Citrus Sinensis ID: 042616
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 220 | ||||||
| 255541294 | 216 | conserved hypothetical protein [Ricinus | 0.963 | 0.981 | 0.644 | 7e-70 | |
| 224129986 | 220 | predicted protein [Populus trichocarpa] | 0.954 | 0.954 | 0.6 | 3e-61 | |
| 225455533 | 219 | PREDICTED: uncharacterized protein LOC10 | 0.963 | 0.968 | 0.607 | 2e-58 | |
| 388522455 | 226 | unknown [Lotus japonicus] | 0.927 | 0.902 | 0.568 | 4e-58 | |
| 357458945 | 219 | hypothetical protein MTR_3g044600 [Medic | 0.959 | 0.963 | 0.535 | 5e-57 | |
| 224120226 | 218 | predicted protein [Populus trichocarpa] | 0.922 | 0.931 | 0.572 | 9e-57 | |
| 356506071 | 219 | PREDICTED: uncharacterized protein LOC10 | 0.963 | 0.968 | 0.554 | 3e-54 | |
| 357504103 | 222 | hypothetical protein MTR_7g034710 [Medic | 0.904 | 0.896 | 0.552 | 7e-54 | |
| 356576563 | 223 | PREDICTED: uncharacterized protein LOC10 | 0.954 | 0.941 | 0.549 | 1e-53 | |
| 356535312 | 224 | PREDICTED: uncharacterized protein LOC10 | 0.954 | 0.937 | 0.547 | 2e-53 |
| >gi|255541294|ref|XP_002511711.1| conserved hypothetical protein [Ricinus communis] gi|223548891|gb|EEF50380.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 269 bits (687), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 143/222 (64%), Positives = 170/222 (76%), Gaps = 10/222 (4%)
Query: 1 MSSWSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALV 60
M+SWS ENATKAYL+ALKMGKR K+PD+ EFISALAAGNNA+L+VMA + +A S L+LV
Sbjct: 1 MASWSPENATKAYLRALKMGKRSKQPDIAEFISALAAGNNARLMVMASAGVAGSTGLSLV 60
Query: 61 AAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDC 120
AAA QTGG+ VCILS D+ S+ +LG YA+C++FV GDA+ LL DY+ ADFVLIDC
Sbjct: 61 AAAHQTGGQAVCILSAE-SDLYESRNALGTYADCVKFVIGDAKTLLSNDYKEADFVLIDC 119
Query: 121 NIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSW-RGYKTHFLPIGEGLLVTRIGE 179
IDG K V RAA+E HG G+IVGYNA KGSW +KTHFLPIGEGL+VTRIG
Sbjct: 120 K--IDGCKEVLRAAQECEKHGR--GLIVGYNAFHKGSWPSAFKTHFLPIGEGLMVTRIGS 175
Query: 180 N-SDVGGGRKRSRWVVTVDKCTGEEHVFRVTSSSSPRKVIEA 220
S+ GG RKRS+WV VD+CTGEEHV+RVT SP + IEA
Sbjct: 176 KVSEEGGHRKRSKWVTRVDRCTGEEHVYRVT---SPLEEIEA 214
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129986|ref|XP_002320720.1| predicted protein [Populus trichocarpa] gi|222861493|gb|EEE99035.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 138/230 (60%), Positives = 166/230 (72%), Gaps = 20/230 (8%)
Query: 1 MSSWSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALV 60
M+SWS+ENATKAY ALKMGKR KE D EFISALAAGN+A+L+V+A +SI S TL+LV
Sbjct: 1 MASWSAENATKAYFYALKMGKRDKELDASEFISALAAGNSAKLMVIASASIDGSTTLSLV 60
Query: 61 AAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDC 120
AAA QTGG VVCIL ++ ASK +LG YA+C++FV GDA+ LL DY+GADFVL+DC
Sbjct: 61 AAAHQTGGNVVCILP-TKSNLSASKNALGPYADCVKFVMGDAKTLLPKDYKGADFVLVDC 119
Query: 121 NIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG-SWR-GYKTHFLPIGEGLLVTRIG 178
D+D K V RA++E HG G++VGYNA KG SW +KT FLPIGEGLLVT G
Sbjct: 120 --DLDDCKEVLRASQECSKHGK--GLVVGYNAFHKGSSWSCEFKTRFLPIGEGLLVT--G 173
Query: 179 ENS--------DVGGGRKRSRWVVTVDKCTGEEHVFRVTSSSSPRKVIEA 220
++S G KRS+WV VDKCTGEEHV+RVT SPR+ IEA
Sbjct: 174 KDSAGKGTGGGHGHGHGKRSKWVTKVDKCTGEEHVYRVT---SPRQEIEA 220
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225455533|ref|XP_002266318.1| PREDICTED: uncharacterized protein LOC100265251 [Vitis vinifera] gi|296084137|emb|CBI24525.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/227 (60%), Positives = 158/227 (69%), Gaps = 15/227 (6%)
Query: 1 MSSWSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALV 60
M+ WS+ENATKAYL LKMG R KEPDV EFISALAAGNNAQL+V+AC+S+ S LAL
Sbjct: 1 MACWSAENATKAYLSTLKMGHRAKEPDVAEFISALAAGNNAQLMVVACASVTSSTALALA 60
Query: 61 AAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDC 120
AAA QTGGRVVCIL G + ++ +SK LG A IEFV G+AQ LL+ DY ADFVLIDC
Sbjct: 61 AAAHQTGGRVVCILRG-LEELHSSKMLLGLDACHIEFVVGEAQTLLLNDYMEADFVLIDC 119
Query: 121 NIDIDGHKNVFRAAKESVMHGSGAG-VIVGYNALPKGSWR--GYKTHFLPIGEGLLVTRI 177
N ++ H+ + RA + G G V++GYNA KG+WR G KT LPIGEGLLVTRI
Sbjct: 120 N--LENHEGILRAVQAG---GKPNGAVVIGYNAFGKGTWRVNGSKTQLLPIGEGLLVTRI 174
Query: 178 GE----NSDVGGGRKRSRWVVTVDKCTGEEHVFRVTSSSSPRKVIEA 220
G N GG KRS WVV VDKCTGEEHVFRV R IEA
Sbjct: 175 GAKAKVNGSCGGVGKRSHWVVKVDKCTGEEHVFRVRFPQGKR--IEA 219
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388522455|gb|AFK49289.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 125/220 (56%), Positives = 162/220 (73%), Gaps = 16/220 (7%)
Query: 1 MSSWSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALV 60
M+ WS+ENATKAYL LKMG++ KEP+V EFISALAAGNNAQL+V+AC+S A S TLALV
Sbjct: 1 MACWSAENATKAYLNTLKMGQKAKEPNVAEFISALAAGNNAQLMVVACASAADSNTLALV 60
Query: 61 AAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLID 119
AAA QTGG+V+CI+SG +++ASK +LG ++ ++F+ G+AQKLL+ D + ADF++ID
Sbjct: 61 AAAHQTGGKVICIVSG-HEELNASKIALGVASHHVQFMVGEAQKLLLSDKFVAADFLVID 119
Query: 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP-KGSWRG-----YKTHFLPIGEGLL 173
CN ++ H+ + +A +E +G V+VGYNA +GSW KT LPIGEGLL
Sbjct: 120 CN--LENHEEILKAVQEGSREKNGT-VVVGYNAFSCRGSWLSSCGSKTKTQLLPIGEGLL 176
Query: 174 VTRIG--ENSDVGG---GRKRSRWVVTVDKCTGEEHVFRV 208
VTR G +NS G G+ +SRWVV VDKCTGEEHVFRV
Sbjct: 177 VTRFGVSDNSPKHGSKMGKMKSRWVVKVDKCTGEEHVFRV 216
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Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357458945|ref|XP_003599753.1| hypothetical protein MTR_3g044600 [Medicago truncatula] gi|357469639|ref|XP_003605104.1| hypothetical protein MTR_4g023950 [Medicago truncatula] gi|355488801|gb|AES70004.1| hypothetical protein MTR_3g044600 [Medicago truncatula] gi|355506159|gb|AES87301.1| hypothetical protein MTR_4g023950 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 120/224 (53%), Positives = 155/224 (69%), Gaps = 13/224 (5%)
Query: 1 MSSWSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALV 60
MS WS ENA KAYLQALKM KR KEPDV EFISA+AAG NAQL+V+A +++A S TLAL
Sbjct: 1 MSEWSPENAKKAYLQALKMAKRDKEPDVAEFISAIAAGKNAQLMVVASANVASSTTLALA 60
Query: 61 AAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDC 120
AA++QT GRV+ I SG ++ ASK++LG + + +EFV GDA+ LL+ DY+GADFVL+DC
Sbjct: 61 AASQQTHGRVIYISSGQ-NELQASKEALGVHKDSVEFVVGDAKTLLLNDYKGADFVLVDC 119
Query: 121 NIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG-SWRGYKTHFLPIGEGLLVTRIGE 179
D++ + VF AA + ++VGYN + WR ++ +LPIGEGLLVT+I
Sbjct: 120 --DMNNAREVFLAAFKGA--NKDGALVVGYNVRHRALRWRQFRATYLPIGEGLLVTKIDL 175
Query: 180 N----SDVGGGRKRSRWVVTVDKCTGEEHVFRVTSSSSPRKVIE 219
N D+ R +S W+V VD CTGEEH+FRVT SP K I
Sbjct: 176 NVKKDYDMVVQRNKSNWIVQVDNCTGEEHIFRVT---SPNKKIH 216
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120226|ref|XP_002318277.1| predicted protein [Populus trichocarpa] gi|222858950|gb|EEE96497.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 225 bits (574), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 122/213 (57%), Positives = 148/213 (69%), Gaps = 10/213 (4%)
Query: 1 MSSWSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALV 60
M WS+ENAT AYL+ L+MG+R EPDV EFISALAAGNNAQL+V+AC++ A + +L LV
Sbjct: 1 MGYWSAENATNAYLKTLRMGQRANEPDVAEFISALAAGNNAQLMVVACANAAATTSLTLV 60
Query: 61 AAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDC 120
AAA QTGGRVVCIL G ++ SKK LG A +EFV G+AQ LL+ Y ADFVLIDC
Sbjct: 61 AAAHQTGGRVVCILPG-HQELQLSKKILGYDACHVEFVIGEAQSLLLTHYSEADFVLIDC 119
Query: 121 NIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWR--GYKTHFLPIGEGLLVTRIG 178
N ++ H+ + + + V+VGYNA KGSWR G KT LPIG GLLVTRI
Sbjct: 120 N--LENHEAILGSVQ--ARKKRNGAVVVGYNAFSKGSWRSGGSKTQLLPIGGGLLVTRIS 175
Query: 179 ENSDVGGG---RKRSRWVVTVDKCTGEEHVFRV 208
++ + G KRS WVV VD+CTGEEHVFRV
Sbjct: 176 ASAKIADGCGHGKRSHWVVKVDECTGEEHVFRV 208
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356506071|ref|XP_003521811.1| PREDICTED: uncharacterized protein LOC100783654 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 123/222 (55%), Positives = 157/222 (70%), Gaps = 10/222 (4%)
Query: 1 MSSWSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALV 60
M++WS+ENA KAYLQALKM KRGKEPDV EFISA+AAGNNAQL++++ + +A S TLAL
Sbjct: 1 MANWSAENAKKAYLQALKMAKRGKEPDVAEFISAIAAGNNAQLMMVSSAGVAGSATLALA 60
Query: 61 AAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDC 120
AAA QT GRVVCI I + DAS+K+LG + + +EFV GD + LL+G+Y+GADFVL+DC
Sbjct: 61 AAAHQTNGRVVCICCDQI-ESDASRKALGVHGDRVEFVVGDVKTLLLGEYKGADFVLVDC 119
Query: 121 NIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS-WRGYKTHFLPIGEGLLVTRIGE 179
DI K VF AA + ++VGYN + S WR K FLPIGEGLLV +I
Sbjct: 120 --DITNAKEVFLAAFKGA--NKNGAIVVGYNVKHRVSRWRQLKASFLPIGEGLLVAKIDP 175
Query: 180 N----SDVGGGRKRSRWVVTVDKCTGEEHVFRVTSSSSPRKV 217
N +D +++SRW+V VDKCTGEEH+FRVTS ++
Sbjct: 176 NIVKVNDDKVVQRKSRWIVQVDKCTGEEHIFRVTSPDRKMQI 217
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357504103|ref|XP_003622340.1| hypothetical protein MTR_7g034710 [Medicago truncatula] gi|217071496|gb|ACJ84108.1| unknown [Medicago truncatula] gi|355497355|gb|AES78558.1| hypothetical protein MTR_7g034710 [Medicago truncatula] gi|388491994|gb|AFK34063.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 122/221 (55%), Positives = 154/221 (69%), Gaps = 22/221 (9%)
Query: 1 MSSWSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALV 60
M+ WS+ENATKAYL LKMG++ KEP+V EFISALAAGNNAQ++++AC+++A S TLAL+
Sbjct: 1 MACWSAENATKAYLSTLKMGQKAKEPNVAEFISALAAGNNAQMMIVACANVADSTTLALI 60
Query: 61 AAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLID 119
AAA QTGG+V+CI+ D+ ASK LG ++ ++F+ G AQ++LM D Y ADF+LID
Sbjct: 61 AAANQTGGQVICIVPNH-KDLIASKHVLGIASHQVQFMVGKAQEVLMLDQYEAADFLLID 119
Query: 120 CNIDIDGHKNVFRAAKESVMHGSGAGV-IVGYNALP-KGSWR--GYKTHFLPIGEGLLVT 175
CN I H+ + + +E G V +VGYN KGSW G KT LPIGEGLLVT
Sbjct: 120 CN--IKNHEEILKTIQE------GRNVNVVGYNGFSCKGSWLSCGSKTQLLPIGEGLLVT 171
Query: 176 RIG---ENSDVGG-----GRKRSRWVVTVDKCTGEEHVFRV 208
R G NS G G+ +SRWVV VDKCTGEEHVFRV
Sbjct: 172 RFGISENNSPRYGTSRSMGKIKSRWVVKVDKCTGEEHVFRV 212
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576563|ref|XP_003556400.1| PREDICTED: uncharacterized protein LOC100816283 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 128/233 (54%), Positives = 159/233 (68%), Gaps = 23/233 (9%)
Query: 1 MSSWSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALV 60
M+ WS+ENATKAYL LKMG++ KEPDV EFISALAAGNNAQL+V+AC A S TLALV
Sbjct: 1 MACWSAENATKAYLSTLKMGQKCKEPDVAEFISALAAGNNAQLMVVACGGAADSTTLALV 60
Query: 61 AAARQTGGRVVCILSGVIGDIDASKKSLGRYA-NCIEFVKGDAQKLLMGDY-RGADFVLI 118
AA QTGG+V+CI+ G ++ ASK +LGR A + ++F+ G+AQ++L+ Y + ADFVLI
Sbjct: 61 TAAHQTGGQVICIVPG-HEELRASKIALGRMASHQVQFMVGEAQEVLLEHYDQAADFVLI 119
Query: 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWR------GYKTHFLPIGEGL 172
DCN ++ H+ + RA +E V+VGYNA S R G KT LPIG GL
Sbjct: 120 DCN--LENHEEILRAVQEG--RKQNGTVVVGYNAF---SCRKSCLACGSKTQLLPIGGGL 172
Query: 173 LVTRIG--ENSDVGG---GRKRSRWVVTVDKCTGEEHVFRVTSSSSPRKVIEA 220
LVTR G E S G G+ +SRWVV VDKCTGEEHVFRV RKV++A
Sbjct: 173 LVTRFGVSETSPKYGSRMGKAKSRWVVKVDKCTGEEHVFRVRFPQ--RKVVQA 223
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535312|ref|XP_003536191.1| PREDICTED: uncharacterized protein LOC100775961 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 128/234 (54%), Positives = 159/234 (67%), Gaps = 24/234 (10%)
Query: 1 MSSWSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALV 60
M+ WS+ENATKAYL LKMG++ KEPDV EFISALAAGNNAQL+V+AC A S TLALV
Sbjct: 1 MACWSAENATKAYLSTLKMGQKCKEPDVAEFISALAAGNNAQLMVVACGGAADSTTLALV 60
Query: 61 AAARQTGGRVVCILSGVIGDIDASKKSLGRYA-NCIEFVKGDAQKLLMGDY-RGADFVLI 118
AAA QTGG+V+CI+ ++ ASK S+GR A + ++F+ G+AQ++L+ Y + ADFVLI
Sbjct: 61 AAANQTGGKVICIVPS-HEELRASKISMGRMASHQVQFMVGEAQEVLLEHYDQAADFVLI 119
Query: 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWR------GYKTHFLPIGEGL 172
DCN ++ H+ + RA +E V+VGYNA S R G KT LPIG GL
Sbjct: 120 DCN--LENHEEILRAVQEG--RKQNGTVVVGYNAF---SCRKSCLACGSKTQLLPIGGGL 172
Query: 173 LVTRIG--ENSDVGG----GRKRSRWVVTVDKCTGEEHVFRVTSSSSPRKVIEA 220
LVTR G E S G G+ +SRWVV VDKCTGEEHVFRV RKV++A
Sbjct: 173 LVTRFGVSETSPKYGNRIMGKVKSRWVVKVDKCTGEEHVFRVRFPQ--RKVVQA 224
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 220 | ||||||
| TAIR|locus:2167913 | 236 | AT5G62280 "AT5G62280" [Arabido | 0.804 | 0.75 | 0.497 | 8.9e-38 | |
| TAIR|locus:2050842 | 215 | AT2G45360 "AT2G45360" [Arabido | 0.895 | 0.916 | 0.327 | 6.3e-21 | |
| TAIR|locus:2034645 | 212 | AT1G12320 "AT1G12320" [Arabido | 0.9 | 0.933 | 0.293 | 1.2e-17 | |
| TAIR|locus:2101911 | 218 | AT3G60780 "AT3G60780" [Arabido | 0.890 | 0.899 | 0.316 | 3.2e-17 | |
| TAIR|locus:2026202 | 224 | AT1G62840 "AT1G62840" [Arabido | 0.895 | 0.879 | 0.300 | 1.3e-13 |
| TAIR|locus:2167913 AT5G62280 "AT5G62280" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 96/193 (49%), Positives = 130/193 (67%)
Query: 1 MSSWSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTL-AL 59
M+ WS+ENATKAYL LK +R KEP+V EFISALAAGN+A+ I +AC+ A + L AL
Sbjct: 1 MAFWSAENATKAYLSTLKTDQRTKEPNVAEFISALAAGNSARKIAVACAGAANADILVAL 60
Query: 60 VAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQK-LLMGDYRG-ADFV 116
+AAA QT G+VVC+L G I ++ S+K L + I+FV G++ L+ ++ G ADFV
Sbjct: 61 IAAANQTRGQVVCVLRG-IEELIISQKMLEPSEIHQIQFVVGESNDDTLINNHFGEADFV 119
Query: 117 LIDCNIDIDGHKNV----FRAAKESVMHGSGAGV--IVGYNALPKGSWR---GYKTHFLP 167
L+DCN++ H+ + +E+ G G+GV +VGYNA +GSWR G KT FLP
Sbjct: 120 LVDCNLE--NHQEIVGKILNHHEENARTGGGSGVAVVVGYNAFSRGSWRFSDGRKTQFLP 177
Query: 168 IGEGLLVTRIGEN 180
IGEGLLVTR+ +N
Sbjct: 178 IGEGLLVTRVNDN 190
|
|
| TAIR|locus:2050842 AT2G45360 "AT2G45360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 71/217 (32%), Positives = 107/217 (49%)
Query: 4 WSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACS-SIAVSRTLALVAA 62
WS E A+ AY+ +K K KE V EF+SA AAG NA+LIV S ++ ++ L A
Sbjct: 5 WSPETASDAYIDTVKSCKSDKESGVAEFLSATAAGWNARLIVETWSRGDPITTSVGLAVA 64
Query: 63 ARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI 122
A TGGR VCI+ ++ G + V G++ + M ++ G DF+++D
Sbjct: 65 ATHTGGRHVCIVPDEQSKLEYVLAMRG-FVTTEVVVVGESVENTMEEFPGVDFLVVDSK- 122
Query: 123 DIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG----SW-----RG---YKTHFLPIGE 170
+ R + + + GA V+V NA+ + W RG ++ FLP+G
Sbjct: 123 ----RREFVRTLRFAKLSNKGA-VLVCKNAMHRAISGFKWHDVLKRGTRVVRSVFLPVGS 177
Query: 171 GLLVTRIGENSDVGGGRKRSRWVVTVDKCTGEEHVFR 207
GL + +G RSRW+ VD +GEEH+FR
Sbjct: 178 GLDIVHVGATGRGDSRNLRSRWIRHVDHLSGEEHLFR 214
|
|
| TAIR|locus:2034645 AT1G12320 "AT1G12320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 63/215 (29%), Positives = 108/215 (50%)
Query: 4 WSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSS-IAVSRTLALVAA 62
WS E A+KAY+ +K + + PD E I+A+AAG N +LIV S A++ ++ L A
Sbjct: 5 WSPETASKAYIDTVKSCENLETPDAAELIAAMAAGWNVKLIVETWSEGDAIASSIGLNVA 64
Query: 63 ARQTGGRVVCILSGVIGD---IDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119
++ + +CI+ + + A ++S N E + + M +G DF+++D
Sbjct: 65 SKHANAKHICIVQNSRSESAYLQAIQESSSPL-NFPETIVAEEPGKAMKKLQGVDFLVVD 123
Query: 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIV---GYNALPK--GSWRGYKTHFLPIGEGLLV 174
+K AA ++ G+ V+V GY++L + + +T LP+ G+ +
Sbjct: 124 WR-----NKEFAAAALKNAAFGNRGAVVVCRNGYSSLRRVLRDRKVVRTVTLPVTGGIEI 178
Query: 175 TRIG-ENSDVGGGRKRSRWVVTVDKCTGEEHVFRV 208
+ NS G KR RW+ VD+ +GEEHVF +
Sbjct: 179 AHVAARNSGKSGNNKR-RWITHVDQRSGEEHVFSI 212
|
|
| TAIR|locus:2101911 AT3G60780 "AT3G60780" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 70/221 (31%), Positives = 109/221 (49%)
Query: 4 WSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACS-SIAVSRTLALVAA 62
WS E A+ AY+ ++ K ++ V EF+SA AAG N +LIV S ++ ++ L A
Sbjct: 5 WSPETASNAYIHTVRSCKSYRDSSVAEFLSATAAGWNTRLIVETWSRGDPIATSVGLAVA 64
Query: 63 ARQTGGRVVCILSGVIGDIDASKKSLGRY-ANCIEFVKGDAQKLLMGDYRGADFVLIDCN 121
A T GR VCI+ + G ++ E + D+ + ++ G DF+++D
Sbjct: 65 AIHTCGRHVCIVPDEESRSEYEAVMRGAVTSDSTEVMVLDSAEDVVERISGVDFMVVDSK 124
Query: 122 IDIDGHK--NVFRAAKESVMHGSGAGVIVGYNA----LPKGSWRGY--------KTHFLP 167
H+ N AK S M GA V+V NA +P W+G ++ FLP
Sbjct: 125 ----RHEFVNALGLAKTSKM---GA-VLVCKNATLKSIPGFKWQGLLRRGTRVVRSVFLP 176
Query: 168 IGEGLLVTRIGENSDVGGGRK-RSRWVVTVDKCTGEEHVFR 207
+G GL + +G + G RK SRW+ +D +GEEH+F+
Sbjct: 177 VGRGLEIVHVGASGGGNGLRKIPSRWIKHIDPRSGEEHLFK 217
|
|
| TAIR|locus:2026202 AT1G62840 "AT1G62840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 68/226 (30%), Positives = 105/226 (46%)
Query: 4 WSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACS---SIAVSRTLALV 60
WS E A+KAY+ +K + P E ++A+AAG NA LIV S +IA+S + L
Sbjct: 5 WSPETASKAYIDTVKSCENLGTPGAAELVAAMAAGWNANLIVETWSEGETIAIS--VGLN 62
Query: 61 AAARQTGGRVVCILSGVIGD---IDA-SKKSLGRYANCIEF-VKGDAQKLLMGDYRGADF 115
A+R T GR +CI+ + A +++S I +G+ + M +G DF
Sbjct: 63 IASRHTNGRHICIVPNARSQTAYLQAMAEQSCSNLPETIIMNEEGEELEHTMQTLQGIDF 122
Query: 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIV---GYNALPKG-SW-RGY------KTH 164
+++D + D NV R A + GS V+V GY SW + + +T
Sbjct: 123 LVVDWD-QKDFAANVLRNA----VFGSRGAVVVCRSGYRRSTSCFSWTKAFSDRNVVRTV 177
Query: 165 FLPIGEGLLVTRIGENSDVGGGRKRS---RWVVTVDKCTGEEHVFR 207
LP+ GL + + G S +W+ D+ +GEEHV R
Sbjct: 178 TLPVSGGLEIAHVAAARSSGKSDNNSNKRKWIKHFDQRSGEEHVIR 223
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 220 220 0.00094 112 3 11 22 0.39 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 608 (65 KB)
Total size of DFA: 177 KB (2102 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.24u 0.10s 17.34t Elapsed: 00:00:02
Total cpu time: 17.24u 0.10s 17.34t Elapsed: 00:00:02
Start: Tue May 21 01:25:52 2013 End: Tue May 21 01:25:54 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 220 | |||
| pfam07279 | 218 | pfam07279, DUF1442, Protein of unknown function (D | 1e-26 | |
| COG4122 | 219 | COG4122, COG4122, Predicted O-methyltransferase [G | 7e-07 |
| >gnl|CDD|115904 pfam07279, DUF1442, Protein of unknown function (DUF1442) | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-26
Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 35/226 (15%)
Query: 4 WSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACS---SIAVSRTLALV 60
WS E A+KAY+ +K + P E ++A+AAG NA+LIV S IA S L +
Sbjct: 5 WSPETASKAYIDTVKSCENLGTPGAAELLAAMAAGWNARLIVETWSEGDPIATSVGLNV- 63
Query: 61 AAARQTGGRVVCILSGVIGDIDASKKSLGRYA-------NCIEFVKGDAQKLLMGDYRGA 113
A+R T GR +CI+ + +S A N E + G+ + M +G
Sbjct: 64 -ASRHTNGRHICIVP------NERSQSAYLQAMREQSTSNLPETIVGEELEHTMETLQGV 116
Query: 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA----LPKGSWRG-------YK 162
DF+++D + A + + GA V+V N + SW +
Sbjct: 117 DFLVVDW----KRKEFAANALRNAKFGNRGA-VVVCRNGYRRSISGFSWTKVLRDRRVVR 171
Query: 163 THFLPIGEGLLVTRIGENSDVGGGRK-RSRWVVTVDKCTGEEHVFR 207
T LP+G GL + + G + RW+ VD+ +GEEHVFR
Sbjct: 172 TVTLPVGGGLEIAHVAAAGSGGSSNNNKRRWIKHVDQRSGEEHVFR 217
|
This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown. Length = 218 |
| >gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 7e-07
Identities = 43/186 (23%), Positives = 67/186 (36%), Gaps = 47/186 (25%)
Query: 25 EPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDAS 84
+P+ G + LA + + I+ ++I S L + A GR+ I + D
Sbjct: 44 DPETGALLRLLARLSGPKRILEIGTAIGYS-ALWMALALPDD-GRLTTI------ERDEE 95
Query: 85 KKSLGR-------YANCIE-FVKGDAQKLLMGDYRGA-DFVLIDCNIDIDGHKNVFRAAK 135
+ + R + IE + GDA +L G+ D V ID D + A
Sbjct: 96 RAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFIDA--DKADYPEYLERAL 153
Query: 136 ESVMHGSGAGVIVGYNALPKG------------------------SWR-GYKTHFLPIGE 170
+ G G+IV N L G Y T LP+G+
Sbjct: 154 PLLRPG---GLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGD 210
Query: 171 GLLVTR 176
GLL++R
Sbjct: 211 GLLLSR 216
|
Length = 219 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 220 | |||
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 100.0 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 100.0 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 100.0 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 100.0 | |
| PLN02476 | 278 | O-methyltransferase | 100.0 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.98 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 99.97 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.67 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.66 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.63 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.62 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 99.6 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.59 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.58 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.57 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.57 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.56 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.56 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.55 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.52 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.5 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.49 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.48 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.48 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.47 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.46 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.41 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.4 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.34 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.32 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.31 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.31 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.31 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.31 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.3 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.29 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.29 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.29 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.28 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.27 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.27 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.27 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.27 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.26 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.26 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.26 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.24 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.24 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.24 | |
| PLN02366 | 308 | spermidine synthase | 99.23 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.23 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.21 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.19 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.18 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.17 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.17 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.16 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.16 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.15 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.15 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.15 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.15 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.14 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.13 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.13 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.13 | |
| PLN02823 | 336 | spermine synthase | 99.13 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.12 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.11 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.1 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.09 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.09 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.08 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.08 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.08 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.08 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.08 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.06 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.06 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.06 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.06 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.05 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.05 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.05 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.05 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.05 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.03 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.03 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.01 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 99.01 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.01 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.99 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.99 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.99 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.98 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.98 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.98 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.97 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.97 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.97 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.97 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.96 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.96 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.95 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.94 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.93 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.93 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.93 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.93 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.93 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.92 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.92 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.9 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.9 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.9 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.88 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.88 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.88 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.88 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.85 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.85 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.85 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.85 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.85 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.83 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.83 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.81 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.81 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.8 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.78 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.78 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.77 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.77 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.77 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.77 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.77 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.76 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.75 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.74 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.73 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.72 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.71 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.71 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.7 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.68 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.68 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.67 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.67 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.65 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.65 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.65 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.64 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 98.64 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.64 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.62 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.59 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.57 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.56 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.55 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.55 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.55 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.54 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.53 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.52 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.52 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.48 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 98.45 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.45 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.42 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.39 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.36 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.36 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.33 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.32 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.32 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.3 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.28 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.28 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.28 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.26 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.23 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.22 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.2 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.17 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.15 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.14 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.13 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.1 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.09 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.08 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.07 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.05 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.04 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.04 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.02 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 98.0 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.98 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.98 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.95 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.88 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.84 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.82 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.82 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.81 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.78 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 97.77 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.75 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.74 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 97.71 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.69 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 97.65 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.64 | |
| PHA01634 | 156 | hypothetical protein | 97.62 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 97.55 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.53 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 97.49 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.48 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.46 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.44 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.43 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.31 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.28 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.15 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.13 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.13 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 97.12 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.12 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.11 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 97.11 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 97.08 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.04 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 97.03 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.98 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 96.93 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 96.87 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 96.85 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 96.83 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.81 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 96.76 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.67 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 96.63 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 96.58 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 96.54 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.54 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.51 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 96.47 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 96.38 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 96.37 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.36 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.26 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 96.21 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.16 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 96.16 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.15 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 96.12 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 96.07 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 96.05 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 96.02 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 96.0 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 95.79 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 95.79 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 95.76 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 95.75 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 95.71 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 95.69 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 95.67 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 95.67 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.65 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 95.57 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.56 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 95.53 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 95.51 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 95.49 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 95.48 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 95.45 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.45 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 95.43 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 95.43 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 95.42 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 95.34 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.24 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 95.19 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 95.19 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 95.19 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 95.12 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 95.12 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 95.08 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 94.99 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 94.98 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 94.93 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 94.91 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 94.88 | |
| TIGR01007 | 204 | eps_fam capsular exopolysaccharide family. This mo | 94.81 | |
| TIGR03815 | 322 | CpaE_hom_Actino helicase/secretion neighborhood Cp | 94.69 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 94.52 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 94.48 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 94.36 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 94.33 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 94.31 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 94.29 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 94.28 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 94.23 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 94.23 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 94.18 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 94.18 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 94.13 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 94.05 | |
| PF07015 | 231 | VirC1: VirC1 protein; InterPro: IPR009744 This fam | 94.05 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 94.01 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 93.97 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 93.97 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 93.96 | |
| TIGR03029 | 274 | EpsG chain length determinant protein tyrosine kin | 93.93 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 93.91 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 93.91 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 93.9 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 93.89 | |
| TIGR01968 | 261 | minD_bact septum site-determining protein MinD. Th | 93.89 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 93.86 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 93.84 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 93.63 | |
| TIGR01969 | 251 | minD_arch cell division ATPase MinD, archaeal. Thi | 93.61 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 93.57 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 93.54 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 93.52 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 93.5 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 93.5 | |
| PF06564 | 243 | YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p | 93.45 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 93.42 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 93.3 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 93.28 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 93.26 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 93.21 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 93.18 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 93.18 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 93.18 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 93.14 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 93.11 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 93.05 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 93.04 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 93.03 | |
| PRK10818 | 270 | cell division inhibitor MinD; Provisional | 93.02 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 92.99 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 92.98 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 92.95 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 92.9 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 92.85 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.83 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 92.82 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 92.8 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 92.7 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 92.67 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 92.61 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 92.54 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 92.53 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 92.46 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 92.45 | |
| TIGR03453 | 387 | partition_RepA plasmid partitioning protein RepA. | 92.41 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 92.27 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 92.26 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 92.15 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 92.07 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 92.06 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 92.06 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 92.05 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 91.99 | |
| PRK13699 | 227 | putative methylase; Provisional | 91.81 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 91.8 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 91.76 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 91.74 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 91.71 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 91.65 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 91.63 | |
| PRK13849 | 231 | putative crown gall tumor protein VirC1; Provision | 91.62 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 91.54 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 91.51 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 91.51 | |
| cd08299 | 373 | alcohol_DH_class_I_II_IV class I, II, IV alcohol d | 91.5 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 91.44 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 91.39 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 91.37 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 91.35 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 91.29 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 91.27 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 91.25 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 91.18 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 91.18 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 91.16 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 91.08 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 91.07 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 90.96 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 90.89 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 90.82 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 90.76 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 90.75 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 90.75 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 90.74 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 90.7 | |
| TIGR03018 | 207 | pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t | 90.67 | |
| cd08276 | 336 | MDR7 Medium chain dehydrogenases/reductase (MDR)/z | 90.65 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 90.63 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 90.62 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 90.52 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 90.49 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 90.49 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 90.46 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 90.45 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 90.42 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 90.37 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 90.35 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 90.35 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 90.34 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 90.33 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 90.22 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 90.2 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 90.17 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 90.14 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 90.13 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 90.11 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 90.11 | |
| PRK10037 | 250 | cell division protein; Provisional | 90.09 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 90.08 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 90.06 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 90.05 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 90.04 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 90.04 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 90.03 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 89.99 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 89.89 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 89.89 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 89.79 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 89.75 | |
| CHL00175 | 281 | minD septum-site determining protein; Validated | 89.65 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 89.62 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 89.59 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 89.52 | |
| PRK13869 | 405 | plasmid-partitioning protein RepA; Provisional | 89.52 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 89.51 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 89.41 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 89.35 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 89.31 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 89.14 | |
| PLN02494 | 477 | adenosylhomocysteinase | 89.1 | |
| PF00072 | 112 | Response_reg: Response regulator receiver domain; | 89.08 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 89.0 | |
| cd02040 | 270 | NifH NifH gene encodes component II (iron protein) | 88.87 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 88.81 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 88.79 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 88.73 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 88.71 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 88.67 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 88.65 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.64 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 88.63 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 88.63 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 88.63 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 88.62 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 88.59 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 88.59 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.56 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 88.55 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 88.53 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 88.53 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 88.51 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 88.48 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 88.44 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 88.38 | |
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 88.38 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 88.37 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 88.35 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 88.3 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 88.27 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 88.26 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 88.25 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 88.15 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 88.14 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 88.13 | |
| PLN02242 | 418 | methionine gamma-lyase | 88.13 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 88.07 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 88.05 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 88.01 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 87.92 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.79 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 87.63 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 87.63 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 87.61 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 87.61 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 87.57 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 87.51 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 87.48 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 87.46 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 87.41 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 87.32 | |
| PLN02602 | 350 | lactate dehydrogenase | 87.31 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 87.29 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 87.29 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 87.25 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 87.25 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 87.23 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 87.18 |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-57 Score=379.98 Aligned_cols=198 Identities=55% Similarity=0.859 Sum_probs=175.3
Q ss_pred CCChhhhHHHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCC-chHHHHHHHHHHcCCCCcEEEEEeCCchhHH
Q 042616 3 SWSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSS-IAVSRTLALVAAARQTGGRVVCILSGVIGDI 81 (220)
Q Consensus 3 ~w~~e~a~~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg-~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~ 81 (220)
+||||+|+||||+|||+|+...+|+++|||++||+++|+++|||++++ +...+|+.||.|+++|+||++||.++ ++..
T Consensus 4 ~WSpe~AtkAYl~Tvk~c~~~~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~-~~~~ 82 (218)
T PF07279_consen 4 VWSPENATKAYLDTVKMCKKFKEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPD-EQSL 82 (218)
T ss_pred eeChhHHHHHHHHHHHHhhhcCCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCC-hhhH
Confidence 799999999999999999999999999999999999999999999863 34578999999999999999999999 6666
Q ss_pred HHHHHHhc--ccCCcEEEEEcch-hhhhhhcCCCccEEEEcCCCCCccHH-HHHHHHHhhcCCCCCCEEEEEecCCCCC-
Q 042616 82 DASKKSLG--RYANCIEFVKGDA-QKLLMGDYRGADFVLIDCNIDIDGHK-NVFRAAKESVMHGSGAGVIVGYNALPKG- 156 (220)
Q Consensus 82 ~~Ar~~l~--g~~~~Ve~v~gda-~~~L~~~~~~~D~VfiD~~k~~~~y~-~~l~~l~~~~~L~~~Ggviv~dNv~~~g- 156 (220)
...++.+. ++.+.+||+.|++ +++++. ...+||+++||.. ++|. ++|+.+... |+|+|||++|++.++
T Consensus 83 ~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~-~~~iDF~vVDc~~--~d~~~~vl~~~~~~----~~GaVVV~~Na~~r~~ 155 (218)
T PF07279_consen 83 SEYKKALGEAGLSDVVEFVVGEAPEEVMPG-LKGIDFVVVDCKR--EDFAARVLRAAKLS----PRGAVVVCYNAFSRST 155 (218)
T ss_pred HHHHHHHhhccccccceEEecCCHHHHHhh-ccCCCEEEEeCCc--hhHHHHHHHHhccC----CCceEEEEeccccCCc
Confidence 66666665 7777899999985 567766 5789999999999 9998 999988754 789999999999854
Q ss_pred ---Ccc-------ceEEEeeecCCcEEEEEEeecCC-CCCCCcCcCceEecccCCCceeEEEe
Q 042616 157 ---SWR-------GYKTHFLPIGEGLLVTRIGENSD-VGGGRKRSRWVVTVDKCTGEEHVFRV 208 (220)
Q Consensus 157 ---~~~-------~~~s~~lPig~Gl~v~~~~~~~~-~~~~~~~~~w~~~~d~~~~~~~~~~~ 208 (220)
+|+ .++|++||||+||+|+++..+++ ..+++++||||+|||||||||||||+
T Consensus 156 ~~~~w~~~~~~~r~Vrsv~LPIG~GleVt~ig~~~~~~~~~~~~srWi~~vD~~sGEeHv~R~ 218 (218)
T PF07279_consen 156 NGFSWRSVLRGRRVVRSVFLPIGKGLEVTRIGASGGSNSSRRKKSRWIKHVDQCSGEEHVFRR 218 (218)
T ss_pred CCccHHHhcCCCCceeEEEeccCCCeEEEEEeecCCCCCCCCCCccceEeeccCCCceeeecC
Confidence 676 48999999999999999998765 33567999999999999999999995
|
The function of this family is unknown. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=259.31 Aligned_cols=150 Identities=24% Similarity=0.350 Sum_probs=136.2
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
.+.++|++|+||..|++..+|++||||||+ +||||+|||.++++ +|+|+|||.| ++.++.|+++++ |+.++|+++
T Consensus 26 ~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~-~GySal~la~~l~~-~g~i~tiE~~-~~~~~~A~~~~~~ag~~~~I~~~ 102 (205)
T PF01596_consen 26 QMSISPETGQLLQMLVRLTRPKRVLEIGTF-TGYSALWLAEALPE-DGKITTIEID-PERAEIARENFRKAGLDDRIEVI 102 (205)
T ss_dssp GGSHHHHHHHHHHHHHHHHT-SEEEEESTT-TSHHHHHHHHTSTT-TSEEEEEESS-HHHHHHHHHHHHHTTGGGGEEEE
T ss_pred CCccCHHHHHHHHHHHHhcCCceEEEeccc-cccHHHHHHHhhcc-cceEEEecCc-HHHHHHHHHHHHhcCCCCcEEEE
Confidence 467899999999999999999999999996 99999999999987 8999999999 999999999998 888899999
Q ss_pred Ecchhhhhhhc-----CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC----------------
Q 042616 99 KGDAQKLLMGD-----YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS---------------- 157 (220)
Q Consensus 99 ~gda~~~L~~~-----~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~---------------- 157 (220)
+|||.++|+.+ .++|||||||++| .+|.+||+.+.++ |+| ||+||+||++++|.
T Consensus 103 ~gda~~~l~~l~~~~~~~~fD~VFiDa~K--~~y~~y~~~~~~l--l~~-ggvii~DN~l~~G~V~~~~~~~~~~~~ir~ 177 (205)
T PF01596_consen 103 EGDALEVLPELANDGEEGQFDFVFIDADK--RNYLEYFEKALPL--LRP-GGVIIADNVLWRGSVADPDDEDPKTVAIRE 177 (205)
T ss_dssp ES-HHHHHHHHHHTTTTTSEEEEEEESTG--GGHHHHHHHHHHH--EEE-EEEEEEETTTGGGGGGSTTGGSHHHHHHHH
T ss_pred EeccHhhHHHHHhccCCCceeEEEEcccc--cchhhHHHHHhhh--ccC-CeEEEEccccccceecCccchhhhHHHHHH
Confidence 99999999876 2479999999999 9999999999998 875 99999999999881
Q ss_pred cc-------ceEEEeeecCCcEEEEEEe
Q 042616 158 WR-------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 158 ~~-------~~~s~~lPig~Gl~v~~~~ 178 (220)
|+ +|++++||+|+|+.|++|+
T Consensus 178 f~~~i~~d~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 178 FNEYIANDPRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp HHHHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred HHHHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence 22 7999999999999999985
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=251.47 Aligned_cols=149 Identities=22% Similarity=0.236 Sum_probs=137.4
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
+.++|++++||..|++..+|++||||||+ +||||+|||.++++ +|+|+|||.+ ++.++.|+++++ |+.++|++++
T Consensus 61 ~~~~~~~g~lL~~l~~~~~ak~iLEiGT~-~GySal~la~al~~-~g~v~tiE~~-~~~~~~Ar~~~~~ag~~~~I~~~~ 137 (247)
T PLN02589 61 MTTSADEGQFLNMLLKLINAKNTMEIGVY-TGYSLLATALALPE-DGKILAMDIN-RENYELGLPVIQKAGVAHKIDFRE 137 (247)
T ss_pred CccCHHHHHHHHHHHHHhCCCEEEEEeCh-hhHHHHHHHhhCCC-CCEEEEEeCC-HHHHHHHHHHHHHCCCCCceEEEe
Confidence 45689999999999999999999999995 99999999999987 8999999999 999999999997 8889999999
Q ss_pred cchhhhhhhcC------CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC----------------
Q 042616 100 GDAQKLLMGDY------RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS---------------- 157 (220)
Q Consensus 100 gda~~~L~~~~------~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~---------------- 157 (220)
|++.+.|+.+. ++|||||+|++| .+|.+||+.+.++ |+| ||+||+||++|+|.
T Consensus 138 G~a~e~L~~l~~~~~~~~~fD~iFiDadK--~~Y~~y~~~~l~l--l~~-GGviv~DNvl~~G~v~~~~~~~~~~~~~~~ 212 (247)
T PLN02589 138 GPALPVLDQMIEDGKYHGTFDFIFVDADK--DNYINYHKRLIDL--VKV-GGVIGYDNTLWNGSVVAPPDAPMRKYVRYY 212 (247)
T ss_pred ccHHHHHHHHHhccccCCcccEEEecCCH--HHhHHHHHHHHHh--cCC-CeEEEEcCCCCCCcccCccccchhhhHHHH
Confidence 99999998862 589999999999 9999999999998 875 99999999999871
Q ss_pred ------cc-------ceEEEeeecCCcEEEEEEe
Q 042616 158 ------WR-------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 158 ------~~-------~~~s~~lPig~Gl~v~~~~ 178 (220)
|+ +|+++++|+|||+.|++|.
T Consensus 213 ~~~ir~fn~~v~~d~~~~~~llPigDGl~l~~k~ 246 (247)
T PLN02589 213 RDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246 (247)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEEeCCccEEEEEe
Confidence 11 6999999999999999986
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=246.82 Aligned_cols=149 Identities=25% Similarity=0.337 Sum_probs=137.4
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
+++.|++++||..|++..++++||||||+ .||||+|||.+++. +|++||||.| +++++.|++|++ |+.++|+++.
T Consensus 41 pi~~~e~g~~L~~L~~~~~~k~iLEiGT~-~GySal~mA~~l~~-~g~l~tiE~~-~e~~~~A~~n~~~ag~~~~i~~~~ 117 (219)
T COG4122 41 PIIDPETGALLRLLARLSGPKRILEIGTA-IGYSALWMALALPD-DGRLTTIERD-EERAEIARENLAEAGVDDRIELLL 117 (219)
T ss_pred CCCChhHHHHHHHHHHhcCCceEEEeecc-cCHHHHHHHhhCCC-CCeEEEEeCC-HHHHHHHHHHHHHcCCcceEEEEe
Confidence 45669999999999999999999999995 99999999999997 8899999999 999999999997 8888899999
Q ss_pred -cchhhhhhh-cCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC----C--------------cc
Q 042616 100 -GDAQKLLMG-DYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG----S--------------WR 159 (220)
Q Consensus 100 -gda~~~L~~-~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g----~--------------~~ 159 (220)
||+.+.+.. ..++|||||+|++| .+|+++|+.+.++ |+| ||+||+||++++| . +.
T Consensus 118 ~gdal~~l~~~~~~~fDliFIDadK--~~yp~~le~~~~l--Lr~-GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~ 192 (219)
T COG4122 118 GGDALDVLSRLLDGSFDLVFIDADK--ADYPEYLERALPL--LRP-GGLIVADNVLFGGRVADPSIRDARTQVRGVRDFN 192 (219)
T ss_pred cCcHHHHHHhccCCCccEEEEeCCh--hhCHHHHHHHHHH--hCC-CcEEEEeecccCCccCCccchhHHHHHHHHHHHH
Confidence 699999975 46899999999999 9999999999999 876 9999999999987 1 11
Q ss_pred -------ceEEEeeecCCcEEEEEEe
Q 042616 160 -------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 160 -------~~~s~~lPig~Gl~v~~~~ 178 (220)
++.++++|+|||+.|+++.
T Consensus 193 ~~~~~~~~~~t~~lP~gDGl~v~~k~ 218 (219)
T COG4122 193 DYLLEDPRYDTVLLPLGDGLLLSRKR 218 (219)
T ss_pred HHHhhCcCceeEEEecCCceEEEeec
Confidence 7999999999999999986
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=250.96 Aligned_cols=150 Identities=19% Similarity=0.231 Sum_probs=138.5
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
.++++|++++||..|++..+|++||||||+ +||||+|||.++++ +|+|+|+|.+ ++.++.|++|++ |+.++|+++
T Consensus 99 ~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~-tGySal~lA~al~~-~G~V~TiE~d-~e~~~~Ar~n~~~aGl~~~I~li 175 (278)
T PLN02476 99 QMQVSPDQAQLLAMLVQILGAERCIEVGVY-TGYSSLAVALVLPE-SGCLVACERD-SNSLEVAKRYYELAGVSHKVNVK 175 (278)
T ss_pred ccccCHHHHHHHHHHHHhcCCCeEEEecCC-CCHHHHHHHHhCCC-CCEEEEEECC-HHHHHHHHHHHHHcCCCCcEEEE
Confidence 467899999999999999999999999996 99999999999987 8999999999 999999999997 888899999
Q ss_pred Ecchhhhhhhc-----CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC----------------
Q 042616 99 KGDAQKLLMGD-----YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS---------------- 157 (220)
Q Consensus 99 ~gda~~~L~~~-----~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~---------------- 157 (220)
.||+.+.|+.+ .++|||||+|++| .+|.+|++.+.++ |+| ||+||+||++++|.
T Consensus 176 ~GdA~e~L~~l~~~~~~~~FD~VFIDa~K--~~Y~~y~e~~l~l--L~~-GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~ 250 (278)
T PLN02476 176 HGLAAESLKSMIQNGEGSSYDFAFVDADK--RMYQDYFELLLQL--VRV-GGVIVMDNVLWHGRVADPLVNDAKTISIRN 250 (278)
T ss_pred EcCHHHHHHHHHhcccCCCCCEEEECCCH--HHHHHHHHHHHHh--cCC-CcEEEEecCccCCcccCcccCCHHHHHHHH
Confidence 99999999875 2589999999999 9999999999998 875 99999999999982
Q ss_pred cc-------ceEEEeeecCCcEEEEEEe
Q 042616 158 WR-------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 158 ~~-------~~~s~~lPig~Gl~v~~~~ 178 (220)
|+ +|.++++|+|||++|++|+
T Consensus 251 fn~~v~~d~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 251 FNKKLMDDKRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred HHHHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence 22 7999999999999999974
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-31 Score=228.97 Aligned_cols=149 Identities=19% Similarity=0.148 Sum_probs=136.3
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
+.++|++++||..|++..++++||||||| +||++++||.+++. +|+|+++|.+ +++++.|++|++ ++.++|++++
T Consensus 50 ~~v~~~~g~~L~~l~~~~~~~~vLEiGt~-~G~s~l~la~~~~~-~g~v~tiD~d-~~~~~~A~~n~~~~gl~~~i~~~~ 126 (234)
T PLN02781 50 MEVPVDEGLFLSMLVKIMNAKNTLEIGVF-TGYSLLTTALALPE-DGRITAIDID-KEAYEVGLEFIKKAGVDHKINFIQ 126 (234)
T ss_pred cccCHHHHHHHHHHHHHhCCCEEEEecCc-ccHHHHHHHHhCCC-CCEEEEEECC-HHHHHHHHHHHHHcCCCCcEEEEE
Confidence 37799999999999999999999999996 99999999999876 8999999999 999999999997 7878999999
Q ss_pred cchhhhhhhc-----CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC-----------------
Q 042616 100 GDAQKLLMGD-----YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS----------------- 157 (220)
Q Consensus 100 gda~~~L~~~-----~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~----------------- 157 (220)
||+.+.|+.+ .++|||||+|+++ ..|.++++.+.++ |+| ||+|++||++++|.
T Consensus 127 gda~~~L~~l~~~~~~~~fD~VfiDa~k--~~y~~~~~~~~~l--l~~-GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~ 201 (234)
T PLN02781 127 SDALSALDQLLNNDPKPEFDFAFVDADK--PNYVHFHEQLLKL--VKV-GGIIAFDNTLWFGFVAQEEDEVPEHMRAYRK 201 (234)
T ss_pred ccHHHHHHHHHhCCCCCCCCEEEECCCH--HHHHHHHHHHHHh--cCC-CeEEEEEcCCcCCeecCcccccchhhhHHHH
Confidence 9999998765 3589999999999 9999999999998 876 99999999998771
Q ss_pred ----cc-------ceEEEeeecCCcEEEEEEe
Q 042616 158 ----WR-------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 158 ----~~-------~~~s~~lPig~Gl~v~~~~ 178 (220)
|+ +|.++++|+|||+.|+++.
T Consensus 202 ~ir~~~~~i~~~~~~~~~~lp~gdG~~i~~k~ 233 (234)
T PLN02781 202 ALLEFNKLLASDPRVEISQISIGDGVTLCRRL 233 (234)
T ss_pred HHHHHHHHHhhCCCeEEEEEEeCCccEEEEEe
Confidence 11 7999999999999999985
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-30 Score=215.86 Aligned_cols=151 Identities=25% Similarity=0.274 Sum_probs=138.5
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
..+.+.|++++|++++++..+|++.||||+ ++|||++..|.++++ +|+|+++|.| ++.++.+.+..+ |..++|++
T Consensus 53 ~~m~v~~d~g~fl~~li~~~~ak~~lelGv-fTGySaL~~Alalp~-dGrv~a~eid-~~~~~~~~~~~k~agv~~KI~~ 129 (237)
T KOG1663|consen 53 SEMLVGPDKGQFLQMLIRLLNAKRTLELGV-FTGYSALAVALALPE-DGRVVAIEID-ADAYEIGLELVKLAGVDHKITF 129 (237)
T ss_pred cceecChHHHHHHHHHHHHhCCceEEEEec-ccCHHHHHHHHhcCC-CceEEEEecC-hHHHHHhHHHHHhccccceeee
Confidence 457899999999999999999999999998 599999999999998 9999999999 999999999887 88899999
Q ss_pred EEcchhhhhhhc-----CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC---------------
Q 042616 98 VKGDAQKLLMGD-----YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS--------------- 157 (220)
Q Consensus 98 v~gda~~~L~~~-----~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~--------------- 157 (220)
++|++.+.|+++ .+.|||+|+|++| .+|.++++.+.++ |++ ||+|++||++++|.
T Consensus 130 i~g~a~esLd~l~~~~~~~tfDfaFvDadK--~nY~~y~e~~l~L--lr~-GGvi~~DNvl~~G~v~~p~~~~~~~~~~~ 204 (237)
T KOG1663|consen 130 IEGPALESLDELLADGESGTFDFAFVDADK--DNYSNYYERLLRL--LRV-GGVIVVDNVLWPGVVADPDVNTPVRGRSI 204 (237)
T ss_pred eecchhhhHHHHHhcCCCCceeEEEEccch--HHHHHHHHHHHhh--ccc-ccEEEEeccccCCcccCcccCCCcchhhh
Confidence 999999998877 3679999999999 9999999999998 875 99999999999881
Q ss_pred -----cc-------ceEEEeeecCCcEEEEEEe
Q 042616 158 -----WR-------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 158 -----~~-------~~~s~~lPig~Gl~v~~~~ 178 (220)
++ ++..+.+|+|+|+.++++.
T Consensus 205 r~~~~~n~~l~~D~rV~~s~~~igdG~~i~~k~ 237 (237)
T KOG1663|consen 205 REALNLNKKLARDPRVYISLLPIGDGITICRKR 237 (237)
T ss_pred hhhhhhhhHhccCcceeeEeeeccCceeeeccC
Confidence 11 6899999999999999863
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=131.94 Aligned_cols=134 Identities=18% Similarity=0.180 Sum_probs=119.9
Q ss_pred hHHHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHh
Q 042616 9 ATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSL 88 (220)
Q Consensus 9 a~~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l 88 (220)
....|+..++.+.+++.|.-+.++-+.+...+..+|+|.||| +|..|..||.+..+ .|+|+++|.+ +++++.|++|+
T Consensus 63 ~~~d~~~~~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtG-SG~lt~~La~~vg~-~G~v~tyE~r-~d~~k~A~~Nl 139 (256)
T COG2519 63 TPEDYLLSMKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTG-SGALTAYLARAVGP-EGHVTTYEIR-EDFAKTARENL 139 (256)
T ss_pred CHHHHHHhCcCCCceecCCCHHHHHHHcCCCCCCEEEEcccC-chHHHHHHHHhhCC-CceEEEEEec-HHHHHHHHHHH
Confidence 345688888998889999999999999999999999999997 89999999999887 8999999999 99999999999
Q ss_pred c--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 89 G--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 89 ~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+ ++.++|++..+|..+.... ..||.||+|-+. ..++++.+... |+| ||.+++++...
T Consensus 140 ~~~~l~d~v~~~~~Dv~~~~~~--~~vDav~LDmp~----PW~~le~~~~~--Lkp-gg~~~~y~P~v 198 (256)
T COG2519 140 SEFGLGDRVTLKLGDVREGIDE--EDVDAVFLDLPD----PWNVLEHVSDA--LKP-GGVVVVYSPTV 198 (256)
T ss_pred HHhccccceEEEeccccccccc--cccCEEEEcCCC----hHHHHHHHHHH--hCC-CcEEEEEcCCH
Confidence 8 8878899999999987643 599999999876 67889999998 886 99999998774
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-16 Score=131.92 Aligned_cols=124 Identities=17% Similarity=0.162 Sum_probs=101.0
Q ss_pred hHHHHHHH-Hhc--CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHH
Q 042616 9 ATKAYLQA-LKM--GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASK 85 (220)
Q Consensus 9 a~~aY~~~-l~~--~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar 85 (220)
+..||.|+ +.. ++.+..|.....+-.++...+..+||||||| +||.|..||+- .++|++||.+ ++.++.||
T Consensus 38 ~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtG-sGY~aAvla~l----~~~V~siEr~-~~L~~~A~ 111 (209)
T COG2518 38 KHLAYEDRALPIGCGQTISAPHMVARMLQLLELKPGDRVLEIGTG-SGYQAAVLARL----VGRVVSIERI-EELAEQAR 111 (209)
T ss_pred hcccccCCcccCCCCceecCcHHHHHHHHHhCCCCCCeEEEECCC-chHHHHHHHHH----hCeEEEEEEc-HHHHHHHH
Confidence 67788888 333 5678889777666677789999999999997 99999999986 5699999999 99999999
Q ss_pred HHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccH-HHHHHHHHhhcCCCCCCEEEEE
Q 042616 86 KSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGH-KNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 86 ~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y-~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|++ |+ .+|.+++||...-.+. ..+||.|++.+.- ... ..++++|+ + ||.+|+
T Consensus 112 ~~L~~lg~-~nV~v~~gDG~~G~~~-~aPyD~I~Vtaaa--~~vP~~Ll~QL~------~-gGrlv~ 167 (209)
T COG2518 112 RNLETLGY-ENVTVRHGDGSKGWPE-EAPYDRIIVTAAA--PEVPEALLDQLK------P-GGRLVI 167 (209)
T ss_pred HHHHHcCC-CceEEEECCcccCCCC-CCCcCEEEEeecc--CCCCHHHHHhcc------c-CCEEEE
Confidence 9998 77 4599999999998876 6899999999988 554 44455444 4 776554
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.3e-15 Score=130.27 Aligned_cols=144 Identities=11% Similarity=0.123 Sum_probs=116.1
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---ccCCcEEEEEc
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---RYANCIEFVKG 100 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---g~~~~Ve~v~g 100 (220)
+.+-++++|+.+... ++++|+|||||..|+++++|+....+ +++++++|.| +++++.||++++ ++.++|+|.++
T Consensus 108 L~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p-~~~~~giD~d-~~ai~~Ar~~~~~~~gL~~rV~F~~~ 184 (296)
T PLN03075 108 LSKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLP-TTSFHNFDID-PSANDVARRLVSSDPDLSKRMFFHTA 184 (296)
T ss_pred HHHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCC-CCEEEEEeCC-HHHHHHHHHHhhhccCccCCcEEEEC
Confidence 556778888888776 89999999998678999999877665 8999999999 999999999993 77788999999
Q ss_pred chhhhhhhcCCCccEEEEcC----CCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC--Ccc------------ceE
Q 042616 101 DAQKLLMGDYRGADFVLIDC----NIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG--SWR------------GYK 162 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~----~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g--~~~------------~~~ 162 (220)
|+.+..+. .++||+||+++ ++ .++.++++.+.+. |+| ||+++.-.. +| .+. +..
T Consensus 185 Da~~~~~~-l~~FDlVF~~ALi~~dk--~~k~~vL~~l~~~--LkP-GG~Lvlr~~--~G~r~~LYp~v~~~~~~gf~~~ 256 (296)
T PLN03075 185 DVMDVTES-LKEYDVVFLAALVGMDK--EEKVKVIEHLGKH--MAP-GALLMLRSA--HGARAFLYPVVDPCDLRGFEVL 256 (296)
T ss_pred chhhcccc-cCCcCEEEEeccccccc--ccHHHHHHHHHHh--cCC-CcEEEEecc--cchHhhcCCCCChhhCCCeEEE
Confidence 99986433 46899999997 45 7899999999999 876 999998763 43 111 456
Q ss_pred EEeeecCC---cEEEEEEe
Q 042616 163 THFLPIGE---GLLVTRIG 178 (220)
Q Consensus 163 s~~lPig~---Gl~v~~~~ 178 (220)
+++.|.++ -+.++++.
T Consensus 257 ~~~~P~~~v~Nsvi~~r~~ 275 (296)
T PLN03075 257 SVFHPTDEVINSVIIARKP 275 (296)
T ss_pred EEECCCCCceeeEEEEEee
Confidence 77788776 34555554
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=126.82 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=102.6
Q ss_pred hHHHHHHH-Hhc--CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHH
Q 042616 9 ATKAYLQA-LKM--GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASK 85 (220)
Q Consensus 9 a~~aY~~~-l~~--~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar 85 (220)
+..||.|. +.. ++.+..|....++..++...+..+||||||| +||.|..|+..+.. +++|+++|++ ++.++.|+
T Consensus 42 ~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~G-sG~~t~~la~~~~~-~~~V~~vE~~-~~~~~~a~ 118 (212)
T PRK13942 42 EEYAYVDTPLEIGYGQTISAIHMVAIMCELLDLKEGMKVLEIGTG-SGYHAAVVAEIVGK-SGKVVTIERI-PELAEKAK 118 (212)
T ss_pred hhcCcCCCCccCCCCCEeCcHHHHHHHHHHcCCCCcCEEEEECCc-ccHHHHHHHHhcCC-CCEEEEEeCC-HHHHHHHH
Confidence 34577776 222 4567888888888888888889999999997 99999999988765 7899999999 99999999
Q ss_pred HHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 86 KSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 86 ~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++++ ++ ++|+++++|+.+..+. ..+||+|++++.. ..+. +.+.+. |+| ||.+++.
T Consensus 119 ~~l~~~g~-~~v~~~~gd~~~~~~~-~~~fD~I~~~~~~--~~~~---~~l~~~--Lkp-gG~lvi~ 175 (212)
T PRK13942 119 KTLKKLGY-DNVEVIVGDGTLGYEE-NAPYDRIYVTAAG--PDIP---KPLIEQ--LKD-GGIMVIP 175 (212)
T ss_pred HHHHHcCC-CCeEEEECCcccCCCc-CCCcCEEEECCCc--ccch---HHHHHh--hCC-CcEEEEE
Confidence 9997 55 6799999999876543 4789999999987 5554 345555 765 8877663
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.7e-16 Score=116.61 Aligned_cols=102 Identities=21% Similarity=0.247 Sum_probs=50.8
Q ss_pred EEEcCCchHHHHHHHHHHcCCCC-cEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcC-CCccEEEEcC
Q 042616 45 VMACSSIAVSRTLALVAAARQTG-GRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDY-RGADFVLIDC 120 (220)
Q Consensus 45 LEIGtg~~G~sTl~LA~A~~~~~-grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~-~~~D~VfiD~ 120 (220)
|||||. .|+||++|++++++.+ +++++||+. +. .+.+++.++ ++.++++++.|+..+.++.+. .+||++|||+
T Consensus 1 lEiG~~-~G~st~~l~~~~~~~~~~~~~~vD~~-~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTY-SGYSTLWLASALRDNGRGKLYSVDPF-PG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp ---------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred Cccccc-cccccccccccccccccCCEEEEECC-Cc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 799995 9999999999998844 389999999 64 344555554 666789999999999998775 8999999999
Q ss_pred CCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 121 NIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 121 ~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
++..+.....++.+.++ |+| ||+||+||+
T Consensus 78 ~H~~~~~~~dl~~~~~~--l~~-ggviv~dD~ 106 (106)
T PF13578_consen 78 DHSYEAVLRDLENALPR--LAP-GGVIVFDDY 106 (106)
T ss_dssp ---HHHHHHHHHHHGGG--EEE-EEEEEEE--
T ss_pred CCCHHHHHHHHHHHHHH--cCC-CeEEEEeCc
Confidence 97556668889999998 875 999999984
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.4e-15 Score=122.96 Aligned_cols=129 Identities=16% Similarity=0.135 Sum_probs=98.8
Q ss_pred HHHHHHH-Hhc--CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHH
Q 042616 10 TKAYLQA-LKM--GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKK 86 (220)
Q Consensus 10 ~~aY~~~-l~~--~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~ 86 (220)
..+|.|. ++. ++.+..|...+.+..++...+..+||||||| +|+.|..|+..++. +++|+++|.+ +++++.|++
T Consensus 39 ~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~G-sG~~~~~la~~~~~-~g~V~~iD~~-~~~~~~a~~ 115 (205)
T PRK13944 39 MMAYEDRPLPLFAGATISAPHMVAMMCELIEPRPGMKILEVGTG-SGYQAAVCAEAIER-RGKVYTVEIV-KELAIYAAQ 115 (205)
T ss_pred hcCccCCCcccCCCCEechHHHHHHHHHhcCCCCCCEEEEECcC-ccHHHHHHHHhcCC-CCEEEEEeCC-HHHHHHHHH
Confidence 4566665 332 3345566665555555566677899999997 99999999998765 6899999999 999999999
Q ss_pred Hhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 87 SLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 87 ~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++ ++.++++++++|+.+.++. ..+||.|++++.. ..++ +.+.+. |+| ||.+++.
T Consensus 116 ~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~--~~~~---~~l~~~--L~~-gG~lvi~ 172 (205)
T PRK13944 116 NIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTAAA--STIP---SALVRQ--LKD-GGVLVIP 172 (205)
T ss_pred HHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEccCc--chhh---HHHHHh--cCc-CcEEEEE
Confidence 997 6656799999999887654 4689999999887 5444 455666 765 8887774
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=125.10 Aligned_cols=133 Identities=15% Similarity=0.054 Sum_probs=101.0
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-
Q 042616 11 KAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG- 89 (220)
Q Consensus 11 ~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~- 89 (220)
+-|...|+..-.++-|.-+.+|-..+...+..+|||.||| +|..|++|+.++.+ .|+|++.|.+ +++++.|++|++
T Consensus 11 e~~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtG-SG~lt~~l~r~v~p-~G~v~t~E~~-~~~~~~A~~n~~~ 87 (247)
T PF08704_consen 11 ELWTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTG-SGSLTHALARAVGP-TGHVYTYEFR-EDRAEKARKNFER 87 (247)
T ss_dssp HHHHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--T-TSHHHHHHHHHHTT-TSEEEEEESS-HHHHHHHHHHHHH
T ss_pred HHHHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCC-cHHHHHHHHHHhCC-CeEEEccccC-HHHHHHHHHHHHH
Confidence 3477778888888888888888889899999999999997 89999999999987 8999999999 999999999998
Q ss_pred -ccCCcEEEEEcchhh-hhh-hcCCCccEEEEcCCCCCccHHHHHHHHHhhcCC-CCCCEEEEEecCC
Q 042616 90 -RYANCIEFVKGDAQK-LLM-GDYRGADFVLIDCNIDIDGHKNVFRAAKESVMH-GSGAGVIVGYNAL 153 (220)
Q Consensus 90 -g~~~~Ve~v~gda~~-~L~-~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L-~~~Ggviv~dNv~ 153 (220)
++.++|++.++|..+ ..+ .+...+|.||+|-+. ..++++.+.+. | ++ ||.|++....
T Consensus 88 ~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~----Pw~~i~~~~~~--L~~~-gG~i~~fsP~ 148 (247)
T PF08704_consen 88 HGLDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPD----PWEAIPHAKRA--LKKP-GGRICCFSPC 148 (247)
T ss_dssp TTCCTTEEEEES-GGCG--STT-TTSEEEEEEESSS----GGGGHHHHHHH--E-EE-EEEEEEEESS
T ss_pred cCCCCCceeEecceecccccccccCcccEEEEeCCC----HHHHHHHHHHH--HhcC-CceEEEECCC
Confidence 888899999999963 332 224689999999987 33556777776 6 44 9999998654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-14 Score=107.77 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=83.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
+..+||||||| +|..+++|++..+ +.+|++||.+ +++++.|++++. +..++|+++++|+ .......++||+|+
T Consensus 1 p~~~vLDlGcG-~G~~~~~l~~~~~--~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCG-TGRLSIALARLFP--GARVVGVDIS-PEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTT-TSHHHHHHHHHHT--TSEEEEEESS-HHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEE
T ss_pred CCCEEEEEcCc-CCHHHHHHHhcCC--CCEEEEEeCC-HHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEE
Confidence 46789999997 9999999998433 7999999999 999999999993 6678999999999 44445467899999
Q ss_pred EcC-CC----CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 118 IDC-NI----DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 118 iD~-~k----~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++. .. +.....++++.+.+. |+| ||+++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~--L~p-gG~lvi~ 110 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRL--LKP-GGRLVIN 110 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHh--cCC-CcEEEEE
Confidence 999 33 001224568999998 886 8888875
|
... |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-15 Score=125.97 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=94.7
Q ss_pred hhHHHHHHH-Hhc--CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHH
Q 042616 8 NATKAYLQA-LKM--GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDAS 84 (220)
Q Consensus 8 ~a~~aY~~~-l~~--~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~A 84 (220)
....||.|+ ++. ++.+..|..-..+..++...+..+||||||| +||.|..||.-+.+ .|+|++||.+ +..++.|
T Consensus 37 ~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~l~pg~~VLeIGtG-sGY~aAlla~lvg~-~g~Vv~vE~~-~~l~~~A 113 (209)
T PF01135_consen 37 FRDLAYEDRPLPIGCGQTISAPSMVARMLEALDLKPGDRVLEIGTG-SGYQAALLAHLVGP-VGRVVSVERD-PELAERA 113 (209)
T ss_dssp GGGGTTSSS-EEEETTEEE--HHHHHHHHHHTTC-TT-EEEEES-T-TSHHHHHHHHHHST-TEEEEEEESB-HHHHHHH
T ss_pred hhcCCCCCCCeeecceeechHHHHHHHHHHHHhcCCCCEEEEecCC-CcHHHHHHHHhcCc-cceEEEECcc-HHHHHHH
Confidence 455778877 332 3456778775555555578899999999997 99999999998876 7899999999 9999999
Q ss_pred HHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 85 KKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 85 r~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++++ ++ .+|++++||+...++. ..+||.|++.+.. ...+ ..+.+. |++ ||.+|+-
T Consensus 114 ~~~l~~~~~-~nv~~~~gdg~~g~~~-~apfD~I~v~~a~--~~ip---~~l~~q--L~~-gGrLV~p 171 (209)
T PF01135_consen 114 RRNLARLGI-DNVEVVVGDGSEGWPE-EAPFDRIIVTAAV--PEIP---EALLEQ--LKP-GGRLVAP 171 (209)
T ss_dssp HHHHHHHTT-HSEEEEES-GGGTTGG-G-SEEEEEESSBB--SS-----HHHHHT--EEE-EEEEEEE
T ss_pred HHHHHHhcc-CceeEEEcchhhcccc-CCCcCEEEEeecc--chHH---HHHHHh--cCC-CcEEEEE
Confidence 99998 55 5899999999887765 5789999999988 5543 223333 444 8888874
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-14 Score=121.22 Aligned_cols=117 Identities=12% Similarity=0.079 Sum_probs=94.3
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
+.+..|...+.+..++...+..+||||||| +|+.|+.|+...++ .++|++||.+ ++.++.|+++++ ++ ++++++
T Consensus 58 ~~~~~p~~~~~~~~~l~~~~~~~VLDiG~G-sG~~a~~la~~~~~-~g~V~~vD~~-~~~~~~A~~~~~~~g~-~~v~~~ 133 (215)
T TIGR00080 58 QTISAPHMVAMMTELLELKPGMKVLEIGTG-SGYQAAVLAEIVGR-DGLVVSIERI-PELAEKAERRLRKLGL-DNVIVI 133 (215)
T ss_pred CEechHHHHHHHHHHhCCCCcCEEEEECCC-ccHHHHHHHHHhCC-CCEEEEEeCC-HHHHHHHHHHHHHCCC-CCeEEE
Confidence 345667776666667778888999999997 99999999987665 7899999999 999999999997 66 689999
Q ss_pred EcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 99 KGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 99 ~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++|+.+.++. ..+||+|++++.. ..+. +.+.+. |+| ||.+++.
T Consensus 134 ~~d~~~~~~~-~~~fD~Ii~~~~~--~~~~---~~~~~~--L~~-gG~lv~~ 176 (215)
T TIGR00080 134 VGDGTQGWEP-LAPYDRIYVTAAG--PKIP---EALIDQ--LKE-GGILVMP 176 (215)
T ss_pred ECCcccCCcc-cCCCCEEEEcCCc--cccc---HHHHHh--cCc-CcEEEEE
Confidence 9999886643 4689999999877 5554 445566 665 8887764
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.5e-14 Score=115.22 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=96.5
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhh
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLL 106 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L 106 (220)
+--|+.| +..+.++++||||| +|..|+-+|. +.+ .++|++||.| +++++..++|.+ ++ ++++++.|+|.+.|
T Consensus 24 al~ls~L-~~~~g~~l~DIGaG-tGsi~iE~a~-~~p-~~~v~AIe~~-~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L 97 (187)
T COG2242 24 ALTLSKL-RPRPGDRLWDIGAG-TGSITIEWAL-AGP-SGRVIAIERD-EEALELIERNAARFGV-DNLEVVEGDAPEAL 97 (187)
T ss_pred HHHHHhh-CCCCCCEEEEeCCC-ccHHHHHHHH-hCC-CceEEEEecC-HHHHHHHHHHHHHhCC-CcEEEEeccchHhh
Confidence 4445555 67788999999997 9999999994 444 7999999999 999999999998 74 89999999999999
Q ss_pred hhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 107 MGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+.+. .+|.|||.+.. .+..+++.+... |+| ||.||++=+..
T Consensus 98 ~~~~-~~daiFIGGg~---~i~~ile~~~~~--l~~-ggrlV~naitl 138 (187)
T COG2242 98 PDLP-SPDAIFIGGGG---NIEEILEAAWER--LKP-GGRLVANAITL 138 (187)
T ss_pred cCCC-CCCEEEECCCC---CHHHHHHHHHHH--cCc-CCeEEEEeecH
Confidence 8744 79999999985 789999999999 875 99999975543
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=115.41 Aligned_cols=110 Identities=19% Similarity=0.172 Sum_probs=93.8
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
...+...|||+||| +|+.++.++..+.+ +++|++||.+ +++++.|+++++ ++.++++++.+|+.+.++...+.||
T Consensus 37 ~~~~~~~vlDlG~G-tG~~s~~~a~~~~~-~~~v~avD~~-~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 37 RLRKGDMILDIGCG-TGSVTVEASLLVGE-TGKVYAVDKD-EKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred CCCCcCEEEEeCCc-CCHHHHHHHHHhCC-CCEEEEEECC-HHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCC
Confidence 44567899999997 89999999887655 6899999999 999999999997 5457899999999988876557899
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+||+++.. ..+.++++.+.+. |+| ||.++.+.+..
T Consensus 114 ~V~~~~~~--~~~~~~l~~~~~~--Lkp-gG~lv~~~~~~ 148 (198)
T PRK00377 114 RIFIGGGS--EKLKEIISASWEI--IKK-GGRIVIDAILL 148 (198)
T ss_pred EEEECCCc--ccHHHHHHHHHHH--cCC-CcEEEEEeecH
Confidence 99998877 7889999999998 876 89888876543
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-13 Score=117.95 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=90.5
Q ss_pred HHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcC
Q 042616 33 SALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDY 110 (220)
Q Consensus 33 ~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~ 110 (220)
..++...++++|||||+| .|+++.+++...+ +.+|++||.| |+.++.|++++. +..++++++++|+.++++...
T Consensus 59 ~~l~~~~~~~~vL~IG~G-~G~l~~~l~~~~p--~~~v~~VEid-p~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~ 134 (262)
T PRK04457 59 GFLLFNPRPQHILQIGLG-GGSLAKFIYTYLP--DTRQTAVEIN-PQVIAVARNHFELPENGERFEVIEADGAEYIAVHR 134 (262)
T ss_pred HHHhcCCCCCEEEEECCC-HhHHHHHHHHhCC--CCeEEEEECC-HHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCC
Confidence 344445578999999996 8999999998764 6899999999 999999999987 344789999999999987655
Q ss_pred CCccEEEEcCCCCCc-----cHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 111 RGADFVLIDCNIDID-----GHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 111 ~~~D~VfiD~~k~~~-----~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++||+||+|+..... ...++++.+.+. |+| ||++++.
T Consensus 135 ~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~--L~p-gGvlvin 176 (262)
T PRK04457 135 HSTDVILVDGFDGEGIIDALCTQPFFDDCRNA--LSS-DGIFVVN 176 (262)
T ss_pred CCCCEEEEeCCCCCCCccccCcHHHHHHHHHh--cCC-CcEEEEE
Confidence 789999999865111 137899999998 876 8888884
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.5e-13 Score=110.58 Aligned_cols=123 Identities=14% Similarity=0.102 Sum_probs=99.3
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
+.++..++..+++...+...+..+|||+||| +|+.|++++...+ +++|++||.+ +++++.|+++++ ++ +++++
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G-~G~~~~~la~~~~--~~~V~~vD~s-~~~~~~a~~n~~~~~~-~~v~~ 94 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAG-TGTIPVEAGLLCP--KGRVIAIERD-EEVVNLIRRNCDRFGV-KNVEV 94 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCC-CCHHHHHHHHHCC--CCEEEEEeCC-HHHHHHHHHHHHHhCC-CCeEE
Confidence 3456677777777777677777899999997 9999999987543 5899999999 999999999997 55 57999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+++|+.+.++.+...+|.+++|+.. ...++++.+.+. |+| ||.+++....
T Consensus 95 ~~~d~~~~~~~~~~~~d~v~~~~~~---~~~~~l~~~~~~--Lkp-gG~li~~~~~ 144 (196)
T PRK07402 95 IEGSAPECLAQLAPAPDRVCIEGGR---PIKEILQAVWQY--LKP-GGRLVATASS 144 (196)
T ss_pred EECchHHHHhhCCCCCCEEEEECCc---CHHHHHHHHHHh--cCC-CeEEEEEeec
Confidence 9999988665544567999998754 567889999998 876 8888877543
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.6e-13 Score=100.53 Aligned_cols=107 Identities=18% Similarity=0.108 Sum_probs=88.0
Q ss_pred HHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCC
Q 042616 34 ALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYR 111 (220)
Q Consensus 34 ~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~ 111 (220)
......+.++|||+||| +|..+..++...+ .++|+++|.+ +.+++.|+++++ ++ .+++++.+|+.+.++....
T Consensus 13 ~~~~~~~~~~vldlG~G-~G~~~~~l~~~~~--~~~v~~vD~s-~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGAG-SGSITIEAARLVP--NGRVYAIERN-PEALRLIERNARRFGV-SNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHcCCCCCCEEEEeCCC-CCHHHHHHHHHCC--CceEEEEcCC-HHHHHHHHHHHHHhCC-CceEEEeccccccChhhcC
Confidence 33344556799999997 8999999998754 4899999999 999999999987 44 4799999998765544456
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+||+|+++... ..+.++++.+.+. |+| ||.+++.
T Consensus 88 ~~D~v~~~~~~--~~~~~~l~~~~~~--Lk~-gG~li~~ 121 (124)
T TIGR02469 88 EPDRVFIGGSG--GLLQEILEAIWRR--LRP-GGRIVLN 121 (124)
T ss_pred CCCEEEECCcc--hhHHHHHHHHHHH--cCC-CCEEEEE
Confidence 89999999877 7788999999999 876 8887764
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.1e-13 Score=112.42 Aligned_cols=113 Identities=16% Similarity=0.088 Sum_probs=91.3
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
.+..|.....+..++...+..+|||+||| +|+.|..|+.. .++|++||.+ +++++.|+++++ ++ +++++++
T Consensus 60 ~~~~p~~~~~l~~~l~~~~~~~VLeiG~G-sG~~t~~la~~----~~~v~~vd~~-~~~~~~a~~~~~~~~~-~~v~~~~ 132 (212)
T PRK00312 60 TISQPYMVARMTELLELKPGDRVLEIGTG-SGYQAAVLAHL----VRRVFSVERI-KTLQWEAKRRLKQLGL-HNVSVRH 132 (212)
T ss_pred eeCcHHHHHHHHHhcCCCCCCEEEEECCC-ccHHHHHHHHH----hCEEEEEeCC-HHHHHHHHHHHHHCCC-CceEEEE
Confidence 46788888888877788888999999997 99999988875 3589999999 999999999997 55 4699999
Q ss_pred cchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 100 GDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 100 gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+|+.+.++. .++||+|++++.. ..+. +.+.+. |+| ||.+++.
T Consensus 133 ~d~~~~~~~-~~~fD~I~~~~~~--~~~~---~~l~~~--L~~-gG~lv~~ 174 (212)
T PRK00312 133 GDGWKGWPA-YAPFDRILVTAAA--PEIP---RALLEQ--LKE-GGILVAP 174 (212)
T ss_pred CCcccCCCc-CCCcCEEEEccCc--hhhh---HHHHHh--cCC-CcEEEEE
Confidence 998776543 4689999999877 5544 455666 766 7877664
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.7e-13 Score=109.33 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=84.3
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCc
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGA 113 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~ 113 (220)
+...++++|||+||| +|+.++.|+... + +++|++||.+ +++++.++++++ ++ ++++++++|+.++.+ .++|
T Consensus 38 ~~~~~~~~vLDiGcG-tG~~s~~la~~~-~-~~~V~~iD~s-~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~~~--~~~f 110 (181)
T TIGR00138 38 LEYLDGKKVIDIGSG-AGFPGIPLAIAR-P-ELKLTLLESN-HKKVAFLREVKAELGL-NNVEIVNGRAEDFQH--EEQF 110 (181)
T ss_pred HHhcCCCeEEEecCC-CCccHHHHHHHC-C-CCeEEEEeCc-HHHHHHHHHHHHHhCC-CCeEEEecchhhccc--cCCc
Confidence 344568999999997 999999998653 3 5899999999 999999999987 55 469999999988532 4789
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+|+.++ . ..+.++++.+.+. |+| ||++++.
T Consensus 111 D~I~s~~-~--~~~~~~~~~~~~~--Lkp-gG~lvi~ 141 (181)
T TIGR00138 111 DVITSRA-L--ASLNVLLELTLNL--LKV-GGYFLAY 141 (181)
T ss_pred cEEEehh-h--hCHHHHHHHHHHh--cCC-CCEEEEE
Confidence 9999998 5 6788999999888 886 7776654
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-12 Score=108.89 Aligned_cols=98 Identities=13% Similarity=0.041 Sum_probs=82.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
++.+|||+||| +|+.++.++.+.+ +++|++||++ +++++.|+++++ ++ ++++++++|+.+.. . .++||+|+
T Consensus 45 ~g~~VLDiGcG-tG~~al~la~~~~--~~~V~giD~s-~~~l~~A~~~~~~~~l-~~i~~~~~d~~~~~-~-~~~fDlV~ 117 (187)
T PRK00107 45 GGERVLDVGSG-AGFPGIPLAIARP--ELKVTLVDSL-GKKIAFLREVAAELGL-KNVTVVHGRAEEFG-Q-EEKFDVVT 117 (187)
T ss_pred CCCeEEEEcCC-CCHHHHHHHHHCC--CCeEEEEeCc-HHHHHHHHHHHHHcCC-CCEEEEeccHhhCC-C-CCCccEEE
Confidence 37899999997 9999999998643 6899999999 999999999997 66 34999999998854 3 57899999
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.++. .++.++++.+.+. |+| ||.+++-
T Consensus 118 ~~~~---~~~~~~l~~~~~~--Lkp-GG~lv~~ 144 (187)
T PRK00107 118 SRAV---ASLSDLVELCLPL--LKP-GGRFLAL 144 (187)
T ss_pred Eccc---cCHHHHHHHHHHh--cCC-CeEEEEE
Confidence 9873 5788999999999 887 6665554
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=107.65 Aligned_cols=119 Identities=13% Similarity=0.050 Sum_probs=95.4
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
+..+...+++..++...+..+|||+||| +|+.++.++...+ +++|+++|.+ +++++.|+++++ ++ .+++++++
T Consensus 14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G-~G~~~~~la~~~~--~~~v~~vD~s-~~~~~~a~~n~~~~~~-~~i~~~~~ 88 (187)
T PRK08287 14 MTKEEVRALALSKLELHRAKHLIDVGAG-TGSVSIEAALQFP--SLQVTAIERN-PDALRLIKENRQRFGC-GNIDIIPG 88 (187)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEECCc-CCHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHHHHHHhCC-CCeEEEec
Confidence 4445555555555566688999999997 9999999998653 5899999999 999999999987 55 57999999
Q ss_pred chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|+...+ ..+||+||+++.. ..+.++++.+.+. |+| ||.+++..+..
T Consensus 89 d~~~~~---~~~~D~v~~~~~~--~~~~~~l~~~~~~--Lk~-gG~lv~~~~~~ 134 (187)
T PRK08287 89 EAPIEL---PGKADAIFIGGSG--GNLTAIIDWSLAH--LHP-GGRLVLTFILL 134 (187)
T ss_pred Cchhhc---CcCCCEEEECCCc--cCHHHHHHHHHHh--cCC-CeEEEEEEecH
Confidence 986433 3579999999877 7788899999998 876 88888875543
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.1e-12 Score=106.00 Aligned_cols=120 Identities=10% Similarity=0.010 Sum_probs=90.5
Q ss_pred CChhHHH----HHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 24 KEPDVGE----FISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 24 ~~p~~~~----~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
..|.... ++..+....+..+|||+||| +|+.++.++.. ...+|++||.+ ++.++.|++|++ ++ +++++
T Consensus 33 ~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~G-sG~l~l~~lsr---~a~~V~~vE~~-~~a~~~a~~Nl~~~~~-~~v~~ 106 (199)
T PRK10909 33 LRPTTDRVRETLFNWLAPVIVDARCLDCFAG-SGALGLEALSR---YAAGATLLEMD-RAVAQQLIKNLATLKA-GNARV 106 (199)
T ss_pred cCcCCHHHHHHHHHHHhhhcCCCEEEEcCCC-ccHHHHHHHHc---CCCEEEEEECC-HHHHHHHHHHHHHhCC-CcEEE
Confidence 3455544 45555554567899999997 99999853321 14699999999 999999999997 55 57999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++|+.+.++....+||+||+|++-+.+.+...++.+...++|.+ +++|++.
T Consensus 107 ~~~D~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~-~~iv~ve 158 (199)
T PRK10909 107 VNTNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLAD-EALIYVE 158 (199)
T ss_pred EEchHHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCC-CcEEEEE
Confidence 999999888653457999999999323667788888888665655 7777664
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.5e-12 Score=108.91 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=97.8
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~ 107 (220)
+.+-.+....++.+|||+||| ||-.|+.+++..+ .|+|+.+|++ +.+++.|++.+. +..+ |+|++|||++ ||
T Consensus 41 ~~~i~~~~~~~g~~vLDva~G-TGd~a~~~~k~~g--~g~v~~~D~s-~~ML~~a~~k~~~~~~~~-i~fv~~dAe~-LP 114 (238)
T COG2226 41 RALISLLGIKPGDKVLDVACG-TGDMALLLAKSVG--TGEVVGLDIS-ESMLEVAREKLKKKGVQN-VEFVVGDAEN-LP 114 (238)
T ss_pred HHHHHhhCCCCCCEEEEecCC-ccHHHHHHHHhcC--CceEEEEECC-HHHHHHHHHHhhccCccc-eEEEEechhh-CC
Confidence 333334344478999999996 9999999999987 6999999999 999999999997 5544 9999999999 56
Q ss_pred hcCCCccEEEEcCCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 108 GDYRGADFVLIDCNIDI-DGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
--+++||+|.+.-.-++ .++...|+.+.+. |+| ||.+++.....+.
T Consensus 115 f~D~sFD~vt~~fglrnv~d~~~aL~E~~RV--lKp-gG~~~vle~~~p~ 161 (238)
T COG2226 115 FPDNSFDAVTISFGLRNVTDIDKALKEMYRV--LKP-GGRLLVLEFSKPD 161 (238)
T ss_pred CCCCccCEEEeeehhhcCCCHHHHHHHHHHh--hcC-CeEEEEEEcCCCC
Confidence 54689999999876633 5778999999999 886 9999998888754
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=105.69 Aligned_cols=113 Identities=14% Similarity=0.195 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchh
Q 042616 26 PDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQ 103 (220)
Q Consensus 26 p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~ 103 (220)
.+..++|..+. .++.+|||+||| +|+.++.|+.. +.+|+++|++ +++++.|++++. ++.++++++++|+.
T Consensus 32 ~~~~~~l~~l~--~~~~~vLDiGcG-~G~~a~~la~~----g~~v~~vD~s-~~~l~~a~~~~~~~g~~~~v~~~~~d~~ 103 (255)
T PRK11036 32 QDLDRLLAELP--PRPLRVLDAGGG-EGQTAIKLAEL----GHQVILCDLS-AEMIQRAKQAAEAKGVSDNMQFIHCAAQ 103 (255)
T ss_pred HHHHHHHHhcC--CCCCEEEEeCCC-chHHHHHHHHc----CCEEEEEECC-HHHHHHHHHHHHhcCCccceEEEEcCHH
Confidence 34455555553 457899999997 99999999873 6799999999 999999999986 66678999999999
Q ss_pred hhhhhcCCCccEEEEcCCCC-CccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 104 KLLMGDYRGADFVLIDCNID-IDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
++.+...++||+|+...... -.+...+++.+.+. |+| ||.+++
T Consensus 104 ~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~--Lkp-gG~l~i 147 (255)
T PRK11036 104 DIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSV--LRP-GGALSL 147 (255)
T ss_pred HHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHH--cCC-CeEEEE
Confidence 86544357899999775431 13556789999998 886 777754
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.7e-11 Score=105.48 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=90.9
Q ss_pred CChhHHHHHHHHHh----hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 24 KEPDVGEFISALAA----GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 24 ~~p~~~~~L~~La~----~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
..|++.+++...+. ..++.+|||+||| +|..++.|+...+ +.+|+++|.+ +++++.|++|++ ++.++|++
T Consensus 101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~G-sG~i~~~la~~~~--~~~v~avDis-~~al~~A~~n~~~~~~~~~i~~ 176 (284)
T TIGR03533 101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTG-SGCIAIACAYAFP--EAEVDAVDIS-PDALAVAEINIERHGLEDRVTL 176 (284)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEeCc-hhHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHHHHHHcCCCCcEEE
Confidence 45667777766544 2346799999997 9999999998654 5799999999 999999999997 66678999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCC--------------------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDI--------------------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~--------------------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++|..+.++ ..+||+|+.|++.-. ..|..+++.+.+. |+| ||.+++.
T Consensus 177 ~~~D~~~~~~--~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~--L~~-gG~l~~e 250 (284)
T TIGR03533 177 IQSDLFAALP--GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADH--LNE-NGVLVVE 250 (284)
T ss_pred EECchhhccC--CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHh--cCC-CCEEEEE
Confidence 9999977654 257999999865300 1245667777788 876 8888875
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=103.41 Aligned_cols=129 Identities=10% Similarity=0.006 Sum_probs=97.1
Q ss_pred HHHHHHHhc-----CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHH
Q 042616 11 KAYLQALKM-----GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASK 85 (220)
Q Consensus 11 ~aY~~~l~~-----~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar 85 (220)
..|++++.. .-..++|...+++..+.. ++.+|||+||| +|..+..|+...+ +.+|++||++ +++++.|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~VLDiGcG-tG~~~~~la~~~p--~~~v~gVD~s-~~~i~~a~ 81 (202)
T PRK00121 8 RGRLTKGQQRAIEELWPRLSPAPLDWAELFGN--DAPIHLEIGFG-KGEFLVEMAKANP--DINFIGIEVH-EPGVGKAL 81 (202)
T ss_pred ccccccchhhhhcccchhhcCCCCCHHHHcCC--CCCeEEEEccC-CCHHHHHHHHHCC--CccEEEEEec-hHHHHHHH
Confidence 345555443 235677888889888877 67899999997 9999999988654 5799999999 99999999
Q ss_pred HHhc--ccCCcEEEEEcchhhhhhh-c-CCCccEEEEcCCC---------CCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 86 KSLG--RYANCIEFVKGDAQKLLMG-D-YRGADFVLIDCNI---------DIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 86 ~~l~--g~~~~Ve~v~gda~~~L~~-~-~~~~D~VfiD~~k---------~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
++++ ++ .+++++++|+.+.++. . .+.||.|++.... +...+..+++.+.+. |+| ||++++
T Consensus 82 ~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~--Lkp-gG~l~i 154 (202)
T PRK00121 82 KKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARK--LKP-GGEIHF 154 (202)
T ss_pred HHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHH--cCC-CCEEEE
Confidence 9987 55 6799999999444542 2 3679999985321 001257889999998 887 666554
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-11 Score=113.87 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=97.1
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
...+....+.++..++...+.++|||+||| +|..|+.++..+.+ .++|+++|.+ +.+++.+++|++ ++ ++|+++
T Consensus 231 ~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG-~G~~t~~la~~~~~-~~~v~avDi~-~~~l~~~~~n~~~~g~-~~v~~~ 306 (444)
T PRK14902 231 LITIQDESSMLVAPALDPKGGDTVLDACAA-PGGKTTHIAELLKN-TGKVVALDIH-EHKLKLIEENAKRLGL-TNIETK 306 (444)
T ss_pred eEEEEChHHHHHHHHhCCCCCCEEEEeCCC-CCHHHHHHHHHhCC-CCEEEEEeCC-HHHHHHHHHHHHHcCC-CeEEEE
Confidence 344555567777777777788999999996 99999999987754 6899999999 999999999997 66 459999
Q ss_pred EcchhhhhhhcCCCccEEEEcCCCCC-c----------------------cHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 99 KGDAQKLLMGDYRGADFVLIDCNIDI-D----------------------GHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 99 ~gda~~~L~~~~~~~D~VfiD~~k~~-~----------------------~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
++|+.+..+.+.+.||+||+|++-.. + ...++++.+.+. |+| ||.+|...+.
T Consensus 307 ~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~--Lkp-GG~lvystcs 381 (444)
T PRK14902 307 ALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQY--LKK-GGILVYSTCT 381 (444)
T ss_pred eCCcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHH--cCC-CCEEEEEcCC
Confidence 99998865433468999999987310 0 013567888888 876 8888865443
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=106.40 Aligned_cols=134 Identities=19% Similarity=0.161 Sum_probs=83.1
Q ss_pred HHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhh
Q 042616 31 FISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 31 ~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~ 108 (220)
.+..++...++.+|||+||| +|..|..|+..+.+ .++|+++|++ +.+++.|++.+. +. .+|+++++|+++ ||.
T Consensus 38 ~~~~~~~~~~g~~vLDv~~G-tG~~~~~l~~~~~~-~~~v~~vD~s-~~ML~~a~~k~~~~~~-~~i~~v~~da~~-lp~ 112 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACG-TGDVTRELARRVGP-NGKVVGVDIS-PGMLEVARKKLKREGL-QNIEFVQGDAED-LPF 112 (233)
T ss_dssp HHHHHHT--S--EEEEET-T-TSHHHHHHGGGSS----EEEEEES--HHHHHHHHHHHHHTT---SEEEEE-BTTB---S
T ss_pred HHHhccCCCCCCEEEEeCCC-hHHHHHHHHHHCCC-ccEEEEecCC-HHHHHHHHHHHHhhCC-CCeeEEEcCHHH-hcC
Confidence 44445567788999999997 99999999988776 7899999999 999999999987 44 589999999998 454
Q ss_pred cCCCccEEEEcCCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC-cc-----ceEEEeeecCCcE
Q 042616 109 DYRGADFVLIDCNIDI-DGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS-WR-----GYKTHFLPIGEGL 172 (220)
Q Consensus 109 ~~~~~D~VfiD~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~-~~-----~~~s~~lPig~Gl 172 (220)
-.++||.|++--.-++ .+....++.+.+. |+| ||.+++-+...+.. +. -+-..++|+-..+
T Consensus 113 ~d~sfD~v~~~fglrn~~d~~~~l~E~~RV--LkP-GG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l 180 (233)
T PF01209_consen 113 PDNSFDAVTCSFGLRNFPDRERALREMYRV--LKP-GGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRL 180 (233)
T ss_dssp -TT-EEEEEEES-GGG-SSHHHHHHHHHHH--EEE-EEEEEEEEEEB-SSHHHHHHHHH------------
T ss_pred CCCceeEEEHHhhHHhhCCHHHHHHHHHHH--cCC-CeEEEEeeccCCCCchhhceeeeeecccccccccc
Confidence 4689999998765421 5678899999999 887 88766655544332 11 2333467754444
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.3e-11 Score=107.65 Aligned_cols=127 Identities=12% Similarity=0.141 Sum_probs=92.9
Q ss_pred HHHHHHH-Hhc---C---CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHH
Q 042616 10 TKAYLQA-LKM---G---KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDID 82 (220)
Q Consensus 10 ~~aY~~~-l~~---~---~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~ 82 (220)
..+|.|. +.. + +.+..|..-..+...+...+.++||||||| +|+.++.|++..+. .++|++||.+ +++++
T Consensus 43 ~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~-~g~VvgVDis-~~~l~ 119 (322)
T PRK13943 43 SYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGE-KGLVVSVEYS-RKICE 119 (322)
T ss_pred hhccCCCcccccCCCcccccCCcHHHHHHHHHhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCC-CCEEEEEECC-HHHHH
Confidence 4567666 321 2 234556654444444456677899999997 99999999987654 5789999999 99999
Q ss_pred HHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 83 ASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 83 ~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.|+++++ ++ ++++++++|+.+.++. ..+||+|++++.. .+.+ +.+.+. |+| ||.+++
T Consensus 120 ~Ar~~l~~~g~-~nV~~i~gD~~~~~~~-~~~fD~Ii~~~g~--~~ip---~~~~~~--Lkp-gG~Lvv 178 (322)
T PRK13943 120 IAKRNVRRLGI-ENVIFVCGDGYYGVPE-FAPYDVIFVTVGV--DEVP---ETWFTQ--LKE-GGRVIV 178 (322)
T ss_pred HHHHHHHHcCC-CcEEEEeCChhhcccc-cCCccEEEECCch--HHhH---HHHHHh--cCC-CCEEEE
Confidence 9999987 55 6799999999887654 4679999999876 4443 334455 666 666555
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-11 Score=98.75 Aligned_cols=112 Identities=13% Similarity=0.130 Sum_probs=85.5
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~ 107 (220)
++|...+...+.++|||+||| +|..++.++...+ ..+|+++|.+ +.+++.|++|++ ++.+ ++++..|..+.++
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G-~G~i~~~la~~~~--~~~v~~vDi~-~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~ 95 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCG-SGVISLALAKRGP--DAKVTAVDIN-PDALELAKRNAERNGLEN-VEVVQSDLFEALP 95 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETST-TSHHHHHHHHTST--CEEEEEEESB-HHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC
T ss_pred HHHHHHHhhccCCeEEEecCC-hHHHHHHHHHhCC--CCEEEEEcCC-HHHHHHHHHHHHhcCccc-ccccccccccccc
Confidence 455555555588999999997 9999999998654 4689999999 999999999998 5644 9999999988765
Q ss_pred hcCCCccEEEEcCCCCCc------cHHHHHHHHHhhcCCCCCCEEE-EEec
Q 042616 108 GDYRGADFVLIDCNIDID------GHKNVFRAAKESVMHGSGAGVI-VGYN 151 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k~~~------~y~~~l~~l~~~~~L~~~Ggvi-v~dN 151 (220)
..+||+|+.+.+.... ...+.++.+.+. |+| ||.+ ++.+
T Consensus 96 --~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~--Lk~-~G~l~lv~~ 141 (170)
T PF05175_consen 96 --DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRY--LKP-GGRLFLVIN 141 (170)
T ss_dssp --TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHH--EEE-EEEEEEEEE
T ss_pred --ccceeEEEEccchhcccccchhhHHHHHHHHHHh--ccC-CCEEEEEee
Confidence 4789999999866222 246778888888 887 6654 4443
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.6e-11 Score=102.10 Aligned_cols=128 Identities=17% Similarity=0.198 Sum_probs=94.6
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhH
Q 042616 1 MSSWSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGD 80 (220)
Q Consensus 1 ~~~w~~e~a~~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~ 80 (220)
|-.|+|+...+ |.+. ....++.|...+...+.++||||||| +|..+..|+...+ +++|++||++ +.+
T Consensus 1 ~~~w~~~~Y~~-~~~~--------~~~~~~~ll~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~--~~~v~gvD~s-~~~ 67 (258)
T PRK01683 1 MSDWNPSLYLK-FEDE--------RTRPARDLLARVPLENPRYVVDLGCG-PGNSTELLVERWP--AARITGIDSS-PAM 67 (258)
T ss_pred CCCCCHHHHHH-HHHH--------hhcHHHHHHhhCCCcCCCEEEEEccc-CCHHHHHHHHHCC--CCEEEEEECC-HHH
Confidence 77899986543 2221 12233333333355677899999997 9999999998753 6899999999 999
Q ss_pred HHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCC-CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 81 IDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNID-IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 81 ~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++.|++++ .+++++.+|+.+..+ ..+||+|+....-+ -.+...+++.+.+. |+| ||.+++.
T Consensus 68 i~~a~~~~----~~~~~~~~d~~~~~~--~~~fD~v~~~~~l~~~~d~~~~l~~~~~~--Lkp-gG~~~~~ 129 (258)
T PRK01683 68 LAEARSRL----PDCQFVEADIASWQP--PQALDLIFANASLQWLPDHLELFPRLVSL--LAP-GGVLAVQ 129 (258)
T ss_pred HHHHHHhC----CCCeEEECchhccCC--CCCccEEEEccChhhCCCHHHHHHHHHHh--cCC-CcEEEEE
Confidence 99999876 468999999987653 36899999876541 14667889999998 886 8877763
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-11 Score=96.35 Aligned_cols=105 Identities=14% Similarity=0.208 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CCCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~~~D~ 115 (220)
.+..+|||+||| +|..+..|+....+ ++++++||.+ +++++.|++.++ ++ ++++|+++|..+ ++.. .+.||+
T Consensus 2 ~~~~~iLDlGcG-~G~~~~~l~~~~~~-~~~i~gvD~s-~~~i~~a~~~~~~~~~-~ni~~~~~d~~~-l~~~~~~~~D~ 76 (152)
T PF13847_consen 2 KSNKKILDLGCG-TGRLLIQLAKELNP-GAKIIGVDIS-EEMIEYAKKRAKELGL-DNIEFIQGDIED-LPQELEEKFDI 76 (152)
T ss_dssp TTTSEEEEET-T-TSHHHHHHHHHSTT-TSEEEEEESS-HHHHHHHHHHHHHTTS-TTEEEEESBTTC-GCGCSSTTEEE
T ss_pred CCCCEEEEecCc-CcHHHHHHHHhcCC-CCEEEEEECc-HHHHHHhhcccccccc-cccceEEeehhc-cccccCCCeeE
Confidence 456899999997 99999999975555 8999999999 999999999987 66 489999999999 7542 268999
Q ss_pred EEEcCCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 116 VLIDCNIDI-DGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 116 VfiD~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
|+..+.... .+....++.+.+. |++ ||++++-+
T Consensus 77 I~~~~~l~~~~~~~~~l~~~~~~--lk~-~G~~i~~~ 110 (152)
T PF13847_consen 77 IISNGVLHHFPDPEKVLKNIIRL--LKP-GGILIISD 110 (152)
T ss_dssp EEEESTGGGTSHHHHHHHHHHHH--EEE-EEEEEEEE
T ss_pred EEEcCchhhccCHHHHHHHHHHH--cCC-CcEEEEEE
Confidence 999865311 4556789999998 876 66666543
|
... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.9e-11 Score=118.80 Aligned_cols=112 Identities=9% Similarity=0.063 Sum_probs=89.7
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccC-CcEEEEEcchhhhhhhcCC
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYA-NCIEFVKGDAQKLLMGDYR 111 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~-~~Ve~v~gda~~~L~~~~~ 111 (220)
++...++++|||+||| +|.++++++.+- ..+|++||.+ +.+++.|++|++ ++. ++++++++|+.+.++....
T Consensus 533 ~~~~~~g~rVLDlf~g-tG~~sl~aa~~G---a~~V~~vD~s-~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~ 607 (702)
T PRK11783 533 IGQMAKGKDFLNLFAY-TGTASVHAALGG---AKSTTTVDMS-NTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEARE 607 (702)
T ss_pred HHHhcCCCeEEEcCCC-CCHHHHHHHHCC---CCEEEEEeCC-HHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCC
Confidence 4444567999999996 999999988741 3479999999 999999999997 665 5899999999998866556
Q ss_pred CccEEEEcCCCC------------CccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 112 GADFVLIDCNID------------IDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 112 ~~D~VfiD~~k~------------~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+||+||+|++.- ...|.++++.+.++ |+| ||++++.+...
T Consensus 608 ~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~l--L~~-gG~l~~~~~~~ 659 (702)
T PRK11783 608 QFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRL--LRP-GGTLYFSNNKR 659 (702)
T ss_pred CcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHH--cCC-CCEEEEEeCCc
Confidence 899999998741 13577888888888 876 88877765443
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.9e-11 Score=109.07 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=85.6
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccC-CcEEEEEcchhhhhhhc---C
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYA-NCIEFVKGDAQKLLMGD---Y 110 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~-~~Ve~v~gda~~~L~~~---~ 110 (220)
...+.++|||+||| +|.+++.++. +. ..+|++||.+ +.+++.|++|++ ++. ++++++++|+.+.++.+ .
T Consensus 217 ~~~~g~rVLDlfsg-tG~~~l~aa~--~g-a~~V~~VD~s-~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~ 291 (396)
T PRK15128 217 RYVENKRVLNCFSY-TGGFAVSALM--GG-CSQVVSVDTS-QEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRG 291 (396)
T ss_pred HhcCCCeEEEeccC-CCHHHHHHHh--CC-CCEEEEEECC-HHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcC
Confidence 34567899999996 9998876553 22 4699999999 999999999997 664 57999999999988654 3
Q ss_pred CCccEEEEcCCCCC----------ccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 111 RGADFVLIDCNIDI----------DGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 111 ~~~D~VfiD~~k~~----------~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
++||+||+|++.-. ..|.++++.+.+. |+| ||+++.-+..
T Consensus 292 ~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~l--Lk~-gG~lv~~scs 341 (396)
T PRK15128 292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQL--LNP-GGILLTFSCS 341 (396)
T ss_pred CCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHH--cCC-CeEEEEEeCC
Confidence 57999999988511 2477888888888 876 8887765543
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-10 Score=97.55 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=86.2
Q ss_pred HHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCC
Q 042616 34 ALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYR 111 (220)
Q Consensus 34 ~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~ 111 (220)
......+.++|||+||| +|..+..|+...++ +++|+++|.+ +++++.|+++++ ++ ++++++++|+.+. +...+
T Consensus 39 ~~l~~~~~~~vLDiGcG-~G~~~~~la~~~~~-~~~v~gvD~s-~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~~~~~ 113 (231)
T TIGR02752 39 KRMNVQAGTSALDVCCG-TADWSIALAEAVGP-EGHVIGLDFS-ENMLSVGRQKVKDAGL-HNVELVHGNAMEL-PFDDN 113 (231)
T ss_pred HhcCCCCCCEEEEeCCC-cCHHHHHHHHHhCC-CCEEEEEECC-HHHHHHHHHHHHhcCC-CceEEEEechhcC-CCCCC
Confidence 33355567899999997 99999999988765 7899999999 999999999986 44 6799999999874 32246
Q ss_pred CccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 112 GADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 112 ~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+||+|+++... ...++...++.+.+. |+| ||.+++-
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~l~~~~~~--Lk~-gG~l~~~ 150 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDYMQVLREMYRV--VKP-GGKVVCL 150 (231)
T ss_pred CccEEEEecccccCCCHHHHHHHHHHH--cCc-CeEEEEE
Confidence 89999987543 115678889999988 876 7776654
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.2e-11 Score=110.42 Aligned_cols=127 Identities=14% Similarity=0.163 Sum_probs=98.1
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
+...+....++++..++...+..+|||+||| +|..|+.++..+.. +|+|+++|.+ +.+++.++++++ |+ ++|++
T Consensus 217 G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cag-pGgkt~~la~~~~~-~g~V~a~Dis-~~rl~~~~~n~~r~g~-~~v~~ 292 (431)
T PRK14903 217 GLATVQGESSQIVPLLMELEPGLRVLDTCAA-PGGKTTAIAELMKD-QGKILAVDIS-REKIQLVEKHAKRLKL-SSIEI 292 (431)
T ss_pred CeEEEECHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCC-CCEEEEEECC-HHHHHHHHHHHHHcCC-CeEEE
Confidence 3344555567777777778888999999996 99999999988765 7899999999 999999999997 66 46999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCCc-----------------------cHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDID-----------------------GHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~~-----------------------~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+++|+.++.....+.||.|++|++-... ...++++.+.+. |+| ||.+|.--..
T Consensus 293 ~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~--Lkp-GG~LvYsTCs 368 (431)
T PRK14903 293 KIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKL--LEK-GGILLYSTCT 368 (431)
T ss_pred EECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHh--cCC-CCEEEEEECC
Confidence 9999987532234679999999865111 124557777887 876 8887766554
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.7e-11 Score=102.62 Aligned_cols=118 Identities=11% Similarity=0.071 Sum_probs=89.9
Q ss_pred hHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhh
Q 042616 27 DVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQK 104 (220)
Q Consensus 27 ~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~ 104 (220)
....+...+....+..+|||+||| +|..|+.||..+.. .|+|+++|.+ +.+++.++++++ ++ .+|+++++|+..
T Consensus 58 ~~s~~~~~~l~~~~g~~VLDl~ag-~G~kt~~la~~~~~-~g~v~a~D~~-~~~l~~~~~n~~~~g~-~~v~~~~~D~~~ 133 (264)
T TIGR00446 58 ASSMIPPLALEPDPPERVLDMAAA-PGGKTTQISALMKN-EGAIVANEFS-KSRTKVLIANINRCGV-LNVAVTNFDGRV 133 (264)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCC-chHHHHHHHHHcCC-CCEEEEEcCC-HHHHHHHHHHHHHcCC-CcEEEecCCHHH
Confidence 334444455556677899999996 99999999988765 6899999999 999999999998 65 579999999987
Q ss_pred hhhhcCCCccEEEEcCCCCCc-----------------------cHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 105 LLMGDYRGADFVLIDCNIDID-----------------------GHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~~k~~~-----------------------~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+. ...+.||.||+|++-... ...++++.+.+. |+| ||.||.-..
T Consensus 134 ~~-~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~--lkp-gG~lvYstc 200 (264)
T TIGR00446 134 FG-AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDA--LKP-GGVLVYSTC 200 (264)
T ss_pred hh-hhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHh--cCC-CCEEEEEeC
Confidence 53 334579999999864110 124577777787 876 888876533
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.6e-11 Score=106.68 Aligned_cols=111 Identities=12% Similarity=0.043 Sum_probs=86.1
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHh-----c--cc-CCcEEEEEcchhhhh
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSL-----G--RY-ANCIEFVKGDAQKLL 106 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l-----~--g~-~~~Ve~v~gda~~~L 106 (220)
++...+|++||+||+| .|+++..+++. +...+|++||+| +++++.|+++. . .+ ..+++++++|+.+++
T Consensus 145 m~~h~~PkrVLIIGgG-dG~tlrelLk~--~~v~~It~VEID-peVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL 220 (374)
T PRK01581 145 MSKVIDPKRVLILGGG-DGLALREVLKY--ETVLHVDLVDLD-GSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL 220 (374)
T ss_pred HHhCCCCCEEEEECCC-HHHHHHHHHhc--CCCCeEEEEeCC-HHHHHHHHhccccchhccccCCCCceEEEECcHHHHH
Confidence 4456789999999986 89976666652 225899999999 99999999732 1 22 468999999999999
Q ss_pred hhcCCCccEEEEcCCCCC-----ccH-HHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 107 MGDYRGADFVLIDCNIDI-----DGH-KNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~k~~-----~~y-~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+...+.||+||+|..... ..| .++++.+.+. |+| ||++++-..
T Consensus 221 ~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~--LkP-gGV~V~Qs~ 269 (374)
T PRK01581 221 SSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATF--LTE-DGAFVCQSN 269 (374)
T ss_pred HhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHh--cCC-CcEEEEecC
Confidence 776678999999975411 244 6789999999 986 888887643
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.4e-11 Score=103.85 Aligned_cols=107 Identities=14% Similarity=0.197 Sum_probs=84.4
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc--CCcEEEEEcchhhhhhhcC
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY--ANCIEFVKGDAQKLLMGDY 110 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~--~~~Ve~v~gda~~~L~~~~ 110 (220)
...++++||+||+| .|.++..+++. ....+|++||+| ++.++.|++++. +. ..+++++.+|+.++++...
T Consensus 73 ~~~~p~~VL~iG~G-~G~~~~~~l~~--~~~~~V~~VEid-~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~ 148 (283)
T PRK00811 73 AHPNPKRVLIIGGG-DGGTLREVLKH--PSVEKITLVEID-ERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETE 148 (283)
T ss_pred hCCCCCEEEEEecC-chHHHHHHHcC--CCCCEEEEEeCC-HHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCC
Confidence 34578999999986 89998888753 225799999999 999999999985 22 4679999999999987645
Q ss_pred CCccEEEEcCCCCC----ccH-HHHHHHHHhhcCCCCCCEEEEEe
Q 042616 111 RGADFVLIDCNIDI----DGH-KNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 111 ~~~D~VfiD~~k~~----~~y-~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.||+|++|..... ..| .++++.+.+. |+| ||++++.
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~--L~~-gGvlv~~ 190 (283)
T PRK00811 149 NSFDVIIVDSTDPVGPAEGLFTKEFYENCKRA--LKE-DGIFVAQ 190 (283)
T ss_pred CcccEEEECCCCCCCchhhhhHHHHHHHHHHh--cCC-CcEEEEe
Confidence 78999999974311 122 5678889988 876 8988874
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.5e-11 Score=89.61 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=80.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CCCccEEEE
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YRGADFVLI 118 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~~~D~Vfi 118 (220)
.+|||+||| +|..++.+++.. ..+++++|.| |..++.|+.++. ++.++++++++|..+..+.+ .++||+|+.
T Consensus 2 ~~vlD~~~G-~G~~~~~~~~~~---~~~~~gvdi~-~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 2 DRVLDPGCG-SGTFLLAALRRG---AARVTGVDID-PEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp EEEEEETST-TCHHHHHHHHHC---TCEEEEEESS-HHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CEEEEcCcc-hHHHHHHHHHHC---CCeEEEEEEC-HHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEE
Confidence 579999997 999999888764 3799999999 999999999997 66678999999999987443 478999999
Q ss_pred cCCCCC---------ccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 119 DCNIDI---------DGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 119 D~~k~~---------~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|.+-.. ..|...++.+.+. |+| ||++++
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~--L~~-gG~~~~ 113 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARL--LKP-GGVLVF 113 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHH--EEE-EEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHH--cCC-CeEEEE
Confidence 987621 1357789999998 886 777654
|
... |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6e-11 Score=110.79 Aligned_cols=125 Identities=13% Similarity=0.159 Sum_probs=94.1
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
+...+......+...++...+.++|||+||| +|..|++|+..++. +++|+++|.+ +++++.++++++ |+ ++|++
T Consensus 230 G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG-~G~kt~~la~~~~~-~~~V~avD~s-~~~l~~~~~~~~~~g~-~~v~~ 305 (445)
T PRK14904 230 GLVSVQNPTQALACLLLNPQPGSTVLDLCAA-PGGKSTFMAELMQN-RGQITAVDRY-PQKLEKIRSHASALGI-TIIET 305 (445)
T ss_pred cEEEEeCHHHHHHHHhcCCCCCCEEEEECCC-CCHHHHHHHHHhCC-CcEEEEEECC-HHHHHHHHHHHHHhCC-CeEEE
Confidence 3334444444555555566667899999996 99999999988765 6899999999 999999999997 66 57999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCCc-----------------------cHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDID-----------------------GHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~~-----------------------~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+++|+.+..+ ..+||.||+|++-... ....+++.+.+. |+| ||.+|.....
T Consensus 306 ~~~Da~~~~~--~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~--lkp-gG~lvystcs 379 (445)
T PRK14904 306 IEGDARSFSP--EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASL--LKP-GGVLVYATCS 379 (445)
T ss_pred EeCccccccc--CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHh--cCC-CcEEEEEeCC
Confidence 9999988654 3679999999753110 123467778887 876 8888776544
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-10 Score=95.30 Aligned_cols=121 Identities=8% Similarity=-0.026 Sum_probs=91.4
Q ss_pred CChhHHHHHHHHHh----hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 24 KEPDVGEFISALAA----GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 24 ~~p~~~~~L~~La~----~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
..|....+..++.. .....++||++|| +|..++.++... ..+|+.||.+ +..++.+++|++ ++.+++++
T Consensus 29 ~rpt~~~vrea~f~~l~~~~~g~~vLDLfaG-sG~lglea~srg---a~~v~~vE~~-~~a~~~~~~N~~~~~~~~~~~~ 103 (189)
T TIGR00095 29 TRPTTRVVRELFFNILRPEIQGAHLLDVFAG-SGLLGEEALSRG---AKVAFLEEDD-RKANQTLKENLALLKSGEQAEV 103 (189)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCEEEEecCC-CcHHHHHHHhCC---CCEEEEEeCC-HHHHHHHHHHHHHhCCcccEEE
Confidence 44444444444433 3467899999996 999988766531 3489999999 999999999997 66668999
Q ss_pred EEcchhhhhhhcC---CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 98 VKGDAQKLLMGDY---RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 98 v~gda~~~L~~~~---~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++|+.+.++.+. ..||+||+|++-....+.+.++.+.....| +++|+||+.
T Consensus 104 ~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l-~~~~iiv~E 158 (189)
T TIGR00095 104 VRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWIL-EDTVLIVVE 158 (189)
T ss_pred EehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCC-CCCeEEEEE
Confidence 9999988876432 248999999988556678888888776545 569998886
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.9e-10 Score=97.37 Aligned_cols=110 Identities=9% Similarity=0.205 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+..+|||+||| +|..++.|+..+...++++++||++ +.+++.|+++++ +...+++++++|+.+.. ...+|+|
T Consensus 55 ~~~~~vLDlGcG-tG~~~~~l~~~~~~~~~~v~gvD~S-~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---~~~~D~v 129 (247)
T PRK15451 55 QPGTQVYDLGCS-LGAATLSVRRNIHHDNCKIIAIDNS-PAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---IENASMV 129 (247)
T ss_pred CCCCEEEEEccc-CCHHHHHHHHhcCCCCCeEEEEeCC-HHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---CCCCCEE
Confidence 356789999997 9999999988654447999999999 999999999997 55568999999998753 2468998
Q ss_pred EEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 117 LIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 117 fiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
++.... +..+...+++.+.+. |+|.|.+++++.+...
T Consensus 130 v~~~~l~~l~~~~~~~~l~~i~~~--LkpGG~l~l~e~~~~~ 169 (247)
T PRK15451 130 VLNFTLQFLEPSERQALLDKIYQG--LNPGGALVLSEKFSFE 169 (247)
T ss_pred ehhhHHHhCCHHHHHHHHHHHHHh--cCCCCEEEEEEecCCC
Confidence 864321 112346789999999 9874444555545443
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-10 Score=102.23 Aligned_cols=118 Identities=15% Similarity=0.155 Sum_probs=89.8
Q ss_pred CChhHHHHHHHHHhh---C-CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 24 KEPDVGEFISALAAG---N-NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 24 ~~p~~~~~L~~La~~---~-~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
..|++.+++...... . ++.+|||+||| +|..++.|+...+ +.+|+++|.+ +.+++.|++|++ ++.++|++
T Consensus 113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~G-sG~iai~la~~~p--~~~V~avDis-~~al~~A~~n~~~~~l~~~i~~ 188 (307)
T PRK11805 113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTG-SGCIAIACAYAFP--DAEVDAVDIS-PDALAVAEINIERHGLEDRVTL 188 (307)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEech-hhHHHHHHHHHCC--CCEEEEEeCC-HHHHHHHHHHHHHhCCCCcEEE
Confidence 446667776654432 1 23789999997 9999999998654 5899999999 999999999997 66678999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCC--------------------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDI--------------------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~--------------------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++|..+.++. .+||+|+.|.+.-. ..|..+++.+.+. |+| ||.+++.
T Consensus 189 ~~~D~~~~l~~--~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~--L~p-gG~l~~E 262 (307)
T PRK11805 189 IESDLFAALPG--RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDY--LTE-DGVLVVE 262 (307)
T ss_pred EECchhhhCCC--CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHh--cCC-CCEEEEE
Confidence 99999876652 57999999864300 1245667888888 876 8888875
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=103.38 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=84.4
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc-CCcEEEEEcchhhhhhhc-CC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY-ANCIEFVKGDAQKLLMGD-YR 111 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~-~~~Ve~v~gda~~~L~~~-~~ 111 (220)
..++++||+||+| .|.++..+++. +...+|+.||+| ++.++.||+++. ++ ..+++++++|+.+++... .+
T Consensus 89 ~~~pkrVLiIGgG-~G~~~rellk~--~~v~~V~~VEiD-~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~ 164 (308)
T PLN02366 89 IPNPKKVLVVGGG-DGGVLREIARH--SSVEQIDICEID-KMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEG 164 (308)
T ss_pred CCCCCeEEEEcCC-ccHHHHHHHhC--CCCCeEEEEECC-HHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCC
Confidence 4678999999986 89888888764 325799999999 999999999985 23 357999999999998654 46
Q ss_pred CccEEEEcCCCCC----cc-HHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 112 GADFVLIDCNIDI----DG-HKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 112 ~~D~VfiD~~k~~----~~-y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.||+||+|+.... .. ..++++.+.+. |+| ||+++..
T Consensus 165 ~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~--L~p-gGvlv~q 205 (308)
T PLN02366 165 TYDAIIVDSSDPVGPAQELFEKPFFESVARA--LRP-GGVVCTQ 205 (308)
T ss_pred CCCEEEEcCCCCCCchhhhhHHHHHHHHHHh--cCC-CcEEEEC
Confidence 7999999986511 11 35789999998 876 8988764
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-10 Score=106.00 Aligned_cols=149 Identities=13% Similarity=0.223 Sum_probs=106.8
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcc
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGD 101 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gd 101 (220)
+....++++..+....+.++|||+||| +|..|+.|+..+.. .|+|+++|.+ +++++.++++++ |+ ++|+++++|
T Consensus 236 ~qd~~s~l~~~~l~~~~g~~VLDl~ag-~G~kt~~la~~~~~-~g~v~a~D~~-~~rl~~~~~n~~r~g~-~~v~~~~~D 311 (434)
T PRK14901 236 VQDRSAQLVAPLLDPQPGEVILDACAA-PGGKTTHIAELMGD-QGEIWAVDRS-ASRLKKLQENAQRLGL-KSIKILAAD 311 (434)
T ss_pred EECHHHHHHHHHhCCCCcCEEEEeCCC-CchhHHHHHHHhCC-CceEEEEcCC-HHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 344456666666677778999999996 99999999988765 6899999999 999999999997 66 469999999
Q ss_pred hhhhhh---hcCCCccEEEEcCCCCC-------cc----------------HHHHHHHHHhhcCCCCCCEEEEEecCC-C
Q 042616 102 AQKLLM---GDYRGADFVLIDCNIDI-------DG----------------HKNVFRAAKESVMHGSGAGVIVGYNAL-P 154 (220)
Q Consensus 102 a~~~L~---~~~~~~D~VfiD~~k~~-------~~----------------y~~~l~~l~~~~~L~~~Ggviv~dNv~-~ 154 (220)
+.+... ...+.||.||+|++-.. .+ -.++++.+.+. |+| ||.+|.-... .
T Consensus 312 ~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~--lkp-gG~lvystcsi~ 388 (434)
T PRK14901 312 SRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPL--LKP-GGTLVYATCTLH 388 (434)
T ss_pred hhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHh--cCC-CCEEEEEeCCCC
Confidence 987642 12367999999986310 10 24667888887 876 8877765433 3
Q ss_pred CC-------Ccc----ceEEE-----eeec---CCcEEEEEEee
Q 042616 155 KG-------SWR----GYKTH-----FLPI---GEGLLVTRIGE 179 (220)
Q Consensus 155 ~g-------~~~----~~~s~-----~lPi---g~Gl~v~~~~~ 179 (220)
+. .|. +|+-. ++|- +||+.+++...
T Consensus 389 ~~Ene~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k 432 (434)
T PRK14901 389 PAENEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRK 432 (434)
T ss_pred hhhHHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEe
Confidence 32 122 33322 3443 48898887764
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=2e-10 Score=100.06 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=87.0
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCC
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRG 112 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~ 112 (220)
++...+.++|||+||| +|..++.++....+ .++|+++|++ +.+++.|++++. ++ ++++++.+|+.+ ++...+.
T Consensus 72 ~~~~~~g~~VLDiG~G-~G~~~~~~a~~~g~-~~~v~gvD~s-~~~l~~A~~~~~~~g~-~~v~~~~~d~~~-l~~~~~~ 146 (272)
T PRK11873 72 LAELKPGETVLDLGSG-GGFDCFLAARRVGP-TGKVIGVDMT-PEMLAKARANARKAGY-TNVEFRLGEIEA-LPVADNS 146 (272)
T ss_pred hccCCCCCEEEEeCCC-CCHHHHHHHHHhCC-CCEEEEECCC-HHHHHHHHHHHHHcCC-CCEEEEEcchhh-CCCCCCc
Confidence 3455678999999997 79988888876654 6799999999 999999999986 55 589999999876 3322468
Q ss_pred ccEEEEcCCCC-CccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 113 ADFVLIDCNID-IDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 113 ~D~VfiD~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
||+|+.++--. ..+...+++.+.+. |+| ||.+++.++.
T Consensus 147 fD~Vi~~~v~~~~~d~~~~l~~~~r~--Lkp-GG~l~i~~~~ 185 (272)
T PRK11873 147 VDVIISNCVINLSPDKERVFKEAFRV--LKP-GGRFAISDVV 185 (272)
T ss_pred eeEEEEcCcccCCCCHHHHHHHHHHH--cCC-CcEEEEEEee
Confidence 99999886420 13567889999999 886 8887776554
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.19 E-value=7e-10 Score=90.97 Aligned_cols=115 Identities=10% Similarity=-0.025 Sum_probs=85.3
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~ 107 (220)
.+.+|.......++++|||+||| +|+.++.++.. +.+|+++|.+ +++++.|+++++...-+++++.+|..+..
T Consensus 7 d~~~l~~~l~~~~~~~vLdlG~G-~G~~~~~l~~~----~~~v~~vD~s-~~~~~~a~~~~~~~~~~~~~~~~d~~~~~- 79 (179)
T TIGR00537 7 DSLLLEANLRELKPDDVLEIGAG-TGLVAIRLKGK----GKCILTTDIN-PFAVKELRENAKLNNVGLDVVMTDLFKGV- 79 (179)
T ss_pred cHHHHHHHHHhcCCCeEEEeCCC-hhHHHHHHHhc----CCEEEEEECC-HHHHHHHHHHHHHcCCceEEEEccccccc-
Confidence 34666666677788999999997 99999988864 3489999999 99999999999722236899999987754
Q ss_pred hcCCCccEEEEcCCCCC----------------------ccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 108 GDYRGADFVLIDCNIDI----------------------DGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k~~----------------------~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.++||+|+.+.+... ..+.++++.+.+. |+|.|-+++++...
T Consensus 80 --~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 80 --RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEI--LKEGGRVQLIQSSL 143 (179)
T ss_pred --CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHh--hCCCCEEEEEEecc
Confidence 358999998864300 0145678888888 88744455555443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-10 Score=98.52 Aligned_cols=118 Identities=12% Similarity=0.117 Sum_probs=96.5
Q ss_pred hHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhh
Q 042616 27 DVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQK 104 (220)
Q Consensus 27 ~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~ 104 (220)
.-+-||...+.....++|||+||| +|..++.||.- .+..++++||.+ +++++.|++|++ +++++|+++++|..+
T Consensus 31 ~DaiLL~~~~~~~~~~~IlDlGaG-~G~l~L~la~r--~~~a~I~~VEiq-~~~a~~A~~nv~ln~l~~ri~v~~~Di~~ 106 (248)
T COG4123 31 TDAILLAAFAPVPKKGRILDLGAG-NGALGLLLAQR--TEKAKIVGVEIQ-EEAAEMAQRNVALNPLEERIQVIEADIKE 106 (248)
T ss_pred cHHHHHHhhcccccCCeEEEecCC-cCHHHHHHhcc--CCCCcEEEEEeC-HHHHHHHHHHHHhCcchhceeEehhhHHH
Confidence 457899999999999999999997 89888877753 224899999999 999999999998 788999999999999
Q ss_pred hhhhcC-CCccEEEEcCCC-----C--------------CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 105 LLMGDY-RGADFVLIDCNI-----D--------------IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 105 ~L~~~~-~~~D~VfiD~~k-----~--------------~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.+... .+||+|+..++- . ..+..++++.+... |+++|.+.+++
T Consensus 107 ~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~--lk~~G~l~~V~ 170 (248)
T COG4123 107 FLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKL--LKPGGRLAFVH 170 (248)
T ss_pred hhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHH--ccCCCEEEEEe
Confidence 887654 469999987654 0 02467888888988 98855555554
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.1e-10 Score=100.09 Aligned_cols=116 Identities=13% Similarity=0.049 Sum_probs=85.6
Q ss_pred CChhHHHHHHHH----HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 24 KEPDVGEFISAL----AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 24 ~~p~~~~~L~~L----a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
..+.+++-|... +...++.+|||+||| +|..++.||.. +.+|++||.+ +.+++.|+++++ ++ ++++|
T Consensus 153 ~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG-~G~~sl~la~~----~~~V~gvD~s-~~av~~A~~n~~~~~l-~~v~~ 225 (315)
T PRK03522 153 TNPAVAAQLYATARDWVRELPPRSMWDLFCG-VGGFGLHCATP----GMQLTGIEIS-AEAIACAKQSAAELGL-TNVQF 225 (315)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEccCC-CCHHHHHHHhc----CCEEEEEeCC-HHHHHHHHHHHHHcCC-CceEE
Confidence 444555444432 233357899999997 99999999872 6799999999 999999999997 66 68999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++|+.++++...+.||+|++|.++ .+....+.+.+.+. .|++-+.+.-
T Consensus 226 ~~~D~~~~~~~~~~~~D~Vv~dPPr-~G~~~~~~~~l~~~---~~~~ivyvsc 274 (315)
T PRK03522 226 QALDSTQFATAQGEVPDLVLVNPPR-RGIGKELCDYLSQM---APRFILYSSC 274 (315)
T ss_pred EEcCHHHHHHhcCCCCeEEEECCCC-CCccHHHHHHHHHc---CCCeEEEEEC
Confidence 9999998775434579999999997 23346666777665 4534334333
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.5e-10 Score=97.01 Aligned_cols=116 Identities=9% Similarity=-0.005 Sum_probs=85.2
Q ss_pred ChhHHHHHHHH--HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch
Q 042616 25 EPDVGEFISAL--AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA 102 (220)
Q Consensus 25 ~p~~~~~L~~L--a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda 102 (220)
....+.+|..+ +...+..+|||+||| +|+.++.|+...+ .|+|+++|.+ +++++.++++++.. .+|+++.+|+
T Consensus 55 ~~~~~~ll~~~~~l~i~~g~~VlD~G~G-~G~~~~~la~~v~--~g~V~avD~~-~~ml~~l~~~a~~~-~nv~~i~~D~ 129 (226)
T PRK04266 55 SKLAAAILKGLKNFPIKKGSKVLYLGAA-SGTTVSHVSDIVE--EGVVYAVEFA-PRPMRELLEVAEER-KNIIPILADA 129 (226)
T ss_pred cchHHHHHhhHhhCCCCCCCEEEEEccC-CCHHHHHHHHhcC--CCeEEEEECC-HHHHHHHHHHhhhc-CCcEEEECCC
Confidence 33445555545 566678899999997 9999999998764 5899999999 99998777776543 5799999998
Q ss_pred hhhh--hhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 103 QKLL--MGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 103 ~~~L--~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.+.. ..+.++||+||.|... .......++.+.+. |+| ||.+++
T Consensus 130 ~~~~~~~~l~~~~D~i~~d~~~-p~~~~~~L~~~~r~--LKp-GG~lvI 174 (226)
T PRK04266 130 RKPERYAHVVEKVDVIYQDVAQ-PNQAEIAIDNAEFF--LKD-GGYLLL 174 (226)
T ss_pred CCcchhhhccccCCEEEECCCC-hhHHHHHHHHHHHh--cCC-CcEEEE
Confidence 6521 1223579999998764 12334457888888 887 666655
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-09 Score=94.96 Aligned_cols=114 Identities=11% Similarity=0.111 Sum_probs=85.9
Q ss_pred HHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----ccCCcEEEEEcchhhhhhhc
Q 042616 34 ALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RYANCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 34 ~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~~~~Ve~v~gda~~~L~~~ 109 (220)
.++...+..+|||+||| +|..+..|+...++ .++|++||++ +++++.|++... ...++++++++|+.++ |..
T Consensus 67 ~~~~~~~~~~VLDlGcG-tG~~~~~la~~~~~-~~~V~gvD~S-~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~ 142 (261)
T PLN02233 67 SWSGAKMGDRVLDLCCG-SGDLAFLLSEKVGS-DGKVMGLDFS-SEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFD 142 (261)
T ss_pred HHhCCCCCCEEEEECCc-CCHHHHHHHHHhCC-CCEEEEEECC-HHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCC
Confidence 34455677899999997 99999999876544 5899999999 999999987653 2235799999999873 433
Q ss_pred CCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 110 YRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 110 ~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.++||+|++...- .-.+....++.+.+. |+| ||.+++-+...
T Consensus 143 ~~sfD~V~~~~~l~~~~d~~~~l~ei~rv--Lkp-GG~l~i~d~~~ 185 (261)
T PLN02233 143 DCYFDAITMGYGLRNVVDRLKAMQEMYRV--LKP-GSRVSILDFNK 185 (261)
T ss_pred CCCEeEEEEecccccCCCHHHHHHHHHHH--cCc-CcEEEEEECCC
Confidence 4689999876433 114667889999999 887 77765554443
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.5e-10 Score=100.98 Aligned_cols=102 Identities=13% Similarity=0.039 Sum_probs=81.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.++++||||||| +|.++..|+... +.+|++||.+ +.+++.|+++.+ ++.++|+++++|+.+. |...+.||+|
T Consensus 117 ~~~~~VLDiGCG-~G~~~~~La~~~---g~~v~gvD~s-~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCG-IGGSSRYLARKY---GANVKGITLS-PVQAARANALAAAQGLSDKVSFQVADALNQ-PFEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCC-CCHHHHHHHHhc---CCEEEEEECC-HHHHHHHHHHHHhcCCCCceEEEEcCcccC-CCCCCCccEE
Confidence 457899999997 999999998753 5799999999 999999999886 6667899999999873 3335789999
Q ss_pred EEcCC-CCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 117 LIDCN-IDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fiD~~-k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+.-.. ....+...+++.+.+. |+| ||.+++
T Consensus 191 ~s~~~~~h~~d~~~~l~e~~rv--Lkp-GG~lvi 221 (340)
T PLN02244 191 WSMESGEHMPDKRKFVQELARV--AAP-GGRIII 221 (340)
T ss_pred EECCchhccCCHHHHHHHHHHH--cCC-CcEEEE
Confidence 97432 2224667889999998 887 666554
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.6e-10 Score=96.05 Aligned_cols=105 Identities=12% Similarity=0.138 Sum_probs=81.1
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~ 109 (220)
.+|..+ ...++.+||||||| +|..+..|+...+ +++|+++|++ +.+++.|++. +++++++|+.+..+
T Consensus 20 ~ll~~l-~~~~~~~vLDlGcG-~G~~~~~l~~~~p--~~~v~gvD~s-~~~~~~a~~~------~~~~~~~d~~~~~~-- 86 (255)
T PRK14103 20 DLLARV-GAERARRVVDLGCG-PGNLTRYLARRWP--GAVIEALDSS-PEMVAAARER------GVDARTGDVRDWKP-- 86 (255)
T ss_pred HHHHhC-CCCCCCEEEEEcCC-CCHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHhc------CCcEEEcChhhCCC--
Confidence 344333 45667999999997 9999999998653 6899999999 9999998763 58899999987643
Q ss_pred CCCccEEEEcCCCC-CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 110 YRGADFVLIDCNID-IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 110 ~~~~D~VfiD~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.++||+|+....-. -.+....++.+.+. |+| ||.+++-
T Consensus 87 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~--Lkp-gG~l~~~ 125 (255)
T PRK14103 87 KPDTDVVVSNAALQWVPEHADLLVRWVDE--LAP-GSWIAVQ 125 (255)
T ss_pred CCCceEEEEehhhhhCCCHHHHHHHHHHh--CCC-CcEEEEE
Confidence 46899999876431 13567889999998 887 7877663
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.7e-10 Score=97.17 Aligned_cols=118 Identities=14% Similarity=0.187 Sum_probs=88.2
Q ss_pred CChhHHHHHHHHHhh---CCC-CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 24 KEPDVGEFISALAAG---NNA-QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 24 ~~p~~~~~L~~La~~---~~a-~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
-.|+...++...... .++ .+|||+||| +|..++.|+...+ +.+|+++|.+ +++++.|++|++ ++.+++++
T Consensus 94 Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~G-sG~i~l~la~~~~--~~~v~avDis-~~al~~a~~n~~~~~~~~~v~~ 169 (284)
T TIGR00536 94 PRPETEELVEKALASLISQNPILHILDLGTG-SGCIALALAYEFP--NAEVIAVDIS-PDALAVAEENAEKNQLEHRVEF 169 (284)
T ss_pred CCCccHHHHHHHHHHhhhcCCCCEEEEEecc-HhHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHHHHHHcCCCCcEEE
Confidence 345566666554432 233 689999997 9999999998764 4799999999 999999999997 66567999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCC--------------------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDI--------------------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~--------------------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++|..+.++. .+||+|+.+.+--. ..|..+++.+.+. |+| ||++++.
T Consensus 170 ~~~d~~~~~~~--~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~--L~~-gG~l~~e 243 (284)
T TIGR00536 170 IQSNLFEPLAG--QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDY--LKP-NGFLVCE 243 (284)
T ss_pred EECchhccCcC--CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHh--ccC-CCEEEEE
Confidence 99999875532 37999998753300 1356677777777 876 8888775
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-10 Score=95.09 Aligned_cols=116 Identities=18% Similarity=0.167 Sum_probs=85.3
Q ss_pred HHHHHHHHhh-CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh
Q 042616 29 GEFISALAAG-NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL 105 (220)
Q Consensus 29 ~~~L~~La~~-~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~ 105 (220)
..+...|... ....++||+-+| +|..++- |+.....+|+.||.+ ++.++..++|++ +..++++++.+|+...
T Consensus 30 ealFniL~~~~~~g~~vLDLFaG-SGalGlE---ALSRGA~~v~fVE~~-~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~ 104 (183)
T PF03602_consen 30 EALFNILQPRNLEGARVLDLFAG-SGALGLE---ALSRGAKSVVFVEKN-RKAIKIIKKNLEKLGLEDKIRVIKGDAFKF 104 (183)
T ss_dssp HHHHHHHHCH-HTT-EEEETT-T-TSHHHHH---HHHTT-SEEEEEES--HHHHHHHHHHHHHHT-GGGEEEEESSHHHH
T ss_pred HHHHHHhcccccCCCeEEEcCCc-cCccHHH---HHhcCCCeEEEEECC-HHHHHHHHHHHHHhCCCcceeeeccCHHHH
Confidence 4555555555 678999999886 8988873 344434699999999 999999999998 6667899999999988
Q ss_pred hhhc---CCCccEEEEcCCCCCcc-HHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 106 LMGD---YRGADFVLIDCNIDIDG-HKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 106 L~~~---~~~~D~VfiD~~k~~~~-y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++. ..+||+||+|++-.... |.+.++.+...++|. ++|+||+.
T Consensus 105 l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~-~~~~ii~E 152 (183)
T PF03602_consen 105 LLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLN-EDGLIIIE 152 (183)
T ss_dssp HHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEE-EEEEEEEE
T ss_pred HHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCC-CCEEEEEE
Confidence 8665 47899999999875555 488899998655465 58988886
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-09 Score=92.95 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=86.4
Q ss_pred hHHHHHHHHHhh--CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcch
Q 042616 27 DVGEFISALAAG--NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDA 102 (220)
Q Consensus 27 ~~~~~L~~La~~--~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda 102 (220)
...+++..++.. .+..+|||+||| +|..+..|+......+++++++|++ +++++.|+++++ +...+++++++|+
T Consensus 38 ~~~~~~~~l~~~~~~~~~~iLDlGcG-~G~~~~~l~~~~~~p~~~v~gvD~s-~~ml~~a~~~~~~~~~~~~v~~~~~d~ 115 (239)
T TIGR00740 38 NIITAIGMLAERFVTPDSNVYDLGCS-RGAATLSARRNINQPNVKIIGIDNS-QPMVERCRQHIAAYHSEIPVEILCNDI 115 (239)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCC-CCHHHHHHHHhcCCCCCeEEEEeCC-HHHHHHHHHHHHhcCCCCCeEEEECCh
Confidence 344445445432 356789999997 9999999998765447999999999 999999999987 4446799999999
Q ss_pred hhhhhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 103 QKLLMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.+.- ...+|+|+....- ...+...+++.+.+. |+| ||.+++.+.
T Consensus 116 ~~~~---~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~--Lkp-gG~l~i~d~ 162 (239)
T TIGR00740 116 RHVE---IKNASMVILNFTLQFLPPEDRIALLTKIYEG--LNP-NGVLVLSEK 162 (239)
T ss_pred hhCC---CCCCCEEeeecchhhCCHHHHHHHHHHHHHh--cCC-CeEEEEeec
Confidence 8753 2468988765432 012346789999998 887 666655443
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-10 Score=103.94 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=90.5
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA 102 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda 102 (220)
.+....+.++..++...+..+|||+||| +|..|+.++...+ +++|+++|.+ +.+++.++++++.+.-.++++++|+
T Consensus 227 ~iQd~~s~~~~~~l~~~~g~~VLDlgaG-~G~~t~~la~~~~--~~~v~a~D~s-~~~l~~~~~n~~~~g~~~~~~~~D~ 302 (427)
T PRK10901 227 SVQDAAAQLAATLLAPQNGERVLDACAA-PGGKTAHILELAP--QAQVVALDID-AQRLERVRENLQRLGLKATVIVGDA 302 (427)
T ss_pred EEECHHHHHHHHHcCCCCCCEEEEeCCC-CChHHHHHHHHcC--CCEEEEEeCC-HHHHHHHHHHHHHcCCCeEEEEcCc
Confidence 3455556667667777788999999996 9999999998764 4899999999 9999999999972222478999999
Q ss_pred hhhhhhc-CCCccEEEEcCCCCC-----------------------ccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 103 QKLLMGD-YRGADFVLIDCNIDI-----------------------DGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 103 ~~~L~~~-~~~~D~VfiD~~k~~-----------------------~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
.+..+.. .++||+||+|++-.. ..+.++++.+.+. |+| ||.+|.-.
T Consensus 303 ~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~--Lkp-GG~lvyst 372 (427)
T PRK10901 303 RDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPL--LKP-GGTLLYAT 372 (427)
T ss_pred ccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHh--cCC-CCEEEEEe
Confidence 8743211 357999999997410 0123577888887 876 77766443
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.3e-10 Score=102.18 Aligned_cols=97 Identities=20% Similarity=0.211 Sum_probs=79.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc---CCCc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD---YRGA 113 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~---~~~~ 113 (220)
.+.++|||+||| +|..++.||.. ..+|++||.+ +++++.|++|++ ++ ++++++.+|+.+.++.+ ...|
T Consensus 291 ~~~~~vLDl~cG-~G~~sl~la~~----~~~V~~vE~~-~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~~~~~ 363 (431)
T TIGR00479 291 QGEELVVDAYCG-VGTFTLPLAKQ----AKSVVGIEVV-PESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPWAGQIP 363 (431)
T ss_pred CCCCEEEEcCCC-cCHHHHHHHHh----CCEEEEEEcC-HHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhcCCCC
Confidence 456899999997 99999999975 4689999999 999999999997 55 68999999999887653 2469
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEE
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVI 147 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggvi 147 (220)
|+|++|+++ .+...+.++.+.. +.| ++++
T Consensus 364 D~vi~dPPr-~G~~~~~l~~l~~---l~~-~~iv 392 (431)
T TIGR00479 364 DVLLLDPPR-KGCAAEVLRTIIE---LKP-ERIV 392 (431)
T ss_pred CEEEECcCC-CCCCHHHHHHHHh---cCC-CEEE
Confidence 999999997 2446888888776 445 5554
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=99.68 Aligned_cols=118 Identities=13% Similarity=0.055 Sum_probs=89.0
Q ss_pred CCChhHHHHHHHHHhh----CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEE
Q 042616 23 GKEPDVGEFISALAAG----NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIE 96 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~----~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve 96 (220)
...+.+.+-|...+.. .+..+|||+||| +|..++.+|. . +.+|++||.+ +.+++.|++|++ ++ ++++
T Consensus 212 Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG-~G~~~l~la~---~-~~~v~~vE~~-~~av~~a~~N~~~~~~-~~~~ 284 (374)
T TIGR02085 212 QTNPKVAAQLYATARQWVREIPVTQMWDLFCG-VGGFGLHCAG---P-DTQLTGIEIE-SEAIACAQQSAQMLGL-DNLS 284 (374)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCEEEEccCC-ccHHHHHHhh---c-CCeEEEEECC-HHHHHHHHHHHHHcCC-CcEE
Confidence 3455565555443322 356899999997 9999998884 2 5799999999 999999999997 55 5899
Q ss_pred EEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 97 FVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 97 ~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
++++|+.++++....+||+||+|+++ .+.....++.+... .|++-++|..|
T Consensus 285 ~~~~d~~~~~~~~~~~~D~vi~DPPr-~G~~~~~l~~l~~~---~p~~ivyvsc~ 335 (374)
T TIGR02085 285 FAALDSAKFATAQMSAPELVLVNPPR-RGIGKELCDYLSQM---APKFILYSSCN 335 (374)
T ss_pred EEECCHHHHHHhcCCCCCEEEECCCC-CCCcHHHHHHHHhc---CCCeEEEEEeC
Confidence 99999998875433569999999997 34567777888764 56555555555
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.9e-10 Score=104.10 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=91.0
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcc
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGD 101 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gd 101 (220)
+....++++..+....+..+|||+||| +|..|+.++..++ .|+|+++|.+ +++++.++++++ |+..+++++.+|
T Consensus 222 ~Qd~~s~~~~~~L~~~~g~~VLDlcag-~G~kt~~la~~~~--~~~v~a~D~~-~~~l~~~~~n~~r~g~~~~v~~~~~d 297 (426)
T TIGR00563 222 VQDASAQWVATWLAPQNEETILDACAA-PGGKTTHILELAP--QAQVVALDIH-EHRLKRVYENLKRLGLTIKAETKDGD 297 (426)
T ss_pred EECHHHHHHHHHhCCCCCCeEEEeCCC-ccHHHHHHHHHcC--CCeEEEEeCC-HHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 344556777777777788999999996 9999999998775 6899999999 999999999997 664345557787
Q ss_pred hhhhhhh-cCCCccEEEEcCCCCC-------cc----------------HHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 102 AQKLLMG-DYRGADFVLIDCNIDI-------DG----------------HKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 102 a~~~L~~-~~~~~D~VfiD~~k~~-------~~----------------y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+.+.... ...+||.||+|++-.. .+ ..+.++.+.+. |+| ||.+|.-...
T Consensus 298 ~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~--Lkp-gG~lvystcs 370 (426)
T TIGR00563 298 GRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPL--LKT-GGTLVYATCS 370 (426)
T ss_pred cccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHh--cCC-CcEEEEEeCC
Confidence 7543211 1367999999975311 00 24677888887 876 7877765444
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-09 Score=99.39 Aligned_cols=106 Identities=17% Similarity=0.162 Sum_probs=82.8
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc-CCcEEEEEcchhhhhhhcCCC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY-ANCIEFVKGDAQKLLMGDYRG 112 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~-~~~Ve~v~gda~~~L~~~~~~ 112 (220)
..+|++||.||+| .|.++..+++.. ...+|+.||+| ++.++.||+++. ++ ..+++++.+|+.++|....+.
T Consensus 101 ~~~pk~VLiiGgG-~G~~~re~l~~~--~~~~v~~VEiD-~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~ 176 (336)
T PLN02823 101 HPNPKTVFIMGGG-EGSTAREVLRHK--TVEKVVMCDID-QEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEK 176 (336)
T ss_pred CCCCCEEEEECCC-chHHHHHHHhCC--CCCeEEEEECC-HHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCC
Confidence 3468999999975 898887777532 25789999999 999999999985 22 467999999999999765678
Q ss_pred ccEEEEcCCCCC------ccH-HHHHH-HHHhhcCCCCCCEEEEEe
Q 042616 113 ADFVLIDCNIDI------DGH-KNVFR-AAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 113 ~D~VfiD~~k~~------~~y-~~~l~-~l~~~~~L~~~Ggviv~d 150 (220)
||+||+|..... ..| .++++ .+.+. |+| ||++++.
T Consensus 177 yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~--L~p-~Gvlv~q 219 (336)
T PLN02823 177 FDVIIGDLADPVEGGPCYQLYTKSFYERIVKPK--LNP-GGIFVTQ 219 (336)
T ss_pred ccEEEecCCCccccCcchhhccHHHHHHHHHHh--cCC-CcEEEEe
Confidence 999999964310 123 56777 78888 876 8988874
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=95.97 Aligned_cols=106 Identities=15% Similarity=0.167 Sum_probs=83.4
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---c-c-CCcEEEEEcchhhhhhhcCCC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---R-Y-ANCIEFVKGDAQKLLMGDYRG 112 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---g-~-~~~Ve~v~gda~~~L~~~~~~ 112 (220)
..+|++||+||+| .|.++..++... ...+++++|.| ++.++.|++++. + + ..+++++.+|+.+++....++
T Consensus 70 ~~~p~~VL~iG~G-~G~~~~~ll~~~--~~~~v~~veid-~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~ 145 (270)
T TIGR00417 70 HPNPKHVLVIGGG-DGGVLREVLKHK--SVEKATLVDID-EKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENT 145 (270)
T ss_pred CCCCCEEEEEcCC-chHHHHHHHhCC--CcceEEEEeCC-HHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCC
Confidence 4568899999986 898887776542 25789999999 999999999885 1 2 256999999999998765678
Q ss_pred ccEEEEcCCCCC----cc-HHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 113 ADFVLIDCNIDI----DG-HKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 113 ~D~VfiD~~k~~----~~-y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
||+|++|..... .. ..++++.+.+. |+| ||++++.
T Consensus 146 yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~--L~p-gG~lv~~ 185 (270)
T TIGR00417 146 FDVIIVDSTDPVGPAETLFTKEFYELLKKA--LNE-DGIFVAQ 185 (270)
T ss_pred ccEEEEeCCCCCCcccchhHHHHHHHHHHH--hCC-CcEEEEc
Confidence 999999986311 11 36778899998 876 8888875
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-09 Score=90.90 Aligned_cols=102 Identities=14% Similarity=0.049 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
++..+||||||| +|.+++.||...+ ++.+++||++ +.+++.|++++. ++ .+++++++|+.++++.. .+.+|
T Consensus 15 ~~~~~ilDiGcG-~G~~~~~la~~~p--~~~v~gvD~~-~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~~~~~~d 89 (194)
T TIGR00091 15 NKAPLHLEIGCG-KGRFLIDMAKQNP--DKNFLGIEIH-TPIVLAANNKANKLGL-KNLHVLCGDANELLDKFFPDGSLS 89 (194)
T ss_pred CCCceEEEeCCC-ccHHHHHHHHhCC--CCCEEEEEee-HHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhCCCCcee
Confidence 456789999997 8999999998654 5899999999 999999999886 66 58999999999876443 24799
Q ss_pred EEEEcCCCC---------CccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 115 FVLIDCNID---------IDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 115 ~VfiD~~k~---------~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
.|+++.+-. .-.+..+++.+.+. |+| ||.+.
T Consensus 90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~--Lkp-gG~l~ 129 (194)
T TIGR00091 90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANV--LKK-GGVIH 129 (194)
T ss_pred EEEEECCCcCCCCCccccccCCHHHHHHHHHH--hCC-CCEEE
Confidence 999975320 01236789999998 887 66654
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.6e-10 Score=103.25 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=91.3
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhc--cc-CCcEEEEEcchhhhhhhcC
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLG--RY-ANCIEFVKGDAQKLLMGDY 110 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~--g~-~~~Ve~v~gda~~~L~~~~ 110 (220)
+....+.++||++-| +||.+|++.|.+ |+ +||+||.+ ...++.|++|++ |+ .+++.++++|+.++|....
T Consensus 212 l~~~~~GkrvLNlFs-YTGgfSv~Aa~g----GA~~vt~VD~S-~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~ 285 (393)
T COG1092 212 LGELAAGKRVLNLFS-YTGGFSVHAALG----GASEVTSVDLS-KRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAE 285 (393)
T ss_pred HhhhccCCeEEEecc-cCcHHHHHHHhc----CCCceEEEecc-HHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHH
Confidence 444445899999997 599999988775 44 99999999 999999999998 66 3669999999999997763
Q ss_pred ---CCccEEEEcCCCC----------CccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 111 ---RGADFVLIDCNID----------IDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 111 ---~~~D~VfiD~~k~----------~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
..||+||+|++.= ..+|.+.+..+.+. |+| ||++++-+...+
T Consensus 286 ~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~i--L~p-gG~l~~~s~~~~ 340 (393)
T COG1092 286 RRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRL--LAP-GGTLVTSSCSRH 340 (393)
T ss_pred hcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHH--cCC-CCEEEEEecCCc
Confidence 4899999999870 15788889999998 876 777777666543
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-09 Score=90.87 Aligned_cols=116 Identities=15% Similarity=0.119 Sum_probs=86.3
Q ss_pred ChhHHHHHHHHHhhC--CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 25 EPDVGEFISALAAGN--NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 25 ~p~~~~~L~~La~~~--~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
.|+...++..+.... ++.+|||+||| +|..++.++...+ +.+++++|.+ +.+++.|++++. ++ ++++++++
T Consensus 70 ~~~~~~l~~~~l~~~~~~~~~ilDig~G-~G~~~~~l~~~~~--~~~v~~iD~~-~~~~~~a~~~~~~~~~-~~~~~~~~ 144 (251)
T TIGR03534 70 RPDTEELVEAALERLKKGPLRVLDLGTG-SGAIALALAKERP--DARVTAVDIS-PEALAVARKNAARLGL-DNVTFLQS 144 (251)
T ss_pred CCChHHHHHHHHHhcccCCCeEEEEeCc-HhHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHHHHHHcCC-CeEEEEEC
Confidence 345555655555433 35689999997 9999999998754 4799999999 999999999997 55 47999999
Q ss_pred chhhhhhhcCCCccEEEEcCCCCC---------------------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDI---------------------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~---------------------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+.+.++ .++||+|+.+.+-.. ..|..+++.+.+. |+| ||.+++.
T Consensus 145 d~~~~~~--~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~--L~~-gG~~~~~ 216 (251)
T TIGR03534 145 DWFEPLP--GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRL--LKP-GGWLLLE 216 (251)
T ss_pred chhccCc--CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHh--ccc-CCEEEEE
Confidence 9987553 368999998765300 0134567778887 876 7777765
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-09 Score=97.24 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=91.6
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
..+.|..+..+..++...+.+.|||+||| +|..++.++. .+.+++++|.| +.+++.|++|++ ++.+ +++++
T Consensus 164 ~~l~~~la~~~~~l~~~~~g~~vLDp~cG-tG~~lieaa~----~~~~v~g~Di~-~~~~~~a~~nl~~~g~~~-i~~~~ 236 (329)
T TIGR01177 164 GSMDPKLARAMVNLARVTEGDRVLDPFCG-TGGFLIEAGL----MGAKVIGCDID-WKMVAGARINLEHYGIED-FFVKR 236 (329)
T ss_pred CCCCHHHHHHHHHHhCCCCcCEEEECCCC-CCHHHHHHHH----hCCeEEEEcCC-HHHHHHHHHHHHHhCCCC-CeEEe
Confidence 35677888888888877788899999997 8988765443 27899999999 999999999997 6644 99999
Q ss_pred cchhhhhhhcCCCccEEEEcCCCCC----------ccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 100 GDAQKLLMGDYRGADFVLIDCNIDI----------DGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 100 gda~~~L~~~~~~~D~VfiD~~k~~----------~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|+.++ |...+.||+|+.|++-.. ..|.+.++.+.+. |+| ||.+++
T Consensus 237 ~D~~~l-~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~--Lk~-gG~lv~ 292 (329)
T TIGR01177 237 GDATKL-PLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEV--LKS-EGWIVY 292 (329)
T ss_pred cchhcC-CcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHH--ccC-CcEEEE
Confidence 999873 432468999999965300 1268889999998 876 776655
|
This family is found exclusively in the Archaea. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-09 Score=92.76 Aligned_cols=111 Identities=11% Similarity=0.081 Sum_probs=82.8
Q ss_pred ChhHHHHHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcc
Q 042616 25 EPDVGEFISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGD 101 (220)
Q Consensus 25 ~p~~~~~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gd 101 (220)
.+.....+..|.. ..+.++|||+||| +|+.++.++.. . ..+|+++|+| +.+++.|++|++ ++.+++++..++
T Consensus 103 h~tt~~~l~~l~~~~~~~~~VLDiGcG-sG~l~i~~~~~-g--~~~v~giDis-~~~l~~A~~n~~~~~~~~~~~~~~~~ 177 (250)
T PRK00517 103 HPTTRLCLEALEKLVLPGKTVLDVGCG-SGILAIAAAKL-G--AKKVLAVDID-PQAVEAARENAELNGVELNVYLPQGD 177 (250)
T ss_pred CHHHHHHHHHHHhhcCCCCEEEEeCCc-HHHHHHHHHHc-C--CCeEEEEECC-HHHHHHHHHHHHHcCCCceEEEccCC
Confidence 3444555555554 3467899999997 89998876652 2 3479999999 999999999997 554556665543
Q ss_pred hhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
. +||+|+.+... ..+..+++.+.+. |+| ||.++...+..
T Consensus 178 ~---------~fD~Vvani~~--~~~~~l~~~~~~~--Lkp-gG~lilsgi~~ 216 (250)
T PRK00517 178 L---------KADVIVANILA--NPLLELAPDLARL--LKP-GGRLILSGILE 216 (250)
T ss_pred C---------CcCEEEEcCcH--HHHHHHHHHHHHh--cCC-CcEEEEEECcH
Confidence 2 79999988766 6677888999998 876 88888765553
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.7e-09 Score=86.09 Aligned_cols=113 Identities=11% Similarity=0.096 Sum_probs=83.8
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCc-EEEEEcchhh
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANC-IEFVKGDAQK 104 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~-Ve~v~gda~~ 104 (220)
...+|.......+.++|||+||| +|+.++.|+.. +.+++++|.+ +++++.+++++. ++.++ ++++++|..+
T Consensus 11 ~~~~l~~~~~~~~~~~vLd~G~G-~G~~~~~l~~~----~~~v~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~ 84 (188)
T PRK14968 11 DSFLLAENAVDKKGDRVLEVGTG-SGIVAIVAAKN----GKKVVGVDIN-PYAVECAKCNAKLNNIRNNGVEVIRSDLFE 84 (188)
T ss_pred hHHHHHHhhhccCCCEEEEEccc-cCHHHHHHHhh----cceEEEEECC-HHHHHHHHHHHHHcCCCCcceEEEeccccc
Confidence 34556666666788899999996 99999988874 6899999999 999999999987 55333 8999999877
Q ss_pred hhhhcCCCccEEEEcCCCCC----------------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 105 LLMGDYRGADFVLIDCNIDI----------------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~~k~~----------------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.++. ..||+|+.+.+-.. ..+..+++.+.+. |+|.|.+++..
T Consensus 85 ~~~~--~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--Lk~gG~~~~~~ 148 (188)
T PRK14968 85 PFRG--DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRY--LKPGGRILLLQ 148 (188)
T ss_pred cccc--cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHh--cCCCeEEEEEE
Confidence 5533 47999998754300 1135578888888 88744444444
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-09 Score=94.14 Aligned_cols=117 Identities=10% Similarity=0.058 Sum_probs=87.8
Q ss_pred CChhHHHHHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 24 KEPDVGEFISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 24 ~~p~~~~~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
..|.+.-.+..|.. ..+.++|||+||| +|+.++.++.. . .++|+++|.+ +.+++.|++|+. ++.+++++..+
T Consensus 142 ~h~tt~l~l~~l~~~~~~g~~VLDvGcG-sG~lai~aa~~-g--~~~V~avDid-~~al~~a~~n~~~n~~~~~~~~~~~ 216 (288)
T TIGR00406 142 THPTTSLCLEWLEDLDLKDKNVIDVGCG-SGILSIAALKL-G--AAKVVGIDID-PLAVESARKNAELNQVSDRLQVKLI 216 (288)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeCCC-hhHHHHHHHHc-C--CCeEEEEECC-HHHHHHHHHHHHHcCCCcceEEEec
Confidence 33444444444443 2356899999997 89999887753 2 4699999999 999999999997 66667888887
Q ss_pred chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+.... ..++||+|+.+... ..+.+++..+.+. |+| ||.++.-.++
T Consensus 217 ~~~~~---~~~~fDlVvan~~~--~~l~~ll~~~~~~--Lkp-gG~li~sgi~ 261 (288)
T TIGR00406 217 YLEQP---IEGKADVIVANILA--EVIKELYPQFSRL--VKP-GGWLILSGIL 261 (288)
T ss_pred ccccc---cCCCceEEEEecCH--HHHHHHHHHHHHH--cCC-CcEEEEEeCc
Confidence 73332 24689999998776 6677888999888 876 8888876655
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-09 Score=99.96 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc---CCCc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD---YRGA 113 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~---~~~~ 113 (220)
.+..+|||+||| +|..|+.||.. ..+|+++|.+ +++++.|++|++ ++ ++++++++|+.+.++.. .+.|
T Consensus 296 ~~~~~VLDlgcG-tG~~sl~la~~----~~~V~gvD~s-~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 296 QPGDRVLDLFCG-LGNFTLPLARQ----AAEVVGVEGV-EAMVERARENARRNGL-DNVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred CCCCEEEEEecc-CCHHHHHHHHh----CCEEEEEeCC-HHHHHHHHHHHHHcCC-CceEEEEeChHHhhhhhhhhcCCC
Confidence 456899999997 99999999875 4799999999 999999999997 55 57999999998876432 3579
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+|++|.+. ....+.++.+.+. .|++-+.|.-|.
T Consensus 369 D~Vi~dPPr--~g~~~~~~~l~~~---~~~~ivyvSCnp 402 (443)
T PRK13168 369 DKVLLDPPR--AGAAEVMQALAKL---GPKRIVYVSCNP 402 (443)
T ss_pred CEEEECcCC--cChHHHHHHHHhc---CCCeEEEEEeCh
Confidence 999999998 6566778777764 464555555444
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-09 Score=88.98 Aligned_cols=139 Identities=14% Similarity=0.066 Sum_probs=99.1
Q ss_pred HHHHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh
Q 042616 29 GEFISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL 105 (220)
Q Consensus 29 ~~~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~ 105 (220)
-.+...|.. .....++||+-+| +|..++ +|+.....+++.||.| .+.....++|++ +...+++++.+|+...
T Consensus 31 EalFNil~~~~i~g~~~LDlFAG-SGaLGl---EAlSRGA~~~~~vE~~-~~a~~~l~~N~~~l~~~~~~~~~~~da~~~ 105 (187)
T COG0742 31 EALFNILAPDEIEGARVLDLFAG-SGALGL---EALSRGAARVVFVEKD-RKAVKILKENLKALGLEGEARVLRNDALRA 105 (187)
T ss_pred HHHHHhccccccCCCEEEEecCC-ccHhHH---HHHhCCCceEEEEecC-HHHHHHHHHHHHHhCCccceEEEeecHHHH
Confidence 345555555 3788999999876 787777 4555546789999999 999999999998 5558899999999999
Q ss_pred hhhcCCC--ccEEEEcCCCCCccHHHHHHHHH--hhcCCCCCCEEEEEecCCCCCCccceEEEee-ecCCcEEEEEEeec
Q 042616 106 LMGDYRG--ADFVLIDCNIDIDGHKNVFRAAK--ESVMHGSGAGVIVGYNALPKGSWRGYKTHFL-PIGEGLLVTRIGEN 180 (220)
Q Consensus 106 L~~~~~~--~D~VfiD~~k~~~~y~~~l~~l~--~~~~L~~~Ggviv~dNv~~~g~~~~~~s~~l-Pig~Gl~v~~~~~~ 180 (220)
|+.+... ||+||+|++-..+.+......+. ..++|+| +++|++..--- +-+ ..-.++.+.+.+..
T Consensus 106 L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~-~~~iv~E~~~~---------~~~~~~~~~~~~~r~k~y 175 (187)
T COG0742 106 LKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKP-GALIVVEHDKD---------VELPELPANFELHREKKY 175 (187)
T ss_pred HHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCC-CcEEEEEeCCC---------cCccccCCCeEEEEEeec
Confidence 8877544 99999999984345533444444 6676765 99998873211 123 34556666665544
Q ss_pred CC
Q 042616 181 SD 182 (220)
Q Consensus 181 ~~ 182 (220)
|.
T Consensus 176 G~ 177 (187)
T COG0742 176 GQ 177 (187)
T ss_pred CC
Confidence 44
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-09 Score=101.90 Aligned_cols=107 Identities=12% Similarity=0.048 Sum_probs=83.3
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHh--c-----cc-CCcEEEEEcchhhhhhh
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSL--G-----RY-ANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l--~-----g~-~~~Ve~v~gda~~~L~~ 108 (220)
...++++||+||+| .|..+..+++. +...+|+.||.| ++.++.||+++ . .+ ..+++++++|+.+++..
T Consensus 294 ~~~~~~rVL~IG~G-~G~~~~~ll~~--~~v~~v~~VEid-~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~ 369 (521)
T PRK03612 294 ASARPRRVLVLGGG-DGLALREVLKY--PDVEQVTLVDLD-PAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK 369 (521)
T ss_pred hCCCCCeEEEEcCC-ccHHHHHHHhC--CCcCeEEEEECC-HHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh
Confidence 34678999999986 89988877752 213799999999 99999999953 2 12 25799999999999876
Q ss_pred cCCCccEEEEcCCCCC-----ccH-HHHHHHHHhhcCCCCCCEEEEEe
Q 042616 109 DYRGADFVLIDCNIDI-----DGH-KNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 109 ~~~~~D~VfiD~~k~~-----~~y-~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..++||+|++|..... ..| .++++.+.+. |+| ||++++.
T Consensus 370 ~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~--L~p-gG~lv~~ 414 (521)
T PRK03612 370 LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRR--LAP-DGLLVVQ 414 (521)
T ss_pred CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHh--cCC-CeEEEEe
Confidence 5678999999976411 122 4688999998 876 8888875
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=90.65 Aligned_cols=109 Identities=13% Similarity=0.035 Sum_probs=81.6
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
...|...+++ ...++.+|||+||| +|..+++||+. +.+|+++|.+ +.+++.|+++.+ ++ .+++++++
T Consensus 17 ~~~~~l~~~l----~~~~~~~vLDiGcG-~G~~a~~La~~----g~~V~gvD~S-~~~i~~a~~~~~~~~~-~~v~~~~~ 85 (197)
T PRK11207 17 RTHSEVLEAV----KVVKPGKTLDLGCG-NGRNSLYLAAN----GFDVTAWDKN-PMSIANLERIKAAENL-DNLHTAVV 85 (197)
T ss_pred CChHHHHHhc----ccCCCCcEEEECCC-CCHHHHHHHHC----CCEEEEEeCC-HHHHHHHHHHHHHcCC-CcceEEec
Confidence 3445444444 34467899999997 99999999973 6799999999 999999999886 55 46999999
Q ss_pred chhhhhhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEE
Q 042616 101 DAQKLLMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVI 147 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggvi 147 (220)
|..+.- ..++||+|+.-... +..+...+++.+.+. |+| ||.+
T Consensus 86 d~~~~~--~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~--Lkp-gG~~ 130 (197)
T PRK11207 86 DLNNLT--FDGEYDFILSTVVLMFLEAKTIPGLIANMQRC--TKP-GGYN 130 (197)
T ss_pred ChhhCC--cCCCcCEEEEecchhhCCHHHHHHHHHHHHHH--cCC-CcEE
Confidence 987642 24679999854321 113457889999998 886 7764
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.6e-09 Score=89.25 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=79.8
Q ss_pred HHHHHHHh---hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhh
Q 042616 30 EFISALAA---GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLL 106 (220)
Q Consensus 30 ~~L~~La~---~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L 106 (220)
++|...+. ..+..+|||+||| +|..++.++.. . .++|+++|.+ +.+++.|++|++...-+++++++|..+.+
T Consensus 23 ~~l~~~l~~~~~~~~~~vLDlGcG-~G~~~~~la~~-~--~~~v~~vD~s-~~~l~~a~~n~~~~~~~~~~~~~d~~~~~ 97 (223)
T PRK14967 23 QLLADALAAEGLGPGRRVLDLCTG-SGALAVAAAAA-G--AGSVTAVDIS-RRAVRSARLNALLAGVDVDVRRGDWARAV 97 (223)
T ss_pred HHHHHHHHhcccCCCCeEEEecCC-HHHHHHHHHHc-C--CCeEEEEECC-HHHHHHHHHHHHHhCCeeEEEECchhhhc
Confidence 44444433 2445799999997 89999988864 1 3599999999 99999999998722235899999998765
Q ss_pred hhcCCCccEEEEcCCCCC--c--------------------cHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 107 MGDYRGADFVLIDCNIDI--D--------------------GHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~k~~--~--------------------~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+ .++||+|+.+.+-.. . .+..+++.+.+. |++ ||.+++
T Consensus 98 ~--~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~--Lk~-gG~l~~ 157 (223)
T PRK14967 98 E--FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPAL--LAP-GGSLLL 157 (223)
T ss_pred c--CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHh--cCC-CcEEEE
Confidence 4 368999999864200 0 145567778887 876 777665
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.6e-10 Score=79.34 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=73.6
Q ss_pred EEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCC-
Q 042616 45 VMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNID- 123 (220)
Q Consensus 45 LEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~- 123 (220)
||+||| .|..+..|+.. .+.+|+++|++ +++++.+++.... .++.++++|+.++ |-..++||+|+.-.--.
T Consensus 1 LdiG~G-~G~~~~~l~~~---~~~~v~~~D~~-~~~~~~~~~~~~~--~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~~ 72 (95)
T PF08241_consen 1 LDIGCG-TGRFAAALAKR---GGASVTGIDIS-EEMLEQARKRLKN--EGVSFRQGDAEDL-PFPDNSFDVVFSNSVLHH 72 (95)
T ss_dssp EEET-T-TSHHHHHHHHT---TTCEEEEEES--HHHHHHHHHHTTT--STEEEEESBTTSS-SS-TT-EEEEEEESHGGG
T ss_pred CEecCc-CCHHHHHHHhc---cCCEEEEEeCC-HHHHHHHHhcccc--cCchheeehHHhC-ccccccccccccccceee
Confidence 799997 99999999986 27899999999 9999999998863 3466999998886 54468999999766441
Q ss_pred CccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 124 IDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 124 ~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
-.+...+++.+.+. |+| ||.+++
T Consensus 73 ~~~~~~~l~e~~rv--Lk~-gG~l~~ 95 (95)
T PF08241_consen 73 LEDPEAALREIYRV--LKP-GGRLVI 95 (95)
T ss_dssp SSHHHHHHHHHHHH--EEE-EEEEEE
T ss_pred ccCHHHHHHHHHHH--cCc-CeEEeC
Confidence 14678899999999 886 888774
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-09 Score=97.82 Aligned_cols=103 Identities=15% Similarity=0.071 Sum_probs=80.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
+..+||||||| +|..+..|+. .+++|++||.+ +++++.|+++.+ +...+|++++++++++ +...+.||+|+
T Consensus 131 ~g~~ILDIGCG-~G~~s~~La~----~g~~V~GID~s-~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l-~~~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCG-GGLLSEPLAR----MGATVTGVDAV-DKNVKIARLHADMDPVTSTIEYLCTTAEKL-ADEGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCC-CCHHHHHHHH----cCCEEEEEeCC-HHHHHHHHHHHHhcCcccceeEEecCHHHh-hhccCCCCEEE
Confidence 45689999997 8999998875 27899999999 999999998875 4446899999999875 33246899999
Q ss_pred EcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 118 IDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 118 iD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.-.-- .-.+....++.+.+. |+| ||.+++..+
T Consensus 204 ~~~vLeHv~d~~~~L~~l~r~--LkP-GG~liist~ 236 (322)
T PLN02396 204 SLEVIEHVANPAEFCKSLSAL--TIP-NGATVLSTI 236 (322)
T ss_pred EhhHHHhcCCHHHHHHHHHHH--cCC-CcEEEEEEC
Confidence 65422 114667899999998 887 777776643
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=91.34 Aligned_cols=97 Identities=15% Similarity=0.051 Sum_probs=72.6
Q ss_pred HHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcC
Q 042616 31 FISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDY 110 (220)
Q Consensus 31 ~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~ 110 (220)
+...+....++.+|||+||| +|+.+..|+..++ +.++++||++ +++++.|++++ .+++++++|+.+ |...
T Consensus 34 ~~~~l~~~~~~~~VLDiGCG-~G~~~~~L~~~~~--~~~v~giDiS-~~~l~~A~~~~----~~~~~~~~d~~~--~~~~ 103 (204)
T TIGR03587 34 FARALNRLPKIASILELGAN-IGMNLAALKRLLP--FKHIYGVEIN-EYAVEKAKAYL----PNINIIQGSLFD--PFKD 103 (204)
T ss_pred HHHHHHhcCCCCcEEEEecC-CCHHHHHHHHhCC--CCeEEEEECC-HHHHHHHHhhC----CCCcEEEeeccC--CCCC
Confidence 33334445567899999997 9999999988654 5899999999 99999999875 347788999877 3335
Q ss_pred CCccEEEEcCCC---CCccHHHHHHHHHhh
Q 042616 111 RGADFVLIDCNI---DIDGHKNVFRAAKES 137 (220)
Q Consensus 111 ~~~D~VfiD~~k---~~~~y~~~l~~l~~~ 137 (220)
++||+|+...-. +.......++.+.+.
T Consensus 104 ~sfD~V~~~~vL~hl~p~~~~~~l~el~r~ 133 (204)
T TIGR03587 104 NFFDLVLTKGVLIHINPDNLPTAYRELYRC 133 (204)
T ss_pred CCEEEEEECChhhhCCHHHHHHHHHHHHhh
Confidence 789999976643 112346667777776
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.6e-09 Score=87.95 Aligned_cols=115 Identities=18% Similarity=0.136 Sum_probs=87.0
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~ 109 (220)
+.+..++...++.+|||+||| +|..+..++....+ .++++++|.+ +..++.|+++......+++++++|+.+. +..
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G-~G~~~~~~a~~~~~-~~~v~~~d~~-~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~ 84 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCG-PGNDARELARRVGP-EGRVVGIDRS-EAMLALAKERAAGLGPNVEFVRGDADGL-PFP 84 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCC-CCHHHHHHHHhcCC-CcEEEEEeCC-HHHHHHHHHHhhCCCCceEEEecccccC-CCC
Confidence 334445566778899999997 89999999987643 6899999999 9999999998554446799999998763 222
Q ss_pred CCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 110 YRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 110 ~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
.+.||+|+..... .-.+....++.+.+. |+| ||.+++..
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~--L~~-gG~l~~~~ 124 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPARALAEIARV--LRP-GGRVVVLD 124 (241)
T ss_pred CCCceEEEEechhhccCCHHHHHHHHHHH--hcC-CcEEEEEe
Confidence 4689999987533 114567889999998 887 77666543
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.8e-09 Score=100.39 Aligned_cols=101 Identities=12% Similarity=0.068 Sum_probs=79.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
+.+|||+||| +|+.++.|+...+ +.+|+++|.+ +.+++.|++|+. ++.++++++++|..+.++ .++||+|+.
T Consensus 139 ~~~VLDlG~G-sG~iai~la~~~p--~~~v~avDis-~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--~~~fDlIvs 212 (506)
T PRK01544 139 FLNILELGTG-SGCIAISLLCELP--NANVIATDIS-LDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--KQKFDFIVS 212 (506)
T ss_pred CCEEEEccCc-hhHHHHHHHHHCC--CCeEEEEECC-HHHHHHHHHHHHHcCCccceeeeecchhhhCc--CCCccEEEE
Confidence 4689999997 9999999998764 5899999999 999999999987 666789999999877554 357999998
Q ss_pred cCCCCC---------------------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 119 DCNIDI---------------------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 119 D~~k~~---------------------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.+--. ..|..+++.+.+. |+| ||.+++.
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~--L~~-gG~l~lE 268 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQF--LKP-NGKIILE 268 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHh--ccC-CCEEEEE
Confidence 654200 1244556667777 876 7777764
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.5e-09 Score=85.53 Aligned_cols=107 Identities=12% Similarity=0.001 Sum_probs=80.3
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
.+...+..+||||||| +|..|..|+.. +++|++||.| +.+++.+++++... ++++++++|+.++... ...||
T Consensus 8 ~~~~~~~~~vLEiG~G-~G~lt~~l~~~----~~~v~~vE~~-~~~~~~~~~~~~~~-~~v~ii~~D~~~~~~~-~~~~d 79 (169)
T smart00650 8 AANLRPGDTVLEIGPG-KGALTEELLER----AARVTAIEID-PRLAPRLREKFAAA-DNLTVIHGDALKFDLP-KLQPY 79 (169)
T ss_pred hcCCCCcCEEEEECCC-ccHHHHHHHhc----CCeEEEEECC-HHHHHHHHHHhccC-CCEEEEECchhcCCcc-ccCCC
Confidence 3344566799999997 99999998874 5799999999 99999999998753 5899999999986432 24699
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.||.+.+- ....+.+..+.....+. .+|++++..-
T Consensus 80 ~vi~n~Py--~~~~~~i~~~l~~~~~~-~~~~l~~q~e 114 (169)
T smart00650 80 KVVGNLPY--NISTPILFKLLEEPPAF-RDAVLMVQKE 114 (169)
T ss_pred EEEECCCc--ccHHHHHHHHHhcCCCc-ceEEEEEEHH
Confidence 99998876 44456666665542232 4777776544
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=6e-09 Score=95.10 Aligned_cols=116 Identities=11% Similarity=0.079 Sum_probs=85.2
Q ss_pred CChhHHHHHHHHHhh-CC--CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 24 KEPDVGEFISALAAG-NN--AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 24 ~~p~~~~~L~~La~~-~~--a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
+.+.+.+-|...+.. .+ ..++||++|| +|..|+.|+.. ..+|++||.+ +.+++.|++|++ ++ ++++++
T Consensus 187 ~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G-~G~~sl~la~~----~~~v~~vE~~-~~ai~~a~~N~~~~~~-~~v~~~ 259 (362)
T PRK05031 187 PNAAVNEKMLEWALDATKGSKGDLLELYCG-NGNFTLALARN----FRRVLATEIS-KPSVAAAQYNIAANGI-DNVQII 259 (362)
T ss_pred cCHHHHHHHHHHHHHHhhcCCCeEEEEecc-ccHHHHHHHhh----CCEEEEEECC-HHHHHHHHHHHHHhCC-CcEEEE
Confidence 344455444444332 22 3579999997 99999988875 3589999999 999999999997 66 589999
Q ss_pred EcchhhhhhhcC---------------CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 99 KGDAQKLLMGDY---------------RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 99 ~gda~~~L~~~~---------------~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.+|+.++++.+. ..||+||+|+++ .+.+.+.++.+.+ +++=++|.-|-
T Consensus 260 ~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR-~G~~~~~l~~l~~-----~~~ivyvSC~p 322 (362)
T PRK05031 260 RMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR-AGLDDETLKLVQA-----YERILYISCNP 322 (362)
T ss_pred ECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCC-CCCcHHHHHHHHc-----cCCEEEEEeCH
Confidence 999999876531 148999999997 4556777777764 33555555544
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-09 Score=89.56 Aligned_cols=106 Identities=10% Similarity=-0.007 Sum_probs=78.1
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~ 107 (220)
+++.. +...++.+|||+||| +|..+++||.. +.+|+++|.+ +.+++.++++.+ ++ ++++..+|.... +
T Consensus 21 ~l~~~-~~~~~~~~vLDiGcG-~G~~a~~la~~----g~~V~~iD~s-~~~l~~a~~~~~~~~~--~v~~~~~d~~~~-~ 90 (195)
T TIGR00477 21 AVREA-VKTVAPCKTLDLGCG-QGRNSLYLSLA----GYDVRAWDHN-PASIASVLDMKARENL--PLRTDAYDINAA-A 90 (195)
T ss_pred HHHHH-hccCCCCcEEEeCCC-CCHHHHHHHHC----CCeEEEEECC-HHHHHHHHHHHHHhCC--CceeEeccchhc-c
Confidence 44433 355678899999997 99999999973 6799999999 999999998876 54 377888887542 2
Q ss_pred hcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEE-EEE
Q 042616 108 GDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGV-IVG 149 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggv-iv~ 149 (220)
+.++||+|+.-..- +..+...+++.+.+. |+| ||+ ++.
T Consensus 91 -~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~lli~ 132 (195)
T TIGR00477 91 -LNEDYDFIFSTVVFMFLQAGRVPEIIANMQAH--TRP-GGYNLIV 132 (195)
T ss_pred -ccCCCCEEEEecccccCCHHHHHHHHHHHHHH--hCC-CcEEEEE
Confidence 24679999754321 113557889999998 886 776 443
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.8e-09 Score=96.34 Aligned_cols=117 Identities=15% Similarity=0.042 Sum_probs=85.8
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccC--CcEEEEEcchhh
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYA--NCIEFVKGDAQK 104 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~--~~Ve~v~gda~~ 104 (220)
.+||..........+|||+||| +|..++.++...+ ..+|+++|.+ +.+++.|++|++ +.. .+++++.+|+.+
T Consensus 217 trllL~~lp~~~~~~VLDLGCG-tGvi~i~la~~~P--~~~V~~vD~S-~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCG-NGVIGLTLLDKNP--QAKVVFVDES-PMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred HHHHHHhCCcccCCeEEEEecc-ccHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 3444444344444689999997 9999999998754 5899999999 999999999996 322 479999999876
Q ss_pred hhhhcCCCccEEEEcCCCCCc------cHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 105 LLMGDYRGADFVLIDCNIDID------GHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~~k~~~------~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.++ ..+||+|+.+.+-+.. ...+.++.+.+. |+|.|-++++.|-.
T Consensus 293 ~~~--~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~--LkpGG~L~iV~nr~ 343 (378)
T PRK15001 293 GVE--PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRC--LKINGELYIVANRH 343 (378)
T ss_pred cCC--CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHh--cccCCEEEEEEecC
Confidence 553 2579999998774222 124667888888 88856566665543
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-09 Score=92.98 Aligned_cols=126 Identities=14% Similarity=0.114 Sum_probs=94.0
Q ss_pred HHHHHhcC-CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--
Q 042616 13 YLQALKMG-KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-- 89 (220)
Q Consensus 13 Y~~~l~~~-~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-- 89 (220)
|--.|+-+ |..-.|+.+..++.| ...+...|+|-||| +|..+.+|++|..+ -|||++.|.+ +.+++.|++.|+
T Consensus 78 WTl~LphRTQI~Yt~Dia~I~~~L-~i~PGsvV~EsGTG-SGSlShaiaraV~p-tGhl~tfefH-~~Ra~ka~eeFr~h 153 (314)
T KOG2915|consen 78 WTLALPHRTQILYTPDIAMILSML-EIRPGSVVLESGTG-SGSLSHAIARAVAP-TGHLYTFEFH-ETRAEKALEEFREH 153 (314)
T ss_pred hhhhccCcceEEecccHHHHHHHh-cCCCCCEEEecCCC-cchHHHHHHHhhCc-CcceEEEEec-HHHHHHHHHHHHHh
Confidence 33344444 345566666666655 89999999999997 89999999999988 8999999999 999999999997
Q ss_pred ccCCcEEEEEcchhhh--hhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 90 RYANCIEFVKGDAQKL--LMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 90 g~~~~Ve~v~gda~~~--L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
++.++|++++-|.... +.+ ...+|.||+|-+. .. ..+..+.+. |+..||.+++
T Consensus 154 gi~~~vt~~hrDVc~~GF~~k-s~~aDaVFLDlPa--Pw--~AiPha~~~--lk~~g~r~cs 208 (314)
T KOG2915|consen 154 GIGDNVTVTHRDVCGSGFLIK-SLKADAVFLDLPA--PW--EAIPHAAKI--LKDEGGRLCS 208 (314)
T ss_pred CCCcceEEEEeecccCCcccc-ccccceEEEcCCC--hh--hhhhhhHHH--hhhcCceEEe
Confidence 8889999999987652 211 4679999999987 21 223333333 4445666665
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.2e-09 Score=89.87 Aligned_cols=116 Identities=13% Similarity=0.101 Sum_probs=85.6
Q ss_pred hhHHHHHHHHH---hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcc
Q 042616 26 PDVGEFISALA---AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGD 101 (220)
Q Consensus 26 p~~~~~L~~La---~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gd 101 (220)
|+...++..+. ...++.+|||+||| +|..++.|+...+ ..+++++|.+ +.+++.|+++++ ....+++++++|
T Consensus 91 ~~te~l~~~~~~~~~~~~~~~vLDiG~G-sG~~~~~la~~~~--~~~v~~iDis-~~~l~~a~~n~~~~~~~~i~~~~~d 166 (275)
T PRK09328 91 PETEELVEWALEALLLKEPLRVLDLGTG-SGAIALALAKERP--DAEVTAVDIS-PEALAVARRNAKHGLGARVEFLQGD 166 (275)
T ss_pred CCcHHHHHHHHHhccccCCCEEEEEcCc-HHHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 34444444443 24567899999997 9999999998764 5899999999 999999999997 555689999999
Q ss_pred hhhhhhhcCCCccEEEEcCCCCC---------------------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDI---------------------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~---------------------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..+.++ .++||+|+.+.+--. ..|..+++.+.+. |+| ||.+++.
T Consensus 167 ~~~~~~--~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~--Lk~-gG~l~~e 237 (275)
T PRK09328 167 WFEPLP--GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRY--LKP-GGWLLLE 237 (275)
T ss_pred ccCcCC--CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHh--ccc-CCEEEEE
Confidence 866443 368999998754200 1245566777777 876 7877764
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=86.01 Aligned_cols=106 Identities=20% Similarity=0.220 Sum_probs=83.0
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
...+..+|||+||| .|..+..++...++ ..+++++|.+ +..++.+++++. ++..+++++.+|+.+.. ...+.||
T Consensus 48 ~~~~~~~vldiG~G-~G~~~~~l~~~~~~-~~~v~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D 123 (239)
T PRK00216 48 GVRPGDKVLDLACG-TGDLAIALAKAVGK-TGEVVGLDFS-EGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFD 123 (239)
T ss_pred CCCCCCeEEEeCCC-CCHHHHHHHHHcCC-CCeEEEEeCC-HHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCcc
Confidence 44456899999997 89999999988753 6899999999 999999999986 35567999999998743 2246899
Q ss_pred EEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 115 FVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 115 ~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|++.... ...+....++.+.+. |+| ||.+++
T Consensus 124 ~I~~~~~l~~~~~~~~~l~~~~~~--L~~-gG~li~ 156 (239)
T PRK00216 124 AVTIAFGLRNVPDIDKALREMYRV--LKP-GGRLVI 156 (239)
T ss_pred EEEEecccccCCCHHHHHHHHHHh--ccC-CcEEEE
Confidence 99976432 114678889999998 876 666554
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.7e-09 Score=90.71 Aligned_cols=107 Identities=15% Similarity=0.060 Sum_probs=81.0
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
...+..+||||||| +|..+..|+.. .+++|+++|.+ +.+++.|++++.. .++|+++++|+.+. +...++||+|
T Consensus 49 ~l~~~~~VLDiGcG-~G~~a~~la~~---~~~~v~giD~s-~~~~~~a~~~~~~-~~~i~~~~~D~~~~-~~~~~~FD~V 121 (263)
T PTZ00098 49 ELNENSKVLDIGSG-LGGGCKYINEK---YGAHVHGVDIC-EKMVNIAKLRNSD-KNKIEFEANDILKK-DFPENTFDMI 121 (263)
T ss_pred CCCCCCEEEEEcCC-CChhhHHHHhh---cCCEEEEEECC-HHHHHHHHHHcCc-CCceEEEECCcccC-CCCCCCeEEE
Confidence 45677899999997 89999888764 26799999999 9999999998764 36799999998753 2224689999
Q ss_pred EE-cCCCCC--ccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 117 LI-DCNIDI--DGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 117 fi-D~~k~~--~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+. ++-... .+...+++.+.+. |+| ||.+++.+..
T Consensus 122 ~s~~~l~h~~~~d~~~~l~~i~r~--LkP-GG~lvi~d~~ 158 (263)
T PTZ00098 122 YSRDAILHLSYADKKKLFEKCYKW--LKP-NGILLITDYC 158 (263)
T ss_pred EEhhhHHhCCHHHHHHHHHHHHHH--cCC-CcEEEEEEec
Confidence 97 432211 2567889999999 887 6666655443
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-08 Score=95.01 Aligned_cols=120 Identities=10% Similarity=0.068 Sum_probs=85.8
Q ss_pred CChhHHHHHHHHHhh-CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch
Q 042616 24 KEPDVGEFISALAAG-NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA 102 (220)
Q Consensus 24 ~~p~~~~~L~~La~~-~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda 102 (220)
-.|+...++..+... .+..+|||+||| +|..++.|+...+ +.+|+++|.+ +++++.|++|++....+++++++|.
T Consensus 234 PRpeTE~LVe~aL~~l~~~~rVLDLGcG-SG~IaiaLA~~~p--~a~VtAVDiS-~~ALe~AreNa~~~g~rV~fi~gDl 309 (423)
T PRK14966 234 PRPETEHLVEAVLARLPENGRVWDLGTG-SGAVAVTVALERP--DAFVRASDIS-PPALETARKNAADLGARVEFAHGSW 309 (423)
T ss_pred CCccHHHHHHHhhhccCCCCEEEEEeCh-hhHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHHHHHcCCcEEEEEcch
Confidence 345556666655443 345789999997 9999998887543 5899999999 9999999999973334799999998
Q ss_pred hhhhhhcCCCccEEEEcCCCCC--------------------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 103 QKLLMGDYRGADFVLIDCNIDI--------------------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k~~--------------------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+......++||+|+.+.+.-. ..|.++++.+.+. |+| ||.+++.
T Consensus 310 ~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~--Lkp-gG~lilE 380 (423)
T PRK14966 310 FDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDR--LAE-GGFLLLE 380 (423)
T ss_pred hccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHh--cCC-CcEEEEE
Confidence 6532111357999999876400 0244566666777 876 7776653
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-08 Score=88.35 Aligned_cols=101 Identities=16% Similarity=0.106 Sum_probs=76.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEc
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLID 119 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD 119 (220)
+.+|||+||| +|..++.|+...+ +.+|+++|.+ +.+++.|++|++.. .++++++|..+.++.. .+.||+|+.|
T Consensus 87 ~~~vLDlg~G-sG~i~l~la~~~~--~~~v~~vDis-~~al~~A~~N~~~~--~~~~~~~D~~~~l~~~~~~~fDlVv~N 160 (251)
T TIGR03704 87 TLVVVDLCCG-SGAVGAALAAALD--GIELHAADID-PAAVRCARRNLADA--GGTVHEGDLYDALPTALRGRVDILAAN 160 (251)
T ss_pred CCEEEEecCc-hHHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHHHHHc--CCEEEEeechhhcchhcCCCEeEEEEC
Confidence 3589999997 9999999987654 4699999999 99999999999732 2588999998766532 3579999999
Q ss_pred CCCCC---------------------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 120 CNIDI---------------------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 120 ~~k~~---------------------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+--. ..|.++++.+.+. |+| ||.++..
T Consensus 161 PPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~--L~~-gG~l~l~ 215 (251)
T TIGR03704 161 APYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDW--LAP-GGHLLVE 215 (251)
T ss_pred CCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHh--cCC-CCEEEEE
Confidence 85310 0134666777777 876 6666654
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-09 Score=80.90 Aligned_cols=96 Identities=18% Similarity=0.151 Sum_probs=70.7
Q ss_pred EEEEcCCchHHHHHHHHHHcCCC-CcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE-cCC
Q 042616 44 IVMACSSIAVSRTLALVAAARQT-GGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI-DCN 121 (220)
Q Consensus 44 ILEIGtg~~G~sTl~LA~A~~~~-~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi-D~~ 121 (220)
|||+||| +|..+..++...+.. ..++++||.+ +++++.++++.....-+++++++|+.+ ++...++||+|+. ...
T Consensus 1 ILDlgcG-~G~~~~~l~~~~~~~~~~~~~gvD~s-~~~l~~~~~~~~~~~~~~~~~~~D~~~-l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCG-TGRVTRALARRFDAGPSSRVIGVDIS-PEMLELAKKRFSEDGPKVRFVQADARD-LPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-T-TSHHHHHHHHHS-----SEEEEEES--HHHHHHHHHHSHHTTTTSEEEESCTTC-HHHHSSSEEEEEE-TTG
T ss_pred CEEeecC-CcHHHHHHHHHhhhcccceEEEEECC-HHHHHHHHHhchhcCCceEEEECCHhH-CcccCCCeeEEEEcCCc
Confidence 7999997 999999999887321 2799999999 999999999986221379999999988 4455679999998 441
Q ss_pred C---CCccHHHHHHHHHhhcCCCCCCE
Q 042616 122 I---DIDGHKNVFRAAKESVMHGSGAG 145 (220)
Q Consensus 122 k---~~~~y~~~l~~l~~~~~L~~~Gg 145 (220)
- ...+....++.+.+. |+| ||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~--l~p-gG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARL--LRP-GG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHT--EEE-EE
T ss_pred cCCCCHHHHHHHHHHHHHH--hCC-CC
Confidence 2 113457778888887 776 65
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.1e-09 Score=92.40 Aligned_cols=105 Identities=12% Similarity=0.070 Sum_probs=79.8
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~ 107 (220)
+++..+ ...++.+|||+||| +|..+++|+.. +.+|+++|.+ +.+++.++++++ ++ ++++..+|..+..
T Consensus 111 ~~~~~~-~~~~~~~vLDlGcG-~G~~~~~la~~----g~~V~avD~s-~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~- 180 (287)
T PRK12335 111 EVLEAV-QTVKPGKALDLGCG-QGRNSLYLALL----GFDVTAVDIN-QQSLENLQEIAEKENL--NIRTGLYDINSAS- 180 (287)
T ss_pred HHHHHh-hccCCCCEEEeCCC-CCHHHHHHHHC----CCEEEEEECC-HHHHHHHHHHHHHcCC--ceEEEEechhccc-
Confidence 444433 34567799999997 99999999873 6899999999 999999999886 44 6899999886632
Q ss_pred hcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 108 GDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
+.++||+|+.-.-- +..+...+++.+.+. |+| ||+++
T Consensus 181 -~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~--Lkp-gG~~l 220 (287)
T PRK12335 181 -IQEEYDFILSTVVLMFLNRERIPAIIKNMQEH--TNP-GGYNL 220 (287)
T ss_pred -ccCCccEEEEcchhhhCCHHHHHHHHHHHHHh--cCC-CcEEE
Confidence 25789999865421 114567889999998 886 77633
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.7e-09 Score=88.48 Aligned_cols=103 Identities=12% Similarity=0.013 Sum_probs=80.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
++||||||| .|..+..++...+ +.+|+++|.+ ++.++.|+++++ ++.++++++.+|..+. +. .++||+|+.-
T Consensus 1 ~~vLDiGcG-~G~~~~~la~~~~--~~~v~gid~s-~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~~-~~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCG-YGSDLIDLAERHP--HLQLHGYTIS-PEQAEVGRERIRALGLQGRIRIFYRDSAKD-PF-PDTYDLVFGF 74 (224)
T ss_pred CeEEEECCC-CCHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHHHHHhcCCCcceEEEecccccC-CC-CCCCCEeehH
Confidence 579999997 8999999988653 4799999999 999999999986 7778899999998654 22 3589999853
Q ss_pred CCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 120 CNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 120 ~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.-- ...+...+++.+.+. |+| ||.+++.+..
T Consensus 75 ~~l~~~~~~~~~l~~~~~~--Lkp-gG~l~i~~~~ 106 (224)
T smart00828 75 EVIHHIKDKMDLFSNISRH--LKD-GGHLVLADFI 106 (224)
T ss_pred HHHHhCCCHHHHHHHHHHH--cCC-CCEEEEEEcc
Confidence 211 114567899999998 887 7777766553
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.97 E-value=4e-09 Score=93.52 Aligned_cols=107 Identities=18% Similarity=0.199 Sum_probs=78.9
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCC-cEEEEEeCCchhHHHHHHHHhc--ccC-CcEEEEEcchhhhhhhc-
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTG-GRVVCILSGVIGDIDASKKSLG--RYA-NCIEFVKGDAQKLLMGD- 109 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~-grV~tIE~d~~~~~~~Ar~~l~--g~~-~~Ve~v~gda~~~L~~~- 109 (220)
+....+.++||++-| .+|.++++.+.+ | .+|++||.+ ...++.|++|++ ++. ++++++.+|+.+++..+
T Consensus 118 v~~~~~gkrvLnlFs-YTGgfsv~Aa~g----GA~~v~~VD~S-~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~ 191 (286)
T PF10672_consen 118 VRKYAKGKRVLNLFS-YTGGFSVAAAAG----GAKEVVSVDSS-KRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK 191 (286)
T ss_dssp HHHHCTTCEEEEET--TTTHHHHHHHHT----TESEEEEEES--HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH
T ss_pred HHHHcCCCceEEecC-CCCHHHHHHHHC----CCCEEEEEeCC-HHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh
Confidence 334456789999997 589888876553 3 479999999 999999999998 664 68999999999988654
Q ss_pred -CCCccEEEEcCCC---CC----ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 110 -YRGADFVLIDCNI---DI----DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 110 -~~~~D~VfiD~~k---~~----~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+.||+|++|++. .. .+|.+++..+.++ |.| ||+|++-
T Consensus 192 ~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~l--l~~-gG~l~~~ 237 (286)
T PF10672_consen 192 KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKL--LKP-GGLLLTC 237 (286)
T ss_dssp HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHT--EEE-EEEEEEE
T ss_pred cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHh--cCC-CCEEEEE
Confidence 4689999999987 11 4788888888888 876 7776643
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-09 Score=88.37 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=57.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcC-CC-ccEEE
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDY-RG-ADFVL 117 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~-~~-~D~Vf 117 (220)
+.|+|+.|| .|-.|+.+|.. ..+|++||.| +.+++.|+.|.+ |+.++|++++||+.+.++.+. .. +|+||
T Consensus 1 ~~vlD~fcG-~GGNtIqFA~~----~~~Viaidid-~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vF 74 (163)
T PF09445_consen 1 TTVLDAFCG-VGGNTIQFART----FDRVIAIDID-PERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVF 74 (163)
T ss_dssp SEEEETT-T-TSHHHHHHHHT----T-EEEEEES--HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEE
T ss_pred CEEEEeccC-cCHHHHHHHHh----CCeEEEEECC-HHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEE
Confidence 368998876 89999999985 5699999999 999999999999 778899999999999987753 22 79999
Q ss_pred EcCCC
Q 042616 118 IDCNI 122 (220)
Q Consensus 118 iD~~k 122 (220)
++++=
T Consensus 75 lSPPW 79 (163)
T PF09445_consen 75 LSPPW 79 (163)
T ss_dssp E---B
T ss_pred ECCCC
Confidence 99854
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.1e-09 Score=89.17 Aligned_cols=112 Identities=10% Similarity=0.058 Sum_probs=82.9
Q ss_pred ChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh
Q 042616 25 EPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK 104 (220)
Q Consensus 25 ~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~ 104 (220)
....++.|..+....++.+|||+||| +|..+..|+. .+.+|+++|.+ +.+++.|+++.. .+.++++|+.+
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG-~G~~~~~l~~----~~~~v~~~D~s-~~~l~~a~~~~~----~~~~~~~d~~~ 96 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCG-PGWMSRYWRE----RGSQVTALDLS-PPMLAQARQKDA----ADHYLAGDIES 96 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCC-CCHHHHHHHH----cCCeEEEEECC-HHHHHHHHhhCC----CCCEEEcCccc
Confidence 34455555554455567899999997 8998888865 26899999999 999999998753 35688999877
Q ss_pred hhhhcCCCccEEEEcCCCC-CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 105 LLMGDYRGADFVLIDCNID-IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
. |...++||+|+...... ..+....+..+.+. |+| ||.+++-
T Consensus 97 ~-~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~--Lk~-gG~l~~~ 139 (251)
T PRK10258 97 L-PLATATFDLAWSNLAVQWCGNLSTALRELYRV--VRP-GGVVAFT 139 (251)
T ss_pred C-cCCCCcEEEEEECchhhhcCCHHHHHHHHHHH--cCC-CeEEEEE
Confidence 3 33246899999765431 14567889999998 876 8887765
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.8e-09 Score=89.82 Aligned_cols=126 Identities=11% Similarity=0.099 Sum_probs=97.7
Q ss_pred CCCChhhhHHHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHH
Q 042616 2 SSWSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDI 81 (220)
Q Consensus 2 ~~w~~e~a~~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~ 81 (220)
+.|||....+ |-++ .. .-+.=|.+.+...++.+|+|+||| .|-+|-.|++--+ +..|++||.+ ++++
T Consensus 1 ~~W~p~~Yl~-F~~e---Rt-----RPa~dLla~Vp~~~~~~v~DLGCG-pGnsTelL~~RwP--~A~i~GiDsS-~~Ml 67 (257)
T COG4106 1 MDWNPDQYLQ-FEDE---RT-----RPARDLLARVPLERPRRVVDLGCG-PGNSTELLARRWP--DAVITGIDSS-PAML 67 (257)
T ss_pred CCCCHHHHHH-HHHh---cc-----CcHHHHHhhCCccccceeeecCCC-CCHHHHHHHHhCC--CCeEeeccCC-HHHH
Confidence 4688875443 3222 11 123334455577889999999997 9999999998765 6999999999 9999
Q ss_pred HHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCC--ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 82 DASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDI--DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 82 ~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~--~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.|++.+ -+.+|..+|..+.-|. .++|++|-.+-. + .++.+.|..+... |.| ||++.+.
T Consensus 68 a~Aa~rl----p~~~f~~aDl~~w~p~--~~~dllfaNAvl-qWlpdH~~ll~rL~~~--L~P-gg~LAVQ 128 (257)
T COG4106 68 AKAAQRL----PDATFEEADLRTWKPE--QPTDLLFANAVL-QWLPDHPELLPRLVSQ--LAP-GGVLAVQ 128 (257)
T ss_pred HHHHHhC----CCCceecccHhhcCCC--Cccchhhhhhhh-hhccccHHHHHHHHHh--hCC-CceEEEE
Confidence 9998776 5789999999998764 789999987743 1 5778899999988 876 9998875
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.8e-09 Score=91.91 Aligned_cols=112 Identities=11% Similarity=0.031 Sum_probs=80.9
Q ss_pred HHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhh
Q 042616 31 FISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 31 ~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~ 108 (220)
.+...+...+..+||||||| -|..++++|+.- +.+|++|..+ ++..+.|++.++ |+.++|++..+|..++-
T Consensus 53 ~~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~---g~~v~gitlS-~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~-- 125 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCG-WGGLAIYAAERY---GCHVTGITLS-EEQAEYARERIREAGLEDRVEVRLQDYRDLP-- 125 (273)
T ss_dssp HHHTTTT--TT-EEEEES-T-TSHHHHHHHHHH-----EEEEEES--HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHc---CcEEEEEECC-HHHHHHHHHHHHhcCCCCceEEEEeeccccC--
Confidence 44444456778999999997 899999999863 6899999999 999999999997 88889999999987742
Q ss_pred cCCCccEEE-EcCCC--CCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 109 DYRGADFVL-IDCNI--DIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 109 ~~~~~D~Vf-iD~~k--~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.+||.|+ |+.-- ...+|..+|+.+.+. |+| ||+++.+.+..
T Consensus 126 --~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~--Lkp-gG~~~lq~i~~ 169 (273)
T PF02353_consen 126 --GKFDRIVSIEMFEHVGRKNYPAFFRKISRL--LKP-GGRLVLQTITH 169 (273)
T ss_dssp ---S-SEEEEESEGGGTCGGGHHHHHHHHHHH--SET-TEEEEEEEEEE
T ss_pred --CCCCEEEEEechhhcChhHHHHHHHHHHHh--cCC-CcEEEEEeccc
Confidence 4899987 32211 116889999999999 986 99988876653
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-08 Score=83.66 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=90.4
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA 102 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda 102 (220)
.+.|...+++.......+..+||||||| +|..+..++.. +.+++++|++ +..++.|++++.....+++++.+++
T Consensus 31 ~~~~~~~~~l~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~----~~~v~~iD~s-~~~~~~a~~~~~~~~~~~~~~~~~~ 104 (233)
T PRK05134 31 RINPLRLNYIREHAGGLFGKRVLDVGCG-GGILSESMARL----GADVTGIDAS-EENIEVARLHALESGLKIDYRQTTA 104 (233)
T ss_pred HhhHHHHHHHHHhccCCCCCeEEEeCCC-CCHHHHHHHHc----CCeEEEEcCC-HHHHHHHHHHHHHcCCceEEEecCH
Confidence 4556667788877777778999999997 89998888763 5789999999 9999999998863223689999999
Q ss_pred hhhhhhcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 103 QKLLMGDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+......+.||+|+....- ...+....++.+.+. |+| ||.+++.
T Consensus 105 ~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~--L~~-gG~l~v~ 150 (233)
T PRK05134 105 EELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKL--VKP-GGLVFFS 150 (233)
T ss_pred HHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHH--cCC-CcEEEEE
Confidence 88753334789999875432 114567788999998 876 6666654
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-08 Score=84.84 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.++++|||+||| +|..+..|+...+ ..+++++|++ +.+++.+++.+. .+++++.+|+.+.. ...++||+|+.
T Consensus 33 ~~~~~vLDlG~G-~G~~~~~l~~~~~--~~~~~~~D~~-~~~~~~~~~~~~---~~~~~~~~d~~~~~-~~~~~fD~vi~ 104 (240)
T TIGR02072 33 FIPASVLDIGCG-TGYLTRALLKRFP--QAEFIALDIS-AGMLAQAKTKLS---ENVQFICGDAEKLP-LEDSSFDLIVS 104 (240)
T ss_pred CCCCeEEEECCC-ccHHHHHHHHhCC--CCcEEEEeCh-HHHHHHHHHhcC---CCCeEEecchhhCC-CCCCceeEEEE
Confidence 446799999997 9999999998764 4789999999 999999888765 47899999998753 22468999998
Q ss_pred cCCCC-CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 119 DCNID-IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 119 D~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
...-. ..+....++.+.+. |+| ||.+++.
T Consensus 105 ~~~l~~~~~~~~~l~~~~~~--L~~-~G~l~~~ 134 (240)
T TIGR02072 105 NLALQWCDDLSQALSELARV--LKP-GGLLAFS 134 (240)
T ss_pred hhhhhhccCHHHHHHHHHHH--cCC-CcEEEEE
Confidence 76431 13567889999998 876 7877764
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-08 Score=91.57 Aligned_cols=114 Identities=9% Similarity=0.055 Sum_probs=82.8
Q ss_pred ChhHHHHHH-HHHhhCC--CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 25 EPDVGEFIS-ALAAGNN--AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 25 ~p~~~~~L~-~La~~~~--a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
.+...+.|. ......+ ++++||+||| +|.+++.|+..+ .+|++||.+ +++++.|++|++ ++ ++++++.
T Consensus 179 N~~~~~~l~~~v~~~~~~~~~~vlDl~~G-~G~~sl~la~~~----~~v~~vE~~-~~av~~a~~n~~~~~~-~~v~~~~ 251 (353)
T TIGR02143 179 NAAVNIKMLEWACEVTQGSKGDLLELYCG-NGNFSLALAQNF----RRVLATEIA-KPSVNAAQYNIAANNI-DNVQIIR 251 (353)
T ss_pred CHHHHHHHHHHHHHHhhcCCCcEEEEecc-ccHHHHHHHHhC----CEEEEEECC-HHHHHHHHHHHHHcCC-CcEEEEE
Confidence 344444444 3333222 3579999997 999999998763 589999999 999999999997 66 5799999
Q ss_pred cchhhhhhhc---------C------CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 100 GDAQKLLMGD---------Y------RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 100 gda~~~L~~~---------~------~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+|+.++++.. . ..||+||+|+++ .+.....++.+.+ |++=++|.-|
T Consensus 252 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR-~G~~~~~l~~l~~-----~~~ivYvsC~ 312 (353)
T TIGR02143 252 MSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPR-AGLDPDTCKLVQA-----YERILYISCN 312 (353)
T ss_pred cCHHHHHHHHhhccccccccccccccCCCCEEEECCCC-CCCcHHHHHHHHc-----CCcEEEEEcC
Confidence 9999988641 1 138999999996 4556777787754 3344444443
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-08 Score=95.62 Aligned_cols=107 Identities=14% Similarity=0.039 Sum_probs=83.5
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
...+..+||||||| +|..++.|+... +.+|+++|++ +++++.|+++..+...+++++++|+.+.. ...++||+|
T Consensus 263 ~~~~~~~vLDiGcG-~G~~~~~la~~~---~~~v~gvDiS-~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I 336 (475)
T PLN02336 263 DLKPGQKVLDVGCG-IGGGDFYMAENF---DVHVVGIDLS-VNMISFALERAIGRKCSVEFEVADCTKKT-YPDNSFDVI 336 (475)
T ss_pred CCCCCCEEEEEecc-CCHHHHHHHHhc---CCEEEEEECC-HHHHHHHHHHhhcCCCceEEEEcCcccCC-CCCCCEEEE
Confidence 44567899999997 899999888753 5799999999 99999999988766568999999987642 113679999
Q ss_pred EEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 117 LIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 117 fiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+....- ...+...+++.+.+. |+| ||.+++.+.
T Consensus 337 ~s~~~l~h~~d~~~~l~~~~r~--Lkp-gG~l~i~~~ 370 (475)
T PLN02336 337 YSRDTILHIQDKPALFRSFFKW--LKP-GGKVLISDY 370 (475)
T ss_pred EECCcccccCCHHHHHHHHHHH--cCC-CeEEEEEEe
Confidence 975332 224678899999999 887 777766543
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-08 Score=91.01 Aligned_cols=106 Identities=9% Similarity=-0.031 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
...++||||||| +|+.+..|+..- ..+|++||++ +.++..++..-+ +...+|+++.+++.++ |. .+.||+|
T Consensus 121 l~g~~VLDIGCG-~G~~~~~la~~g---~~~V~GiD~S-~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-~~~FD~V 193 (322)
T PRK15068 121 LKGRTVLDVGCG-NGYHMWRMLGAG---AKLVVGIDPS-QLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-LKAFDTV 193 (322)
T ss_pred CCCCEEEEeccC-CcHHHHHHHHcC---CCEEEEEcCC-HHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-cCCcCEE
Confidence 456899999997 999999998752 3579999999 888765444322 3335799999998874 44 6789999
Q ss_pred EEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 117 LIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 117 fiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|.=+.. +..+....++.+.+. |+| ||.++++....
T Consensus 194 ~s~~vl~H~~dp~~~L~~l~~~--Lkp-GG~lvl~~~~i 229 (322)
T PRK15068 194 FSMGVLYHRRSPLDHLKQLKDQ--LVP-GGELVLETLVI 229 (322)
T ss_pred EECChhhccCCHHHHHHHHHHh--cCC-CcEEEEEEEEe
Confidence 974322 225678899999999 886 88888775543
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-08 Score=89.46 Aligned_cols=106 Identities=11% Similarity=0.137 Sum_probs=84.9
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc-CCcEEEEEcchhhhhhhcCCC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY-ANCIEFVKGDAQKLLMGDYRG 112 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~-~~~Ve~v~gda~~~L~~~~~~ 112 (220)
..+|++||.||. |.|.++-.+.+-.+ -.+++.||+| ++.++.||+.+. +. ..+++++.+|+.+++....++
T Consensus 74 h~~pk~VLiiGg-GdG~tlRevlkh~~--ve~i~~VEID-~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~ 149 (282)
T COG0421 74 HPNPKRVLIIGG-GDGGTLREVLKHLP--VERITMVEID-PAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEK 149 (282)
T ss_pred CCCCCeEEEECC-CccHHHHHHHhcCC--cceEEEEEcC-HHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCc
Confidence 344589999995 48887766665432 5899999999 999999999996 23 378999999999999875668
Q ss_pred ccEEEEcCCCCCc----c-HHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 113 ADFVLIDCNIDID----G-HKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 113 ~D~VfiD~~k~~~----~-y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
||+|++|+.-..+ . -.++++.+.+. |++ +|++|+.
T Consensus 150 fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~--L~~-~Gi~v~q 189 (282)
T COG0421 150 FDVIIVDSTDPVGPAEALFTEEFYEGCRRA--LKE-DGIFVAQ 189 (282)
T ss_pred CCEEEEcCCCCCCcccccCCHHHHHHHHHh--cCC-CcEEEEe
Confidence 9999999976211 1 27899999999 876 8998887
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-09 Score=92.74 Aligned_cols=109 Identities=13% Similarity=0.161 Sum_probs=85.1
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHh-c-cc-CCcEEEEEcchhhhhhhcC-CC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSL-G-RY-ANCIEFVKGDAQKLLMGDY-RG 112 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l-~-g~-~~~Ve~v~gda~~~L~~~~-~~ 112 (220)
..+.++|||.+|| .||+++..++. |+ +|++||.| |..++.|+-|- . ++ +..|+++.||+.++++.+. .+
T Consensus 132 ~~~G~rVLDtC~G-LGYtAi~a~~r----GA~~VitvEkd-p~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 132 VKRGERVLDTCTG-LGYTAIEALER----GAIHVITVEKD-PNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred cccCCEeeeeccC-ccHHHHHHHHc----CCcEEEEEeeC-CCeEEeeccCCCCccccccccEEecccHHHHHhcCCccc
Confidence 4467999999986 99999965543 66 99999999 99999998775 2 44 3358999999999998874 57
Q ss_pred ccEEEEcCCC---CCccH-HHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 113 ADFVLIDCNI---DIDGH-KNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 113 ~D~VfiD~~k---~~~~y-~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
||+|+-|.++ ..+.| .++++++.+. |+| ||-++-+ +-.+|
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~Ri--Lkr-gGrlFHY-vG~Pg 249 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRI--LKR-GGRLFHY-VGNPG 249 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHH--cCc-CCcEEEE-eCCCC
Confidence 9999999987 22566 6788999998 886 7766544 44344
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.9e-09 Score=88.00 Aligned_cols=102 Identities=10% Similarity=0.095 Sum_probs=72.2
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
....-.+++|+||| .|..|..||.. ..+++++|.+ +.+++.||+.+++. .+|++++++..+..|. +.||+|
T Consensus 40 p~~ry~~alEvGCs-~G~lT~~LA~r----Cd~LlavDis-~~Al~~Ar~Rl~~~-~~V~~~~~dvp~~~P~--~~FDLI 110 (201)
T PF05401_consen 40 PRRRYRRALEVGCS-IGVLTERLAPR----CDRLLAVDIS-PRALARARERLAGL-PHVEWIQADVPEFWPE--GRFDLI 110 (201)
T ss_dssp TTSSEEEEEEE--T-TSHHHHHHGGG----EEEEEEEES--HHHHHHHHHHTTT--SSEEEEES-TTT---S--S-EEEE
T ss_pred CccccceeEecCCC-ccHHHHHHHHh----hCceEEEeCC-HHHHHHHHHhcCCC-CCeEEEECcCCCCCCC--CCeeEE
Confidence 34445889999996 99999999864 6899999999 99999999999876 5899999999887764 799999
Q ss_pred EEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 117 LIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 117 fiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++-.--.+ .+...+++.+... |.| ||.+|+=
T Consensus 111 V~SEVlYYL~~~~~L~~~l~~l~~~--L~p-gG~LV~g 145 (201)
T PF05401_consen 111 VLSEVLYYLDDAEDLRAALDRLVAA--LAP-GGHLVFG 145 (201)
T ss_dssp EEES-GGGSSSHHHHHHHHHHHHHT--EEE-EEEEEEE
T ss_pred EEehHhHcCCCHHHHHHHHHHHHHH--hCC-CCEEEEE
Confidence 97643211 2334567777787 887 6666653
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.8e-08 Score=82.83 Aligned_cols=109 Identities=18% Similarity=0.193 Sum_probs=83.4
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
+....++.+|||+||| .|..+..++...+. .++++++|++ +..++.+++++. ...+++++++|+.+.. ...++||
T Consensus 34 ~~~~~~~~~vldiG~G-~G~~~~~~~~~~~~-~~~~~~iD~~-~~~~~~~~~~~~-~~~~i~~~~~d~~~~~-~~~~~~D 108 (223)
T TIGR01934 34 LIGVFKGQKVLDVACG-TGDLAIELAKSAPD-RGKVTGVDFS-SEMLEVAKKKSE-LPLNIEFIQADAEALP-FEDNSFD 108 (223)
T ss_pred HhccCCCCeEEEeCCC-CChhHHHHHHhcCC-CceEEEEECC-HHHHHHHHHHhc-cCCCceEEecchhcCC-CCCCcEE
Confidence 3344578899999997 89999999988753 4799999999 999999999876 3367999999998853 2246899
Q ss_pred EEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 115 FVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 115 ~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+|+..... ...+....++.+.+. |+| ||.++.-+
T Consensus 109 ~i~~~~~~~~~~~~~~~l~~~~~~--L~~-gG~l~~~~ 143 (223)
T TIGR01934 109 AVTIAFGLRNVTDIQKALREMYRV--LKP-GGRLVILE 143 (223)
T ss_pred EEEEeeeeCCcccHHHHHHHHHHH--cCC-CcEEEEEE
Confidence 99875422 115667889999998 876 77666543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.5e-08 Score=96.65 Aligned_cols=117 Identities=16% Similarity=0.085 Sum_probs=86.2
Q ss_pred HHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhh-c
Q 042616 31 FISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMG-D 109 (220)
Q Consensus 31 ~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~-~ 109 (220)
+...+....+..+|||+||| +|..+..|+...+ +++++++|.+ +.+++.|+++......+++++++|+.+ ++. .
T Consensus 409 ~k~~i~d~~~g~rVLDIGCG-TG~ls~~LA~~~P--~~kVtGIDIS-~~MLe~Ararl~~~g~~ie~I~gDa~d-Lp~~f 483 (677)
T PRK06922 409 DKRIILDYIKGDTIVDVGAG-GGVMLDMIEEETE--DKRIYGIDIS-ENVIDTLKKKKQNEGRSWNVIKGDAIN-LSSSF 483 (677)
T ss_pred HHHHHhhhcCCCEEEEeCCC-CCHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHHhhhcCCCeEEEEcchHh-Ccccc
Confidence 33445555678999999997 9999988887654 6899999999 999999999876323568999999987 332 1
Q ss_pred -CCCccEEEEcCCC--------------CCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 110 -YRGADFVLIDCNI--------------DIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 110 -~~~~D~VfiD~~k--------------~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.++||+|+....- ...+...+++.+.+. |+|.|-+++.|.++.
T Consensus 484 edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RV--LKPGGrLII~D~v~~ 541 (677)
T PRK06922 484 EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEV--LKPGGRIIIRDGIMT 541 (677)
T ss_pred CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHH--cCCCcEEEEEeCccC
Confidence 3689999864211 003457888999998 988555566666554
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.5e-08 Score=70.99 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=76.3
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcchhhhhhhcCCCccEEEEcCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQKLLMGDYRGADFVLIDCN 121 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~ 121 (220)
+|+|+||| .|..+..++. . ...+++++|.+ +...+.+++... ....+++++.+|..+..+....++|+|+.+..
T Consensus 1 ~ildig~G-~G~~~~~~~~--~-~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCG-TGALALALAS--G-PGARVTGVDIS-PVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCC-ccHHHHHHhc--C-CCCEEEEEeCC-HHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc
Confidence 48999997 8998888876 2 36899999999 999999885443 33367999999999876422468999999887
Q ss_pred CC--CccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 122 ID--IDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 122 k~--~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
-. ...+..+++.+.+. +++ ||.+++
T Consensus 76 ~~~~~~~~~~~l~~~~~~--l~~-~g~~~~ 102 (107)
T cd02440 76 LHHLVEDLARFLEEARRL--LKP-GGVLVL 102 (107)
T ss_pred eeehhhHHHHHHHHHHHH--cCC-CCEEEE
Confidence 51 13568888998888 876 776664
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.8e-08 Score=88.14 Aligned_cols=114 Identities=14% Similarity=0.050 Sum_probs=82.4
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~ 107 (220)
+.+...+...+.++||||||| +|..++.+++..+ +.+++.+|. |..++.|+++++ ++.++|+++.+|+.+.-
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G-~G~~~~~~~~~~p--~~~~~~~D~--~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~- 212 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGG-IGDISAAMLKHFP--ELDSTILNL--PGAIDLVNENAAEKGVADRMRGIAVDIYKES- 212 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCc-hhHHHHHHHHHCC--CCEEEEEec--HHHHHHHHHHHHhCCccceEEEEecCccCCC-
Confidence 444444455677899999986 9999999998865 579999996 688999999987 77789999999987521
Q ss_pred hcCCCccEEEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 108 GDYRGADFVLIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+++|+|++-.-... .....+++.+.+. |+|.|-+++.|-+.
T Consensus 213 --~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~--L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 213 --YPEADAVLFCRILYSANEQLSTIMCKKAFDA--MRSGGRLLILDMVI 257 (306)
T ss_pred --CCCCCEEEeEhhhhcCChHHHHHHHHHHHHh--cCCCCEEEEEEecc
Confidence 234799876552200 2335689999998 88744444555333
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.5e-08 Score=90.76 Aligned_cols=101 Identities=9% Similarity=-0.028 Sum_probs=80.1
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
...+.++||||||| +|..++.++... +.+|++||.+ +++++.|+++.+++ .+++..+|..+. .++||.|
T Consensus 164 ~l~~g~rVLDIGcG-~G~~a~~la~~~---g~~V~giDlS-~~~l~~A~~~~~~l--~v~~~~~D~~~l----~~~fD~I 232 (383)
T PRK11705 164 QLKPGMRVLDIGCG-WGGLARYAAEHY---GVSVVGVTIS-AEQQKLAQERCAGL--PVEIRLQDYRDL----NGQFDRI 232 (383)
T ss_pred CCCCCCEEEEeCCC-ccHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHHHhccC--eEEEEECchhhc----CCCCCEE
Confidence 44567899999997 999999888752 5799999999 99999999988754 488999998763 3689999
Q ss_pred EEcC-----CCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 117 LIDC-----NIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 117 fiD~-----~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+.-. .. .++..+++.+.+. |+| ||.++...+.
T Consensus 233 vs~~~~ehvg~--~~~~~~l~~i~r~--Lkp-GG~lvl~~i~ 269 (383)
T PRK11705 233 VSVGMFEHVGP--KNYRTYFEVVRRC--LKP-DGLFLLHTIG 269 (383)
T ss_pred EEeCchhhCCh--HHHHHHHHHHHHH--cCC-CcEEEEEEcc
Confidence 7432 22 4678899999999 886 8888776543
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.5e-08 Score=90.77 Aligned_cols=111 Identities=11% Similarity=0.092 Sum_probs=83.3
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~ 107 (220)
.|+..+ .......+|||||| +|..++.||...+ +..+++||++ +.+++.|.+.+. ++ ++|.++++|+.+++.
T Consensus 113 ~~~~~~-~~~~~p~vLEIGcG-sG~~ll~lA~~~P--~~~~iGIEI~-~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~ 186 (390)
T PRK14121 113 NFLDFI-SKNQEKILIEIGFG-SGRHLLYQAKNNP--NKLFIGIEIH-TPSIEQVLKQIELLNL-KNLLIINYDARLLLE 186 (390)
T ss_pred HHHHHh-cCCCCCeEEEEcCc-ccHHHHHHHHhCC--CCCEEEEECC-HHHHHHHHHHHHHcCC-CcEEEEECCHHHhhh
Confidence 444444 34455689999997 9999999998764 5899999999 999999988886 66 579999999988653
Q ss_pred hc-CCCccEEEEcCCCC--Cc-----cHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 108 GD-YRGADFVLIDCNID--ID-----GHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 108 ~~-~~~~D~VfiD~~k~--~~-----~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.+ .+.+|.|++-.+-+ .. .....++.+.+. |+| ||.+..
T Consensus 187 ~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~Rv--Lkp-GG~l~l 233 (390)
T PRK14121 187 LLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRV--LKP-GGTLEL 233 (390)
T ss_pred hCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHH--cCC-CcEEEE
Confidence 33 36899999854320 01 236789999998 887 665433
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.8e-08 Score=82.12 Aligned_cols=116 Identities=14% Similarity=0.067 Sum_probs=87.2
Q ss_pred ChhHHHHHHHHHhh----CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 25 EPDVGEFISALAAG----NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 25 ~p~~~~~L~~La~~----~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
.+...+++...+.. .++.+|||+||| +|+.+..++.. +.+++++|.+ +..++.+++++. +. .++++.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G-~G~~~~~l~~~----~~~v~~iD~s-~~~~~~a~~~~~~~~~-~~~~~~ 98 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCG-GGLLSEPLARL----GANVTGIDAS-EENIEVAKLHAKKDPL-LKIEYR 98 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCC-CCHHHHHHHhc----CCeEEEEeCC-HHHHHHHHHHHHHcCC-CceEEE
Confidence 44456777766664 347899999996 89999888763 4679999999 999999999886 33 369999
Q ss_pred EcchhhhhhhcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 99 KGDAQKLLMGDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 99 ~gda~~~L~~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++|+.+......++||+|+....- ...+....++.+.+. |++ ||++++.
T Consensus 99 ~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~--L~~-gG~l~i~ 148 (224)
T TIGR01983 99 CTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQL--LKP-GGILFFS 148 (224)
T ss_pred eCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHh--cCC-CcEEEEE
Confidence 999988764323689999986422 114667888999998 876 7766654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.3e-08 Score=89.74 Aligned_cols=117 Identities=14% Similarity=0.089 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchh
Q 042616 26 PDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQ 103 (220)
Q Consensus 26 p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~ 103 (220)
+...-++..+ ......+|||+||| +|..++.++...+ ..+|+++|.+ +.+++.|+++++ ++ ..+++.+|..
T Consensus 183 ~gt~lLl~~l-~~~~~g~VLDlGCG-~G~ls~~la~~~p--~~~v~~vDis-~~Al~~A~~nl~~n~l--~~~~~~~D~~ 255 (342)
T PRK09489 183 VGSQLLLSTL-TPHTKGKVLDVGCG-AGVLSAVLARHSP--KIRLTLSDVS-AAALESSRATLAANGL--EGEVFASNVF 255 (342)
T ss_pred HHHHHHHHhc-cccCCCeEEEeccC-cCHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHHHHHcCC--CCEEEEcccc
Confidence 3334444444 33445689999997 9999999997643 4799999999 999999999997 44 3577888876
Q ss_pred hhhhhcCCCccEEEEcCCCCC------ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 104 KLLMGDYRGADFVLIDCNIDI------DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k~~------~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+.+ .++||+|+.+.+-.. ....+.++.+.+. |+|.|-++++-|-+.
T Consensus 256 ~~~---~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~--LkpgG~L~iVan~~l 307 (342)
T PRK09489 256 SDI---KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRH--LNSGGELRIVANAFL 307 (342)
T ss_pred ccc---CCCccEEEECCCccCCccccHHHHHHHHHHHHHh--cCcCCEEEEEEeCCC
Confidence 533 468999999875411 2346778888998 988666666666653
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.7e-08 Score=92.82 Aligned_cols=127 Identities=13% Similarity=0.090 Sum_probs=94.7
Q ss_pred CCCCCChhHHHHHHHHH--hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcE
Q 042616 20 GKRGKEPDVGEFISALA--AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCI 95 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La--~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~V 95 (220)
+...+....+++...++ ...+..+|||+|++ .|-=|..||..+.. .|.|+++|++ +.+++..++|++ |+ .+|
T Consensus 91 G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAA-PGgKTt~la~~l~~-~g~lvA~D~~-~~R~~~L~~nl~r~G~-~nv 166 (470)
T PRK11933 91 GLFYIQEASSMLPVAALFADDNAPQRVLDMAAA-PGSKTTQIAALMNN-QGAIVANEYS-ASRVKVLHANISRCGV-SNV 166 (470)
T ss_pred CcEEEECHHHHHHHHHhccCCCCCCEEEEeCCC-ccHHHHHHHHHcCC-CCEEEEEeCC-HHHHHHHHHHHHHcCC-CeE
Confidence 33344445556655555 55778999999985 89999999988875 6899999999 999999999998 76 579
Q ss_pred EEEEcchhhhhhhcCCCccEEEEcCCCCC-----cc------------------HHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 96 EFVKGDAQKLLMGDYRGADFVLIDCNIDI-----DG------------------HKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 96 e~v~gda~~~L~~~~~~~D~VfiD~~k~~-----~~------------------y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.+.+.|+..+.+.....||.|++|++-.. .+ -.++++.+.+. |+| ||+||.--.
T Consensus 167 ~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~--Lkp-GG~LVYSTC 243 (470)
T PRK11933 167 ALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHA--LKP-GGTLVYSTC 243 (470)
T ss_pred EEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHH--cCC-CcEEEEECC
Confidence 99999998754333467999999998511 00 04556666676 876 998866544
Q ss_pred C
Q 042616 153 L 153 (220)
Q Consensus 153 ~ 153 (220)
.
T Consensus 244 T 244 (470)
T PRK11933 244 T 244 (470)
T ss_pred C
Confidence 3
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.1e-08 Score=87.93 Aligned_cols=102 Identities=10% Similarity=-0.052 Sum_probs=73.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~~~~~D~V 116 (220)
.+..+|||+||| +|++|..||..+.+ .|+|++||.+ +.+.+...+..+.. .+|.++.+|+..- .+...+.+|+|
T Consensus 131 kpG~~VLDLGaG-~G~~t~~lAdiVG~-~G~VyAVD~s-~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV 206 (293)
T PTZ00146 131 KPGSKVLYLGAA-SGTTVSHVSDLVGP-EGVVYAVEFS-HRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVI 206 (293)
T ss_pred CCCCEEEEeCCc-CCHHHHHHHHHhCC-CCEEEEEECc-HHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEE
Confidence 456799999996 99999999998865 6899999999 87554444433322 5789999998642 22224679999
Q ss_pred EEcCCCCCccHH-HHHHHHHhhcCCCCCCEEEEE
Q 042616 117 LIDCNIDIDGHK-NVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fiD~~k~~~~y~-~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|+|... .+.. .++..+... |+| ||.+++
T Consensus 207 ~~Dva~--pdq~~il~~na~r~--LKp-GG~~vI 235 (293)
T PTZ00146 207 FADVAQ--PDQARIVALNAQYF--LKN-GGHFII 235 (293)
T ss_pred EEeCCC--cchHHHHHHHHHHh--ccC-CCEEEE
Confidence 999975 4443 445567777 887 666665
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=6e-08 Score=89.27 Aligned_cols=98 Identities=19% Similarity=0.106 Sum_probs=79.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
..+|||++|| +|..++.+|...+ ..+|+++|.+ +..++.+++|++ ++ ++++++++|+.+++.. ...||+|++
T Consensus 58 ~~~vLDl~aG-sG~~~l~~a~~~~--~~~V~a~Din-~~Av~~a~~N~~~N~~-~~~~v~~~Da~~~l~~-~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSA-SGIRGIRYALETG--VEKVTLNDIN-PDAVELIKKNLELNGL-ENEKVFNKDANALLHE-ERKFDVVDI 131 (382)
T ss_pred CCEEEECCCc-ccHHHHHHHHHCC--CCEEEEEeCC-HHHHHHHHHHHHHhCC-CceEEEhhhHHHHHhh-cCCCCEEEE
Confidence 3589999996 9999999987643 3589999999 999999999997 55 5688999999998864 467999999
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+. +.-.++++.+... +++ ||+|.+-
T Consensus 132 DP~---Gs~~~~l~~al~~--~~~-~gilyvS 157 (382)
T PRK04338 132 DPF---GSPAPFLDSAIRS--VKR-GGLLCVT 157 (382)
T ss_pred CCC---CCcHHHHHHHHHH--hcC-CCEEEEE
Confidence 985 3456788886666 655 7776654
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.5e-08 Score=81.95 Aligned_cols=97 Identities=15% Similarity=0.096 Sum_probs=71.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+..+|||+||| +|..+..|+.. +.+|+++|.+ +.+++.|++++. +..++++++.+|... ..++||+|
T Consensus 62 ~~~~~vLDvGcG-~G~~~~~l~~~----~~~v~~~D~s-~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~fD~v 131 (230)
T PRK07580 62 LTGLRILDAGCG-VGSLSIPLARR----GAKVVASDIS-PQMVEEARERAPEAGLAGNITFEVGDLES----LLGRFDTV 131 (230)
T ss_pred CCCCEEEEEeCC-CCHHHHHHHHc----CCEEEEEECC-HHHHHHHHHHHHhcCCccCcEEEEcCchh----ccCCcCEE
Confidence 567899999997 99999998864 5679999999 999999999986 454689999999432 24689999
Q ss_pred EEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 117 LIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+....- ........++.+.+. + + |++++.
T Consensus 132 ~~~~~l~~~~~~~~~~~l~~l~~~--~-~-~~~~i~ 163 (230)
T PRK07580 132 VCLDVLIHYPQEDAARMLAHLASL--T-R-GSLIFT 163 (230)
T ss_pred EEcchhhcCCHHHHHHHHHHHHhh--c-C-CeEEEE
Confidence 865322 113445667777765 3 3 555554
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.8e-08 Score=85.98 Aligned_cols=106 Identities=21% Similarity=0.157 Sum_probs=82.9
Q ss_pred CCCC-CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEE
Q 042616 20 GKRG-KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIE 96 (220)
Q Consensus 20 ~~~~-~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve 96 (220)
+|.+ +.+...+.+...+...+...||||||| +|..|..|+.. +.+|++||.| +.+++.+++++. +..++++
T Consensus 15 GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G-~G~LT~~Ll~~----~~~V~avEiD-~~li~~l~~~~~~~~~~~~v~ 88 (294)
T PTZ00338 15 GQHILKNPLVLDKIVEKAAIKPTDTVLEIGPG-TGNLTEKLLQL----AKKVIAIEID-PRMVAELKKRFQNSPLASKLE 88 (294)
T ss_pred CccccCCHHHHHHHHHhcCCCCcCEEEEecCc-hHHHHHHHHHh----CCcEEEEECC-HHHHHHHHHHHHhcCCCCcEE
Confidence 5554 678888888887777888999999997 99999998874 5689999999 999999999986 4457899
Q ss_pred EEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHH
Q 042616 97 FVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAK 135 (220)
Q Consensus 97 ~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~ 135 (220)
++++|+.+.- ...||.|+.+.+- +-.-+-.++.+.
T Consensus 89 ii~~Dal~~~---~~~~d~VvaNlPY-~Istpil~~ll~ 123 (294)
T PTZ00338 89 VIEGDALKTE---FPYFDVCVANVPY-QISSPLVFKLLA 123 (294)
T ss_pred EEECCHhhhc---ccccCEEEecCCc-ccCcHHHHHHHh
Confidence 9999998742 3578999977765 112244455553
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.2e-08 Score=90.98 Aligned_cols=119 Identities=17% Similarity=0.191 Sum_probs=94.5
Q ss_pred CChhHHHHHHHHHhh----CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 24 KEPDVGEFISALAAG----NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 24 ~~p~~~~~L~~La~~----~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
..+.+++-|...|.. .+.+++||+.|| +|.+|++||.. ..+|+++|.+ ++.++.|++|++ +. +|++|
T Consensus 273 ~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCG-vG~f~l~lA~~----~~~V~gvEi~-~~aV~~A~~NA~~n~i-~N~~f 345 (432)
T COG2265 273 VNPAVAEKLYETALEWLELAGGERVLDLYCG-VGTFGLPLAKR----VKKVHGVEIS-PEAVEAAQENAAANGI-DNVEF 345 (432)
T ss_pred cCHHHHHHHHHHHHHHHhhcCCCEEEEeccC-CChhhhhhccc----CCEEEEEecC-HHHHHHHHHHHHHcCC-CcEEE
Confidence 456666666665543 456799999997 99999999952 6899999999 999999999998 66 55999
Q ss_pred EEcchhhhhhhcC--CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 98 VKGDAQKLLMGDY--RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 98 v~gda~~~L~~~~--~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
..++++++++... ..+|.||+|.++ .+.-.+.++.+.+. .|+.=+.|.=|.-
T Consensus 346 ~~~~ae~~~~~~~~~~~~d~VvvDPPR-~G~~~~~lk~l~~~---~p~~IvYVSCNP~ 399 (432)
T COG2265 346 IAGDAEEFTPAWWEGYKPDVVVVDPPR-AGADREVLKQLAKL---KPKRIVYVSCNPA 399 (432)
T ss_pred EeCCHHHHhhhccccCCCCEEEECCCC-CCCCHHHHHHHHhc---CCCcEEEEeCCHH
Confidence 9999999998753 578999999998 34556889999886 3656666665543
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.7e-08 Score=86.30 Aligned_cols=107 Identities=12% Similarity=0.155 Sum_probs=81.1
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc-CCcEEEEEcchhhhhhhcCC
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY-ANCIEFVKGDAQKLLMGDYR 111 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~-~~~Ve~v~gda~~~L~~~~~ 111 (220)
...++++||-||.| .|.++-.+.+. + +..+|+.||.| +..++.|++++. ++ ..+++++.+|+..+|.+..+
T Consensus 73 ~~~~p~~VLiiGgG-~G~~~~ell~~-~-~~~~i~~VEiD-~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~ 148 (246)
T PF01564_consen 73 LHPNPKRVLIIGGG-DGGTARELLKH-P-PVESITVVEID-PEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE 148 (246)
T ss_dssp HSSST-EEEEEEST-TSHHHHHHTTS-T-T-SEEEEEES--HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS
T ss_pred cCCCcCceEEEcCC-Chhhhhhhhhc-C-CcceEEEEecC-hHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC
Confidence 34469999999954 77776666542 2 24799999999 999999999986 21 46899999999999987666
Q ss_pred -CccEEEEcCCCCC----ccH-HHHHHHHHhhcCCCCCCEEEEEe
Q 042616 112 -GADFVLIDCNIDI----DGH-KNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 112 -~~D~VfiD~~k~~----~~y-~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.||+|++|...+. ..| .+.++.+++. |+| ||+++..
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~--L~~-~Gv~v~~ 190 (246)
T PF01564_consen 149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRR--LKP-DGVLVLQ 190 (246)
T ss_dssp T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHH--EEE-EEEEEEE
T ss_pred CcccEEEEeCCCCCCCcccccCHHHHHHHHhh--cCC-CcEEEEE
Confidence 8999999987611 122 6889999999 876 9998875
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.2e-08 Score=86.55 Aligned_cols=94 Identities=12% Similarity=0.020 Sum_probs=70.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCC-cEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTG-GRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~-grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
+..+|||+||| +|+.+..|+...+..+ ..++++|++ +.+++.|++.. .+++++++|+.+ +|...++||+|+.
T Consensus 85 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~~~~v~giD~s-~~~l~~A~~~~----~~~~~~~~d~~~-lp~~~~sfD~I~~ 157 (272)
T PRK11088 85 KATALLDIGCG-EGYYTHALADALPEITTMQLFGLDIS-KVAIKYAAKRY----PQVTFCVASSHR-LPFADQSLDAIIR 157 (272)
T ss_pred CCCeEEEECCc-CCHHHHHHHHhcccccCCeEEEECCC-HHHHHHHHHhC----CCCeEEEeeccc-CCCcCCceeEEEE
Confidence 45789999997 9999999998776532 489999999 99999998764 468899999876 3433568999985
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
--.. .. ++.+.+. |+| ||.++.
T Consensus 158 ~~~~--~~----~~e~~rv--Lkp-gG~li~ 179 (272)
T PRK11088 158 IYAP--CK----AEELARV--VKP-GGIVIT 179 (272)
T ss_pred ecCC--CC----HHHHHhh--ccC-CCEEEE
Confidence 4333 33 3556666 776 666655
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.4e-08 Score=85.10 Aligned_cols=120 Identities=9% Similarity=0.008 Sum_probs=93.2
Q ss_pred CCChhHH---HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 23 GKEPDVG---EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 23 ~~~p~~~---~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
.+++.+. +++...+...+.+++|||||| -|..++++|+- .+.+|+++..+ ++..+.+++.++ |++++|++
T Consensus 52 tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCG-WG~l~~~aA~~---y~v~V~GvTlS-~~Q~~~~~~r~~~~gl~~~v~v 126 (283)
T COG2230 52 TLEEAQRAKLDLILEKLGLKPGMTLLDIGCG-WGGLAIYAAEE---YGVTVVGVTLS-EEQLAYAEKRIAARGLEDNVEV 126 (283)
T ss_pred ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCC-hhHHHHHHHHH---cCCEEEEeeCC-HHHHHHHHHHHHHcCCCcccEE
Confidence 3444443 344444556779999999997 89999988875 37899999999 999999999886 88889999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+..|-.++- ++||-|+-=+-- ..++|.++|+.+... |+| ||.++.+.+..
T Consensus 127 ~l~d~rd~~----e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~--L~~-~G~~llh~I~~ 179 (283)
T COG2230 127 RLQDYRDFE----EPFDRIVSVGMFEHVGKENYDDFFKKVYAL--LKP-GGRMLLHSITG 179 (283)
T ss_pred Eeccccccc----cccceeeehhhHHHhCcccHHHHHHHHHhh--cCC-CceEEEEEecC
Confidence 999987753 459999732211 126799999999998 865 99998887775
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.4e-08 Score=85.11 Aligned_cols=119 Identities=13% Similarity=0.056 Sum_probs=92.9
Q ss_pred CCChhHHHHHHHHHhh---CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 23 GKEPDVGEFISALAAG---NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~---~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
.+.|---.+++.-+.. ....+|||+||| -|..+.+||+. |..|++||.+ ++.++.|+.+.. ++ .|++
T Consensus 39 ~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCG-gG~Lse~mAr~----Ga~VtgiD~s-e~~I~~Ak~ha~e~gv--~i~y 110 (243)
T COG2227 39 KINPLRLDYIREVARLRFDLPGLRVLDVGCG-GGILSEPLARL----GASVTGIDAS-EKPIEVAKLHALESGV--NIDY 110 (243)
T ss_pred eeccchhhhhhhhhhcccCCCCCeEEEecCC-ccHhhHHHHHC----CCeeEEecCC-hHHHHHHHHhhhhccc--cccc
Confidence 4556566677776665 577999999997 79999999974 7899999999 999999999886 54 4889
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+.+++++... .++||+|+.=-=. +-.+...+++.+.++ ++| ||+++.-.+.
T Consensus 111 ~~~~~edl~~~-~~~FDvV~cmEVlEHv~dp~~~~~~c~~l--vkP-~G~lf~STin 163 (243)
T COG2227 111 RQATVEDLASA-GGQFDVVTCMEVLEHVPDPESFLRACAKL--VKP-GGILFLSTIN 163 (243)
T ss_pred hhhhHHHHHhc-CCCccEEEEhhHHHccCCHHHHHHHHHHH--cCC-CcEEEEeccc
Confidence 99999997743 4799999832111 225667789999998 887 8888776565
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.5e-08 Score=87.33 Aligned_cols=100 Identities=15% Similarity=0.052 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+..+||||||| +|..++.++...+ +.+++++|.+ +++++.|+++... .+++++.+|+.+ ++...+.||+|+..
T Consensus 113 ~~~~VLDLGcG-tG~~~l~La~~~~--~~~VtgVD~S-~~mL~~A~~k~~~--~~i~~i~gD~e~-lp~~~~sFDvVIs~ 185 (340)
T PLN02490 113 RNLKVVDVGGG-TGFTTLGIVKHVD--AKNVTILDQS-PHQLAKAKQKEPL--KECKIIEGDAED-LPFPTDYADRYVSA 185 (340)
T ss_pred CCCEEEEEecC-CcHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHHhhhc--cCCeEEeccHHh-CCCCCCceeEEEEc
Confidence 45799999997 9999999888653 4799999999 9999999987642 468999999987 33324689999986
Q ss_pred CCCC-CccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 120 CNID-IDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 120 ~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.... -.+....++.+.+. |+| ||.++.
T Consensus 186 ~~L~~~~d~~~~L~e~~rv--LkP-GG~LvI 213 (340)
T PLN02490 186 GSIEYWPDPQRGIKEAYRV--LKI-GGKACL 213 (340)
T ss_pred ChhhhCCCHHHHHHHHHHh--cCC-CcEEEE
Confidence 5331 13556789999999 887 666543
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.3e-08 Score=86.64 Aligned_cols=90 Identities=12% Similarity=0.099 Sum_probs=69.4
Q ss_pred CChhHHHHHHHHH--hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 24 KEPDVGEFISALA--AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 24 ~~p~~~~~L~~La--~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
-.|++-.++..+. ....+.+|||+||| +|..++.||...+ ..+|+++|.+ +.+++.|++|+. ++ .++.++.
T Consensus 92 Pr~dTe~Lve~~l~~~~~~~~~ilDlGTG-SG~iai~la~~~~--~~~V~a~Dis-~~Al~~A~~Na~~~~l-~~~~~~~ 166 (280)
T COG2890 92 PRPDTELLVEAALALLLQLDKRILDLGTG-SGAIAIALAKEGP--DAEVIAVDIS-PDALALARENAERNGL-VRVLVVQ 166 (280)
T ss_pred cCCchHHHHHHHHHhhhhcCCcEEEecCC-hHHHHHHHHhhCc--CCeEEEEECC-HHHHHHHHHHHHHcCC-ccEEEEe
Confidence 4466666766632 22223379999997 9999999998866 3899999999 999999999998 66 6778888
Q ss_pred cchhhhhhhcCCCccEEEEcCC
Q 042616 100 GDAQKLLMGDYRGADFVLIDCN 121 (220)
Q Consensus 100 gda~~~L~~~~~~~D~VfiD~~ 121 (220)
+|..+-+ .++||+|+..++
T Consensus 167 ~dlf~~~---~~~fDlIVsNPP 185 (280)
T COG2890 167 SDLFEPL---RGKFDLIVSNPP 185 (280)
T ss_pred eeccccc---CCceeEEEeCCC
Confidence 8766655 348999986654
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-07 Score=86.93 Aligned_cols=99 Identities=16% Similarity=0.088 Sum_probs=81.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
-+|||+.|| +|..++.++.-.+. ..+|+++|.+ ++.++.+++|++ +. ++++++++|+..++......||+|++|
T Consensus 46 ~~vLD~faG-sG~rgir~a~e~~g-a~~Vv~nD~n-~~Av~~i~~N~~~N~~-~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 46 INIADALSA-SGIRAIRYAHEIEG-VREVFANDIN-PKAVESIKNNVEYNSV-ENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CEEEECCCc-hhHHHHHHHhhCCC-CCEEEEEeCC-HHHHHHHHHHHHHhCC-CcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 489999986 99999988864321 3689999999 999999999998 44 479999999999987655679999999
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+ - +...++++.+.+. ++ +||+|.+-
T Consensus 122 P-f--Gs~~~fld~al~~--~~-~~glL~vT 146 (374)
T TIGR00308 122 P-F--GTPAPFVDSAIQA--SA-ERGLLLVT 146 (374)
T ss_pred C-C--CCcHHHHHHHHHh--cc-cCCEEEEE
Confidence 9 4 5667889999887 75 48776665
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.2e-08 Score=81.64 Aligned_cols=99 Identities=14% Similarity=0.020 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-c------------cCCcEEEEEcchhhhh
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-R------------YANCIEFVKGDAQKLL 106 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g------------~~~~Ve~v~gda~~~L 106 (220)
+..+||++||| .|..++|||.. |-.|++||.+ +.+++.+.+... . -..+|+++++|..+.-
T Consensus 34 ~~~rvLd~GCG-~G~da~~LA~~----G~~V~gvD~S-~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~ 107 (213)
T TIGR03840 34 AGARVFVPLCG-KSLDLAWLAEQ----GHRVLGVELS-EIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT 107 (213)
T ss_pred CCCeEEEeCCC-chhHHHHHHhC----CCeEEEEeCC-HHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence 55799999997 99999999963 7789999999 999987643211 0 1246999999998854
Q ss_pred hhcCCCccEEEEcCC---CCCccHHHHHHHHHhhcCCCCCCEEE
Q 042616 107 MGDYRGADFVLIDCN---IDIDGHKNVFRAAKESVMHGSGAGVI 147 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~---k~~~~y~~~l~~l~~~~~L~~~Ggvi 147 (220)
+...+.||+|+--+- -....-..+++.+.+. |+| ||++
T Consensus 108 ~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~l--Lkp-gG~~ 148 (213)
T TIGR03840 108 AADLGPVDAVYDRAALIALPEEMRQRYAAHLLAL--LPP-GARQ 148 (213)
T ss_pred cccCCCcCEEEechhhccCCHHHHHHHHHHHHHH--cCC-CCeE
Confidence 333356888862111 1114457789999999 887 7753
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.2e-08 Score=80.43 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=86.0
Q ss_pred CCCCChhHHHHHHHHHhh---CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEE
Q 042616 21 KRGKEPDVGEFISALAAG---NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEF 97 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~---~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~ 97 (220)
|...++..+..+-..|.. ...+.|+|+||| +|..++..+..- ..+|+|||+| +++++.+++|.+.+..+|+|
T Consensus 23 QY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~G-TG~La~ga~~lG---a~~V~~vdiD-~~a~ei~r~N~~~l~g~v~f 97 (198)
T COG2263 23 QYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAG-TGILAIGAALLG---ASRVLAVDID-PEALEIARANAEELLGDVEF 97 (198)
T ss_pred ecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCC-cCHHHHHHHhcC---CcEEEEEecC-HHHHHHHHHHHHhhCCceEE
Confidence 445666676666666654 346789999997 999988766432 3699999999 99999999999855578999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+++|+.++ ..++|.++++++-.. +.-...++.+.+. . ..+.-.+|.-.
T Consensus 98 ~~~dv~~~----~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~----s-~vVYsiH~a~~ 148 (198)
T COG2263 98 VVADVSDF----RGKFDTVIMNPPFGSQRRHADRPFLLKALEI----S-DVVYSIHKAGS 148 (198)
T ss_pred EEcchhhc----CCccceEEECCCCccccccCCHHHHHHHHHh----h-heEEEeecccc
Confidence 99999885 367999999987611 1224456666664 2 45555555543
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=84.26 Aligned_cols=120 Identities=17% Similarity=0.084 Sum_probs=84.0
Q ss_pred CChhHHHHHHHHHhh-----CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-cc-CCcEE
Q 042616 24 KEPDVGEFISALAAG-----NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RY-ANCIE 96 (220)
Q Consensus 24 ~~p~~~~~L~~La~~-----~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~-~~~Ve 96 (220)
......++|...++. .++..|||+||| +|..|..|+.++++ +.++++||.+ +++++.|++.+. .. .-+|+
T Consensus 42 ~tr~E~~il~~~~~~ia~~~~~~~~iLELGcG-tG~~t~~Ll~~l~~-~~~~~~iDiS-~~mL~~a~~~l~~~~p~~~v~ 118 (301)
T TIGR03438 42 PTRTEAAILERHADEIAAATGAGCELVELGSG-SSRKTRLLLDALRQ-PARYVPIDIS-ADALKESAAALAADYPQLEVH 118 (301)
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCCeEEecCCC-cchhHHHHHHhhcc-CCeEEEEECC-HHHHHHHHHHHHhhCCCceEE
Confidence 344455555554442 245889999997 99999999998865 6899999999 999999999886 32 24588
Q ss_pred EEEcchhhhhhhcCC----CccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 97 FVKGDAQKLLMGDYR----GADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 97 ~v~gda~~~L~~~~~----~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+++||..+.++.... ..+++|.+..- +..+-...++.+... |+| ||.+++
T Consensus 119 ~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~--L~p-gG~~li 175 (301)
T TIGR03438 119 GICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQL--LGP-GGGLLI 175 (301)
T ss_pred EEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHh--cCC-CCEEEE
Confidence 899998775432111 34466666543 113345678888888 887 666554
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=80.04 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=72.6
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
..+.++|||+||| +|..+..|+.. +.+|+++|.+ +++++.|++++. +..+++++.++|+.+. + ++||+
T Consensus 53 ~~~~~~vLDiGcG-~G~~~~~la~~----~~~v~gvD~s-~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~---~~fD~ 122 (219)
T TIGR02021 53 PLKGKRVLDAGCG-TGLLSIELAKR----GAIVKAVDIS-EQMVQMARNRAQGRDVAGNVEFEVNDLLSL-C---GEFDI 122 (219)
T ss_pred CCCCCEEEEEeCC-CCHHHHHHHHC----CCEEEEEECC-HHHHHHHHHHHHhcCCCCceEEEECChhhC-C---CCcCE
Confidence 3468999999997 99999998863 5699999999 999999999886 4446899999998774 2 68999
Q ss_pred EEE-cCCC--CCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 116 VLI-DCNI--DIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 116 Vfi-D~~k--~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|+. +.-. ...+....++.+.+. ++ +++++.+
T Consensus 123 ii~~~~l~~~~~~~~~~~l~~i~~~--~~-~~~~i~~ 156 (219)
T TIGR02021 123 VVCMDVLIHYPASDMAKALGHLASL--TK-ERVIFTF 156 (219)
T ss_pred EEEhhHHHhCCHHHHHHHHHHHHHH--hC-CCEEEEE
Confidence 975 2211 002345567777765 43 3555554
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.6e-08 Score=83.26 Aligned_cols=99 Identities=17% Similarity=0.211 Sum_probs=71.4
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
..+.+.|+|..|| +|++++.+|.-.+ +.+|+|+|.+ |..++..++|++ ++.++|+.+++|+.++++ ...+|-
T Consensus 99 v~~~e~VlD~faG-IG~f~l~~ak~~~--~~~V~A~d~N-p~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--~~~~dr 172 (200)
T PF02475_consen 99 VKPGEVVLDMFAG-IGPFSLPIAKHGK--AKRVYAVDLN-PDAVEYLKENIRLNKVENRIEVINGDAREFLP--EGKFDR 172 (200)
T ss_dssp --TT-EEEETT-T-TTTTHHHHHHHT---SSEEEEEES--HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-EEE
T ss_pred CCcceEEEEccCC-ccHHHHHHhhhcC--ccEEEEecCC-HHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--ccccCE
Confidence 4567899999986 9999999987432 6789999999 999999999998 788889999999999886 578999
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
|+++-+. .. .++++.+... ++ +||++-
T Consensus 173 vim~lp~--~~-~~fl~~~~~~--~~-~~g~ih 199 (200)
T PF02475_consen 173 VIMNLPE--SS-LEFLDAALSL--LK-EGGIIH 199 (200)
T ss_dssp EEE--TS--SG-GGGHHHHHHH--EE-EEEEEE
T ss_pred EEECChH--HH-HHHHHHHHHH--hc-CCcEEE
Confidence 9999987 33 3577777776 54 477763
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.6e-08 Score=86.06 Aligned_cols=112 Identities=9% Similarity=-0.015 Sum_probs=82.0
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhh
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLL 106 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L 106 (220)
.++|..+.. ++++|||+||| +|..+++.++-. ..+|+++|.| |.+++.|+.|+. ++...++.-..+..+..
T Consensus 153 L~~Le~~~~--~g~~vlDvGcG-SGILaIAa~kLG---A~~v~g~DiD-p~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~ 225 (300)
T COG2264 153 LEALEKLLK--KGKTVLDVGCG-SGILAIAAAKLG---AKKVVGVDID-PQAVEAARENARLNGVELLVQAKGFLLLEVP 225 (300)
T ss_pred HHHHHHhhc--CCCEEEEecCC-hhHHHHHHHHcC---CceEEEecCC-HHHHHHHHHHHHHcCCchhhhcccccchhhc
Confidence 455555554 78999999997 899988777631 3679999999 999999999997 55433445555555544
Q ss_pred hhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 107 MGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
. .++||+|+-.--- +-.......+.+. ++| ||.++.-.++-
T Consensus 226 ~--~~~~DvIVANILA--~vl~~La~~~~~~--lkp-gg~lIlSGIl~ 266 (300)
T COG2264 226 E--NGPFDVIVANILA--EVLVELAPDIKRL--LKP-GGRLILSGILE 266 (300)
T ss_pred c--cCcccEEEehhhH--HHHHHHHHHHHHH--cCC-CceEEEEeehH
Confidence 2 2699999965533 4456677777888 876 89888877774
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-07 Score=80.31 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=86.3
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcC-CCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAAR-QTGGRVVCILSGVIGDIDASKKSLGRYANCIEFV 98 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~-~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v 98 (220)
++.+.++..++++.. ......+|||+||| +|..++.++..+. +...+|++||+| +.+++.|++++ .++.++
T Consensus 31 GqFfTP~~iAr~~~i--~~~~~grVLDlG~G-SG~Lalala~~~~~~~~~~V~aVEID-~~Al~~Ar~n~----~~~~~~ 102 (241)
T PHA03412 31 GAFFTPIGLARDFTI--DACTSGSVVDLCAG-IGGLSFAMVHMMMYAKPREIVCVELN-HTYYKLGKRIV----PEATWI 102 (241)
T ss_pred CccCCCHHHHHHHHH--hccCCCEEEEccCh-HHHHHHHHHHhcccCCCcEEEEEECC-HHHHHHHHhhc----cCCEEE
Confidence 455666777777632 23346799999997 9999999887643 125799999999 99999999886 358899
Q ss_pred EcchhhhhhhcCCCccEEEEcCCCCC-------c------cHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 99 KGDAQKLLMGDYRGADFVLIDCNIDI-------D------GHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 99 ~gda~~~L~~~~~~~D~VfiD~~k~~-------~------~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
++|+.... ....||+|+.+.+-.. . .+..+++.+.++ + ++|++|+=.+++
T Consensus 103 ~~D~~~~~--~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~L--l-~~G~~ILP~~~~ 165 (241)
T PHA03412 103 NADALTTE--FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQI--A-RQGTFIIPQMSA 165 (241)
T ss_pred Ecchhccc--ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHH--c-CCCEEEeCcccc
Confidence 99987643 2468999997765410 1 124466666765 5 458887766665
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.8e-08 Score=80.79 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=70.2
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hh----hc-C
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LM----GD-Y 110 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~----~~-~ 110 (220)
..+..+||||||| +|..|..+++.... .++|++||++ +. ... .+|+++++|+.+. ++ .+ .
T Consensus 49 ~~~~~~VLDlG~G-tG~~t~~l~~~~~~-~~~V~aVDi~-~~---------~~~-~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 49 FKPGMTVVDLGAA-PGGWSQYAVTQIGD-KGRVIACDIL-PM---------DPI-VGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCCEEEEEccc-CCHHHHHHHHHcCC-CceEEEEecc-cc---------cCC-CCcEEEecCCCChHHHHHHHHHhCC
Confidence 3567899999996 99999999987654 6899999999 61 122 3589999998763 22 12 4
Q ss_pred CCccEEEEcCCCCC-c----c-------HHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 111 RGADFVLIDCNIDI-D----G-------HKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 111 ~~~D~VfiD~~k~~-~----~-------y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++||+|+.|..... + + ...+++.+.+. |+| ||.+++.
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~--Lkp-GG~~vi~ 164 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDV--LAP-GGSFVVK 164 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHH--cCC-CCEEEEE
Confidence 68999999873200 0 1 14578888888 886 7877775
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-07 Score=85.64 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=94.8
Q ss_pred ChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcch
Q 042616 25 EPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDA 102 (220)
Q Consensus 25 ~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda 102 (220)
+....|-...+-.....+.|||.-+| +|++|+.+|...+. +|+++|.| |..++..++|++ ++.+.|+.++||+
T Consensus 173 prl~~ER~Rva~~v~~GE~V~DmFAG-VGpfsi~~Ak~g~~---~V~A~diN-P~A~~~L~eNi~LN~v~~~v~~i~gD~ 247 (341)
T COG2520 173 PRLSTERARVAELVKEGETVLDMFAG-VGPFSIPIAKKGRP---KVYAIDIN-PDAVEYLKENIRLNKVEGRVEPILGDA 247 (341)
T ss_pred CCchHHHHHHHhhhcCCCEEEEccCC-cccchhhhhhcCCc---eEEEEecC-HHHHHHHHHHHHhcCccceeeEEeccH
Confidence 33344444444445558999999997 99999999987554 39999999 999999999998 7777799999999
Q ss_pred hhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 103 QKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.++.+.+ +.+|-|++..++ . -.+++..+... +++ ||+|..+....
T Consensus 248 rev~~~~-~~aDrIim~~p~--~-a~~fl~~A~~~--~k~-~g~iHyy~~~~ 292 (341)
T COG2520 248 REVAPEL-GVADRIIMGLPK--S-AHEFLPLALEL--LKD-GGIIHYYEFVP 292 (341)
T ss_pred HHhhhcc-ccCCEEEeCCCC--c-chhhHHHHHHH--hhc-CcEEEEEeccc
Confidence 9998763 789999999988 3 24566777777 665 99999987775
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-07 Score=88.63 Aligned_cols=109 Identities=12% Similarity=0.024 Sum_probs=78.8
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh-hhhcCCCc
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL-LMGDYRGA 113 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~-L~~~~~~~ 113 (220)
+....+.++||||||| +|..|..|+.. .++|++||.+ +++++.+++.. +...+++++++|+.+. ++...++|
T Consensus 32 ~l~~~~~~~vLDlGcG-~G~~~~~la~~----~~~v~giD~s-~~~l~~a~~~~-~~~~~i~~~~~d~~~~~~~~~~~~f 104 (475)
T PLN02336 32 LLPPYEGKSVLELGAG-IGRFTGELAKK----AGQVIALDFI-ESVIKKNESIN-GHYKNVKFMCADVTSPDLNISDGSV 104 (475)
T ss_pred hcCccCCCEEEEeCCC-cCHHHHHHHhh----CCEEEEEeCC-HHHHHHHHHHh-ccCCceEEEEecccccccCCCCCCE
Confidence 3344456799999997 99999999874 5799999999 99998876633 3336799999998642 33224689
Q ss_pred cEEEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEE-ecCC
Q 042616 114 DFVLIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVG-YNAL 153 (220)
Q Consensus 114 D~VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~-dNv~ 153 (220)
|+|+....-.. ......++.+.+. |+| ||++++ |+++
T Consensus 105 D~I~~~~~l~~l~~~~~~~~l~~~~r~--Lk~-gG~l~~~d~~~ 145 (475)
T PLN02336 105 DLIFSNWLLMYLSDKEVENLAERMVKW--LKV-GGYIFFRESCF 145 (475)
T ss_pred EEEehhhhHHhCCHHHHHHHHHHHHHh--cCC-CeEEEEEeccC
Confidence 99998764310 2246788889988 876 776655 4444
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-07 Score=79.87 Aligned_cols=96 Identities=15% Similarity=0.049 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH--hcc-----------cCCcEEEEEcchhhhh
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKS--LGR-----------YANCIEFVKGDAQKLL 106 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~--l~g-----------~~~~Ve~v~gda~~~L 106 (220)
+..+||++||| .|..++|||.- |-.|++||++ +.+++.+.+. +.. ...+|++.++|..+..
T Consensus 37 ~~~rvL~~gCG-~G~da~~LA~~----G~~V~avD~s-~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 37 AGSRVLVPLCG-KSLDMLWLAEQ----GHEVLGVELS-ELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCeEEEeCCC-ChHhHHHHHhC----CCeEEEEccC-HHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC
Confidence 45799999997 99999999962 7799999999 9999876431 110 1357999999998875
Q ss_pred hhcCCCccEEE-----EcCCCCCccHHHHHHHHHhhcCCCCCCEE
Q 042616 107 MGDYRGADFVL-----IDCNIDIDGHKNVFRAAKESVMHGSGAGV 146 (220)
Q Consensus 107 ~~~~~~~D~Vf-----iD~~k~~~~y~~~l~~l~~~~~L~~~Ggv 146 (220)
+.....||+|+ +-.+. ..-.++++.+.+. |+| ||+
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~~--~~R~~~~~~l~~l--L~p-gG~ 150 (218)
T PRK13255 111 AADLADVDAVYDRAALIALPE--EMRERYVQQLAAL--LPA-GCR 150 (218)
T ss_pred cccCCCeeEEEehHhHhhCCH--HHHHHHHHHHHHH--cCC-CCe
Confidence 44346789998 32333 4567889999998 887 653
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-07 Score=81.53 Aligned_cols=94 Identities=15% Similarity=0.073 Sum_probs=77.4
Q ss_pred cCCC-CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEE
Q 042616 19 MGKR-GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEF 97 (220)
Q Consensus 19 ~~~~-~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~ 97 (220)
.+|. .+.+...+.+...+...+.+.||||||| +|..|..|+.. +.+|++||.| +.+++.+++++... +++++
T Consensus 7 ~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G-~G~lt~~L~~~----~~~v~~vEid-~~~~~~l~~~~~~~-~~v~i 79 (258)
T PRK14896 7 LGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPG-KGALTDELAKR----AKKVYAIELD-PRLAEFLRDDEIAA-GNVEI 79 (258)
T ss_pred CCccccCCHHHHHHHHHhcCCCCcCeEEEEeCc-cCHHHHHHHHh----CCEEEEEECC-HHHHHHHHHHhccC-CCEEE
Confidence 3555 4788899988888887888999999997 99999999875 4699999999 99999999988653 68999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCC
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
+++|+.++- ...||.|+-..+-
T Consensus 80 i~~D~~~~~---~~~~d~Vv~NlPy 101 (258)
T PRK14896 80 IEGDALKVD---LPEFNKVVSNLPY 101 (258)
T ss_pred EEeccccCC---chhceEEEEcCCc
Confidence 999998742 2458988866554
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.1e-08 Score=85.94 Aligned_cols=115 Identities=13% Similarity=0.072 Sum_probs=80.7
Q ss_pred ChhHHHHHHHHHhh-CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcc
Q 042616 25 EPDVGEFISALAAG-NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGD 101 (220)
Q Consensus 25 ~p~~~~~L~~La~~-~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gd 101 (220)
.|-+.-.|..|... .+.++|||+||| +|..++..++. . .++|+++|.| |..++.|++|++ ++.+++++. .
T Consensus 145 H~TT~lcl~~l~~~~~~g~~vLDvG~G-SGILaiaA~kl-G--A~~v~a~DiD-p~Av~~a~~N~~~N~~~~~~~v~--~ 217 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVKPGKRVLDVGCG-SGILAIAAAKL-G--AKKVVAIDID-PLAVEAARENAELNGVEDRIEVS--L 217 (295)
T ss_dssp CHHHHHHHHHHHHHSSTTSEEEEES-T-TSHHHHHHHHT-T--BSEEEEEESS-CHHHHHHHHHHHHTT-TTCEEES--C
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCCc-HHHHHHHHHHc-C--CCeEEEecCC-HHHHHHHHHHHHHcCCCeeEEEE--E
Confidence 34455555555554 446899999997 89988866653 1 3689999999 999999999997 777777663 2
Q ss_pred hhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
..+.. ..+||+|+-.--. .-.......+.+. |+| ||.++.-.++.
T Consensus 218 ~~~~~---~~~~dlvvANI~~--~vL~~l~~~~~~~--l~~-~G~lIlSGIl~ 262 (295)
T PF06325_consen 218 SEDLV---EGKFDLVVANILA--DVLLELAPDIASL--LKP-GGYLILSGILE 262 (295)
T ss_dssp TSCTC---CS-EEEEEEES-H--HHHHHHHHHCHHH--EEE-EEEEEEEEEEG
T ss_pred ecccc---cccCCEEEECCCH--HHHHHHHHHHHHh--hCC-CCEEEEccccH
Confidence 22322 3789999976665 5566777777777 765 89988876664
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-07 Score=78.85 Aligned_cols=111 Identities=12% Similarity=0.042 Sum_probs=79.2
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcc
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGD 101 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gd 101 (220)
..|...+++.+ +...++.++||+||| .|-.+++||+- |=.|+++|.+ +..++.+++..+ ++ .|+..+.|
T Consensus 15 ~~~~hs~v~~a-~~~~~~g~~LDlgcG-~GRNalyLA~~----G~~VtAvD~s-~~al~~l~~~a~~~~l--~i~~~~~D 85 (192)
T PF03848_consen 15 LTPTHSEVLEA-VPLLKPGKALDLGCG-EGRNALYLASQ----GFDVTAVDIS-PVALEKLQRLAEEEGL--DIRTRVAD 85 (192)
T ss_dssp B----HHHHHH-CTTS-SSEEEEES-T-TSHHHHHHHHT----T-EEEEEESS-HHHHHHHHHHHHHTT---TEEEEE-B
T ss_pred CCCCcHHHHHH-HhhcCCCcEEEcCCC-CcHHHHHHHHC----CCeEEEEECC-HHHHHHHHHHHhhcCc--eeEEEEec
Confidence 34445555554 466788999999997 99999999984 7789999999 999998887765 55 39999999
Q ss_pred hhhhhhhcCCCccEEEEc-----CCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 102 AQKLLMGDYRGADFVLID-----CNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD-----~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..+.-. ...||+|+.. .++ +..+.+++.++.. ++| ||+.+.-
T Consensus 86 l~~~~~--~~~yD~I~st~v~~fL~~--~~~~~i~~~m~~~--~~p-GG~~li~ 132 (192)
T PF03848_consen 86 LNDFDF--PEEYDFIVSTVVFMFLQR--ELRPQIIENMKAA--TKP-GGYNLIV 132 (192)
T ss_dssp GCCBS---TTTEEEEEEESSGGGS-G--GGHHHHHHHHHHT--EEE-EEEEEEE
T ss_pred chhccc--cCCcCEEEEEEEeccCCH--HHHHHHHHHHHhh--cCC-cEEEEEE
Confidence 876532 4689999753 233 5678899999998 876 9997763
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.3e-08 Score=88.59 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=71.4
Q ss_pred CCChhHHHHHHHHHhhC---CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 23 GKEPDVGEFISALAAGN---NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~---~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
.+.+.+.+-|...+..+ .+..+||+.|| +|.+|+.||.. ..+|++||.+ +++++.|++|++ ++ ++++|
T Consensus 176 QvN~~~~~~l~~~~~~~l~~~~~~vlDlycG-~G~fsl~la~~----~~~V~gvE~~-~~av~~A~~Na~~N~i-~n~~f 248 (352)
T PF05958_consen 176 QVNPEQNEKLYEQALEWLDLSKGDVLDLYCG-VGTFSLPLAKK----AKKVIGVEIV-EEAVEDARENAKLNGI-DNVEF 248 (352)
T ss_dssp -SBHHHHHHHHHHHHHHCTT-TTEEEEES-T-TTCCHHHHHCC----SSEEEEEES--HHHHHHHHHHHHHTT---SEEE
T ss_pred cCcHHHHHHHHHHHHHHhhcCCCcEEEEeec-CCHHHHHHHhh----CCeEEEeeCC-HHHHHHHHHHHHHcCC-CcceE
Confidence 45566666665555422 23479999997 99999999874 5799999999 999999999998 66 78999
Q ss_pred EEcchhhhhhhc---------------CCCccEEEEcCCCCCccHHHHHHHHHh
Q 042616 98 VKGDAQKLLMGD---------------YRGADFVLIDCNIDIDGHKNVFRAAKE 136 (220)
Q Consensus 98 v~gda~~~L~~~---------------~~~~D~VfiD~~k~~~~y~~~l~~l~~ 136 (220)
+.+++.++...+ ...+|.|++|+++ .+.....++.+.+
T Consensus 249 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR-~G~~~~~~~~~~~ 301 (352)
T PF05958_consen 249 IRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPR-AGLDEKVIELIKK 301 (352)
T ss_dssp EE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---T-T-SCHHHHHHHHH
T ss_pred EEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCC-CCchHHHHHHHhc
Confidence 999988764321 1268999999998 3555667777654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.2e-07 Score=82.39 Aligned_cols=104 Identities=9% Similarity=-0.073 Sum_probs=74.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+.++||||||| +|+.+..++... ..+|++||++ +.++..++..-+ +...++.+..++..+. +. ...||+|
T Consensus 120 ~~g~~VLDvGCG-~G~~~~~~~~~g---~~~v~GiDpS-~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p~-~~~FD~V 192 (314)
T TIGR00452 120 LKGRTILDVGCG-SGYHMWRMLGHG---AKSLVGIDPT-VLFLCQFEAVRKLLDNDKRAILEPLGIEQL-HE-LYAFDTV 192 (314)
T ss_pred CCCCEEEEeccC-CcHHHHHHHHcC---CCEEEEEcCC-HHHHHHHHHHHHHhccCCCeEEEECCHHHC-CC-CCCcCEE
Confidence 556899999997 999988887541 3589999999 888765443222 2235788999988774 33 3589999
Q ss_pred EEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 117 LIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 117 fiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|.-+-- ...+..+.++.+.+. |+| ||.+|....
T Consensus 193 ~s~gvL~H~~dp~~~L~el~r~--Lkp-GG~Lvletl 226 (314)
T TIGR00452 193 FSMGVLYHRKSPLEHLKQLKHQ--LVI-KGELVLETL 226 (314)
T ss_pred EEcchhhccCCHHHHHHHHHHh--cCC-CCEEEEEEE
Confidence 976532 125667899999999 887 777776533
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.7e-07 Score=76.22 Aligned_cols=105 Identities=15% Similarity=0.097 Sum_probs=72.3
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--h-
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--L- 106 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L- 106 (220)
++...+....+.++|||+||| +|..+..++..... .++|+++|++ +.+ .. .+++++++|+.+. +
T Consensus 22 ~~~~~~~~i~~g~~VLDiG~G-tG~~~~~l~~~~~~-~~~v~~vDis-~~~---------~~-~~i~~~~~d~~~~~~~~ 88 (188)
T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAA-PGGWSQVAVEQVGG-KGRVIAVDLQ-PMK---------PI-ENVDFIRGDFTDEEVLN 88 (188)
T ss_pred HHHHHhcccCCCCEEEEecCC-CCHHHHHHHHHhCC-CceEEEEecc-ccc---------cC-CCceEEEeeCCChhHHH
Confidence 444555555778999999997 89999888876644 6799999999 754 11 4578888887542 1
Q ss_pred ---hhc-CCCccEEEEcCCCC-----Ccc-------HHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 107 ---MGD-YRGADFVLIDCNID-----IDG-------HKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 107 ---~~~-~~~~D~VfiD~~k~-----~~~-------y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
... .++||+|+.|+..+ ..+ ....++.+.+. |+| ||.+++.
T Consensus 89 ~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~lvi~ 145 (188)
T TIGR00438 89 KIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEV--LKP-KGNFVVK 145 (188)
T ss_pred HHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHH--ccC-CCEEEEE
Confidence 111 35799999986320 011 24678888888 876 7777764
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3e-07 Score=80.76 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=72.6
Q ss_pred CCChhHHHHHHHHHhh------CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCc
Q 042616 23 GKEPDVGEFISALAAG------NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANC 94 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~------~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~ 94 (220)
+-.|++-++....... .+...|+|+||| +|..++.|+..+++ +++++||.+ +.++..|.+|.+ ++.++
T Consensus 125 IPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtG-SGaIslsll~~L~~--~~v~AiD~S-~~Ai~La~eN~qr~~l~g~ 200 (328)
T KOG2904|consen 125 IPRPETEEWVEAVIDALNNSEHSKHTHILDLGTG-SGAISLSLLHGLPQ--CTVTAIDVS-KAAIKLAKENAQRLKLSGR 200 (328)
T ss_pred ecCccHHHHHHHHHHHHhhhhhcccceEEEecCC-ccHHHHHHHhcCCC--ceEEEEecc-HHHHHHHHHHHHHHhhcCc
Confidence 4557777776655443 334579999997 99999999999884 999999999 999999999998 77889
Q ss_pred EEEE----EcchhhhhhhcCCCccEEEEc
Q 042616 95 IEFV----KGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 95 Ve~v----~gda~~~L~~~~~~~D~VfiD 119 (220)
++++ .+|+.+-.+.+.+++|+++-+
T Consensus 201 i~v~~~~me~d~~~~~~l~~~~~dllvsN 229 (328)
T KOG2904|consen 201 IEVIHNIMESDASDEHPLLEGKIDLLVSN 229 (328)
T ss_pred eEEEecccccccccccccccCceeEEecC
Confidence 9988 456655444445788888743
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-08 Score=75.32 Aligned_cols=96 Identities=14% Similarity=0.133 Sum_probs=59.7
Q ss_pred EEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhccc-CCcEEEEEcchhhhhhhcC-CCccEEEEcCCC
Q 042616 45 VMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRY-ANCIEFVKGDAQKLLMGDY-RGADFVLIDCNI 122 (220)
Q Consensus 45 LEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~-~~~Ve~v~gda~~~L~~~~-~~~D~VfiD~~k 122 (220)
|||||| +|..+..|+...+ ..+++++|++ +.+++.|++.+... ..+++.+..+..+...... ++||+|+.-.--
T Consensus 1 LdiGcG-~G~~~~~l~~~~~--~~~~~~~D~s-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCG-TGRLLRALLEELP--DARYTGVDIS-PSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTT-TS-TTTTHHHHC---EEEEEEEESS-SSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCcc-ChHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhH
Confidence 799997 9999999998873 6999999999 99999999888732 2345555555444332222 589999866443
Q ss_pred -CCccHHHHHHHHHhhcCCCCCCEEE
Q 042616 123 -DIDGHKNVFRAAKESVMHGSGAGVI 147 (220)
Q Consensus 123 -~~~~y~~~l~~l~~~~~L~~~Ggvi 147 (220)
.-.+...+++.+.+. |+| ||++
T Consensus 77 ~~l~~~~~~l~~~~~~--L~p-gG~l 99 (99)
T PF08242_consen 77 HHLEDIEAVLRNIYRL--LKP-GGIL 99 (99)
T ss_dssp S--S-HHHHHHHHTTT---TS-S-EE
T ss_pred hhhhhHHHHHHHHHHH--cCC-CCCC
Confidence 114667889999988 886 8875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-07 Score=78.59 Aligned_cols=108 Identities=18% Similarity=0.119 Sum_probs=82.7
Q ss_pred ChhH-HHHHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-cc----------
Q 042616 25 EPDV-GEFISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RY---------- 91 (220)
Q Consensus 25 ~p~~-~~~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~---------- 91 (220)
.|.. +..|..|-. ..+.-+.|++|+| +||.|.++|.-+..+++-.+.||.- ++.++.+++|++ ..
T Consensus 65 Ap~mha~~le~L~~~L~pG~s~LdvGsG-SGYLt~~~~~mvg~~g~~~~GIEh~-~eLVe~Sk~nl~k~i~~~e~~~~~~ 142 (237)
T KOG1661|consen 65 APHMHATALEYLDDHLQPGASFLDVGSG-SGYLTACFARMVGATGGNVHGIEHI-PELVEYSKKNLDKDITTSESSSKLK 142 (237)
T ss_pred chHHHHHHHHHHHHhhccCcceeecCCC-ccHHHHHHHHHhcCCCccccchhhh-HHHHHHHHHHHHhhccCchhhhhhc
Confidence 3444 455555532 5677889999986 9999999997777767777999999 999999999996 21
Q ss_pred CCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHh
Q 042616 92 ANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKE 136 (220)
Q Consensus 92 ~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~ 136 (220)
...+.+++||....-+. ..+||.|++.+.. .....+++++|++
T Consensus 143 ~~~l~ivvGDgr~g~~e-~a~YDaIhvGAaa-~~~pq~l~dqL~~ 185 (237)
T KOG1661|consen 143 RGELSIVVGDGRKGYAE-QAPYDAIHVGAAA-SELPQELLDQLKP 185 (237)
T ss_pred cCceEEEeCCccccCCc-cCCcceEEEccCc-cccHHHHHHhhcc
Confidence 24589999999987655 6899999999876 3455666666553
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.6e-07 Score=77.40 Aligned_cols=127 Identities=12% Similarity=0.036 Sum_probs=75.0
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCC--CCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQ--TGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~--~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~ 99 (220)
.+..|...-.++.|.-..+|+.|+|+|+ .-|-|++++|.-+.. ..++|++||+| ..........-..+.++|++++
T Consensus 14 i~q~P~Dm~~~qeli~~~kPd~IIE~Gi-~~GGSli~~A~ml~~~~~~~~VigiDId-ir~~~~~a~e~hp~~~rI~~i~ 91 (206)
T PF04989_consen 14 IIQYPQDMVAYQELIWELKPDLIIETGI-AHGGSLIFWASMLELLGGKGKVIGIDID-IRPHNRKAIESHPMSPRITFIQ 91 (206)
T ss_dssp ESS-HHHHHHHHHHHHHH--SEEEEE---TTSHHHHHHHHHHHHTT---EEEEEES--GTT--S-GGGG----TTEEEEE
T ss_pred hhcCHHHHHHHHHHHHHhCCCeEEEEec-CCCchHHHHHHHHHHhCCCceEEEEeCC-cchhchHHHhhccccCceEEEE
Confidence 4567888888888888999999999998 478888887753321 26899999998 5444322211124568999999
Q ss_pred cchhh--hhhhc-----CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 100 GDAQK--LLMGD-----YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 100 gda~~--~L~~~-----~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
||..+ .+... .....+|+.|+++........|+.+.++ +. +|+.+|+-|..
T Consensus 92 Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~pl--v~-~G~Y~IVeDt~ 149 (206)
T PF04989_consen 92 GDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPL--VS-PGSYLIVEDTI 149 (206)
T ss_dssp S-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT-----TT-EEEETSHH
T ss_pred CCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCcc--CC-CCCEEEEEecc
Confidence 99753 23222 2456799999997556668888888887 75 59998877665
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-07 Score=79.41 Aligned_cols=111 Identities=10% Similarity=0.064 Sum_probs=74.6
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCC--CcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQT--GGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~--~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~ 107 (220)
+++..+....++.+|||+||| +|..+..|+..+++. +.+|+++|++ +++++.|++.... .++++.++++.++ +
T Consensus 50 ~~~~~~l~~~~~~~iLDlGcG-~G~~~~~L~~~~~~~g~~~~v~gvD~s-~~~l~~a~~~~~~--~~~~~~~~~~~~l-~ 124 (232)
T PRK06202 50 RLLRPALSADRPLTLLDIGCG-GGDLAIDLARWARRDGLRLEVTAIDPD-PRAVAFARANPRR--PGVTFRQAVSDEL-V 124 (232)
T ss_pred HHHHHhcCCCCCcEEEEeccC-CCHHHHHHHHHHHhCCCCcEEEEEcCC-HHHHHHHHhcccc--CCCeEEEEecccc-c
Confidence 344333344567899999997 999999998765431 3599999999 9999999987652 2466666665443 2
Q ss_pred hcCCCccEEEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 108 GDYRGADFVLIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
...++||+|+.-..-+. .+....++.+.+. + +|++++.
T Consensus 125 ~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~--~--~~~~~i~ 165 (232)
T PRK06202 125 AEGERFDVVTSNHFLHHLDDAEVVRLLADSAAL--A--RRLVLHN 165 (232)
T ss_pred ccCCCccEEEECCeeecCChHHHHHHHHHHHHh--c--CeeEEEe
Confidence 22468999998754311 1234678888876 4 2544444
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.5e-07 Score=77.02 Aligned_cols=98 Identities=10% Similarity=0.034 Sum_probs=74.1
Q ss_pred HHHHHHHhh-CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhh
Q 042616 30 EFISALAAG-NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 30 ~~L~~La~~-~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~ 108 (220)
+++..+... .++.+|||+||| +|..+..|+... +++|++||++ +++++.|++. .+++++|+++ +|.
T Consensus 40 ~~~~~l~~~~~~~~~VLDlGcG-tG~~~~~l~~~~---~~~v~gvD~S-~~Ml~~a~~~-------~~~~~~d~~~-lp~ 106 (226)
T PRK05785 40 ELVKTILKYCGRPKKVLDVAAG-KGELSYHFKKVF---KYYVVALDYA-ENMLKMNLVA-------DDKVVGSFEA-LPF 106 (226)
T ss_pred HHHHHHHHhcCCCCeEEEEcCC-CCHHHHHHHHhc---CCEEEEECCC-HHHHHHHHhc-------cceEEechhh-CCC
Confidence 344444432 347899999997 999999988753 4799999999 9999998864 2457889887 454
Q ss_pred cCCCccEEEEcCCCC-CccHHHHHHHHHhhcCCCC
Q 042616 109 DYRGADFVLIDCNID-IDGHKNVFRAAKESVMHGS 142 (220)
Q Consensus 109 ~~~~~D~VfiD~~k~-~~~y~~~l~~l~~~~~L~~ 142 (220)
..++||+|+.-...+ -.+....++.+.+. |+|
T Consensus 107 ~d~sfD~v~~~~~l~~~~d~~~~l~e~~Rv--Lkp 139 (226)
T PRK05785 107 RDKSFDVVMSSFALHASDNIEKVIAEFTRV--SRK 139 (226)
T ss_pred CCCCEEEEEecChhhccCCHHHHHHHHHHH--hcC
Confidence 457899999766442 14667889999998 887
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-06 Score=76.02 Aligned_cols=104 Identities=11% Similarity=0.025 Sum_probs=77.0
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD 101 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd 101 (220)
..+.+...+.+...+...+..+||||||| +|..|..|+.. +.+|+++|.| +.+++.+++++.. ++++++++|
T Consensus 24 fl~~~~i~~~i~~~l~~~~~~~VLEiG~G-~G~lt~~L~~~----~~~v~avE~d-~~~~~~~~~~~~~--~~v~~i~~D 95 (272)
T PRK00274 24 FLIDENILDKIVDAAGPQPGDNVLEIGPG-LGALTEPLLER----AAKVTAVEID-RDLAPILAETFAE--DNLTIIEGD 95 (272)
T ss_pred cCCCHHHHHHHHHhcCCCCcCeEEEeCCC-ccHHHHHHHHh----CCcEEEEECC-HHHHHHHHHhhcc--CceEEEECh
Confidence 35677777777777777788899999997 99999999886 3599999999 9999999988754 689999999
Q ss_pred hhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHh
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKE 136 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~ 136 (220)
+.++-.. .-.+|.|+-..+- .....++..+..
T Consensus 96 ~~~~~~~-~~~~~~vv~NlPY--~iss~ii~~~l~ 127 (272)
T PRK00274 96 ALKVDLS-ELQPLKVVANLPY--NITTPLLFHLLE 127 (272)
T ss_pred hhcCCHH-HcCcceEEEeCCc--cchHHHHHHHHh
Confidence 9875211 1114667655443 444555555554
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.6e-07 Score=78.98 Aligned_cols=106 Identities=11% Similarity=0.144 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.|++|+=||+|..-.+++.|+..... +.+|++||.| +++.+.|++.++ +++.+++|+++|+.+.-.. ...||.|
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~-~~~v~~iD~d-~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-l~~~DvV 196 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGP-GARVHNIDID-PEANELARRLVASDLGLSKRMSFITADVLDVTYD-LKEYDVV 196 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT---EEEEEESS-HHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----SEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCC-CCeEEEEeCC-HHHHHHHHHHHhhcccccCCeEEEecchhccccc-cccCCEE
Confidence 35799999998888999999965433 6789999999 999999999886 7788999999999875422 4689999
Q ss_pred EEcCCCCCc----cHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 117 LIDCNIDID----GHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 117 fiD~~k~~~----~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|+-+-. + .=.++++.+.+. .+ +|++|+.-...
T Consensus 197 ~lAalV--g~~~e~K~~Il~~l~~~--m~-~ga~l~~Rsa~ 232 (276)
T PF03059_consen 197 FLAALV--GMDAEPKEEILEHLAKH--MA-PGARLVVRSAH 232 (276)
T ss_dssp EE-TT---S----SHHHHHHHHHHH--S--TTSEEEEEE--
T ss_pred EEhhhc--ccccchHHHHHHHHHhh--CC-CCcEEEEecch
Confidence 999877 5 778999999998 65 59999987443
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.8e-07 Score=78.47 Aligned_cols=117 Identities=9% Similarity=0.079 Sum_probs=89.0
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcc
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGD 101 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gd 101 (220)
+....--||..|-..... +|||+||| .|+.++.||+..| ..+|+.+|.| ..+++.||+|++ ++ ++.+++..|
T Consensus 143 lD~GS~lLl~~l~~~~~~-~vlDlGCG-~Gvlg~~la~~~p--~~~vtmvDvn-~~Av~~ar~Nl~~N~~-~~~~v~~s~ 216 (300)
T COG2813 143 LDKGSRLLLETLPPDLGG-KVLDLGCG-YGVLGLVLAKKSP--QAKLTLVDVN-ARAVESARKNLAANGV-ENTEVWASN 216 (300)
T ss_pred cChHHHHHHHhCCccCCC-cEEEeCCC-ccHHHHHHHHhCC--CCeEEEEecC-HHHHHHHHHhHHHcCC-CccEEEEec
Confidence 444455566666555454 89999997 9999999999765 5899999999 999999999998 44 344888888
Q ss_pred hhhhhhhcCCCccEEEEcCCCCCc--cH----HHHHHHHHhhcCCCCCCEEEEEec
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDID--GH----KNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~~--~y----~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
..+-. .+.||+|+..++-+.+ -- .+.++.+.++ |++.|-+-++-|
T Consensus 217 ~~~~v---~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~--L~~gGeL~iVan 267 (300)
T COG2813 217 LYEPV---EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARH--LKPGGELWIVAN 267 (300)
T ss_pred ccccc---cccccEEEeCCCccCCcchhHHHHHHHHHHHHHh--hccCCEEEEEEc
Confidence 87755 3489999999887332 11 3678888999 988666656655
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-06 Score=77.19 Aligned_cols=76 Identities=12% Similarity=0.183 Sum_probs=61.8
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
......+|||+||| +|..++.++...+ +.+|++||.+ +.+++.|++++ .+++++++|+.+... ...||+|
T Consensus 61 ~~~~~grVLDLGcG-sGilsl~la~r~~--~~~V~gVDis-p~al~~Ar~n~----~~v~~v~~D~~e~~~--~~kFDlI 130 (279)
T PHA03411 61 DAHCTGKVLDLCAG-IGRLSFCMLHRCK--PEKIVCVELN-PEFARIGKRLL----PEAEWITSDVFEFES--NEKFDVV 130 (279)
T ss_pred ccccCCeEEEcCCC-CCHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHhC----cCCEEEECchhhhcc--cCCCcEE
Confidence 34446789999997 8999888776432 4699999999 99999999875 468999999998753 3689999
Q ss_pred EEcCCC
Q 042616 117 LIDCNI 122 (220)
Q Consensus 117 fiD~~k 122 (220)
+.+.+-
T Consensus 131 IsNPPF 136 (279)
T PHA03411 131 ISNPPF 136 (279)
T ss_pred EEcCCc
Confidence 998876
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-06 Score=75.97 Aligned_cols=104 Identities=15% Similarity=0.059 Sum_probs=77.7
Q ss_pred CCC-CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEE
Q 042616 20 GKR-GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFV 98 (220)
Q Consensus 20 ~~~-~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v 98 (220)
+|. .+.+...+.+...+...+.+.||||||| +|..|..|+.. +.+|+++|.| +.+++.+++++.. ..+++++
T Consensus 8 gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G-~G~lt~~L~~~----~~~v~~iE~d-~~~~~~l~~~~~~-~~~v~v~ 80 (253)
T TIGR00755 8 GQNFLIDESVIQKIVEAANVLEGDVVLEIGPG-LGALTEPLLKR----AKKVTAIEID-PRLAEILRKLLSL-YERLEVI 80 (253)
T ss_pred CCccCCCHHHHHHHHHhcCCCCcCEEEEeCCC-CCHHHHHHHHh----CCcEEEEECC-HHHHHHHHHHhCc-CCcEEEE
Confidence 454 4777887777777777788999999997 99999999875 3469999999 9999999988754 3679999
Q ss_pred EcchhhhhhhcCCCcc---EEEEcCCCCCccHHHHHHHHH
Q 042616 99 KGDAQKLLMGDYRGAD---FVLIDCNIDIDGHKNVFRAAK 135 (220)
Q Consensus 99 ~gda~~~L~~~~~~~D---~VfiD~~k~~~~y~~~l~~l~ 135 (220)
++|+.+.-. ..+| +|+-.-+- ......+..+.
T Consensus 81 ~~D~~~~~~---~~~d~~~~vvsNlPy--~i~~~il~~ll 115 (253)
T TIGR00755 81 EGDALKVDL---PDFPKQLKVVSNLPY--NISSPLIFKLL 115 (253)
T ss_pred ECchhcCCh---hHcCCcceEEEcCCh--hhHHHHHHHHh
Confidence 999987432 2455 66655544 44455555555
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.1e-07 Score=69.71 Aligned_cols=110 Identities=13% Similarity=0.040 Sum_probs=77.7
Q ss_pred ChhHHHHHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh
Q 042616 25 EPDVGEFISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ 103 (220)
Q Consensus 25 ~p~~~~~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~ 103 (220)
.....+++..+.. ..+..+||||||| .|..+..|+.. +-+++.+|++ +..++. .++....-+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~----~~~~~g~D~~-~~~~~~---------~~~~~~~~~~~ 70 (161)
T PF13489_consen 6 YRAYADLLERLLPRLKPGKRVLDIGCG-TGSFLRALAKR----GFEVTGVDIS-PQMIEK---------RNVVFDNFDAQ 70 (161)
T ss_dssp CHCHHHHHHHHHTCTTTTSEEEEESST-TSHHHHHHHHT----TSEEEEEESS-HHHHHH---------TTSEEEEEECH
T ss_pred HHHHHHHHHHHhcccCCCCEEEEEcCC-CCHHHHHHHHh----CCEEEEEECC-HHHHhh---------hhhhhhhhhhh
Confidence 3455677887775 6778999999997 89988888653 5599999999 888876 12233333222
Q ss_pred hhhhhcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 104 KLLMGDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+.. ...++||+|+.-.-- .-.+...+++.+.+. |+| ||++++....
T Consensus 71 ~~~-~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~--Lkp-gG~l~~~~~~ 117 (161)
T PF13489_consen 71 DPP-FPDGSFDLIICNDVLEHLPDPEEFLKELSRL--LKP-GGYLVISDPN 117 (161)
T ss_dssp THH-CHSSSEEEEEEESSGGGSSHHHHHHHHHHHC--EEE-EEEEEEEEEB
T ss_pred hhh-ccccchhhHhhHHHHhhcccHHHHHHHHHHh--cCC-CCEEEEEEcC
Confidence 322 125799999976544 114568889999998 886 8888887654
|
... |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.4e-07 Score=80.32 Aligned_cols=89 Identities=21% Similarity=0.202 Sum_probs=73.0
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhh
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~ 108 (220)
.|+|..|. ..+...+||.+|| .|.-|..|+...++ .|+|+++|.| +++++.|++.+.. .+++++++++..++...
T Consensus 9 ~Evl~~L~-~~pg~~vlD~TlG-~GGhS~~il~~~~~-~g~VigiD~D-~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 9 DEVVDALA-IKPDGIYVDGTFG-GGGHSRAILERLGP-KGRLIAIDRD-PDAIAAAKDRLKP-FGRFTLVHGNFSNLKEV 83 (296)
T ss_pred HHHHHhhC-CCCCCEEEEeCcC-ChHHHHHHHHhCCC-CCEEEEEcCC-HHHHHHHHHhhcc-CCcEEEEeCCHHHHHHH
Confidence 45566553 4556799999986 89999999998765 7999999999 9999999998865 57899999999987644
Q ss_pred cCC---CccEEEEcCCC
Q 042616 109 DYR---GADFVLIDCNI 122 (220)
Q Consensus 109 ~~~---~~D~VfiD~~k 122 (220)
+.. ++|.|++|...
T Consensus 84 l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 84 LAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHcCCCccCEEEECCCc
Confidence 333 79999999887
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.4e-07 Score=77.55 Aligned_cols=127 Identities=15% Similarity=0.142 Sum_probs=86.9
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEE-EEEcchhhhhhhc-CCCccEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIE-FVKGDAQKLLMGD-YRGADFVL 117 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve-~v~gda~~~L~~~-~~~~D~Vf 117 (220)
---+||+||| +|..=-..-- .+ +.+|||||++ +.+-+.|.+.++ .-..+++ |+++++++ ||++ ..++|.|+
T Consensus 77 K~~vLEvgcG-tG~Nfkfy~~--~p-~~svt~lDpn-~~mee~~~ks~~E~k~~~~~~fvva~ge~-l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 77 KGDVLEVGCG-TGANFKFYPW--KP-INSVTCLDPN-EKMEEIADKSAAEKKPLQVERFVVADGEN-LPQLADGSYDTVV 150 (252)
T ss_pred ccceEEeccc-CCCCcccccC--CC-CceEEEeCCc-HHHHHHHHHHHhhccCcceEEEEeechhc-CcccccCCeeeEE
Confidence 3447999996 8875332221 13 7899999999 999999999886 3334576 99999988 5555 57899985
Q ss_pred ---EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC-CCCcc-----ceEEEeeecCCcEEEEEE
Q 042616 118 ---IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP-KGSWR-----GYKTHFLPIGEGLLVTRI 177 (220)
Q Consensus 118 ---iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~-~g~~~-----~~~s~~lPig~Gl~v~~~ 177 (220)
+=|.. .+..+.|+...+. |+|.|.++....+-- -+.|+ .++..---+++|-.+++-
T Consensus 151 ~TlvLCSv--e~~~k~L~e~~rl--LRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd 215 (252)
T KOG4300|consen 151 CTLVLCSV--EDPVKQLNEVRRL--LRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRD 215 (252)
T ss_pred EEEEEecc--CCHHHHHHHHHHh--cCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehh
Confidence 55777 8889999999999 988444444443322 22454 234333336777666654
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-06 Score=77.23 Aligned_cols=97 Identities=13% Similarity=0.068 Sum_probs=69.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcc--c----CCcEEEEEcchhhhhhhcCCCc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGR--Y----ANCIEFVKGDAQKLLMGDYRGA 113 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g--~----~~~Ve~v~gda~~~L~~~~~~~ 113 (220)
+..+|||+||| +|..++.|+.. +.+|+++|.+ +.+++.|+++++. . ..++++..+|..+. .+.|
T Consensus 144 ~~~~VLDlGcG-tG~~a~~la~~----g~~V~gvD~S-~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~f 213 (315)
T PLN02585 144 AGVTVCDAGCG-TGSLAIPLALE----GAIVSASDIS-AAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKY 213 (315)
T ss_pred CCCEEEEecCC-CCHHHHHHHHC----CCEEEEEECC-HHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCc
Confidence 56799999997 99999999863 6799999999 9999999998862 1 24689999997552 3689
Q ss_pred cEEEEc-CCCC--CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 114 DFVLID-CNID--IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 114 D~VfiD-~~k~--~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+|+.= .-.+ .......++.+... . +|++++..
T Consensus 214 D~Vv~~~vL~H~p~~~~~~ll~~l~~l---~-~g~liIs~ 249 (315)
T PLN02585 214 DTVTCLDVLIHYPQDKADGMIAHLASL---A-EKRLIISF 249 (315)
T ss_pred CEEEEcCEEEecCHHHHHHHHHHHHhh---c-CCEEEEEe
Confidence 998732 2110 02234456666654 3 47777754
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-06 Score=76.71 Aligned_cols=105 Identities=10% Similarity=0.088 Sum_probs=73.4
Q ss_pred CCCEEEEEcCCchHHH----HHHHHHHcCC---CCcEEEEEeCCchhHHHHHHHHhc-----------------------
Q 042616 40 NAQLIVMACSSIAVSR----TLALVAAARQ---TGGRVVCILSGVIGDIDASKKSLG----------------------- 89 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~s----Tl~LA~A~~~---~~grV~tIE~d~~~~~~~Ar~~l~----------------------- 89 (220)
++.+|+++||| +|-- ++.|++..+. .+.+|+++|++ +.+++.|++.+-
T Consensus 99 ~~~ri~d~GCg-tGee~YslA~~l~e~~~~~~~~~~~I~g~Dis-~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 99 RRVRIWSAGCS-TGEEPYSLAMLLAETLPKAREPDVKILATDID-LKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCEEEEecccc-CChHHHHHHHHHHHHhhhcCCCCeEEEEEECC-HHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 45799999996 9963 4455555442 24689999999 999999998541
Q ss_pred -----ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 90 -----RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 90 -----g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+.++|+|.++|..+.-+ ..++||+||.-.-- +...-..+++.+.+. |+| ||.++.-
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~--L~p-GG~L~lg 241 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESP-PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEA--LKP-GGYLFLG 241 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCC-ccCCCCEEEechhHHhCCHHHHHHHHHHHHHH--hCC-CeEEEEE
Confidence 123579999999987432 24789999963211 002335688899988 876 7877764
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-06 Score=70.67 Aligned_cols=110 Identities=13% Similarity=0.025 Sum_probs=70.0
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--c--cCCcEEEEEcchhhhh-h-hc-
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--R--YANCIEFVKGDAQKLL-M-GD- 109 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g--~~~~Ve~v~gda~~~L-~-~~- 109 (220)
...++++|||+||| +|..++.+|... ...+|+.-|.+ + .++..+.|++ + ...+|++..-|..+.+ + .+
T Consensus 42 ~~~~~~~VLELGaG-~Gl~gi~~a~~~--~~~~Vv~TD~~-~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~ 116 (173)
T PF10294_consen 42 ELFRGKRVLELGAG-TGLPGIAAAKLF--GAARVVLTDYN-E-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLE 116 (173)
T ss_dssp GGTTTSEEEETT-T-TSHHHHHHHHT---T-SEEEEEE-S---HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS
T ss_pred hhcCCceEEEECCc-cchhHHHHHhcc--CCceEEEeccc-h-hhHHHHHHHHhccccccccccCcEEEecCcccccccc
Confidence 46678999999997 999999888763 25799999999 7 9999999997 3 3466777775542211 1 11
Q ss_pred CCCccEEE-EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 110 YRGADFVL-IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 110 ~~~~D~Vf-iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
..+||+|+ -|+--+...+...++.+... +.+.+.+++++-..
T Consensus 117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~l--l~~~~~vl~~~~~R 159 (173)
T PF10294_consen 117 PHSFDVILASDVLYDEELFEPLVRTLKRL--LKPNGKVLLAYKRR 159 (173)
T ss_dssp -SSBSEEEEES--S-GGGHHHHHHHHHHH--BTT-TTEEEEEE-S
T ss_pred cccCCEEEEecccchHHHHHHHHHHHHHH--hCCCCEEEEEeCEe
Confidence 35899998 35444446778889999888 88878888877443
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-06 Score=75.07 Aligned_cols=114 Identities=17% Similarity=0.186 Sum_probs=88.3
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCC----CcEEEEEeCCchhHHHHHHHHhc--ccCCc--EEEEEcc
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQT----GGRVVCILSGVIGDIDASKKSLG--RYANC--IEFVKGD 101 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~----~grV~tIE~d~~~~~~~Ar~~l~--g~~~~--Ve~v~gd 101 (220)
.|+..|-.. +..++||+++| +|-.|..+...+..+ .++|+-+|++ |.+++.+++... ++.+. +++++||
T Consensus 91 ~~v~~L~p~-~~m~~lDvaGG-TGDiaFril~~v~s~~~~~~~~V~v~Din-p~mL~vgkqRa~~~~l~~~~~~~w~~~d 167 (296)
T KOG1540|consen 91 MFVSKLGPG-KGMKVLDVAGG-TGDIAFRILRHVKSQFGDRESKVTVLDIN-PHMLAVGKQRAKKRPLKASSRVEWVEGD 167 (296)
T ss_pred HhhhccCCC-CCCeEEEecCC-cchhHHHHHHhhccccCCCCceEEEEeCC-HHHHHHHHHHHhhcCCCcCCceEEEeCC
Confidence 344444333 33789999965 999999999887652 3899999999 999999998774 56433 9999999
Q ss_pred hhhhhhhcCCCccEEEEcCCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDI-DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|++ ||...+.||...+-..-++ ...++.++.+.+. |+| ||.+.+-
T Consensus 168 AE~-LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRV--LKp-GGrf~cL 213 (296)
T KOG1540|consen 168 AED-LPFDDDSFDAYTIAFGIRNVTHIQKALREAYRV--LKP-GGRFSCL 213 (296)
T ss_pred ccc-CCCCCCcceeEEEecceecCCCHHHHHHHHHHh--cCC-CcEEEEE
Confidence 998 5654688999998877633 3457889999998 887 8887764
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.9e-06 Score=70.79 Aligned_cols=95 Identities=16% Similarity=0.110 Sum_probs=77.0
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDC 120 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~ 120 (220)
+++||||| .|+=++.||-+.| .-+++-||+. ..++..-+.... ++ ++++++++.+++ +.....||+|+.=+
T Consensus 51 ~~lDiGSG-aGfPGipLaI~~p--~~~~~LvEs~-~KK~~FL~~~~~~L~L-~nv~v~~~R~E~--~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSG-AGFPGIPLAIARP--DLQVTLVESV-GKKVAFLKEVVRELGL-SNVEVINGRAEE--PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETST-TTTTHHHHHHH-T--TSEEEEEESS-HHHHHHHHHHHHHHT--SSEEEEES-HHH--TTTTT-EEEEEEES
T ss_pred eEEecCCC-CCChhHHHHHhCC--CCcEEEEeCC-chHHHHHHHHHHHhCC-CCEEEEEeeecc--cccCCCccEEEeeh
Confidence 79999997 8999999998876 5889999999 999998888887 77 589999999999 33357899999776
Q ss_pred CCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 121 NIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 121 ~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
- ......++.+.+. +++ ||.+++.
T Consensus 124 v---~~l~~l~~~~~~~--l~~-~G~~l~~ 147 (184)
T PF02527_consen 124 V---APLDKLLELARPL--LKP-GGRLLAY 147 (184)
T ss_dssp S---SSHHHHHHHHGGG--EEE-EEEEEEE
T ss_pred h---cCHHHHHHHHHHh--cCC-CCEEEEE
Confidence 4 4678899999998 875 8877764
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.6e-06 Score=77.74 Aligned_cols=129 Identities=16% Similarity=0.139 Sum_probs=98.8
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
|...+....+++...+....+..+|||.+++ .|-=|..||+.+...++.|+++|.+ +.+++..+.|++ |+ .++.+
T Consensus 136 G~~~vQd~sS~l~a~~L~p~pge~VlD~cAA-PGGKTthla~~~~~~~~iV~A~D~~-~~Rl~~l~~nl~RlG~-~nv~~ 212 (355)
T COG0144 136 GLIYVQDEASQLPALVLDPKPGERVLDLCAA-PGGKTTHLAELMENEGAIVVAVDVS-PKRLKRLRENLKRLGV-RNVIV 212 (355)
T ss_pred eEEEEcCHHHHHHHHHcCCCCcCEEEEECCC-CCCHHHHHHHhcCCCCceEEEEcCC-HHHHHHHHHHHHHcCC-CceEE
Confidence 3445666677888888888899999999974 8888999999988767788999999 999999999998 77 45888
Q ss_pred EEcchhhhhhhc--CCCccEEEEcCCCCC-----------------------ccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 98 VKGDAQKLLMGD--YRGADFVLIDCNIDI-----------------------DGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 98 v~gda~~~L~~~--~~~~D~VfiD~~k~~-----------------------~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
++.|+....... ...||.|++|++=.. ..-.++++.+.+. |+| ||+||...+
T Consensus 213 ~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~--lk~-GG~LVYSTC 289 (355)
T COG0144 213 VNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKL--LKP-GGVLVYSTC 289 (355)
T ss_pred EecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHh--cCC-CCEEEEEcc
Confidence 898887543222 235999999987511 0114456667777 775 999999877
Q ss_pred CC
Q 042616 153 LP 154 (220)
Q Consensus 153 ~~ 154 (220)
..
T Consensus 290 S~ 291 (355)
T COG0144 290 SL 291 (355)
T ss_pred CC
Confidence 64
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.2e-06 Score=68.19 Aligned_cols=123 Identities=11% Similarity=0.096 Sum_probs=84.3
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCC-------cEEEEEeCCchhHHHHHHHHhc--cc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTG-------GRVVCILSGVIGDIDASKKSLG--RY 91 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~-------grV~tIE~d~~~~~~~Ar~~l~--g~ 91 (220)
.-.+.|..|..|..++...+...+||--|| +|...+-.|....... .++++.|.| +++++.|++|++ ++
T Consensus 9 ~a~L~~~lA~~ll~la~~~~~~~vlDP~CG-sGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~-~~~v~~a~~N~~~ag~ 86 (179)
T PF01170_consen 9 PAPLRPTLAAALLNLAGWRPGDVVLDPFCG-SGTILIEAALMGANIPPLNDINELKIIGSDID-PKAVRGARENLKAAGV 86 (179)
T ss_dssp STSS-HHHHHHHHHHTT--TTS-EEETT-T-TSHHHHHHHHHHTTTSTTTH-CH--EEEEESS-HHHHHHHHHHHHHTT-
T ss_pred CCCCCHHHHHHHHHHhCCCCCCEEeecCCC-CCHHHHHHHHHhhCcccccccccccEEecCCC-HHHHHHHHHHHHhccc
Confidence 346788899999999988888999999886 7877765444333211 148999999 999999999998 77
Q ss_pred CCcEEEEEcchhhhhhhcCCCccEEEEcCCCCC---------ccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 92 ANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDI---------DGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 92 ~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~---------~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.+.|++.++|+.++- ...+.+|.|+.|.+-.. ..|...++.+.+. +++ ..+++.
T Consensus 87 ~~~i~~~~~D~~~l~-~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~--l~~-~~v~l~ 149 (179)
T PF01170_consen 87 EDYIDFIQWDARELP-LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRV--LKP-RAVFLT 149 (179)
T ss_dssp CGGEEEEE--GGGGG-GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCH--STT-CEEEEE
T ss_pred CCceEEEecchhhcc-cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHH--CCC-CEEEEE
Confidence 778999999999854 33578999999987621 3466777888887 765 555444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.2e-06 Score=86.45 Aligned_cols=93 Identities=11% Similarity=-0.031 Sum_probs=69.1
Q ss_pred ChhHHHHHHHHHhhC----CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--cc-------
Q 042616 25 EPDVGEFISALAAGN----NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RY------- 91 (220)
Q Consensus 25 ~p~~~~~L~~La~~~----~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~------- 91 (220)
.|++-.|+..|.... ++++|||+||| +|..++.|+...+ .++|+++|.+ +++++.|++|++ ++
T Consensus 99 RpeTE~lve~L~~~~~~~~~~~~VLDlG~G-SG~Iai~La~~~~--~~~v~avDis-~~Al~~A~~Na~~n~l~~~~~~~ 174 (1082)
T PLN02672 99 EDWSFTFYEGLNRHPDSIFRDKTVAELGCG-NGWISIAIAEKWL--PSKVYGLDIN-PRAVKVAWINLYLNALDDDGLPV 174 (1082)
T ss_pred chhHHHHHHHHHhcccccCCCCEEEEEecc-hHHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHHHHHHcCcccccccc
Confidence 344445555543221 24689999997 9999999998765 4799999999 999999999996 32
Q ss_pred --------CCcEEEEEcchhhhhhhcCCCccEEEEcCC
Q 042616 92 --------ANCIEFVKGDAQKLLMGDYRGADFVLIDCN 121 (220)
Q Consensus 92 --------~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~ 121 (220)
.++|+|+++|..+.++....+||+|+-..+
T Consensus 175 ~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP 212 (1082)
T PLN02672 175 YDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP 212 (1082)
T ss_pred cccccccccccEEEEECchhhhccccCCceEEEEECCC
Confidence 247999999998876432236999986554
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.6e-06 Score=70.66 Aligned_cols=98 Identities=13% Similarity=0.125 Sum_probs=74.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcC--CCccEEE
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDY--RGADFVL 117 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~--~~~D~Vf 117 (220)
..+|||||| .|-+.+.+|..-| +-.+++||+. ...+..|.+.+. ++ .|+.++++||..+++.+. +++|-|+
T Consensus 19 ~l~lEIG~G-~G~~l~~~A~~~P--d~n~iGiE~~-~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~ 93 (195)
T PF02390_consen 19 PLILEIGCG-KGEFLIELAKRNP--DINFIGIEIR-KKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIY 93 (195)
T ss_dssp EEEEEET-T-TSHHHHHHHHHST--TSEEEEEES--HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred CeEEEecCC-CCHHHHHHHHHCC--CCCEEEEecc-hHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEE
Confidence 388999997 9999999998754 6899999999 998888887776 66 789999999999886653 6899998
Q ss_pred EcCCCC--------Cc-cHHHHHHHHHhhcCCCCCCEEE
Q 042616 118 IDCNID--------ID-GHKNVFRAAKESVMHGSGAGVI 147 (220)
Q Consensus 118 iD~~k~--------~~-~y~~~l~~l~~~~~L~~~Ggvi 147 (220)
|-.+-+ ++ -..+.++.+.+. |+| ||.|
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~--L~~-gG~l 129 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARV--LKP-GGEL 129 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHH--EEE-EEEE
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHH--cCC-CCEE
Confidence 865430 01 237788999998 876 6764
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=9e-06 Score=73.32 Aligned_cols=79 Identities=11% Similarity=0.013 Sum_probs=60.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---ccCCcEEEEE-cchhhhhhhc---CCC
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---RYANCIEFVK-GDAQKLLMGD---YRG 112 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---g~~~~Ve~v~-gda~~~L~~~---~~~ 112 (220)
+..++|||||| +|.....|+...+ +.+++++|+| +..++.|++|++ ++.++|+++. .+..++.... .+.
T Consensus 114 ~~~~vLDIGtG-ag~I~~lLa~~~~--~~~~~atDId-~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~ 189 (321)
T PRK11727 114 ANVRVLDIGVG-ANCIYPLIGVHEY--GWRFVGSDID-PQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNER 189 (321)
T ss_pred CCceEEEecCC-ccHHHHHHHhhCC--CCEEEEEeCC-HHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCc
Confidence 35789999997 7777666765443 6899999999 999999999997 3778899964 5555544322 357
Q ss_pred ccEEEEcCCC
Q 042616 113 ADFVLIDCNI 122 (220)
Q Consensus 113 ~D~VfiD~~k 122 (220)
||||+...+-
T Consensus 190 fDlivcNPPf 199 (321)
T PRK11727 190 FDATLCNPPF 199 (321)
T ss_pred eEEEEeCCCC
Confidence 9999988766
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.8e-06 Score=79.74 Aligned_cols=103 Identities=10% Similarity=0.174 Sum_probs=73.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCC--CcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQT--GGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~--~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+.|+++||| +|......++|+... ..+|++||.+ +.+....++.++ +++++|+++++|.+++-. ..++|+|
T Consensus 187 ~~vVldVGAG-rGpL~~~al~A~~~~~~a~~VyAVEkn-~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--pekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAG-RGPLSMFALQAGARAGGAVKVYAVEKN-PNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--PEKVDII 262 (448)
T ss_dssp T-EEEEES-T-TSHHHHHHHHTTHHHCCESEEEEEESS-THHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--SS-EEEE
T ss_pred ceEEEEeCCC-ccHHHHHHHHHHHHhCCCeEEEEEcCC-HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--CCceeEE
Confidence 4679999997 999887766664221 3589999999 887777666543 788899999999998642 4689999
Q ss_pred E---EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 117 L---IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 117 f---iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+ ++.--+++.-++.+....+. |+| ||+++=.
T Consensus 263 VSElLGsfg~nEl~pE~Lda~~rf--Lkp-~Gi~IP~ 296 (448)
T PF05185_consen 263 VSELLGSFGDNELSPECLDAADRF--LKP-DGIMIPS 296 (448)
T ss_dssp EE---BTTBTTTSHHHHHHHGGGG--EEE-EEEEESS
T ss_pred EEeccCCccccccCHHHHHHHHhh--cCC-CCEEeCc
Confidence 7 44333346678899988888 876 7877643
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.1e-07 Score=77.21 Aligned_cols=96 Identities=10% Similarity=0.088 Sum_probs=72.6
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--c-cCC----cEEEEEcchhhhhhhcCCCcc
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--R-YAN----CIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g-~~~----~Ve~v~gda~~~L~~~~~~~D 114 (220)
++|||+||| .|..|..||+- |..|++||.. +++++.|++... . +.. ++++.+.++++.- +.||
T Consensus 91 ~~ilDvGCG-gGLLSepLArl----ga~V~GID~s-~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~----~~fD 160 (282)
T KOG1270|consen 91 MKILDVGCG-GGLLSEPLARL----GAQVTGIDAS-DDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT----GKFD 160 (282)
T ss_pred ceEEEeccC-ccccchhhHhh----CCeeEeeccc-HHHHHHHHHhhhcCchhccccceeeehhhcchhhcc----cccc
Confidence 679999997 89999999974 8899999999 999999999854 2 223 4788888877743 4599
Q ss_pred EEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 115 FVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 115 ~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.|+.=--. +..+..+.++.+..+ |+|.|.+++.
T Consensus 161 aVvcsevleHV~dp~~~l~~l~~~--lkP~G~lfit 194 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLNCLSAL--LKPNGRLFIT 194 (282)
T ss_pred eeeeHHHHHHHhCHHHHHHHHHHH--hCCCCceEee
Confidence 99843211 114567888999998 9885555544
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.1e-05 Score=70.86 Aligned_cols=100 Identities=11% Similarity=0.038 Sum_probs=72.9
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc-CCcEEEEEcchhhhhhhc
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY-ANCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~-~~~Ve~v~gda~~~L~~~ 109 (220)
|+..-+|++||-||.| -|.+.--+. +. ..+|+-||+| ++.++.+|+++- ++ ..+++++.. +....
T Consensus 67 l~~h~~pk~VLIiGGG-DGg~~REvL---kh-~~~v~mVeID-~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~~ 136 (262)
T PRK00536 67 GCTKKELKEVLIVDGF-DLELAHQLF---KY-DTHVDFVQAD-EKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDLD 136 (262)
T ss_pred HhhCCCCCeEEEEcCC-chHHHHHHH---Cc-CCeeEEEECC-HHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhcc
Confidence 3345778999999954 776554444 44 3599999999 999999999774 34 356888862 22211
Q ss_pred CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 110 YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 110 ~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
.+.||+|++|..- -.+.++.+.+. |+| ||++|+..
T Consensus 137 ~~~fDVIIvDs~~----~~~fy~~~~~~--L~~-~Gi~v~Qs 171 (262)
T PRK00536 137 IKKYDLIICLQEP----DIHKIDGLKRM--LKE-DGVFISVA 171 (262)
T ss_pred CCcCCEEEEcCCC----ChHHHHHHHHh--cCC-CcEEEECC
Confidence 3689999999754 25677888888 876 99999864
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-05 Score=69.82 Aligned_cols=109 Identities=15% Similarity=0.059 Sum_probs=81.8
Q ss_pred cCCC-CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEE
Q 042616 19 MGKR-GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEF 97 (220)
Q Consensus 19 ~~~~-~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~ 97 (220)
.||. .+.+...+-+-..+...+...|||||.| .|..|..|++. +.+|++||.| +..++.-++.+.. .+++++
T Consensus 8 ~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG-~GaLT~~Ll~~----~~~v~aiEiD-~~l~~~L~~~~~~-~~n~~v 80 (259)
T COG0030 8 LGQNFLIDKNVIDKIVEAANISPGDNVLEIGPG-LGALTEPLLER----AARVTAIEID-RRLAEVLKERFAP-YDNLTV 80 (259)
T ss_pred cccccccCHHHHHHHHHhcCCCCCCeEEEECCC-CCHHHHHHHhh----cCeEEEEEeC-HHHHHHHHHhccc-ccceEE
Confidence 3554 4667777777778788888999999996 99999999985 6789999999 9999988888762 378999
Q ss_pred EEcchhhhh-hhcCCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 98 VKGDAQKLL-MGDYRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 98 v~gda~~~L-~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
++||+..+- +.+. .++.||-.-+- .--.+++..+...
T Consensus 81 i~~DaLk~d~~~l~-~~~~vVaNlPY--~Isspii~kll~~ 118 (259)
T COG0030 81 INGDALKFDFPSLA-QPYKVVANLPY--NISSPILFKLLEE 118 (259)
T ss_pred EeCchhcCcchhhc-CCCEEEEcCCC--cccHHHHHHHHhc
Confidence 999998753 2211 67888866554 4445555444443
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.5e-06 Score=72.93 Aligned_cols=99 Identities=20% Similarity=0.181 Sum_probs=75.3
Q ss_pred CCChh-HHHHHHHHHhhC-CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 23 GKEPD-VGEFISALAAGN-NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 23 ~~~p~-~~~~L~~La~~~-~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
.+.|+ .++.+..-+-.. ++..|++.-|| .|-.|+..|.- +..|++||.| |..+..||.|++ |..++|+|+
T Consensus 75 svTpe~ia~~iA~~v~~~~~~~~iidaf~g-~gGntiqfa~~----~~~VisIdiD-PikIa~AkhNaeiYGI~~rItFI 148 (263)
T KOG2730|consen 75 SVTPEKIAEHIANRVVACMNAEVIVDAFCG-VGGNTIQFALQ----GPYVIAIDID-PVKIACARHNAEVYGVPDRITFI 148 (263)
T ss_pred EeccHHHHHHHHHHHHHhcCcchhhhhhhc-CCchHHHHHHh----CCeEEEEecc-HHHHHHHhccceeecCCceeEEE
Confidence 34444 467776655544 88999998876 45566666642 7799999999 999999999999 888999999
Q ss_pred EcchhhhhhhcC---CCccEEEEcCCCCCccH
Q 042616 99 KGDAQKLLMGDY---RGADFVLIDCNIDIDGH 127 (220)
Q Consensus 99 ~gda~~~L~~~~---~~~D~VfiD~~k~~~~y 127 (220)
+||..++...+. ..+|+||+-++-....|
T Consensus 149 ~GD~ld~~~~lq~~K~~~~~vf~sppwggp~y 180 (263)
T KOG2730|consen 149 CGDFLDLASKLKADKIKYDCVFLSPPWGGPSY 180 (263)
T ss_pred echHHHHHHHHhhhhheeeeeecCCCCCCcch
Confidence 999999876652 34789998876533344
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-05 Score=72.01 Aligned_cols=117 Identities=10% Similarity=-0.030 Sum_probs=80.6
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhh
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLL 106 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L 106 (220)
..+.-.+. ....++||||||+ .||.+..|+.+- ...|++||++ +......+..-+ +. +...+.....-+-|
T Consensus 105 ~rl~p~l~-~L~gk~VLDIGC~-nGY~~frM~~~G---A~~ViGiDP~-~lf~~QF~~i~~~lg~-~~~~~~lplgvE~L 177 (315)
T PF08003_consen 105 DRLLPHLP-DLKGKRVLDIGCN-NGYYSFRMLGRG---AKSVIGIDPS-PLFYLQFEAIKHFLGQ-DPPVFELPLGVEDL 177 (315)
T ss_pred HHHHhhhC-CcCCCEEEEecCC-CcHHHHHHhhcC---CCEEEEECCC-hHHHHHHHHHHHHhCC-CccEEEcCcchhhc
Confidence 44444443 4577999999997 899999888753 3579999999 777655333222 33 23333444455667
Q ss_pred hhcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 107 MGDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
|. .+.||.||.=+-- +..+..+.+++++.. |++ ||.+|.+...-.|
T Consensus 178 p~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~--L~~-gGeLvLETlvi~g 224 (315)
T PF08003_consen 178 PN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDS--LRP-GGELVLETLVIDG 224 (315)
T ss_pred cc-cCCcCEEEEeeehhccCCHHHHHHHHHHh--hCC-CCEEEEEEeeecC
Confidence 76 6789999965533 225778889999998 876 9999987665444
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-05 Score=68.31 Aligned_cols=101 Identities=12% Similarity=0.051 Sum_probs=78.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcC--CCccEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDY--RGADFV 116 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~--~~~D~V 116 (220)
+..+|||||| .|-+.+.+|..-|+ --.++||+. ...+..|.+.+. ++ +|+.++++||.++++.+. +++|-|
T Consensus 49 ~pi~lEIGfG-~G~~l~~~A~~nP~--~nfiGiEi~-~~~v~~~l~k~~~~~l-~Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 49 APIVLEIGFG-MGEFLVEMAKKNPE--KNFLGIEIR-VPGVAKALKKIKELGL-KNLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred CcEEEEECCC-CCHHHHHHHHHCCC--CCEEEEEEe-hHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 4578999997 89999999998765 589999999 777777777775 66 499999999999997763 367777
Q ss_pred EE---cCCC------CCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 117 LI---DCNI------DIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fi---D~~k------~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+| |.+. ++=-+...++.+.+. |++ ||+|-+
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~--Lk~-gG~l~~ 162 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARK--LKP-GGVLHF 162 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHH--ccC-CCEEEE
Confidence 66 5443 112458889999998 876 676543
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.4e-06 Score=72.90 Aligned_cols=115 Identities=12% Similarity=0.137 Sum_probs=83.0
Q ss_pred HHHHHHHHhhCCCC-EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-cc-CCcEEEEEcchhhh
Q 042616 29 GEFISALAAGNNAQ-LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RY-ANCIEFVKGDAQKL 105 (220)
Q Consensus 29 ~~~L~~La~~~~a~-~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~-~~~Ve~v~gda~~~ 105 (220)
..++..++...... .++|+||| +|-.+..+|.- --+|+++|++ +++++.|++... .+ .....+...+..++
T Consensus 21 tdw~~~ia~~~~~h~~a~DvG~G-~Gqa~~~iae~----~k~VIatD~s-~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L 94 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDVGTG-NGQAARGIAEH----YKEVIATDVS-EAMLKVAKKHPPVTYCHTPSTMSSDEMVDL 94 (261)
T ss_pred HHHHHHHHhhCCCcceEEEeccC-CCcchHHHHHh----hhhheeecCC-HHHHHHhhcCCCcccccCCccccccccccc
Confidence 78888888877765 88999997 99766666653 3589999999 999999999876 22 12234444444444
Q ss_pred hhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 106 LMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 106 L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+ ...+++|+|..--..+-=+..+.++.+.+. |+++||++++=|-
T Consensus 95 ~-g~e~SVDlI~~Aqa~HWFdle~fy~~~~rv--LRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 95 L-GGEESVDLITAAQAVHWFDLERFYKEAYRV--LRKDGGLIAVWNY 138 (261)
T ss_pred c-CCCcceeeehhhhhHHhhchHHHHHHHHHH--cCCCCCEEEEEEc
Confidence 4 225789999865444222558889999999 9999989876443
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.5e-05 Score=68.06 Aligned_cols=118 Identities=16% Similarity=0.068 Sum_probs=88.9
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCC-ccEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRG-ADFVL 117 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~-~D~Vf 117 (220)
+++++||||| .|.=++.||-+.+ +.+||=||+. ..++..-+...+ ++ ++++++++.++++-+. .. ||+|.
T Consensus 68 ~~~~~DIGSG-aGfPGipLAI~~p--~~~vtLles~-~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~--~~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSG-AGFPGIPLAIAFP--DLKVTLLESL-GKKIAFLREVKKELGL-ENVEIVHGRAEEFGQE--KKQYDVVT 140 (215)
T ss_pred CCEEEEeCCC-CCCchhhHHHhcc--CCcEEEEccC-chHHHHHHHHHHHhCC-CCeEEehhhHhhcccc--cccCcEEE
Confidence 6899999997 8999999997665 4679999999 999998888876 66 6899999999997643 23 99998
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe-cCCCCC----------Ccc----ceEEEeeecCCc
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY-NALPKG----------SWR----GYKTHFLPIGEG 171 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d-Nv~~~g----------~~~----~~~s~~lPig~G 171 (220)
.=+- ......++.+.+. +++ ||.+++. -.-.++ .|. .+.+..+|.++|
T Consensus 141 sRAv---a~L~~l~e~~~pl--lk~-~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~ 203 (215)
T COG0357 141 SRAV---ASLNVLLELCLPL--LKV-GGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPELDG 203 (215)
T ss_pred eehc---cchHHHHHHHHHh--ccc-CCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecCCCCC
Confidence 6553 4667889999998 776 5554432 111222 122 567778888865
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.4e-05 Score=63.49 Aligned_cols=98 Identities=17% Similarity=0.089 Sum_probs=68.6
Q ss_pred hHHHHHHHHHhhCCCCEEEEEcCCchHH-HHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh
Q 042616 27 DVGEFISALAAGNNAQLIVMACSSIAVS-RTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL 105 (220)
Q Consensus 27 ~~~~~L~~La~~~~a~~ILEIGtg~~G~-sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~ 105 (220)
+.+++|.......+.++||||||| .|. .+..|++ .|-.|++||.+ +.+.+.|+++ .++++.+|..+-
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~G-fG~~vA~~L~~----~G~~ViaIDi~-~~aV~~a~~~------~~~~v~dDlf~p 70 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIG-FYFKVAKKLKE----SGFDVIVIDIN-EKAVEKAKKL------GLNAFVDDLFNP 70 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEec-CCHHHHHHHHH----CCCEEEEEECC-HHHHHHHHHh------CCeEEECcCCCC
Confidence 457777776666667899999997 886 6666664 27799999999 9988888775 378889988764
Q ss_pred hhhcCCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 106 LMGDYRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 106 L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
-+.+...+|+|+-==+. .+.....++.+.+.
T Consensus 71 ~~~~y~~a~liysirpp-~el~~~~~~la~~~ 101 (134)
T PRK04148 71 NLEIYKNAKLIYSIRPP-RDLQPFILELAKKI 101 (134)
T ss_pred CHHHHhcCCEEEEeCCC-HHHHHHHHHHHHHc
Confidence 44556889999843333 03334445555543
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-05 Score=69.80 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=69.7
Q ss_pred HHHHHHHHhhCCCC--EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhccc----------CCcEE
Q 042616 29 GEFISALAAGNNAQ--LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRY----------ANCIE 96 (220)
Q Consensus 29 ~~~L~~La~~~~a~--~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~----------~~~Ve 96 (220)
++.|..-+...+.. +|||+-+| +|.-++-+|.. |++|+.||.+ +..+...+.+++.+ ..+++
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAG-lG~Da~~las~----G~~V~~vEr~-p~vaalL~dgL~ra~~~~~~~~~~~~ri~ 148 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAG-LGRDAFVLASV----GCRVRMLERN-PVVAALLDDGLARGYADAEIGGWLQERLQ 148 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCC-ccHHHHHHHHc----CCEEEEEECC-HHHHHHHHHHHHHhhhccccchhhhceEE
Confidence 35555555445555 89998665 89988877763 7889999999 99999999888721 25699
Q ss_pred EEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 97 FVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 97 ~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
++++|+.++|......||+||+|..-
T Consensus 149 l~~~da~~~L~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 149 LIHASSLTALTDITPRPQVVYLDPMF 174 (250)
T ss_pred EEeCcHHHHHhhCCCCCcEEEECCCC
Confidence 99999999998766689999999865
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.1e-05 Score=71.26 Aligned_cols=116 Identities=17% Similarity=0.107 Sum_probs=90.4
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
..++|..++.+..|++..+.+.|||==|| ||...+-.. - .|.++++.|.| ..+++-|+.|++ ++ ....++.
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcG-TGgiLiEag---l-~G~~viG~Did-~~mv~gak~Nl~~y~i-~~~~~~~ 251 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCG-TGGILIEAG---L-MGARVIGSDID-ERMVRGAKINLEYYGI-EDYPVLK 251 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCC-ccHHHHhhh---h-cCceEeecchH-HHHHhhhhhhhhhhCc-CceeEEE
Confidence 46899999999999999999999998775 776655322 2 38999999999 999999999999 44 4566666
Q ss_pred c-chhhhhhhcC-CCccEEEEcCCCCC----------ccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 100 G-DAQKLLMGDY-RGADFVLIDCNIDI----------DGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 100 g-da~~~L~~~~-~~~D~VfiD~~k~~----------~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+ ||.. +| +. ..+|-|..|.+-.. +.|.+.|+.+.+. |++ ||.+|+
T Consensus 252 ~~Da~~-lp-l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~ev--Lk~-gG~~vf 308 (347)
T COG1041 252 VLDATN-LP-LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEV--LKP-GGRIVF 308 (347)
T ss_pred eccccc-CC-CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHH--hhc-CcEEEE
Confidence 6 8887 44 33 35999999987622 2377888888888 875 776555
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.7e-06 Score=68.58 Aligned_cols=107 Identities=21% Similarity=0.181 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL 105 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~ 105 (220)
.+.|-++++.... ..+.|+|+| +|..+...|.+ ..||++||.| |..+..|++|+. |+ +++++++|||.++
T Consensus 21 lavF~~ai~~va~-d~~~DLGaG-sGiLs~~Aa~~----A~rViAiE~d-Pk~a~~a~eN~~v~g~-~n~evv~gDA~~y 92 (252)
T COG4076 21 LAVFTSAIAEVAE-DTFADLGAG-SGILSVVAAHA----AERVIAIEKD-PKRARLAEENLHVPGD-VNWEVVVGDARDY 92 (252)
T ss_pred HHHHHHHHHHHhh-hceeeccCC-cchHHHHHHhh----hceEEEEecC-cHHHHHhhhcCCCCCC-cceEEEecccccc
Confidence 4566666666555 778999997 89988877766 4699999999 999999999987 65 7899999999885
Q ss_pred hhhcCCCccEEE---EcCCCCCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 106 LMGDYRGADFVL---IDCNIDIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 106 L~~~~~~~D~Vf---iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
- ....|.|. +|...=.+....+++.+.+. |+- .+.|+
T Consensus 93 ~---fe~ADvvicEmlDTaLi~E~qVpV~n~vleF--Lr~-d~tii 132 (252)
T COG4076 93 D---FENADVVICEMLDTALIEEKQVPVINAVLEF--LRY-DPTII 132 (252)
T ss_pred c---ccccceeHHHHhhHHhhcccccHHHHHHHHH--hhc-CCccc
Confidence 3 24556664 33322112235566666665 554 33333
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.6e-05 Score=65.95 Aligned_cols=87 Identities=10% Similarity=0.051 Sum_probs=63.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLI 118 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~Vfi 118 (220)
+..+|||+||| +|..+..|+... +..+++||.+ +++++.|++ .+++++++|+.+.++.. .++||+|+.
T Consensus 13 ~~~~iLDiGcG-~G~~~~~l~~~~---~~~~~giD~s-~~~i~~a~~------~~~~~~~~d~~~~l~~~~~~sfD~Vi~ 81 (194)
T TIGR02081 13 PGSRVLDLGCG-DGELLALLRDEK---QVRGYGIEID-QDGVLACVA------RGVNVIQGDLDEGLEAFPDKSFDYVIL 81 (194)
T ss_pred CCCEEEEeCCC-CCHHHHHHHhcc---CCcEEEEeCC-HHHHHHHHH------cCCeEEEEEhhhcccccCCCCcCEEEE
Confidence 56799999997 999998887642 4578999999 988888764 24788999987755322 468999998
Q ss_pred cCCC-CCccHHHHHHHHHhh
Q 042616 119 DCNI-DIDGHKNVFRAAKES 137 (220)
Q Consensus 119 D~~k-~~~~y~~~l~~l~~~ 137 (220)
-..- .-.+....++.+.+.
T Consensus 82 ~~~l~~~~d~~~~l~e~~r~ 101 (194)
T TIGR02081 82 SQTLQATRNPEEILDEMLRV 101 (194)
T ss_pred hhHhHcCcCHHHHHHHHHHh
Confidence 6543 113456667777765
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2e-05 Score=68.30 Aligned_cols=145 Identities=15% Similarity=0.119 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHhh-CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-cc------C-----
Q 042616 26 PDVGEFISALAAG-NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RY------A----- 92 (220)
Q Consensus 26 p~~~~~L~~La~~-~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~------~----- 92 (220)
++.-..|..|-.. ..++.+|||||. +|..|+.+|+-... .+|+++|+| +..++.|+++++ -. .
T Consensus 43 ~~~D~rLk~L~~~~f~~~~~LDIGCN-sG~lt~~iak~F~~--r~iLGvDID-~~LI~~Ark~~r~~~~~~~~~~~~~~~ 118 (288)
T KOG2899|consen 43 GDSDPRLKVLEKDWFEPKQALDIGCN-SGFLTLSIAKDFGP--RRILGVDID-PVLIQRARKEIRFPCDHETEVSGKFPA 118 (288)
T ss_pred CCCChhhhhccccccCcceeEeccCC-cchhHHHHHHhhcc--ceeeEeecc-HHHHHHHHHhccccccccccccCCCcc
Confidence 3444566666433 458999999997 89999999998753 779999999 999999999987 11 0
Q ss_pred ------------------------CcEEEEEc----chhhhhhhcCCCccEEE---------EcCCCCCccHHHHHHHHH
Q 042616 93 ------------------------NCIEFVKG----DAQKLLMGDYRGADFVL---------IDCNIDIDGHKNVFRAAK 135 (220)
Q Consensus 93 ------------------------~~Ve~v~g----da~~~L~~~~~~~D~Vf---------iD~~k~~~~y~~~l~~l~ 135 (220)
+++.|..+ +..++|......||.|+ +...- +-..+.|+.+.
T Consensus 119 ~~~~~~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD--~GL~~ff~kis 196 (288)
T KOG2899|consen 119 SFGVQFGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGD--DGLRRFFRKIS 196 (288)
T ss_pred ccccccccccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEeccccc--HHHHHHHHHHH
Confidence 01222111 22334422246799997 22222 44578899999
Q ss_pred hhcCCCCCCEEEEEecCCCCC--------------Ccc------ceEEEeeecCCcEEEEEEee
Q 042616 136 ESVMHGSGAGVIVGYNALPKG--------------SWR------GYKTHFLPIGEGLLVTRIGE 179 (220)
Q Consensus 136 ~~~~L~~~Ggviv~dNv~~~g--------------~~~------~~~s~~lPig~Gl~v~~~~~ 179 (220)
.+ |.| ||++|..-=-|+. .++ .|+..++.++-|++=.....
T Consensus 197 ~l--l~p-gGiLvvEPQpWksY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~ 257 (288)
T KOG2899|consen 197 SL--LHP-GGILVVEPQPWKSYKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLG 257 (288)
T ss_pred Hh--hCc-CcEEEEcCCchHHHHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeecccc
Confidence 98 865 9999987333322 011 57788888888877665553
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.9e-05 Score=64.90 Aligned_cols=118 Identities=10% Similarity=0.047 Sum_probs=82.2
Q ss_pred HHHHHHHHh----hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcch
Q 042616 29 GEFISALAA----GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDA 102 (220)
Q Consensus 29 ~~~L~~La~----~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda 102 (220)
-.+|..+.. ..+|.+|||+||| -|..-..|+.--- .+.++.||-+ +++++.|+...+ ++++.|+|.+.|.
T Consensus 52 v~wl~d~~~~~rv~~~A~~VlDLGtG-NG~~L~~L~~egf--~~~L~GvDYs-~~AV~LA~niAe~~~~~n~I~f~q~DI 127 (227)
T KOG1271|consen 52 VDWLKDLIVISRVSKQADRVLDLGTG-NGHLLFQLAKEGF--QSKLTGVDYS-EKAVELAQNIAERDGFSNEIRFQQLDI 127 (227)
T ss_pred HHHHHhhhhhhhhcccccceeeccCC-chHHHHHHHHhcC--CCCccccccC-HHHHHHHHHHHHhcCCCcceeEEEeec
Confidence 344444444 4456699999997 8988777877532 3779999999 999999888776 7877799999998
Q ss_pred hhhhhhcCCCccEEE---------EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 103 QKLLMGDYRGADFVL---------IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 103 ~~~L~~~~~~~D~Vf---------iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.+- ......||+|+ +-++...+...-|++.+.+. |+| ||++|.-...|
T Consensus 128 ~~~-~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~l--l~~-~gifvItSCN~ 184 (227)
T KOG1271|consen 128 TDP-DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKL--LSP-GGIFVITSCNF 184 (227)
T ss_pred cCC-cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhc--cCC-CcEEEEEecCc
Confidence 652 12235677665 32222123445567777777 765 99988876665
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.6e-05 Score=65.01 Aligned_cols=81 Identities=11% Similarity=0.073 Sum_probs=67.9
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
+.++++.++||||| +|+.+..|++...+ .....|+|+| |++++..++..+.-..+++.+..|....|.. ++.|++
T Consensus 40 ~~~~~~i~lEIG~G-SGvvstfL~~~i~~-~~~~latDiN-p~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~--~~VDvL 114 (209)
T KOG3191|consen 40 KGHNPEICLEIGCG-SGVVSTFLASVIGP-QALYLATDIN-PEALEATLETARCNRVHIDVVRTDLLSGLRN--ESVDVL 114 (209)
T ss_pred hhcCceeEEEecCC-cchHHHHHHHhcCC-CceEEEecCC-HHHHHHHHHHHHhcCCccceeehhHHhhhcc--CCccEE
Confidence 34558999999997 89999999998875 7788999999 9999998888873235699999999998855 889999
Q ss_pred EEcCCC
Q 042616 117 LIDCNI 122 (220)
Q Consensus 117 fiD~~k 122 (220)
+...+-
T Consensus 115 vfNPPY 120 (209)
T KOG3191|consen 115 VFNPPY 120 (209)
T ss_pred EECCCc
Confidence 877654
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.8e-05 Score=67.58 Aligned_cols=102 Identities=22% Similarity=0.178 Sum_probs=74.5
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.-.+.++|||||. +.|..++.++++-| +-+++-.|. |+.++.+++ .++|+++.||..+.+| . +|++
T Consensus 97 d~~~~~~vvDvGG-G~G~~~~~l~~~~P--~l~~~v~Dl--p~v~~~~~~-----~~rv~~~~gd~f~~~P---~-~D~~ 162 (241)
T PF00891_consen 97 DFSGFKTVVDVGG-GSGHFAIALARAYP--NLRATVFDL--PEVIEQAKE-----ADRVEFVPGDFFDPLP---V-ADVY 162 (241)
T ss_dssp TTTTSSEEEEET--TTSHHHHHHHHHST--TSEEEEEE---HHHHCCHHH-----TTTEEEEES-TTTCCS---S-ESEE
T ss_pred cccCccEEEeccC-cchHHHHHHHHHCC--CCcceeecc--Hhhhhcccc-----ccccccccccHHhhhc---c-ccce
Confidence 3446689999995 59999999998876 468888888 788888888 4899999999986554 3 9999
Q ss_pred EEcCCCC---CccHHHHHHHHHhhcCCCCC--CEEEEEecCCC
Q 042616 117 LIDCNID---IDGHKNVFRAAKESVMHGSG--AGVIVGYNALP 154 (220)
Q Consensus 117 fiD~~k~---~~~y~~~l~~l~~~~~L~~~--Ggviv~dNv~~ 154 (220)
++-.-.+ .++-..+|+.+... |+|. |-++|.|.++.
T Consensus 163 ~l~~vLh~~~d~~~~~iL~~~~~a--l~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 163 LLRHVLHDWSDEDCVKILRNAAAA--LKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp EEESSGGGS-HHHHHHHHHHHHHH--SEECTTEEEEEEEEEEC
T ss_pred eeehhhhhcchHHHHHHHHHHHHH--hCCCCCCeEEEEeeccC
Confidence 9844331 14557778999998 8763 45566665543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.9e-05 Score=67.41 Aligned_cols=113 Identities=18% Similarity=0.143 Sum_probs=79.6
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHH--HHhc-------c---
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASK--KSLG-------R--- 90 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar--~~l~-------g--- 90 (220)
-..|..-+++..+ ...+..+||..||| .|+-.+|||.. |-+|++||.+ +.+++.|. .++. +
T Consensus 21 ~~~p~L~~~~~~l-~~~~~~rvLvPgCG-~g~D~~~La~~----G~~VvGvDls-~~Ai~~~~~e~~~~~~~~~~~~~~~ 93 (218)
T PF05724_consen 21 EPNPALVEYLDSL-ALKPGGRVLVPGCG-KGYDMLWLAEQ----GHDVVGVDLS-PTAIEQAFEENNLEPTVTSVGGFKR 93 (218)
T ss_dssp TSTHHHHHHHHHH-TTSTSEEEEETTTT-TSCHHHHHHHT----TEEEEEEES--HHHHHHHHHHCTTEEECTTCTTEEE
T ss_pred CCCHHHHHHHHhc-CCCCCCeEEEeCCC-ChHHHHHHHHC----CCeEEEEecC-HHHHHHHHHHhccCCCcccccceee
Confidence 4566667777773 45666799999997 99999999973 6799999999 99999873 2321 1
Q ss_pred -cCCcEEEEEcchhhhhhhcCCCccEEEEcCC----CCCccHHHHHHHHHhhcCCCCCCEE
Q 042616 91 -YANCIEFVKGDAQKLLMGDYRGADFVLIDCN----IDIDGHKNVFRAAKESVMHGSGAGV 146 (220)
Q Consensus 91 -~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~----k~~~~y~~~l~~l~~~~~L~~~Ggv 146 (220)
-.++|++++||..++-+...++||+|+ |.. -+...=.+|.+.+..+ |+| ||.
T Consensus 94 ~~~~~i~~~~gDfF~l~~~~~g~fD~iy-Dr~~l~Alpp~~R~~Ya~~l~~l--l~p-~g~ 150 (218)
T PF05724_consen 94 YQAGRITIYCGDFFELPPEDVGKFDLIY-DRTFLCALPPEMRERYAQQLASL--LKP-GGR 150 (218)
T ss_dssp ETTSSEEEEES-TTTGGGSCHHSEEEEE-ECSSTTTS-GGGHHHHHHHHHHC--EEE-EEE
T ss_pred ecCCceEEEEcccccCChhhcCCceEEE-EecccccCCHHHHHHHHHHHHHH--hCC-CCc
Confidence 134689999999886554346899997 211 1114457888999988 876 666
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.6e-05 Score=74.97 Aligned_cols=106 Identities=16% Similarity=0.195 Sum_probs=84.9
Q ss_pred CChhHHHHHHHHHhhC---C-CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 24 KEPDVGEFISALAAGN---N-AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~---~-a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
.....++.|+..+..+ + .+.+||++|| +|.+++.||+. -++|+.||.+ |+.++.|+.|.+ |. .|.+|
T Consensus 363 ~Nt~~aevLys~i~e~~~l~~~k~llDv~CG-TG~iglala~~----~~~ViGvEi~-~~aV~dA~~nA~~Ngi-sNa~F 435 (534)
T KOG2187|consen 363 TNTSAAEVLYSTIGEWAGLPADKTLLDVCCG-TGTIGLALARG----VKRVIGVEIS-PDAVEDAEKNAQINGI-SNATF 435 (534)
T ss_pred cCcHHHHHHHHHHHHHhCCCCCcEEEEEeec-CCceehhhhcc----ccceeeeecC-hhhcchhhhcchhcCc-cceee
Confidence 4455677777777643 2 3667999996 99999988864 5899999999 999999999997 67 68999
Q ss_pred EEcchhhhhhhcCC----Ccc-EEEEcCCCCCccHHHHHHHHHhh
Q 042616 98 VKGDAQKLLMGDYR----GAD-FVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 98 v~gda~~~L~~~~~----~~D-~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
++|-|++.++.+.. .-+ .+++|.++ .+....++.++...
T Consensus 436 i~gqaE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~ 479 (534)
T KOG2187|consen 436 IVGQAEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAY 479 (534)
T ss_pred eecchhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhc
Confidence 99999999887742 446 88999987 46667778887776
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.2e-05 Score=69.50 Aligned_cols=125 Identities=14% Similarity=0.113 Sum_probs=93.0
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
..+......+...+....+...|||.+++ .|-=|..||+.+.. .|+|++.|.+ +.++...+.+++ |. .++.++.
T Consensus 67 ~~vQd~sS~l~~~~L~~~~~~~VLD~CAa-pGgKt~~la~~~~~-~g~i~A~D~~-~~Rl~~l~~~~~r~g~-~~v~~~~ 142 (283)
T PF01189_consen 67 FYVQDESSQLVALALDPQPGERVLDMCAA-PGGKTTHLAELMGN-KGEIVANDIS-PKRLKRLKENLKRLGV-FNVIVIN 142 (283)
T ss_dssp EEEHHHHHHHHHHHHTTTTTSEEEESSCT-TSHHHHHHHHHTTT-TSEEEEEESS-HHHHHHHHHHHHHTT--SSEEEEE
T ss_pred EEecccccccccccccccccccccccccC-CCCceeeeeecccc-hhHHHHhccC-HHHHHHHHHHHHhcCC-ceEEEEe
Confidence 34444555666666677788999999985 88888999988875 7999999999 999999999998 65 6788888
Q ss_pred cchhhhhhhcC-CCccEEEEcCCCCC-------c----------------cHHHHHHHHHhhcCC----CCCCEEEEEec
Q 042616 100 GDAQKLLMGDY-RGADFVLIDCNIDI-------D----------------GHKNVFRAAKESVMH----GSGAGVIVGYN 151 (220)
Q Consensus 100 gda~~~L~~~~-~~~D~VfiD~~k~~-------~----------------~y~~~l~~l~~~~~L----~~~Ggviv~dN 151 (220)
.|+....+... ..||.|++|++-.. . .-.+.|+.+.+. + +| ||.+|.--
T Consensus 143 ~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~--~~~~~k~-gG~lvYsT 219 (283)
T PF01189_consen 143 ADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKL--LNIDFKP-GGRLVYST 219 (283)
T ss_dssp SHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHC--EHHHBEE-EEEEEEEE
T ss_pred eccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHh--hcccccC-CCeEEEEe
Confidence 99988765443 45999999987611 0 012345566666 7 76 88888764
Q ss_pred CC
Q 042616 152 AL 153 (220)
Q Consensus 152 v~ 153 (220)
..
T Consensus 220 CS 221 (283)
T PF01189_consen 220 CS 221 (283)
T ss_dssp SH
T ss_pred cc
Confidence 43
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.7e-05 Score=68.54 Aligned_cols=91 Identities=18% Similarity=0.110 Sum_probs=76.1
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcc--cCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGR--YANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g--~~~~Ve~v~g 100 (220)
...|.+..-|..=|...++..|||+|-| +|..|..|.++ +.+|+|+|.| |.++....+.++| .+.+.++++|
T Consensus 41 lkNp~v~~~I~~ka~~k~tD~VLEvGPG-TGnLT~~lLe~----~kkVvA~E~D-prmvael~krv~gtp~~~kLqV~~g 114 (315)
T KOG0820|consen 41 LKNPLVIDQIVEKADLKPTDVVLEVGPG-TGNLTVKLLEA----GKKVVAVEID-PRMVAELEKRVQGTPKSGKLQVLHG 114 (315)
T ss_pred hcCHHHHHHHHhccCCCCCCEEEEeCCC-CCHHHHHHHHh----cCeEEEEecC-cHHHHHHHHHhcCCCccceeeEEec
Confidence 5668888888888889999999999986 99999999987 6799999999 9999888888874 4588999999
Q ss_pred chhhhhhhcCCCccEEEEcCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k 122 (220)
|....- ...||.++-.-+-
T Consensus 115 D~lK~d---~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 115 DFLKTD---LPRFDGCVSNLPY 133 (315)
T ss_pred ccccCC---CcccceeeccCCc
Confidence 987632 3568999866654
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.6e-05 Score=66.43 Aligned_cols=143 Identities=14% Similarity=0.143 Sum_probs=84.5
Q ss_pred CCChhHHHHHHHHHhh----CCCCEEEEEcCCchHHHHHHHHHHc---CCCCcEEEEEeCCc------------------
Q 042616 23 GKEPDVGEFISALAAG----NNAQLIVMACSSIAVSRTLALVAAA---RQTGGRVVCILSGV------------------ 77 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~----~~a~~ILEIGtg~~G~sTl~LA~A~---~~~~grV~tIE~d~------------------ 77 (220)
++.+.-..-|..++.. .-+..|+|.|+. -|.+++.++..+ ..++.+++..|.=+
T Consensus 53 m~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~-rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~ 131 (248)
T PF05711_consen 53 MIGRERLDNLYQAVEQVLAEDVPGDIVECGVW-RGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEF 131 (248)
T ss_dssp SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--T-TSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTC
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeC-CCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhh
Confidence 4555555556555553 347889999994 666666554433 22356788877421
Q ss_pred -------hhHHHHHHHHhc--cc-CCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEE
Q 042616 78 -------IGDIDASKKSLG--RY-ANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGV 146 (220)
Q Consensus 78 -------~~~~~~Ar~~l~--g~-~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggv 146 (220)
....+..++++. ++ .++++++.|...+.||.. ...+-++.||++. ++.....|+.+.+. |.| ||+
T Consensus 132 ~~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl-YesT~~aLe~lypr--l~~-GGi 207 (248)
T PF05711_consen 132 HEYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL-YESTKDALEFLYPR--LSP-GGI 207 (248)
T ss_dssp CGCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S-HHHHHHHHHHHGGG--EEE-EEE
T ss_pred hhcccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccc-hHHHHHHHHHHHhh--cCC-CeE
Confidence 013456777776 43 578999999999999875 3679999999998 34447778888998 764 999
Q ss_pred EEEecCCCCC------Ccc---ceEEEeeecCC
Q 042616 147 IVGYNALPKG------SWR---GYKTHFLPIGE 170 (220)
Q Consensus 147 iv~dNv~~~g------~~~---~~~s~~lPig~ 170 (220)
||+|+-..+| .|+ ++..-+.+|..
T Consensus 208 Ii~DDY~~~gcr~AvdeF~~~~gi~~~l~~id~ 240 (248)
T PF05711_consen 208 IIFDDYGHPGCRKAVDEFRAEHGITDPLHPIDW 240 (248)
T ss_dssp EEESSTTTHHHHHHHHHHHHHTT--S--EE-SS
T ss_pred EEEeCCCChHHHHHHHHHHHHcCCCCccEEecC
Confidence 9999977755 233 55555666644
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.5e-05 Score=64.62 Aligned_cols=119 Identities=14% Similarity=0.039 Sum_probs=79.8
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc------------cc
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG------------RY 91 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~------------g~ 91 (220)
..|-..+++..+.. .+..+||..||| -|.-.+|||.. |-+|++||.+ +.+++.+.+... ..
T Consensus 28 pnp~L~~~~~~l~~-~~~~rvLvPgCG-kg~D~~~LA~~----G~~V~GvDlS-~~Ai~~~~~e~~~~~~~~~~~~~~~~ 100 (226)
T PRK13256 28 PNEFLVKHFSKLNI-NDSSVCLIPMCG-CSIDMLFFLSK----GVKVIGIELS-EKAVLSFFSQNTINYEVIHGNDYKLY 100 (226)
T ss_pred CCHHHHHHHHhcCC-CCCCeEEEeCCC-ChHHHHHHHhC----CCcEEEEecC-HHHHHHHHHHcCCCcceeccccccee
Confidence 34444455554432 245799999997 99999999973 6789999999 999988755210 01
Q ss_pred -CCcEEEEEcchhhhhh--hcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 92 -ANCIEFVKGDAQKLLM--GDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 92 -~~~Ve~v~gda~~~L~--~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
...|++++||..++-+ ...++||+|+-=+-- +...=.+|.+.+... |+| ||.++.-..
T Consensus 101 ~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~l--L~p-gg~llll~~ 164 (226)
T PRK13256 101 KGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEV--CSN-NTQILLLVM 164 (226)
T ss_pred ccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHH--hCC-CcEEEEEEE
Confidence 2469999999988532 224679997621111 113346788888887 766 777665543
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.1e-05 Score=63.50 Aligned_cols=97 Identities=7% Similarity=0.052 Sum_probs=76.3
Q ss_pred CCCCCChhHH-HHHHHHHhhCC---CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcE
Q 042616 20 GKRGKEPDVG-EFISALAAGNN---AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCI 95 (220)
Q Consensus 20 ~~~~~~p~~~-~~L~~La~~~~---a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~V 95 (220)
.|....|+.| ..++.+-.... .+.+.++||| +|..+ ++.+++. ...|+++|+| |++++.+++|.+.++-++
T Consensus 24 EQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcg-cGmLs--~a~sm~~-~e~vlGfDId-peALEIf~rNaeEfEvqi 98 (185)
T KOG3420|consen 24 EQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCG-CGMLS--IAFSMPK-NESVLGFDID-PEALEIFTRNAEEFEVQI 98 (185)
T ss_pred hhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCc-hhhhH--HHhhcCC-CceEEeeecC-HHHHHHHhhchHHhhhhh
Confidence 4567778775 56666655543 7999999996 89887 4555554 6789999999 999999999998554568
Q ss_pred EEEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 96 EFVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 96 e~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
++++.|..+..+. ..-||-+++|.+-
T Consensus 99 dlLqcdildle~~-~g~fDtaviNppF 124 (185)
T KOG3420|consen 99 DLLQCDILDLELK-GGIFDTAVINPPF 124 (185)
T ss_pred heeeeeccchhcc-CCeEeeEEecCCC
Confidence 9999999887655 4779999999876
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.1e-05 Score=70.01 Aligned_cols=75 Identities=12% Similarity=0.159 Sum_probs=63.6
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh-hhhcCCCcc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL-LMGDYRGAD 114 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~-L~~~~~~~D 114 (220)
..+.+.|||+||| +|..+++-|+|. ..+|++||.+ +.++.|++.+. ++++.|+++.|..+++ || .+..|
T Consensus 58 lf~dK~VlDVGcG-tGILS~F~akAG---A~~V~aVe~S--~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP--~eKVD 129 (346)
T KOG1499|consen 58 LFKDKTVLDVGCG-TGILSMFAAKAG---ARKVYAVEAS--SIADFARKIVKDNGLEDVITVIKGKVEDIELP--VEKVD 129 (346)
T ss_pred hcCCCEEEEcCCC-ccHHHHHHHHhC---cceEEEEech--HHHHHHHHHHHhcCccceEEEeecceEEEecC--cccee
Confidence 5678999999997 999999999985 3599999998 77799999887 7888899999999886 33 47899
Q ss_pred EEEEcC
Q 042616 115 FVLIDC 120 (220)
Q Consensus 115 ~VfiD~ 120 (220)
.|+-..
T Consensus 130 iIvSEW 135 (346)
T KOG1499|consen 130 IIVSEW 135 (346)
T ss_pred EEeehh
Confidence 998554
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00011 Score=65.79 Aligned_cols=89 Identities=13% Similarity=0.163 Sum_probs=68.1
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhh
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~ 108 (220)
-+.|..| ...+...+||. |.|.|-=|..|+.+++ .|+|+++|.| +.+++.|++.++.+.+++++++++..++...
T Consensus 10 ~Evl~~L-~~~~ggiyVD~-TlG~GGHS~~iL~~l~--~g~vigiD~D-~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~ 84 (305)
T TIGR00006 10 DEVVEGL-NIKPDGIYIDC-TLGFGGHSKAILEQLG--TGRLIGIDRD-PQAIAFAKERLSDFEGRVVLIHDNFANFFEH 84 (305)
T ss_pred HHHHHhc-CcCCCCEEEEe-CCCChHHHHHHHHhCC--CCEEEEEcCC-HHHHHHHHHHHhhcCCcEEEEeCCHHHHHHH
Confidence 3555555 34556788994 5336667777887775 3999999999 9999999999886667899999998876533
Q ss_pred c----CCCccEEEEcCCC
Q 042616 109 D----YRGADFVLIDCNI 122 (220)
Q Consensus 109 ~----~~~~D~VfiD~~k 122 (220)
+ ..++|.|++|-..
T Consensus 85 l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 85 LDELLVTKIDGILVDLGV 102 (305)
T ss_pred HHhcCCCcccEEEEeccC
Confidence 3 2579999999877
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.4e-05 Score=65.14 Aligned_cols=119 Identities=18% Similarity=0.121 Sum_probs=78.7
Q ss_pred HHHHHHHHhh-----CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcch
Q 042616 29 GEFISALAAG-----NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDA 102 (220)
Q Consensus 29 ~~~L~~La~~-----~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda 102 (220)
-.||..|... .+..+.||.|+| +|-.|-.|.. +.-.+|.-||+. +.+++.|++.+. +.....++.+-..
T Consensus 39 ~~FL~~l~~~~~~~~~~~~~alDcGAG-IGRVTk~lLl---~~f~~VDlVEp~-~~Fl~~a~~~l~~~~~~v~~~~~~gL 113 (218)
T PF05891_consen 39 RNFLKKLKRGRKPGKPKFNRALDCGAG-IGRVTKGLLL---PVFDEVDLVEPV-EKFLEQAKEYLGKDNPRVGEFYCVGL 113 (218)
T ss_dssp HHHHHCCCT---------SEEEEET-T-TTHHHHHTCC---CC-SEEEEEES--HHHHHHHHHHTCCGGCCEEEEEES-G
T ss_pred HHHHHHHHhhcccCCCCcceEEecccc-cchhHHHHHH---HhcCEeEEeccC-HHHHHHHHHHhcccCCCcceEEecCH
Confidence 3566655444 356899999996 9999986653 236799999999 999999999987 3334468888888
Q ss_pred hhhhhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEE-ecCCCCC
Q 042616 103 QKLLMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVG-YNALPKG 156 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~-dNv~~~g 156 (220)
+++-|. ...||+|.+=.-. .-.+..++|+.++.. |+| ||+||+ +|+...+
T Consensus 114 Q~f~P~-~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~--L~~-~G~IvvKEN~~~~~ 167 (218)
T PF05891_consen 114 QDFTPE-EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQA--LKP-NGVIVVKENVSSSG 167 (218)
T ss_dssp GG-----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHH--EEE-EEEEEEEEEEESSS
T ss_pred hhccCC-CCcEeEEEehHhhccCCHHHHHHHHHHHHHh--CcC-CcEEEEEecCCCCC
Confidence 998876 5689999875432 114678899999999 987 566554 5665544
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00022 Score=58.76 Aligned_cols=114 Identities=10% Similarity=0.005 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh
Q 042616 26 PDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL 105 (220)
Q Consensus 26 p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~ 105 (220)
+-.|+.+...+.-..+.-|||+|.| +|..|-++.+-..+ ...+++||.+ ++++..-.+.+. -+.+++|||.+.
T Consensus 34 s~lA~~M~s~I~pesglpVlElGPG-TGV~TkaIL~~gv~-~~~L~~iE~~-~dF~~~L~~~~p----~~~ii~gda~~l 106 (194)
T COG3963 34 SILARKMASVIDPESGLPVLELGPG-TGVITKAILSRGVR-PESLTAIEYS-PDFVCHLNQLYP----GVNIINGDAFDL 106 (194)
T ss_pred HHHHHHHHhccCcccCCeeEEEcCC-ccHhHHHHHhcCCC-ccceEEEEeC-HHHHHHHHHhCC----CccccccchhhH
Confidence 3446666666666777899999996 99999986654443 6889999999 999988777764 355999999764
Q ss_pred h---hhc-CCCccEEEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 106 L---MGD-YRGADFVLIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 106 L---~~~-~~~~D~VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
- ... ...||.|+-.-+..+ ..-..+++.+... |.+ ||.+|-
T Consensus 107 ~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~r--l~~-gg~lvq 154 (194)
T COG3963 107 RTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYR--LPA-GGPLVQ 154 (194)
T ss_pred HHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHh--cCC-CCeEEE
Confidence 3 221 346999987766511 2336778888888 765 665543
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00031 Score=64.35 Aligned_cols=134 Identities=17% Similarity=0.204 Sum_probs=93.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHh--c----c-c-CCcEEEEEcchhhhhhhcC
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSL--G----R-Y-ANCIEFVKGDAQKLLMGDY 110 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l--~----g-~-~~~Ve~v~gda~~~L~~~~ 110 (220)
.+++++|-+|. +-|...--|.+ -|+ -++++-||.| |++++.++.+. . + + ..+++++..||.+.+....
T Consensus 288 ~~a~~vLvlGG-GDGLAlRellk-yP~-~~qI~lVdLD-P~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~ 363 (508)
T COG4262 288 RGARSVLVLGG-GDGLALRELLK-YPQ-VEQITLVDLD-PRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA 363 (508)
T ss_pred cccceEEEEcC-CchHHHHHHHh-CCC-cceEEEEecC-HHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc
Confidence 57899999995 47765544554 233 6899999999 99999999543 2 2 2 3569999999999998766
Q ss_pred CCccEEEEcCCCCC-----ccH-HHHHHHHHhhcCCCCCCEEEEEecCC--C-CC-Ccc--------ceE----EEeee-
Q 042616 111 RGADFVLIDCNIDI-----DGH-KNVFRAAKESVMHGSGAGVIVGYNAL--P-KG-SWR--------GYK----THFLP- 167 (220)
Q Consensus 111 ~~~D~VfiD~~k~~-----~~y-~~~l~~l~~~~~L~~~Ggviv~dNv~--~-~g-~~~--------~~~----s~~lP- 167 (220)
+.||+|++|-+.++ +.| .+.+..+.++ |++ +|++|+.--. + +. -|+ ++. .+.+|
T Consensus 364 ~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~--l~e-~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPT 440 (508)
T COG4262 364 DMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRH--LAE-TGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPT 440 (508)
T ss_pred ccccEEEEeCCCCCCcchhhhhhHHHHHHHHHh--cCc-CceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCc
Confidence 79999999976522 345 6778888888 875 8887775332 2 22 354 221 23344
Q ss_pred cCC-cEEEEEEee
Q 042616 168 IGE-GLLVTRIGE 179 (220)
Q Consensus 168 ig~-Gl~v~~~~~ 179 (220)
+|+ |+.++....
T Consensus 441 FGeWGf~l~~~~~ 453 (508)
T COG4262 441 FGEWGFILAAPGD 453 (508)
T ss_pred ccccceeeccccc
Confidence 566 888887753
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0008 Score=57.69 Aligned_cols=143 Identities=11% Similarity=-0.010 Sum_probs=96.7
Q ss_pred CCChhhhHHHHHHH-----Hhc-CCCCCCh---hHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEE
Q 042616 3 SWSSENATKAYLQA-----LKM-GKRGKEP---DVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCI 73 (220)
Q Consensus 3 ~w~~e~a~~aY~~~-----l~~-~~~~~~p---~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tI 73 (220)
.|+.+.+.+.|+.+ ++. ++..+.. ...+.++.. ...+..+||++|= +.|...-.+-++ ++ -+.+-|
T Consensus 56 ~~~~a~~~qd~ls~~~D~ll~~~~k~VMm~WEtpiMha~A~a-i~tkggrvLnVGF-GMgIidT~iQe~-~p--~~H~Ii 130 (271)
T KOG1709|consen 56 ADGNAPYLQDYLSTAEDTLLDSLGKGVMMRWETPIMHALAEA-ISTKGGRVLNVGF-GMGIIDTFIQEA-PP--DEHWII 130 (271)
T ss_pred ccccchHHHHHHhhhhhHHHhhccchhhhhhhhHHHHHHHHH-HhhCCceEEEecc-chHHHHHHHhhc-CC--cceEEE
Confidence 46667777776555 222 2222221 122223222 2378899999995 478776666554 33 588889
Q ss_pred eCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHH---HHHHHHHhhcCCCCCCEEEEE
Q 042616 74 LSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHK---NVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 74 E~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~---~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|.+ |..++.-|..-=.-.++|-++.|--++.++.+ .+.||=|+-|.-. +.|. +..+.+.++ |+| +|++-.
T Consensus 131 E~h-p~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~--e~yEdl~~~hqh~~rL--LkP-~gv~Sy 204 (271)
T KOG1709|consen 131 EAH-PDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS--ELYEDLRHFHQHVVRL--LKP-EGVFSY 204 (271)
T ss_pred ecC-HHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh--hHHHHHHHHHHHHhhh--cCC-CceEEE
Confidence 999 99887766653234578999999999999887 4679999999986 5554 456667777 876 898888
Q ss_pred ecCCCCC
Q 042616 150 YNALPKG 156 (220)
Q Consensus 150 dNv~~~g 156 (220)
=|-+..+
T Consensus 205 fNg~~~~ 211 (271)
T KOG1709|consen 205 FNGLGAD 211 (271)
T ss_pred ecCcccc
Confidence 7777644
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.4e-05 Score=65.16 Aligned_cols=108 Identities=16% Similarity=0.147 Sum_probs=78.8
Q ss_pred CCC-CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEE
Q 042616 20 GKR-GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFV 98 (220)
Q Consensus 20 ~~~-~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v 98 (220)
+|. .+.+..++-+...+...+...|||||.| .|..|-.|+.. +.+|++||.| +..++..++.+. ...+++++
T Consensus 9 gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG-~G~lT~~L~~~----~~~v~~vE~d-~~~~~~L~~~~~-~~~~~~vi 81 (262)
T PF00398_consen 9 GQNFLVDPNIADKIVDALDLSEGDTVLEIGPG-PGALTRELLKR----GKRVIAVEID-PDLAKHLKERFA-SNPNVEVI 81 (262)
T ss_dssp TSSEEEHHHHHHHHHHHHTCGTTSEEEEESST-TSCCHHHHHHH----SSEEEEEESS-HHHHHHHHHHCT-TCSSEEEE
T ss_pred CcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCC-CccchhhHhcc----cCcceeecCc-HhHHHHHHHHhh-hcccceee
Confidence 454 4578888888888888889999999996 99999999986 4799999999 999998888776 23689999
Q ss_pred Ecchhhhhhhc--CCCccEEEEcCCCCCccHHHHHHHHHh
Q 042616 99 KGDAQKLLMGD--YRGADFVLIDCNIDIDGHKNVFRAAKE 136 (220)
Q Consensus 99 ~gda~~~L~~~--~~~~D~VfiD~~k~~~~y~~~l~~l~~ 136 (220)
++|+.++-... ......||-.-+- .....++..+..
T Consensus 82 ~~D~l~~~~~~~~~~~~~~vv~NlPy--~is~~il~~ll~ 119 (262)
T PF00398_consen 82 NGDFLKWDLYDLLKNQPLLVVGNLPY--NISSPILRKLLE 119 (262)
T ss_dssp ES-TTTSCGGGHCSSSEEEEEEEETG--TGHHHHHHHHHH
T ss_pred ecchhccccHHhhcCCceEEEEEecc--cchHHHHHHHhh
Confidence 99998753221 1233344433332 444566666665
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0002 Score=60.12 Aligned_cols=99 Identities=9% Similarity=0.021 Sum_probs=72.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVL 117 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~Vf 117 (220)
.+..+|||+||| .|..-.+|... .+-+.++||.| ++.+..+.+ .-+.++++|+.+.|+.. .++||+|+
T Consensus 12 ~pgsrVLDLGCG-dG~LL~~L~~~---k~v~g~GvEid-~~~v~~cv~------rGv~Viq~Dld~gL~~f~d~sFD~VI 80 (193)
T PF07021_consen 12 EPGSRVLDLGCG-DGELLAYLKDE---KQVDGYGVEID-PDNVAACVA------RGVSVIQGDLDEGLADFPDQSFDYVI 80 (193)
T ss_pred CCCCEEEecCCC-chHHHHHHHHh---cCCeEEEEecC-HHHHHHHHH------cCCCEEECCHHHhHhhCCCCCccEEe
Confidence 346899999997 89876666653 26789999999 877655544 23679999999988755 47899999
Q ss_pred EcCCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 118 IDCNIDI-DGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 118 iD~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+--.-.. .+...+++.+.+.| +-++|-+.|-
T Consensus 81 lsqtLQ~~~~P~~vL~EmlRVg----r~~IVsFPNF 112 (193)
T PF07021_consen 81 LSQTLQAVRRPDEVLEEMLRVG----RRAIVSFPNF 112 (193)
T ss_pred hHhHHHhHhHHHHHHHHHHHhc----CeEEEEecCh
Confidence 8765511 23466777777762 4788888887
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00016 Score=65.66 Aligned_cols=75 Identities=9% Similarity=0.128 Sum_probs=62.6
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
..+.+.|||+|+| +|..+...|.|. ..+|++||.+ +++++||+.++ .+.++|.++.|..+++ ++.++.|+
T Consensus 175 DF~~kiVlDVGaG-SGILS~FAaqAG---A~~vYAvEAS--~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eLPEk~Dv 246 (517)
T KOG1500|consen 175 DFQDKIVLDVGAG-SGILSFFAAQAG---AKKVYAVEAS--EMAQYARKLVASNNLADRITVIPGKIEDI--ELPEKVDV 246 (517)
T ss_pred ccCCcEEEEecCC-ccHHHHHHHHhC---cceEEEEehh--HHHHHHHHHHhcCCccceEEEccCccccc--cCchhccE
Confidence 3456889999997 899998888774 3689999998 99999999998 5689999999999985 34578999
Q ss_pred EEEcC
Q 042616 116 VLIDC 120 (220)
Q Consensus 116 VfiD~ 120 (220)
|+-..
T Consensus 247 iISEP 251 (517)
T KOG1500|consen 247 IISEP 251 (517)
T ss_pred EEecc
Confidence 88654
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0004 Score=61.78 Aligned_cols=126 Identities=9% Similarity=0.039 Sum_probs=89.7
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
.+.....+-+..|.+..+|-+||||-|| .|---+-.....+...-.|.-.|.+ +..++..++.++ |+.+.++|.++
T Consensus 118 ~l~~~i~~ai~~L~~~g~pvrIlDIAaG-~GRYvlDal~~~~~~~~~i~LrDys-~~Nv~~g~~li~~~gL~~i~~f~~~ 195 (311)
T PF12147_consen 118 HLEELIRQAIARLREQGRPVRILDIAAG-HGRYVLDALEKHPERPDSILLRDYS-PINVEKGRALIAERGLEDIARFEQG 195 (311)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeccC-CcHHHHHHHHhCCCCCceEEEEeCC-HHHHHHHHHHHHHcCCccceEEEec
Confidence 3444445555666667789999999886 6765554333333323588999999 999999999997 89777899999
Q ss_pred chhhh--hhhcCCCccEEEEcCCCCCccH------HHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 DAQKL--LMGDYRGADFVLIDCNIDIDGH------KNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 da~~~--L~~~~~~~D~VfiD~~k~~~~y------~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
||.+. +..+....+++++-+-- +.+ .+-+.-+... +. +||++|.-|--||
T Consensus 196 dAfd~~~l~~l~p~P~l~iVsGL~--ElF~Dn~lv~~sl~gl~~a--l~-pgG~lIyTgQPwH 253 (311)
T PF12147_consen 196 DAFDRDSLAALDPAPTLAIVSGLY--ELFPDNDLVRRSLAGLARA--LE-PGGYLIYTGQPWH 253 (311)
T ss_pred CCCCHhHhhccCCCCCEEEEecch--hhCCcHHHHHHHHHHHHHH--hC-CCcEEEEcCCCCC
Confidence 99764 44445668999987765 333 3345666666 65 5999998876554
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0002 Score=57.85 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=59.0
Q ss_pred EEEeCCchhHHHHHHHHhc--c--cCCcEEEEEcchhhhhhhcCCCccEEEEcCCCC-CccHHHHHHHHHhhcCCCCCCE
Q 042616 71 VCILSGVIGDIDASKKSLG--R--YANCIEFVKGDAQKLLMGDYRGADFVLIDCNID-IDGHKNVFRAAKESVMHGSGAG 145 (220)
Q Consensus 71 ~tIE~d~~~~~~~Ar~~l~--g--~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~-~~~y~~~l~~l~~~~~L~~~Gg 145 (220)
+++|++ +++++.|++..+ . ...+|+++++|+.+ +|...++||+|++....+ -.+....++.+.+. |+| ||
T Consensus 1 ~GvD~S-~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rv--Lkp-GG 75 (160)
T PLN02232 1 MGLDFS-SEQLAVAATRQSLKARSCYKCIEWIEGDAID-LPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRV--LKP-GS 75 (160)
T ss_pred CeEcCC-HHHHHHHHHhhhcccccCCCceEEEEechhh-CCCCCCCeeEEEecchhhcCCCHHHHHHHHHHH--cCc-Ce
Confidence 479999 999999987654 2 23579999999987 454356899999876441 14678889999998 887 77
Q ss_pred EEEEecCCC
Q 042616 146 VIVGYNALP 154 (220)
Q Consensus 146 viv~dNv~~ 154 (220)
.+++.+...
T Consensus 76 ~l~i~d~~~ 84 (160)
T PLN02232 76 RVSILDFNK 84 (160)
T ss_pred EEEEEECCC
Confidence 776655543
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00011 Score=57.32 Aligned_cols=55 Identities=7% Similarity=0.131 Sum_probs=44.4
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcch
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDA 102 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda 102 (220)
.+||+||+ .|+.+++++...+ .++++++|++ |..++.++++++ ++ .++++++...
T Consensus 1 ~vlDiGa~-~G~~~~~~~~~~~--~~~v~~~E~~-~~~~~~l~~~~~~n~~-~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGAN-IGDTSLYFARKGA--EGRVIAFEPL-PDAYEILEENVKLNNL-PNVVLLNAAV 57 (143)
T ss_pred CEEEccCC-ccHHHHHHHHhCC--CCEEEEEecC-HHHHHHHHHHHHHcCC-CcEEEEEeee
Confidence 37999996 9999999998754 4699999999 999999999986 44 3466666443
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=8.3e-05 Score=64.41 Aligned_cols=107 Identities=15% Similarity=0.106 Sum_probs=72.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh-hhhhhc--CCCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ-KLLMGD--YRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~-~~L~~~--~~~~D~ 115 (220)
..+..||||||| +|-+...|.+..+.++-+|+|.|.+ |.+++..+++-.-...++.--+-|.. +.++.- .+++|+
T Consensus 70 ~~~~~ilEvGCG-vGNtvfPll~~~~n~~l~v~acDfs-p~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~ 147 (264)
T KOG2361|consen 70 KSAETILEVGCG-VGNTVFPLLKTSPNNRLKVYACDFS-PRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDI 147 (264)
T ss_pred cChhhheeeccC-CCcccchhhhcCCCCCeEEEEcCCC-hHHHHHHHhccccchhhhcccceeccchhccCCCCcCccce
Confidence 345689999997 9998888888776656899999999 99999999887622244433333321 112111 367886
Q ss_pred E---EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 116 V---LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 116 V---fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
| |+=.....+.....++.+.+. |+| ||.|++-
T Consensus 148 it~IFvLSAi~pek~~~a~~nl~~l--lKP-GG~llfr 182 (264)
T KOG2361|consen 148 ITLIFVLSAIHPEKMQSVIKNLRTL--LKP-GGSLLFR 182 (264)
T ss_pred EEEEEEEeccChHHHHHHHHHHHHH--hCC-CcEEEEe
Confidence 5 322222236788899999998 987 6666654
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00048 Score=54.51 Aligned_cols=77 Identities=18% Similarity=0.169 Sum_probs=59.6
Q ss_pred HHHHHHHHHhh----CCCCEEEEEcCCchHHHHHHHHHHcC--CCCcEEEEEeCCchhHHHHHHHHhc--c--cCCcEEE
Q 042616 28 VGEFISALAAG----NNAQLIVMACSSIAVSRTLALVAAAR--QTGGRVVCILSGVIGDIDASKKSLG--R--YANCIEF 97 (220)
Q Consensus 28 ~~~~L~~La~~----~~a~~ILEIGtg~~G~sTl~LA~A~~--~~~grV~tIE~d~~~~~~~Ar~~l~--g--~~~~Ve~ 97 (220)
.++++..++.. .+...|+|+|+| -||.+..|+..++ ..+-+|++||.+ ++..+.|.+..+ + +..++++
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~vvD~GsG-~GyLs~~La~~l~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~~~~~~ 86 (141)
T PF13679_consen 9 MAELIDSLCDSVGESKRCITVVDLGSG-KGYLSRALAHLLCNSSPNLRVLGIDCN-ESLVESAQKRAQKLGSDLEKRLSF 86 (141)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCC-hhHHHHHHHHHHHhcCCCCeEEEEECC-cHHHHHHHHHHHHhcchhhccchh
Confidence 46677777666 889999999986 9999999998432 136899999999 999988888776 3 4456788
Q ss_pred EEcchhhhh
Q 042616 98 VKGDAQKLL 106 (220)
Q Consensus 98 v~gda~~~L 106 (220)
..++..+..
T Consensus 87 ~~~~~~~~~ 95 (141)
T PF13679_consen 87 IQGDIADES 95 (141)
T ss_pred hccchhhhc
Confidence 887766543
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00018 Score=56.83 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+.+.|++||++ +|.|+|+++..- ..+|+++|++ +...+..+++++ ..=++..... ..+...++||..
T Consensus 27 vk~KtV~dIGA~-iGdSaiYF~l~G---AK~Vva~E~~-~kl~k~~een~k~nnI~DK~v~~~-----eW~~~Y~~~Di~ 96 (156)
T PHA01634 27 VYQRTIQIVGAD-CGSSALYFLLRG---ASFVVQYEKE-EKLRKKWEEVCAYFNICDKAVMKG-----EWNGEYEDVDIF 96 (156)
T ss_pred ecCCEEEEecCC-ccchhhHHhhcC---ccEEEEeccC-HHHHHHHHHHhhhheeeeceeecc-----cccccCCCcceE
Confidence 356999999985 999999988752 3589999999 999999999887 2213322222 233446899999
Q ss_pred EEcCCC
Q 042616 117 LIDCNI 122 (220)
Q Consensus 117 fiD~~k 122 (220)
.+||.-
T Consensus 97 ~iDCeG 102 (156)
T PHA01634 97 VMDCEG 102 (156)
T ss_pred EEEccc
Confidence 999975
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00093 Score=65.45 Aligned_cols=109 Identities=14% Similarity=0.004 Sum_probs=73.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcC------C--CC--cEEEEEeCCchhH--------------HHHHHHHhc-----
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAAR------Q--TG--GRVVCILSGVIGD--------------IDASKKSLG----- 89 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~------~--~~--grV~tIE~d~~~~--------------~~~Ar~~l~----- 89 (220)
.+.-+|+|+|= |+|+.++.+.++.. + .. =+++++|.+ |-. .+.+++.++
T Consensus 56 ~~~~~i~e~gf-G~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~-p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (662)
T PRK01747 56 RRRFVIAETGF-GTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKF-PLTRADLARAHQHWPELAPLAEQLQAQWPLL 133 (662)
T ss_pred CCcEEEEecCc-chHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECC-CCCHHHHHHHHhhCcccHHHHHHHHHhCCcc
Confidence 34468999995 59999998776661 1 11 267999987 522 222222221
Q ss_pred --cc------CC--cEEEEEcchhhhhhhcCCCccEEEEcCCC--CCcc--HHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 90 --RY------AN--CIEFVKGDAQKLLMGDYRGADFVLIDCNI--DIDG--HKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 90 --g~------~~--~Ve~v~gda~~~L~~~~~~~D~VfiD~~k--~~~~--y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+ .+ ++++..||+.+.++++...+|.+|+|+-. .+.+ -.++|..+.++ +++ ||+++.+-+
T Consensus 134 ~~g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~--~~~-~~~~~t~t~ 207 (662)
T PRK01747 134 LPGCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARL--ARP-GATLATFTS 207 (662)
T ss_pred CCCceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHH--hCC-CCEEEEeeh
Confidence 11 12 35688899999998876779999999633 1222 27889999998 765 999998743
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0011 Score=63.20 Aligned_cols=102 Identities=8% Similarity=-0.002 Sum_probs=73.7
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CCCcc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YRGAD 114 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~~~D 114 (220)
..+...+|||||| .|-+++.+|..-| +-.+++||.. ...+..|.+... ++ .|+.++.+|+..+...+ .+++|
T Consensus 345 ~~~~p~~lEIG~G-~G~~~~~~A~~~p--~~~~iGiE~~-~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~ 419 (506)
T PRK01544 345 NEKRKVFLEIGFG-MGEHFINQAKMNP--DALFIGVEVY-LNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLD 419 (506)
T ss_pred CCCCceEEEECCC-chHHHHHHHHhCC--CCCEEEEEee-HHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCccccc
Confidence 3456789999997 8999999998765 5789999999 666655555443 66 68999999987655333 25688
Q ss_pred EEEEc---CCC------CCccHHHHHHHHHhhcCCCCCCEEE
Q 042616 115 FVLID---CNI------DIDGHKNVFRAAKESVMHGSGAGVI 147 (220)
Q Consensus 115 ~VfiD---~~k------~~~~y~~~l~~l~~~~~L~~~Ggvi 147 (220)
-|+|- ++. ++--....++.+.+. |+| ||.|
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~--Lk~-gG~i 458 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDK--LKD-NGNL 458 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHh--cCC-CCEE
Confidence 88775 431 112337788899988 876 6654
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=2.8e-05 Score=67.07 Aligned_cols=114 Identities=11% Similarity=0.032 Sum_probs=76.8
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA 102 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda 102 (220)
.++...++.|..+..+ +-+++||+||| ||.+...|-. ...+++.||++ +.+++.|.+. ++ .=++.++|+
T Consensus 109 ~vP~~l~emI~~~~~g-~F~~~lDLGCG-TGL~G~~lR~----~a~~ltGvDiS-~nMl~kA~eK--g~--YD~L~~Aea 177 (287)
T COG4976 109 SVPELLAEMIGKADLG-PFRRMLDLGCG-TGLTGEALRD----MADRLTGVDIS-ENMLAKAHEK--GL--YDTLYVAEA 177 (287)
T ss_pred ccHHHHHHHHHhccCC-ccceeeecccC-cCcccHhHHH----HHhhccCCchh-HHHHHHHHhc--cc--hHHHHHHHH
Confidence 4444455666555333 37899999997 9988876543 35699999999 9999887763 22 235677888
Q ss_pred hhhhhhc-CCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 103 QKLLMGD-YRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 103 ~~~L~~~-~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..+++.. .++||+|.----. .-+....+|-.+..+ |.| ||++.+-
T Consensus 178 ~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~--L~~-gGlfaFS 224 (287)
T COG4976 178 VLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGL--LAP-GGLFAFS 224 (287)
T ss_pred HHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHh--cCC-CceEEEE
Confidence 8888644 5789999732111 114445666667777 765 9988774
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00073 Score=57.28 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=70.1
Q ss_pred EEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCC
Q 042616 44 IVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCN 121 (220)
Q Consensus 44 ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~ 121 (220)
|.||||- -||..++|.+.-. ..+++++|.+ +.-++.|+++++ ++.++|+++.||..+.++. .+..|.|+|-+=
T Consensus 1 vaDIGtD-HgyLpi~L~~~~~--~~~~ia~DI~-~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTD-HGYLPIYLLKNGK--APKAIAVDIN-PGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-S-TTHHHHHHHHTTS--EEEEEEEESS-HHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEEEEE
T ss_pred Cceeccc-hhHHHHHHHhcCC--CCEEEEEeCC-HHHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEEecC
Confidence 6899994 8999999998532 4689999999 999999999998 8889999999999988854 234899998764
Q ss_pred CCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 122 IDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 122 k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
- .....++++..... +.+..-+|+.-|.
T Consensus 76 G-G~lI~~ILe~~~~~--~~~~~~lILqP~~ 103 (205)
T PF04816_consen 76 G-GELIIEILEAGPEK--LSSAKRLILQPNT 103 (205)
T ss_dssp --HHHHHHHHHHTGGG--GTT--EEEEEESS
T ss_pred C-HHHHHHHHHhhHHH--hccCCeEEEeCCC
Confidence 4 13447777777665 4332346666654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00082 Score=66.56 Aligned_cols=97 Identities=11% Similarity=-0.001 Sum_probs=70.2
Q ss_pred CChhHHHHHHHHHhh-CCCCEEEEEcCCchHHHHHHHHHHcC--------------------------------------
Q 042616 24 KEPDVGEFISALAAG-NNAQLIVMACSSIAVSRTLALVAAAR-------------------------------------- 64 (220)
Q Consensus 24 ~~p~~~~~L~~La~~-~~a~~ILEIGtg~~G~sTl~LA~A~~-------------------------------------- 64 (220)
+.+..|.-|-.++.- .+...++|-.|| +|...+-.|..+.
T Consensus 173 l~etlAaa~l~~a~w~~~~~~l~DP~CG-SGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 173 LKENLAAAILLRSGWPQEGTPLLDPMCG-SGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred CcHHHHHHHHHHcCCCCCCCeEEccCCC-ccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 445555544455433 346789999997 7887775544211
Q ss_pred --CCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCC
Q 042616 65 --QTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNI 122 (220)
Q Consensus 65 --~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k 122 (220)
....+++++|.| +.+++.|++|+. |+.+.|++.++|+.++.+.. .+.+|+|+.+.+-
T Consensus 252 ~~~~~~~i~G~Did-~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPY 313 (702)
T PRK11783 252 LAELPSKFYGSDID-PRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPY 313 (702)
T ss_pred ccccCceEEEEECC-HHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCC
Confidence 112479999999 999999999997 88788999999998864321 2469999999764
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0015 Score=55.37 Aligned_cols=120 Identities=11% Similarity=-0.003 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---------cc-CCcEEE
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---------RY-ANCIEF 97 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---------g~-~~~Ve~ 97 (220)
..+++. .+...+....+|||+| .|-..+..|.-. . ..+.++||.. +...+.|+.+.+ |. ..++++
T Consensus 31 ~~~il~-~~~l~~~dvF~DlGSG-~G~~v~~aal~~-~-~~~~~GIEi~-~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 31 VSKILD-ELNLTPDDVFYDLGSG-VGNVVFQAALQT-G-CKKSVGIEIL-PELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp HHHHHH-HTT--TT-EEEEES-T-TSHHHHHHHHHH----SEEEEEE-S-HHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred HHHHHH-HhCCCCCCEEEECCCC-CCHHHHHHHHHc-C-CcEEEEEEec-hHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 344443 3456667888999996 898766555332 2 5679999999 999988876553 22 256899
Q ss_pred EEcchhhh--hhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 98 VKGDAQKL--LMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 98 v~gda~~~--L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
.+||..+. ...+....|+||++...=.+.....+...... ++ +|..||.---+.+
T Consensus 106 ~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~--lk-~G~~IIs~~~~~~ 162 (205)
T PF08123_consen 106 IHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLE--LK-PGARIISTKPFCP 162 (205)
T ss_dssp ECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTT--S--TT-EEEESS-SS-
T ss_pred eccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhc--CC-CCCEEEECCCcCC
Confidence 99997542 33323467999998765112222223333344 54 5999998544433
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0008 Score=62.04 Aligned_cols=104 Identities=14% Similarity=0.081 Sum_probs=76.5
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCC-cEEEEEcchhhhhhhcCCCccEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYAN-CIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~-~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
+-+|||.=+ ++|.=++..+.-++. ..+|+.-|.| +++.+..++|++ ++.+ ++++.+.||..+|......||+|=
T Consensus 50 ~~~~lDala-asGvR~iRy~~E~~~-~~~v~~NDi~-~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID 126 (377)
T PF02005_consen 50 PIRVLDALA-ASGVRGIRYAKELAG-VDKVTANDIS-PEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID 126 (377)
T ss_dssp -EEEEETT--TTSHHHHHHHHH-SS-ECEEEEEES--HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred CceEEeccc-cccHHHHHHHHHcCC-CCEEEEecCC-HHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEE
Confidence 448999654 589999998887553 5799999999 999999999987 7765 799999999999854457899999
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
||+- +....+++.+.+. ++ +||+|.+--+-
T Consensus 127 lDPf---GSp~pfldsA~~~--v~-~gGll~vTaTD 156 (377)
T PF02005_consen 127 LDPF---GSPAPFLDSALQA--VK-DGGLLCVTATD 156 (377)
T ss_dssp E--S---S--HHHHHHHHHH--EE-EEEEEEEEE--
T ss_pred eCCC---CCccHhHHHHHHH--hh-cCCEEEEeccc
Confidence 9986 4678899999998 76 59998876553
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00086 Score=60.26 Aligned_cols=88 Identities=20% Similarity=0.321 Sum_probs=57.4
Q ss_pred HHHHHHHHhhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--
Q 042616 29 GEFISALAAGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL-- 105 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~-- 105 (220)
-|.+..|. ..+...+|| || |+-|. |..+.++++ +++|+++|.| +++++.|++.++...+++.+++++..++
T Consensus 10 ~Evl~~L~-~~~~g~~vD-~T~G~GGH-S~aiL~~~~--~~~li~~DrD-~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~ 83 (310)
T PF01795_consen 10 KEVLEALN-PKPGGIYVD-CTFGGGGH-SKAILEKLP--NGRLIGIDRD-PEALERAKERLKKFDDRFIFIHGNFSNLDE 83 (310)
T ss_dssp HHHHHHHT---TT-EEEE-TT-TTSHH-HHHHHHT-T--T-EEEEEES--HHHHHHHHCCTCCCCTTEEEEES-GGGHHH
T ss_pred HHHHHhhC-cCCCceEEe-ecCCcHHH-HHHHHHhCC--CCeEEEecCC-HHHHHHHHHHHhhccceEEEEeccHHHHHH
Confidence 34555553 556677888 56 43355 555555665 3999999999 9999999999986678999999987654
Q ss_pred -hhhc--CCCccEEEEcCCC
Q 042616 106 -LMGD--YRGADFVLIDCNI 122 (220)
Q Consensus 106 -L~~~--~~~~D~VfiD~~k 122 (220)
+... ...+|.|++|-..
T Consensus 84 ~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 84 YLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp HHHHTTTTS-EEEEEEE-S-
T ss_pred HHHHccCCCccCEEEEcccc
Confidence 4333 2579999999887
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0029 Score=57.54 Aligned_cols=100 Identities=12% Similarity=0.067 Sum_probs=67.6
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
+...+.++|+-+|.|+.|-.++.+|.|+ +.+|++++.+ ++..+.|++.-. -.++.+.-.+.++.+.+.||+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~---ga~Via~~~~-~~K~e~a~~lGA-----d~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAM---GAEVIAITRS-EEKLELAKKLGA-----DHVINSSDSDALEAVKEIADA 232 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc---CCeEEEEeCC-hHHHHHHHHhCC-----cEEEEcCCchhhHHhHhhCcE
Confidence 3456679999999988999999999987 6899999999 999999998732 233332222222222234999
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+.-... ..+..+++.+ ++.|.++++=+.
T Consensus 233 ii~tv~~--~~~~~~l~~l------~~~G~~v~vG~~ 261 (339)
T COG1064 233 IIDTVGP--ATLEPSLKAL------RRGGTLVLVGLP 261 (339)
T ss_pred EEECCCh--hhHHHHHHHH------hcCCEEEEECCC
Confidence 9877664 4545444444 444555555444
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0011 Score=61.61 Aligned_cols=112 Identities=15% Similarity=0.105 Sum_probs=82.4
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CC
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YR 111 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~ 111 (220)
-.+..+..+|||.++ +.|-=|.++|.-+.. .|-|++-|.+ ..++...+.|+. |+ ++..+++.|..++-... .+
T Consensus 236 aL~Pq~gERIlDmcA-APGGKTt~IAalMkn-~G~I~AnD~n-~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~~ 311 (460)
T KOG1122|consen 236 ALDPQPGERILDMCA-APGGKTTHIAALMKN-TGVIFANDSN-ENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFPG 311 (460)
T ss_pred ecCCCCCCeecchhc-CCCchHHHHHHHHcC-CceEEecccc-hHHHHHHHHHHHHhCC-CceEEEccCcccccccccCc
Confidence 345667899999987 577788889976665 8999999999 999999999997 76 56778888887642122 34
Q ss_pred CccEEEEcCCCCC-------------------ccH----HHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 112 GADFVLIDCNIDI-------------------DGH----KNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 112 ~~D~VfiD~~k~~-------------------~~y----~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+||-|++|++-.. ..| .+.|..+..+ +++ ||+||.--..
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~l--v~~-GGvLVYSTCS 373 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDL--VKA-GGVLVYSTCS 373 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhh--ccC-CcEEEEEeee
Confidence 7999999987611 122 2344555565 776 9999876544
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00089 Score=57.88 Aligned_cols=75 Identities=19% Similarity=0.140 Sum_probs=48.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc------CCcEEEEEcchhhhhhhcCC
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY------ANCIEFVKGDAQKLLMGDYR 111 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~------~~~Ve~v~gda~~~L~~~~~ 111 (220)
.+|||.=+| .|.=++-||.. |++|+++|.+ |-.+...+.-++ .. ..+|+++++|+.++|+....
T Consensus 77 ~~VLDaTaG-LG~Da~vlA~~----G~~V~~lErs-pvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~ 150 (234)
T PF04445_consen 77 PSVLDATAG-LGRDAFVLASL----GCKVTGLERS-PVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDN 150 (234)
T ss_dssp --EEETT-T-TSHHHHHHHHH----T--EEEEE---HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS
T ss_pred CEEEECCCc-chHHHHHHHcc----CCeEEEEECC-HHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCC
Confidence 389996444 89988888853 7899999999 998877776553 11 14799999999999974357
Q ss_pred CccEEEEcCCC
Q 042616 112 GADFVLIDCNI 122 (220)
Q Consensus 112 ~~D~VfiD~~k 122 (220)
+||+|++|+=-
T Consensus 151 s~DVVY~DPMF 161 (234)
T PF04445_consen 151 SFDVVYFDPMF 161 (234)
T ss_dssp --SEEEE--S-
T ss_pred CCCEEEECCCC
Confidence 99999999743
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0027 Score=54.68 Aligned_cols=86 Identities=9% Similarity=0.049 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHH-HHHHhc--cc-CCcEEEEEcchhhhhhhcCCCccE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDA-SKKSLG--RY-ANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~-Ar~~l~--g~-~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
+.+.+||+||| +|++|.+|++. . .++|++||.+ +.++.. .+++.+ .+ ..+++ .-+.+++.+. ...+|+
T Consensus 75 ~~~~vlDiG~g-tG~~t~~l~~~-g--a~~v~avD~~-~~~l~~~l~~~~~v~~~~~~ni~--~~~~~~~~~d-~~~~Dv 146 (228)
T TIGR00478 75 KNKIVLDVGSS-TGGFTDCALQK-G--AKEVYGVDVG-YNQLAEKLRQDERVKVLERTNIR--YVTPADIFPD-FATFDV 146 (228)
T ss_pred CCCEEEEcccC-CCHHHHHHHHc-C--CCEEEEEeCC-HHHHHHHHhcCCCeeEeecCCcc--cCCHhHcCCC-ceeeeE
Confidence 56789999996 99999999985 1 4799999999 765543 444322 01 12233 2233333211 235666
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGS 142 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~ 142 (220)
+|+--. ..+..+... |++
T Consensus 147 sfiS~~-------~~l~~i~~~--l~~ 164 (228)
T TIGR00478 147 SFISLI-------SILPELDLL--LNP 164 (228)
T ss_pred EEeehH-------hHHHHHHHH--hCc
Confidence 664432 346666666 554
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0014 Score=56.44 Aligned_cols=97 Identities=10% Similarity=-0.010 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEE--
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVL-- 117 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vf-- 117 (220)
.+..||||||| +|.|+-.|... +=..+.+|++ |.+++.|.+ +.++ -.++.+|--+-||.-.+.||-++
T Consensus 50 ~~~~iLDIGCG-sGLSg~vL~~~----Gh~wiGvDiS-psML~~a~~--~e~e--gdlil~DMG~GlpfrpGtFDg~ISI 119 (270)
T KOG1541|consen 50 KSGLILDIGCG-SGLSGSVLSDS----GHQWIGVDIS-PSMLEQAVE--RELE--GDLILCDMGEGLPFRPGTFDGVISI 119 (270)
T ss_pred CCcEEEEeccC-CCcchheeccC----CceEEeecCC-HHHHHHHHH--hhhh--cCeeeeecCCCCCCCCCccceEEEe
Confidence 58999999997 99998876652 4356899999 999999986 2221 24677777777876668899886
Q ss_pred ------EcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 118 ------IDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 118 ------iD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
..+++.. .....+|..|... |++ |+--|+
T Consensus 120 SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~--l~r-g~raV~ 158 (270)
T KOG1541|consen 120 SAVQWLCNADKSLHVPKKRLLRFFGTLYSC--LKR-GARAVL 158 (270)
T ss_pred eeeeeecccCccccChHHHHHHHhhhhhhh--hcc-CceeEE
Confidence 2333311 2234456666666 654 665554
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0078 Score=51.58 Aligned_cols=114 Identities=15% Similarity=0.068 Sum_probs=84.8
Q ss_pred HHHHHhhCC-CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhh
Q 042616 32 ISALAAGNN-AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 32 L~~La~~~~-a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~ 108 (220)
|.++|...+ ...+.|||| --+|.+.+|..--+ ..++++.|.+ +..++.|.+++. ++.++|++..||....+ .
T Consensus 7 L~~va~~V~~~~~iaDIGs-DHAYLp~~Lv~~~~--~~~~va~eV~-~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l-~ 81 (226)
T COG2384 7 LTTVANLVKQGARIADIGS-DHAYLPIYLVKNNP--ASTAVAGEVV-PGPLESAIRNVKKNNLSERIDVRLGDGLAVL-E 81 (226)
T ss_pred HHHHHHHHHcCCceeeccC-chhHhHHHHHhcCC--cceEEEeecc-cCHHHHHHHHHHhcCCcceEEEeccCCcccc-C
Confidence 344444322 344999998 58999999997532 6899999999 999999999997 78899999999997766 3
Q ss_pred cCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 109 DYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 109 ~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
..+.+|.++|-+=- .....++++.-... |...--+|+..|..
T Consensus 82 ~~d~~d~ivIAGMG-G~lI~~ILee~~~~--l~~~~rlILQPn~~ 123 (226)
T COG2384 82 LEDEIDVIVIAGMG-GTLIREILEEGKEK--LKGVERLILQPNIH 123 (226)
T ss_pred ccCCcCEEEEeCCc-HHHHHHHHHHhhhh--hcCcceEEECCCCC
Confidence 35579999998754 13458888888887 63222456665554
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0016 Score=57.71 Aligned_cols=132 Identities=11% Similarity=0.038 Sum_probs=83.2
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcC-----CCCcEEEEEeCCchhHHHHHHHHhc--ccC
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAAR-----QTGGRVVCILSGVIGDIDASKKSLG--RYA 92 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~-----~~~grV~tIE~d~~~~~~~Ar~~l~--g~~ 92 (220)
|+...++..++++..++...+..+|+|-.|| +|.+-+.+...+. .....++++|.+ +..+..|+-++- +..
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacG-sG~fL~~~~~~i~~~~~~~~~~~i~G~ei~-~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACG-SGGFLVAAMEYIKEKRNKIKEINIYGIEID-PEAVALAKLNLLLHGID 103 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-T-TSHHHHHHHHHHHTCHHHHCCEEEEEEES--HHHHHHHHHHHHHTTHH
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhh-HHHHHHHHHHhhcccccccccceeEeecCc-HHHHHHHHhhhhhhccc
Confidence 4567778889999999988888899999986 8887776665331 125789999999 999999998774 432
Q ss_pred -CcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCc----------------------cHHHHHHHHHhhcCCCCCCE---
Q 042616 93 -NCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDID----------------------GHKNVFRAAKESVMHGSGAG--- 145 (220)
Q Consensus 93 -~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~----------------------~y~~~l~~l~~~~~L~~~Gg--- 145 (220)
.+..+..+|....-... ...||+|+...+-... ...-++..+... |++ ||
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~--Lk~-~G~~~ 180 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSL--LKP-GGRAA 180 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHT--EEE-EEEEE
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhh--ccc-cccee
Confidence 34578899876543221 3589999987665111 011356777777 765 55
Q ss_pred EEEEecCCCCC
Q 042616 146 VIVGYNALPKG 156 (220)
Q Consensus 146 viv~dNv~~~g 156 (220)
+|+-+++++.+
T Consensus 181 ~Ilp~~~L~~~ 191 (311)
T PF02384_consen 181 IILPNGFLFSS 191 (311)
T ss_dssp EEEEHHHHHGS
T ss_pred EEecchhhhcc
Confidence 55666666543
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0086 Score=54.34 Aligned_cols=104 Identities=16% Similarity=0.141 Sum_probs=70.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc-chhhhhhhcC--CCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG-DAQKLLMGDY--RGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g-da~~~L~~~~--~~~D~ 115 (220)
.+..+|+-+|+|.+|..++.+|+.+. ..+|+.+|.+ +++++.|++.... +.+..... +..+.+..+. ..+|+
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~G--a~~Viv~d~~-~~Rl~~A~~~~g~--~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLG--ASVVIVVDRS-PERLELAKEAGGA--DVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CceEEEeCCC-HHHHHHHHHhCCC--eEeecCccccHHHHHHHHhCCCCCCE
Confidence 33458999999999999988888765 4899999999 9999999996641 11111111 3332222222 36999
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
+|--... ...++.+... +++ ||.++.-.+..+
T Consensus 242 vie~~G~-----~~~~~~ai~~--~r~-gG~v~~vGv~~~ 273 (350)
T COG1063 242 VIEAVGS-----PPALDQALEA--LRP-GGTVVVVGVYGG 273 (350)
T ss_pred EEECCCC-----HHHHHHHHHH--hcC-CCEEEEEeccCC
Confidence 9865543 4567888887 765 777777666644
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0033 Score=53.31 Aligned_cols=126 Identities=10% Similarity=0.039 Sum_probs=75.9
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccC---Cc
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYA---NC 94 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~---~~ 94 (220)
++++.+| ..+.|......... +|||||+| +|--+.++|.+++. -+-..-|.+ +....-.+..+. ++. ..
T Consensus 7 aeRNk~p-Il~vL~~~l~~~~~-~vLEiaSG-tGqHa~~FA~~lP~--l~WqPSD~~-~~~~~sI~a~~~~~~~~Nv~~P 80 (204)
T PF06080_consen 7 AERNKDP-ILEVLKQYLPDSGT-RVLEIASG-TGQHAVYFAQALPH--LTWQPSDPD-DNLRPSIRAWIAEAGLPNVRPP 80 (204)
T ss_pred hhhCHhH-HHHHHHHHhCccCc-eEEEEcCC-ccHHHHHHHHHCCC--CEEcCCCCC-hHHHhhHHHHHHhcCCcccCCC
Confidence 3444444 23344443322222 69999986 99999999999974 677888998 776555555554 432 22
Q ss_pred EEEEEcchhhhhh----hcCCCccEEEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 95 IEFVKGDAQKLLM----GDYRGADFVLIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 95 Ve~v~gda~~~L~----~~~~~~D~VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+.+=..+...-.. ....+||.||.=---+. ......|+.+.+. |++ ||+++.+.-+.
T Consensus 81 ~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~--L~~-gG~L~~YGPF~ 144 (204)
T PF06080_consen 81 LALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARL--LKP-GGLLFLYGPFN 144 (204)
T ss_pred eEeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHh--CCC-CCEEEEeCCcc
Confidence 3321111111111 11358999984321111 3456778888888 864 99999998885
|
The function of this family is unknown. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0051 Score=55.02 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=64.0
Q ss_pred HHHHHHHhhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh-
Q 042616 30 EFISALAAGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM- 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~- 107 (220)
|.+..| +..+....|| || |+-|.|-..|- .+++ .|+++++|.| |++++.|++.+..+.+++.+++++..++..
T Consensus 14 E~i~~L-~~~~~giyiD-~TlG~GGHS~~iL~-~l~~-~~~li~~DrD-~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~ 88 (314)
T COG0275 14 EVVELL-APKPDGIYID-GTLGAGGHSRAILE-KLPD-LGRLIGIDRD-PQAIAIAKERLKEFDGRVTLVHGNFANLAEA 88 (314)
T ss_pred HHHHhc-ccCCCcEEEE-ecCCCcHhHHHHHH-hCCC-CCeEEEEcCC-HHHHHHHHHHhhccCCcEEEEeCcHHHHHHH
Confidence 334333 3344466777 45 44466655554 5665 7999999999 999999999998666899999998766542
Q ss_pred --hc-CCCccEEEEcCCC
Q 042616 108 --GD-YRGADFVLIDCNI 122 (220)
Q Consensus 108 --~~-~~~~D~VfiD~~k 122 (220)
.. ...+|-|++|-..
T Consensus 89 l~~~~i~~vDGiL~DLGV 106 (314)
T COG0275 89 LKELGIGKVDGILLDLGV 106 (314)
T ss_pred HHhcCCCceeEEEEeccC
Confidence 22 2589999999887
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0029 Score=56.51 Aligned_cols=108 Identities=15% Similarity=0.138 Sum_probs=80.6
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----ccC-CcEEEEEcchhhhhhhc
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RYA-NCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~~-~~Ve~v~gda~~~L~~~ 109 (220)
+.+.-+|+++|.||-|-.|+.-. .+.++.-+.+.-+|.| ...++..++++. |++ .+|.+..||.-.++...
T Consensus 116 l~s~~npkkvlVVgggDggvlre---vikH~~ve~i~~~eiD-~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~ 191 (337)
T KOG1562|consen 116 LCSHPNPKKVLVVGGGDGGVLRE---VIKHKSVENILLCEID-ENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL 191 (337)
T ss_pred cccCCCCCeEEEEecCCccceee---eeccccccceeeehhh-HHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh
Confidence 45678899999999654444322 2233445888999999 999999999885 564 56999999999999776
Q ss_pred -CCCccEEEEcCCCCC----ccH-HHHHHHHHhhcCCCCCCEEEEE
Q 042616 110 -YRGADFVLIDCNIDI----DGH-KNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 110 -~~~~D~VfiD~~k~~----~~y-~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.++||.|.+|....- ..| ..+++.+++. |++ +|+++.
T Consensus 192 ~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~a--Lk~-dgv~~~ 234 (337)
T KOG1562|consen 192 KENPFDVIITDSSDPVGPACALFQKPYFGLVLDA--LKG-DGVVCT 234 (337)
T ss_pred ccCCceEEEEecCCccchHHHHHHHHHHHHHHHh--hCC-CcEEEE
Confidence 689999999987511 234 5678888888 876 776554
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.014 Score=50.17 Aligned_cols=103 Identities=10% Similarity=0.021 Sum_probs=66.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhh--hhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLL--MGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L--~~~~~~~D~V 116 (220)
.+..+||=+|++ +|.+--+++.-+.+ .|.|++||.+ +.....--...+. ..||--+.+||..-- ..+.+.+|+|
T Consensus 72 k~gskVLYLGAa-sGTTVSHvSDIvg~-~G~VYaVEfs-~r~~rdL~~la~~-R~NIiPIl~DAr~P~~Y~~lv~~VDvI 147 (229)
T PF01269_consen 72 KPGSKVLYLGAA-SGTTVSHVSDIVGP-DGVVYAVEFS-PRSMRDLLNLAKK-RPNIIPILEDARHPEKYRMLVEMVDVI 147 (229)
T ss_dssp -TT-EEEEETTT-TSHHHHHHHHHHTT-TSEEEEEESS-HHHHHHHHHHHHH-STTEEEEES-TTSGGGGTTTS--EEEE
T ss_pred CCCCEEEEeccc-CCCccchhhhccCC-CCcEEEEEec-chhHHHHHHHhcc-CCceeeeeccCCChHHhhcccccccEE
Confidence 346899999984 89888899998876 8999999999 7554332222221 268888999986422 1224689999
Q ss_pred EEcCCCCCccHHHH-HHHHHhhcCCCCCCEEEEE
Q 042616 117 LIDCNIDIDGHKNV-FRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fiD~~k~~~~y~~~-l~~l~~~~~L~~~Ggviv~ 149 (220)
|.|-.. .+-.++ ...+... |++.|.++++
T Consensus 148 ~~DVaQ--p~Qa~I~~~Na~~f--Lk~gG~~~i~ 177 (229)
T PF01269_consen 148 FQDVAQ--PDQARIAALNARHF--LKPGGHLIIS 177 (229)
T ss_dssp EEE-SS--TTHHHHHHHHHHHH--EEEEEEEEEE
T ss_pred EecCCC--hHHHHHHHHHHHhh--ccCCcEEEEE
Confidence 999887 555444 4555556 7764444444
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0065 Score=51.31 Aligned_cols=122 Identities=14% Similarity=0.062 Sum_probs=84.8
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCC--cEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTG--GRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~--grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
...|..--..+.|.-..+|..|+|+|+ .-|-|+++.|.-+.+.| -+|+++|+| ...++-+... ...|.|+.|
T Consensus 52 ~k~p~D~~~yQellw~~~P~lvIE~Gs-~~GGSal~fA~~m~s~Gq~~kvl~vdId-i~~~~p~a~e----~p~i~f~eg 125 (237)
T COG3510 52 IKSPSDMWNYQELLWELQPSLVIEFGS-RHGGSALFFANMMISIGQPFKVLGVDID-IKPLDPAARE----VPDILFIEG 125 (237)
T ss_pred cCCHHHHHHHHHHHHhcCCceeEeecc-ccCchhhhhhHhHHhcCCCceEEEEecc-cCcCChhhhc----CCCeEEEeC
Confidence 567877778888888889999999998 47888999888776644 589999999 5554332221 157999999
Q ss_pred chhhh--h---hhc--CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 101 DAQKL--L---MGD--YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 101 da~~~--L---~~~--~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+..+. . ..+ ..+-=||.+|+++.-......++.+.++ |.. |-.+|+.|..
T Consensus 126 ss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pl--lsa-G~Y~vVeDs~ 182 (237)
T COG3510 126 SSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPL--LSA-GDYLVVEDSN 182 (237)
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhH--hhc-CceEEEeccc
Confidence 86542 1 111 2234578899988333446667777787 654 7777666555
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.012 Score=52.32 Aligned_cols=122 Identities=10% Similarity=0.030 Sum_probs=77.9
Q ss_pred CCCChhHHHHHHHHHhhC-CCCEEEEEcCCchHHHHHH----HHHHcCCC--CcEEEEEeCCchhHHHHHHHHh------
Q 042616 22 RGKEPDVGEFISALAAGN-NAQLIVMACSSIAVSRTLA----LVAAARQT--GGRVVCILSGVIGDIDASKKSL------ 88 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~-~a~~ILEIGtg~~G~sTl~----LA~A~~~~--~grV~tIE~d~~~~~~~Ar~~l------ 88 (220)
.+-+|..=+.|...+... ++-+|+-.||+ +|--+-- |.++.+.. .-+|+++|+| +..++.|++-.
T Consensus 96 FFRd~~~f~~L~~~~~~~~~~irIWSAgCS-tGEEpYSlAmll~e~~~~~~~~~~I~atDIs-~~aL~~Ar~G~Y~~~~~ 173 (287)
T PRK10611 96 FFREAHHFPILAEHARRRSGEYRVWSAAAS-TGEEPYSIAMTLADTLGTAPGRWKVFASDID-TEVLEKARSGIYRQEEL 173 (287)
T ss_pred ccCCcHHHHHHHHHHHhcCCCEEEEEcccc-CCHHHHHHHHHHHHhhcccCCCcEEEEEECC-HHHHHHHHhCCCCHHHH
Confidence 456777767776655432 34689999984 7844333 33322211 2479999999 99999998752
Q ss_pred ------------c--------------ccCCcEEEEEcchhhhhhhcCCCccEEEEc-----CCCCCccHHHHHHHHHhh
Q 042616 89 ------------G--------------RYANCIEFVKGDAQKLLMGDYRGADFVLID-----CNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 89 ------------~--------------g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD-----~~k~~~~y~~~l~~l~~~ 137 (220)
. .+...|+|...|..+.-....++||+||.= -+. ..-.++++.+...
T Consensus 174 r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~--~~~~~vl~~l~~~ 251 (287)
T PRK10611 174 KTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDK--TTQERILRRFVPL 251 (287)
T ss_pred hcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCH--HHHHHHHHHHHHH
Confidence 0 123557888888765211113689999841 122 3457888999998
Q ss_pred cCCCCCCEEEEEe
Q 042616 138 VMHGSGAGVIVGY 150 (220)
Q Consensus 138 ~~L~~~Ggviv~d 150 (220)
|+| ||+++.-
T Consensus 252 --L~p-gG~L~lG 261 (287)
T PRK10611 252 --LKP-DGLLFAG 261 (287)
T ss_pred --hCC-CcEEEEe
Confidence 876 8877664
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0026 Score=51.90 Aligned_cols=95 Identities=21% Similarity=0.165 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch-----hhhhhhc----C
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA-----QKLLMGD----Y 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda-----~~~L~~~----~ 110 (220)
+...+||+|++ .|-+|-.++....+ .++|++||.. +.. .+ ..+.++.||. .+.+... .
T Consensus 23 ~~~~vlDlG~a-PGGws~~~~~~~~~-~~~v~avDl~-~~~------~~----~~~~~i~~d~~~~~~~~~i~~~~~~~~ 89 (181)
T PF01728_consen 23 KGFTVLDLGAA-PGGWSQVLLQRGGP-AGRVVAVDLG-PMD------PL----QNVSFIQGDITNPENIKDIRKLLPESG 89 (181)
T ss_dssp TTEEEEEET-T-TSHHHHHHHTSTTT-EEEEEEEESS-STG------S-----TTEEBTTGGGEEEEHSHHGGGSHGTTT
T ss_pred cccEEEEcCCc-ccceeeeeeecccc-cceEEEEecc-ccc------cc----cceeeeecccchhhHHHhhhhhccccc
Confidence 45899999985 99999988876532 5899999999 651 01 2233333332 1222222 2
Q ss_pred CCccEEEEcCCCCC------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 111 RGADFVLIDCNIDI------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 111 ~~~D~VfiD~~k~~------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.++|+|+.|..... ......+..+... |+| ||.+|+.
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~--L~~-gG~~v~K 138 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALEL--LKP-GGTFVIK 138 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHH--HCT-TEEEEEE
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhh--hcC-CCEEEEE
Confidence 58999999993200 1123344455555 665 8877775
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.01 Score=54.36 Aligned_cols=100 Identities=19% Similarity=0.112 Sum_probs=81.9
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+..|+|.=+| +|.=++..|...+. -+|+.=|.+ |++.+.+++|++ +....+++++.||..+|-+....||+|=||
T Consensus 53 ~~~v~Dalsa-tGiRgIRya~E~~~--~~v~lNDis-p~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSA-TGIRGIRYAVETGV--VKVVLNDIS-PKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDID 128 (380)
T ss_pred CeEEeecccc-cchhHhhhhhhcCc--cEEEEccCC-HHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecC
Confidence 8999998764 99999998887654 289999999 999999999998 534678888899999997656788988888
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.- +....+++.+... ++ +||++.+-
T Consensus 129 PF---GSPaPFlDaA~~s--~~-~~G~l~vT 153 (380)
T COG1867 129 PF---GSPAPFLDAALRS--VR-RGGLLCVT 153 (380)
T ss_pred CC---CCCchHHHHHHHH--hh-cCCEEEEE
Confidence 75 4678899999998 76 48887653
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0066 Score=58.00 Aligned_cols=102 Identities=16% Similarity=0.122 Sum_probs=72.1
Q ss_pred cCCCCCChhHHHHHHHHHhhC-------CCCEEEEEcCCchHHHHHHHHHHcCCC------CcEEEEEeCCchhHHHHHH
Q 042616 19 MGKRGKEPDVGEFISALAAGN-------NAQLIVMACSSIAVSRTLALVAAARQT------GGRVVCILSGVIGDIDASK 85 (220)
Q Consensus 19 ~~~~~~~p~~~~~L~~La~~~-------~a~~ILEIGtg~~G~sTl~LA~A~~~~------~grV~tIE~d~~~~~~~Ar 85 (220)
.|+...++..+++|..++... ...+|||.+|| +|.+.+.++..++.. .-.++++|.| +..++.|+
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cG-sG~fl~~~~~~~~~~~~~~~~~~~i~g~DId-~~a~~~a~ 80 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCG-DGRLIAALLKKNEEINYFKEVELNIYFADID-KTLLKRAK 80 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCC-ccHHHHHHHHHHHhcCCcccceeeeeeechh-HHHHHHHH
Confidence 366778888999998877432 34689999997 899998888766421 2468999999 99999999
Q ss_pred HHhcccC-CcEEEEEcchhhhh----hhcCCCccEEEEcCCC
Q 042616 86 KSLGRYA-NCIEFVKGDAQKLL----MGDYRGADFVLIDCNI 122 (220)
Q Consensus 86 ~~l~g~~-~~Ve~v~gda~~~L----~~~~~~~D~VfiD~~k 122 (220)
.++.... ..+.+.++|..... +...+.||+|+-.++-
T Consensus 81 ~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 81 KLLGEFALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPY 122 (524)
T ss_pred HHHhhcCCCCceeeecccccccccccccccCcccEEEeCCCc
Confidence 9987321 23566666644321 1113579999977654
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0079 Score=53.84 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=49.7
Q ss_pred HHHHHHhhCCC-----CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---ccCCcEEEEEcch
Q 042616 31 FISALAAGNNA-----QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---RYANCIEFVKGDA 102 (220)
Q Consensus 31 ~L~~La~~~~a-----~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---g~~~~Ve~v~gda 102 (220)
.|..|....+. -++||||||++..-.| |+... .+=+.++.|+| +..++.|+++++ ++.++|+++..+.
T Consensus 88 ~i~DlL~~~~~~~~~~v~glDIGTGAscIYpL-Lg~~~--~~W~fvaTdID-~~sl~~A~~nv~~N~~L~~~I~l~~~~~ 163 (299)
T PF05971_consen 88 WIADLLASSNPGIPEKVRGLDIGTGASCIYPL-LGAKL--YGWSFVATDID-PKSLESARENVERNPNLESRIELRKQKN 163 (299)
T ss_dssp HHHHHHT--TCGCS---EEEEES-TTTTHHHH-HHHHH--H--EEEEEES--HHHHHHHHHHHHHT-T-TTTEEEEE--S
T ss_pred HHHHHhhccccccccceEeecCCccHHHHHHH-Hhhhh--cCCeEEEecCC-HHHHHHHHHHHHhccccccceEEEEcCC
Confidence 34455554442 4689999864333333 33222 36799999999 999999999997 5788999987643
Q ss_pred h-hhhhhc---CCCccEEEEcCCC
Q 042616 103 Q-KLLMGD---YRGADFVLIDCNI 122 (220)
Q Consensus 103 ~-~~L~~~---~~~~D~VfiD~~k 122 (220)
. .++..+ .+.|||.....+-
T Consensus 164 ~~~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 164 PDNIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp T-SSTTTSTT--S-EEEEEE----
T ss_pred ccccchhhhcccceeeEEecCCcc
Confidence 3 333332 2579999977766
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.019 Score=52.43 Aligned_cols=83 Identities=16% Similarity=0.103 Sum_probs=61.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.+.+.+||||++ +|-+|-.|++. +.+|++||.. +- +..... ..+|+.+.+|.....|. ..++|+++.
T Consensus 210 ~~g~~vlDLGAs-PGGWT~~L~~r----G~~V~AVD~g-~l----~~~L~~--~~~V~h~~~d~fr~~p~-~~~vDwvVc 276 (357)
T PRK11760 210 APGMRAVDLGAA-PGGWTYQLVRR----GMFVTAVDNG-PM----AQSLMD--TGQVEHLRADGFKFRPP-RKNVDWLVC 276 (357)
T ss_pred CCCCEEEEeCCC-CcHHHHHHHHc----CCEEEEEech-hc----CHhhhC--CCCEEEEeccCcccCCC-CCCCCEEEE
Confidence 467899999985 99999988873 7799999977 32 222111 25799999999888874 578999999
Q ss_pred cCCCCCccHHHHHHHHHhh
Q 042616 119 DCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~ 137 (220)
|..- ...+..+.+.+-
T Consensus 277 Dmve---~P~rva~lm~~W 292 (357)
T PRK11760 277 DMVE---KPARVAELMAQW 292 (357)
T ss_pred eccc---CHHHHHHHHHHH
Confidence 9864 445666666665
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.00079 Score=60.12 Aligned_cols=111 Identities=17% Similarity=0.076 Sum_probs=75.1
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHH-HHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhh
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTL-ALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQK 104 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl-~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~ 104 (220)
..|-+..+--....+.|+|+.+| .||+|+ .|..|- ...|+|+|-+ |..++.-|++++ +..++-.++.||-..
T Consensus 182 ~~EK~Rv~~~sc~~eviVDLYAG-IGYFTlpflV~ag---Ak~V~A~EwN-p~svEaLrR~~~~N~V~~r~~i~~gd~R~ 256 (351)
T KOG1227|consen 182 IKEKKRVLNTSCDGEVIVDLYAG-IGYFTLPFLVTAG---AKTVFACEWN-PWSVEALRRNAEANNVMDRCRITEGDNRN 256 (351)
T ss_pred HHHHHHhhhcccccchhhhhhcc-cceEEeehhhccC---ccEEEEEecC-HHHHHHHHHHHHhcchHHHHHhhhccccc
Confidence 34444444333445889999996 999999 677653 4689999999 999999999997 555677778888776
Q ss_pred hhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCE-EEEEe
Q 042616 105 LLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAG-VIVGY 150 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Gg-viv~d 150 (220)
.-|. ...|-|.+.--. ..-..|.-.+.- |+|.|| ++=++
T Consensus 257 ~~~~--~~AdrVnLGLlP--Sse~~W~~A~k~---Lk~eggsilHIH 296 (351)
T KOG1227|consen 257 PKPR--LRADRVNLGLLP--SSEQGWPTAIKA---LKPEGGSILHIH 296 (351)
T ss_pred cCcc--ccchheeecccc--ccccchHHHHHH---hhhcCCcEEEEe
Confidence 5443 567888877654 222333333333 345566 55444
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.015 Score=53.59 Aligned_cols=109 Identities=14% Similarity=0.038 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCC------------------------------Cc-------
Q 042616 26 PDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQT------------------------------GG------- 68 (220)
Q Consensus 26 p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~------------------------------~g------- 68 (220)
+..|.=|-.|+.-.+.+.++|-=|| +|...+-.|.-.+.. .+
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCG-SGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCG-SGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCC-ccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 3344444445433344578888775 787777554433200 01
Q ss_pred EEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCC---------ccHHHHHHHHHhh
Q 042616 69 RVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDI---------DGHKNVFRAAKES 137 (220)
Q Consensus 69 rV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~---------~~y~~~l~~l~~~ 137 (220)
.++|+|.| +.+++.|+.|.. |+.+.|+|.++|+..+-+. .+.+|+|+.+++-.- ..|....+.+++.
T Consensus 256 ~~~G~Did-~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~-~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 256 IIYGSDID-PRHIEGAKANARAAGVGDLIEFKQADATDLKEP-LEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred eEEEecCC-HHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC-CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence 47899999 999999999997 8889999999999986543 278999998876510 1566666677665
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0063 Score=51.24 Aligned_cols=105 Identities=12% Similarity=0.118 Sum_probs=59.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHc----CCCCc---EEEEEeCCchhHHHHHHH------------------Hh-c--c-
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAA----RQTGG---RVVCILSGVIGDIDASKK------------------SL-G--R- 90 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~----~~~~g---rV~tIE~d~~~~~~~Ar~------------------~l-~--g- 90 (220)
++-+|+-+||+ +|--+--||..+ +...+ +|++.|+| +..++.|++ ++ . +
T Consensus 31 ~~lrIWSagCS-tGeE~YSlAmll~e~~~~~~~~~~~I~atDi~-~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~ 108 (196)
T PF01739_consen 31 RPLRIWSAGCS-TGEEPYSLAMLLLELLPGALGWDFRILATDIS-PSALEKARAGIYPERSLRGLPPAYLRRYFTERDGG 108 (196)
T ss_dssp S-EEEEETT-T-TTHHHHHHHHHHHHHH-S-TT-SEEEEEEES--HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CC
T ss_pred CCeEEEECCCC-CChhHHHHHHHHHHHhcccCCCceEEEEEECC-HHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCC
Confidence 57789999985 885443333222 22233 89999999 999998875 22 1 1
Q ss_pred -------cCCcEEEEEcchhhhhhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 91 -------YANCIEFVKGDAQKLLMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 91 -------~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.++|+|...|..+ .+...++||+||.=--- +...-.++++.+... |+| ||.++.=
T Consensus 109 ~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~--L~p-gG~L~lG 174 (196)
T PF01739_consen 109 GYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRS--LKP-GGYLFLG 174 (196)
T ss_dssp CTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-HHHHHHHHHHHGGG--EEE-EEEEEE-
T ss_pred ceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHH--cCC-CCEEEEe
Confidence 23558999998887 22225789999842211 113447888999998 876 8887764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0051 Score=51.98 Aligned_cols=73 Identities=14% Similarity=-0.008 Sum_probs=56.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
-+.++|||+|+| +|.-++.-|.+. ...|++.|.+ |...+.++-|.+...-.|.++..|... . ...||+++.
T Consensus 78 VrgkrVLd~gag-sgLvaIAaa~aG---A~~v~a~d~~-P~~~~ai~lNa~angv~i~~~~~d~~g--~--~~~~Dl~La 148 (218)
T COG3897 78 VRGKRVLDLGAG-SGLVAIAAARAG---AAEVVAADID-PWLEQAIRLNAAANGVSILFTHADLIG--S--PPAFDLLLA 148 (218)
T ss_pred cccceeeecccc-cChHHHHHHHhh---hHHHHhcCCC-hHHHHHhhcchhhccceeEEeeccccC--C--CcceeEEEe
Confidence 346999999996 899988777763 3589999999 999999999987222358888887655 1 367999986
Q ss_pred cC
Q 042616 119 DC 120 (220)
Q Consensus 119 D~ 120 (220)
.-
T Consensus 149 gD 150 (218)
T COG3897 149 GD 150 (218)
T ss_pred ec
Confidence 54
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0081 Score=52.93 Aligned_cols=49 Identities=10% Similarity=0.001 Sum_probs=40.1
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG 89 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~ 89 (220)
.++|++|||+|+| .|..+.+.....+ .-.++++||.+ +.+.+.++..++
T Consensus 31 ~f~P~~vLD~GsG-pGta~wAa~~~~~-~~~~~~~vd~s-~~~~~l~~~l~~ 79 (274)
T PF09243_consen 31 DFRPRSVLDFGSG-PGTALWAAREVWP-SLKEYTCVDRS-PEMLELAKRLLR 79 (274)
T ss_pred CCCCceEEEecCC-hHHHHHHHHHHhc-CceeeeeecCC-HHHHHHHHHHHh
Confidence 4689999999986 8876665555555 36789999999 999999999887
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.017 Score=52.51 Aligned_cols=97 Identities=19% Similarity=0.133 Sum_probs=73.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE---
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI--- 118 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi--- 118 (220)
...||+|. |+|..+-.+..- - -+|-.|++| ...+..++.++. ..|+.+.||...-+|. -|+||+
T Consensus 179 ~~avDvGg-GiG~v~k~ll~~-f---p~ik~infd-lp~v~~~a~~~~---~gV~~v~gdmfq~~P~----~daI~mkWi 245 (342)
T KOG3178|consen 179 NVAVDVGG-GIGRVLKNLLSK-Y---PHIKGINFD-LPFVLAAAPYLA---PGVEHVAGDMFQDTPK----GDAIWMKWI 245 (342)
T ss_pred ceEEEcCC-cHhHHHHHHHHh-C---CCCceeecC-HHHHHhhhhhhc---CCcceecccccccCCC----cCeEEEEee
Confidence 77899996 599998888873 3 268999999 555555555553 1288899998665654 478885
Q ss_pred --cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 119 --DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 119 --D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..- ++...+|+.+.+. |.|+|.+||.+|+...
T Consensus 246 LhdwtD--edcvkiLknC~~s--L~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 246 LHDWTD--EDCVKILKNCKKS--LPPGGKIIVVENVTPE 280 (342)
T ss_pred cccCCh--HHHHHHHHHHHHh--CCCCCEEEEEeccCCC
Confidence 3333 6778999999999 9999999999998875
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.07 Score=46.39 Aligned_cols=147 Identities=18% Similarity=0.104 Sum_probs=73.8
Q ss_pred CCCCChhHHHHHHHHHhhC---CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcE
Q 042616 21 KRGKEPDVGEFISALAAGN---NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCI 95 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~---~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~V 95 (220)
|..+.|+..-.=..++... ..++||-+|= --..+|++|..-. ..+|+-+|+| +..++..++..+ |+ +|
T Consensus 22 Q~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGD--DDLtSlA~al~~~--~~~I~VvDiD-eRll~fI~~~a~~~gl--~i 94 (243)
T PF01861_consen 22 QGYATPETTLRRAALMAERGDLEGKRILFLGD--DDLTSLALALTGL--PKRITVVDID-ERLLDFINRVAEEEGL--PI 94 (243)
T ss_dssp ---B-HHHHHHHHHHHHHTT-STT-EEEEES---TT-HHHHHHHHT----SEEEEE-S--HHHHHHHHHHHHHHT----E
T ss_pred cccccHHHHHHHHHHHHhcCcccCCEEEEEcC--CcHHHHHHHhhCC--CCeEEEEEcC-HHHHHHHHHHHHHcCC--ce
Confidence 4456666642222222322 4799999994 3566676665433 5899999999 999999988887 66 39
Q ss_pred EEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC----CccceEEEeeecCC
Q 042616 96 EFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG----SWRGYKTHFLPIGE 170 (220)
Q Consensus 96 e~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g----~~~~~~s~~lPig~ 170 (220)
+.++.|..+-||.- .+.||++|.|++-..+-..=.+...... |+.+|+.+.+ ..-.+. .|..++..++ .-
T Consensus 95 ~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~--Lk~~g~~gy~-~~~~~~~s~~~~~~~Q~~l~--~~ 169 (243)
T PF01861_consen 95 EAVHYDLRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEA--LKGEGCAGYF-GFTHKEASPDKWLEVQRFLL--EM 169 (243)
T ss_dssp EEE---TTS---TTTSS-BSEEEE---SSHHHHHHHHHHHHHT--B-STT-EEEE-EE-TTT--HHHHHHHHHHHH--TS
T ss_pred EEEEecccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHH--hCCCCceEEE-EEecCcCcHHHHHHHHHHHH--HC
Confidence 99999999999864 5899999999986212223335555555 6666754333 111121 2543444444 66
Q ss_pred cEEEEEEee
Q 042616 171 GLLVTRIGE 179 (220)
Q Consensus 171 Gl~v~~~~~ 179 (220)
|+.|+....
T Consensus 170 gl~i~dii~ 178 (243)
T PF01861_consen 170 GLVITDIIP 178 (243)
T ss_dssp --EEEEEEE
T ss_pred CcCHHHHHh
Confidence 777776653
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.043 Score=48.98 Aligned_cols=99 Identities=10% Similarity=0.080 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+.++||-+|+|++|..++.+|+++. ..+|++++.+ +++.+.|++. |...-+.....+..+.+.. .+.+|+|| |
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G--~~~Vi~~~~~-~~~~~~a~~l--Ga~~vi~~~~~~~~~~~~~-~g~~D~vi-d 241 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLG--AAEIVCADVS-PRSLSLAREM--GADKLVNPQNDDLDHYKAE-KGYFDVSF-E 241 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEEeCC-HHHHHHHHHc--CCcEEecCCcccHHHHhcc-CCCCCEEE-E
Confidence 4688999999999999999998852 2379999999 9999988873 2211122112233333321 24589876 5
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+-- . ...++.+.+. +++ ||.++.-..
T Consensus 242 ~~G--~--~~~~~~~~~~--l~~-~G~iv~~G~ 267 (343)
T PRK09880 242 VSG--H--PSSINTCLEV--TRA-KGVMVQVGM 267 (343)
T ss_pred CCC--C--HHHHHHHHHH--hhc-CCEEEEEcc
Confidence 543 2 2345666666 665 777776544
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.11 Score=46.91 Aligned_cols=127 Identities=10% Similarity=0.064 Sum_probs=79.9
Q ss_pred CCChhHHHHHHH----HHhhCC-CCEEEEEcCCchHHHHHHHHHHcCCC--CcEEEEEeCCchhHHHHHHHHhc-ccCCc
Q 042616 23 GKEPDVGEFISA----LAAGNN-AQLIVMACSSIAVSRTLALVAAARQT--GGRVVCILSGVIGDIDASKKSLG-RYANC 94 (220)
Q Consensus 23 ~~~p~~~~~L~~----La~~~~-a~~ILEIGtg~~G~sTl~LA~A~~~~--~grV~tIE~d~~~~~~~Ar~~l~-g~~~~ 94 (220)
.......++|.. +|+..+ ...+||+||| .|.=|-.|..++.+. .-+.+.||++ .+.++.+.+.+. ..-..
T Consensus 54 Yptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG-~~~Kt~~LL~aL~~~~~~~~Y~plDIS-~~~L~~a~~~L~~~~~p~ 131 (319)
T TIGR03439 54 YLTNDEIEILKKHSSDIAASIPSGSMLVELGSG-NLRKVGILLEALERQKKSVDYYALDVS-RSELQRTLAELPLGNFSH 131 (319)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCCCEEEEECCC-chHHHHHHHHHHHhcCCCceEEEEECC-HHHHHHHHHhhhhccCCC
Confidence 344445555544 333333 3479999997 788788888887542 2568999999 999999999887 32134
Q ss_pred EEE--EEcchhhhhhhc-----CC-CccEEEEcCCCCC---ccHHHHHHHHHh-hcCCCCCCEEEEEecCC
Q 042616 95 IEF--VKGDAQKLLMGD-----YR-GADFVLIDCNIDI---DGHKNVFRAAKE-SVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 95 Ve~--v~gda~~~L~~~-----~~-~~D~VfiD~~k~~---~~y~~~l~~l~~-~~~L~~~Ggviv~dNv~ 153 (220)
+++ ++||..+.+..+ .. +--+.|+...-.+ .+-...|+.+.. . |.|.+.+||.=|..
T Consensus 132 l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~--l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 132 VRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATA--LSPSDSFLIGLDGC 200 (319)
T ss_pred eEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhh--CCCCCEEEEecCCC
Confidence 555 899987764322 12 3344555544411 223456677776 6 77877777765544
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.12 Score=37.32 Aligned_cols=102 Identities=16% Similarity=0.099 Sum_probs=63.9
Q ss_pred EEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCc--EEEEEcchhh-hhhhcC-CCccEEEEc
Q 042616 44 IVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANC--IEFVKGDAQK-LLMGDY-RGADFVLID 119 (220)
Q Consensus 44 ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~--Ve~v~gda~~-~L~~~~-~~~D~VfiD 119 (220)
++|+||| +|..+ .++..... ...++++|.+ +..++.++..... ... +.+..++... .++... ..||++...
T Consensus 52 ~ld~~~g-~g~~~-~~~~~~~~-~~~~~~~d~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCG-TGRLA-LLARLGGR-GAYVVGVDLS-PEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISL 126 (257)
T ss_pred eEEecCC-cCHHH-HHHHhCCC-CceEEEEeCC-HHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEEeee
Confidence 9999996 89877 44433222 2488999999 8888875554422 222 7888888876 344322 379999433
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
...........+..+.+. ++| +|.++.....
T Consensus 127 ~~~~~~~~~~~~~~~~~~--l~~-~g~~~~~~~~ 157 (257)
T COG0500 127 LVLHLLPPAKALRELLRV--LKP-GGRLVLSDLL 157 (257)
T ss_pred eehhcCCHHHHHHHHHHh--cCC-CcEEEEEecc
Confidence 332001136778888888 776 6665555443
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.062 Score=47.25 Aligned_cols=90 Identities=11% Similarity=-0.008 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEE-
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVL- 117 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vf- 117 (220)
++..++||||+| .|-.|..|+.. -.+|++.|.+ +.+...-++ +|+ +++ +..+. .+...+||+|-
T Consensus 93 ~~~~~lLDlGAG-dG~VT~~l~~~----f~~v~aTE~S-~~Mr~rL~~--kg~----~vl--~~~~w-~~~~~~fDvIsc 157 (265)
T PF05219_consen 93 WKDKSLLDLGAG-DGEVTERLAPL----FKEVYATEAS-PPMRWRLSK--KGF----TVL--DIDDW-QQTDFKFDVISC 157 (265)
T ss_pred ccCCceEEecCC-CcHHHHHHHhh----cceEEeecCC-HHHHHHHHh--CCC----eEE--ehhhh-hccCCceEEEee
Confidence 467889999997 89999999875 3579999999 777543322 133 222 22222 12245799995
Q ss_pred ---EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 118 ---IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 118 ---iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|=- ......++.+... |+| +|++|.
T Consensus 158 LNvLDRc---~~P~~LL~~i~~~--l~p-~G~lil 186 (265)
T PF05219_consen 158 LNVLDRC---DRPLTLLRDIRRA--LKP-NGRLIL 186 (265)
T ss_pred hhhhhcc---CCHHHHHHHHHHH--hCC-CCEEEE
Confidence 4422 4567889999998 988 666555
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.038 Score=46.95 Aligned_cols=97 Identities=18% Similarity=0.111 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh--hh----hhcC-C
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK--LL----MGDY-R 111 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~--~L----~~~~-~ 111 (220)
.+...|+|+|+ +.|.++-.+++-+.. +++|++||.. |-.. . .+|.++++|..+ .+ ..+. .
T Consensus 44 ~~~~~ViDLGA-APGgWsQva~~~~~~-~~~ivavDi~-p~~~---------~-~~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 44 KPGMVVVDLGA-APGGWSQVAAKKLGA-GGKIVAVDIL-PMKP---------I-PGVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred cCCCEEEEcCC-CCCcHHHHHHHHhCC-CCcEEEEECc-cccc---------C-CCceEEeeeccCccHHHHHHHHcCCC
Confidence 45799999998 588888888887776 7789999999 4321 2 348888888632 22 2222 4
Q ss_pred CccEEEEcCCCCC-----ccH-------HHHHHHHHhhcCCCCCCEEEEEec
Q 042616 112 GADFVLIDCNIDI-----DGH-------KNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 112 ~~D~VfiD~~k~~-----~~y-------~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
++|+|..|...+. .+. ...++.+... |+| ||.+++..
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~v--L~~-~G~fv~K~ 159 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEV--LKP-GGSFVAKV 159 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHe--eCC-CCeEEEEE
Confidence 5799999987611 111 2234555555 765 88888773
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.081 Score=48.28 Aligned_cols=111 Identities=18% Similarity=0.210 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc----chh
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG----DAQ 103 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g----da~ 103 (220)
.+.-+.+. +..+...+.-+|+|++|.+++.-|.++. .+++++||++ +++.+.|++.=. ..+++. |..
T Consensus 174 ~Gav~nta-~v~~G~tvaV~GlGgVGlaaI~gA~~ag--A~~IiAvD~~-~~Kl~~A~~fGA-----T~~vn~~~~~~vv 244 (366)
T COG1062 174 IGAVVNTA-KVEPGDTVAVFGLGGVGLAAIQGAKAAG--AGRIIAVDIN-PEKLELAKKFGA-----THFVNPKEVDDVV 244 (366)
T ss_pred hHHhhhcc-cCCCCCeEEEEeccHhHHHHHHHHHHcC--CceEEEEeCC-HHHHHHHHhcCC-----ceeecchhhhhHH
Confidence 34444333 5566788999999999999998888765 5999999999 999999998632 333333 455
Q ss_pred hhhhhcC-CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 104 KLLMGDY-RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 104 ~~L~~~~-~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
+.+..+- ...|++| |+.- ++ +.+++.... +.+ +|..+.-.+-.+
T Consensus 245 ~~i~~~T~gG~d~~~-e~~G---~~-~~~~~al~~--~~~-~G~~v~iGv~~~ 289 (366)
T COG1062 245 EAIVELTDGGADYAF-ECVG---NV-EVMRQALEA--THR-GGTSVIIGVAGA 289 (366)
T ss_pred HHHHHhcCCCCCEEE-EccC---CH-HHHHHHHHH--Hhc-CCeEEEEecCCC
Confidence 5554543 4789995 4432 22 367777776 544 776666555443
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.047 Score=52.35 Aligned_cols=109 Identities=12% Similarity=0.082 Sum_probs=68.6
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE-------------cchhh
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK-------------GDAQK 104 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~-------------gda~~ 104 (220)
..++.+|+-+|+|.+|..++..|.++ |.+|+.+|.+ +++.+.++++=... -.+..-. .+..+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l---GA~V~a~D~~-~~rle~aeslGA~~-v~i~~~e~~~~~~gya~~~s~~~~~ 236 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL---GAIVRAFDTR-PEVAEQVESMGAEF-LELDFEEEGGSGDGYAKVMSEEFIK 236 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHHcCCeE-EEeccccccccccchhhhcchhHHH
Confidence 45789999999999999999988876 5689999999 99999998841110 0011111 11111
Q ss_pred ----hhhhcCCCccEEEEcCCCCCccHHHH-HHHHHhhcCCCCCCEEEEEecCCC
Q 042616 105 ----LLMGDYRGADFVLIDCNIDIDGHKNV-FRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 105 ----~L~~~~~~~D~VfiD~~k~~~~y~~~-l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.+.+....+|+|+--+..+....+.. .+...+. ++| ||+||.-.+-.
T Consensus 237 ~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~--mkp-GgvIVdvg~~~ 288 (509)
T PRK09424 237 AEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVAS--MKP-GSVIVDLAAEN 288 (509)
T ss_pred HHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHh--cCC-CCEEEEEccCC
Confidence 11111246999986665411112344 4777777 765 88877655433
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0067 Score=57.42 Aligned_cols=110 Identities=14% Similarity=0.092 Sum_probs=90.7
Q ss_pred HHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc
Q 042616 32 ISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 32 L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~ 109 (220)
+..+.+..++-+|||.=+ ++|.-+|..|.-++. -++|++-|.+ +..++..++|.+ +.++.|+..++||..++-..
T Consensus 101 ~~~~~~~~~~l~vLeals-AtGlrslRya~El~~-v~~v~AnD~~-~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~ 177 (525)
T KOG1253|consen 101 AALLKREEKSLRVLEALS-ATGLRSLRYAKELPG-VRQVVANDLN-ENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEH 177 (525)
T ss_pred cchhhhccCcchHHHHhh-hhhHHHHHHHHHhcc-hhhhcccCCC-HHHHHHHHhhhhhcCchhhcccccchHHHHHHhc
Confidence 455667788889999754 599999999988875 7899999999 999999999998 66788999999999887543
Q ss_pred C---CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 110 Y---RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 110 ~---~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
. ..||+|=+|.- +....+|+.+.+. ++ .||++.+-
T Consensus 178 ~~~~~~FDvIDLDPy---Gs~s~FLDsAvqa--v~-~gGLL~vT 215 (525)
T KOG1253|consen 178 PMVAKFFDVIDLDPY---GSPSPFLDSAVQA--VR-DGGLLCVT 215 (525)
T ss_pred cccccccceEecCCC---CCccHHHHHHHHH--hh-cCCEEEEE
Confidence 3 67999988875 4567888999998 75 59998764
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.063 Score=45.75 Aligned_cols=106 Identities=11% Similarity=0.032 Sum_probs=71.8
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhh--hhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLL--MGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L--~~~~~~~D~ 115 (220)
..+..+||=+|+ ++|.+.-+.+.-+. .|+++|||.+ +.....--...+. ..||--+.+||..-- ..+-+..|+
T Consensus 74 i~~g~~VLYLGA-asGTTvSHVSDIv~--~G~iYaVEfs-~R~~reLl~~a~~-R~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 74 IKEGSKVLYLGA-ASGTTVSHVSDIVG--EGRIYAVEFS-PRPMRELLDVAEK-RPNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred cCCCCEEEEeec-cCCCcHhHHHhccC--CCcEEEEEec-chhHHHHHHHHHh-CCCceeeecccCCcHHhhhhcccccE
Confidence 345789999998 48988888998776 6999999999 7665433333222 267888889985421 133478999
Q ss_pred EEEcCCCCCccHHHH-HHHHHhhcCCCCCCEEEEEecC
Q 042616 116 VLIDCNIDIDGHKNV-FRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 116 VfiD~~k~~~~y~~~-l~~l~~~~~L~~~Ggviv~dNv 152 (220)
||.|-.. .+-.++ .+.+... |++.|.++++--+
T Consensus 149 iy~DVAQ--p~Qa~I~~~Na~~F--Lk~~G~~~i~iKA 182 (231)
T COG1889 149 IYQDVAQ--PNQAEILADNAEFF--LKKGGYVVIAIKA 182 (231)
T ss_pred EEEecCC--chHHHHHHHHHHHh--cccCCeEEEEEEe
Confidence 9999988 555555 3444555 6665555555333
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.071 Score=49.06 Aligned_cols=103 Identities=9% Similarity=-0.024 Sum_probs=62.7
Q ss_pred CCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhccc----CCcEEEEE----cchhhhhhhc
Q 042616 39 NNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRY----ANCIEFVK----GDAQKLLMGD 109 (220)
Q Consensus 39 ~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~----~~~Ve~v~----gda~~~L~~~ 109 (220)
.+.++||-+| +|++|..++.+|+++.....+|++++.+ +++++.|++.+... .....++. .+..+.+..+
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~-~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVN-DERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCC-HHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHH
Confidence 3457888887 5789999988888753212489999999 99999999864310 00112222 2333333222
Q ss_pred --CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 110 --YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 110 --~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
...+|.+|..... ...++.+.+. +++.|++++.
T Consensus 253 t~g~g~D~vid~~g~-----~~~~~~a~~~--l~~~G~~v~~ 287 (410)
T cd08238 253 TGGQGFDDVFVFVPV-----PELVEEADTL--LAPDGCLNFF 287 (410)
T ss_pred hCCCCCCEEEEcCCC-----HHHHHHHHHH--hccCCeEEEE
Confidence 2469988865443 2345566666 6655666554
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.064 Score=48.45 Aligned_cols=100 Identities=14% Similarity=0.063 Sum_probs=61.3
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~ 115 (220)
..+.++||-.|+|++|..++.+|++. +. +|++++.+ +++.+.+++. |...-+.....+..+.+..+ .+.+|+
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~---G~~~Vi~~~~~-~~r~~~a~~~--Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAA---GASQVVAVDLN-EDKLALAREL--GATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCcEEEEcCC-HHHHHHHHHc--CCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 34568898899988999998888875 44 79999999 9998888763 22111222222333323222 236897
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+| |+-- ....++.+.+. +++ ||.++.-.
T Consensus 263 vi-d~~G----~~~~~~~~~~~--l~~-~G~iv~~G 290 (371)
T cd08281 263 AF-EMAG----SVPALETAYEI--TRR-GGTTVTAG 290 (371)
T ss_pred EE-ECCC----ChHHHHHHHHH--Hhc-CCEEEEEc
Confidence 76 5543 12345556666 655 66655443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.06 Score=48.31 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=63.9
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
..+.++||-.|+|++|..++.+|++. +. +|++++.+ +++.+.+++. |...-+.....+..+.+... ...+|
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~---G~~~Vi~~~~~-~~~~~~~~~~--Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALA---GASKIIAVDID-DRKLEWAREF--GATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCC-HHHHHHHHHc--CCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 35678999999988999999999875 44 59999999 8988888653 32111222223333333232 23689
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+|| |+-- . ...++.+... +++ ||.++.-..
T Consensus 248 ~vi-d~~g--~--~~~~~~~~~~--~~~-~G~iv~~G~ 277 (358)
T TIGR03451 248 VVI-DAVG--R--PETYKQAFYA--RDL-AGTVVLVGV 277 (358)
T ss_pred EEE-ECCC--C--HHHHHHHHHH--hcc-CCEEEEECC
Confidence 776 6654 2 2345566666 655 777776544
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.038 Score=41.95 Aligned_cols=89 Identities=17% Similarity=0.169 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcC--CCccEEEEcCCCCCccHHH
Q 042616 52 AVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDY--RGADFVLIDCNIDIDGHKN 129 (220)
Q Consensus 52 ~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~--~~~D~VfiD~~k~~~~y~~ 129 (220)
+|..++.+|++. +.+|++++.+ +++.+.++++-. ..-+..-..|..+.+..+. ..+|.||--... ..
T Consensus 2 vG~~a~q~ak~~---G~~vi~~~~~-~~k~~~~~~~Ga--~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~-----~~ 70 (130)
T PF00107_consen 2 VGLMAIQLAKAM---GAKVIATDRS-EEKLELAKELGA--DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS-----GD 70 (130)
T ss_dssp HHHHHHHHHHHT---TSEEEEEESS-HHHHHHHHHTTE--SEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-----HH
T ss_pred hHHHHHHHHHHc---CCEEEEEECC-HHHHHHHHhhcc--cccccccccccccccccccccccceEEEEecCc-----HH
Confidence 789999999886 5899999999 999999887532 0111111223444444433 369988754443 46
Q ss_pred HHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 130 VFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 130 ~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.++..... +++ ||.++.-....
T Consensus 71 ~~~~~~~~--l~~-~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKL--LRP-GGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHH--EEE-EEEEEEESSTS
T ss_pred HHHHHHHH--hcc-CCEEEEEEccC
Confidence 77888887 765 88888776665
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.073 Score=46.43 Aligned_cols=125 Identities=18% Similarity=0.135 Sum_probs=71.4
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA 102 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda 102 (220)
...+....++..+...+.... +....| |....+..+++ ..+++..|.. |+..+.-++++.+. .+|.+.+.|+
T Consensus 41 ~~p~~l~~yl~~v~~~n~~~~-l~~YPG----SP~ia~~llR~-qDrl~l~ELH-p~d~~~L~~~~~~~-~~v~v~~~DG 112 (245)
T PF04378_consen 41 DLPPALQPYLDAVRALNPDGE-LRFYPG----SPAIAARLLRE-QDRLVLFELH-PQDFEALKKNFRRD-RRVRVHHRDG 112 (245)
T ss_dssp GS-GGGHHHHHHHHHHSSSSS---EEE-----HHHHHHHHS-T-TSEEEEE--S-HHHHHHHTTS--TT-S-EEEE-S-H
T ss_pred cchHHHHHHHHHHHHhccCCC-cCcCCC----CHHHHHHhCCc-cceEEEEecC-chHHHHHHHHhccC-CccEEEeCch
Confidence 345566778877766655443 555554 34444445565 7899999999 99999888888753 5899999999
Q ss_pred hhhhhhcCCCcc---EEEEcCCC-CCccHHHHHHHHHhhc-CCCCCCEEEEEecCCCCC
Q 042616 103 QKLLMGDYRGAD---FVLIDCNI-DIDGHKNVFRAAKESV-MHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 103 ~~~L~~~~~~~D---~VfiD~~k-~~~~y~~~l~~l~~~~-~L~~~Ggviv~dNv~~~g 156 (220)
.+.+..+..+-. +|+||.+- ...+|.++.+.+...- +- +.|.++|-+=++.+.
T Consensus 113 ~~~l~allPP~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~-~~G~~~iWYPi~~~~ 170 (245)
T PF04378_consen 113 YEGLKALLPPPERRGLVLIDPPYEQKDDYQRVVDALAKALKRW-PTGVYAIWYPIKDRE 170 (245)
T ss_dssp HHHHHHH-S-TTS-EEEEE-----STTHHHHHHHHHHHHHHH--TTSEEEEEEEESSHH
T ss_pred hhhhhhhCCCCCCCeEEEECCCCCCchHHHHHHHHHHHHHHhc-CCcEEEEEeecccHH
Confidence 998766654444 99999953 1267766655554320 02 557777777776543
|
; PDB: 2OO3_A. |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.024 Score=44.38 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=39.8
Q ss_pred EEEEEcchhhhhhhcCCCccEEEEcCCCCCccH----HHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 95 IEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGH----KNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 95 Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y----~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+++..||+.+.|+++...+|.+|+|+-....+. .++|+.+.++ +++ ||+++.+.+-
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~--~~~-~~~l~Tys~a 92 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARL--SKP-GGTLATYSSA 92 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHH--EEE-EEEEEES--B
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHH--hCC-CcEEEEeech
Confidence 688999999999998889999999974322222 8899999998 765 9999987543
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.069 Score=48.46 Aligned_cols=113 Identities=15% Similarity=0.148 Sum_probs=69.5
Q ss_pred HHHHHHHhhC----CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-----------ccCCc
Q 042616 30 EFISALAAGN----NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-----------RYANC 94 (220)
Q Consensus 30 ~~L~~La~~~----~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-----------g~~~~ 94 (220)
.||+..+... +...|||+|||=-|=.--|... + -++++++|++ ++.++.|++..+ ...-.
T Consensus 48 ~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~--~--i~~~vg~Dis-~~si~ea~~Ry~~~~~~~~~~~~~~~f~ 122 (331)
T PF03291_consen 48 VLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA--K--IKHYVGIDIS-EESIEEARERYKQLKKRNNSKQYRFDFI 122 (331)
T ss_dssp HHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT--T---SEEEEEES--HHHHHHHHHHHHHHHTSTT-HTSEECCE
T ss_pred HHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc--C--CCEEEEEeCC-HHHHHHHHHHHHHhccccccccccccch
Confidence 4555555432 6789999999633545556553 1 5899999999 999999988772 11234
Q ss_pred EEEEEcchhh-hhhhc----CCCccEEEEcCCCCC----c-cHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 95 IEFVKGDAQK-LLMGD----YRGADFVLIDCNIDI----D-GHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 95 Ve~v~gda~~-~L~~~----~~~~D~VfiD~~k~~----~-~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+++.+|... .|... ..+||+|=.=-.-++ + .-...++.+... |+| ||+++.-
T Consensus 123 a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~--Lk~-GG~FIgT 185 (331)
T PF03291_consen 123 AEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSL--LKP-GGYFIGT 185 (331)
T ss_dssp EEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHT--EEE-EEEEEEE
T ss_pred hheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHh--cCC-CCEEEEE
Confidence 7889998742 22211 248999864433211 2 234578888888 886 9998873
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.11 Score=46.11 Aligned_cols=102 Identities=11% Similarity=0.021 Sum_probs=64.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~V 116 (220)
.+.++||-.|+|.+|..++.+|++. +.+ |++++.+ ++..+.+++. |...-+.....+..++.... ...+|-+
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~---G~~~v~~~~~~-~~~~~~~~~~--Ga~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVAL---GAKSVTAIDIN-SEKLALAKSL--GAMQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEECCC-HHHHHHHHHc--CCceEecCcccCHHHHHHHhcCCCCCeE
Confidence 4568999899988999999899876 444 7899999 8888877653 22111221122222222211 2468878
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
++|+-- . ...++.+.+. |++ ||.++.-...
T Consensus 233 v~d~~G--~--~~~~~~~~~~--l~~-~G~iv~~G~~ 262 (347)
T PRK10309 233 ILETAG--V--PQTVELAIEI--AGP-RAQLALVGTL 262 (347)
T ss_pred EEECCC--C--HHHHHHHHHH--hhc-CCEEEEEccC
Confidence 888875 2 3456666666 665 7777765443
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.12 Score=45.75 Aligned_cols=134 Identities=12% Similarity=0.110 Sum_probs=81.5
Q ss_pred hHHHHHHHHhc--CCCCCChhHHHHHHHHHh-----hC--CCCEEEEEcCCchHH----HHHHHHHHcCC---CCcEEEE
Q 042616 9 ATKAYLQALKM--GKRGKEPDVGEFISALAA-----GN--NAQLIVMACSSIAVS----RTLALVAAARQ---TGGRVVC 72 (220)
Q Consensus 9 a~~aY~~~l~~--~~~~~~p~~~~~L~~La~-----~~--~a~~ILEIGtg~~G~----sTl~LA~A~~~---~~grV~t 72 (220)
..++.++++-. ...+-+|+.-+.|...+. .. ++-+|+-+||+ +|- .++.|.++.+. ..=+|++
T Consensus 56 e~~~~l~~ltin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCS-tGEEpYSiAm~l~e~~~~~~~~~~~I~A 134 (268)
T COG1352 56 ELQAFLDALTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACS-TGEEPYSLAMLLLEALGKLAGFRVKILA 134 (268)
T ss_pred HHHHHHHHhhhccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcC-CCccHHHHHHHHHHHhccccCCceEEEE
Confidence 34455555333 235667777666655554 22 37789999985 883 33445555432 2357899
Q ss_pred EeCCchhHHHHHHH-------------------Hhc----c-------cCCcEEEEEcchhhhhhhcCCCccEEEE----
Q 042616 73 ILSGVIGDIDASKK-------------------SLG----R-------YANCIEFVKGDAQKLLMGDYRGADFVLI---- 118 (220)
Q Consensus 73 IE~d~~~~~~~Ar~-------------------~l~----g-------~~~~Ve~v~gda~~~L~~~~~~~D~Vfi---- 118 (220)
.|+| ...++.|++ +|. + +.+.|+|...|..+--+ ..+.||+||.
T Consensus 135 tDId-~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVL 212 (268)
T COG1352 135 TDID-LSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVL 212 (268)
T ss_pred EECC-HHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceE
Confidence 9999 999988764 121 1 11336666666654332 3567999982
Q ss_pred -cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 119 -DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 119 -D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
=-++ ..=.++++..... |+| ||+++.-
T Consensus 213 IYFd~--~~q~~il~~f~~~--L~~-gG~LflG 240 (268)
T COG1352 213 IYFDE--ETQERILRRFADS--LKP-GGLLFLG 240 (268)
T ss_pred EeeCH--HHHHHHHHHHHHH--hCC-CCEEEEc
Confidence 1122 3346778888888 876 8887764
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.011 Score=48.75 Aligned_cols=102 Identities=13% Similarity=0.084 Sum_probs=65.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-----ccCCcE---EEEEcchhhhhhhcCC
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-----RYANCI---EFVKGDAQKLLMGDYR 111 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-----g~~~~V---e~v~gda~~~L~~~~~ 111 (220)
.++.|||+|.|.+|.+++.+|..++ ...|.-.|-+ ++.++-.++... ++ +.+ +...-.++... ...
T Consensus 29 rg~~ilelgggft~laglmia~~a~--~~~v~ltdgn-e~svrnv~ki~~~n~~s~~-tsc~vlrw~~~~aqsq~--eq~ 102 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAP--DSSVWLTDGN-EESVRNVEKIRNSNMASSL-TSCCVLRWLIWGAQSQQ--EQH 102 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecC--CceEEEecCC-HHHHHHHHHHHhccccccc-ceehhhHHHHhhhHHHH--hhC
Confidence 4588999998889999998888776 4788888999 666655554332 22 222 22222233322 146
Q ss_pred CccEEE-EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 112 GADFVL-IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 112 ~~D~Vf-iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.||+|+ -||--=.+-.....+.+..+ |+|.|.-+++
T Consensus 103 tFDiIlaADClFfdE~h~sLvdtIk~l--L~p~g~Al~f 139 (201)
T KOG3201|consen 103 TFDIILAADCLFFDEHHESLVDTIKSL--LRPSGRALLF 139 (201)
T ss_pred cccEEEeccchhHHHHHHHHHHHHHHH--hCcccceeEe
Confidence 899987 35533102235667788888 8898886665
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.12 Score=46.31 Aligned_cols=95 Identities=9% Similarity=0.012 Sum_probs=61.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.+.+.||-+|+|++|..++.+|+++.- +.+|+.++.+ +++++.|++ +. ....+ . + +.. ...+|+||
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g-~~~vi~~~~~-~~k~~~a~~-~~----~~~~~-~---~-~~~-~~g~d~vi- 227 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYP-ESKLVVFGKH-QEKLDLFSF-AD----ETYLI-D---D-IPE-DLAVDHAF- 227 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcC-CCcEEEEeCc-HhHHHHHhh-cC----ceeeh-h---h-hhh-ccCCcEEE-
Confidence 456899999999899988888775321 4589999999 999988875 22 11111 1 1 111 12589876
Q ss_pred cCCCCCcc-HHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 119 DCNIDIDG-HKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 119 D~~k~~~~-y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+-- .. ....++.+.+. +++ ||.++.-.+
T Consensus 228 D~~G--~~~~~~~~~~~~~~--l~~-~G~iv~~G~ 257 (341)
T cd08237 228 ECVG--GRGSQSAINQIIDY--IRP-QGTIGLMGV 257 (341)
T ss_pred ECCC--CCccHHHHHHHHHh--CcC-CcEEEEEee
Confidence 5543 22 34567777777 765 777766543
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.065 Score=47.12 Aligned_cols=96 Identities=14% Similarity=0.018 Sum_probs=67.6
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCN 121 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~ 121 (220)
+++|+.|| +|-.++.|..+- ...+.++|.| +.+++.-+.|+... ++++|..++.+.. ...+|+++.+.+
T Consensus 2 ~v~dLFsG-~Gg~~~gl~~~G---~~~v~a~e~~-~~a~~~~~~N~~~~-----~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAG-IGGFRLGLEKAG---FEIVAANEID-KSAAETYEANFPNK-----LIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccC-cchHHHHHHHcC---CEEEEEEeCC-HHHHHHHHHhCCCC-----CccCccccCchhhcCCCCCEEEeCCC
Confidence 58999986 888888887652 2357889999 99988888887521 5667777765432 457999997753
Q ss_pred C---------------CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 122 I---------------DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 122 k---------------~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
= ++..+.++++.+... +| -+++..||-
T Consensus 72 Cq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~---~P--~~~v~ENV~ 113 (275)
T cd00315 72 CQPFSIAGKRKGFEDTRGTLFFEIIRILKEK---KP--KYFLLENVK 113 (275)
T ss_pred ChhhhHHhhcCCCCCchHHHHHHHHHHHHhc---CC--CEEEEEcCc
Confidence 2 112356677777664 45 589999996
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.23 Score=44.65 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=64.8
Q ss_pred HhhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc-chhhhhhhc-CCC
Q 042616 36 AAGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG-DAQKLLMGD-YRG 112 (220)
Q Consensus 36 a~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g-da~~~L~~~-~~~ 112 (220)
+...+.++||-.|+ |++|..++.+|++. |.+|++++.+ ++..+.+++.+. ...-+..... +..+.+... .+.
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~---G~~Vi~~~~~-~~k~~~~~~~lG-a~~vi~~~~~~~~~~~i~~~~~~g 228 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH---GCYVVGSAGS-SQKVDLLKNKLG-FDEAFNYKEEPDLDAALKRYFPEG 228 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc---CCEEEEEcCC-HHHHHHHHHhcC-CCEEEECCCcccHHHHHHHHCCCC
Confidence 33456788998887 77999999899875 6789999999 888887764443 2111222212 343433332 246
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+|++| |+-- . ..++.+... |++ ||.++....
T Consensus 229 vD~v~-d~vG--~---~~~~~~~~~--l~~-~G~iv~~G~ 259 (348)
T PLN03154 229 IDIYF-DNVG--G---DMLDAALLN--MKI-HGRIAVCGM 259 (348)
T ss_pred cEEEE-ECCC--H---HHHHHHHHH--hcc-CCEEEEECc
Confidence 89877 6654 2 356666776 665 676665443
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.13 Score=46.75 Aligned_cols=115 Identities=18% Similarity=0.175 Sum_probs=74.0
Q ss_pred CCChhHHHHHHHHHh---------hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCC
Q 042616 23 GKEPDVGEFISALAA---------GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYAN 93 (220)
Q Consensus 23 ~~~p~~~~~L~~La~---------~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~ 93 (220)
.++-++|.|+.-|+- -....+||-+|+|-+|..|+.-|+|+. ..+|+-+|.. +.+++.||+ +. . +
T Consensus 143 ~vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G--A~~VVi~d~~-~~Rle~Ak~-~G-a-~ 216 (354)
T KOG0024|consen 143 NVSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG--ASDVVITDLV-ANRLELAKK-FG-A-T 216 (354)
T ss_pred CCchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC--CCcEEEeecC-HHHHHHHHH-hC-C-e
Confidence 455556666655443 345688999999999999999999986 4899999999 999999999 54 1 1
Q ss_pred cEEEEEc--chhh---hhhhcC--CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 94 CIEFVKG--DAQK---LLMGDY--RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 94 ~Ve~v~g--da~~---~L~~~~--~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+..... ++.+ .+.... ..+|+.| ||.- ....++..... +++.|.++++.
T Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~-dCsG----~~~~~~aai~a--~r~gGt~vlvg 273 (354)
T KOG0024|consen 217 VTDPSSHKSSPQELAELVEKALGKKQPDVTF-DCSG----AEVTIRAAIKA--TRSGGTVVLVG 273 (354)
T ss_pred EEeeccccccHHHHHHHHHhhccccCCCeEE-EccC----chHHHHHHHHH--hccCCEEEEec
Confidence 1222221 1222 232222 3589887 4433 23455666666 66645555554
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.049 Score=43.59 Aligned_cols=82 Identities=13% Similarity=0.112 Sum_probs=54.4
Q ss_pred EEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCC-CccEEEEc------CCC----CCccHHHHHHHHH
Q 042616 69 RVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYR-GADFVLID------CNI----DIDGHKNVFRAAK 135 (220)
Q Consensus 69 rV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~-~~D~VfiD------~~k----~~~~y~~~l~~l~ 135 (220)
+|+++|+- +++++.+++.++ ++.++|++++..=+.+...+.. ++|+++.. +++ ........++.+.
T Consensus 1 kVyaFDIQ-~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQ-EEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES--HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECH-HHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 69999999 999999999997 6667899999876664433334 79999865 222 1134467788888
Q ss_pred hhcCCCCCCEEEEEecCCCCC
Q 042616 136 ESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 136 ~~~~L~~~Ggviv~dNv~~~g 156 (220)
++ |+| ||+|+. +.++|
T Consensus 80 ~l--L~~-gG~i~i--v~Y~G 95 (140)
T PF06962_consen 80 EL--LKP-GGIITI--VVYPG 95 (140)
T ss_dssp HH--EEE-EEEEEE--EE--S
T ss_pred Hh--hcc-CCEEEE--EEeCC
Confidence 88 876 888766 34444
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.14 Score=46.64 Aligned_cols=102 Identities=13% Similarity=0.120 Sum_probs=63.0
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEE--cchhhhhhhc-CCC
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVK--GDAQKLLMGD-YRG 112 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~--gda~~~L~~~-~~~ 112 (220)
...+.+.||-.|+|++|..++.+|++. +. +|++++.+ +++.+.|++. |....+.... .+..+.+..+ .+.
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~---G~~~vi~~~~~-~~~~~~a~~l--Ga~~~i~~~~~~~~~~~~v~~~~~~g 263 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLR---GASQIIGVDIN-PEKAEKAKTF--GVTDFINPNDLSEPIQQVIKRMTGGG 263 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEECCC-HHHHHHHHHc--CCcEEEcccccchHHHHHHHHHhCCC
Confidence 345678999999988999999999875 44 68999989 8888888653 3311122211 1333333332 236
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCC-EEEEEecC
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGA-GVIVGYNA 152 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~G-gviv~dNv 152 (220)
+|+|| |+-- ....+..+.+. +++ | |.++.-.+
T Consensus 264 ~d~vi-d~~G----~~~~~~~~l~~--l~~-g~G~iv~~G~ 296 (378)
T PLN02827 264 ADYSF-ECVG----DTGIATTALQS--CSD-GWGLTVTLGV 296 (378)
T ss_pred CCEEE-ECCC----ChHHHHHHHHh--hcc-CCCEEEEECC
Confidence 89776 5543 12345556665 655 5 78776543
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.13 Score=46.08 Aligned_cols=103 Identities=16% Similarity=0.102 Sum_probs=63.3
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc---chhhhhhhc--CCC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG---DAQKLLMGD--YRG 112 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g---da~~~L~~~--~~~ 112 (220)
..+.++||-.|+|.+|..++.+|++. +.+|++++.+ +++.+.+++. |....+..... +..+.+..+ ...
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~---G~~vi~~~~~-~~~~~~~~~~--Ga~~~i~~~~~~~~~~~~~~~~~t~~~g 237 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM---GAAVVAIDID-PEKLEMMKGF--GADLTLNPKDKSAREVKKLIKAFAKARG 237 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCeEEEEcCC-HHHHHHHHHh--CCceEecCccccHHHHHHHHHhhcccCC
Confidence 34568999999988999999999875 5689999999 8888888663 32111221121 222222222 134
Q ss_pred ccE---EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 113 ADF---VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 113 ~D~---VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+|. +++|+.- . ...++.+.+. |++ ||.++.-...
T Consensus 238 ~d~~~d~v~d~~g--~--~~~~~~~~~~--l~~-~G~iv~~G~~ 274 (349)
T TIGR03201 238 LRSTGWKIFECSG--S--KPGQESALSL--LSH-GGTLVVVGYT 274 (349)
T ss_pred CCCCcCEEEECCC--C--hHHHHHHHHH--Hhc-CCeEEEECcC
Confidence 652 5667765 2 3455556666 655 7776665443
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.14 Score=44.65 Aligned_cols=98 Identities=12% Similarity=0.119 Sum_probs=59.1
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFV 116 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~V 116 (220)
..+..+||..|+|.+|..++.+|.+. +.+|++++.+ ++..+.+++. +....+.....+..+.+... ...+|.+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~---G~~V~~~~~s-~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM---GAAVIAVDIK-EEKLELAKEL--GADEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc---CCEEEEEcCC-HHHHHHHHHh--CCCEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 44567888888877889888888875 6689999999 8888777552 22111111112222222111 3579965
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|+-. ....++.+.+. |++ +|.++.
T Consensus 237 -id~~g----~~~~~~~~~~~--l~~-~G~~v~ 261 (338)
T cd08254 237 -FDFVG----TQPTFEDAQKA--VKP-GGRIVV 261 (338)
T ss_pred -EECCC----CHHHHHHHHHH--hhc-CCEEEE
Confidence 56643 13456666776 665 666554
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.027 Score=52.99 Aligned_cols=59 Identities=10% Similarity=0.083 Sum_probs=49.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL 105 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~ 105 (220)
-.+|+|||| +|..++..+.|. +..|+++|.- ..+.+.||+... |.+++|.+++.-..++
T Consensus 68 v~vLdigtG-TGLLSmMAvrag---aD~vtA~Evf-kPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 68 VFVLDIGTG-TGLLSMMAVRAG---ADSVTACEVF-KPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEEccCC-ccHHHHHHHHhc---CCeEEeehhh-chHHHHHHHHHhcCCCccceeeecccccee
Confidence 356999997 999999877775 4579999999 999999999886 8889999988766553
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.053 Score=47.06 Aligned_cols=113 Identities=16% Similarity=0.111 Sum_probs=72.1
Q ss_pred CCCChhHHHHHHHHHh---hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHH-HHHHHhcccCCcEEE
Q 042616 22 RGKEPDVGEFISALAA---GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDID-ASKKSLGRYANCIEF 97 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~---~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~-~Ar~~l~g~~~~Ve~ 97 (220)
..+++.--.|..+|-. ..+.+.+||||++ ||-+|-.|.+-- ..+|++||.. ...+. .-|. ..+|..
T Consensus 58 ~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsS-TGGFTd~lLq~g---Ak~VyavDVG-~~Ql~~kLR~-----d~rV~~ 127 (245)
T COG1189 58 PYVSRGGLKLEKALEEFELDVKGKVVLDIGSS-TGGFTDVLLQRG---AKHVYAVDVG-YGQLHWKLRN-----DPRVIV 127 (245)
T ss_pred CccccHHHHHHHHHHhcCcCCCCCEEEEecCC-CccHHHHHHHcC---CcEEEEEEcc-CCccCHhHhc-----CCcEEE
Confidence 3455555455555532 3557899999984 999999888742 3689999998 33221 1222 245555
Q ss_pred EEc-chhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 98 VKG-DAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 98 v~g-da~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+.. ++..+-|.. .+..||+++|-.- -....+|..+... +.+ ++.++.
T Consensus 128 ~E~tN~r~l~~~~~~~~~d~~v~DvSF--ISL~~iLp~l~~l--~~~-~~~~v~ 176 (245)
T COG1189 128 LERTNVRYLTPEDFTEKPDLIVIDVSF--ISLKLILPALLLL--LKD-GGDLVL 176 (245)
T ss_pred EecCChhhCCHHHcccCCCeEEEEeeh--hhHHHHHHHHHHh--cCC-CceEEE
Confidence 443 343332222 3578999999988 7777788888887 654 666554
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.23 Score=44.82 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=55.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhH-HHHHHHHhcccCCcEEEEE-cchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGD-IDASKKSLGRYANCIEFVK-GDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~-~~~Ar~~l~g~~~~Ve~v~-gda~~~L~~~~~~~D~V 116 (220)
.+.++||-.|+|++|..++.+|++. +.+|+.++.+ ++. .+.+++ + |. + .++. .+..+ +....+.+|++
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~---Ga~vi~~~~~-~~~~~~~~~~-~-Ga-~--~vi~~~~~~~-~~~~~~~~D~v 251 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF---GLKVTVISSS-SNKEDEAINR-L-GA-D--SFLVSTDPEK-MKAAIGTMDYI 251 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCC-cchhhhHHHh-C-CC-c--EEEcCCCHHH-HHhhcCCCCEE
Confidence 3567888899988999999999875 5688888887 544 334333 2 22 1 1111 11112 22222468988
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
| |+-- ....++.+.+. |++ ||.++.-
T Consensus 252 i-d~~g----~~~~~~~~~~~--l~~-~G~iv~v 277 (360)
T PLN02586 252 I-DTVS----AVHALGPLLGL--LKV-NGKLITL 277 (360)
T ss_pred E-ECCC----CHHHHHHHHHH--hcC-CcEEEEe
Confidence 7 6643 12345666666 665 6666654
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.28 Score=46.75 Aligned_cols=133 Identities=14% Similarity=0.035 Sum_probs=91.1
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCC--CcEEEEEeCCchhHHHHHHHHhc--ccCCcE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQT--GGRVVCILSGVIGDIDASKKSLG--RYANCI 95 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~--~grV~tIE~d~~~~~~~Ar~~l~--g~~~~V 95 (220)
|+...+.++.++|..+....+.++|.|-.|| +|.+-+..+..+... ...++..|.+ +..+..|+.|+- +....+
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacG-sgg~l~~a~~~~~~~~~~~~~yGqE~~-~~t~~l~~mN~~lhgi~~~~ 243 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACG-SGGMLLQAAKYLKRHQDEIFIYGQEIN-DTTYRLAKMNLILHGIEGDA 243 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCc-hhHHHHHHHHHHHhhccceeEEEEeCC-HHHHHHHHHHHHHhCCCccc
Confidence 5677888899999999998777899999887 665555544444322 2678999999 999999999885 653356
Q ss_pred EEEEcchhhhhhh----cCCCccEEEEcCCC--------------------------CCccHHHHHHHHHhhcCCCC--C
Q 042616 96 EFVKGDAQKLLMG----DYRGADFVLIDCNI--------------------------DIDGHKNVFRAAKESVMHGS--G 143 (220)
Q Consensus 96 e~v~gda~~~L~~----~~~~~D~VfiD~~k--------------------------~~~~y~~~l~~l~~~~~L~~--~ 143 (220)
...++|...-... ....||+|+-..+- .+..+..++..+... |.| +
T Consensus 244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~--l~~~g~ 321 (489)
T COG0286 244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYK--LKPGGR 321 (489)
T ss_pred cccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHh--cCCCce
Confidence 6777765443212 12568877533222 012334456667776 665 3
Q ss_pred CEEEEEecCCCCC
Q 042616 144 AGVIVGYNALPKG 156 (220)
Q Consensus 144 Ggviv~dNv~~~g 156 (220)
.|+|+.++++++|
T Consensus 322 aaivl~~gvlfr~ 334 (489)
T COG0286 322 AAIVLPDGVLFRG 334 (489)
T ss_pred EEEEecCCcCcCC
Confidence 5789999999986
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.11 Score=45.74 Aligned_cols=88 Identities=16% Similarity=0.061 Sum_probs=57.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
+.+++|-+|+|++|..++.+|++. +.+ |++++.+ +++++.|++.. .+ |..+. ....+|+||
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~---G~~~v~~~~~~-~~rl~~a~~~~-----~i-----~~~~~---~~~g~Dvvi- 205 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAA---GGSPPAVWETN-PRRRDGATGYE-----VL-----DPEKD---PRRDYRAIY- 205 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc---CCceEEEeCCC-HHHHHhhhhcc-----cc-----Chhhc---cCCCCCEEE-
Confidence 456899899999999999999875 444 7778888 88777665431 01 11110 124689776
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+-- . ...++.+.+. +++ ||.++.-..
T Consensus 206 d~~G--~--~~~~~~~~~~--l~~-~G~iv~~G~ 232 (308)
T TIGR01202 206 DASG--D--PSLIDTLVRR--LAK-GGEIVLAGF 232 (308)
T ss_pred ECCC--C--HHHHHHHHHh--hhc-CcEEEEEee
Confidence 6644 2 2356677776 765 777776543
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.062 Score=46.82 Aligned_cols=95 Identities=9% Similarity=0.076 Sum_probs=69.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcchhhhhhhcCCCccEEEEcC
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQKLLMGDYRGADFVLIDC 120 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~ 120 (220)
..+++|||+ .|+..-.|-.- .-++++-+|.+ -.+++.++..-. ++ .+...++| +++|+.-++++|+|+---
T Consensus 74 p~a~diGcs-~G~v~rhl~~e---~vekli~~DtS-~~M~~s~~~~qdp~i--~~~~~v~D-EE~Ldf~ens~DLiisSl 145 (325)
T KOG2940|consen 74 PTAFDIGCS-LGAVKRHLRGE---GVEKLIMMDTS-YDMIKSCRDAQDPSI--ETSYFVGD-EEFLDFKENSVDLIISSL 145 (325)
T ss_pred cceeecccc-hhhhhHHHHhc---chhheeeeecc-hHHHHHhhccCCCce--EEEEEecc-hhcccccccchhhhhhhh
Confidence 568999986 99988876542 25899999999 888888776543 22 25556677 566765568999998543
Q ss_pred ---CCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 121 ---NIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 121 ---~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+. .+.+.++..++.. |+| .|++++
T Consensus 146 slHW~--NdLPg~m~~ck~~--lKP-Dg~Fia 172 (325)
T KOG2940|consen 146 SLHWT--NDLPGSMIQCKLA--LKP-DGLFIA 172 (325)
T ss_pred hhhhh--ccCchHHHHHHHh--cCC-Cccchh
Confidence 33 4568889999998 887 666655
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.061 Score=47.00 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=62.5
Q ss_pred hhHHHHHHHHhcCCC---CCChhHHHHHHHHHhhCC-CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHH
Q 042616 8 NATKAYLQALKMGKR---GKEPDVGEFISALAAGNN-AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDA 83 (220)
Q Consensus 8 ~a~~aY~~~l~~~~~---~~~p~~~~~L~~La~~~~-a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~ 83 (220)
.+.++++..+-..+. ---|..-+|+..+-...+ +.+|+||||| .-..|+.... .. ++.+++++|+| .+.++.
T Consensus 69 e~~~~~~r~lL~~HaST~ERl~~Ld~fY~~if~~~~~p~sVlDigCG-lNPlalp~~~-~~-~~a~Y~a~DID-~~~ve~ 144 (251)
T PF07091_consen 69 EAIRAWCRRLLAGHASTRERLPNLDEFYDEIFGRIPPPDSVLDIGCG-LNPLALPWMP-EA-PGATYIAYDID-SQLVEF 144 (251)
T ss_dssp HHHHHHHHHHHHTSHHHHCCGGGHHHHHHHHCCCS---SEEEEET-T-TCHHHHHTTT-SS-TT-EEEEEESB-HHHHHH
T ss_pred HHHHHHHHHHHhhccchhhhhhhHHHHHHHHHhcCCCCchhhhhhcc-CCceehhhcc-cC-CCcEEEEEeCC-HHHHHH
Confidence 344555555322220 113445566666666544 8999999996 5666663332 22 26799999999 999999
Q ss_pred HHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 84 SKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 84 Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
..+.+.-+.-..++...|...-.| ....|+.++
T Consensus 145 l~~~l~~l~~~~~~~v~Dl~~~~~--~~~~DlaLl 177 (251)
T PF07091_consen 145 LNAFLAVLGVPHDARVRDLLSDPP--KEPADLALL 177 (251)
T ss_dssp HHHHHHHTT-CEEEEEE-TTTSHT--TSEESEEEE
T ss_pred HHHHHHhhCCCcceeEeeeeccCC--CCCcchhhH
Confidence 999887333345666666655443 356898885
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.072 Score=46.99 Aligned_cols=117 Identities=13% Similarity=0.116 Sum_probs=68.5
Q ss_pred HHHhhCCCCEEEEEcCCchHH-HHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhccc-CCcEEEEEcchhh---hhh-
Q 042616 34 ALAAGNNAQLIVMACSSIAVS-RTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRY-ANCIEFVKGDAQK---LLM- 107 (220)
Q Consensus 34 ~La~~~~a~~ILEIGtg~~G~-sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~-~~~Ve~v~gda~~---~L~- 107 (220)
.|+...+-+-.||||||-.-. .+--.|++..+ +.||+.||.| |-.+..+|..+.+- ..+..++++|..+ +|.
T Consensus 62 ~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P-~aRVVYVD~D-Pvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~ 139 (267)
T PF04672_consen 62 YLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAP-DARVVYVDND-PVVLAHARALLADNPRGRTAYVQADLRDPEAILAH 139 (267)
T ss_dssp HHHCTT---EEEEET--S--SS-HHHHHHHH-T-T-EEEEEESS-HHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCS
T ss_pred HHHHhcCcceEEEcccCCCCCCCHhHHHHhhCC-CceEEEECCC-chHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcC
Confidence 344444678899999862111 34457777776 8999999999 99999999999832 2358999998754 342
Q ss_pred -hc------CCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 108 -GD------YRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 108 -~~------~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
.. ..++=++++.--+ +.++...+++.+... |. +|+.|+.-.....
T Consensus 140 p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~--la-pGS~L~ish~t~d 194 (267)
T PF04672_consen 140 PEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDA--LA-PGSYLAISHATDD 194 (267)
T ss_dssp HHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCC--S--TT-EEEEEEEB-T
T ss_pred HHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHh--CC-CCceEEEEecCCC
Confidence 11 2455566554311 225678889999998 75 5999888766654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.32 Score=43.78 Aligned_cols=102 Identities=21% Similarity=0.233 Sum_probs=63.3
Q ss_pred hhCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcC--CCc
Q 042616 37 AGNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDY--RGA 113 (220)
Q Consensus 37 ~~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~--~~~ 113 (220)
.....+.||-.| +|++|..++.||+++ +++++.+-.. ++..+.+++.- ...-|.....|..+-+.++. ..+
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~---G~~~v~~~~s-~~k~~~~~~lG--Ad~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKAL---GATVVAVVSS-SEKLELLKELG--ADHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHc---CCcEEEEecC-HHHHHHHHhcC--CCEEEcCCcccHHHHHHHHcCCCCc
Confidence 355679999998 678999999999986 4477777676 56555555443 22235566666666554443 369
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|+|| |+-- .+.+...... |++ +|.++.-...
T Consensus 213 Dvv~-D~vG-----~~~~~~~l~~--l~~-~G~lv~ig~~ 243 (326)
T COG0604 213 DVVL-DTVG-----GDTFAASLAA--LAP-GGRLVSIGAL 243 (326)
T ss_pred eEEE-ECCC-----HHHHHHHHHH--hcc-CCEEEEEecC
Confidence 9987 3333 2344445555 555 4555554443
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.31 Score=42.49 Aligned_cols=100 Identities=11% Similarity=0.087 Sum_probs=62.6
Q ss_pred HHhhCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCC
Q 042616 35 LAAGNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRG 112 (220)
Q Consensus 35 La~~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~ 112 (220)
++...+.+.||-.| +|++|..++.+|++. |.+|+++..+ ++..+.+++ + |...-+.....+..+.+... .+.
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~---G~~vi~~~~s-~~~~~~l~~-~-Ga~~vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIK---GCKVIGCAGS-DDKVAWLKE-L-GFDAVFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHH-c-CCCEEEeCCCccHHHHHHHHCCCC
Confidence 34456678898888 477898888888875 6689999999 888888876 3 33111222223333333222 346
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|+|| |+-- . ..++.+.+. |++ +|.++.
T Consensus 212 vd~vl-d~~g--~---~~~~~~~~~--l~~-~G~iv~ 239 (329)
T cd08294 212 IDCYF-DNVG--G---EFSSTVLSH--MND-FGRVAV 239 (329)
T ss_pred cEEEE-ECCC--H---HHHHHHHHh--hcc-CCEEEE
Confidence 99776 6654 2 445666666 665 566554
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.35 Score=44.77 Aligned_cols=149 Identities=17% Similarity=0.121 Sum_probs=83.8
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+.-.|....+=..|++..++..++-..+| .+..+..|...+++ |.+|++.+.-=.......+..+....-.++++..
T Consensus 50 ~R~gnPt~~~le~~la~Le~g~~a~~~~SG-maAi~~~l~~ll~~-Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~ 127 (386)
T PF01053_consen 50 SRYGNPTVRALEQRLAALEGGEDALLFSSG-MAAISAALLALLKP-GDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDP 127 (386)
T ss_dssp TTTC-HHHHHHHHHHHHHHT-SEEEEESSH-HHHHHHHHHHHS-T-TBEEEEESSSSHHHHHHHHHCHHHTTSEEEEEST
T ss_pred eccccccHHHHHHHHHHhhcccceeeccch-HHHHHHHHHhhccc-CCceEecCCccCcchhhhhhhhcccCcEEEEeCc
Confidence 367889999999999999999888877654 55555555555555 8898887654234444555555432223555544
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCC-EEEEEecCCCCCCccceEEEeeecCCcEEEEEEe
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGA-GVIVGYNALPKGSWRGYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~G-gviv~dNv~~~g~~~~~~s~~lPig~Gl~v~~~~ 178 (220)
|..++-..+.+..++||+..+.....-...++.+.+. .+..| .++|+||.+-.. ..+-|+.-|..|..-.
T Consensus 128 ~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~--a~~~g~~~~vVDnT~atp------~~~~pL~~GaDivv~S 199 (386)
T PF01053_consen 128 TDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKL--AKEHGDILVVVDNTFATP------YNQNPLELGADIVVHS 199 (386)
T ss_dssp TSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHH--HHHTTT-EEEEECTTTHT------TTC-GGGGT-SEEEEE
T ss_pred hhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHH--HHHhCCceEEeeccccce------eeeccCcCCceEEEee
Confidence 3344433335689999999886221112223333322 22347 999999998421 1113555555555554
Q ss_pred e
Q 042616 179 E 179 (220)
Q Consensus 179 ~ 179 (220)
.
T Consensus 200 ~ 200 (386)
T PF01053_consen 200 A 200 (386)
T ss_dssp T
T ss_pred c
Confidence 4
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.4 Score=42.15 Aligned_cols=102 Identities=13% Similarity=0.078 Sum_probs=63.2
Q ss_pred HHhhCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc-chhhhhhhc-CC
Q 042616 35 LAAGNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG-DAQKLLMGD-YR 111 (220)
Q Consensus 35 La~~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g-da~~~L~~~-~~ 111 (220)
.+...+.++||-.| +|++|..++.+|++. |.+|+++..+ ++..+.+++ + |...-+..... +..+.+... .+
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~---G~~Vi~~~~s-~~~~~~~~~-l-Ga~~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLK---GCKVVGAAGS-DEKVAYLKK-L-GFDVAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHH-c-CCCEEEeccccccHHHHHHHhCCC
Confidence 34455678998888 467888888888874 6789999999 888888765 3 32111222221 233333222 24
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
.+|++| |+-- . ..++.+... |++ ||.++...
T Consensus 207 gvdvv~-d~~G--~---~~~~~~~~~--l~~-~G~iv~~G 237 (325)
T TIGR02825 207 GYDCYF-DNVG--G---EFSNTVIGQ--MKK-FGRIAICG 237 (325)
T ss_pred CeEEEE-ECCC--H---HHHHHHHHH--hCc-CcEEEEec
Confidence 699877 6654 2 235666666 665 77777654
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.24 Score=44.27 Aligned_cols=98 Identities=10% Similarity=0.016 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeC---CchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILS---GVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~---d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
.+.++||-+|+|++|..++.+|+++ +.+|++++. + +++.+.+++. |. +.+.....+..+ . .....+|+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~---G~~vi~~~~~~~~-~~~~~~~~~~--Ga-~~v~~~~~~~~~-~-~~~~~~d~ 241 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR---GFEVYVLNRRDPP-DPKADIVEEL--GA-TYVNSSKTPVAE-V-KLVGEFDL 241 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc---CCeEEEEecCCCC-HHHHHHHHHc--CC-EEecCCccchhh-h-hhcCCCCE
Confidence 3568899999999999999999875 558999987 6 6777777653 22 112111122222 1 11357897
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
||--... ...+..+.+. +++ ||.++.-...
T Consensus 242 vid~~g~-----~~~~~~~~~~--l~~-~G~~v~~G~~ 271 (355)
T cd08230 242 IIEATGV-----PPLAFEALPA--LAP-NGVVILFGVP 271 (355)
T ss_pred EEECcCC-----HHHHHHHHHH--ccC-CcEEEEEecC
Confidence 7643332 2356666676 665 7777665443
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.31 Score=43.02 Aligned_cols=95 Identities=18% Similarity=0.136 Sum_probs=59.1
Q ss_pred CEEEEEcC-CchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEE
Q 042616 42 QLIVMACS-SIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLI 118 (220)
Q Consensus 42 ~~ILEIGt-g~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~Vfi 118 (220)
++||-.|. |++|..++.+|++. +. +|++++.+ ++..+.+++.+. ....+.....+..+.+..+ ...+|++|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~---G~~~Vi~~~~s-~~~~~~~~~~lG-a~~vi~~~~~~~~~~i~~~~~~gvd~vi- 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL---GCSRVVGICGS-DEKCQLLKSELG-FDAAINYKTDNVAERLRELCPEGVDVYF- 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc---CCCEEEEEcCC-HHHHHHHHHhcC-CcEEEECCCCCHHHHHHHHCCCCceEEE-
Confidence 78988885 77898888888874 55 79999999 888887776443 2111222222333333222 24699887
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+-- .. .++.+.+. |++ +|.++.-
T Consensus 230 d~~g--~~---~~~~~~~~--l~~-~G~iv~~ 253 (345)
T cd08293 230 DNVG--GE---ISDTVISQ--MNE-NSHIILC 253 (345)
T ss_pred ECCC--cH---HHHHHHHH--hcc-CCEEEEE
Confidence 6654 22 24666666 665 6666653
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.42 Score=42.29 Aligned_cols=101 Identities=16% Similarity=0.164 Sum_probs=63.4
Q ss_pred HhhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc-chhhhhhhc-CCC
Q 042616 36 AAGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG-DAQKLLMGD-YRG 112 (220)
Q Consensus 36 a~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g-da~~~L~~~-~~~ 112 (220)
+...+.++||-.|+ |++|..++.+|++. |.+|+++..+ ++..+.+++.+. ....+..... +..+.+... ...
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~---G~~Vi~~~~~-~~~~~~~~~~lG-a~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLK---GCYVVGSAGS-DEKVDLLKNKLG-FDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHhcC-CceeEEcCCcccHHHHHHHhCCCC
Confidence 34556789998886 67888888888875 6789999999 888888877443 2111221111 333333222 257
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+|++| |+-- . ..+..+.+. |++ +|.++..
T Consensus 222 vd~v~-d~~g--~---~~~~~~~~~--l~~-~G~iv~~ 250 (338)
T cd08295 222 IDIYF-DNVG--G---KMLDAVLLN--MNL-HGRIAAC 250 (338)
T ss_pred cEEEE-ECCC--H---HHHHHHHHH--hcc-CcEEEEe
Confidence 99887 6654 2 345666666 665 6666654
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.024 Score=52.28 Aligned_cols=98 Identities=17% Similarity=0.218 Sum_probs=77.9
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
..++.....-|..+++....+..|++++| ..|..|..+|.-++. -|++.+.|.+ +.+++.-++.++ |. ..++.+
T Consensus 194 ~~ilqd~asclpA~ll~p~~g~~v~d~ca-apg~KTsH~a~i~~n-~gki~afe~d-~~r~~tl~~~l~~ag~-~~~~~~ 269 (413)
T KOG2360|consen 194 KFILQDKASCLPAHLLDPRPGSRVIDTCA-APGNKTSHLAAIMRN-QGKIYAFERD-AKRAATLRKLLKIAGV-SIVESV 269 (413)
T ss_pred ceEEechhhcchhhhcCCCCCCceeeecc-ccccchhhHHHHhhc-cCCcchhhhh-hHHHHHHHHHHHHcCC-Cccccc
Confidence 34555555667788888888899999987 699999999987765 8999999999 999999999887 65 568888
Q ss_pred Ecchhhh-hhhcCCCccEEEEcCCC
Q 042616 99 KGDAQKL-LMGDYRGADFVLIDCNI 122 (220)
Q Consensus 99 ~gda~~~-L~~~~~~~D~VfiD~~k 122 (220)
++|+... -|......-+|++|..-
T Consensus 270 ~~df~~t~~~~~~~~v~~iL~Dpsc 294 (413)
T KOG2360|consen 270 EGDFLNTATPEKFRDVTYILVDPSC 294 (413)
T ss_pred cccccCCCCcccccceeEEEeCCCC
Confidence 9998874 23334667788888654
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.39 Score=43.22 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=61.4
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEc--chhhhhhhc-CCCc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKG--DAQKLLMGD-YRGA 113 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g--da~~~L~~~-~~~~ 113 (220)
..+.++||-+|+|++|..++.+|+++ +. +|++++.+ +++.+.+++. |...-+....- +..+.+..+ ...+
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~---G~~~Vi~~~~~-~~~~~~~~~~--ga~~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIA---GASRIIGVDIN-EDKFEKAKEF--GATDFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCC-HHHHHHHHHc--CCCcEeccccccchHHHHHHHHhCCCC
Confidence 45678999889988999999899875 45 79999999 8888888653 22111221111 112222221 2468
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+|| |+.- . ...++.+... +++.+|.++.-..
T Consensus 256 d~vi-d~~g--~--~~~~~~~~~~--l~~~~G~~v~~g~ 287 (365)
T cd08277 256 DYSF-ECTG--N--ADLMNEALES--TKLGWGVSVVVGV 287 (365)
T ss_pred CEEE-ECCC--C--hHHHHHHHHh--cccCCCEEEEEcC
Confidence 9776 5543 2 2345666666 6553366555433
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.45 Score=42.98 Aligned_cols=102 Identities=18% Similarity=0.188 Sum_probs=61.7
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEE--cchhhhhhhc-CCCc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVK--GDAQKLLMGD-YRGA 113 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~--gda~~~L~~~-~~~~ 113 (220)
....+.||-.|+|++|..++.+|+++ +. +|++++.+ +++.+.|++. |....+.... .+..+.+.++ .+.+
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~---G~~~Vi~~~~~-~~~~~~a~~~--Ga~~~i~~~~~~~~~~~~v~~~~~~g~ 256 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMA---KASRIIAIDIN-PAKFELAKKL--GATDCVNPNDYDKPIQEVIVEITDGGV 256 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCC-HHHHHHHHHh--CCCeEEcccccchhHHHHHHHHhCCCC
Confidence 45578999999988999999999875 55 79999999 9998888663 2211122111 1122222222 2368
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|++| |+-- . ...+..+... +++.+|.++.-..
T Consensus 257 d~vi-d~~G--~--~~~~~~~~~~--~~~~~G~~v~~g~ 288 (368)
T TIGR02818 257 DYSF-ECIG--N--VNVMRAALEC--CHKGWGESIIIGV 288 (368)
T ss_pred CEEE-ECCC--C--HHHHHHHHHH--hhcCCCeEEEEec
Confidence 9776 6543 1 2345555555 5543366655433
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >TIGR01007 eps_fam capsular exopolysaccharide family | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.37 Score=39.79 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=30.3
Q ss_pred CCCCEEEEEcC-CchHHHHH--HHHHHcCCCCcEEEEEeCCchhHHHH
Q 042616 39 NNAQLIVMACS-SIAVSRTL--ALVAAARQTGGRVVCILSGVIGDIDA 83 (220)
Q Consensus 39 ~~a~~ILEIGt-g~~G~sTl--~LA~A~~~~~grV~tIE~d~~~~~~~ 83 (220)
.+++.|.-.++ |++|-+|+ .||.++...+.+|.-||.| +..-..
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D-~~~~~l 61 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD-MRNSVM 61 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC-CCChhH
Confidence 34666665544 45777665 5788877767899999999 765443
|
This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. |
| >TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.55 Score=41.88 Aligned_cols=71 Identities=20% Similarity=0.133 Sum_probs=44.3
Q ss_pred hHHHHHHHHhcCCC---CCChhHHHHHHHHHhhC-----CCCEEEEEcC-CchHHHHHH--HHHHcCCCCcEEEEEeCCc
Q 042616 9 ATKAYLQALKMGKR---GKEPDVGEFISALAAGN-----NAQLIVMACS-SIAVSRTLA--LVAAARQTGGRVVCILSGV 77 (220)
Q Consensus 9 a~~aY~~~l~~~~~---~~~p~~~~~L~~La~~~-----~a~~ILEIGt-g~~G~sTl~--LA~A~~~~~grV~tIE~d~ 77 (220)
....|...+..+.. ..+.+..++...+.+.. +++.|.-+|. ||+|-||+. ||.++...+.+|.-||.|
T Consensus 53 ~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~~~~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D- 131 (322)
T TIGR03815 53 GGALWRAAAAVGAEHVAVLPEAEGWLVELLADLDQSPPARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDAD- 131 (322)
T ss_pred CHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhccCCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecC-
Confidence 34456666666542 23334455555555442 2455655654 779999964 777777656789999998
Q ss_pred hhH
Q 042616 78 IGD 80 (220)
Q Consensus 78 ~~~ 80 (220)
+..
T Consensus 132 ~~~ 134 (322)
T TIGR03815 132 PWG 134 (322)
T ss_pred CCC
Confidence 663
|
Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.79 Score=40.78 Aligned_cols=94 Identities=12% Similarity=-0.027 Sum_probs=59.6
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
...+.++||-.|+|++|..++.+|++. +.+|++++.+ +++.+.|++. |....+.. .+.. .+.+|++
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~---G~~vi~~~~~-~~~~~~a~~~--Ga~~vi~~-----~~~~---~~~~d~~ 227 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQ---GATVHVMTRG-AAARRLALAL--GAASAGGA-----YDTP---PEPLDAA 227 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHC---CCeEEEEeCC-hHHHHHHHHh--CCceeccc-----cccC---cccceEE
Confidence 345568999999887888888888874 6689999999 8888888774 22111110 0100 2357876
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+..... . ..+....+. |++ ||.++.-..
T Consensus 228 i~~~~~--~---~~~~~~~~~--l~~-~G~~v~~G~ 255 (329)
T TIGR02822 228 ILFAPA--G---GLVPPALEA--LDR-GGVLAVAGI 255 (329)
T ss_pred EECCCc--H---HHHHHHHHh--hCC-CcEEEEEec
Confidence 543333 2 356667776 765 777666544
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.16 Score=46.20 Aligned_cols=104 Identities=15% Similarity=0.066 Sum_probs=64.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---ccCC----cEEEEEcchhh-hhhhc-
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---RYAN----CIEFVKGDAQK-LLMGD- 109 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---g~~~----~Ve~v~gda~~-~L~~~- 109 (220)
.+..-++++|||=-|=.--|...+ -+.++|||+. +.-++.|++..+ +..+ .++|+.||... .|..+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg----I~~~igiDIA-evSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~ 190 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG----IGEYIGIDIA-EVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL 190 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc----ccceEeeehh-hccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc
Confidence 455678889997334443455432 4799999999 888888887664 3322 48999999743 23222
Q ss_pred --CCC-ccEEEEc-----CCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 110 --YRG-ADFVLID-----CNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 110 --~~~-~D~VfiD-----~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..+ ||+|=.- +....+.-...++.+.++ |+| ||+.+.-
T Consensus 191 e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~--Lkp-GG~FIgT 236 (389)
T KOG1975|consen 191 EFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKC--LKP-GGVFIGT 236 (389)
T ss_pred cCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhh--cCC-CcEEEEe
Confidence 234 8987322 111112334457777777 876 9998873
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.56 Score=42.15 Aligned_cols=105 Identities=14% Similarity=0.129 Sum_probs=62.4
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEE--cchhhhhhhc-CC
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVK--GDAQKLLMGD-YR 111 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~--gda~~~L~~~-~~ 111 (220)
+...+.+.||-.|+|++|..++.+|+++ +. +|++++.+ +++.+.+++. |....+.... .+..+.+..+ .+
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~---G~~~vi~~~~~-~~~~~~~~~~--Ga~~~i~~~~~~~~~~~~v~~~~~~ 256 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIR---GASRIIGVDLN-PSKFEQAKKF--GVTEFVNPKDHDKPVQEVIAEMTGG 256 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCC-HHHHHHHHHc--CCceEEcccccchhHHHHHHHHhCC
Confidence 3455678999999988999999999875 44 89999999 8888888652 2211122211 1122223222 24
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+|++| |+-- . ...+..+... +++.+|.++.-...
T Consensus 257 ~~d~vi-d~~G--~--~~~~~~~~~~--~~~~~g~~v~~g~~ 291 (369)
T cd08301 257 GVDYSF-ECTG--N--IDAMISAFEC--VHDGWGVTVLLGVP 291 (369)
T ss_pred CCCEEE-ECCC--C--hHHHHHHHHH--hhcCCCEEEEECcC
Confidence 689554 6643 1 2344555555 55423676655443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.75 Score=40.57 Aligned_cols=99 Identities=18% Similarity=0.147 Sum_probs=58.6
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~ 115 (220)
..+.++||-+|+|++|..++.+|++. +.+ |++++.+ +++.+.+++. |....+.....+...+.... ...+|+
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~---G~~~vi~~~~~-~~~~~~~~~~--ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARAL---GAEDVIGVDPS-PERLELAKAL--GADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCC-HHHHHHHHHh--CCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 35578999999988999998888875 556 9999999 8888887653 22111222122222222111 236998
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+| |+.- . ...+....+. |++ +|.++.-
T Consensus 235 vi-d~~g--~--~~~~~~~~~~--l~~-~G~~v~~ 261 (339)
T cd08239 235 AI-ECSG--N--TAARRLALEA--VRP-WGRLVLV 261 (339)
T ss_pred EE-ECCC--C--HHHHHHHHHH--hhc-CCEEEEE
Confidence 76 5533 1 2234444555 555 6666543
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.62 Score=42.38 Aligned_cols=106 Identities=15% Similarity=0.080 Sum_probs=65.5
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc-hhhhhhhc--CCC
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD-AQKLLMGD--YRG 112 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd-a~~~L~~~--~~~ 112 (220)
+...+.+.||.+|+|.+|..++.+|++.. .+++++++.+ +++.+.+++.. +. ..+.....+ ..+.+..+ ...
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g--~~~vi~~~~~-~~~~~~~~~~~-~~-~vi~~~~~~~~~~~l~~~~~~~~ 254 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLG--AERVIAIDRV-PERLEMARSHL-GA-ETINFEEVDDVVEALRELTGGRG 254 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCC-HHHHHHHHHcC-Cc-EEEcCCcchHHHHHHHHHcCCCC
Confidence 34456788999999877999999999863 2479999999 99999888864 22 223333332 33323222 236
Q ss_pred ccEEEEcCCCC-----------------CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 113 ADFVLIDCNID-----------------IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 113 ~D~VfiD~~k~-----------------~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+|++| |+--. ..+....++.+.+. +++ +|.++.-
T Consensus 255 ~D~vl-d~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~-~G~iv~~ 305 (386)
T cd08283 255 PDVCI-DAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQA--VRK-GGTVSII 305 (386)
T ss_pred CCEEE-ECCCCcccccccccccccccccccCchHHHHHHHHH--hcc-CCEEEEE
Confidence 99775 44310 01124467777777 766 5655543
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.81 Score=40.14 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=63.4
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcE-EEEE-cchhhhhhhcCCCc
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCI-EFVK-GDAQKLLMGDYRGA 113 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~V-e~v~-gda~~~L~~~~~~~ 113 (220)
+...+.++||-.|+|++|..++.+|.+.. +.+|+++..+ ++..+.+++ + |. +.+ .... .+..+.+....+.+
T Consensus 158 ~~~~~g~~vlV~g~g~vG~~~~~la~~~~--g~~v~~~~~~-~~~~~~~~~-~-g~-~~v~~~~~~~~~~~~v~~~~~~~ 231 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKNVF--NAKVIAVDIN-DDKLALAKE-V-GA-DLTINSKRVEDVAKIIQEKTGGA 231 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHhC--CCeEEEEeCC-hHHHHHHHH-c-CC-cEEecccccccHHHHHHHhcCCC
Confidence 34456788988898889999988888632 6789999999 888888854 3 32 221 1111 12223332333468
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|++|+++.. . ..++.+.+. |++ +|.++.
T Consensus 232 d~vi~~~~~--~---~~~~~~~~~--l~~-~G~~v~ 259 (338)
T PRK09422 232 HAAVVTAVA--K---AAFNQAVDA--VRA-GGRVVA 259 (338)
T ss_pred cEEEEeCCC--H---HHHHHHHHh--ccC-CCEEEE
Confidence 988888754 2 346667776 655 555553
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=1.6 Score=40.63 Aligned_cols=130 Identities=11% Similarity=0.038 Sum_probs=72.7
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD 101 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd 101 (220)
+.-.|....|=..++...++...+-+.+| .+..+..+..-+++ |.+|++.++.-.......++.++.+.-.++++..+
T Consensus 60 R~gnPt~~~Le~~la~le~~~~~v~~sSG-~aAi~~~l~all~~-GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~ 137 (395)
T PRK05967 60 TRGTPTTDALCKAIDALEGSAGTILVPSG-LAAVTVPFLGFLSP-GDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPE 137 (395)
T ss_pred CCCChHHHHHHHHHHHHhCCCCEEEECcH-HHHHHHHHHHhcCC-CCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCC
Confidence 45677666666666665555444545544 44433333333554 88999987772333334444454332346666433
Q ss_pred hhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 102 AQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 102 a~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
..+.+... .+...+|++..+...-.....++.+.+. .+..|.++|+||++..
T Consensus 138 ~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~l--a~~~g~~vvVD~t~a~ 190 (395)
T PRK05967 138 IGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEA--AHRHGAIVMMDNTWAT 190 (395)
T ss_pred CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHH--HHHhCCEEEEECCccC
Confidence 22333332 3567899999765212223345555554 3345899999999853
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.93 Score=41.51 Aligned_cols=130 Identities=11% Similarity=0.031 Sum_probs=73.0
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+.-.|...+|-..++...+.+..+-+++| .+...+.++ .+.+ +.+|++.++.=+.......+.+....-.+.++..
T Consensus 45 ~r~~~p~~~~Le~~lA~l~g~~~~~~~~sG-~aai~~~~~-~l~~-Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 121 (377)
T PRK07671 45 SRTGNPTRAALEELIAVLEGGHAGFAFGSG-MAAITAVMM-LFSS-GDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDT 121 (377)
T ss_pred CCCCChHHHHHHHHHHHHhCCCceEEeCCH-HHHHHHHHH-HhCC-CCEEEECCCccchHHHHHHHHHhcCCeEEEEECC
Confidence 356788899999999998877776667764 444433333 3444 7889887765122344333333322123444433
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+.+...+|++..+....-....++.+.+. .+..|..+|+||++..
T Consensus 122 ~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~l--a~~~g~~lvvD~a~~~ 175 (377)
T PRK07671 122 SNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTI--AKEKGLLTIVDNTFMT 175 (377)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHH--HHHcCCEEEEECCCCc
Confidence 4455443334567899987665111011122333332 2234899999999753
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.67 Score=42.08 Aligned_cols=104 Identities=14% Similarity=0.124 Sum_probs=62.5
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEE--cchhhhhhhc-CC
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVK--GDAQKLLMGD-YR 111 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~--gda~~~L~~~-~~ 111 (220)
+...+.++||-+|+|++|..++.+|++. +. +|++++.+ +++.+.|++. |....+.... .+..+.+..+ .+
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~---G~~~Vi~~~~~-~~r~~~a~~~--Ga~~~i~~~~~~~~~~~~v~~~~~~ 267 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARAR---GASKIIGVDIN-PEKFEKGKEM--GITDFINPKDSDKPVHERIREMTGG 267 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC---CCCcEEEEcCC-hHHHHHHHHc--CCcEEEecccccchHHHHHHHHhCC
Confidence 3445678999999988999999999875 45 79999999 9999988763 3211122111 1233333222 23
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.+|++| |+-- . ...++..... +++.+|.++.-..
T Consensus 268 g~dvvi-d~~G--~--~~~~~~a~~~--~~~g~G~~v~~G~ 301 (381)
T PLN02740 268 GVDYSF-ECAG--N--VEVLREAFLS--THDGWGLTVLLGI 301 (381)
T ss_pred CCCEEE-ECCC--C--hHHHHHHHHh--hhcCCCEEEEEcc
Confidence 699765 5543 1 2345555555 5443266655443
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.061 Score=49.50 Aligned_cols=108 Identities=10% Similarity=0.015 Sum_probs=76.9
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
...++.+++++||| +|-.+..++.- ....++.++.+ +..+..+..... .+.++-.++.+|..+-. .-++.||
T Consensus 107 ~~~~~~~~~~~~~g-~~~~~~~i~~f---~~~~~~Gl~~n-~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~-fedn~fd 180 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTG-VGGPSRYIAVF---KKAGVVGLDNN-AYEAFRANELAKKAYLDNKCNFVVADFGKMP-FEDNTFD 180 (364)
T ss_pred cCcccccccccCcC-cCchhHHHHHh---ccCCccCCCcC-HHHHHHHHHHHHHHHhhhhcceehhhhhcCC-CCccccC
Confidence 34555679999997 78777777764 15788888888 666655555443 55555555777776632 3257899
Q ss_pred EE-EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 115 FV-LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 115 ~V-fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
++ |+|......+....+..+.+. ++| ||+.++....
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv--~kp-GG~~i~~e~i 217 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRV--LKP-GGLFIVKEWI 217 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcc--cCC-CceEEeHHHH
Confidence 88 677766557888889999998 876 9999998765
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.18 E-value=1.2 Score=38.46 Aligned_cols=99 Identities=20% Similarity=0.104 Sum_probs=60.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D~ 115 (220)
.+.+.||-+|+|.+|..++.+|++. +. +|+.++.+ +++.+.|++. |....+.. .+..+.+..+ ...+|+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~---G~~~Vi~~~~~-~~r~~~a~~~--Ga~~~i~~--~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAA---GAARVVAADPS-PDRRELALSF--GATALAEP--EVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCC-HHHHHHHHHc--CCcEecCc--hhhHHHHHHHhCCCCCCE
Confidence 3567899999988999999999875 44 48999999 8888888774 22111111 1111222122 246898
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+| |+-- . ...++.+.+. +++ ||.++.-...
T Consensus 191 vi-d~~G--~--~~~~~~~~~~--l~~-~G~iv~~G~~ 220 (280)
T TIGR03366 191 AL-EFSG--A--TAAVRACLES--LDV-GGTAVLAGSV 220 (280)
T ss_pred EE-ECCC--C--hHHHHHHHHH--hcC-CCEEEEeccC
Confidence 76 5542 1 2356666666 665 6666655443
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.36 Score=41.35 Aligned_cols=109 Identities=13% Similarity=0.043 Sum_probs=61.8
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
+..+.| +-.++..|-...+...|-|+||| - ..||.+++. .-+|.+.|.- .. .+. ++..
T Consensus 54 ~WP~nP-vd~iI~~l~~~~~~~viaD~GCG-d----A~la~~~~~-~~~V~SfDLv-a~------------n~~--Vtac 111 (219)
T PF05148_consen 54 KWPVNP-VDVIIEWLKKRPKSLVIADFGCG-D----AKLAKAVPN-KHKVHSFDLV-AP------------NPR--VTAC 111 (219)
T ss_dssp TSSS-H-HHHHHHHHCTS-TTS-EEEES-T-T-----HHHHH--S----EEEEESS--S------------STT--EEES
T ss_pred cCCCCc-HHHHHHHHHhcCCCEEEEECCCc-h----HHHHHhccc-CceEEEeecc-CC------------CCC--EEEe
Confidence 445555 45666666555555789999997 3 355666654 4479999998 21 123 3445
Q ss_pred chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|... +|--.+..|+++.--..=..+|.++++.+.+. |++ ||.+.+-.|-++
T Consensus 112 dia~-vPL~~~svDv~VfcLSLMGTn~~~fi~EA~Rv--LK~-~G~L~IAEV~SR 162 (219)
T PF05148_consen 112 DIAN-VPLEDESVDVAVFCLSLMGTNWPDFIREANRV--LKP-GGILKIAEVKSR 162 (219)
T ss_dssp -TTS--S--TT-EEEEEEES---SS-HHHHHHHHHHH--EEE-EEEEEEEEEGGG
T ss_pred cCcc-CcCCCCceeEEEEEhhhhCCCcHHHHHHHHhe--ecc-CcEEEEEEeccc
Confidence 5533 34325789999866554446899999999999 987 777777777764
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=94.05 E-value=1.7 Score=32.29 Aligned_cols=83 Identities=20% Similarity=0.184 Sum_probs=54.9
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEE-EeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVC-ILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCN 121 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~t-IE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~ 121 (220)
+|.-||+|..|..-+.-.....+ +-++++ +|++ ++..+.+.+.+. +. ...|..+.+.. ..+|+|+|-.+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~-~~~v~~v~d~~-~~~~~~~~~~~~-----~~-~~~~~~~ll~~--~~~D~V~I~tp 71 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSP-DFEVVAVCDPD-PERAEAFAEKYG-----IP-VYTDLEELLAD--EDVDAVIIATP 71 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTT-TEEEEEEECSS-HHHHHHHHHHTT-----SE-EESSHHHHHHH--TTESEEEEESS
T ss_pred EEEEECCcHHHHHHHHHHHhcCC-CcEEEEEEeCC-HHHHHHHHHHhc-----cc-chhHHHHHHHh--hcCCEEEEecC
Confidence 57778987444433322222222 556664 7888 877776654432 23 67778887754 57999999999
Q ss_pred CCCccHHHHHHHHHhh
Q 042616 122 IDIDGHKNVFRAAKES 137 (220)
Q Consensus 122 k~~~~y~~~l~~l~~~ 137 (220)
. ....++...+.+.
T Consensus 72 ~--~~h~~~~~~~l~~ 85 (120)
T PF01408_consen 72 P--SSHAEIAKKALEA 85 (120)
T ss_dssp G--GGHHHHHHHHHHT
T ss_pred C--cchHHHHHHHHHc
Confidence 8 8888888888876
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.12 Score=44.67 Aligned_cols=72 Identities=25% Similarity=0.253 Sum_probs=44.6
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCCchhHH--HHHHHHhc--ccCCcEEEEEcchhhhhhhc----C-CCccEEEE
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSGVIGDI--DASKKSLG--RYANCIEFVKGDAQKLLMGD----Y-RGADFVLI 118 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~--~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~----~-~~~D~Vfi 118 (220)
||+|-+|+. ||.++...|++|.-||-| |..- +.++...+ .+.+++++..++-...+... . ..|||||+
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaD-pn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~Vlv 89 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDAD-PNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVLV 89 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCC-CCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEEE
Confidence 458888876 555565458999999999 6653 33222222 34556777665433333221 2 46999999
Q ss_pred cCCC
Q 042616 119 DCNI 122 (220)
Q Consensus 119 D~~k 122 (220)
|..-
T Consensus 90 DleG 93 (231)
T PF07015_consen 90 DLEG 93 (231)
T ss_pred eCCC
Confidence 9864
|
In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA []. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.49 Score=42.66 Aligned_cols=80 Identities=16% Similarity=0.124 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHH---HHHHhcccCCcEEEEEc----chh----hhh
Q 042616 40 NAQLIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDA---SKKSLGRYANCIEFVKG----DAQ----KLL 106 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~---Ar~~l~g~~~~Ve~v~g----da~----~~L 106 (220)
++..|+-+|..|+|=+|+. ||..+.+.+++|.=++.| ..+... .+..... ..+.++.. |+. +.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D-~~r~~a~eql~~~a~~--~~i~~~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD-TFRAAAIEQLQVWGER--VGVPVIAQKEGADPASVAFDAI 189 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC-ccchhhHHHHHHHHHH--cCceEEEeCCCCCHHHHHHHHH
Confidence 4567778898669999886 666666667888777777 644322 2222211 12444432 221 212
Q ss_pred h-hcCCCccEEEEcCCC
Q 042616 107 M-GDYRGADFVLIDCNI 122 (220)
Q Consensus 107 ~-~~~~~~D~VfiD~~k 122 (220)
. .....||+|+||.+-
T Consensus 190 ~~~~~~~~D~ViIDTaG 206 (318)
T PRK10416 190 QAAKARGIDVLIIDTAG 206 (318)
T ss_pred HHHHhCCCCEEEEeCCC
Confidence 1 124689999999987
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=93.97 E-value=1 Score=40.62 Aligned_cols=104 Identities=20% Similarity=0.235 Sum_probs=63.6
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEc--chhhhhhhc-CCC
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKG--DAQKLLMGD-YRG 112 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g--da~~~L~~~-~~~ 112 (220)
...+.+.||-+|+|++|..++.+|+++ +. +|++++.+ +++.+.+++ + |....+..... +..+.+..+ .+.
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~---G~~~vi~~~~~-~~~~~~~~~-l-Ga~~~i~~~~~~~~~~~~v~~~~~~g 256 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAA---GASRIIGIDIN-PDKFELAKK-F-GATDCVNPKDHDKPIQQVLVEMTDGG 256 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCC-HHHHHHHHH-c-CCCEEEcccccchHHHHHHHHHhCCC
Confidence 345678999999988999999999875 45 79999999 888888865 2 32111222211 233333222 247
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+|+|| |+-- . ...+..+... +++.+|.++.-...
T Consensus 257 ~d~vi-d~~g--~--~~~~~~a~~~--l~~~~G~~v~~g~~ 290 (368)
T cd08300 257 VDYTF-ECIG--N--VKVMRAALEA--CHKGWGTSVIIGVA 290 (368)
T ss_pred CcEEE-ECCC--C--hHHHHHHHHh--hccCCCeEEEEccC
Confidence 99876 5543 1 2355666666 65532666654433
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.6 Score=34.76 Aligned_cols=81 Identities=22% Similarity=0.235 Sum_probs=54.7
Q ss_pred EEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh--hhhhc-CCCccEEEEc
Q 042616 44 IVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK--LLMGD-YRGADFVLID 119 (220)
Q Consensus 44 ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~--~L~~~-~~~~D~VfiD 119 (220)
|+-+| .|..+..+++.+.+ .+ +|+-||.| ++..+.++.. .+.++.||+.+ .|.+. ....|.+++.
T Consensus 1 vvI~G---~g~~~~~i~~~L~~-~~~~vvvid~d-~~~~~~~~~~------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIG---YGRIGREIAEQLKE-GGIDVVVIDRD-PERVEELREE------GVEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEEES----SHHHHHHHHHHHH-TTSEEEEEESS-HHHHHHHHHT------TSEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred eEEEc---CCHHHHHHHHHHHh-CCCEEEEEECC-cHHHHHHHhc------ccccccccchhhhHHhhcCccccCEEEEc
Confidence 34456 35677788888887 66 89999999 8888777663 27799999864 45443 3679999998
Q ss_pred CCCCCccH-HHHHHHHHhh
Q 042616 120 CNIDIDGH-KNVFRAAKES 137 (220)
Q Consensus 120 ~~k~~~~y-~~~l~~l~~~ 137 (220)
.+. ... ......++..
T Consensus 70 ~~~--d~~n~~~~~~~r~~ 86 (116)
T PF02254_consen 70 TDD--DEENLLIALLAREL 86 (116)
T ss_dssp SSS--HHHHHHHHHHHHHH
T ss_pred cCC--HHHHHHHHHHHHHH
Confidence 876 332 3344455543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.66 Score=40.82 Aligned_cols=134 Identities=15% Similarity=0.186 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHH---HHHHhcccCCcEEEEEc----chhhh----h
Q 042616 40 NAQLIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDA---SKKSLGRYANCIEFVKG----DAQKL----L 106 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~---Ar~~l~g~~~~Ve~v~g----da~~~----L 106 (220)
+++.|+-+|.+|+|-+|.. ||..+.+.+.+|.-|+.| ..+... .+...+. ..+.++.. |..+. +
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~--~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD-TFRAAAIEQLEEWAKR--LGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC-CCCHHHHHHHHHHHHh--CCeEEEeCCCCCCHHHHHHHHH
Confidence 3566777787669998865 666666656788778877 644332 2222221 12555432 22221 2
Q ss_pred hhc-CCCccEEEEcCCCCCccHHHHH---HHHHhhcCCC------CCCEEEEEecCCCCCCcc---ceEEEeeecCCcEE
Q 042616 107 MGD-YRGADFVLIDCNIDIDGHKNVF---RAAKESVMHG------SGAGVIVGYNALPKGSWR---GYKTHFLPIGEGLL 173 (220)
Q Consensus 107 ~~~-~~~~D~VfiD~~k~~~~y~~~l---~~l~~~~~L~------~~Ggviv~dNv~~~g~~~---~~~s~~lPig~Gl~ 173 (220)
... ...||+|++|.+-+...-...+ +.+.+. +. |.+.++|.+-........ .|...+ ++ +|+.
T Consensus 148 ~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~--~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~-~~-~g~I 223 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRV--IKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAV-GL-TGII 223 (272)
T ss_pred HHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHH--HhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhC-CC-CEEE
Confidence 111 3679999999987222112333 333332 22 556666666442221111 222211 22 6777
Q ss_pred EEEEeec
Q 042616 174 VTRIGEN 180 (220)
Q Consensus 174 v~~~~~~ 180 (220)
++....+
T Consensus 224 lTKlDe~ 230 (272)
T TIGR00064 224 LTKLDGT 230 (272)
T ss_pred EEccCCC
Confidence 7766543
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.46 Score=41.18 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=27.7
Q ss_pred CCCEEEEEcC-CchHHHHHH--HHHHcCCCCcEEEEEeCCchhHH
Q 042616 40 NAQLIVMACS-SIAVSRTLA--LVAAARQTGGRVVCILSGVIGDI 81 (220)
Q Consensus 40 ~a~~ILEIGt-g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~ 81 (220)
+++.|.-.++ |+.|-+|+. ||.++...|.+|.-||.| ...-
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D-~~~~ 145 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN-LRDP 145 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC-CCCc
Confidence 3444544433 457877764 788877767899999998 6543
|
The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF). |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.87 Score=36.51 Aligned_cols=105 Identities=12% Similarity=0.054 Sum_probs=55.0
Q ss_pred EEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEc----chhhhh----h-hcCC
Q 042616 44 IVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKG----DAQKLL----M-GDYR 111 (220)
Q Consensus 44 ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~g----da~~~L----~-~~~~ 111 (220)
++-.|..++|-+|+. ++..+.+.+.+|..|+.| ..+....++... .....+.+... +..+++ . ....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD-TYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC-CCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 344576558888885 454454546788888888 655443332221 11123444332 333222 1 1135
Q ss_pred CccEEEEcCCCCCc---cHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 112 GADFVLIDCNIDID---GHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 112 ~~D~VfiD~~k~~~---~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
.+|+|++|.+.... .....+..+... ..+.+.++|++.
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~--~~~~~~~lVv~~ 122 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRV--VKPDEVLLVVDA 122 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhh--cCCCeEEEEEEC
Confidence 79999999987211 223333444443 345556666664
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.42 Score=43.90 Aligned_cols=74 Identities=11% Similarity=0.140 Sum_probs=49.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.++.+|+-+|+|.+|..++..+.++ +.+|+.+|.+ ++..+.+...+. ..+.....+..+ +......+|+|+.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~l---Ga~V~v~d~~-~~~~~~l~~~~g---~~v~~~~~~~~~-l~~~l~~aDvVI~ 236 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGL---GATVTILDIN-IDRLRQLDAEFG---GRIHTRYSNAYE-IEDAVKRADLLIG 236 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHC---CCeEEEEECC-HHHHHHHHHhcC---ceeEeccCCHHH-HHHHHccCCEEEE
Confidence 3567799999988888888887765 5689999999 887766655443 123222233333 3233457899996
Q ss_pred cC
Q 042616 119 DC 120 (220)
Q Consensus 119 D~ 120 (220)
-.
T Consensus 237 a~ 238 (370)
T TIGR00518 237 AV 238 (370)
T ss_pred cc
Confidence 54
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.87 Score=41.42 Aligned_cols=109 Identities=16% Similarity=0.057 Sum_probs=72.7
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CC
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YR 111 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~ 111 (220)
-|...+...+.-+|.|++|.+.+.-|++.. .+|+++||.| ++..+.|++.=. -+..+ ++ .....+.+.++ .+
T Consensus 187 ~Akv~~GstvAVfGLG~VGLav~~Gaka~G--AsrIIgvDiN-~~Kf~~ak~fGaTe~iNp~-d~-~~~i~evi~EmTdg 261 (375)
T KOG0022|consen 187 TAKVEPGSTVAVFGLGGVGLAVAMGAKAAG--ASRIIGVDIN-PDKFEKAKEFGATEFINPK-DL-KKPIQEVIIEMTDG 261 (375)
T ss_pred hcccCCCCEEEEEecchHHHHHHHhHHhcC--cccEEEEecC-HHHHHHHHhcCcceecChh-hc-cccHHHHHHHHhcC
Confidence 455667788888888889998888888765 4899999999 999999998632 11111 11 22567777665 57
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCC-EEEEEecCCCCC
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGA-GVIVGYNALPKG 156 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~G-gviv~dNv~~~g 156 (220)
.+|+-|=-... .+.++++... .. +| |.-|.-.+..++
T Consensus 262 GvDysfEc~G~-----~~~m~~al~s--~h-~GwG~sv~iGv~~~~ 299 (375)
T KOG0022|consen 262 GVDYSFECIGN-----VSTMRAALES--CH-KGWGKSVVIGVAAAG 299 (375)
T ss_pred CceEEEEecCC-----HHHHHHHHHH--hh-cCCCeEEEEEecCCC
Confidence 89999843333 3455666655 33 35 665555555443
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.3 Score=46.94 Aligned_cols=45 Identities=7% Similarity=0.000 Sum_probs=38.4
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHH
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKK 86 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~ 86 (220)
..++.+++-+|+|.+|..++.++.++ |.+|+.+|.+ +++.+.++.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~l---GA~V~v~d~~-~~rle~a~~ 205 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSL---GAIVRAFDTR-PEVKEQVQS 205 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHH
Confidence 45678999999998999999888875 5689999999 888888886
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >TIGR01968 minD_bact septum site-determining protein MinD | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.4 Score=40.63 Aligned_cols=36 Identities=31% Similarity=0.322 Sum_probs=24.7
Q ss_pred EEEEEcC-CchHHHHHH--HHHHcCCCCcEEEEEeCCchh
Q 042616 43 LIVMACS-SIAVSRTLA--LVAAARQTGGRVVCILSGVIG 79 (220)
Q Consensus 43 ~ILEIGt-g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~ 79 (220)
.|.-.++ ||+|-+|+. ||.++...+-+|.-||.| +.
T Consensus 3 ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D-~~ 41 (261)
T TIGR01968 3 VIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDAD-IG 41 (261)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECC-CC
Confidence 3433333 568888765 676666656789999999 75
|
This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.39 Score=42.71 Aligned_cols=101 Identities=16% Similarity=0.110 Sum_probs=60.7
Q ss_pred CEEEEEcCCchHHH-HHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH--hc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 42 QLIVMACSSIAVSR-TLALVAAARQTGGRVVCILSGVIGDIDASKKS--LG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 42 ~~ILEIGtg~~G~s-Tl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~--l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+|+-+|+|+.|.. +..|+++ +..|+.+... ++.++..++. +. .......+.. .... +...++||+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~----G~~V~lv~r~-~~~~~~i~~~~Gl~i~~~g~~~~~~~-~~~~--~~~~~~~D~v 74 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA----GLPVRLILRD-RQRLAAYQQAGGLTLVEQGQASLYAI-PAET--ADAAEPIHRL 74 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC----CCCeEEEEec-hHHHHHHhhcCCeEEeeCCcceeecc-CCCC--cccccccCEE
Confidence 46888999877754 3335543 5679999998 7667666542 22 1111111111 0100 1113589999
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|+-... -+..+.++.+.+. +.++.-+|..-|-+-
T Consensus 75 iv~vK~--~~~~~al~~l~~~--l~~~t~vv~lQNGv~ 108 (305)
T PRK05708 75 LLACKA--YDAEPAVASLAHR--LAPGAELLLLQNGLG 108 (305)
T ss_pred EEECCH--HhHHHHHHHHHhh--CCCCCEEEEEeCCCC
Confidence 998876 5567888999988 776555566666664
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.057 Score=51.40 Aligned_cols=100 Identities=9% Similarity=-0.069 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcchhhhhhhcCCCccEEE-
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQKLLMGDYRGADFVL- 117 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~~L~~~~~~~D~Vf- 117 (220)
.-+.+||+||| +|.++..|..- +=..+|+-++ ...-...+-.++ |+...+-+. +..-||.-.+.||+|-
T Consensus 117 ~iR~~LDvGcG-~aSF~a~l~~r----~V~t~s~a~~-d~~~~qvqfaleRGvpa~~~~~---~s~rLPfp~~~fDmvHc 187 (506)
T PF03141_consen 117 GIRTALDVGCG-VASFGAYLLER----NVTTMSFAPN-DEHEAQVQFALERGVPAMIGVL---GSQRLPFPSNAFDMVHC 187 (506)
T ss_pred ceEEEEeccce-eehhHHHHhhC----CceEEEcccc-cCCchhhhhhhhcCcchhhhhh---ccccccCCccchhhhhc
Confidence 34677999996 99999988862 3344555554 222222222222 432111111 2333555457899983
Q ss_pred ---EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 118 ---IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 118 ---iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+..+. ..-.-+|-.+.+. |+| ||++|-...-
T Consensus 188 src~i~W~--~~~g~~l~evdRv--LRp-GGyfv~S~pp 221 (506)
T PF03141_consen 188 SRCLIPWH--PNDGFLLFEVDRV--LRP-GGYFVLSGPP 221 (506)
T ss_pred ccccccch--hcccceeehhhhh--hcc-CceEEecCCc
Confidence 22222 1112355566666 776 9998776543
|
; GO: 0008168 methyltransferase activity |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=1.5 Score=38.52 Aligned_cols=102 Identities=11% Similarity=0.013 Sum_probs=59.0
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
...+.++||-.|+|++|..++.+|+++.- ...+++++.+ +++.+.+++. |...-+.....+..+.++.....+| +
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~-~~~~~~~~~~--Ga~~~i~~~~~~~~~~~~~~g~~~d-~ 231 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRI-DERLALAKES--GADWVINNAQEPLGEALEEKGIKPT-L 231 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCC-HHHHHHHHHh--CCcEEecCccccHHHHHhcCCCCCC-E
Confidence 34557789889988899988888886311 2468889999 8888887763 2211122222233344432112244 5
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++|+-- . ...+..+.+. |++ +|.++.-
T Consensus 232 vid~~g--~--~~~~~~~~~~--l~~-~G~~v~~ 258 (339)
T PRK10083 232 IIDAAC--H--PSILEEAVTL--ASP-AARIVLM 258 (339)
T ss_pred EEECCC--C--HHHHHHHHHH--hhc-CCEEEEE
Confidence 667654 2 2345555565 655 5555543
|
|
| >TIGR01969 minD_arch cell division ATPase MinD, archaeal | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.44 Score=40.16 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=22.8
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCCchh
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSGVIG 79 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~ 79 (220)
||+|-||+. ||.++...+-+|.-||.| ++
T Consensus 10 GGvGKTt~a~~LA~~la~~g~~VlliD~D-~~ 40 (251)
T TIGR01969 10 GGTGKTTITANLGVALAKLGKKVLALDAD-IT 40 (251)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCC-CC
Confidence 568888876 777776656789999999 74
|
This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=93.57 E-value=2.4 Score=38.45 Aligned_cols=128 Identities=11% Similarity=0.072 Sum_probs=71.4
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc-
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG- 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g- 100 (220)
+.-.|...+|-..+++..+.+..+-.++| . .++.++.++-..+.+|++.++.=+......+..+....-++.++..
T Consensus 48 r~~~pt~~~le~~la~l~g~~~~~~~~sG-~--~ai~~~~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~ 124 (366)
T PRK08247 48 RTGNPTRGVLEQAIADLEGGDQGFACSSG-M--AAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTA 124 (366)
T ss_pred CCCCchHHHHHHHHHHHhCCCcEEEEcCH-H--HHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCC
Confidence 45678888999999998887766655543 3 3333333333337888887764233333344444322123444432
Q ss_pred chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|..++...+....++||+..+....-....++.+.+. .+..|..||+||++.
T Consensus 125 d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~l--a~~~g~~lIvD~t~~ 176 (366)
T PRK08247 125 SLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKI--AKKHGLLLIVDNTFY 176 (366)
T ss_pred CHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHH--HHHcCCEEEEECCCc
Confidence 4444333333567999986655111112334444443 333589999999974
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=1.6 Score=40.19 Aligned_cols=127 Identities=10% Similarity=0.014 Sum_probs=70.2
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHH-HcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVA-AARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK 99 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~-A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~ 99 (220)
.+...|...+|-..++...+++..+-+++ |.+++.++. .+.+ +.+|++.++.=+.......+.++...-++.++.
T Consensus 49 ~r~~~p~~~~le~~lA~l~g~~~~v~~~s---G~~ai~~~l~~l~~-Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~ 124 (390)
T PRK08064 49 SRSGNPTREALEDIIAELEGGTKGFAFAS---GMAAISTAFLLLSK-GDHVLISEDVYGGTYRMITEVLSRFGIEHTFVD 124 (390)
T ss_pred cCCCChhHHHHHHHHHHHhCCCCeEEECC---HHHHHHHHHHHhCC-CCEEEEccCccchHHHHHHHHHHHcCCEEEEEC
Confidence 35577888999999998877666665665 444444333 4554 788888776412233333333331212344443
Q ss_pred c-chhhhhhhcCCCccEEEEcCCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 100 G-DAQKLLMGDYRGADFVLIDCNIDI-DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 100 g-da~~~L~~~~~~~D~VfiD~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
. |..++...+....++|++..+... .... -++.+.+. .+..|.++|+|++..
T Consensus 125 ~~d~~~l~~~l~~~tklV~l~~p~NptG~~~-dl~~I~~l--a~~~g~~vvvD~a~~ 178 (390)
T PRK08064 125 MTNLEEVAQNIKPNTKLFYVETPSNPLLKVT-DIRGVVKL--AKAIGCLTFVDNTFL 178 (390)
T ss_pred CCCHHHHHHhcCCCceEEEEECCCCCCcEec-cHHHHHHH--HHHcCCEEEEECCCC
Confidence 2 444443333356799998876511 2221 12223222 223489999999864
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.4 Score=35.07 Aligned_cols=29 Identities=31% Similarity=0.150 Sum_probs=21.6
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCCchh
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSGVIG 79 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~ 79 (220)
|++|-+|+. ||..+.+.+.++..+|.| +.
T Consensus 9 gG~Gkst~~~~la~~~~~~~~~vl~~d~d-~~ 39 (104)
T cd02042 9 GGVGKTTTAVNLAAALARRGKRVLLIDLD-PQ 39 (104)
T ss_pred CCcCHHHHHHHHHHHHHhCCCcEEEEeCC-CC
Confidence 458888865 666666557799999999 65
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.84 Score=40.40 Aligned_cols=101 Identities=15% Similarity=0.068 Sum_probs=70.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcc------------------------------
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGR------------------------------ 90 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g------------------------------ 90 (220)
..+||.-||| .|-.+.-+|.. |-.+.+.|.+ --++-...-.+..
T Consensus 57 ~~~VLVPGsG-LGRLa~Eia~~----G~~~~gnE~S-~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~ 130 (270)
T PF07942_consen 57 KIRVLVPGSG-LGRLAWEIAKL----GYAVQGNEFS-YFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVR 130 (270)
T ss_pred ccEEEEcCCC-cchHHHHHhhc----cceEEEEEch-HHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceE
Confidence 5789999996 99988888864 6789999998 7665433332220
Q ss_pred -----------cCCcEEEEEcchhhhhhhc--CCCccEE----EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 91 -----------YANCIEFVKGDAQKLLMGD--YRGADFV----LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 91 -----------~~~~Ve~v~gda~~~L~~~--~~~~D~V----fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
..++..+..||..++-+.- .+.||.| |||... +..+|++.+... |+| ||+-|--.-+
T Consensus 131 iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~---Ni~~Yi~tI~~l--Lkp-gG~WIN~GPL 204 (270)
T PF07942_consen 131 IPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE---NIIEYIETIEHL--LKP-GGYWINFGPL 204 (270)
T ss_pred eCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH---HHHHHHHHHHHH--hcc-CCEEEecCCc
Confidence 0123455666766655432 2589988 799975 889999999998 886 8866654443
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.25 Score=41.99 Aligned_cols=120 Identities=15% Similarity=0.090 Sum_probs=68.8
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhH-H---HHHHH--Hh-cccCCcEEEEEcc
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGD-I---DASKK--SL-GRYANCIEFVKGD 101 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~-~---~~Ar~--~l-~g~~~~Ve~v~gd 101 (220)
+|.|. ++-..+...|+|+.-| -||+|-.|+.++.+ .|+|+++-++ +.. . +..+. .. +....|++.+-++
T Consensus 38 ~E~L~-FaGlkpg~tVid~~PG-gGy~TrI~s~~vgp-~G~Vy~~~p~-e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~ 113 (238)
T COG4798 38 GEVLA-FAGLKPGATVIDLIPG-GGYFTRIFSPAVGP-KGKVYAYVPA-ELTKFAKREGPRLNAAAREPVYANVEVIGKP 113 (238)
T ss_pred cceeE-EeccCCCCEEEEEecC-CccHhhhhchhcCC-ceeEEEecch-hhcccccchhhhhhhhhhhhhhhhhhhhCCc
Confidence 45553 3456677899999986 79999999999988 6799999888 331 1 10111 11 1111344444333
Q ss_pred hhhhhhhcCCCccEEEE--------cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 102 AQKLLMGDYRGADFVLI--------DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 102 a~~~L~~~~~~~D~Vfi--------D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
..... ...+.|+++. -.+.....-..+...+.+. |+|.|-++|.|..-.+|
T Consensus 114 ~~A~~--~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~--LKPGGv~~V~dH~a~pG 172 (238)
T COG4798 114 LVALG--APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKA--LKPGGVYLVEDHRADPG 172 (238)
T ss_pred ccccC--CCCcccccccchhhhhhhccccCcchHHHHHHHHHHh--cCCCcEEEEEeccccCC
Confidence 22211 1123444432 2222213446778888888 88845556777666665
|
|
| >PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.76 Score=40.03 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=29.2
Q ss_pred EEEEEcC-CchHHHHHH--HHHHcCCCCcEEEEEeCCchhHH
Q 042616 43 LIVMACS-SIAVSRTLA--LVAAARQTGGRVVCILSGVIGDI 81 (220)
Q Consensus 43 ~ILEIGt-g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~ 81 (220)
.|.-.|. ||+|.+|+. ||.++...|-+|++||.| |+.+
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d-pqN~ 43 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD-PQNL 43 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC-cHHH
Confidence 3444454 568888774 888898878899999999 8876
|
It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=93.42 E-value=1.4 Score=41.39 Aligned_cols=89 Identities=11% Similarity=0.107 Sum_probs=57.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
...++|+-+|+|.+|...+.+++++ |.+|+.+|.+ +.+.+.|+.. |. +.+ +..+.+ ..+|+||.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~---Ga~ViV~d~d-~~R~~~A~~~--G~----~~~--~~~e~v----~~aDVVI~ 263 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ---GARVIVTEVD-PICALQAAME--GY----EVM--TMEEAV----KEGDIFVT 263 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECC-hhhHHHHHhc--CC----EEc--cHHHHH----cCCCEEEE
Confidence 3578999999988888887777764 6789999999 9888887763 32 111 123333 35798874
Q ss_pred cCCCCCccHHHHHHHH-HhhcCCCCCCEEEEEec
Q 042616 119 DCNIDIDGHKNVFRAA-KESVMHGSGAGVIVGYN 151 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l-~~~~~L~~~Ggviv~dN 151 (220)
+.- ....++.. ... ++ +||+|+.-.
T Consensus 264 -atG----~~~~i~~~~l~~--mk-~GgilvnvG 289 (413)
T cd00401 264 -TTG----NKDIITGEHFEQ--MK-DGAIVCNIG 289 (413)
T ss_pred -CCC----CHHHHHHHHHhc--CC-CCcEEEEeC
Confidence 433 13345543 555 55 488876543
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=93.30 E-value=1.5 Score=36.49 Aligned_cols=97 Identities=19% Similarity=0.165 Sum_probs=56.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhh-hhcCCCccEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLL-MGDYRGADFVL 117 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L-~~~~~~~D~Vf 117 (220)
.+.++||..|++++|..++.++.+. +.+|+.++.+ ++..+.++.. +....+.....+..+.+ .....++|++|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~---g~~v~~~~~~-~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA---GARVIVTDRS-DEKLELAKEL--GADHVIDYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc---CCeEEEEcCC-HHHHHHHHHh--CCceeccCCcCCHHHHHHHhcCCCCCEEE
Confidence 5678999999865677777777764 6799999999 8887777553 11111221122222211 11136799988
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
- +-. . ...++.+.+. +++ +|.++.
T Consensus 207 ~-~~~--~--~~~~~~~~~~--l~~-~G~~v~ 230 (271)
T cd05188 207 D-AVG--G--PETLAQALRL--LRP-GGRIVV 230 (271)
T ss_pred E-CCC--C--HHHHHHHHHh--ccc-CCEEEE
Confidence 4 332 1 1345555665 655 555554
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.51 Score=36.85 Aligned_cols=100 Identities=14% Similarity=0.070 Sum_probs=57.0
Q ss_pred EEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHH-Hhc--ccCCc--EEEEEcchhhhhhhcCCCccEEEE
Q 042616 44 IVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKK-SLG--RYANC--IEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 44 ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~-~l~--g~~~~--Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
|+-+|+|+.|..-.+ .+.+.+-.|+.+... + .++..++ -+. ..... +.....-... +....++|+||+
T Consensus 1 I~I~G~GaiG~~~a~---~L~~~g~~V~l~~r~-~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~viv 73 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAA---RLAQAGHDVTLVSRS-P-RLEAIKEQGLTITGPDGDETVQPPIVISAP--SADAGPYDLVIV 73 (151)
T ss_dssp EEEESTSHHHHHHHH---HHHHTTCEEEEEESH-H-HHHHHHHHCEEEEETTEEEEEEEEEEESSH--GHHHSTESEEEE
T ss_pred CEEECcCHHHHHHHH---HHHHCCCceEEEEcc-c-cHHhhhheeEEEEecccceecccccccCcc--hhccCCCcEEEE
Confidence 566787766654443 232236689999988 6 5554333 222 11111 2111111111 111378999999
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
-..- .+..+.++.+.+. +.++.-+++..|-+-
T Consensus 74 ~vKa--~~~~~~l~~l~~~--~~~~t~iv~~qNG~g 105 (151)
T PF02558_consen 74 AVKA--YQLEQALQSLKPY--LDPNTTIVSLQNGMG 105 (151)
T ss_dssp -SSG--GGHHHHHHHHCTG--EETTEEEEEESSSSS
T ss_pred Eecc--cchHHHHHHHhhc--cCCCcEEEEEeCCCC
Confidence 9876 7778899999998 766435666666553
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=93.26 E-value=1.3 Score=39.19 Aligned_cols=101 Identities=15% Similarity=0.147 Sum_probs=61.4
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
...+.++||-.|+|++|..++.+|++.. ..+|++++.+ +++.+.+++. +...-+.....+..+.+..+ ..++|
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G--~~~v~~~~~~-~~~~~~~~~~--g~~~~v~~~~~~~~~~i~~~~~~~~~d 237 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQLYS--PSKIIMVDLD-DNRLEVAKKL--GATHTVNSAKGDAIEQVLELTDGRGVD 237 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCC-HHHHHHHHHh--CCCceeccccccHHHHHHHHhCCCCCC
Confidence 3455678877888889998888888753 1689999999 7777777653 32222333333332222222 24699
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++| |+-- . ...++.+.+. |++ +|.++.-
T Consensus 238 ~vl-d~~g--~--~~~~~~~~~~--l~~-~g~~v~~ 265 (345)
T cd08286 238 VVI-EAVG--I--PATFELCQEL--VAP-GGHIANV 265 (345)
T ss_pred EEE-ECCC--C--HHHHHHHHHh--ccC-CcEEEEe
Confidence 776 6643 1 2346777676 765 6666543
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.21 E-value=1.4 Score=39.20 Aligned_cols=103 Identities=12% Similarity=0.073 Sum_probs=62.5
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-C-CCc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-Y-RGA 113 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~-~~~ 113 (220)
...+.++||-.|+|++|..++.+|++. +. +|+.++.+ ++..+.+++. |....+.....+..+.+... . ..+
T Consensus 169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~---G~~~v~~~~~~-~~~~~~~~~~--ga~~~i~~~~~~~~~~l~~~~~~~~~ 242 (351)
T cd08233 169 GFKPGDTALVLGAGPIGLLTILALKAA---GASKIIVSEPS-EARRELAEEL--GATIVLDPTEVDVVAEVRKLTGGGGV 242 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCC-HHHHHHHHHh--CCCEEECCCccCHHHHHHHHhCCCCC
Confidence 344568888889888999999899875 44 89999988 8888887653 32111222223333323222 2 359
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|+++ |+-- -...++.+.+. |++ ||.++.-...
T Consensus 243 d~vi-d~~g----~~~~~~~~~~~--l~~-~G~~v~~g~~ 274 (351)
T cd08233 243 DVSF-DCAG----VQATLDTAIDA--LRP-RGTAVNVAIW 274 (351)
T ss_pred CEEE-ECCC----CHHHHHHHHHh--ccC-CCEEEEEccC
Confidence 9886 3322 12345666666 655 6666654443
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.72 Score=43.47 Aligned_cols=107 Identities=15% Similarity=0.105 Sum_probs=60.4
Q ss_pred CCEEEEEcCCchHHHHHH--HHHHcCCC-CcEEEEEeCCchhHHHHHHH---HhcccCCcEEEEE----cchhhhhhhc-
Q 042616 41 AQLIVMACSSIAVSRTLA--LVAAARQT-GGRVVCILSGVIGDIDASKK---SLGRYANCIEFVK----GDAQKLLMGD- 109 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~--LA~A~~~~-~grV~tIE~d~~~~~~~Ar~---~l~g~~~~Ve~v~----gda~~~L~~~- 109 (220)
|..|+-+|..|+|=+|.. ||..+... +.+|.-|+.| ..+.....+ ..+. ..|.++. .|+.++....
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D-~~R~aa~eQL~~~a~~--~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD-VYRPAAIEQLKTLGEQ--IGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc-ccchHHHHHHHHHHhh--cCCeEEecCCCCCHHHHHHHHH
Confidence 567788887669998865 66555554 5567666666 444433222 2221 2244433 2554444211
Q ss_pred ----CCCccEEEEcCCCCCc---cHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 110 ----YRGADFVLIDCNIDID---GHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 110 ----~~~~D~VfiD~~k~~~---~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
...+|+|++|.+-+.. .....+..+... +.|..-++|.|..
T Consensus 177 ~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~--v~p~evllVlda~ 224 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAA--VNPDEILLVVDAM 224 (433)
T ss_pred HHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHh--hCCCeEEEEEecc
Confidence 3579999999987221 223344555555 5676667777754
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=93.18 E-value=1 Score=39.57 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=59.8
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
...+.++||..|+|++|..++.+|++.. ..++++++.+ +++.+.+++. +....+.....+..+.+... ...+|
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g--~~~v~~~~~~-~~~~~~~~~~--g~~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLG--AARIIAVDSN-PERLDLAKEA--GATDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEeCC-HHHHHHHHHh--CCcEEEcCCcchHHHHHHHHcCCCCCc
Confidence 3455678887787778888888888752 1489999888 7777776653 21111222223333333222 25799
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++| |+-. . ...++...+. |++ +|.++.-
T Consensus 239 ~vl-d~~g--~--~~~~~~~~~~--l~~-~G~~v~~ 266 (347)
T cd05278 239 CVI-EAVG--F--EETFEQAVKV--VRP-GGTIANV 266 (347)
T ss_pred EEE-EccC--C--HHHHHHHHHH--hhc-CCEEEEE
Confidence 776 6543 2 1355666666 655 6666644
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=93.18 E-value=1.4 Score=38.80 Aligned_cols=98 Identities=19% Similarity=0.188 Sum_probs=60.4
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
...+.++||-.|+|.+|..++.+|++. +.+|+.++.+ ++..+.+++ + |....+.....+..+.+..+ ..+|++
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~---G~~vi~~~~~-~~~~~~~~~-~-g~~~~i~~~~~~~~~~~~~~-~~~d~v 232 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKM---GFRTVAISRG-SDKADLARK-L-GAHHYIDTSKEDVAEALQEL-GGAKLI 232 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC---CCeEEEEeCC-hHHHHHHHH-c-CCcEEecCCCccHHHHHHhc-CCCCEE
Confidence 345568899889888999998899875 5689999999 888887755 2 22111222222333333332 468988
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+ |+.- ....++.+.+. +++ +|.++.
T Consensus 233 i-~~~g----~~~~~~~~~~~--l~~-~G~~v~ 257 (333)
T cd08296 233 L-ATAP----NAKAISALVGG--LAP-RGKLLI 257 (333)
T ss_pred E-ECCC----chHHHHHHHHH--ccc-CCEEEE
Confidence 7 5531 12355666666 655 555553
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.65 Score=40.60 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-------ccCCcE---EEEEcchhhhhhhc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-------RYANCI---EFVKGDAQKLLMGD 109 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-------g~~~~V---e~v~gda~~~L~~~ 109 (220)
+.++|||+|+| +|.-.+..|... +..++.-|.- ...+.-+.+.. .++..+ .++-|++.+....
T Consensus 86 ~~~~vlELGsG-tglvG~~aa~~~---~~~v~ltD~~--~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~- 158 (248)
T KOG2793|consen 86 KYINVLELGSG-TGLVGILAALLL---GAEVVLTDLP--KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR- 158 (248)
T ss_pred cceeEEEecCC-ccHHHHHHHHHh---cceeccCCch--hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc-
Confidence 57889999986 897766555532 4667665553 33333333321 222233 3444666554322
Q ss_pred CCC-ccEEE-EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 110 YRG-ADFVL-IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 110 ~~~-~D~Vf-iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
... +|+|+ .|+--..+.+......+... +...+.++++.
T Consensus 159 ~~~~~DlilasDvvy~~~~~e~Lv~tla~l--l~~~~~i~l~~ 199 (248)
T KOG2793|consen 159 LPNPFDLILASDVVYEEESFEGLVKTLAFL--LAKDGTIFLAY 199 (248)
T ss_pred cCCcccEEEEeeeeecCCcchhHHHHHHHH--HhcCCeEEEEE
Confidence 334 88887 34433334566666666666 54445444554
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=2 Score=39.76 Aligned_cols=128 Identities=20% Similarity=0.105 Sum_probs=72.1
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+.-.|...+|-..+++..+.+..+-.++| +......+...+.+ +.+|++.+..=..........+....-.+.++..
T Consensus 65 ~r~~~p~~~~le~~lA~l~g~~~al~~~sG-~~Ai~~~l~all~~-Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~ 142 (403)
T PRK07810 65 SRYGNPTVSMFEERLRLIEGAEACFATASG-MSAVFTALGALLGA-GDRLVAARSLFGSCFVVCNEILPRWGVETVFVDG 142 (403)
T ss_pred eCCCCchHHHHHHHHHHHhCCCcEEEECCh-HHHHHHHHHHHhCC-CCEEEEccCCcchHHHHHHHHHHHcCcEEEEECC
Confidence 356778888999999999998888877754 44433333333444 7788876532012233333333311124555533
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC-c---cHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI-D---GHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~-~---~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
|..++...+....++|++..+... . +...+.+.+. ..|.++|+||+...+
T Consensus 143 ~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~------~~g~~vivD~a~a~~ 197 (403)
T PRK07810 143 EDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAH------AAGAKVVLDNVFATP 197 (403)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHH------HcCCEEEEECCCCcc
Confidence 344433333356789998765511 2 2233333333 348999999997543
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.05 E-value=1.7 Score=38.97 Aligned_cols=98 Identities=12% Similarity=0.037 Sum_probs=57.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.+.++++-.|+|++|..++.+|++. +.+++.+..+ ++..+.+.+.+ |. +.+ +...+... +......+|++|
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~---G~~vi~~~~~-~~~~~~~~~~~-Ga-~~~-i~~~~~~~-~~~~~~~~D~vi- 249 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM---GHHVTVISSS-DKKREEALEHL-GA-DDY-LVSSDAAE-MQEAADSLDYII- 249 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC---CCeEEEEeCC-HHHHHHHHHhc-CC-cEE-ecCCChHH-HHHhcCCCcEEE-
Confidence 3567888889888999999999875 5688888888 76665554433 22 211 11112222 222234689776
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+-- ....++.+... +++ ||.++.-..
T Consensus 250 d~~g----~~~~~~~~~~~--l~~-~G~iv~~G~ 276 (357)
T PLN02514 250 DTVP----VFHPLEPYLSL--LKL-DGKLILMGV 276 (357)
T ss_pred ECCC----chHHHHHHHHH--hcc-CCEEEEECC
Confidence 5533 12345556666 665 666665433
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.61 Score=33.60 Aligned_cols=88 Identities=14% Similarity=0.145 Sum_probs=57.1
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCC---cEEEEE-eCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTG---GRVVCI-LSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~---grV~tI-E~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
+|.-||+| -.+..|+..+-..+ .+|+-+ +++ ++..+...+.+. +++...+..+.+. ..|+||+
T Consensus 1 kI~iIG~G---~mg~al~~~l~~~g~~~~~v~~~~~r~-~~~~~~~~~~~~-----~~~~~~~~~~~~~----~advvil 67 (96)
T PF03807_consen 1 KIGIIGAG---NMGSALARGLLASGIKPHEVIIVSSRS-PEKAAELAKEYG-----VQATADDNEEAAQ----EADVVIL 67 (96)
T ss_dssp EEEEESTS---HHHHHHHHHHHHTTS-GGEEEEEEESS-HHHHHHHHHHCT-----TEEESEEHHHHHH----HTSEEEE
T ss_pred CEEEECCC---HHHHHHHHHHHHCCCCceeEEeeccCc-HHHHHHHHHhhc-----cccccCChHHhhc----cCCEEEE
Confidence 35567865 34444555544435 688844 999 888776655542 4555557777763 4799999
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
-.+. ..+.++++.+ +. +. ++.+||.
T Consensus 68 av~p--~~~~~v~~~i-~~--~~-~~~~vis 92 (96)
T PF03807_consen 68 AVKP--QQLPEVLSEI-PH--LL-KGKLVIS 92 (96)
T ss_dssp -S-G--GGHHHHHHHH-HH--HH-TTSEEEE
T ss_pred EECH--HHHHHHHHHH-hh--cc-CCCEEEE
Confidence 9998 8999999999 43 33 4777664
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=93.03 E-value=1.6 Score=39.70 Aligned_cols=126 Identities=17% Similarity=0.115 Sum_probs=67.8
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD 101 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd 101 (220)
+.-.|...+|-.++++.. +..++-+++| +....+.+...+.+ +.+|++.++........++..+....-++.++.-+
T Consensus 47 ry~~p~~~~Le~~lA~l~-~~~~v~~~sG-~~Ai~~~l~all~~-Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~ 123 (366)
T PRK07582 47 RASNPTWRALEAALGELE-GAEALVFPSG-MAAITAVLRALLRP-GDTVVVPADGYYQVRALAREYLAPLGVTVREAPTA 123 (366)
T ss_pred CCCCccHHHHHHHHHHHc-CCCEEEECCH-HHHHHHHHHHhcCC-CCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCC
Confidence 446678888888888888 4556656654 43333333333444 78999987762344445554444221234444322
Q ss_pred hhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.... ......++|++..+....-....++.+.+. .+..|.++|+||+..
T Consensus 124 ~~~~--~~~~~t~lV~le~p~NPtg~v~di~~I~~~--a~~~g~~lvVD~t~~ 172 (366)
T PRK07582 124 GMAE--AALAGADLVLAETPSNPGLDVCDLAALAAA--AHAAGALLVVDNTTA 172 (366)
T ss_pred ChHH--HhccCceEEEEECCCCCCCCccCHHHHHHH--HHHcCCEEEEECCCC
Confidence 1111 113467999997665111111123333333 223489999999863
|
|
| >PRK10818 cell division inhibitor MinD; Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.79 Score=39.50 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=22.7
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCCchh
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSGVIG 79 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~ 79 (220)
||+|-+|+. ||.++.+.+.+|.-||.| +.
T Consensus 12 GGvGKTt~a~nlA~~la~~g~~vllvD~D-~~ 42 (270)
T PRK10818 12 GGVGKTTSSAAIATGLAQKGKKTVVIDFD-IG 42 (270)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEECC-CC
Confidence 668888875 777666657799999999 74
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=92.99 E-value=2.1 Score=38.02 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=62.9
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
...+.++||-.|+|.+|..++.+|++.. ...+++++.+ +++.+.+++. |....+.....+..+.+..+ ...+|
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G--~~~v~~~~~~-~~~~~~~~~~--g~~~~v~~~~~~~~~~i~~~~~~~~~d 237 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRG--AGRIIAVGSR-PNRVELAKEY--GATDIVDYKNGDVVEQILKLTGGKGVD 237 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCC-HHHHHHHHHc--CCceEecCCCCCHHHHHHHHhCCCCCc
Confidence 3455788988898889999999998763 2469999999 8888887763 22111222122222222122 24699
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
++| |+-- . ...+..+.+. |++ +|.++.-++.
T Consensus 238 ~vl-d~~g--~--~~~~~~~~~~--l~~-~G~~v~~g~~ 268 (351)
T cd08285 238 AVI-IAGG--G--QDTFEQALKV--LKP-GGTISNVNYY 268 (351)
T ss_pred EEE-ECCC--C--HHHHHHHHHH--hhc-CCEEEEeccc
Confidence 776 4433 2 2456666776 655 6666655444
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=1.8 Score=39.77 Aligned_cols=123 Identities=18% Similarity=0.202 Sum_probs=70.3
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhH-HHHHHHHhcccCCcEEEEEc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGD-IDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~-~~~Ar~~l~g~~~~Ve~v~g 100 (220)
+.-.|.+.+|=..+++..+++.++-.++| +....+.|...+.+ +.+|++.++. -.. ....+. +....-++.++.-
T Consensus 49 r~~np~~~~lE~~lA~l~g~~~~l~~~sG-~~Ai~~~l~~ll~~-GD~Vlv~~~~-y~~~~~~~~~-~~~~g~~v~~~~~ 124 (385)
T PRK08574 49 REENPTLRPLEEALAKLEGGVDALAFNSG-MAAISTLFFSLLKA-GDRVVLPMEA-YGTTLRLLKS-LEKFGVKVVLAYP 124 (385)
T ss_pred CCCCccHHHHHHHHHHHhCCCcEEEeCCH-HHHHHHHHHHHhCC-CCEEEEcCCC-chhHHHHHHH-hhccCcEEEEECC
Confidence 45677888888888888888878766543 33333334333444 7788776665 332 333332 2311123444444
Q ss_pred chhhhhhhcCC-CccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 DAQKLLMGDYR-GADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 da~~~L~~~~~-~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|..++...+.. +.++|++...... -+..++.+.+.+ .|..||+||+..
T Consensus 125 d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~------~gi~livD~t~a 177 (385)
T PRK08574 125 STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKE------LGAILVVDNTFA 177 (385)
T ss_pred CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHH------cCCEEEEECCCC
Confidence 54444333334 6899999765511 233333344333 489999999974
|
|
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.37 Score=39.51 Aligned_cols=84 Identities=19% Similarity=0.113 Sum_probs=46.7
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccC-CcEEEEE--cchhhhhhhcCCCccEEEEcCCCCC
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDASKKSLGRYA-NCIEFVK--GDAQKLLMGDYRGADFVLIDCNIDI 124 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~-~~Ve~v~--gda~~~L~~~~~~~D~VfiD~~k~~ 124 (220)
||+|-+|+. ||.++...+-+|..||.| ++.-........... +.+.... .+..+.+..+...||+|++|++.
T Consensus 10 GGvGKTT~a~~la~~la~~g~~vlliD~D-~q~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~d~viiD~p~-- 86 (211)
T PHA02518 10 GGAGKTTVATNLASWLHADGHKVLLVDLD-PQGSSTDWAEAREEGEPLIPVVRMGKSIRADLPKVASGYDYVVVDGAP-- 86 (211)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEeCC-CCCChHHHHHhcccCCCCCchhhccHHHHHHHHHHhccCCEEEEeCCC--
Confidence 558888865 667666657899999999 875321111111100 1122221 12233444445789999999987
Q ss_pred ccHHHHHHHHHhh
Q 042616 125 DGHKNVFRAAKES 137 (220)
Q Consensus 125 ~~y~~~l~~l~~~ 137 (220)
. .......+...
T Consensus 87 ~-~~~~~~~~l~~ 98 (211)
T PHA02518 87 Q-DSELARAALRI 98 (211)
T ss_pred C-ccHHHHHHHHH
Confidence 3 33444445444
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=1.2 Score=40.59 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCchHHHHHH-HHHHcCCCCcEEEEEeCCc--------------------hhHHHHHHHHhccc--CCcEE
Q 042616 40 NAQLIVMACSSIAVSRTLA-LVAAARQTGGRVVCILSGV--------------------IGDIDASKKSLGRY--ANCIE 96 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~-LA~A~~~~~grV~tIE~d~--------------------~~~~~~Ar~~l~g~--~~~Ve 96 (220)
+..+|+-||+|+.|...+. |+.+ . -|+++-||.|. ..+++.|++.++.+ .-+|+
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~a-G--vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRA-G--IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-C--CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 4467999999888876664 4443 2 37999999982 12456666666522 23466
Q ss_pred EEEcchh-hhhhhcCCCccEEEEcCCC
Q 042616 97 FVKGDAQ-KLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 97 ~v~gda~-~~L~~~~~~~D~VfiD~~k 122 (220)
.+..+.. +.+..+...+|+|+.-.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~D~ 126 (338)
T PRK12475 100 PVVTDVTVEELEELVKEVDLIIDATDN 126 (338)
T ss_pred EEeccCCHHHHHHHhcCCCEEEEcCCC
Confidence 6666543 2333445679977654443
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=92.85 E-value=4.2 Score=38.28 Aligned_cols=123 Identities=19% Similarity=0.171 Sum_probs=71.4
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchh-HHHHHHHHhcccCCcEEEEEc-
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIG-DIDASKKSLGRYANCIEFVKG- 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~-~~~~Ar~~l~g~~~~Ve~v~g- 100 (220)
.-.|.+.+|=..+++..+++..+-..+| +....+.|...+++ |.+|++.... =. -.......+..+.-.+.++..
T Consensus 58 ~~nPtv~~lE~~la~leg~~~av~~~SG-~aAi~~al~all~~-GD~VI~~~~~-Y~~T~~~~~~~l~~~Gi~v~~vd~~ 134 (432)
T PRK06702 58 IGNPTLAAFEQKLAELEGGVGAVATASG-QAAIMLAVLNICSS-GDHLLCSSTV-YGGTFNLFGVSLRKLGIDVTFFNPN 134 (432)
T ss_pred CCCcHHHHHHHHHHHHhCCCcEEEECCH-HHHHHHHHHHhcCC-CCEEEECCCc-hHHHHHHHHHHHHHCCCEEEEECCC
Confidence 4478999999999998888887765533 44444444434554 8899886654 21 122222223322235666654
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCCc----cHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDID----GHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~~----~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|..++-..+.+.-.+||+..+-... +...+.+.+.+ .|.++|+||++.
T Consensus 135 ~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~------~gi~livD~T~~ 187 (432)
T PRK06702 135 LTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKE------LEVPFIVDNTLA 187 (432)
T ss_pred CCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHH------cCCEEEEECCCC
Confidence 3334322223556899987654222 43444444443 489999999873
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.34 Score=42.68 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=38.5
Q ss_pred CcEEEEEcchhhhhhhc-CCCccEEEEcCCCCC-------------ccH----HHHHHHHHhhcCCCCCCEEEEE
Q 042616 93 NCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDI-------------DGH----KNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 93 ~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~-------------~~y----~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.+.++++||+.+.+..+ .++||+||.|.+-.. .+| .+++..+.+. |++.|.+++.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rv--LK~~G~i~i~ 79 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRV--LKKQGTMYIM 79 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHH--hCCCcEEEEE
Confidence 34689999999988665 368999999987310 112 3577888888 8874444444
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.88 Score=42.39 Aligned_cols=102 Identities=15% Similarity=0.078 Sum_probs=59.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhh-----------cC
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMG-----------DY 110 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~-----------~~ 110 (220)
++|--||. ||..+.||.++.+.|-+|+.+|.+ ++.++..+. + .+.+...+..+.+.. ..
T Consensus 4 ~kI~VIGl---G~~G~~~A~~La~~G~~V~~~D~~-~~~v~~l~~---g---~~~~~e~~l~~~l~~~~~~g~l~~~~~~ 73 (415)
T PRK11064 4 ETISVIGL---GYIGLPTAAAFASRQKQVIGVDIN-QHAVDTINR---G---EIHIVEPDLDMVVKTAVEGGYLRATTTP 73 (415)
T ss_pred cEEEEECc---chhhHHHHHHHHhCCCEEEEEeCC-HHHHHHHHC---C---CCCcCCCCHHHHHHHHhhcCceeeeccc
Confidence 56877885 455555555554446789999999 888775322 1 111112222222110 01
Q ss_pred CCccEEEEcCCCCC--------ccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 111 RGADFVLIDCNIDI--------DGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 111 ~~~D~VfiD~~k~~--------~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
...|+||+--+.+. ......++.+.+. ++ +|.+||......+|
T Consensus 74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~--l~-~g~iVI~~STv~pg 124 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPV--LK-KGDLVILESTSPVG 124 (415)
T ss_pred ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHh--CC-CCCEEEEeCCCCCC
Confidence 35799998776510 1224456777777 65 48888887777777
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.80 E-value=1.3 Score=39.12 Aligned_cols=90 Identities=14% Similarity=0.178 Sum_probs=55.0
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCC--cEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTG--GRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~--grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
++|.-||+|..|.+- +.++...+ -+|+.++++ ++..+.+++. +..+ ....+..+.+ ...|+||+-
T Consensus 7 ~~I~IIG~G~mG~sl---a~~l~~~g~~~~V~~~dr~-~~~~~~a~~~--g~~~---~~~~~~~~~~----~~aDvViia 73 (307)
T PRK07502 7 DRVALIGIGLIGSSL---ARAIRRLGLAGEIVGADRS-AETRARAREL--GLGD---RVTTSAAEAV----KGADLVILC 73 (307)
T ss_pred cEEEEEeeCHHHHHH---HHHHHhcCCCcEEEEEECC-HHHHHHHHhC--CCCc---eecCCHHHHh----cCCCEEEEC
Confidence 578889987555533 33333212 389999999 8777666542 3211 1223333333 468999998
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+. .....+++.+.+. +++ |++| +|
T Consensus 74 vp~--~~~~~v~~~l~~~--l~~-~~iv-~d 98 (307)
T PRK07502 74 VPV--GASGAVAAEIAPH--LKP-GAIV-TD 98 (307)
T ss_pred CCH--HHHHHHHHHHHhh--CCC-CCEE-Ee
Confidence 887 6667778888776 644 6644 44
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.18 Score=39.38 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=26.1
Q ss_pred EEcCCchH--HHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH
Q 042616 46 MACSSIAV--SRTLALVAAARQTGGRVVCILSGVIGDIDASKKS 87 (220)
Q Consensus 46 EIGtg~~G--~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~ 87 (220)
|||+. .| .++++++.+....+++|+++|++ |..++..+++
T Consensus 1 DvGA~-~G~~~~~~~~~~~~~~~~~~v~~~Ep~-p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGAN-IGFWSSTVYFLEKKCGPGGRVHAFEPN-PSNFEKLKRN 42 (167)
T ss_dssp EES-T-TS--HHHHHHHHHHTS--SEEEEE----HHHHHHHHHH
T ss_pred CcccC-CChhHHHHHHHHHHcCCCCEEEEEECC-HHHHHHHhHH
Confidence 78985 89 77776653322237999999999 9999988888
|
; PDB: 2PY6_A. |
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.95 Score=45.14 Aligned_cols=105 Identities=13% Similarity=0.083 Sum_probs=59.1
Q ss_pred CCCCEEEEEcC-CchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHHHHHH-hc---cc------------------CC
Q 042616 39 NNAQLIVMACS-SIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDASKKS-LG---RY------------------AN 93 (220)
Q Consensus 39 ~~a~~ILEIGt-g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~Ar~~-l~---g~------------------~~ 93 (220)
.+++.|.-.++ |+.|-+|+. ||.++...|.+|.-||.| +..-...+.. +. |+ ..
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D-~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~ 622 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDAD-GRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAA 622 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCC-CCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCC
Confidence 34555555544 558887764 777777767899999999 7643322211 00 11 12
Q ss_pred cEEEEEcch--------------hhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 94 CIEFVKGDA--------------QKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 94 ~Ve~v~gda--------------~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++.++.+.. .+.+..+...||+|+||++. .........+... .++.++|+.
T Consensus 623 ~l~~l~~g~~~~~~~~ll~~~~~~~~l~~l~~~yD~IiID~pp--~~~~~d~~~l~~~----~D~vl~v~~ 687 (754)
T TIGR01005 623 SLPMLDSGLFPHGITELLASPAMFSLVIHARLYSDCVVVDVGT--ADPVRDMRAAARL----AIIMLLVTA 687 (754)
T ss_pred CeeEecCCCCCCCHHHHhccHHHHHHHHHHHhhCCEEEEcCCC--cchhHHHHHhhhh----CCeEEEEEE
Confidence 344443321 12233334689999999998 5443444455544 245555543
|
The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.61 E-value=1.1 Score=40.85 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=69.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEE--
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVL-- 117 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vf-- 117 (220)
.+.+|+-||-|.+|+.+.-+|..+ ++.|+-+|.| ..++......+. .+++.+..+...+-.. ....|+++
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl---gA~Vtild~n-~~rl~~ldd~f~---~rv~~~~st~~~iee~-v~~aDlvIga 238 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL---GADVTILDLN-IDRLRQLDDLFG---GRVHTLYSTPSNIEEA-VKKADLVIGA 238 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc---CCeeEEEecC-HHHHhhhhHhhC---ceeEEEEcCHHHHHHH-hhhccEEEEE
Confidence 345677788778899988888765 7899999999 988877766664 4688888887775433 45678764
Q ss_pred --EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 118 --IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 118 --iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
|-+.+ ...=+.+...+. ++| |++||---+-..|
T Consensus 239 VLIpgak---aPkLvt~e~vk~--Mkp-GsVivDVAiDqGG 273 (371)
T COG0686 239 VLIPGAK---APKLVTREMVKQ--MKP-GSVIVDVAIDQGG 273 (371)
T ss_pred EEecCCC---CceehhHHHHHh--cCC-CcEEEEEEEcCCC
Confidence 55554 222345665565 554 8877643333333
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.54 E-value=1 Score=41.95 Aligned_cols=87 Identities=15% Similarity=0.079 Sum_probs=57.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hhhcCCCccEEEEc
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LMGDYRGADFVLID 119 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~~~~~D~VfiD 119 (220)
++||-||+|.+|..+++...+- ..++|+..+.+ ++.++.+.....+ +++.++=|+.+. +..+...+|+|+.=
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~--~d~~V~iAdRs-~~~~~~i~~~~~~---~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN--GDGEVTIADRS-KEKCARIAELIGG---KVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC--CCceEEEEeCC-HHHHHHHHhhccc---cceeEEecccChHHHHHHHhcCCEEEEe
Confidence 5789999998998888765332 13899999999 8888777766432 566666665432 33344567888755
Q ss_pred CCCCCccHHHHHHHHHh
Q 042616 120 CNIDIDGHKNVFRAAKE 136 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~ 136 (220)
++. ......++.+.+
T Consensus 76 ~p~--~~~~~i~ka~i~ 90 (389)
T COG1748 76 APP--FVDLTILKACIK 90 (389)
T ss_pred CCc--hhhHHHHHHHHH
Confidence 554 333445555444
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=92.53 E-value=1.1 Score=35.25 Aligned_cols=89 Identities=20% Similarity=0.138 Sum_probs=48.2
Q ss_pred HHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCC
Q 042616 32 ISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYR 111 (220)
Q Consensus 32 L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~ 111 (220)
-..+++..+..+|+|+|-|..--.+..|.+. |-.|+++|.+ +. .|+ ..+.++.-|..+--..+..
T Consensus 5 a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~----G~dV~~tDi~-~~---~a~-------~g~~~v~DDif~P~l~iY~ 69 (127)
T PF03686_consen 5 AEYIARLNNYGKIVEVGIGFNPEVAKKLKER----GFDVIATDIN-PR---KAP-------EGVNFVVDDIFNPNLEIYE 69 (127)
T ss_dssp HHHHHHHS-SSEEEEET-TT--HHHHHHHHH----S-EEEEE-SS--S--------------STTEE---SSS--HHHHT
T ss_pred HHHHHHhCCCCcEEEECcCCCHHHHHHHHHc----CCcEEEEECc-cc---ccc-------cCcceeeecccCCCHHHhc
Confidence 3344556677899999987544455555553 6789999999 65 111 2355666665542123357
Q ss_pred CccEEE-EcCCCCCccHHHHHHHHHhh
Q 042616 112 GADFVL-IDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 112 ~~D~Vf-iD~~k~~~~y~~~l~~l~~~ 137 (220)
..|+|+ +-++. +.....++.+.+.
T Consensus 70 ~a~lIYSiRPP~--El~~~il~lA~~v 94 (127)
T PF03686_consen 70 GADLIYSIRPPP--ELQPPILELAKKV 94 (127)
T ss_dssp TEEEEEEES--T--TSHHHHHHHHHHH
T ss_pred CCcEEEEeCCCh--HHhHHHHHHHHHh
Confidence 889998 55665 6667777777765
|
; PDB: 2K4M_A. |
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=2.6 Score=38.99 Aligned_cols=128 Identities=14% Similarity=0.093 Sum_probs=72.4
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE-
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK- 99 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~- 99 (220)
.+.-.|...+|-..||+..++..++-.. |++....+.+...+.+ +.+|++.++.=...............-.+.++.
T Consensus 48 ~R~~npt~~~Le~~lA~leg~e~ivvt~-gg~~Ai~~~l~all~~-Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~ 125 (388)
T PRK08861 48 TRSGNPNRGLLEQTLSELESGKGAVVTN-CGTSALNLWVSALLGP-DDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ 125 (388)
T ss_pred cCCCCchHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHHHHcCC-CCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC
Confidence 4567788999999999999999888654 3355554444433444 778887665512123333333321111233332
Q ss_pred cchhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 100 GDAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 100 gda~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
.|..++...+.+..++||+..+... -+..++.+.+. ..|.++|+||++..+
T Consensus 126 ~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~------~~gi~vIvDea~~~~ 180 (388)
T PRK08861 126 SDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAK------AVGALVAVDNTFLTP 180 (388)
T ss_pred CCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHH------HcCCEEEEECCcccc
Confidence 2344433333356799999765411 12233333333 248999999998643
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=92.45 E-value=3.9 Score=37.57 Aligned_cols=131 Identities=13% Similarity=0.008 Sum_probs=70.1
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD 101 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd 101 (220)
+.-.|...+|=..||+..+++.++-..+| +....+.+..-+.+ +.+|++.++.=+.....+...++...-+++++.-+
T Consensus 46 r~gnPt~~~lE~~lA~l~g~~~~~~~~sG-~~Ai~~al~all~~-GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~ 123 (377)
T TIGR01324 46 RRGTLTHFALQDAMCELEGGAGCYLYPSG-LAAVTNSILAFVKA-GDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPL 123 (377)
T ss_pred CCCCccHHHHHHHHHHHhCCCcEEEECcH-HHHHHHHHHHhcCC-CCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCC
Confidence 45568777777788887787777755432 33333333323444 78888776651222333333333221134443221
Q ss_pred hhhhhhh-cCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 102 AQKLLMG-DYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 102 a~~~L~~-~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
..+.+.. +.+...+|++..+....-....++.+.+. .+..|..+|+||+...|
T Consensus 124 ~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~l--a~~~g~~livD~t~a~g 177 (377)
T TIGR01324 124 IGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKA--ARNPGIVIMIDNTWAAG 177 (377)
T ss_pred CHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHH--HHHcCCEEEEECCCccc
Confidence 1122322 23567899988765222223334444443 33358999999998644
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR03453 partition_RepA plasmid partitioning protein RepA | Back alignment and domain information |
|---|
Probab=92.41 E-value=1.5 Score=40.21 Aligned_cols=58 Identities=16% Similarity=0.004 Sum_probs=37.1
Q ss_pred CCCChhHHHHHHHHHhhC--------------CCCEEEEEcC--CchHHHHHH--HHHHcCCCCcEEEEEeCCchhH
Q 042616 22 RGKEPDVGEFISALAAGN--------------NAQLIVMACS--SIAVSRTLA--LVAAARQTGGRVVCILSGVIGD 80 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~--------------~a~~ILEIGt--g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~ 80 (220)
+.-..+....|..+.... ++.+|+-+.. ||+|-+|+. ||.++...|-+|..||.| ++.
T Consensus 70 r~yt~~di~~l~~~~~~~~~~~~~~~~~r~~g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D-pQ~ 145 (387)
T TIGR03453 70 RSYTLEQINELRRHLAQRGREARRYLPHRRGGEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLD-PQA 145 (387)
T ss_pred eeeCHHHHHHHHHHHHhccccccccCCCcCCCCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecC-CCC
Confidence 455566666666555431 1224555533 568888764 776676657799999999 865
|
Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.71 Score=40.26 Aligned_cols=95 Identities=16% Similarity=0.048 Sum_probs=65.9
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCC-CccEEEEcCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYR-GADFVLIDCN 121 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~-~~D~VfiD~~ 121 (220)
+++|+-|| +|-.++.|-.|. --.+.++|.| +.+.+.-+.|+. ....+|..++-+.... .+|+++-..+
T Consensus 2 ~~~dlFsG-~Gg~~~g~~~ag---~~~~~a~e~~-~~a~~~y~~N~~------~~~~~Di~~~~~~~l~~~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSG-IGGFSLGLEQAG---FEVVWAVEID-PDACETYKANFP------EVICGDITEIDPSDLPKDVDLLIGGPP 70 (335)
T ss_dssp EEEEET-T-TTHHHHHHHHTT---EEEEEEEESS-HHHHHHHHHHHT------EEEESHGGGCHHHHHHHT-SEEEEE--
T ss_pred cEEEEccC-ccHHHHHHHhcC---cEEEEEeecC-HHHHHhhhhccc------ccccccccccccccccccceEEEeccC
Confidence 58999986 898999888762 1367999999 888888888873 7888888775433223 5999875433
Q ss_pred C---------------CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 122 I---------------DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 122 k---------------~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
= +...+.++++.+... +| -+++..||-
T Consensus 71 CQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~---~P--k~~~~ENV~ 112 (335)
T PF00145_consen 71 CQGFSIAGKRKGFDDPRNSLFFEFLRIVKEL---KP--KYFLLENVP 112 (335)
T ss_dssp -TTTSTTSTHHCCCCHTTSHHHHHHHHHHHH---S---SEEEEEEEG
T ss_pred CceEeccccccccccccchhhHHHHHHHhhc---cc--eEEEecccc
Confidence 1 124578888888876 45 578889995
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.26 E-value=3.9 Score=37.97 Aligned_cols=147 Identities=12% Similarity=0.033 Sum_probs=77.5
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD 101 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd 101 (220)
+.-.|...+|=..+|...++..++-..+| +......+..-+++ |.+|++.++.=+.....+...+....-.+.++..+
T Consensus 57 r~~npt~~~Le~~iA~le~~~~~~~~~sG-~~Ai~~~l~all~~-GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~ 134 (394)
T PRK09028 57 RRGTPTHFAFQAAIVELEGGAGTALYPSG-AAAISNALLSFLKA-GDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPM 134 (394)
T ss_pred CCCCchHHHHHHHHHHHhCCCcEEEECCH-HHHHHHHHHHHhCC-CCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCC
Confidence 44456556666677776666666644432 33332222223444 88999888762233444444443221234444332
Q ss_pred hhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCccceEEEeeecCCcEEEEEEe
Q 042616 102 AQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWRGYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 102 a~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~~~~~~s~~lPig~Gl~v~~~~ 178 (220)
..+.+... .+...+|++..+....-....++.+.+. .+..|.++++||++..+ ...-|+.-|..+..-.
T Consensus 135 ~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~l--a~~~g~~lvvD~t~a~p------~~~~Pl~~GaDivv~S 204 (394)
T PRK09028 135 IGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRI--AHEHDIVVMLDNTWASP------INSRPFEMGVDISIQA 204 (394)
T ss_pred CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHH--HHHcCCEEEEECCcccc------ccCCccccCceEEEEe
Confidence 22333332 3557899998876221113334555444 33458999999998532 2234555565555544
|
|
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=92.15 E-value=1.7 Score=39.37 Aligned_cols=100 Identities=17% Similarity=0.075 Sum_probs=59.1
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEc---chhhhhhhc--CC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKG---DAQKLLMGD--YR 111 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g---da~~~L~~~--~~ 111 (220)
..+.++||-.|+|++|..++.+|++. +. +|++++.+ +++.+.+++. |....+..... +..+.+..+ ..
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~---G~~~vi~~~~~-~~~~~~~~~~--g~~~~v~~~~~~~~~~~~~v~~~~~g~ 274 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAA---GASKVIAFEIS-EERRNLAKEM--GADYVFNPTKMRDCLSGEKVMEVTKGW 274 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCC-HHHHHHHHHc--CCCEEEcccccccccHHHHHHHhcCCC
Confidence 34567888789888999998898875 45 79999998 7777776663 22111111111 222222222 24
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+|+|+ |+.- .....++.+.+. |++ +|.++.-
T Consensus 275 gvDvvl-d~~g---~~~~~~~~~~~~--l~~-~G~~v~~ 306 (384)
T cd08265 275 GADIQV-EAAG---APPATIPQMEKS--IAI-NGKIVYI 306 (384)
T ss_pred CCCEEE-ECCC---CcHHHHHHHHHH--HHc-CCEEEEE
Confidence 699665 7743 223445666666 654 6666543
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.07 E-value=4.4 Score=37.18 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=70.4
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD 101 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd 101 (220)
+.-.|.+.+|=..+++..+.+..+-+++| +....+.+...+.+ |.+|++.+..=..........+....-.+.++..+
T Consensus 59 r~~~p~~~~le~~lA~l~g~~~av~~~sG-~~Ai~~al~al~~~-Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~ 136 (389)
T PRK05968 59 RGDNPTVRAFEEMLAKLEGAEDARGFASG-MAAISSTVLSFVEP-GDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGR 136 (389)
T ss_pred CCCChhHHHHHHHHHHHhCCCcEEEECCH-HHHHHHHHHHHhCC-CCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCC
Confidence 45678888888889988887776666543 33333233223344 78888877641222222333333111235555443
Q ss_pred -hhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 102 -AQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 102 -a~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
..++. ....+.++|++..+....-....++.+.+. .+..|..+++||+...
T Consensus 137 d~~~l~-~~i~~tklV~ie~pt~~~~~~~dl~~i~~l--a~~~gi~vivD~a~a~ 188 (389)
T PRK05968 137 DEEAVA-KALPGAKLLYLESPTSWVFELQDVAALAAL--AKRHGVVTMIDNSWAS 188 (389)
T ss_pred CHHHHH-HhcccCCEEEEECCCCCCCcHHHHHHHHHH--HHHcCCEEEEECCCcc
Confidence 33333 323457899998665111112334444443 2334889999998743
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=92.06 E-value=3.1 Score=39.12 Aligned_cols=126 Identities=15% Similarity=0.104 Sum_probs=71.2
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE-
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK- 99 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~- 99 (220)
.+...|...+|=..+++..+++..+-.++| ++..++.+...+.+ +.+|++....=..........+....-.+.++.
T Consensus 64 sr~~~p~~~~Le~~lA~l~g~~~av~~sSG-~aAi~~al~all~~-Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vdd 141 (436)
T PRK07812 64 TRIMNPTQDVVEQRIAALEGGVAALLLASG-QAAETFAILNLAGA-GDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVED 141 (436)
T ss_pred cCCCCchHHHHHHHHHHHhCCCeEEEEccH-HHHHHHHHHHHhCC-CCEEEEeCCcchHHHHHHHHHhhcCeEEEEEECC
Confidence 355678888999999998888877767654 55444445444454 788877654301222222333332212344442
Q ss_pred -cchhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 100 -GDAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 100 -gda~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.|.+++...+.....+|++...... .+..++.+.+.+ .|.++|+||+..
T Consensus 142 ~~d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~------~gi~liVD~t~a 195 (436)
T PRK07812 142 PDDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHE------AGVPLIVDNTIA 195 (436)
T ss_pred CCCHHHHHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHHH------cCCEEEEECCCc
Confidence 2344444333345678988766411 233444444443 488999999864
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.92 Score=37.60 Aligned_cols=102 Identities=15% Similarity=0.112 Sum_probs=55.6
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-----cc---------CCcEEEEEcchhhhhhh
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-----RY---------ANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-----g~---------~~~Ve~v~gda~~~L~~ 108 (220)
+|--||.|.+|..+. .++.+.|=+|+++|.| ++.++...+-.- ++ ..+..+ .-|..+.+
T Consensus 2 ~I~ViGlGyvGl~~A---~~lA~~G~~V~g~D~~-~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~ai-- 74 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLA---AALAEKGHQVIGVDID-EEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEEAI-- 74 (185)
T ss_dssp EEEEE--STTHHHHH---HHHHHTTSEEEEE-S--HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHHHH--
T ss_pred EEEEECCCcchHHHH---HHHHhCCCEEEEEeCC-hHHHHHHhhccccccccchhhhhccccccccchh-hhhhhhhh--
Confidence 566778766664433 3333336799999999 888876554221 11 122222 23444433
Q ss_pred cCCCccEEEEcCCCCC--------ccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 109 DYRGADFVLIDCNIDI--------DGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 109 ~~~~~D~VfiD~~k~~--------~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
...|++||--+.+. .......+.+.+. +++ |.+||......+|
T Consensus 75 --~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~--l~~-~~lvV~~STvppG 125 (185)
T PF03721_consen 75 --KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPV--LRP-GDLVVIESTVPPG 125 (185)
T ss_dssp --HH-SEEEE----EBETTTSBETHHHHHHHHHHHHH--HCS-CEEEEESSSSSTT
T ss_pred --hccceEEEecCCCccccCCccHHHHHHHHHHHHHH--Hhh-cceEEEccEEEEe
Confidence 24788887655411 1135667788887 764 9999999999888
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.05 E-value=3 Score=38.52 Aligned_cols=124 Identities=19% Similarity=0.223 Sum_probs=68.6
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhH-HHHHHHHhcccCCcEEEEE-
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGD-IDASKKSLGRYANCIEFVK- 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~-~~~Ar~~l~g~~~~Ve~v~- 99 (220)
+.-.|...+|=..+++..+++..+-.++| ....++.+...+.+ +.+|++.++. -.. ....+..+....-++.++.
T Consensus 60 r~~~p~~~~le~~lA~l~g~~~~i~~ssG-~~Ai~~~l~all~~-GD~Vi~~~~~-y~~~~~~~~~~~~~~Gi~v~~vd~ 136 (398)
T PRK08249 60 RNTNPTVQAFEEKVRILEGAEAATAFSTG-MAAISNTLYTFLKP-GDRVVSIKDT-YGGTNKIFTEFLPRMGVDVTLCET 136 (398)
T ss_pred CCCChHHHHHHHHHHHHhCCCeEEEeCCh-HHHHHHHHHHhcCC-CCEEEEcCCc-hHHHHHHHHHHHhhCCeEEEEcCC
Confidence 56778888998999998888887766643 33333333223444 7788887766 322 2223333331111233332
Q ss_pred cchhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 100 GDAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 100 gda~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.|..++...+....++|++..+... .+...+.+.+. ..|.+||+||+..
T Consensus 137 ~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~------~~gi~livD~t~a 189 (398)
T PRK08249 137 GDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAK------KVGALVVVDNTFA 189 (398)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHH------HcCCEEEEECCcC
Confidence 2344433233345789998765411 22233333333 3489999999975
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.99 E-value=7.6 Score=36.10 Aligned_cols=131 Identities=14% Similarity=0.037 Sum_probs=78.3
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK 99 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~ 99 (220)
..+.-.|....|=..||...++...+-..+| ++..+..+..-+.+ |.+|++.+..=.......++.++...-++.++.
T Consensus 56 YsR~~nPt~~~le~~la~LEg~~~a~~~~SG-maAi~~~~~~ll~~-GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd 133 (395)
T PRK08114 56 YGRRGTLTHFSLQEAMCELEGGAGCALYPCG-AAAVANAILAFVEQ-GDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFD 133 (395)
T ss_pred ccCCCChhHHHHHHHHHHHhCCCeEEEEhHH-HHHHHHHHHHHcCC-CCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEEC
Confidence 3466788888888889998898888877643 33333333323444 888887654313344555555542222455554
Q ss_pred -cchhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 100 -GDAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 100 -gda~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
.|..++-..+.+...+|++...... .+...+-+.+.+.+ +|.++++||++.-+
T Consensus 134 ~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g----~g~~lvVDnT~a~p 191 (395)
T PRK08114 134 PLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVN----PDAVIMIDNTWAAG 191 (395)
T ss_pred CCCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhC----CCCEEEEECCCccc
Confidence 3444433333345789999987622 23445555555541 27899999998643
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.42 Score=40.96 Aligned_cols=52 Identities=15% Similarity=0.170 Sum_probs=37.6
Q ss_pred EEEEEcchhhhhhhc-CCCccEEEEcCCCC------------CccH----HHHHHHHHhhcCCCCCCEEEEE
Q 042616 95 IEFVKGDAQKLLMGD-YRGADFVLIDCNID------------IDGH----KNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 95 Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~------------~~~y----~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+++++||+.+.|+.+ .+++|+||-|++-. ...| ..+++.+.+. |+| ||.+++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RV--LKp-gg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRV--LKK-DALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHH--cCC-CCEEEE
Confidence 478999999999877 47899999997541 0112 3566777888 887 777654
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.55 Score=41.25 Aligned_cols=104 Identities=8% Similarity=0.005 Sum_probs=69.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh--hcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM--GDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~--~~~~~~D~V 116 (220)
.+..+||=+|++ .|++--....-..+ .|-|++||.+ +..=...-.+.+. ..||--+..||..--+ -+..-+|+|
T Consensus 155 kpGsKVLYLGAa-sGttVSHvSDiVGp-eG~VYAVEfs-~rsGRdL~nmAkk-RtNiiPIiEDArhP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 155 KPGSKVLYLGAA-SGTTVSHVSDIVGP-EGCVYAVEFS-HRSGRDLINMAKK-RTNIIPIIEDARHPAKYRMLVGMVDVI 230 (317)
T ss_pred cCCceEEEeecc-CCceeehhhcccCC-CceEEEEEec-ccchHHHHHHhhc-cCCceeeeccCCCchheeeeeeeEEEE
Confidence 566889999985 89888888888777 8999999999 5433222222222 2567778888865221 113679999
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|-|-+. .+-.+++.+=... .|++.|.+++.
T Consensus 231 FaDvaq--pdq~RivaLNA~~-FLk~gGhfvis 260 (317)
T KOG1596|consen 231 FADVAQ--PDQARIVALNAQY-FLKNGGHFVIS 260 (317)
T ss_pred eccCCC--chhhhhhhhhhhh-hhccCCeEEEE
Confidence 999988 6666665544443 26665555554
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.74 Score=40.15 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=52.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh--hhhcCCCccEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL--LMGDYRGADFV 116 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~--L~~~~~~~D~V 116 (220)
.++||-.| + +|+.+..|+..+...+-+|+++..+ +........... +..++++++.+|..+. +......+|.|
T Consensus 4 ~~~ilVtG-a-tGfIG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 80 (322)
T PLN02662 4 GKVVCVTG-A-SGYIASWLVKLLLQRGYTVKATVRD-PNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGV 80 (322)
T ss_pred CCEEEEEC-C-hHHHHHHHHHHHHHCCCEEEEEEcC-CCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEE
Confidence 47899888 3 7999999888887767789888887 554332222221 2235789999987642 22334568999
Q ss_pred EEcCC
Q 042616 117 LIDCN 121 (220)
Q Consensus 117 fiD~~ 121 (220)
|.-+.
T Consensus 81 ih~A~ 85 (322)
T PLN02662 81 FHTAS 85 (322)
T ss_pred EEeCC
Confidence 87664
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.74 E-value=4.6 Score=36.84 Aligned_cols=126 Identities=16% Similarity=0.131 Sum_probs=69.3
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-cc-CCcEEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RY-ANCIEFV 98 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~-~~~Ve~v 98 (220)
.+.-.|...+|-.++++..+++.++-.. |+....++.+ .++++ |.+|++.... - ......+. -. ...+++.
T Consensus 49 ~R~~~p~~~~le~~lA~leg~~~~v~~~-sG~aAi~~~l-~~l~~-GD~VI~~~~~-y---g~~~~~~~~~~~~~~~~~~ 121 (364)
T PRK07269 49 TRTKNPTRAKLEETLAAIESADYALATS-SGMSAIVLAF-SVFPV-GSKVVAVRDL-Y---GGSFRWFNQQEKEGRFHFT 121 (364)
T ss_pred eCCCCccHHHHHHHHHHHhCCCeEEEeC-CHHHHHHHHH-HHhCC-CCEEEEecCC-c---CchHHHHHHHHhcCcEEEE
Confidence 3567888999999999999999888654 3244444444 24444 7888876443 1 11112121 10 0123332
Q ss_pred -EcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 99 -KGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 99 -~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
.-|..++...+.+.-++||+..+....-....++.+.+. .+..|..+|+||++..
T Consensus 122 ~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~l--a~~~gi~vvvD~t~~~ 177 (364)
T PRK07269 122 YANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKL--AHAKGAKVIVDNTFYS 177 (364)
T ss_pred ecCCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHH--HHHcCCEEEEECCCcc
Confidence 235555433333567899988776211111123333332 2234899999999753
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.71 E-value=2.9 Score=38.13 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhH-HHHHHHHhcccCCcEEEEE-cchhhhhhhcCCCccEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGD-IDASKKSLGRYANCIEFVK-GDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~-~~~Ar~~l~g~~~~Ve~v~-gda~~~L~~~~~~~D~Vf 117 (220)
+.+.||-.|+|++|..++.+|++. +.+|+.++.+ ++. .+.+++. |. +. ++. .+...+. .....+|++|
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~---Ga~Vi~~~~~-~~~~~~~a~~l--Ga-~~--~i~~~~~~~v~-~~~~~~D~vi 247 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAF---GLRVTVISRS-SEKEREAIDRL--GA-DS--FLVTTDSQKMK-EAVGTMDFII 247 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHc---CCeEEEEeCC-hHHhHHHHHhC--CC-cE--EEcCcCHHHHH-HhhCCCcEEE
Confidence 568888889988999999999875 5689999887 443 5555432 32 11 111 1212222 2224689776
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+-- . ...++.+.+. +++ ||.++.-..
T Consensus 248 -d~~G--~--~~~~~~~~~~--l~~-~G~iv~vG~ 274 (375)
T PLN02178 248 -DTVS--A--EHALLPLFSL--LKV-SGKLVALGL 274 (375)
T ss_pred -ECCC--c--HHHHHHHHHh--hcC-CCEEEEEcc
Confidence 5533 1 2345666666 655 666665433
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=91.65 E-value=1.9 Score=34.44 Aligned_cols=93 Identities=16% Similarity=0.194 Sum_probs=57.8
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--------ccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--------RYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--------g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
+|.-||+|. .-+++ |..+...+-+|+-..++ ++.++..++.-. .+..++.+ ..|..+.+ ...|
T Consensus 1 KI~ViGaG~-~G~Al--A~~la~~g~~V~l~~~~-~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----~~ad 71 (157)
T PF01210_consen 1 KIAVIGAGN-WGTAL--AALLADNGHEVTLWGRD-EEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----EDAD 71 (157)
T ss_dssp EEEEESSSH-HHHHH--HHHHHHCTEEEEEETSC-HHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----TT-S
T ss_pred CEEEECcCH-HHHHH--HHHHHHcCCEEEEEecc-HHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----Cccc
Confidence 467788763 33333 33333335578888888 777666555332 12234543 56777766 3579
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|++--+. ....++++.+.++ ++ ++..||.
T Consensus 72 ~IiiavPs--~~~~~~~~~l~~~--l~-~~~~ii~ 101 (157)
T PF01210_consen 72 IIIIAVPS--QAHREVLEQLAPY--LK-KGQIIIS 101 (157)
T ss_dssp EEEE-S-G--GGHHHHHHHHTTT--SH-TT-EEEE
T ss_pred EEEecccH--HHHHHHHHHHhhc--cC-CCCEEEE
Confidence 99999988 7889999999998 75 4666664
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=3.7 Score=37.79 Aligned_cols=126 Identities=18% Similarity=0.120 Sum_probs=71.4
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchh-HHHHHHHHhcccCCcEEEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIG-DIDASKKSLGRYANCIEFVK 99 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~-~~~~Ar~~l~g~~~~Ve~v~ 99 (220)
.+.-.|...+|-..||+..++..++-.. |++....+.+...+++ +.+|+..++. -. .............-.+.++.
T Consensus 47 ~R~~~pt~~~L~~~lA~l~g~~~~i~~~-sg~~Ai~~~l~~l~~~-GD~Vl~~~~~-y~~~~~~~~~~~~~~gi~v~~vd 123 (386)
T PRK08045 47 SRRGNPTRDVVQRALAELEGGAGAVLTN-TGMSAIHLVTTVFLKP-GDLLVAPHDC-YGGSYRLFDSLAKRGCYRVLFVD 123 (386)
T ss_pred eCCCCccHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHHHHcCC-CCEEEEcCCC-cHHHHHHHHHHHhhCCeEEEEeC
Confidence 3566788889999999988877666444 3344444444433444 7888888776 33 34444443331111344432
Q ss_pred -cchhhhhhhcCCCccEEEEcCCCCC-c---cHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 100 -GDAQKLLMGDYRGADFVLIDCNIDI-D---GHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 100 -gda~~~L~~~~~~~D~VfiD~~k~~-~---~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
.|..++...+.+..++||+..+... . +..++.+.+. ..|.+||+||++..
T Consensus 124 ~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~------~~g~~vivDeay~~ 178 (386)
T PRK08045 124 QGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAR------EAGAVSVVDNTFLS 178 (386)
T ss_pred CCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHH------HcCCEEEEECCCCc
Confidence 2344433333356799999866511 1 2233333332 24899999999754
|
|
| >PRK13849 putative crown gall tumor protein VirC1; Provisional | Back alignment and domain information |
|---|
Probab=91.62 E-value=1.1 Score=38.33 Aligned_cols=72 Identities=21% Similarity=0.164 Sum_probs=40.6
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHH--HHHHHhc-c-cCCcEEEEEcch----hhhhhhc-CCCccEEEE
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSGVIGDID--ASKKSLG-R-YANCIEFVKGDA----QKLLMGD-YRGADFVLI 118 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~--~Ar~~l~-g-~~~~Ve~v~gda----~~~L~~~-~~~~D~Vfi 118 (220)
||+|-+|+. ||.++...|.+|..||.| |+..- ...+... . ............ .+.+... .+.||+|||
T Consensus 11 GGvGKTT~a~nLA~~la~~G~~VlliD~D-pQ~s~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~yD~iiI 89 (231)
T PRK13849 11 GGAGKTTALMGLCAALASDGKRVALFEAD-ENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQGFDYALA 89 (231)
T ss_pred CCccHHHHHHHHHHHHHhCCCcEEEEeCC-CCCCHHHHHHhhccccCCCccceecCCCHHHHHHHHHHHHhhCCCCEEEE
Confidence 568988875 667776656799999999 87642 2221111 1 111111221111 2222222 257999999
Q ss_pred cCCC
Q 042616 119 DCNI 122 (220)
Q Consensus 119 D~~k 122 (220)
|++.
T Consensus 90 D~pp 93 (231)
T PRK13849 90 DTHG 93 (231)
T ss_pred eCCC
Confidence 9988
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.54 E-value=3.3 Score=37.99 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=69.3
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchh-HHHHHHHHhcccCCcEEEEEc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIG-DIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~-~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
+.-.|...+|-..+++..+.+..+-+.+| +....+.+...+.+ +.+|++.++. -. ........+... .+++...
T Consensus 57 r~~~p~~~~Le~~lA~~~g~~~~i~~~sG-~~Ai~~~l~all~~-Gd~Vl~~~~~-y~~t~~~~~~~~~~~--gi~~~~~ 131 (388)
T PRK07811 57 RTGNPTRTALEEQLAALEGGAYGRAFSSG-MAATDCLLRAVLRP-GDHIVIPNDA-YGGTFRLIDKVFTRW--GVEYTPV 131 (388)
T ss_pred CCCCccHHHHHHHHHHHhCCCceEEeCCH-HHHHHHHHHHHhCC-CCEEEEcCCC-chHHHHHHHHhCcCC--CeEEEEe
Confidence 34557788888889988877766666643 44333333333444 7888887665 22 233333333221 2333332
Q ss_pred ---chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 ---DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 ---da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+....++||+..+... .+..++.+.+.+ .|.+||+||+...
T Consensus 132 d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~------~gi~lIvD~a~a~ 187 (388)
T PRK07811 132 DLSDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHD------AGAKVVVDNTFAS 187 (388)
T ss_pred CCCCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHH------cCCEEEEECCCCc
Confidence 444444333456789998765511 233333333333 4899999998753
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.095 Score=49.68 Aligned_cols=111 Identities=11% Similarity=0.060 Sum_probs=72.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcchhhhhhhc------CC
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQKLLMGD------YR 111 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~~L~~~------~~ 111 (220)
.....|+++|. |.....|-..++ ..++++||.| |++++.|++++. --+++..++..|+.+++.+. ..
T Consensus 296 ~~~~lvvg~gg---G~l~sfl~~~~p--~~~i~~ve~d-P~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~ 369 (482)
T KOG2352|consen 296 GGKQLVVGLGG---GGLPSFLHMSLP--KFQITAVEID-PEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDI 369 (482)
T ss_pred cCcEEEEecCC---CccccceeeecC--ccceeEEEEC-hhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhcccccc
Confidence 33445555553 556666666655 4899999999 999999999997 22346777888888877544 24
Q ss_pred CccEEEEcCCCCC--------ccH--HHHHHHHHhhcCCCCCCEEEEEecCCCCCCc
Q 042616 112 GADFVLIDCNIDI--------DGH--KNVFRAAKESVMHGSGAGVIVGYNALPKGSW 158 (220)
Q Consensus 112 ~~D~VfiD~~k~~--------~~y--~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~~ 158 (220)
.||++++|-+-.. ..+ ...+...+.. | |+-|+++.+-+....++
T Consensus 370 ~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~--l-~p~g~f~inlv~r~~~~ 423 (482)
T KOG2352|consen 370 CPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMI--L-PPRGMFIINLVTRNSSF 423 (482)
T ss_pred CCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhc--c-CccceEEEEEecCCcch
Confidence 6999999976510 122 3344555555 5 45777776555544433
|
|
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=91.51 E-value=4.1 Score=34.85 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=58.8
Q ss_pred hCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 38 GNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 38 ~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
..+.+.||-.|+ |.+|..++.+|++. +.+|+++..+ ++..+.+++ + |. +.+-....+..+.+..+..++|++
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~---g~~v~~~~~~-~~~~~~~~~-~-g~-~~~~~~~~~~~~~i~~~~~~~d~v 212 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKAL---GATVTATTRS-PERAALLKE-L-GA-DEVVIDDGAIAEQLRAAPGGFDKV 212 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHh-c-CC-cEEEecCccHHHHHHHhCCCceEE
Confidence 456788988885 67888888888875 6789999999 777776644 2 33 222111223333232334579988
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+ |+-. . ..++.+.+. |.+ +|.++.
T Consensus 213 l-~~~~--~---~~~~~~~~~--l~~-~g~~v~ 236 (320)
T cd08243 213 L-ELVG--T---ATLKDSLRH--LRP-GGIVCM 236 (320)
T ss_pred E-ECCC--h---HHHHHHHHH--hcc-CCEEEE
Confidence 7 6654 2 345566666 655 555543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=91.50 E-value=2.7 Score=37.99 Aligned_cols=105 Identities=20% Similarity=0.147 Sum_probs=59.8
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc--hhhhhhhc-CC
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGD--AQKLLMGD-YR 111 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd--a~~~L~~~-~~ 111 (220)
+...+.+.||-+|+|++|..++.+|.+. +. +|+.++.+ ++..+.++. + |....+.....+ ..+.+..+ .+
T Consensus 186 ~~~~~g~~VlV~G~g~vG~~~~~~a~~~---G~~~Vi~~~~~-~~~~~~a~~-l-Ga~~~i~~~~~~~~~~~~v~~~~~~ 259 (373)
T cd08299 186 AKVTPGSTCAVFGLGGVGLSAIMGCKAA---GASRIIAVDIN-KDKFAKAKE-L-GATECINPQDYKKPIQEVLTEMTDG 259 (373)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCC-HHHHHHHHH-c-CCceEecccccchhHHHHHHHHhCC
Confidence 3345568888889888888888888875 55 89999999 888888755 3 331122222211 22222221 24
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+|++ +|+-- . ...+...... +++.||.++.-...
T Consensus 260 ~~d~v-ld~~g--~--~~~~~~~~~~--~~~~~G~~v~~g~~ 294 (373)
T cd08299 260 GVDFS-FEVIG--R--LDTMKAALAS--CHEGYGVSVIVGVP 294 (373)
T ss_pred CCeEE-EECCC--C--cHHHHHHHHh--hccCCCEEEEEccC
Confidence 68855 56644 2 2333443332 22346666655443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically |
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=91.44 E-value=3.6 Score=37.76 Aligned_cols=130 Identities=16% Similarity=0.033 Sum_probs=70.5
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+.-.|...+|-..+++..++..++ +++|++....+.+..-+.+ +.+|++.++.=...............-.+.++..
T Consensus 46 ~R~~~p~~~~le~~lA~l~g~~~v~-~~~gg~~Ai~~~l~all~~-GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~ 123 (382)
T TIGR02080 46 SRSGNPTRDLLQQALAELEGGAGAV-VTNTGMSAIHLVTTALLGP-DDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ 123 (382)
T ss_pred cCCCCchHHHHHHHHHHHhCCCcEE-EEcCHHHHHHHHHHHHcCC-CCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECC
Confidence 4556788888888899888888777 4434344444444333444 7788877776122344444433311123444432
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI-DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+....++||+..+... ....+ ++.+.+. .+..|.+||+||+...
T Consensus 124 ~d~~~l~~ai~~~tklV~l~~p~NPtG~~~d-l~~I~~l--a~~~g~~vvvD~a~~~ 177 (382)
T TIGR02080 124 GDEQALRAALAQKPKLVLIETPSNPLLRVVD-IAKICHL--AKAVGAVVVVDNTFLS 177 (382)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCEecC-HHHHHHH--HHHcCCEEEEECCCcc
Confidence 334433333345799998765511 11111 2333332 2234899999999754
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.39 E-value=8.3 Score=35.52 Aligned_cols=128 Identities=18% Similarity=0.141 Sum_probs=70.4
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc-
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG- 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g- 100 (220)
+.-.|...+|-..+++..+.+.++-.++| ++...+.+...+++ +.+|++.++.=+.........++...-++.++..
T Consensus 60 r~~~p~~~~Le~~iA~~~g~~~~l~~~sG-~~Ai~~al~~ll~~-Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~ 137 (400)
T PRK06234 60 RLGNPTSTEVENKLALLEGGEAAVVAASG-MGAISSSLWSALKA-GDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTS 137 (400)
T ss_pred CCCCccHHHHHHHHHHHhCCCcEEEEcCH-HHHHHHHHHHHhCC-CCEEEEecCccchHHHHHHHHHhhCCeEEEEECCC
Confidence 34568888999999998887777766643 44333334333444 7788877654111222222222211123333332
Q ss_pred chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+....++||+..+... .+..++.+.+.++ ++|.++|+||++..
T Consensus 138 d~e~l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~----~~~i~livDea~~~ 192 (400)
T PRK06234 138 NLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHEN----NKECLVFVDNTFCT 192 (400)
T ss_pred CHHHHHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHhc----CCCCEEEEECCCCc
Confidence 444544333345789998765411 2334444444443 23889999999754
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=91.37 E-value=3.9 Score=37.04 Aligned_cols=129 Identities=18% Similarity=0.139 Sum_probs=67.7
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD 101 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd 101 (220)
+.-.|...+|-..++...+.+..+-..+| +....+.+...+.+ +.+|++....=.......+..+....-++.++..+
T Consensus 36 r~~~p~~~~le~~la~l~g~~~a~~~~sG-~~Ai~~~l~~l~~~-gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~ 113 (369)
T cd00614 36 RIGNPTVDALEKKLAALEGGEAALAFSSG-MAAISTVLLALLKA-GDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPD 113 (369)
T ss_pred CCCChhHHHHHHHHHHHHCCCCEEEEcCH-HHHHHHHHHHHcCC-CCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCCC
Confidence 44678888888888888777777666543 33333333333344 77777766541222333333332111234444433
Q ss_pred -hhhhhhhcCCCccEEEEcCCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 102 -AQKLLMGDYRGADFVLIDCNIDI-DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 102 -a~~~L~~~~~~~D~VfiD~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
..++...+.....+|++...... ....+ ++.+.+. .+..|.++++||++..
T Consensus 114 d~~~l~~~i~~~~~~v~~e~~~np~g~~~d-l~~i~~l--a~~~g~~livD~t~~~ 166 (369)
T cd00614 114 DPEALEAAIKPETKLVYVESPTNPTLKVVD-IEAIAEL--AHEHGALLVVDNTFAT 166 (369)
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCCeecC-HHHHHHH--HHHcCCEEEEECCCcc
Confidence 33333222346789998866411 11111 2333332 2234899999999743
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.35 E-value=6.4 Score=35.34 Aligned_cols=103 Identities=15% Similarity=0.120 Sum_probs=63.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHH-HHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDI-DASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~-~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+.+|.-||+|.+|++...+.. .......++-+|.+ ++.+ ..+..... .+..++.+..++..+ + ...|+|
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~-~~~~~~el~L~D~~-~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~-~----~~adiv 77 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALV-NQGIADELVIIDIN-KEKAEGDAMDLSHAVPFTSPTKIYAGDYSD-C----KDADLV 77 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCC-CchhHHHHHHHHhhccccCCeEEEeCCHHH-h----CCCCEE
Confidence 4678999999988987666544 33335689999999 5544 44444433 222456666665444 3 467999
Q ss_pred EEcCCCCCc--------------cHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 117 LIDCNIDID--------------GHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 117 fiD~~k~~~--------------~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
++-+..... -+.++.+.+.+. .|++-+|++-|-
T Consensus 78 Iitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~---~~~~~vivvsNP 124 (315)
T PRK00066 78 VITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMAS---GFDGIFLVASNP 124 (315)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCeEEEEccCc
Confidence 997765111 134556666665 265555666553
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=91.29 E-value=2.3 Score=38.67 Aligned_cols=80 Identities=15% Similarity=0.138 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCch---------------------hHHHHHHHHhcccC--CcEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVI---------------------GDIDASKKSLGRYA--NCIE 96 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~---------------------~~~~~Ar~~l~g~~--~~Ve 96 (220)
+..+|+-+|+|+.|...+....++. -|+++-||.| . .+++.|++.++.+. -+|+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aG--vg~i~lvD~D-~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~ 99 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAG--VGKVTIVDRD-YVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE 99 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCC-ccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence 4466999999988887665333332 4899999998 3 34556666665322 2356
Q ss_pred EEEcchhh-hhhhcCCCccEEEEcCCC
Q 042616 97 FVKGDAQK-LLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 97 ~v~gda~~-~L~~~~~~~D~VfiD~~k 122 (220)
.+..+..+ -+..+...+|+|+.-.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~Dn 126 (339)
T PRK07688 100 AIVQDVTAEELEELVTGVDLIIDATDN 126 (339)
T ss_pred EEeccCCHHHHHHHHcCCCEEEEcCCC
Confidence 66555422 222334679976644343
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.27 E-value=9.5 Score=34.89 Aligned_cols=136 Identities=18% Similarity=0.122 Sum_probs=78.0
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhhCC---CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH
Q 042616 11 KAYLQALKMGKRGKEPDVGEFISALAAGNN---AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKS 87 (220)
Q Consensus 11 ~aY~~~l~~~~~~~~p~~~~~L~~La~~~~---a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~ 87 (220)
.+.-..+....+.-+|..-++..+++...+ +..|+ +|.|+.....+. ..+....+.+|+..++. =.+++.+-+.
T Consensus 42 ~~~~~~~~~~~rYPd~~~~~l~~a~a~~~~~~~~~~V~-~gnGsde~i~~l-~~~~~~~gd~vl~~~Pt-f~~Y~~~a~~ 118 (356)
T COG0079 42 EAIRAALDKLNRYPDPDYRELRAALAEYYGVVDPENVL-VGNGSDELIELL-VRAFVEPGDTVLIPEPT-FSMYEIAAQL 118 (356)
T ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHhCCCCcceEE-EcCChHHHHHHH-HHHhhcCCCEEEEcCCC-hHHHHHHHHh
Confidence 333333444455556666788888877666 24444 677655555444 44444436688888888 5555554444
Q ss_pred hcccCCcEEEEE----cchhhhhhhcCCCccEEEEcCCC-CCccH--HHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 88 LGRYANCIEFVK----GDAQKLLMGDYRGADFVLIDCNI-DIDGH--KNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 88 l~g~~~~Ve~v~----gda~~~L~~~~~~~D~VfiD~~k-~~~~y--~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.. . ..+++-. -|...++....+..|+||+..+. ..+.+ .+.++.+... + +.+++||.|.++.
T Consensus 119 ~g-~-~~~~v~~~~~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~--~-~~~~~vVvDEAY~ 187 (356)
T COG0079 119 AG-A-EVVKVPLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEA--L-PEGGLVVIDEAYI 187 (356)
T ss_pred cC-C-eEEEecccccccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHh--C-CCCcEEEEeCchh
Confidence 32 1 1122222 34344444334568999998554 22333 4455555555 4 4489999999983
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=91.25 E-value=3.4 Score=38.72 Aligned_cols=126 Identities=16% Similarity=0.105 Sum_probs=71.4
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+.-.|...+|-..++...+++..+-.++| +....+.+...+.+ +.+|++.+..=+......+..++...-++.++..
T Consensus 59 ~r~~~p~~~~Le~~lA~leg~~~al~~~sG-~~Ai~~al~~ll~~-GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~ 136 (431)
T PRK08248 59 TRIMNPTTDVFEKRIAALEGGIGALAVSSG-QAAITYSILNIASA-GDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDP 136 (431)
T ss_pred ECCCCchHHHHHHHHHHHhCCCcEEEECCH-HHHHHHHHHHHhCC-CCEEEEccCchhhHHHHHHHHHHhCCEEEEEECC
Confidence 356788889999999998888877766654 44444444333454 7888877654112233333333322123444433
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|..++...+.++.++|++...... .+..++.+.+.+ .|.++|+||++.
T Consensus 137 ~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~------~gi~vIvD~t~a 189 (431)
T PRK08248 137 SDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHE------HGIPLIVDNTFA 189 (431)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHH------cCCEEEEeCCCC
Confidence 334433222356789999754311 133333444433 488999999975
|
|
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.18 E-value=2.8 Score=37.97 Aligned_cols=103 Identities=19% Similarity=0.200 Sum_probs=71.8
Q ss_pred HHHhhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CC
Q 042616 34 ALAAGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YR 111 (220)
Q Consensus 34 ~La~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~ 111 (220)
...+....+.|+--++ |++|...-.||+. .+.||+.|--. +++.+..++.+. ...-|.....|..+.|++. .+
T Consensus 144 ~igqpk~GetvvVSaAaGaVGsvvgQiAKl---kG~rVVGiaGg-~eK~~~l~~~lG-fD~~idyk~~d~~~~L~~a~P~ 218 (340)
T COG2130 144 DIGQPKAGETVVVSAAAGAVGSVVGQIAKL---KGCRVVGIAGG-AEKCDFLTEELG-FDAGIDYKAEDFAQALKEACPK 218 (340)
T ss_pred HhcCCCCCCEEEEEecccccchHHHHHHHh---hCCeEEEecCC-HHHHHHHHHhcC-CceeeecCcccHHHHHHHHCCC
Confidence 3445555677776664 7789888889985 28899999999 999999888765 2234677777888888765 46
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.+|+.|=.-.. ++++.+.++ |...+-+++|
T Consensus 219 GIDvyfeNVGg------~v~DAv~~~--ln~~aRi~~C 248 (340)
T COG2130 219 GIDVYFENVGG------EVLDAVLPL--LNLFARIPVC 248 (340)
T ss_pred CeEEEEEcCCc------hHHHHHHHh--hccccceeee
Confidence 79998855554 455666655 5543333443
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.18 E-value=4.5 Score=37.90 Aligned_cols=129 Identities=17% Similarity=0.115 Sum_probs=76.9
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD 101 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd 101 (220)
+.-.|..-.+=..+++..+++.++-..+| ...++..|..-++ .++++++.+.-=..-..+.++....+.-.+.++..+
T Consensus 73 r~~nPt~~~le~~iaal~ga~~~l~fsSG-maA~~~al~~L~~-~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~ 150 (409)
T KOG0053|consen 73 RSGNPTRDVLESGIAALEGAAHALLFSSG-MAAITVALLHLLP-AGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVD 150 (409)
T ss_pred cCCCCchHHHHHHHHHHhCCceEEEeccc-HHHHHHHHHHhcC-CCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechh
Confidence 34466777777888899999988876654 5555555554444 489999986431333444444444222235666644
Q ss_pred hhhhhhhc-CCCccEEEEcCCCCCccH-HHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 102 AQKLLMGD-YRGADFVLIDCNIDIDGH-KNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 102 a~~~L~~~-~~~~D~VfiD~~k~~~~y-~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
-.+-+... .+..++||+-.+. ++.+ ...++.+.+. ....|.+||+||.+-.
T Consensus 151 ~~~~~~~~i~~~t~~V~~ESPs-NPll~v~DI~~l~~l--a~~~g~~vvVDnTf~~ 203 (409)
T KOG0053|consen 151 DLKKILKAIKENTKAVFLESPS-NPLLKVPDIEKLARL--AHKYGFLVVVDNTFGS 203 (409)
T ss_pred hHHHHHHhhccCceEEEEECCC-CCccccccHHHHHHH--HhhCCCEEEEeCCcCc
Confidence 43333333 3459999999887 2211 1223333333 2235999999999864
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=91.16 E-value=4.5 Score=37.23 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=70.0
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchh-HHHHHHHHhcccCCcEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIG-DIDASKKSLGRYANCIEF 97 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~-~~~~Ar~~l~g~~~~Ve~ 97 (220)
.+.-.|...+|=..+|+..+.+..+-.++ |..++. +...+.+ +.+|++.++. .. .....+..+....-.+.+
T Consensus 54 ~r~~~p~~~~le~~lA~l~g~~~av~~~s---G~~Ai~~~l~al~~~-Gd~Vi~~~~~-y~~t~~~~~~~~~~~G~~~~~ 128 (391)
T TIGR01328 54 SRLGNPTVSNLEGRIAFLEGTEAAVATSS---GMGAIAATLLTILKA-GDHLISDECL-YGCTFALLEHALTKFGIQVDF 128 (391)
T ss_pred eCCCCchHHHHHHHHHHHhCCCcEEEECC---HHHHHHHHHHHHhCC-CCEEEEecCc-chHHHHHHHHHHhcCCeEEEE
Confidence 35677888899999999888887776654 444443 3223344 7788886654 22 222333333222123444
Q ss_pred EEc-chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 98 VKG-DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 98 v~g-da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
+.. |..++...+..+.++|++..+... .+..++.+.+. ..|..+++||+...
T Consensus 129 vd~~d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~------~~gi~livD~a~a~ 185 (391)
T TIGR01328 129 INMAIPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAH------SQGVKVIVDNTFAT 185 (391)
T ss_pred ECCCCHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHH------HcCCEEEEECCCch
Confidence 433 344444333456789998766411 13333344333 34889999999753
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=91.08 E-value=4.1 Score=36.17 Aligned_cols=98 Identities=16% Similarity=0.127 Sum_probs=57.2
Q ss_pred EEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---ccCCcEEEEE-cchhhhhhhcCCCccEEEEcC
Q 042616 45 VMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---RYANCIEFVK-GDAQKLLMGDYRGADFVLIDC 120 (220)
Q Consensus 45 LEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---g~~~~Ve~v~-gda~~~L~~~~~~~D~VfiD~ 120 (220)
.-||+|.+|++..++... ......++.+|++ ++.++.-..-+. .....+.+.. +|. +-+ ...|+||+-+
T Consensus 2 ~iiGaG~VG~~~a~~l~~-~~~~~el~l~D~~-~~~~~g~~~DL~~~~~~~~~~~i~~~~~~-~~l----~~aDiVIita 74 (300)
T cd00300 2 TIIGAGNVGAAVAFALIA-KGLASELVLVDVN-EEKAKGDALDLSHASAFLATGTIVRGGDY-ADA----ADADIVVITA 74 (300)
T ss_pred EEECCCHHHHHHHHHHHh-cCCCCEEEEEeCC-ccHHHHHHHhHHHhccccCCCeEEECCCH-HHh----CCCCEEEEcC
Confidence 347888889877764443 2224789999999 665543333333 1112345543 443 323 4679999987
Q ss_pred CCCCc--------------cHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 121 NIDID--------------GHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 121 ~k~~~--------------~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
..... -+.++.+.+.+. .|++-+|++-|-
T Consensus 75 g~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~---~p~~~viv~sNP 117 (300)
T cd00300 75 GAPRKPGETRLDLINRNAPILRSVITNLKKY---GPDAIILVVSNP 117 (300)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCeEEEEccCh
Confidence 75211 145566677776 265666666653
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=91.07 E-value=3.4 Score=37.86 Aligned_cols=126 Identities=10% Similarity=0.003 Sum_probs=70.3
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+.-.|.+.+|=..+++..+++..+-+++| +....+.++ .+.+ +.+|++.++.=+.........+....-.+.++..
T Consensus 45 ~r~~~p~~~~Le~~la~l~g~~~al~~~SG-~~Al~~~l~-~l~p-Gd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~ 121 (380)
T PRK06176 45 SRSGNPTRFALEELIADLEGGVKGFAFASG-LAGIHAVFS-LFQS-GDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT 121 (380)
T ss_pred cCCCChhHHHHHHHHHHHhCCCCEEEECCH-HHHHHHHHH-HcCC-CCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCC
Confidence 356778888888889888877777767654 443333333 3444 8899887654122333333333321112333322
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+.....+||+..+... .+..++.+.+.+ .|.+||+||+...
T Consensus 122 ~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~------~gi~vivD~t~a~ 175 (380)
T PRK06176 122 SDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKD------HGLLTIVDNTFAT 175 (380)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHH------cCCEEEEECCccc
Confidence 333433222356789998655411 133334444333 4899999999753
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=90.96 E-value=1.3 Score=39.64 Aligned_cols=94 Identities=16% Similarity=0.056 Sum_probs=63.3
Q ss_pred EEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 44 IVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 44 ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
|+|+-|| +|-.++.|-.| |-+ +.++|.| +...+.-+.|+.+ +++++|..++-+.....+|+++-..+=
T Consensus 1 vidLF~G-~GG~~~Gl~~a----G~~~~~a~e~~-~~a~~ty~~N~~~-----~~~~~Di~~~~~~~~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAG-IGGIRLGFEQA----GFKCVFASEID-KYAQKTYEANFGN-----KVPFGDITKISPSDIPDFDILLGGFPC 69 (315)
T ss_pred CEEEecC-ccHHHHHHHHc----CCeEEEEEeCC-HHHHHHHHHhCCC-----CCCccChhhhhhhhCCCcCEEEecCCC
Confidence 5788886 78888888765 444 5679999 8888888887642 445678777654323467888643221
Q ss_pred ---------------CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 123 ---------------DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 123 ---------------~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
++..+.++++.+... +| -++|..||-
T Consensus 70 q~fS~ag~~~~~~d~r~~L~~~~~r~i~~~---~P--~~~v~ENV~ 110 (315)
T TIGR00675 70 QPFSIAGKRKGFEDTRGTLFFEIVRILKEK---KP--KFFLLENVK 110 (315)
T ss_pred cccchhcccCCCCCchhhHHHHHHHHHhhc---CC--CEEEeeccH
Confidence 112456777777764 45 589999995
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.89 E-value=6.2 Score=36.47 Aligned_cols=128 Identities=10% Similarity=0.034 Sum_probs=70.1
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE-c
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK-G 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~-g 100 (220)
+.-.|.+.+|=..++...+++..+-..+| .......|...+.+ |.+|++.+..-+....... .+....-.+.++. .
T Consensus 43 r~g~p~~~~lE~~la~leg~~~~v~~ssG-~~Ai~~~l~all~~-Gd~Vv~~~~~y~~t~~~~~-~l~~~G~~v~~v~~~ 119 (397)
T PRK05939 43 RQGTPTTAALEAKITKMEGGVGTVCFATG-MAAIAAVFLTLLRA-GDHLVSSQFLFGNTNSLFG-TLRGLGVEVTMVDAT 119 (397)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEeCCH-HHHHHHHHHHHcCC-CCEEEECCCccccHHHHHH-HHHhcCCEEEEECCC
Confidence 45668888888889998888877766643 33333333323444 7888887664112222221 2221112344443 2
Q ss_pred chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|.+++...+.+...+|++.......-....++.+.+. .+..|.++++||+..
T Consensus 120 d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~l--a~~~gi~livD~t~a 171 (397)
T PRK05939 120 DVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGAL--CRERGLLYVVDNTMT 171 (397)
T ss_pred CHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHH--HHHcCCEEEEECCcc
Confidence 4444433334567899998754111112233444443 233589999999874
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.82 E-value=2.7 Score=37.29 Aligned_cols=102 Identities=16% Similarity=0.092 Sum_probs=54.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH-hc--ccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKS-LG--RYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~-l~--g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
..+|+-+|+|+.|.+-.+.. .+.+-.|+-+..+ +. +..+++ +. .......+..-.+.... ....++|+||
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L---~~~g~~V~~~~r~-~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi 77 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAML---ARAGFDVHFLLRS-DY--EAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVL 77 (313)
T ss_pred CcEEEEECCCHHHHHHHHHH---HHCCCeEEEEEeC-CH--HHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEE
Confidence 35799999887765433322 2225678888887 52 222221 11 11111111100011111 1135799999
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+-... .+..+.++.+.+. +.+++-++..-|-+
T Consensus 78 lavK~--~~~~~~~~~l~~~--~~~~~~iv~lqNG~ 109 (313)
T PRK06249 78 VGLKT--TANALLAPLIPQV--AAPDAKVLLLQNGL 109 (313)
T ss_pred EEecC--CChHhHHHHHhhh--cCCCCEEEEecCCC
Confidence 98876 6667788888887 76644445555544
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.76 E-value=4.6 Score=35.65 Aligned_cols=47 Identities=17% Similarity=0.078 Sum_probs=36.4
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHH
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKK 86 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~ 86 (220)
+...+.++||-.|+|++|..++.+|++. +.+ |+.+..+ ++..+.+++
T Consensus 158 ~~~~~g~~vlI~g~g~vG~~a~~lak~~---G~~~v~~~~~~-~~~~~~~~~ 205 (343)
T cd05285 158 AGVRPGDTVLVFGAGPIGLLTAAVAKAF---GATKVVVTDID-PSRLEFAKE 205 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc---CCcEEEEECCC-HHHHHHHHH
Confidence 3445678888788887899999999875 455 8999988 777777765
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=90.75 E-value=7.1 Score=34.79 Aligned_cols=99 Identities=15% Similarity=0.157 Sum_probs=57.8
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHH-HHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDID-ASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~-~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+|.-||+|.+|.+...++.. ......|+-+|.+ ++.++ .|..... .+.....+..+|..+ + ...|+||+-
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-~g~~~ev~l~D~~-~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~-l----~~aDiViit 74 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-RGLASEIVLVDIN-KAKAEGEAMDLAHGTPFVKPVRIYAGDYAD-C----KGADVVVIT 74 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCCCEEEEEECC-chhhhhHHHHHHccccccCCeEEeeCCHHH-h----CCCCEEEEc
Confidence 47789988777765554332 2113589999999 76654 3333332 222334555555433 2 467999998
Q ss_pred CCCCC--------------ccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 120 CNIDI--------------DGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 120 ~~k~~--------------~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+.... ..+.++.+.+.+. .|+|-++++-|
T Consensus 75 a~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~---~~~giiiv~tN 117 (308)
T cd05292 75 AGANQKPGETRLDLLKRNVAIFKEIIPQILKY---APDAILLVVTN 117 (308)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCeEEEEecC
Confidence 77521 1145666677776 36555666645
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=90.75 E-value=6.1 Score=33.22 Aligned_cols=84 Identities=12% Similarity=0.088 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
..++||-+|.|.+|+.-+ ..+-+.+++|+-|+++ .. +..++..+ ..+|+++.++.... ....+|+||+-
T Consensus 8 ~gk~vlVvGgG~va~rk~---~~Ll~~ga~VtVvsp~-~~--~~l~~l~~--~~~i~~~~~~~~~~---dl~~~~lVi~a 76 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKA---RLLLKAGAQLRVIAEE-LE--SELTLLAE--QGGITWLARCFDAD---ILEGAFLVIAA 76 (205)
T ss_pred CCCeEEEECcCHHHHHHH---HHHHHCCCEEEEEcCC-CC--HHHHHHHH--cCCEEEEeCCCCHH---HhCCcEEEEEC
Confidence 457899999654444433 3333447899988887 43 11122111 13789988886532 23579999987
Q ss_pred CCCCCc-cHHHHHHHHHh
Q 042616 120 CNIDID-GHKNVFRAAKE 136 (220)
Q Consensus 120 ~~k~~~-~y~~~l~~l~~ 136 (220)
.+- . .-..+...+..
T Consensus 77 t~d--~~ln~~i~~~a~~ 92 (205)
T TIGR01470 77 TDD--EELNRRVAHAARA 92 (205)
T ss_pred CCC--HHHHHHHHHHHHH
Confidence 665 3 22445555544
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=6.7 Score=36.13 Aligned_cols=132 Identities=10% Similarity=-0.001 Sum_probs=72.9
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+.-.|.+.+|-..+++..+++.++-..+ ++....+.+...+++ |.+|++.++.=....+.....+..+.-++.++..
T Consensus 60 ~r~~~pt~~~Le~~lA~l~g~~~~l~~~s-gt~Ai~~~l~al~~~-GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~ 137 (394)
T PRK07050 60 GLHATPTSLALAQRLAEIEGGRHALLQPS-GLAAISLVYFGLVKA-GDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDP 137 (394)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEecc-HHHHHHHHHHHHhCC-CCEEEEecCCcccHHHHHHHHHHhcCeEEEEECC
Confidence 45677888999999999989888875543 244444444333454 8899888876222232233333311123444432
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
+..++-..+.....+|++..+....-....++.+.+. .+..|..|++||++..+
T Consensus 138 ~~~~~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~i--a~~~gi~livD~a~a~~ 192 (394)
T PRK07050 138 LIGAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAA--ARARGVVTAIDNTYSAG 192 (394)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHH--HHHcCCEEEEECCcccc
Confidence 2222222223456899987655111223334444443 22348899999997543
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=90.70 E-value=5.9 Score=34.72 Aligned_cols=100 Identities=16% Similarity=0.120 Sum_probs=59.6
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCc
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGA 113 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~ 113 (220)
+...+.+.||..|+|++|..++.||.+. +.+|+++..+ ++..+.+++. +....+.....+..+.+... ..++
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~---g~~v~~~~~s-~~~~~~~~~~--g~~~v~~~~~~~~~~~l~~~~~~~~v 228 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKAR---GARVIVVDID-DERLEFAREL--GADDTINVGDEDVAARLRELTDGEGA 228 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc---CCeEEEECCC-HHHHHHHHHh--CCCEEecCcccCHHHHHHHHhCCCCC
Confidence 3445678899889877899999999875 6789999888 8877777542 22112233333333333222 2468
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|++|--... ...+..+.+. |++ +|.++.
T Consensus 229 d~vld~~g~-----~~~~~~~~~~--l~~-~G~~i~ 256 (337)
T cd08261 229 DVVIDATGN-----PASMEEAVEL--VAH-GGRVVL 256 (337)
T ss_pred CEEEECCCC-----HHHHHHHHHH--Hhc-CCEEEE
Confidence 988643222 2334555555 555 444443
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase | Back alignment and domain information |
|---|
Probab=90.67 E-value=3.7 Score=34.09 Aligned_cols=40 Identities=20% Similarity=0.101 Sum_probs=26.7
Q ss_pred CCEEEEEcC-CchHHHHHH--HHHHcCC-CCcEEEEEeCCchhHH
Q 042616 41 AQLIVMACS-SIAVSRTLA--LVAAARQ-TGGRVVCILSGVIGDI 81 (220)
Q Consensus 41 a~~ILEIGt-g~~G~sTl~--LA~A~~~-~~grV~tIE~d~~~~~ 81 (220)
.+.|.-.++ |++|-||+. ||.++.. .+.+|.-||.| +..-
T Consensus 35 ~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D-~~~~ 78 (207)
T TIGR03018 35 NNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDAD-LRRP 78 (207)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECC-CCCh
Confidence 344444432 568888865 6666543 37799999999 7653
|
Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins. |
| >cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=90.65 E-value=4.5 Score=34.93 Aligned_cols=97 Identities=19% Similarity=0.216 Sum_probs=58.4
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE-cchhhhhhhc--CCCc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK-GDAQKLLMGD--YRGA 113 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~-gda~~~L~~~--~~~~ 113 (220)
...+.+.++-.|+|++|..++.+|.+. +.+|++++.+ ++..+.+++ + +....+.... .+..+.+... ...+
T Consensus 157 ~~~~g~~vli~g~g~~g~~~~~~a~~~---G~~v~~~~~~-~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (336)
T cd08276 157 PLKPGDTVLVQGTGGVSLFALQFAKAA---GARVIATSSS-DEKLERAKA-L-GADHVINYRTTPDWGEEVLKLTGGRGV 230 (336)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHH-c-CCCEEEcCCcccCHHHHHHHHcCCCCC
Confidence 445567777678777888888888875 6789999999 887777766 2 3211122222 2333333332 2469
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
|+++ |+.. . ..++.+.+. |.+ +|.++
T Consensus 231 d~~i-~~~~--~---~~~~~~~~~--l~~-~G~~v 256 (336)
T cd08276 231 DHVV-EVGG--P---GTLAQSIKA--VAP-GGVIS 256 (336)
T ss_pred cEEE-ECCC--h---HHHHHHHHh--hcC-CCEEE
Confidence 9888 5433 2 345566666 665 44444
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=90.63 E-value=7.9 Score=34.34 Aligned_cols=99 Identities=17% Similarity=0.139 Sum_probs=59.5
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-c---cCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-R---YANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g---~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
+|.-||+|.+|.+....+.. ......|+-+|.+ ++.++....-+. . ....+.+..++..+ + ...|+|++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-~g~~~ei~l~D~~-~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l----~~aDIVIi 74 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-QGIADELVLIDIN-EEKAEGEALDLEDALAFLPSPVKIKAGDYSD-C----KDADIVVI 74 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCC-cchhhHhHhhHHHHhhccCCCeEEEcCCHHH-h----CCCCEEEE
Confidence 67889998788766654432 2212589999999 666544333332 1 12345555555443 3 46899999
Q ss_pred cCCCCC--------------ccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 119 DCNIDI--------------DGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 119 D~~k~~--------------~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
-+...+ .-+.++.+.+.+. .|++=+|++-|
T Consensus 75 tag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~---~~~~~vivvsN 118 (306)
T cd05291 75 TAGAPQKPGETRLDLLEKNAKIMKSIVPKIKAS---GFDGIFLVASN 118 (306)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCeEEEEecC
Confidence 776521 1146666777776 36565666655
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=90.62 E-value=2.9 Score=34.95 Aligned_cols=81 Identities=14% Similarity=0.061 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCch------------------hHHHHHHHHhcccC--CcEEEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVI------------------GDIDASKKSLGRYA--NCIEFVK 99 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~------------------~~~~~Ar~~l~g~~--~~Ve~v~ 99 (220)
+..+|+-+|+|+.|...+.....+. -++++-+|.|.- .+++.+.+.++.+. -+++.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~G--v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 97 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAG--VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK 97 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcC--CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence 4567999999888887665333322 389999998832 23344455554222 2344444
Q ss_pred cchh-hhhhhcCCCccEEEEcCCC
Q 042616 100 GDAQ-KLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 100 gda~-~~L~~~~~~~D~VfiD~~k 122 (220)
.... +.++.....+|+||.-.+.
T Consensus 98 ~~i~~~~~~~~~~~~D~Vi~~~d~ 121 (202)
T TIGR02356 98 ERVTAENLELLINNVDLVLDCTDN 121 (202)
T ss_pred hcCCHHHHHHHHhCCCEEEECCCC
Confidence 4332 2233334689987644333
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.52 E-value=3.8 Score=36.12 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=80.4
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA 102 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda 102 (220)
.+......+|.+.-..++... |...+| |.+..+..++. ..|+...|.. |+-+..-+++|.+- .++.+..+|.
T Consensus 72 ~lpa~l~~yl~~i~~lN~~~~-l~~YpG----SP~lA~~llR~-qDRl~l~ELH-p~D~~~L~~~f~~d-~~vrv~~~DG 143 (279)
T COG2961 72 DLPAELEPYLDAVRQLNPGGG-LRYYPG----SPLLARQLLRE-QDRLVLTELH-PSDAPLLRNNFAGD-RRVRVLRGDG 143 (279)
T ss_pred CchHHHHHHHHHHHHhCCCCC-cccCCC----CHHHHHHHcch-hceeeeeecC-ccHHHHHHHHhCCC-cceEEEecCc
Confidence 344455566666655555443 666665 23333333343 7899999999 99999999999843 5799999998
Q ss_pred hhhhhhcC---CCccEEEEcCCCCC-ccHHHHHHHHHhhcCCC--CCCEEEEEecCCCC
Q 042616 103 QKLLMGDY---RGADFVLIDCNIDI-DGHKNVFRAAKESVMHG--SGAGVIVGYNALPK 155 (220)
Q Consensus 103 ~~~L~~~~---~~~D~VfiD~~k~~-~~y~~~l~~l~~~~~L~--~~Ggviv~dNv~~~ 155 (220)
-..+.... +.=-+|+||.+-+. .+|.++.+.+.+. ++ +.|.+.+-+-+..+
T Consensus 144 ~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~--~kRf~~g~yaiWYPik~r 200 (279)
T COG2961 144 FLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEA--YKRFATGTYAIWYPIKDR 200 (279)
T ss_pred HHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHH--HHhhcCceEEEEEeecch
Confidence 77664332 33579999998722 5787777666554 22 44666666655543
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=90.49 E-value=5.7 Score=36.47 Aligned_cols=125 Identities=18% Similarity=0.151 Sum_probs=68.3
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc-
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG- 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g- 100 (220)
+...|...+|=..+++..+++.++-..+| +....+.+...+++ +.+|++-...=+......+..+....-++.++.-
T Consensus 57 r~~~p~~~~le~~la~l~g~~~~v~~ssG-~~Ai~~al~al~~~-Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~ 134 (390)
T PRK08133 57 RFTNPTVTMFQERLAALEGAEACVATASG-MAAILAVVMALLQA-GDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLT 134 (390)
T ss_pred CCCChHHHHHHHHHHHHhCCCcEEEECCH-HHHHHHHHHHHhCC-CCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCC
Confidence 45678888888888888888877755432 33333333323444 7788776554122233333333322124555433
Q ss_pred chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|..++...+.++..+|++..+... .+..++.+.+. ..|..|++||++.
T Consensus 135 d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~------~~gi~livD~t~~ 186 (390)
T PRK08133 135 DLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAH------AAGALLVVDNCFC 186 (390)
T ss_pred CHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHH------HcCCEEEEECCCc
Confidence 334433222356789998765411 12233333333 3489999999874
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=90.49 E-value=6.2 Score=36.60 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=68.3
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+...|...+|-..+++..+.+..+-.++| +......|...+.+ +.+|++.+..=+.........+....-.+.++..
T Consensus 52 sr~~~p~~~~le~~lA~l~g~~~~v~~~sG-~~Ai~~al~~l~~~-Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~ 129 (418)
T TIGR01326 52 SRLMNPTTDVLEQRIAALEGGVAALAVASG-QAAITYAILNLAQA-GDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDP 129 (418)
T ss_pred ECCCChhHHHHHHHHHHHhCCCeEEEEccH-HHHHHHHHHHHhCC-CCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECC
Confidence 456778888999999998887777655543 33333333323444 7888876653112222223333311123444332
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+.+..++|++...... .+..++.+.+. ..|..+|+||+...
T Consensus 130 ~d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~------~~~i~livD~t~~~ 183 (418)
T TIGR01326 130 DDPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAH------AHGVPLIVDNTFAT 183 (418)
T ss_pred CCHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHH------HcCCEEEEECCCch
Confidence 333333222356789999865411 12233333333 34899999998753
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=90.46 E-value=4.9 Score=34.03 Aligned_cols=99 Identities=15% Similarity=0.131 Sum_probs=57.6
Q ss_pred HHhhCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CC
Q 042616 35 LAAGNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YR 111 (220)
Q Consensus 35 La~~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~ 111 (220)
++...+.+.||-.| +|.+|..++.+|.+. +.+|+++..+ ++..+.+++ + +....+.....+..+.+..+ ..
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~---g~~v~~~~~~-~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~ 204 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKAL---GATVIGTVSS-EEKAELARA-A-GADHVINYRDEDFVERVREITGGR 204 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHc---CCEEEEEcCC-HHHHHHHHH-C-CCCEEEeCCchhHHHHHHHHcCCC
Confidence 34455678899888 466888888888875 6789999988 887777754 2 22111111111222222222 24
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
.+|++| |+-. . ...+.+.+. +++ +|.++
T Consensus 205 ~~d~vl-~~~~--~---~~~~~~~~~--l~~-~g~~v 232 (320)
T cd05286 205 GVDVVY-DGVG--K---DTFEGSLDS--LRP-RGTLV 232 (320)
T ss_pred CeeEEE-ECCC--c---HhHHHHHHh--hcc-CcEEE
Confidence 699887 6544 2 234555555 555 45444
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=90.45 E-value=1.1 Score=40.07 Aligned_cols=78 Identities=14% Similarity=0.067 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhh--hhhhcCCCccE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQK--LLMGDYRGADF 115 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~--~L~~~~~~~D~ 115 (220)
..++||-.| + +|+.+.+|+..+...+-+|+++..+ +...+.....+. +...+++++.+|..+ .+......+|.
T Consensus 4 ~~k~iLVTG-a-tGfIGs~l~~~L~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ 80 (351)
T PLN02650 4 QKETVCVTG-A-SGFIGSWLVMRLLERGYTVRATVRD-PANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTG 80 (351)
T ss_pred CCCEEEEeC-C-cHHHHHHHHHHHHHCCCEEEEEEcC-cchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCE
Confidence 457899888 3 7999999988887767799988888 655443333222 222468899998754 23333346798
Q ss_pred EEEcC
Q 042616 116 VLIDC 120 (220)
Q Consensus 116 VfiD~ 120 (220)
||--+
T Consensus 81 ViH~A 85 (351)
T PLN02650 81 VFHVA 85 (351)
T ss_pred EEEeC
Confidence 88544
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=90.42 E-value=2.3 Score=40.06 Aligned_cols=108 Identities=14% Similarity=0.084 Sum_probs=58.1
Q ss_pred CCEEEEEcCCchHHHHHH--HHHHcC-CCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE----cchhhhhh----
Q 042616 41 AQLIVMACSSIAVSRTLA--LVAAAR-QTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK----GDAQKLLM---- 107 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~--LA~A~~-~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~----gda~~~L~---- 107 (220)
|..|+-+|..|+|=+|.. ||..+. ..+.+|.-|+.| ..+.. |.+.++ +-...+.+.. .++.++..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D-~~R~~-a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD-LYRPA-AIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc-ccchH-HHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 556778888669999885 565543 235677666666 44433 222221 1001122222 23333321
Q ss_pred hc-CCCccEEEEcCCCCCc---cHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 108 GD-YRGADFVLIDCNIDID---GHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 108 ~~-~~~~D~VfiD~~k~~~---~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.. ...+|+|++|.+-+.. .....+..+... +.|.+.++|.|..
T Consensus 177 ~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~--~~p~e~lLVvda~ 223 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRLQIDEELMEELAAIKEI--LNPDEILLVVDAM 223 (428)
T ss_pred HHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHh--hCCceEEEEEecc
Confidence 11 3579999999987221 223444455555 6676777777754
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=90.37 E-value=3.7 Score=40.15 Aligned_cols=82 Identities=16% Similarity=0.076 Sum_probs=54.9
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-------cc--CCcEEEEEcchhhh--
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-------RY--ANCIEFVKGDAQKL-- 105 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-------g~--~~~Ve~v~gda~~~-- 105 (220)
..+..+.||-+|. +|..+.+++..+...|.+|+++..+ ++.++...+.+. +. ..+++++.+|..+.
T Consensus 76 ~~~~gKvVLVTGA--TGgIG~aLAr~LLk~G~~Vval~Rn-~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 76 DTKDEDLAFVAGA--TGKVGSRTVRELLKLGFRVRAGVRS-AQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred ccCCCCEEEEECC--CCHHHHHHHHHHHHCCCeEEEEeCC-HHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 3446678998883 5777777777776557899999999 776654443332 11 13588999998652
Q ss_pred hhhcCCCccEEEEcCC
Q 042616 106 LMGDYRGADFVLIDCN 121 (220)
Q Consensus 106 L~~~~~~~D~VfiD~~ 121 (220)
+....+.+|.||.-+.
T Consensus 153 I~~aLggiDiVVn~AG 168 (576)
T PLN03209 153 IGPALGNASVVICCIG 168 (576)
T ss_pred HHHHhcCCCEEEEccc
Confidence 2233467899887654
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.53 Score=40.90 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=45.6
Q ss_pred CcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEE
Q 042616 67 GGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGV 146 (220)
Q Consensus 67 ~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggv 146 (220)
..+|+++|++ ++.++.|++. |. +.-...+ .+.+ ..+|+|++-.+. ....++++.+.+. +++ | .
T Consensus 11 ~~~v~g~d~~-~~~~~~a~~~--g~---~~~~~~~-~~~~----~~~DlvvlavP~--~~~~~~l~~~~~~--~~~-~-~ 73 (258)
T PF02153_consen 11 DVEVYGYDRD-PETLEAALEL--GI---IDEASTD-IEAV----EDADLVVLAVPV--SAIEDVLEEIAPY--LKP-G-A 73 (258)
T ss_dssp TSEEEEE-SS-HHHHHHHHHT--TS---SSEEESH-HHHG----GCCSEEEE-S-H--HHHHHHHHHHHCG--S-T-T-S
T ss_pred CeEEEEEeCC-HHHHHHHHHC--CC---eeeccCC-HhHh----cCCCEEEEcCCH--HHHHHHHHHhhhh--cCC-C-c
Confidence 3799999999 8888777654 32 2222233 3333 357999999998 8889999999997 643 4 5
Q ss_pred EEEecCCCCC
Q 042616 147 IVGYNALPKG 156 (220)
Q Consensus 147 iv~dNv~~~g 156 (220)
+|.|=.-.+.
T Consensus 74 iv~Dv~SvK~ 83 (258)
T PF02153_consen 74 IVTDVGSVKA 83 (258)
T ss_dssp EEEE--S-CH
T ss_pred EEEEeCCCCH
Confidence 6666333344
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.31 Score=44.92 Aligned_cols=135 Identities=11% Similarity=-0.033 Sum_probs=65.2
Q ss_pred hhhHHHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHH
Q 042616 7 ENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKK 86 (220)
Q Consensus 7 e~a~~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~ 86 (220)
+++.+|||.+--..+...=..+-.-|..-..-..|+.|||+|.| .|.-.+++-.-. ++-..++-+|.+ |..-+..-.
T Consensus 80 dm~V~Ayias~lp~~Yasv~asL~~L~~~~~dfapqsiLDvG~G-Pgtgl~A~n~i~-Pdl~sa~ile~s-p~lrkV~~t 156 (484)
T COG5459 80 DMAVKAYIASRLPQTYASVRASLDELQKRVPDFAPQSILDVGAG-PGTGLWALNDIW-PDLKSAVILEAS-PALRKVGDT 156 (484)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCcCcchhhccCCC-CchhhhhhcccC-CCchhhhhhccC-HHHHHHHHH
Confidence 45778888872222111101111112222234568999999985 665433333333 324566777777 554333322
Q ss_pred Hhcc-cCCcEEEEEcchhh-hhhhc--CCCccEEEE------cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 87 SLGR-YANCIEFVKGDAQK-LLMGD--YRGADFVLI------DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 87 ~l~g-~~~~Ve~v~gda~~-~L~~~--~~~~D~Vfi------D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..+. ...+.....+|..+ -+ .+ .+.|+++++ |... .....+++.+... +.| ||.+|.-
T Consensus 157 l~~nv~t~~td~r~s~vt~dRl-~lp~ad~ytl~i~~~eLl~d~~e--k~i~~~ie~lw~l--~~~-gg~lViv 224 (484)
T COG5459 157 LAENVSTEKTDWRASDVTEDRL-SLPAADLYTLAIVLDELLPDGNE--KPIQVNIERLWNL--LAP-GGHLVIV 224 (484)
T ss_pred HHhhcccccCCCCCCccchhcc-CCCccceeehhhhhhhhccccCc--chHHHHHHHHHHh--ccC-CCeEEEE
Confidence 2221 11223333344322 22 11 245777654 3332 3345577777777 766 6665543
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=5.2 Score=36.93 Aligned_cols=125 Identities=17% Similarity=0.125 Sum_probs=67.5
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchh-HHHHHHHHhcccCCcEEEEEc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIG-DIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~-~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
+.-.|...+|=..+++..++...+-.++| +....+.+...+.+ |.+|++..+. -. .....+..+....-.+.++-.
T Consensus 61 r~~~p~~~~le~~lA~l~g~~~~i~~~sG-~~Al~~~l~~ll~~-Gd~Viv~~~~-y~~t~~~~~~~~~~~G~~v~~vd~ 137 (403)
T PRK07503 61 RISNPTLALLEQRMASLEGGEAAVALASG-MGAITATLWTLLRP-GDEVIVDQTL-YGCTFAFLHHGLGEFGVTVRHVDL 137 (403)
T ss_pred CCCCchHHHHHHHHHHHhCCCcEEEEcCH-HHHHHHHHHHHcCC-CCEEEEccCc-cchHHHHHHHHHhhCCEEEEEeCC
Confidence 45778889999999998887776655543 33333333323444 7788876553 21 222222333321113444332
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+..+..+|++..+... .+..++.+.+.+ .|.+||.||+...
T Consensus 138 ~d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~------~gi~lIvD~a~a~ 191 (403)
T PRK07503 138 TDPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHG------AGAKVVVDNTYCT 191 (403)
T ss_pred CCHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHH------cCCEEEEECCCcc
Confidence 334433333346789998644311 133333343332 4889999999853
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=90.33 E-value=1 Score=40.88 Aligned_cols=79 Identities=14% Similarity=0.018 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCC-cEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcchhhh--hhhcCCCcc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTG-GRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQKL--LMGDYRGAD 114 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~-grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~~--L~~~~~~~D 114 (220)
.++++||-+| | +|+.+-+|++.+...+ -+|++++.+ ++.......... ....+++++.+|..+. +......+|
T Consensus 12 ~~~~~VlVTG-g-tGfIGs~lv~~L~~~~g~~V~~l~r~-~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d 88 (386)
T PLN02427 12 IKPLTICMIG-A-GGFIGSHLCEKLMTETPHKVLALDVY-NDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD 88 (386)
T ss_pred ccCcEEEEEC-C-cchHHHHHHHHHHhcCCCEEEEEecC-chhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence 3467899988 3 7888888888887643 489999987 554322111100 1224699999987542 333345689
Q ss_pred EEEEcC
Q 042616 115 FVLIDC 120 (220)
Q Consensus 115 ~VfiD~ 120 (220)
.||-=+
T Consensus 89 ~ViHlA 94 (386)
T PLN02427 89 LTINLA 94 (386)
T ss_pred EEEEcc
Confidence 888544
|
|
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=90.22 E-value=5 Score=34.81 Aligned_cols=98 Identities=19% Similarity=0.179 Sum_probs=58.4
Q ss_pred hCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccE
Q 042616 38 GNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~ 115 (220)
..+.+.||-.| +|.+|..++.+|++. +.+|+++..+ ++..+.+++.+. ....+.....+..+.+... .+.+|.
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~---G~~vi~~~~~-~~~~~~~~~~~g-~~~~~~~~~~~~~~~v~~~~~~~~d~ 217 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKLL---GARVVGIAGS-DEKCRWLVEELG-FDAAINYKTPDLAEALKEAAPDGIDV 217 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHhhcC-CceEEecCChhHHHHHHHhccCCceE
Confidence 34567888777 466888888888774 6799999999 888777766442 2111222222222222222 256997
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+| |+-- . ..++.+.++ +++ +|.++.
T Consensus 218 vi-~~~g--~---~~~~~~~~~--l~~-~G~~v~ 242 (329)
T cd05288 218 YF-DNVG--G---EILDAALTL--LNK-GGRIAL 242 (329)
T ss_pred EE-Ecch--H---HHHHHHHHh--cCC-CceEEE
Confidence 76 6644 2 356666776 655 555553
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=90.20 E-value=4.1 Score=38.04 Aligned_cols=127 Identities=16% Similarity=0.065 Sum_probs=68.8
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+...|...+|-..++...+++..+-.++| +...++.+.....+ +.+|++.+..=..........+....-.+.++..
T Consensus 53 ~r~~~pt~~~Le~~lA~l~g~~~~l~~ssG-~~Ai~~al~al~~~-Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~ 130 (425)
T PRK06084 53 TRIMNPTNDVLEQRVAALEGGVGALAVASG-MAAITYAIQTIAEA-GDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAH 130 (425)
T ss_pred cCCCCchHHHHHHHHHHHhCCCceeEehhH-HHHHHHHHHHHhCC-CCEEEEeCCCcchHHHHHHHhcccceeEEEEECC
Confidence 356778889999999998887777655533 33333333323344 7888887664111233333333311112444432
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC-c---cHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI-D---GHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~-~---~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+.....+|++..+... . +..++.+.+.+ .|.+||+||+...
T Consensus 131 ~d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~------~~i~vVvD~a~a~ 184 (425)
T PRK06084 131 DDIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHR------HGVPLIVDNTVAT 184 (425)
T ss_pred CCHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHH------cCCEEEEECCCcc
Confidence 333332222345789999754311 2 22333333333 4889999999853
|
|
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=90.17 E-value=4.4 Score=35.66 Aligned_cols=99 Identities=13% Similarity=0.089 Sum_probs=59.1
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE-cchhhhhhhc-CCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK-GDAQKLLMGD-YRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~-gda~~~L~~~-~~~~D 114 (220)
...+.++||-.|+|++|..++.+|++. +.+|+++..+ ++..+.+++ + |...-+.... .+..+.+..+ .+.+|
T Consensus 162 ~~~~~~~vlV~g~g~vg~~~~~~a~~~---G~~vi~~~~~-~~~~~~~~~-~-g~~~~i~~~~~~~~~~~~~~~~~~~~d 235 (345)
T cd08260 162 RVKPGEWVAVHGCGGVGLSAVMIASAL---GARVIAVDID-DDKLELARE-L-GAVATVNASEVEDVAAAVRDLTGGGAH 235 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---CCeEEEEeCC-HHHHHHHHH-h-CCCEEEccccchhHHHHHHHHhCCCCC
Confidence 345567898889888999998888875 6689999999 887777754 2 3311122222 2322222222 23799
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
++| |+-. . ...++.+.+. +++ +|.++.
T Consensus 236 ~vi-~~~g--~--~~~~~~~~~~--l~~-~g~~i~ 262 (345)
T cd08260 236 VSV-DALG--I--PETCRNSVAS--LRK-RGRHVQ 262 (345)
T ss_pred EEE-EcCC--C--HHHHHHHHHH--hhc-CCEEEE
Confidence 777 6543 1 2334555555 555 555554
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=90.14 E-value=0.88 Score=42.41 Aligned_cols=102 Identities=23% Similarity=0.281 Sum_probs=58.8
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-----ccC---------CcEEEEEcchhhhhhh
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-----RYA---------NCIEFVKGDAQKLLMG 108 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-----g~~---------~~Ve~v~gda~~~L~~ 108 (220)
+|-.+|||++|.++..+.... |-.|+|+|.| +++++..++... |++ .+..| .-|..+.+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~---GHeVv~vDid-~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f-Ttd~~~a~-- 74 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAEL---GHEVVCVDID-ESKVELLNKGISPIYEPGLEELLKENLASGRLRF-TTDYEEAV-- 74 (414)
T ss_pred ceEEECCchHHHHHHHHHHHc---CCeEEEEeCC-HHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE-EcCHHHHH--
Confidence 567789888888776544332 5589999999 999887665432 221 11222 22333333
Q ss_pred cCCCccEEEEcCCCCCc-----c--H-HHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 109 DYRGADFVLIDCNIDID-----G--H-KNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 109 ~~~~~D~VfiD~~k~~~-----~--y-~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
...|++||--+.++. + | ....+.+.+. + ++..+||...+...|
T Consensus 75 --~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~--~-~~~~vvV~KSTVPvG 125 (414)
T COG1004 75 --KDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEI--L-DGKAVVVIKSTVPVG 125 (414)
T ss_pred --hcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhh--c-CCCeEEEEcCCCCCC
Confidence 356888886544221 1 1 3344555555 4 334788876555544
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=90.13 E-value=5.8 Score=33.60 Aligned_cols=95 Identities=17% Similarity=0.087 Sum_probs=57.7
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
+...+.++||-.|+|.+|..++.+|.+.. .+ |++++.+ ++..+.+++. |..+.+..... ..++ ...+|
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g---~~~vi~~~~~-~~~~~~~~~~--g~~~~~~~~~~---~~~~--~~~~d 161 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAG---AREVVGVDPD-AARRELAEAL--GPADPVAADTA---DEIG--GRGAD 161 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---CCcEEEECCC-HHHHHHHHHc--CCCccccccch---hhhc--CCCCC
Confidence 34556788988898888999998998763 45 9999999 8888777764 21111111111 1111 35799
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
++|--... ...++...+. +++ +|.++.
T Consensus 162 ~vl~~~~~-----~~~~~~~~~~--l~~-~g~~~~ 188 (277)
T cd08255 162 VVIEASGS-----PSALETALRL--LRD-RGRVVL 188 (277)
T ss_pred EEEEccCC-----hHHHHHHHHH--hcC-CcEEEE
Confidence 88743233 2245555665 555 565553
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=90.11 E-value=3.2 Score=37.15 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=57.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D~ 115 (220)
.+.++||-.|+|.+|..++.+|++. +.+ +++++.+ ++..+.+++ + +...-+.....+..+.+... ...+|+
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~---G~~~vi~~~~s-~~~~~~~~~-~-g~~~v~~~~~~~~~~~l~~~~~~~~~d~ 259 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAF---GASPIIAVDVR-DEKLAKAKE-L-GATHTVNAAKEDAVAAIREITGGRGVDV 259 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc---CCCeEEEEeCC-HHHHHHHHH-h-CCceEecCCcccHHHHHHHHhCCCCCCE
Confidence 5567888778888999999999875 445 9999998 777777654 2 22111111122222222222 356998
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|| |+-. .. ...+.+.+. |++ +|.++.
T Consensus 260 vl-d~vg--~~--~~~~~~~~~--l~~-~G~~v~ 285 (367)
T cd08263 260 VV-EALG--KP--ETFKLALDV--VRD-GGRAVV 285 (367)
T ss_pred EE-EeCC--CH--HHHHHHHHH--Hhc-CCEEEE
Confidence 87 6644 22 245556666 655 555543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=90.11 E-value=3.2 Score=35.24 Aligned_cols=81 Identities=17% Similarity=0.048 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCc------------------hhHHHHHHHHhcccC--CcEEEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGV------------------IGDIDASKKSLGRYA--NCIEFVK 99 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~------------------~~~~~~Ar~~l~g~~--~~Ve~v~ 99 (220)
+..+|+-+|+|++|...+.....+. -|+++-+|.|. ..+++.+++.++.+. -+|+.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~ 97 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAG--VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 4567999999888887775443332 38888886662 234455555555221 2355555
Q ss_pred cch-hhhhhhcCCCccEEEEcCCC
Q 042616 100 GDA-QKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 100 gda-~~~L~~~~~~~D~VfiD~~k 122 (220)
... .+-+..+...+|+||.-.+.
T Consensus 98 ~~i~~~~~~~~~~~~DvVi~~~d~ 121 (228)
T cd00757 98 ERLDAENAEELIAGYDLVLDCTDN 121 (228)
T ss_pred ceeCHHHHHHHHhCCCEEEEcCCC
Confidence 543 12222334579988865554
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK10037 cell division protein; Provisional | Back alignment and domain information |
|---|
Probab=90.09 E-value=2.6 Score=36.08 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=23.2
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCCchhH
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSGVIGD 80 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~ 80 (220)
||+|-+|+. ||.++...|-+|.-||.| ++.
T Consensus 11 GGvGKTT~a~nLA~~La~~G~rVLlID~D-~q~ 42 (250)
T PRK10037 11 GGVGTTSITAALAWSLQMLGENVLVIDAC-PDN 42 (250)
T ss_pred CCccHHHHHHHHHHHHHhcCCcEEEEeCC-hhh
Confidence 568888754 777777657799999999 874
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=90.08 E-value=3 Score=39.28 Aligned_cols=108 Identities=12% Similarity=0.034 Sum_probs=57.0
Q ss_pred CCEEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE----cchhh----hhhh
Q 042616 41 AQLIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK----GDAQK----LLMG 108 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~----gda~~----~L~~ 108 (220)
+..|+-+|-.|+|=+|.. ||..+...+.+|.-|+.| +.+. .|...++ +-...+.+.. .|+.. .+..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D-~~R~-aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD-TFRA-GAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc-ccch-hHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 566777886558988775 776665545577666666 5544 2333332 1112243332 24322 2222
Q ss_pred c-CCCccEEEEcCCCCCccHHHHHHHHHhhc-CCCCCCEEEEEe
Q 042616 109 D-YRGADFVLIDCNIDIDGHKNVFRAAKESV-MHGSGAGVIVGY 150 (220)
Q Consensus 109 ~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~-~L~~~Ggviv~d 150 (220)
+ ...+|+||||..-+...-.+.++.+.... ...|.-.++|.|
T Consensus 178 ~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVld 221 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMD 221 (429)
T ss_pred HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEec
Confidence 2 25799999999863232234444444420 044544556665
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=90.06 E-value=4.9 Score=32.91 Aligned_cols=123 Identities=12% Similarity=0.040 Sum_probs=62.1
Q ss_pred CCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEc-chhhhhhhcCCCccE
Q 042616 39 NNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKG-DAQKLLMGDYRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~g-da~~~L~~~~~~~D~ 115 (220)
.+.++++-+| ||++|..... .+...+.+|+-+.++ ++.++...+.+. .....+..... +..+ +.......|+
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~---~l~~~g~~V~l~~R~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~di 100 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAV---LLAREGARVVLVGRD-LERAQKAADSLRARFGEGVGAVETSDDAA-RAAAIKGADV 100 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHH---HHHHCCCEEEEEcCC-HHHHHHHHHHHHhhcCCcEEEeeCCCHHH-HHHHHhcCCE
Confidence 3557899998 3555644433 322336689889999 777666555443 22222333322 2222 2232356899
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC---CccceEEEeeecCCcEEE
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG---SWRGYKTHFLPIGEGLLV 174 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g---~~~~~~s~~lPig~Gl~v 174 (220)
||.-.+. +.+. ....... . +.+.+++|=...+- ....++...+++..|+.+
T Consensus 101 Vi~at~~--g~~~--~~~~~~~--~--~~~~vv~D~~~~~~~~~~~~~~~~~~~~~~g~~~~ 154 (194)
T cd01078 101 VFAAGAA--GVEL--LEKLAWA--P--KPLAVAADVNAVPPVGIEGIDVPDKGVDREGKVPY 154 (194)
T ss_pred EEECCCC--Ccee--chhhhcc--c--CceeEEEEccCCCCCCcccccccCCceecCCCeEE
Confidence 8887666 5541 1112222 2 23677777433321 111334444555555433
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=90.05 E-value=8.6 Score=35.29 Aligned_cols=105 Identities=11% Similarity=0.038 Sum_probs=63.6
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHHHhcccCCcEEEEE-cchhhhhhhc--CCC
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKKSLGRYANCIEFVK-GDAQKLLMGD--YRG 112 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~-gda~~~L~~~--~~~ 112 (220)
...+.+.||-.|+|.+|..++.+|++. +.+ +++++.+ +++.+.|++. |. +.+.... .+..+.+..+ ...
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~---Ga~~vi~~d~~-~~r~~~a~~~--Ga-~~v~~~~~~~~~~~v~~~~~~~g 254 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLL---GAAVVIVGDLN-PARLAQARSF--GC-ETVDLSKDATLPEQIEQILGEPE 254 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---CCceEEEeCCC-HHHHHHHHHc--CC-eEEecCCcccHHHHHHHHcCCCC
Confidence 345678888789988999998888875 444 6667888 8889988874 33 2111111 1333333222 246
Q ss_pred ccEEEEcCCCCCc-----------cHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 113 ADFVLIDCNIDID-----------GHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 113 ~D~VfiD~~k~~~-----------~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+|++| |+--. . +-...++.+... +++ ||.|+.-.+.
T Consensus 255 ~Dvvi-d~~G~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~G~i~~~G~~ 301 (393)
T TIGR02819 255 VDCAV-DCVGF-EARGHGHDGKKEAPATVLNSLMEV--TRV-GGAIGIPGLY 301 (393)
T ss_pred CcEEE-ECCCC-ccccccccccccchHHHHHHHHHH--hhC-CCEEEEeeec
Confidence 89776 43320 1 012467777777 765 7777765443
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=90.04 E-value=2.6 Score=39.65 Aligned_cols=136 Identities=15% Similarity=0.109 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEE-Ecchhhh---hhhcC--
Q 042616 40 NAQLIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFV-KGDAQKL---LMGDY-- 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v-~gda~~~---L~~~~-- 110 (220)
+++.|+=+|-+|+|=+|+. ||..+...+.+|.-|+.| +.++....+... +-...+.++ ..+..++ +..+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 4567888897679999986 554444334567667777 665443333222 111224443 3344333 32222
Q ss_pred CCccEEEEcCCCCCccHHHHHHHHHhhc-CCCCCCEEEEEecCCCCC-C---cc-ceEEEeeecCCcEEEEEEeec
Q 042616 111 RGADFVLIDCNIDIDGHKNVFRAAKESV-MHGSGAGVIVGYNALPKG-S---WR-GYKTHFLPIGEGLLVTRIGEN 180 (220)
Q Consensus 111 ~~~D~VfiD~~k~~~~y~~~l~~l~~~~-~L~~~Ggviv~dNv~~~g-~---~~-~~~s~~lPig~Gl~v~~~~~~ 180 (220)
..+|+||||..-+...-.+.++.+.... ...|..-++| -++...+ . .. .|.. +++ +|+.++..-.+
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV-LsATtk~~d~~~i~~~F~~--~~i-dglI~TKLDET 390 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT-LSASMKSKDMIEIITNFKD--IHI-DGIVFTKFDET 390 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEE-ECCccChHHHHHHHHHhcC--CCC-CEEEEEcccCC
Confidence 2589999999873222233333333320 0234334444 3443332 1 11 4543 443 67877777654
|
|
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=90.04 E-value=4.9 Score=36.09 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=58.4
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEc--chhhhhhhc-CCC
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKG--DAQKLLMGD-YRG 112 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g--da~~~L~~~-~~~ 112 (220)
...+.++||-.|+|.+|..++.+|++. +. .|++++.+ ++..+.+++ + |....+..... +..+.+..+ .+.
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~---G~~~v~~~~~~-~~~~~~~~~-~-g~~~~v~~~~~~~~~~~~l~~~~~~~ 253 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGCKAA---GASRIIAVDIN-KDKFEKAKQ-L-GATECINPRDQDKPIVEVLTEMTDGG 253 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCC-HHHHHHHHH-h-CCCeecccccccchHHHHHHHHhCCC
Confidence 345568888889888888888888875 44 58889988 888887754 3 22111222222 222222121 357
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCC-CCCEEEEE
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHG-SGAGVIVG 149 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~-~~Ggviv~ 149 (220)
+|+++ |+-- . ...+..+.+. ++ + +|.++.
T Consensus 254 ~d~vi-d~~g--~--~~~~~~~~~~--l~~~-~G~~v~ 283 (365)
T cd05279 254 VDYAF-EVIG--S--ADTLKQALDA--TRLG-GGTSVV 283 (365)
T ss_pred CcEEE-ECCC--C--HHHHHHHHHH--hccC-CCEEEE
Confidence 99887 6643 1 2345556666 65 5 565554
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=90.03 E-value=0.86 Score=40.83 Aligned_cols=80 Identities=13% Similarity=0.047 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHH-HHHHhcc----cCCcEEEEEcchhhh--hhhcCC
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDA-SKKSLGR----YANCIEFVKGDAQKL--LMGDYR 111 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~-Ar~~l~g----~~~~Ve~v~gda~~~--L~~~~~ 111 (220)
++.++||-+| | +|+...+|+..+...+-+|++++.. ...... ....... ...+++++.+|..+. +..+..
T Consensus 13 ~~~~~vlVtG-a-tGfiG~~lv~~L~~~g~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~ 89 (348)
T PRK15181 13 LAPKRWLITG-V-AGFIGSGLLEELLFLNQTVIGLDNF-STGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK 89 (348)
T ss_pred ccCCEEEEEC-C-ccHHHHHHHHHHHHCCCEEEEEeCC-CCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh
Confidence 4457899988 3 7999888888887656689999986 432221 1111111 114688999998642 333345
Q ss_pred CccEEEEcCC
Q 042616 112 GADFVLIDCN 121 (220)
Q Consensus 112 ~~D~VfiD~~ 121 (220)
.+|.||-=+.
T Consensus 90 ~~d~ViHlAa 99 (348)
T PRK15181 90 NVDYVLHQAA 99 (348)
T ss_pred CCCEEEECcc
Confidence 6899885553
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=89.99 E-value=6.6 Score=35.92 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=68.6
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhH-HHHHHHHhcccCCcEEEEEc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGD-IDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~-~~~Ar~~l~g~~~~Ve~v~g 100 (220)
+.-.|...+|-..+++..++..++-.++| +....+.+. .+.+ +.+|++.+.. -.. ....+..+....-++.++..
T Consensus 43 r~~~p~~~~le~~la~l~g~~~~l~~~sG-~~al~~~l~-ll~~-Gd~Vl~~~~~-y~~~~~~~~~~~~~~G~~v~~vd~ 118 (378)
T TIGR01329 43 RSGNPTRTALESLLAKLDKADRAFAFSSG-MAALDVITR-LLNN-GDEIIAGDDL-YGGTDRLLTQVVPRSGVVVVHVDT 118 (378)
T ss_pred CCCChHHHHHHHHHHHHhCCCcEEEECCH-HHHHHHHHH-HhCC-CCEEEEcCCC-chHHHHHHHHHHHHcCcEEEEeCC
Confidence 44567788888888888888777766643 333333333 4444 7888877655 322 22223323212123444432
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC-c---cHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI-D---GHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~-~---~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|..++...+.....+|++..+... . +..++.+.+.+ .|.++|+||+..
T Consensus 119 ~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~------~g~~vivD~a~~ 171 (378)
T TIGR01329 119 TDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHA------QNALVVVDNTMM 171 (378)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHH------cCCEEEEECCCc
Confidence 344443333356789998876511 1 33333444333 489999999874
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.89 E-value=1.6 Score=36.41 Aligned_cols=77 Identities=17% Similarity=0.099 Sum_probs=49.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcchhhh------hhhcCCCcc
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQKL------LMGDYRGAD 114 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~~------L~~~~~~~D 114 (220)
+++|-+|+ +|..+..++..+.+.|.+|+.++.+ ++..+...+.+. ....+++++..|..+. +......+|
T Consensus 2 ~~vlItGa--s~giG~~~a~~l~~~G~~Vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 2 KKILIIGA--TSDIARACARRYAAAGARLYLAARD-VERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred cEEEEEcC--CcHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 46888883 4666666666666557799999999 766655444443 2235788888876542 222224579
Q ss_pred EEEEcCC
Q 042616 115 FVLIDCN 121 (220)
Q Consensus 115 ~VfiD~~ 121 (220)
.++..+.
T Consensus 79 ~vv~~ag 85 (243)
T PRK07102 79 IVLIAVG 85 (243)
T ss_pred EEEECCc
Confidence 9996543
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=89.89 E-value=3.3 Score=34.61 Aligned_cols=92 Identities=9% Similarity=-0.045 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCch------------------hHHHHHHHHhcccC--CcEEEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVI------------------GDIDASKKSLGRYA--NCIEFVK 99 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~------------------~~~~~Ar~~l~g~~--~~Ve~v~ 99 (220)
+..+|+-+|+|+.|...+.....+. -++++-+|.|.- .+++.+++.++.+. -+|+...
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~G--Vg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSG--IGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT 97 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcC--CCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 4466888999878877665333322 388998987721 12345556665222 2355555
Q ss_pred cchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHH
Q 042616 100 GDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAK 135 (220)
Q Consensus 100 gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~ 135 (220)
....+..+.....||+|+...+. .....++..+-
T Consensus 98 ~~~~~~~~~~~~~~dvVi~~~~~--~~~~~~ln~~c 131 (197)
T cd01492 98 DDISEKPEEFFSQFDVVVATELS--RAELVKINELC 131 (197)
T ss_pred cCccccHHHHHhCCCEEEECCCC--HHHHHHHHHHH
Confidence 44433233334689998865554 33333344443
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=89.79 E-value=3.7 Score=36.40 Aligned_cols=103 Identities=8% Similarity=0.033 Sum_probs=60.1
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcE-EEEEcchhhhhhhc--CCCc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCI-EFVKGDAQKLLMGD--YRGA 113 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~V-e~v~gda~~~L~~~--~~~~ 113 (220)
...+.+.||-.|+|++|..++.+|+++. ...+++++.+ ++..+.+++. +. +.+ .....+..+.+..+ ...+
T Consensus 171 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G--~~~v~~~~~~-~~~~~~~~~~--g~-~~v~~~~~~~~~~~~~~~~~~~~v 244 (350)
T cd08256 171 NIKFDDVVVLAGAGPLGLGMIGAARLKN--PKKLIVLDLK-DERLALARKF--GA-DVVLNPPEVDVVEKIKELTGGYGC 244 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCC-HHHHHHHHHc--CC-cEEecCCCcCHHHHHHHHhCCCCC
Confidence 3455677877888889999999998863 2467889998 7777666553 32 211 11112333323232 2358
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|++| |+-. .. ..+..+.+. +++ +|.++.-..+
T Consensus 245 dvvl-d~~g--~~--~~~~~~~~~--l~~-~G~~v~~g~~ 276 (350)
T cd08256 245 DIYI-EATG--HP--SAVEQGLNM--IRK-LGRFVEFSVF 276 (350)
T ss_pred CEEE-ECCC--Ch--HHHHHHHHH--hhc-CCEEEEEccC
Confidence 9665 7644 22 235556666 655 6666654433
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=89.75 E-value=5.8 Score=34.99 Aligned_cols=95 Identities=9% Similarity=0.075 Sum_probs=55.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.+..+++-.|+|.+|..++.+|++. +.++++++.+ ++..+.+++ + +. +. ++.....+........+|++|
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a~~~---G~~v~~~~~~-~~~~~~~~~-~-g~-~~--vi~~~~~~~~~~~~~~~d~v~- 237 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFAKAL---GAEVTAFSRS-PSKKEDALK-L-GA-DE--FIATKDPEAMKKAAGSLDLII- 237 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc---CCeEEEEcCC-HHHHHHHHH-c-CC-cE--EecCcchhhhhhccCCceEEE-
Confidence 4456777688888898888888875 5689999999 888877754 2 21 11 111111111112246799888
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|+-. .. ..++.+.+. |++.|.++.+
T Consensus 238 ~~~g--~~--~~~~~~~~~--l~~~G~~v~~ 262 (337)
T cd05283 238 DTVS--AS--HDLDPYLSL--LKPGGTLVLV 262 (337)
T ss_pred ECCC--Cc--chHHHHHHH--hcCCCEEEEE
Confidence 5543 22 124555555 5543444433
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >CHL00175 minD septum-site determining protein; Validated | Back alignment and domain information |
|---|
Probab=89.65 E-value=2.6 Score=36.58 Aligned_cols=37 Identities=27% Similarity=0.278 Sum_probs=26.5
Q ss_pred CEEEEEcC-CchHHHHHH--HHHHcCCCCcEEEEEeCCchh
Q 042616 42 QLIVMACS-SIAVSRTLA--LVAAARQTGGRVVCILSGVIG 79 (220)
Q Consensus 42 ~~ILEIGt-g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~ 79 (220)
+.|.-+++ ||+|-+|+. ||.++...+-+|.-||.| +.
T Consensus 16 ~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D-~~ 55 (281)
T CHL00175 16 RIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDAD-IG 55 (281)
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC-CC
Confidence 44444443 678988865 777777656689999999 75
|
|
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=89.62 E-value=5.8 Score=34.69 Aligned_cols=95 Identities=17% Similarity=0.052 Sum_probs=54.0
Q ss_pred CCEEEEE--cCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCccEE
Q 042616 41 AQLIVMA--CSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGADFV 116 (220)
Q Consensus 41 a~~ILEI--Gtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D~V 116 (220)
+..+|-+ |+|++|..++.+|+++ +.+|++++.+ ++..+.+++. |...-+.....+..+.+... ...+|++
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~---G~~vi~~~~~-~~~~~~~~~~--g~~~~i~~~~~~~~~~v~~~~~~~~~d~v 216 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKAD---GIKVINIVRR-KEQVDLLKKI--GAEYVLNSSDPDFLEDLKELIAKLNATIF 216 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHc--CCcEEEECCCccHHHHHHHHhCCCCCcEE
Confidence 4445443 6677888888888875 6789999999 8888888763 32111222222333323222 2468977
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
| |+-- ... ....... +++ ||.++..
T Consensus 217 i-d~~g--~~~---~~~~~~~--l~~-~G~~v~~ 241 (324)
T cd08291 217 F-DAVG--GGL---TGQILLA--MPY-GSTLYVY 241 (324)
T ss_pred E-ECCC--cHH---HHHHHHh--hCC-CCEEEEE
Confidence 7 6543 221 2333444 544 6665554
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.59 E-value=4.6 Score=33.34 Aligned_cols=77 Identities=10% Similarity=0.171 Sum_probs=49.9
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhhc---CC
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMGD---YR 111 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~~---~~ 111 (220)
.+.||-+|+ +|..+..++..+...+.+|+.+..+ ++..+...+.+... .+++++.+|..+. +... .+
T Consensus 6 ~~~ilItGa--tg~iG~~la~~l~~~g~~V~~~~r~-~~~~~~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 6 GKVALITGG--SKGIGFAIAEALLAEGYKVAITARD-QKELEEAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCEEEEECC--CCcHHHHHHHHHHHCCCEEEEeeCC-HHHHHHHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 477888884 4666666666665557799999999 77766555555422 4688888775432 1111 24
Q ss_pred CccEEEEcCC
Q 042616 112 GADFVLIDCN 121 (220)
Q Consensus 112 ~~D~VfiD~~ 121 (220)
++|.||.-+.
T Consensus 82 ~~d~vi~~ag 91 (237)
T PRK07326 82 GLDVLIANAG 91 (237)
T ss_pred CCCEEEECCC
Confidence 7899986553
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=89.52 E-value=3.5 Score=36.96 Aligned_cols=96 Identities=20% Similarity=0.170 Sum_probs=55.2
Q ss_pred EEEEEcCCchHHH-HHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH-hc--ccCCc--EEEEEcchhhhhhhcCCCccEE
Q 042616 43 LIVMACSSIAVSR-TLALVAAARQTGGRVVCILSGVIGDIDASKKS-LG--RYANC--IEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 43 ~ILEIGtg~~G~s-Tl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~-l~--g~~~~--Ve~v~gda~~~L~~~~~~~D~V 116 (220)
+|+-+|+|+.|.. +..|+++ + +.+++... ++.++.-+++ +. ....+ ......+..+ ...++|+|
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~----g-~~V~~~~R-~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~----~~~~~Dlv 71 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKA----G-HDVTLLVR-SRRLEALKKKGLRIEDEGGNFTTPVVAATDAE----ALGPADLV 71 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhC----C-CeEEEEec-HHHHHHHHhCCeEEecCCCccccccccccChh----hcCCCCEE
Confidence 6888998766643 3334443 4 55665555 4556555553 11 11110 1111111111 13579999
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCE-EEEEecCC
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAG-VIVGYNAL 153 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Gg-viv~dNv~ 153 (220)
||.... -+..+.++.+.+. +.+ .+ +++..|=+
T Consensus 72 iv~vKa--~q~~~al~~l~~~--~~~-~t~vl~lqNG~ 104 (307)
T COG1893 72 IVTVKA--YQLEEALPSLAPL--LGP-NTVVLFLQNGL 104 (307)
T ss_pred EEEecc--ccHHHHHHHhhhc--CCC-CcEEEEEeCCC
Confidence 999988 7889999999998 765 55 44454444
|
|
| >PRK13869 plasmid-partitioning protein RepA; Provisional | Back alignment and domain information |
|---|
Probab=89.52 E-value=5.2 Score=37.19 Aligned_cols=37 Identities=14% Similarity=0.046 Sum_probs=27.2
Q ss_pred EEEEEcC--CchHHHHHH--HHHHcCCCCcEEEEEeCCchhH
Q 042616 43 LIVMACS--SIAVSRTLA--LVAAARQTGGRVVCILSGVIGD 80 (220)
Q Consensus 43 ~ILEIGt--g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~ 80 (220)
.|+-|.. ||+|-+|+. ||.++...|-+|..||.| |+.
T Consensus 122 ~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlD-pQ~ 162 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLD-PQA 162 (405)
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCC-CCC
Confidence 4555543 568888754 777776667899999999 874
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=89.51 E-value=5.3 Score=36.89 Aligned_cols=74 Identities=16% Similarity=0.118 Sum_probs=52.1
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh--hhhhc-CCCccEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK--LLMGD-YRGADFVL 117 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~--~L~~~-~~~~D~Vf 117 (220)
.++|+-+|+| ..+..+++.+...+-.|+.||.| ++..+..++.. ..+.++.||+.+ .|... ...+|.|+
T Consensus 231 ~~~iiIiG~G---~~g~~l~~~L~~~~~~v~vid~~-~~~~~~~~~~~----~~~~~i~gd~~~~~~L~~~~~~~a~~vi 302 (453)
T PRK09496 231 VKRVMIVGGG---NIGYYLAKLLEKEGYSVKLIERD-PERAEELAEEL----PNTLVLHGDGTDQELLEEEGIDEADAFI 302 (453)
T ss_pred CCEEEEECCC---HHHHHHHHHHHhCCCeEEEEECC-HHHHHHHHHHC----CCCeEEECCCCCHHHHHhcCCccCCEEE
Confidence 5889988865 44445666665557799999999 88887766653 346789999843 34332 36789998
Q ss_pred EcCCC
Q 042616 118 IDCNI 122 (220)
Q Consensus 118 iD~~k 122 (220)
+-.+.
T Consensus 303 ~~~~~ 307 (453)
T PRK09496 303 ALTND 307 (453)
T ss_pred ECCCC
Confidence 86654
|
|
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=89.41 E-value=10 Score=33.33 Aligned_cols=98 Identities=13% Similarity=0.080 Sum_probs=56.6
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
..+.+.||-.|+|++|..++.+|.+. +.+ |+.++.+ ++..+.+++. +....+.....+..+-+..+ ...+|
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~---G~~~v~~~~~~-~~~~~~~~~~--g~~~~v~~~~~~~~~~l~~~~~~~~~d 232 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKAS---GAYPVIVSDPN-EYRLELAKKM--GATYVVNPFKEDVVKEVADLTDGEGVD 232 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCcEEEEECCC-HHHHHHHHHh--CCcEEEcccccCHHHHHHHhcCCCCCC
Confidence 34567777678777898888888875 555 8888888 7777766553 22111222233443333222 25688
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
++|--... ...++.+.+. |++ +|.++.
T Consensus 233 ~vld~~g~-----~~~~~~~~~~--l~~-~g~~v~ 259 (340)
T TIGR00692 233 VFLEMSGA-----PKALEQGLQA--VTP-GGRVSL 259 (340)
T ss_pred EEEECCCC-----HHHHHHHHHh--hcC-CCEEEE
Confidence 88643232 1335555665 655 555544
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.35 E-value=8.5 Score=35.65 Aligned_cols=127 Identities=17% Similarity=0.074 Sum_probs=65.6
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+...|...+|-..++...++...+-.++| +....+.+...+.+ +.+|++..+.=.......+..+....-++..+..
T Consensus 55 ~R~~~p~~~~Le~~lA~l~g~~~~v~~~sG-~~Ai~~~l~all~p-GD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~ 132 (405)
T PRK08776 55 TRSGNPTRDLLGEALAELEGGAGGVITATG-MGAINLVLNALLQP-GDTLVVPHDAYGGSWRLFNALAKKGHFALITADL 132 (405)
T ss_pred cCCCChHHHHHHHHHHHHhCCCceEEEcCH-HHHHHHHHHHHhCC-CCEEEEccCCchHHHHHHHHHHHhcCcEEEEECC
Confidence 356777777888888887776655655643 33333323222344 7777775444122122223333321112333322
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+.....+||+..+... .+..++.+.+. ..|.+||+||+...
T Consensus 133 ~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~------~~gi~vIvD~a~a~ 186 (405)
T PRK08776 133 TDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAH------KVGALTVVDNTFLS 186 (405)
T ss_pred CCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHH------HcCCEEEEECCCcc
Confidence 444433332345789998765411 23333333333 24899999999854
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=89.31 E-value=3.9 Score=37.37 Aligned_cols=80 Identities=13% Similarity=0.072 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCch-------------------hHHHHHHHHhcccC--CcEEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVI-------------------GDIDASKKSLGRYA--NCIEFV 98 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~-------------------~~~~~Ar~~l~g~~--~~Ve~v 98 (220)
+..+||-+|+|+.|...+.....+. -|+++-+|.| . .+++.|++.++.+. -+|+.+
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~G--vg~i~lvD~D-~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~ 103 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAG--VGHITIIDDD-TVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS 103 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCC-EEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence 4477999999988887765333332 3899999988 4 45566667665222 235554
Q ss_pred Ecchhh-hhhhcCCCccEEEEcCCC
Q 042616 99 KGDAQK-LLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 99 ~gda~~-~L~~~~~~~D~VfiD~~k 122 (220)
...... -+..+...+|+|+.-.+.
T Consensus 104 ~~~i~~~~~~~~~~~~DvVvd~~d~ 128 (355)
T PRK05597 104 VRRLTWSNALDELRDADVILDGSDN 128 (355)
T ss_pred EeecCHHHHHHHHhCCCEEEECCCC
Confidence 443321 112234679977654444
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.14 E-value=1.2 Score=41.44 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHH
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKK 86 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~ 86 (220)
..++++.++.-.+.+.++|+|+| .||.+-.|+.. .+-.|++||.+ +...+.|++
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG-~G~LSr~lSl~---y~lsV~aIegs-q~~~~ra~r 194 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAG-QGHLSRFLSLG---YGLSVKAIEGS-QRLVERAQR 194 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCC-chHHHHHHhhc---cCceEEEeccc-hHHHHHHHH
Confidence 47889999999999999999996 99999988875 36699999999 877776664
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=89.10 E-value=5.4 Score=38.10 Aligned_cols=89 Identities=11% Similarity=0.076 Sum_probs=54.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
...+.|+-+|+|.+|-..+..+.+. |.+|+.+|.+ +.....|... |+ +++ +..+.+ ...|++|.
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~---Ga~VIV~e~d-p~r~~eA~~~--G~----~vv--~leEal----~~ADVVI~ 315 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAA---GARVIVTEID-PICALQALME--GY----QVL--TLEDVV----SEADIFVT 315 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCC-chhhHHHHhc--CC----eec--cHHHHH----hhCCEEEE
Confidence 3469999999988888777777654 6799999999 7765444332 32 111 334444 35799987
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.... ... +.+..... ++ +|++|+.-
T Consensus 316 tTGt--~~v--I~~e~L~~--MK-~GAiLiNv 340 (477)
T PLN02494 316 TTGN--KDI--IMVDHMRK--MK-NNAIVCNI 340 (477)
T ss_pred CCCC--ccc--hHHHHHhc--CC-CCCEEEEc
Confidence 4433 221 22444444 54 48877754
|
|
| >PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
Probab=89.08 E-value=3.8 Score=29.37 Aligned_cols=76 Identities=12% Similarity=0.061 Sum_probs=50.9
Q ss_pred EEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 70 VVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 70 V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
|.-||.+ +...+..++.++...-..-....+..+.+..+ ...+|+|++|......+..++++.+... - +...+|+
T Consensus 1 Ilivd~~-~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~--~-~~~~ii~ 76 (112)
T PF00072_consen 1 ILIVDDD-PEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQI--N-PSIPIIV 76 (112)
T ss_dssp EEEEESS-HHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHH--T-TTSEEEE
T ss_pred cEEEECC-HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccc--c-ccccEEE
Confidence 4567888 88888888888722111223556666665443 3679999999876446778899999887 2 4445544
Q ss_pred E
Q 042616 149 G 149 (220)
Q Consensus 149 ~ 149 (220)
.
T Consensus 77 ~ 77 (112)
T PF00072_consen 77 V 77 (112)
T ss_dssp E
T ss_pred e
Confidence 4
|
Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A .... |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.00 E-value=3 Score=34.79 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhhc---C
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMGD---Y 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~~---~ 110 (220)
..++||-.|. +|..+..++..+...+.+|+.++.+ ++..+.....++....+++++..|..+. +... .
T Consensus 3 ~~~~vlItG~--sg~iG~~la~~l~~~g~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 3 KGKVALVTGA--ASGIGLEIALALAKEGAKVVIADLN-DEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETF 79 (258)
T ss_pred CCCEEEEECC--CchHHHHHHHHHHHCCCeEEEEeCC-HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3478888883 5777788888776657899999999 8777665555543335688888775431 1111 3
Q ss_pred CCccEEEEcCC
Q 042616 111 RGADFVLIDCN 121 (220)
Q Consensus 111 ~~~D~VfiD~~ 121 (220)
+++|.|+.-+.
T Consensus 80 ~~~d~vi~~a~ 90 (258)
T PRK12429 80 GGVDILVNNAG 90 (258)
T ss_pred CCCCEEEECCC
Confidence 57899987654
|
|
| >cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase | Back alignment and domain information |
|---|
Probab=88.87 E-value=1.9 Score=36.89 Aligned_cols=37 Identities=19% Similarity=0.079 Sum_probs=28.0
Q ss_pred EEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhH
Q 042616 43 LIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGD 80 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~ 80 (220)
.|.-+|-||+|-+|+. ||.++...|-+|.-||.| |+.
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~D-pq~ 41 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCD-PKA 41 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcC-CCC
Confidence 4544566779988865 778887757789999999 874
|
Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia. |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.81 E-value=8 Score=31.87 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhh---cC
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMG---DY 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~---~~ 110 (220)
+.++||-+|+ +|..+..+++.+.+.+.+|+.+..+ ++..+...+.+... .+++++..|..+. +.. ..
T Consensus 4 ~~~~vlItGa--~g~iG~~~a~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGV--SEGLGYAVAYFALKEGAQVCINSRN-ENKLKRMKKTLSKY-GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECC--CchHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhc-CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4578998884 4666666666665557899999999 77665554433322 3578887775421 111 12
Q ss_pred CCccEEEEcCCC
Q 042616 111 RGADFVLIDCNI 122 (220)
Q Consensus 111 ~~~D~VfiD~~k 122 (220)
+.+|.++..+..
T Consensus 80 ~~id~ii~~ag~ 91 (238)
T PRK05786 80 NAIDGLVVTVGG 91 (238)
T ss_pred CCCCEEEEcCCC
Confidence 467988877653
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.79 E-value=2.2 Score=35.58 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=51.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh---------hhhcCCC
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL---------LMGDYRG 112 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~---------L~~~~~~ 112 (220)
+.+|-.|+ +|..+..|+..+.+.+.+|+.++.+ ++..+.....++....+++++.+|..+. +.....+
T Consensus 2 ~~vlItGa--~g~lG~~l~~~l~~~g~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 2 KTALVTGA--ASGIGLAIALALAAAGANVVVNDLG-EAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CEEEEcCC--cchHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 46787773 5777777777766557899999999 7776666555543335688888876432 1111356
Q ss_pred ccEEEEcCC
Q 042616 113 ADFVLIDCN 121 (220)
Q Consensus 113 ~D~VfiD~~ 121 (220)
+|.||..+.
T Consensus 79 ~d~vi~~a~ 87 (255)
T TIGR01963 79 LDILVNNAG 87 (255)
T ss_pred CCEEEECCC
Confidence 899986653
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.73 E-value=3.1 Score=34.56 Aligned_cols=79 Identities=10% Similarity=0.138 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhh---cC
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMG---DY 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~---~~ 110 (220)
+.+.+|-+|+ +|..+..|++.+.+.+.+|+.+..+ ++..+.....++....+++++..|..+. +.. ..
T Consensus 6 ~~~~vlVtG~--sg~iG~~l~~~L~~~G~~Vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK07666 6 QGKNALITGA--GRGIGRAVAIALAKEGVNVGLLART-EENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNEL 82 (239)
T ss_pred CCCEEEEEcC--CchHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4577888884 5777777777765558899999999 7766555444443335688888875321 111 12
Q ss_pred CCccEEEEcCC
Q 042616 111 RGADFVLIDCN 121 (220)
Q Consensus 111 ~~~D~VfiD~~ 121 (220)
+++|.||.-+.
T Consensus 83 ~~id~vi~~ag 93 (239)
T PRK07666 83 GSIDILINNAG 93 (239)
T ss_pred CCccEEEEcCc
Confidence 57899987654
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=88.71 E-value=10 Score=32.94 Aligned_cols=96 Identities=16% Similarity=0.084 Sum_probs=54.6
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
..+.+.||-.|+|++|..++.+|++. +.+|+.+..+ ++..+.+++ + +. +. ++...-.+......+.+|.+|
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~---G~~v~~~~~~-~~~~~~~~~-~-g~-~~--~~~~~~~~~~~~~~~~~d~vi 230 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAM---GFETVAITRS-PDKRELARK-L-GA-DE--VVDSGAELDEQAAAGGADVIL 230 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHH-h-CC-cE--EeccCCcchHHhccCCCCEEE
Confidence 34567888889877888888888764 5689999999 777777644 2 21 11 111111111111124699876
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|+-. .....+.+.+. +++.|.++.+
T Consensus 231 -~~~~----~~~~~~~~~~~--l~~~G~~i~~ 255 (330)
T cd08245 231 -VTVV----SGAAAEAALGG--LRRGGRIVLV 255 (330)
T ss_pred -ECCC----cHHHHHHHHHh--cccCCEEEEE
Confidence 6532 12345555666 6554444444
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=88.67 E-value=3.6 Score=36.76 Aligned_cols=87 Identities=11% Similarity=-0.019 Sum_probs=52.3
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCch------------------hHHHHHHHHhc--ccCCcEEEEEcch
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVI------------------GDIDASKKSLG--RYANCIEFVKGDA 102 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~------------------~~~~~Ar~~l~--g~~~~Ve~v~gda 102 (220)
+||-+|+|+.|...+.....+. -|+++-+|.|.- .+++.|.+.++ .-.-+|+.+.++.
T Consensus 1 kVlVVGaGGlG~eilknLal~G--vg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i 78 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSG--FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKI 78 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcC--CCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEeccc
Confidence 4788999989988876443332 388988887721 13345555554 2223466677666
Q ss_pred hhhhhhcCCCccEEEEcCCCCCccHHHHHHH
Q 042616 103 QKLLMGDYRGADFVLIDCNIDIDGHKNVFRA 133 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~ 133 (220)
.+.-......||+|+.-.+. -.-..++..
T Consensus 79 ~~~~~~f~~~fdvVi~alDn--~~aR~~in~ 107 (291)
T cd01488 79 QDKDEEFYRQFNIIICGLDS--IEARRWING 107 (291)
T ss_pred CchhHHHhcCCCEEEECCCC--HHHHHHHHH
Confidence 55433445789998865444 333344444
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=88.65 E-value=2.3 Score=35.29 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hhhc-------C
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LMGD-------Y 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~-------~ 110 (220)
..++||-+|+ +|..+.+|+..+.+.+.+|+.+..+ ++..+.....+.....+++++.+|..+. +... .
T Consensus 5 ~~~~ilItGa--sg~iG~~l~~~l~~~g~~V~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 5 EGRVALVTGA--ARGIGRAIAVRLAADGAEVIVVDIC-GDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCCEEEEcCC--CCcHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4577888883 5677777777666557799999999 7766655555542224588888876432 1111 2
Q ss_pred CCccEEEEcCCC
Q 042616 111 RGADFVLIDCNI 122 (220)
Q Consensus 111 ~~~D~VfiD~~k 122 (220)
+++|.||.-+..
T Consensus 82 ~~~d~vi~~ag~ 93 (251)
T PRK12826 82 GRLDILVANAGI 93 (251)
T ss_pred CCCCEEEECCCC
Confidence 478998876633
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.64 E-value=1.5 Score=38.30 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=56.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---------c-cC--------CcEEEEEcchh
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---------R-YA--------NCIEFVKGDAQ 103 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---------g-~~--------~~Ve~v~gda~ 103 (220)
++|--||+|..|.. +|..+...+-+|+.+|++ ++.++.+++.++ + +. .++.+ ..|..
T Consensus 4 ~kI~VIG~G~mG~~---ia~~la~~g~~V~~~d~~-~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~ 78 (282)
T PRK05808 4 QKIGVIGAGTMGNG---IAQVCAVAGYDVVMVDIS-DAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD 78 (282)
T ss_pred cEEEEEccCHHHHH---HHHHHHHCCCceEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH
Confidence 46777887655543 333333335689999999 998876654332 1 10 12332 22322
Q ss_pred hhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 104 KLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+ + ...|+||+-.+.+...-.++++.+.+. +. ++.+|+. |+.
T Consensus 79 ~-~----~~aDlVi~av~e~~~~k~~~~~~l~~~--~~-~~~il~s-~ts 119 (282)
T PRK05808 79 D-L----KDADLVIEAATENMDLKKKIFAQLDEI--AK-PEAILAT-NTS 119 (282)
T ss_pred H-h----ccCCeeeecccccHHHHHHHHHHHHhh--CC-CCcEEEE-CCC
Confidence 2 2 467999998765112225889999887 64 4777644 443
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=88.63 E-value=13 Score=33.46 Aligned_cols=102 Identities=9% Similarity=0.018 Sum_probs=62.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHH-HHHHHhc--ccCCcEEEEE-cchhhhhhhcCCCccEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDID-ASKKSLG--RYANCIEFVK-GDAQKLLMGDYRGADFV 116 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~-~Ar~~l~--g~~~~Ve~v~-gda~~~L~~~~~~~D~V 116 (220)
..+|.-||+|.+|++...++. .......++=+|++ ++.++ .+...-. .+.....+.. +|..+ + ...|+|
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~-~~~~~~el~LiD~~-~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~----~~adiv 75 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISIL-AKGLADELVLVDVV-EDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-T----ANSKVV 75 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCC-ccHHHHHHHHHHHhhccCCCCEEEECCCHHH-h----CCCCEE
Confidence 357888999999987666543 44446789999999 55443 3333322 2222235554 66655 3 467999
Q ss_pred EEcCCCCC--------------ccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 117 LIDCNIDI--------------DGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 117 fiD~~k~~--------------~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
++-+...+ .-+.++.+.+.+. .|++-+|++-|-
T Consensus 76 vitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~---~p~~~vivvsNP 122 (312)
T cd05293 76 IVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY---SPNAILLVVSNP 122 (312)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEccCh
Confidence 99554311 1145566667776 376777777664
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=88.63 E-value=6.7 Score=34.85 Aligned_cols=95 Identities=7% Similarity=-0.034 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
..++++-||.|.+|...+..+.++ +.+|+.++.+ ++..+.++.. +. +++. ..+ +++....+|+||.-
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~---Ga~V~v~~r~-~~~~~~~~~~--G~----~~~~--~~~-l~~~l~~aDiVI~t 217 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL---GANVTVGARK-SAHLARITEM--GL----SPFH--LSE-LAEEVGKIDIIFNT 217 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC---CCEEEEEECC-HHHHHHHHHc--CC----eeec--HHH-HHHHhCCCCEEEEC
Confidence 478999999987777766666553 6799999999 7766555432 22 1211 111 22323579999986
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
.+. .. .-+..... ++| |+ +++|-+..+|
T Consensus 218 ~p~--~~---i~~~~l~~--~~~-g~-vIIDla~~pg 245 (296)
T PRK08306 218 IPA--LV---LTKEVLSK--MPP-EA-LIIDLASKPG 245 (296)
T ss_pred CCh--hh---hhHHHHHc--CCC-Cc-EEEEEccCCC
Confidence 543 21 22334444 443 55 4555444444
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=88.63 E-value=9 Score=34.97 Aligned_cols=124 Identities=19% Similarity=0.180 Sum_probs=66.2
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCch-hHHHHHHHHhcccCCcEEEEEc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVI-GDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~-~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
+...|...+|-..++...+++.++-..+| +....+.|...+.+ +.+|++-... - .........+....-.+.++..
T Consensus 50 r~~~p~~~~le~~la~l~g~~~~~~~~sG-~~Ai~~al~al~~~-Gd~Vl~~~~~-~~~t~~~~~~~~~~~g~~v~~v~~ 126 (380)
T TIGR01325 50 RYANPTVAAFEERIAALEGAERAVATATG-MSAIQAALMTLLQA-GDHVVASRSL-FGSTVGFISEILPRFGIEVSFVDP 126 (380)
T ss_pred cCCCchHHHHHHHHHHHhCCCcEEEECCH-HHHHHHHHHHHhCC-CCEEEEecCC-cchHHHHHHHHHHHhCCEEEEECC
Confidence 45678888898999988887777655432 33333333222344 7788775433 2 1222222233311123555433
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|..++...+.....+|++..+... .+..++.+.+. ..|..+++||+..
T Consensus 127 ~d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~------~~gi~livD~a~~ 179 (380)
T TIGR01325 127 TDLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAH------AIGALLVVDNVFA 179 (380)
T ss_pred CCHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHH------HcCCEEEEECCCc
Confidence 333433222345789998766411 12233333333 2489999999974
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.62 E-value=6.4 Score=37.05 Aligned_cols=115 Identities=13% Similarity=0.170 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
..++|+-+|+|.+|...+..+++. +.+|+.+|.+ +.+...|... |. ++. +..+.+ ...|+||.-
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~---Ga~ViV~d~d-p~ra~~A~~~--G~----~v~--~l~eal----~~aDVVI~a 274 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL---GARVIVTEVD-PICALQAAMD--GF----RVM--TMEEAA----ELGDIFVTA 274 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEcCC-chhhHHHHhc--CC----Eec--CHHHHH----hCCCEEEEC
Confidence 678999999988887777666654 6799999999 8765444331 32 211 334443 368988654
Q ss_pred CCCCCccHHHHHH-HHHhhcCCCCCCEEEEEecCCCCC-----------Ccc----ceEEEeeecCCcEEEEEEe
Q 042616 120 CNIDIDGHKNVFR-AAKESVMHGSGAGVIVGYNALPKG-----------SWR----GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 120 ~~k~~~~y~~~l~-~l~~~~~L~~~Ggviv~dNv~~~g-----------~~~----~~~s~~lPig~Gl~v~~~~ 178 (220)
... .+.++ ..... ++ +|++++.-..+... .+. .+....+|-|..+.|.--+
T Consensus 275 TG~-----~~vI~~~~~~~--mK-~GailiNvG~~d~Eid~~~L~~~~~~~~~v~~~v~~y~~~~g~~i~lLa~G 341 (425)
T PRK05476 275 TGN-----KDVITAEHMEA--MK-DGAILANIGHFDNEIDVAALEELAVKWREIKPQVDEYTLPDGKRIILLAEG 341 (425)
T ss_pred CCC-----HHHHHHHHHhc--CC-CCCEEEEcCCCCCccChHHHhhcCcceeecCCCceEEEeCCCCEEEEEeCC
Confidence 332 23444 34443 44 47777654332211 111 4555667777766555443
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=88.59 E-value=2.3 Score=35.48 Aligned_cols=80 Identities=21% Similarity=0.221 Sum_probs=47.8
Q ss_pred CCEEEEEcCCchHHHHHH--HHHHcCCCCcE--EEEEeCCchhHHHHHHHHhcccCCcEEEEEc----chhh----hhhh
Q 042616 41 AQLIVMACSSIAVSRTLA--LVAAARQTGGR--VVCILSGVIGDIDASKKSLGRYANCIEFVKG----DAQK----LLMG 108 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~--LA~A~~~~~gr--V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g----da~~----~L~~ 108 (220)
|+.|+=+|..|+|-+|.. ||..+...+.+ ++|.|.......+..+.+.+-+ +|.+... |..+ .+..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l--~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEIL--GVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHH--TEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHh--ccccchhhcchhhHHHHHHHHHH
Confidence 456777886558887764 55554433444 5888887566777777777633 2555442 2323 2322
Q ss_pred c-CCCccEEEEcCCC
Q 042616 109 D-YRGADFVLIDCNI 122 (220)
Q Consensus 109 ~-~~~~D~VfiD~~k 122 (220)
. .+.+|+||||..-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 2 2579999999876
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.59 E-value=3 Score=39.15 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=55.2
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHH-HHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDI-DASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCN 121 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~-~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~ 121 (220)
+|.-|| | +|..+.+||.++...+-+|+.++.+ ++.. +.+++ + + ++ ...+..+.+ ...|+||+-.+
T Consensus 2 kI~IIG-G-~G~mG~slA~~L~~~G~~V~v~~r~-~~~~~~~a~~-~-g----v~-~~~~~~e~~----~~aDvVIlavp 67 (437)
T PRK08655 2 KISIIG-G-TGGLGKWFARFLKEKGFEVIVTGRD-PKKGKEVAKE-L-G----VE-YANDNIDAA----KDADIVIISVP 67 (437)
T ss_pred EEEEEe-c-CCHHHHHHHHHHHHCCCEEEEEECC-hHHHHHHHHH-c-C----Ce-eccCHHHHh----ccCCEEEEecC
Confidence 577787 2 3455556666665546689999999 7664 33322 1 2 22 223333433 45799999888
Q ss_pred CCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 122 IDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 122 k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
. ....++++.+.+. +.+ |. +|+|-.
T Consensus 68 ~--~~~~~vl~~l~~~--l~~-~~-iViDvs 92 (437)
T PRK08655 68 I--NVTEDVIKEVAPH--VKE-GS-LLMDVT 92 (437)
T ss_pred H--HHHHHHHHHHHhh--CCC-CC-EEEEcc
Confidence 7 6677888888887 643 55 555544
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.56 E-value=2.2 Score=37.33 Aligned_cols=96 Identities=13% Similarity=0.158 Sum_probs=54.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-----ccC-------------CcEEEEEcchh
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-----RYA-------------NCIEFVKGDAQ 103 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-----g~~-------------~~Ve~v~gda~ 103 (220)
++|.-||+|..|.. +|..+...+-+|+.+|.+ ++.++.+.+.+. +.. .++++ ..+..
T Consensus 2 ~~V~VIG~G~mG~~---iA~~la~~G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~ 76 (288)
T PRK09260 2 EKLVVVGAGVMGRG---IAYVFAVSGFQTTLVDIK-QEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLK 76 (288)
T ss_pred cEEEEECccHHHHH---HHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHH
Confidence 46888887544443 343333336689999999 999888776542 110 11222 22333
Q ss_pred hhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 104 KLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+.+ ...|+||.--+.+...-..++..+.+. +. ++.+|+.
T Consensus 77 ~~~----~~aD~Vi~avpe~~~~k~~~~~~l~~~--~~-~~~il~~ 115 (288)
T PRK09260 77 AAV----ADADLVIEAVPEKLELKKAVFETADAH--AP-AECYIAT 115 (288)
T ss_pred Hhh----cCCCEEEEeccCCHHHHHHHHHHHHhh--CC-CCcEEEE
Confidence 333 457999976655111124667777776 54 4665544
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=88.55 E-value=6.2 Score=35.10 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=58.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh---hhhhhc--CCCc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ---KLLMGD--YRGA 113 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~---~~L~~~--~~~~ 113 (220)
+.++||-.|+|++|..++.+|+++ +. +|+.++.+ ++..+.+++ + |....+.....+.. ..+..+ ...+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~---G~~~v~~~~~~-~~~~~~~~~-~-g~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLA---GARRVIVIDGS-PERLELARE-F-GADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCC-HHHHHHHHH-c-CCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 567888889888999999999875 44 89999998 887777754 2 32111211111111 112122 2469
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
|++| |+-- . ...++...+. +++ +|.++.-.
T Consensus 251 d~vi-d~~g--~--~~~~~~~~~~--l~~-~G~~v~~g 280 (361)
T cd08231 251 DVVI-EASG--H--PAAVPEGLEL--LRR-GGTYVLVG 280 (361)
T ss_pred cEEE-ECCC--C--hHHHHHHHHH--hcc-CCEEEEEc
Confidence 9776 4432 1 2345566666 655 66666543
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.53 E-value=8.4 Score=35.23 Aligned_cols=128 Identities=9% Similarity=0.062 Sum_probs=66.3
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc-
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG- 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g- 100 (220)
+.-.|...+|-..+++..+.+..+-+++| +....+.+...+.+ +.+|++-++.-.......+.......-.+.++..
T Consensus 57 r~~~pt~~~Le~~lA~l~G~~~al~~~sG-~~Ai~~~l~al~~~-Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~ 134 (386)
T PRK06767 57 RLGNPTVKLFEERMAVLEGGEEALAFGSG-MAAISATLIGFLKA-GDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDME 134 (386)
T ss_pred CCCCcchHHHHHHHHHHhCCCcEEEECCH-HHHHHHHHHHHhCC-CCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCC
Confidence 44568888888888888887777767754 33333333222343 7788876653112222222222211112333322
Q ss_pred chhhhhhhcCCCccEEEEcCCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDI-DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|..++...+.+..++|++..+... ....+ ++.+.+. .+..|..+++||++.
T Consensus 135 d~~~l~~~i~~~tklV~lesp~NptG~v~d-l~~I~~l--a~~~g~~vivD~a~a 186 (386)
T PRK06767 135 TEADIENKIRPNTKLIFVETPINPTMKLID-LKQVIRV--AKRNGLLVIVDNTFC 186 (386)
T ss_pred CHHHHHHhhCcCceEEEEeCCCCCCceecC-HHHHHHH--HHHcCCEEEEECCCc
Confidence 344433332345789998876511 11111 2333332 223489999999974
|
|
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=88.53 E-value=10 Score=32.77 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=53.8
Q ss_pred HhhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCC
Q 042616 36 AAGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRG 112 (220)
Q Consensus 36 a~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~ 112 (220)
+...+.+.||-.|+ |++|..++.+|++. |.+++.+..+ ++..+.+++ + +...-+.....+..+.+..+ ..+
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~---G~~v~~~~~~-~~~~~~~~~-~-g~~~~~~~~~~~~~~~i~~~~~~~~ 208 (324)
T cd08292 135 LGVKPGQWLIQNAAGGAVGKLVAMLAAAR---GINVINLVRR-DAGVAELRA-L-GIGPVVSTEQPGWQDKVREAAGGAP 208 (324)
T ss_pred hCCCCCCEEEEcccccHHHHHHHHHHHHC---CCeEEEEecC-HHHHHHHHh-c-CCCEEEcCCCchHHHHHHHHhCCCC
Confidence 34456678887764 56888888888875 5678777666 555555554 2 33111111111222222222 246
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|++| |+-- .. .+..+.+. |++ +|.++.
T Consensus 209 ~d~v~-d~~g--~~---~~~~~~~~--l~~-~g~~v~ 236 (324)
T cd08292 209 ISVAL-DSVG--GK---LAGELLSL--LGE-GGTLVS 236 (324)
T ss_pred CcEEE-ECCC--Ch---hHHHHHHh--hcC-CcEEEE
Confidence 99887 6644 22 23455555 655 555443
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=88.51 E-value=7.3 Score=35.90 Aligned_cols=123 Identities=16% Similarity=0.141 Sum_probs=67.7
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhH-HHHHHHHhcccCCcEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGD-IDASKKSLGRYANCIEFV 98 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~-~~~Ar~~l~g~~~~Ve~v 98 (220)
+.-.|...+|-..+|+..+.+..+-+++ |.+++. +...+.+ |.+|++.++. -.. ....+..+....-.+.++
T Consensus 61 r~~~p~~~~Le~~lA~l~G~~~~~~~~s---G~~Ai~~~l~~~l~~-Gd~Vl~~~~~-y~~~~~~~~~~~~~~G~~v~~v 135 (398)
T PRK07504 61 RYSNPTVDMFEKRMCALEGAEDARATAS---GMAAVTAAILCQVKA-GDHVVAARAL-FGSCRYVVETLLPRYGIESTLV 135 (398)
T ss_pred cCCCchHHHHHHHHHHHhCCCeeeEecC---HHHHHHHHHHHHhCC-CCEEEEcCCc-hhHHHHHHHHHHhhcCeEEEEE
Confidence 4457888899999999888776664543 444443 3223444 7888887654 222 222222222111123443
Q ss_pred E-cchhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 99 K-GDAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 99 ~-gda~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
. -|..++...+.+..++|++..+... .+..++.+.+.+ .|.++|+||+...
T Consensus 136 d~~d~e~l~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~~------~gi~lvvD~a~a~ 191 (398)
T PRK07504 136 DGLDLDNWEKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQ------AGAKLVVDNVFAT 191 (398)
T ss_pred CCCCHHHHHHhcCcCceEEEEECCCCCCcEecCHHHHHHHHHH------cCCEEEEECCccc
Confidence 3 2334433333356789998776521 123333333332 4899999999753
|
|
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.48 E-value=5.9 Score=34.99 Aligned_cols=94 Identities=21% Similarity=0.205 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEc---chhhhhhhc-CCCcc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKG---DAQKLLMGD-YRGAD 114 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g---da~~~L~~~-~~~~D 114 (220)
+.+.||-.|+|++|..++.+|++. +. +|++++.+ ++..+.+++ + |. + .++.. +..+.+... .+.+|
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~---G~~~v~~~~~~-~~~~~~~~~-~-g~-~--~~~~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKAL---GPANIIVVDID-EAKLEAAKA-A-GA-D--VVVNGSDPDAAKRIIKAAGGGVD 245 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc---CCCeEEEEeCC-HHHHHHHHH-h-CC-c--EEecCCCccHHHHHHHHhCCCCc
Confidence 467888888888898888888875 44 78999998 888877754 3 22 1 22221 222222222 23689
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++| |+.- . ...++.+.+. |.+ +|.++.-
T Consensus 246 ~vi-d~~g--~--~~~~~~~~~~--l~~-~g~~v~~ 273 (350)
T cd08240 246 AVI-DFVN--N--SATASLAFDI--LAK-GGKLVLV 273 (350)
T ss_pred EEE-ECCC--C--HHHHHHHHHH--hhc-CCeEEEE
Confidence 887 6543 1 2345666666 655 5665543
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=88.44 E-value=0.97 Score=36.18 Aligned_cols=66 Identities=20% Similarity=0.101 Sum_probs=39.9
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcC-CCccEEEEcCCC
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDY-RGADFVLIDCNI 122 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~-~~~D~VfiD~~k 122 (220)
||+|-||+. ||.++.+.|-+|.-||.| ++.....+. +.+. . ......+.+..+. ..||+|++|++.
T Consensus 9 gG~GKTt~a~~LA~~la~~g~~vllvD~D-~q~~~~~~~-~~~~--~---~~~~l~~~~~~~~~~~yD~VIiD~pp 77 (169)
T cd02037 9 GGVGKSTVAVNLALALAKLGYKVGLLDAD-IYGPSIPKM-WRGP--M---KMGAIKQFLTDVDWGELDYLVIDMPP 77 (169)
T ss_pred CcCChhHHHHHHHHHHHHcCCcEEEEeCC-CCCCCchHH-HhCc--c---hHHHHHHHHHHhhcCCCCEEEEeCCC
Confidence 457777754 777776667899999999 776432221 1110 0 1111223333322 689999999998
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=88.38 E-value=21 Score=33.40 Aligned_cols=123 Identities=15% Similarity=0.073 Sum_probs=70.1
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHH--HHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALV--AAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA--~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~ 99 (220)
+.-.|.+.+|=..+|...+++..+-.. +|..++.++ ..+.+ +.+|++....=..........+....-.+.++.
T Consensus 60 R~~~p~~~~le~~lA~l~g~~~av~~s---SGt~Al~~al~~ll~~-Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd 135 (433)
T PRK08134 60 RISNPTVAVLEERVAALEGGVGAIATA---SGQAALHLAIATLMGA-GSHIVASSALYGGSHNLLHYTLRRFGIETTFVK 135 (433)
T ss_pred cCcChHHHHHHHHHHHHhCCCcEEEeC---CHHHHHHHHHHHHhCC-CCEEEEeCCccHHHHHHHHHHHhhCCeEEEEEC
Confidence 456788999999999988887765443 455555432 22444 788988877512233333333332212345543
Q ss_pred c-chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 100 G-DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 100 g-da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
- |..++-..+..+-.+|++-..... .+..++.+.+.+ .|..+++||+..
T Consensus 136 ~~d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~------~gi~livD~t~a 189 (433)
T PRK08134 136 PGDIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHE------AGVPLLVDSTFT 189 (433)
T ss_pred CCCHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHH------cCCEEEEECCCc
Confidence 2 344433333456788888765411 233334444433 488999999974
|
|
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.38 E-value=4.9 Score=35.09 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=57.7
Q ss_pred hhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 37 AGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 37 ~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
...+...||-.|+ |.+|..++.+|.+. +.+++++..+ ++..+.+++..... +... +..+.+..+ +.+|+
T Consensus 159 ~~~~~~~vlI~g~~g~~g~~~~~la~~~---g~~vi~~~~~-~~~~~~~~~~~~~~---~~~~--~~~~~v~~~-~~~d~ 228 (334)
T PRK13771 159 GVKKGETVLVTGAGGGVGIHAIQVAKAL---GAKVIAVTSS-ESKAKIVSKYADYV---IVGS--KFSEEVKKI-GGADI 228 (334)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHHHHHh---cCch--hHHHHHHhc-CCCcE
Confidence 3345678888887 67899988888875 6789999999 88888876641111 1111 222323333 46898
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+| |+-. . ..++.+.+. |++ +|.++.
T Consensus 229 ~l-d~~g--~---~~~~~~~~~--l~~-~G~~v~ 253 (334)
T PRK13771 229 VI-ETVG--T---PTLEESLRS--LNM-GGKIIQ 253 (334)
T ss_pred EE-EcCC--h---HHHHHHHHH--Hhc-CCEEEE
Confidence 87 6654 2 235566666 655 555443
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=88.37 E-value=22 Score=33.37 Aligned_cols=125 Identities=16% Similarity=0.106 Sum_probs=70.4
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHH-HHHHHHhcccCCcEEEEE-
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDI-DASKKSLGRYANCIEFVK- 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~-~~Ar~~l~g~~~~Ve~v~- 99 (220)
+...|.+.+|=..++...+++..+-..+| +....+.+...+++ |.+|++.... -... ....+.+....-.+.++.
T Consensus 65 r~~~pt~~~le~~la~l~g~~~~v~fsSG-~~Ai~~al~~ll~~-Gd~VI~~~~~-y~~t~~~~~~~l~~~Gi~v~~vd~ 141 (437)
T PRK05613 65 RLTNPTVEALENRIASLEGGVHAVAFASG-QAAETAAILNLAGA-GDHIVTSPRL-YGGTETLFLVTLNRLGIEVTFVEN 141 (437)
T ss_pred CccChHHHHHHHHHHHHhCCCeEEEeCCH-HHHHHHHHHHhcCC-CCEEEECCCc-cHHHHHHHHHHHHhcCeEEEEECC
Confidence 56778888888888888888777766654 44433334333444 8889887544 2222 223333332212355553
Q ss_pred -cchhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 100 -GDAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 100 -gda~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
.|..++...+.....+|++...... .+...+-+.+. ..|.++++||+...
T Consensus 142 ~~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~------~~gi~livD~t~a~ 196 (437)
T PRK05613 142 PDDPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAH------RNQVPLIVDNTIAT 196 (437)
T ss_pred CCCHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHH------HcCCeEEEECCCcc
Confidence 2344443333455788887655411 13333333333 34899999999754
|
|
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=88.35 E-value=9.8 Score=32.90 Aligned_cols=94 Identities=12% Similarity=-0.048 Sum_probs=55.1
Q ss_pred CCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEE
Q 042616 41 AQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLI 118 (220)
Q Consensus 41 a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~Vfi 118 (220)
.++||-+|+ |++|..++.+|++. +.+|+++..+ ++..+.+++ + |. +.+--......+.+..+ ...+|.+|
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~---g~~v~~~~~~-~~~~~~~~~-~-g~-~~v~~~~~~~~~~~~~~~~~~~d~vl- 218 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKL---GYEVVASTGK-ADAADYLKK-L-GA-KEVIPREELQEESIKPLEKQRWAGAV- 218 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC---CCeEEEEecC-HHHHHHHHH-c-CC-CEEEcchhHHHHHHHhhccCCcCEEE-
Confidence 468888886 67888877788765 5689999999 887777754 2 22 11111111111222121 24689765
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+-. . ..++..... +++ +|.++.-
T Consensus 219 d~~g--~---~~~~~~~~~--l~~-~G~~i~~ 242 (326)
T cd08289 219 DPVG--G---KTLAYLLST--LQY-GGSVAVS 242 (326)
T ss_pred ECCc--H---HHHHHHHHH--hhc-CCEEEEE
Confidence 7754 2 245566666 655 5555544
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=88.30 E-value=6 Score=36.54 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=49.4
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh--hhhhc-CCCccEEEEc
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK--LLMGD-YRGADFVLID 119 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~--~L~~~-~~~~D~VfiD 119 (220)
+|+-+|+ |..+..++..+...+-.|+.||.+ ++.++.+++. ..++++.||+.+ .+... ...+|.+++-
T Consensus 2 ~viIiG~---G~ig~~~a~~L~~~g~~v~vid~~-~~~~~~~~~~-----~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 2 KIIIVGA---GQVGYTLAENLSGENNDVTVIDTD-EERLRRLQDR-----LDVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred EEEEECC---CHHHHHHHHHHHhCCCcEEEEECC-HHHHHHHHhh-----cCEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 5777875 555556666666557789999999 8887766653 247788888753 34443 3679999987
Q ss_pred CCC
Q 042616 120 CNI 122 (220)
Q Consensus 120 ~~k 122 (220)
.+.
T Consensus 73 ~~~ 75 (453)
T PRK09496 73 TDS 75 (453)
T ss_pred cCC
Confidence 655
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=88.27 E-value=2.1 Score=37.58 Aligned_cols=78 Identities=10% Similarity=0.065 Sum_probs=50.5
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh--hhhcCCCccEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL--LMGDYRGADFV 116 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~--L~~~~~~~D~V 116 (220)
.++||-+| + +|+.+.+|+..+...+.+|+.+..+ +...+.....+. +...+++++.+|..+. +......+|.|
T Consensus 5 ~k~vlVtG-~-~G~IG~~l~~~L~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 5 GKVVCVTG-A-SGYIASWIVKLLLFRGYTINATVRD-PKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCEEEEEC-C-chHHHHHHHHHHHHCCCEEEEEEcC-CcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 57889888 3 6888888888776657788877777 554433332222 2235689999887542 32333468988
Q ss_pred EEcCC
Q 042616 117 LIDCN 121 (220)
Q Consensus 117 fiD~~ 121 (220)
|--+.
T Consensus 82 ih~A~ 86 (325)
T PLN02989 82 FHTAS 86 (325)
T ss_pred EEeCC
Confidence 86554
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=88.26 E-value=2.8 Score=36.57 Aligned_cols=90 Identities=13% Similarity=0.035 Sum_probs=55.0
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
+|.-||+|..| ..||.++.+.+-+|+.+|++ ++.++.+.+. +. +.....+. +. ....|+||+-.+.
T Consensus 2 ~I~IIG~G~mG---~sla~~L~~~g~~V~~~d~~-~~~~~~a~~~--g~---~~~~~~~~-~~----~~~aDlVilavp~ 67 (279)
T PRK07417 2 KIGIVGLGLIG---GSLGLDLRSLGHTVYGVSRR-ESTCERAIER--GL---VDEASTDL-SL----LKDCDLVILALPI 67 (279)
T ss_pred eEEEEeecHHH---HHHHHHHHHCCCEEEEEECC-HHHHHHHHHC--CC---cccccCCH-hH----hcCCCEEEEcCCH
Confidence 46667865443 34444444435689999999 8877766542 21 22111222 22 2467999999887
Q ss_pred CCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 123 DIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 123 ~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
....++++.+.+. +.+ + .+|.|-.
T Consensus 68 --~~~~~~~~~l~~~--l~~-~-~ii~d~~ 91 (279)
T PRK07417 68 --GLLLPPSEQLIPA--LPP-E-AIVTDVG 91 (279)
T ss_pred --HHHHHHHHHHHHh--CCC-C-cEEEeCc
Confidence 6677888888887 533 4 5566643
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.25 E-value=2.7 Score=35.19 Aligned_cols=80 Identities=10% Similarity=0.065 Sum_probs=50.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhccc-CCcEEEEEcchh--------h---hh
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRY-ANCIEFVKGDAQ--------K---LL 106 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~-~~~Ve~v~gda~--------~---~L 106 (220)
.+.+.+|-+|+ +|..+..+++.+.+.+.+|+.++.+ ++..+...+.++.. ..++.++..|.. + .+
T Consensus 10 ~~~k~vlItG~--~g~iG~~la~~l~~~G~~Vi~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 10 LKDRIILVTGA--GDGIGREAALTYARHGATVILLGRT-EEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred cCCCEEEEeCC--CchHHHHHHHHHHHCCCcEEEEeCC-HHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHH
Confidence 46678898884 5666666666665557799999999 77665555555421 245677766653 1 11
Q ss_pred hhcCCCccEEEEcCC
Q 042616 107 MGDYRGADFVLIDCN 121 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~ 121 (220)
....+++|.|+.-+.
T Consensus 87 ~~~~~~id~vi~~Ag 101 (247)
T PRK08945 87 EEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHhCCCCEEEECCc
Confidence 111357899987653
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.15 E-value=4.2 Score=33.76 Aligned_cols=79 Identities=9% Similarity=0.023 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhhc---C
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMGD---Y 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~~---~ 110 (220)
+.+.+|-+|+ +|..+..+++.+.+.+.+|+.++.+ ++..+...+.++....++.++.+|..+. +... .
T Consensus 5 ~~k~vlItG~--sg~iG~~la~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGA--SSGIGKATALAFAKAGWDLALVARS-QDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCC--CchHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3467888884 4666666666665557899999999 7666555544443335688888876432 1111 2
Q ss_pred CCccEEEEcCC
Q 042616 111 RGADFVLIDCN 121 (220)
Q Consensus 111 ~~~D~VfiD~~ 121 (220)
+++|.++..+.
T Consensus 82 ~~id~lv~~ag 92 (241)
T PRK07454 82 GCPDVLINNAG 92 (241)
T ss_pred CCCCEEEECCC
Confidence 56899987664
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=88.14 E-value=4.1 Score=37.09 Aligned_cols=134 Identities=17% Similarity=0.219 Sum_probs=68.7
Q ss_pred CCCEEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHH---HHHHHhcccCCcEEEEE----cchhhh----h
Q 042616 40 NAQLIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGDID---ASKKSLGRYANCIEFVK----GDAQKL----L 106 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~---~Ar~~l~g~~~~Ve~v~----gda~~~----L 106 (220)
++..|+-+|..|+|=+|.. ||..+.+.+.+|.-+..| .-+.. ..+.+...+ .+.++. +|+... +
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D-t~R~~a~eqL~~~a~~l--gv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD-TFRAGAIEQLEEHAERL--GVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC-cCcHHHHHHHHHHHHHc--CCceecccCCCCHHHHHHHHH
Confidence 4677888887569999854 665565545677666666 44333 223332211 122222 232222 2
Q ss_pred hhc-CCCccEEEEcCCCCCccHHHH---HHHHHhhcCCCCCCEEEEEecCCCCCCcc---ceEEEeeecCCcEEEEEEee
Q 042616 107 MGD-YRGADFVLIDCNIDIDGHKNV---FRAAKESVMHGSGAGVIVGYNALPKGSWR---GYKTHFLPIGEGLLVTRIGE 179 (220)
Q Consensus 107 ~~~-~~~~D~VfiD~~k~~~~y~~~---l~~l~~~~~L~~~Ggviv~dNv~~~g~~~---~~~s~~lPig~Gl~v~~~~~ 179 (220)
... ...+|+|+||...+...-.+. ++.+.+. +.|...++|.|-........ .|.. .+++ +|+.++..-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~--~~pd~~iLVl~a~~g~d~~~~a~~f~~-~~~~-~giIlTKlD~ 291 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRV--TKPDLVIFVGDALAGNDAVEQAREFNE-AVGI-DGVILTKVDA 291 (336)
T ss_pred HHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHh--hCCceEEEeeccccchhHHHHHHHHHh-cCCC-CEEEEeeecC
Confidence 111 356899999998732222333 4444444 55655555555332221121 2322 2333 7787777765
Q ss_pred c
Q 042616 180 N 180 (220)
Q Consensus 180 ~ 180 (220)
+
T Consensus 292 ~ 292 (336)
T PRK14974 292 D 292 (336)
T ss_pred C
Confidence 4
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.13 E-value=4.3 Score=33.95 Aligned_cols=79 Identities=9% Similarity=0.143 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhh---cC
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMG---DY 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~---~~ 110 (220)
..++||-+|. +|..+..++..+.+.+.+|+.+..+ ++.++.....+.....++.++..|..+. +.. ..
T Consensus 8 ~~k~ilItGa--sg~IG~~~a~~l~~~G~~Vi~~~r~-~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 8 EGKVALVTGA--SSGLGARFAQVLAQAGAKVVLASRR-VERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCEEEEECC--CcHHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 4588888884 5666667666666557799999999 8877666666553334677888776421 111 13
Q ss_pred CCccEEEEcCC
Q 042616 111 RGADFVLIDCN 121 (220)
Q Consensus 111 ~~~D~VfiD~~ 121 (220)
+++|.++..+.
T Consensus 85 ~~~d~li~~ag 95 (258)
T PRK06949 85 GTIDILVNNSG 95 (258)
T ss_pred CCCCEEEECCC
Confidence 46898887654
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=88.13 E-value=11 Score=35.15 Aligned_cols=126 Identities=16% Similarity=0.088 Sum_probs=67.7
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKG 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~g 100 (220)
+.-.|...+|=..++...+.+.++-..+| +....+.+...+.+ +.+|++.++.=+.........+. ...-.+.++..
T Consensus 72 r~~~Pt~~~LE~~lA~l~g~~~~l~~~sG-~~Ai~~al~al~~~-GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~ 149 (418)
T PLN02242 72 RHFNPTVLNLGRQMAALEGTEAAYCTASG-MSAISSVLLQLCSS-GGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDI 149 (418)
T ss_pred CCCChhHHHHHHHHHHHhCCCeEEEEccH-HHHHHHHHHHHhCC-CCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCC
Confidence 45678899999999998888888744422 33333333323444 77887665541112222222221 12123443333
Q ss_pred -chhhhhhhcCC-CccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 -DAQKLLMGDYR-GADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 -da~~~L~~~~~-~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+.. ...+|++..+... .+..++.+.+. ..|..|++||+...
T Consensus 150 ~d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~------~~gi~livDea~~~ 204 (418)
T PLN02242 150 TDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAH------EKGVTVVVDNTFAP 204 (418)
T ss_pred CCHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHH------HhCCEEEEECCCCc
Confidence 44444333333 4789999876511 12233333333 34899999999854
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.07 E-value=5.9 Score=35.30 Aligned_cols=119 Identities=9% Similarity=0.067 Sum_probs=74.6
Q ss_pred hHHHHHHHHhc--CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHH
Q 042616 9 ATKAYLQALKM--GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKK 86 (220)
Q Consensus 9 a~~aY~~~l~~--~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~ 86 (220)
+.+.|.+-... ...-..| +-.++..|-..-+...|-|+||| -+ -||..- --+|+|.|.- +
T Consensus 148 afdlYH~gfr~QV~kWP~nP-ld~ii~~ik~r~~~~vIaD~GCG-Ea----kiA~~~---~~kV~SfDL~-a-------- 209 (325)
T KOG3045|consen 148 AFDLYHAGFRSQVKKWPENP-LDVIIRKIKRRPKNIVIADFGCG-EA----KIASSE---RHKVHSFDLV-A-------- 209 (325)
T ss_pred HHHHHHHHHHHHHHhCCCCh-HHHHHHHHHhCcCceEEEecccc-hh----hhhhcc---ccceeeeeee-c--------
Confidence 45556555322 2344444 56777777666667778999986 33 344433 3489999887 1
Q ss_pred HhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 87 SLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 87 ~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
+ +-+++.-|..+ +|--.++.|+++.--..=..++.+.+..+.+. |++ ||.+-+-.|-++
T Consensus 210 ----~--~~~V~~cDm~~-vPl~d~svDvaV~CLSLMgtn~~df~kEa~Ri--Lk~-gG~l~IAEv~SR 268 (325)
T KOG3045|consen 210 ----V--NERVIACDMRN-VPLEDESVDVAVFCLSLMGTNLADFIKEANRI--LKP-GGLLYIAEVKSR 268 (325)
T ss_pred ----C--CCceeeccccC-CcCccCcccEEEeeHhhhcccHHHHHHHHHHH--hcc-CceEEEEehhhh
Confidence 1 22334445444 44335789998765443235788899999998 876 777766667654
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=88.05 E-value=7.5 Score=31.70 Aligned_cols=73 Identities=18% Similarity=0.119 Sum_probs=42.7
Q ss_pred EEEEEcCCchHHHHHH-HHHHcCCCCcEEEEEeCCch------------------hHHHHHHHHhccc--CCcEEEEEcc
Q 042616 43 LIVMACSSIAVSRTLA-LVAAARQTGGRVVCILSGVI------------------GDIDASKKSLGRY--ANCIEFVKGD 101 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~-LA~A~~~~~grV~tIE~d~~------------------~~~~~Ar~~l~g~--~~~Ve~v~gd 101 (220)
+|+-+|+|+.|...+. |+.+ . -++++-+|.| . .+.+.+++.++.+ .-+++.+...
T Consensus 1 ~VlViG~GglGs~ia~~La~~-G--vg~i~lvD~D-~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~ 76 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-G--VGNLKLVDFD-VVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIK 76 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-C--CCeEEEEeCC-EEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEee
Confidence 4788999878876554 4442 2 3789999998 4 3455566666522 2235555444
Q ss_pred hhh-hhhhcCCCccEEEEc
Q 042616 102 AQK-LLMGDYRGADFVLID 119 (220)
Q Consensus 102 a~~-~L~~~~~~~D~VfiD 119 (220)
..+ .++.+...+|+|+.-
T Consensus 77 ~~~~~~~~~l~~~DlVi~~ 95 (174)
T cd01487 77 IDENNLEGLFGDCDIVVEA 95 (174)
T ss_pred cChhhHHHHhcCCCEEEEC
Confidence 322 222334679977644
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=88.01 E-value=10 Score=35.42 Aligned_cols=124 Identities=11% Similarity=0.116 Sum_probs=67.2
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchh-HHHHHHHHhcccCCcEEEEEc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIG-DIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~-~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
+.-.|...+|-..+++..+.+..+-.++| +....+.|...+.+ +.+|++.+.. -. ........+....-.+.++..
T Consensus 59 r~~~p~~~~le~~lA~l~g~~~al~~~SG-~~Ai~~al~all~p-Gd~VIv~~~~-y~~t~~~~~~~~~~~G~~v~~vd~ 135 (427)
T PRK05994 59 RITNPTNAVLEERVAALEGGTAALAVASG-HAAQFLVFHTLLQP-GDEFIAARKL-YGGSINQFGHAFKSFGWQVRWADA 135 (427)
T ss_pred CCCCccHHHHHHHHHHHhCCCcEEEEcCH-HHHHHHHHHHHhCC-CCEEEEecCc-chhHHHHHHHHHHhcCcEEEEECC
Confidence 45567788888888888888777766543 33333333333444 7888876655 22 112222222211123444432
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|..++...+.....+|++...... .+..++.+.+. ..|.++++||+..
T Consensus 136 ~d~~~l~~ai~~~tklV~vesp~NptG~v~dl~~I~~la~------~~gi~livD~a~a 188 (427)
T PRK05994 136 DDPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAH------RAGLPLIVDNTLA 188 (427)
T ss_pred CCHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHH------HcCCEEEEECCcc
Confidence 334433333345789999654311 13333333333 3489999999975
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.92 E-value=1.3 Score=40.81 Aligned_cols=92 Identities=18% Similarity=0.159 Sum_probs=62.5
Q ss_pred HHHHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCC--CcEEEEEeCCchhHHHHHHHHhccc-CCcEEEEEcchhh
Q 042616 29 GEFISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQT--GGRVVCILSGVIGDIDASKKSLGRY-ANCIEFVKGDAQK 104 (220)
Q Consensus 29 ~~~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~--~grV~tIE~d~~~~~~~Ar~~l~g~-~~~Ve~v~gda~~ 104 (220)
+.+|--|+- ..+..+|||.++ +.|.-|+.|.+|+..- .|.|+|=|.| +.++..-+..++-+ +.++.+...++..
T Consensus 143 vSmlPvL~L~v~p~~~VLDmCA-APG~Kt~qLLeal~~~~~~g~vvaND~d-~~R~~~L~~q~~~l~~~~~~v~~~~~~~ 220 (375)
T KOG2198|consen 143 VSMLPVLALGVKPGDKVLDMCA-APGGKTAQLLEALHKDPTRGYVVANDVD-PKRLNMLVHQLKRLPSPNLLVTNHDASL 220 (375)
T ss_pred hhccchhhcccCCCCeeeeecc-CCCccHHHHHHHHhcCCCCCeeEecccC-HHHHHHHHHHHhccCCcceeeeccccee
Confidence 334433333 466799999998 6999999999999842 5799999999 99988877766522 2344555544432
Q ss_pred hh--------hhcCCCccEEEEcCCC
Q 042616 105 LL--------MGDYRGADFVLIDCNI 122 (220)
Q Consensus 105 ~L--------~~~~~~~D~VfiD~~k 122 (220)
+- +.-...||-|++|.+=
T Consensus 221 ~p~~~~~~~~~~~~~~fDrVLvDVPC 246 (375)
T KOG2198|consen 221 FPNIYLKDGNDKEQLKFDRVLVDVPC 246 (375)
T ss_pred ccccccccCchhhhhhcceeEEeccc
Confidence 11 1112479999999654
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.79 E-value=4.2 Score=33.72 Aligned_cols=79 Identities=10% Similarity=0.109 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh------hhhhc---C
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK------LLMGD---Y 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~------~L~~~---~ 110 (220)
+.+.+|-+|+ +|..+..+++.+...+.+|+.++.+ +...+.+.+.+.....++.++..|..+ .+... .
T Consensus 4 ~~~~~lItG~--~g~iG~~~a~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGG--AQGLGRAMAEYLAQKGAKLALIDLN-QEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECC--CchHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4578888884 3555555665555557899999999 776666655554333467777777432 12111 2
Q ss_pred CCccEEEEcCC
Q 042616 111 RGADFVLIDCN 121 (220)
Q Consensus 111 ~~~D~VfiD~~ 121 (220)
+++|.||.-+.
T Consensus 81 ~~id~vi~~ag 91 (253)
T PRK08217 81 GQLNGLINNAG 91 (253)
T ss_pred CCCCEEEECCC
Confidence 56899986543
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.63 E-value=7 Score=36.46 Aligned_cols=97 Identities=14% Similarity=0.033 Sum_probs=53.6
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCch---------------------hHHHHHHHHhcccCCc
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVI---------------------GDIDASKKSLGRYANC 94 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~---------------------~~~~~Ar~~l~g~~~~ 94 (220)
-+..+..+|+-+||||+|...+.+...++ -++++-||.|.- .+++.+++.+......
T Consensus 171 q~kL~~~~VaIVG~GG~GS~Va~~LAR~G--VgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~ 248 (393)
T PRK06153 171 SAKLEGQRIAIIGLGGTGSYILDLVAKTP--VREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRG 248 (393)
T ss_pred HHHHhhCcEEEEcCCccHHHHHHHHHHcC--CCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCe
Confidence 34446678999999999987775443333 489999888711 2334444444322123
Q ss_pred EEEEEcchh-hhhhhcCCCccEEEEcCCCCCccHHHH-HHHHHhh
Q 042616 95 IEFVKGDAQ-KLLMGDYRGADFVLIDCNIDIDGHKNV-FRAAKES 137 (220)
Q Consensus 95 Ve~v~gda~-~~L~~~~~~~D~VfiD~~k~~~~y~~~-l~~l~~~ 137 (220)
|+.+..... +.+.. ...+|+||.-.+. .....+ .+.+.+.
T Consensus 249 I~~~~~~I~~~n~~~-L~~~DiV~dcvDn--~~aR~~ln~~a~~~ 290 (393)
T PRK06153 249 IVPHPEYIDEDNVDE-LDGFTFVFVCVDK--GSSRKLIVDYLEAL 290 (393)
T ss_pred EEEEeecCCHHHHHH-hcCCCEEEEcCCC--HHHHHHHHHHHHHc
Confidence 443332221 11222 3679999876665 444333 3444444
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.63 E-value=4.1 Score=34.90 Aligned_cols=80 Identities=13% Similarity=0.131 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hhhc-------C
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LMGD-------Y 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~-------~ 110 (220)
+.+++|-.|. +|..+..|++.+...+.+|+.++.+ ++.++...+.+.....++.++.+|..+. +..+ .
T Consensus 5 ~~k~vlVtGa--sggIG~~la~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 5 AGKVAVITGA--ASGFGLAFARIGAALGMKLVLADVQ-QDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCCEEEEeCC--ccHHHHHHHHHHHHCCCEEEEEeCC-hHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4578898883 4666667776666557899999998 7766555444432224678888886431 2111 2
Q ss_pred CCccEEEEcCCC
Q 042616 111 RGADFVLIDCNI 122 (220)
Q Consensus 111 ~~~D~VfiD~~k 122 (220)
+++|+||.-+..
T Consensus 82 g~id~vi~~Ag~ 93 (287)
T PRK06194 82 GAVHLLFNNAGV 93 (287)
T ss_pred CCCCEEEECCCC
Confidence 468999877654
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=87.61 E-value=5.4 Score=38.03 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=57.0
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCC--CcEEEEEeCCchhHHHHHHHHhc-----ccC-------C-cEEEEEcchhhhhh
Q 042616 43 LIVMACSSIAVSRTLALVAAARQT--GGRVVCILSGVIGDIDASKKSLG-----RYA-------N-CIEFVKGDAQKLLM 107 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~--~grV~tIE~d~~~~~~~Ar~~l~-----g~~-------~-~Ve~v~gda~~~L~ 107 (220)
+|.-||+|.+|. .+|.++... +-+|+++|.| ++.++..++... ++. . +.. ...|..+.+
T Consensus 3 ~I~ViG~GyvGl---~~A~~lA~~g~g~~V~gvD~~-~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~-~t~~~~~~i- 76 (473)
T PLN02353 3 KICCIGAGYVGG---PTMAVIALKCPDIEVVVVDIS-VPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLF-FSTDVEKHV- 76 (473)
T ss_pred EEEEECCCHHHH---HHHHHHHhcCCCCeEEEEECC-HHHHHHHHcCCCccCCCCHHHHHHHhhcCCEE-EEcCHHHHH-
Confidence 577788654444 444333332 3579999999 888877554321 111 0 111 122222222
Q ss_pred hcCCCccEEEEcC--CCC--------Ccc---HHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 108 GDYRGADFVLIDC--NID--------IDG---HKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 108 ~~~~~~D~VfiD~--~k~--------~~~---y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
...|++||-- +.+ ..+ .....+.+.+. |+ +|.+||...+.+.|
T Consensus 77 ---~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~--l~-~~~lVv~~STvp~G 132 (473)
T PLN02353 77 ---AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADV--SK-SDKIVVEKSTVPVK 132 (473)
T ss_pred ---hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhh--CC-CCcEEEEeCCCCCC
Confidence 3568888732 220 012 25566677777 65 58888888887777
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.61 E-value=10 Score=34.05 Aligned_cols=101 Identities=21% Similarity=0.150 Sum_probs=58.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH-hc---c-cCCcEEEEE-cchhhhhhhcCCCc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKS-LG---R-YANCIEFVK-GDAQKLLMGDYRGA 113 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~-l~---g-~~~~Ve~v~-gda~~~L~~~~~~~ 113 (220)
+..+|.-||+|..|++...++ +.... ..++=+|++ ++.++ +... +. . ......+.. +|.. .+ ...
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l-~~~~~-~~l~L~Di~-~~~~~-g~~lDl~~~~~~~~~~~~i~~~~d~~-~l----~~A 74 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLI-LQKNL-GDVVLYDVI-KGVPQ-GKALDLKHFSTLVGSNINILGTNNYE-DI----KDS 74 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHH-HHCCC-CeEEEEECC-Cccch-hHHHHHhhhccccCCCeEEEeCCCHH-Hh----CCC
Confidence 456899999987788755444 33322 579999999 65543 3222 11 1 112244443 4533 33 457
Q ss_pred cEEEEcCCCCCc--------------cHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 114 DFVLIDCNIDID--------------GHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 114 D~VfiD~~k~~~--------------~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+|++-+..... -..++.+.+.+. .|++-+|++-|.
T Consensus 75 DiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~---~p~a~vivvsNP 124 (319)
T PTZ00117 75 DVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY---CPNAFVICVTNP 124 (319)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCeEEEEecCh
Confidence 999998844111 134677777776 264547777664
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.57 E-value=1.3 Score=39.07 Aligned_cols=55 Identities=9% Similarity=0.187 Sum_probs=41.7
Q ss_pred HHHHHHHHhh--CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc
Q 042616 29 GEFISALAAG--NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG 89 (220)
Q Consensus 29 ~~~L~~La~~--~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~ 89 (220)
-+|+..++.. .....|||--+| +|.++++. ...+.+.+++|.+ ++.++.|++.++
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~G-SGTT~~AA----~~lgR~~IG~Ei~-~~Y~~~a~~Rl~ 251 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAG-SFTTGAVA----KASGRKFIGIEIN-SEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCC-CcHHHHHH----HHcCCCEEEEeCC-HHHHHHHHHHHH
Confidence 5667766664 568999998765 78665522 2247799999999 999999999985
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=87.51 E-value=6 Score=34.33 Aligned_cols=97 Identities=15% Similarity=0.056 Sum_probs=55.9
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhccc---CCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRY---ANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~---~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+|.-||+|..|.. +|..+.+.+-.|+.++.+ ++.++..++. ++ ........ ...+-... ..++|+||+-
T Consensus 2 ~I~IiG~G~~G~~---~a~~L~~~g~~V~~~~r~-~~~~~~~~~~--g~~~~~~~~~~~~-~~~~~~~~-~~~~d~vila 73 (304)
T PRK06522 2 KIAILGAGAIGGL---FGAALAQAGHDVTLVARR-GAHLDALNEN--GLRLEDGEITVPV-LAADDPAE-LGPQDLVILA 73 (304)
T ss_pred EEEEECCCHHHHH---HHHHHHhCCCeEEEEECC-hHHHHHHHHc--CCcccCCceeecc-cCCCChhH-cCCCCEEEEe
Confidence 5788998766643 233332335689999998 7776655542 22 11111000 00111112 2679999999
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCE-EEEEecC
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAG-VIVGYNA 152 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Gg-viv~dNv 152 (220)
.+. .....+++.+.+. +.+ +. +|..-|-
T Consensus 74 ~k~--~~~~~~~~~l~~~--l~~-~~~iv~~~nG 102 (304)
T PRK06522 74 VKA--YQLPAALPSLAPL--LGP-DTPVLFLQNG 102 (304)
T ss_pred ccc--ccHHHHHHHHhhh--cCC-CCEEEEecCC
Confidence 887 7778889999987 654 54 4444443
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=87.48 E-value=3.5 Score=37.60 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=37.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG 89 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~ 89 (220)
.+.+.|--+|.|+.|..++-+|.|+ +-||+.|+.. ...-+.|-+.+.
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAM---G~rV~vis~~-~~kkeea~~~LG 226 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAM---GMRVTVISTS-SKKKEEAIKSLG 226 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHh---CcEEEEEeCC-chhHHHHHHhcC
Confidence 3567777778877999999999997 6799999999 656665655554
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=87.46 E-value=2.2 Score=37.36 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=50.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh--hhhcCCCccEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL--LMGDYRGADFV 116 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~--L~~~~~~~D~V 116 (220)
.++||-.| + +|+.+.+++..+.+.+-+|+++..+ ....+.....+. +...+++++.+|..+. +......+|.|
T Consensus 5 ~~~vlVTG-a-tG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 81 (322)
T PLN02986 5 GKLVCVTG-A-SGYIASWIVKLLLLRGYTVKATVRD-LTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAV 81 (322)
T ss_pred CCEEEEEC-C-CcHHHHHHHHHHHHCCCEEEEEECC-CcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEE
Confidence 46899888 3 7888888888776656788877777 554443333322 2335789999987542 32333468988
Q ss_pred EEcCC
Q 042616 117 LIDCN 121 (220)
Q Consensus 117 fiD~~ 121 (220)
|--+.
T Consensus 82 ih~A~ 86 (322)
T PLN02986 82 FHTAS 86 (322)
T ss_pred EEeCC
Confidence 85553
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=87.41 E-value=16 Score=32.19 Aligned_cols=100 Identities=20% Similarity=0.125 Sum_probs=56.0
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHH-HHHHhcc---cCCcEEEEE-cchhhhhhhcCCCccEE
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDA-SKKSLGR---YANCIEFVK-GDAQKLLMGDYRGADFV 116 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~-Ar~~l~g---~~~~Ve~v~-gda~~~L~~~~~~~D~V 116 (220)
.+|.-||+|..|+....++.. ...+ .|+-+|.+ ++.++. +...... ......+.. +|..+ + ...|+|
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-~~~~-ev~L~D~~-~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~----~~aDiV 74 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-KELG-DVVLFDIV-EGVPQGKALDIAEAAPVEGFDTKITGTNDYED-I----AGSDVV 74 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCe-EEEEEECC-CchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-H----CCCCEE
Confidence 478889998778775554432 2213 89999999 665532 2211121 111234432 44432 3 457999
Q ss_pred EEcCCCCC--------------ccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 117 LIDCNIDI--------------DGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 117 fiD~~k~~--------------~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+-..... ..+.++++.+.+. . |++-+|++-|.
T Consensus 75 ii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~--~-~~~~viv~tNP 121 (307)
T PRK06223 75 VITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKY--A-PDAIVIVVTNP 121 (307)
T ss_pred EECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH--C-CCeEEEEecCc
Confidence 98764311 1245667777776 3 64556777664
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=87.32 E-value=17 Score=32.43 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=58.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHH-HHHHHHhcccCCcEEEEE-cchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDI-DASKKSLGRYANCIEFVK-GDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~-~~Ar~~l~g~~~~Ve~v~-gda~~~L~~~~~~~D~V 116 (220)
...++|+-+|+|..|...+..+.. ....+|+-++++ +++. +.|++ +. . ..+. .+..+. ....|+|
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~--~g~~~V~v~~r~-~~ra~~la~~-~g---~--~~~~~~~~~~~----l~~aDvV 242 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAA--KGVAEITIANRT-YERAEELAKE-LG---G--NAVPLDELLEL----LNEADVV 242 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHH--cCCCEEEEEeCC-HHHHHHHHHH-cC---C--eEEeHHHHHHH----HhcCCEE
Confidence 467999999987666655544433 113578889999 7765 33443 22 1 2222 222232 2458999
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|.-... ..+.+.++.+... . +.++.+++|-..++
T Consensus 243 i~at~~--~~~~~~~~~~~~~--~-~~~~~~viDlavPr 276 (311)
T cd05213 243 ISATGA--PHYAKIVERAMKK--R-SGKPRLIVDLAVPR 276 (311)
T ss_pred EECCCC--CchHHHHHHHHhh--C-CCCCeEEEEeCCCC
Confidence 987776 5554445555443 2 23678888866654
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.31 E-value=14 Score=33.75 Aligned_cols=101 Identities=4% Similarity=0.022 Sum_probs=62.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHH-HHHHHhc--ccCCcEEEEE-cchhhhhhhcCCCccEEE
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDID-ASKKSLG--RYANCIEFVK-GDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~-~Ar~~l~--g~~~~Ve~v~-gda~~~L~~~~~~~D~Vf 117 (220)
.+|.-||+|.+|++.++++. .......++-+|.+ ++.++ .+..... .+...+.+.. +|..+ + ...|+|+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~-~~~l~~el~LiDi~-~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~----~daDiVV 110 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTIL-TQDLADELALVDVN-PDKLRGEMLDLQHAAAFLPRTKILASTDYAV-T----AGSDLCI 110 (350)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCC-CchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-h----CCCCEEE
Confidence 68999999988987776554 44446789999999 65443 3333333 2223355554 45433 3 4679999
Q ss_pred EcCCCCC--------------ccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 118 IDCNIDI--------------DGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 118 iD~~k~~--------------~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+-+...+ .-+.++.+.+.+. .|++-+|++-|-
T Consensus 111 itAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~---~p~~ivivvtNP 156 (350)
T PLN02602 111 VTAGARQIPGESRLNLLQRNVALFRKIIPELAKY---SPDTILLIVSNP 156 (350)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH---CCCeEEEEecCc
Confidence 9876521 1123555566665 376666777664
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=87.29 E-value=2.9 Score=36.66 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=55.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---------cc-C--------CcEEEEEcchh
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---------RY-A--------NCIEFVKGDAQ 103 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---------g~-~--------~~Ve~v~gda~ 103 (220)
++|--||+|..|. .+|..+...+-+|+.+|++ ++.++.+++.++ +. . .++. ...+.
T Consensus 5 ~~V~vIG~G~mG~---~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~- 78 (295)
T PLN02545 5 KKVGVVGAGQMGS---GIAQLAAAAGMDVWLLDSD-PAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL- 78 (295)
T ss_pred CEEEEECCCHHHH---HHHHHHHhcCCeEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH-
Confidence 5687788754443 3333333336689999999 988877665432 11 0 0111 12222
Q ss_pred hhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 104 KLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+.+ ...|+||.-..-+...-..+|..+... +. ++.+|+.
T Consensus 79 ~~~----~~aD~Vieav~e~~~~k~~v~~~l~~~--~~-~~~il~s 117 (295)
T PLN02545 79 EEL----RDADFIIEAIVESEDLKKKLFSELDRI--CK-PSAILAS 117 (295)
T ss_pred HHh----CCCCEEEEcCccCHHHHHHHHHHHHhh--CC-CCcEEEE
Confidence 222 457999987764224456778888876 54 4766654
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.29 E-value=4.2 Score=34.03 Aligned_cols=77 Identities=12% Similarity=0.077 Sum_probs=49.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hhhc-CCCccEEEE
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LMGD-YRGADFVLI 118 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~-~~~~D~Vfi 118 (220)
++||-.|+ +|..+..++..+.+.+.+|+++..+ +...+..+........+++++.+|..+. +... ...+|.||.
T Consensus 3 ~~vlVtGa--sg~iG~~ia~~l~~~G~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGA--GSGFGREVALRLARKGHNVIAGVQI-APQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCC--CCHHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 56888884 4666666666665557899999998 7665555544432223578888876442 2121 347999998
Q ss_pred cCC
Q 042616 119 DCN 121 (220)
Q Consensus 119 D~~ 121 (220)
.+.
T Consensus 80 ~ag 82 (257)
T PRK09291 80 NAG 82 (257)
T ss_pred CCC
Confidence 765
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.25 E-value=4.2 Score=34.69 Aligned_cols=78 Identities=8% Similarity=0.045 Sum_probs=50.5
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhh-----hh---cC
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLL-----MG---DY 110 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L-----~~---~~ 110 (220)
.+.+|-+|+ +|..+..++..+..-+-+|+++..+ ++..+.....+. +...+++++..|..+.- .. ..
T Consensus 3 ~k~~lItGa--sg~iG~~la~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 79 (280)
T PRK06914 3 KKIAIVTGA--SSGFGLLTTLELAKKGYLVIATMRN-PEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEI 79 (280)
T ss_pred CCEEEEECC--CchHHHHHHHHHHhCCCEEEEEeCC-HHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhc
Confidence 467888884 5666667666655547799999998 776655544443 33357888888764421 11 13
Q ss_pred CCccEEEEcCC
Q 042616 111 RGADFVLIDCN 121 (220)
Q Consensus 111 ~~~D~VfiD~~ 121 (220)
+++|.|+..+.
T Consensus 80 ~~id~vv~~ag 90 (280)
T PRK06914 80 GRIDLLVNNAG 90 (280)
T ss_pred CCeeEEEECCc
Confidence 57899987764
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=87.25 E-value=9.5 Score=35.72 Aligned_cols=88 Identities=11% Similarity=0.100 Sum_probs=53.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
...++|+-+|+|.+|...+.++++. +.+|+.+|.| |.....|+.. |. ++. +..+.+ ...|++|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~---Ga~ViV~d~d-p~r~~~A~~~--G~----~v~--~leeal----~~aDVVIt 256 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM---GARVIVTEVD-PIRALEAAMD--GF----RVM--TMEEAA----KIGDIFIT 256 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC---cCEEEEEeCC-hhhHHHHHhc--CC----EeC--CHHHHH----hcCCEEEE
Confidence 4578999999887887777666654 7799999999 8765444431 32 221 233433 35698865
Q ss_pred cCCCCCccHHHHHHH-HHhhcCCCCCCEEEEEe
Q 042616 119 DCNIDIDGHKNVFRA-AKESVMHGSGAGVIVGY 150 (220)
Q Consensus 119 D~~k~~~~y~~~l~~-l~~~~~L~~~Ggviv~d 150 (220)
+.- ....++. .... ++ +|++|+.-
T Consensus 257 -aTG----~~~vI~~~~~~~--mK-~GailiN~ 281 (406)
T TIGR00936 257 -ATG----NKDVIRGEHFEN--MK-DGAIVANI 281 (406)
T ss_pred -CCC----CHHHHHHHHHhc--CC-CCcEEEEE
Confidence 332 2344443 4444 44 58877753
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.23 E-value=7.5 Score=33.84 Aligned_cols=99 Identities=13% Similarity=0.006 Sum_probs=53.4
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH-hc--ccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKS-LG--RYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~-l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+|+-||+|..|..-.+ .+.+.+-.|+.++.. +..+..++. +. .......+ .............++|+||+-
T Consensus 2 kI~IiG~G~iG~~~a~---~L~~~g~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vila 75 (305)
T PRK12921 2 RIAVVGAGAVGGTFGG---RLLEAGRDVTFLVRP--KRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTGPFDLVILA 75 (305)
T ss_pred eEEEECCCHHHHHHHH---HHHHCCCceEEEecH--HHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccCCCCEEEEE
Confidence 5788898766654333 222224568888873 444444432 21 11111111 110111011112679999999
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCEEEE-EecC
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIV-GYNA 152 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Ggviv-~dNv 152 (220)
.+. .....+++.+.+. +.+ +.+|+ .-|-
T Consensus 76 vk~--~~~~~~~~~l~~~--~~~-~~~ii~~~nG 104 (305)
T PRK12921 76 VKA--YQLDAAIPDLKPL--VGE-DTVIIPLQNG 104 (305)
T ss_pred ecc--cCHHHHHHHHHhh--cCC-CCEEEEeeCC
Confidence 887 7788899999887 654 66555 4343
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.18 E-value=6.1 Score=34.59 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=58.6
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----------cc---------CCcEEEEEcch
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----------RY---------ANCIEFVKGDA 102 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----------g~---------~~~Ve~v~gda 102 (220)
++|.-||+|..|.. + |..+...+-+|+.+|.+ ++.++.+++.++ .+ ..++++ ..|.
T Consensus 4 ~kIaViGaG~mG~~-i--A~~la~~G~~V~l~d~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~ 78 (287)
T PRK08293 4 KNVTVAGAGVLGSQ-I--AFQTAFHGFDVTIYDIS-DEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDL 78 (287)
T ss_pred cEEEEECCCHHHHH-H--HHHHHhcCCeEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCH
Confidence 57888897655543 2 33322336689999999 998888876542 01 012332 3344
Q ss_pred hhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 103 QKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+.+ ...|+|+.-.+-+...-..+++.+.+. + +++. |++.|..
T Consensus 79 ~~a~----~~aDlVieavpe~~~~k~~~~~~l~~~--~-~~~~-ii~sntS 121 (287)
T PRK08293 79 AEAV----KDADLVIEAVPEDPEIKGDFYEELAKV--A-PEKT-IFATNSS 121 (287)
T ss_pred HHHh----cCCCEEEEeccCCHHHHHHHHHHHHhh--C-CCCC-EEEECcc
Confidence 4433 457999987764112346778888887 5 4355 4555554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 220 | |||
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 3e-06 |
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-06
Identities = 35/191 (18%), Positives = 58/191 (30%), Gaps = 65/191 (34%)
Query: 26 PDVGEFISALAAGNNAQLIV-----MACSSIAVSRTLALVAAARQTGGRVVCILSGVIGD 80
G + LA QL+V + C+S +R ++ RVV I D
Sbjct: 42 RQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAIS-------ISSRVVMI------D 88
Query: 81 IDASKKSLGR-------YANCIEFVKGDAQKLL--MGDYRGADFVLIDCNIDIDGHKNVF 131
D R + +E GD + D D + +DC D+ +V
Sbjct: 89 PDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDI---DILFMDC--DVFNGADVL 143
Query: 132 RAAKESVMHGSGAGVIVGYNALPKGSWRG--------------------------YKTHF 165
+ +++ NAL RG + T
Sbjct: 144 ERMNRCLAKN---ALLIAVNAL----RRGSVAESHEDPETAALREFNHHLSRRRDFFTTI 196
Query: 166 LPIGEGLLVTR 176
+P+G G+L+
Sbjct: 197 VPVGNGVLLGY 207
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 220 | |||
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.96 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.96 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.95 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.95 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.93 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.93 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.93 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.93 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.93 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.93 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.93 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.92 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.9 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.88 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 99.87 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 99.78 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.66 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.61 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.56 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.55 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.54 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.53 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.52 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.51 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.49 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.49 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.48 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.48 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.46 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.45 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.45 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.44 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.44 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.44 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.43 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.42 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.42 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.42 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.4 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.4 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.39 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.39 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.38 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.38 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.38 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.38 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.38 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.38 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.36 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.36 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.36 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.36 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.36 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.36 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.35 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.35 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.35 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.35 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.34 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.34 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.34 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.33 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.33 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.32 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.32 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.32 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 99.32 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.32 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.31 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.31 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.31 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.31 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.31 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.3 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.3 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.3 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.3 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.3 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.3 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.29 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.29 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.29 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.28 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.28 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.28 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.28 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.28 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.27 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.27 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.27 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.27 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.26 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.26 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.26 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.26 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.25 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.25 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.25 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.25 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.24 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.24 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.24 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.24 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.23 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.23 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.23 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.23 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.23 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.23 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.23 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.22 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.22 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.22 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.21 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.21 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.21 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.2 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.2 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.2 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.2 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.2 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.2 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.2 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.19 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.19 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.19 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.19 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.19 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.18 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.18 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.18 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.18 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.18 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.17 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.17 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.17 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.17 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.17 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.17 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.16 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.16 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.16 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.16 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.16 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.15 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.15 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.14 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.14 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.13 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.13 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.13 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.13 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.13 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.13 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.13 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.12 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.12 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.12 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.12 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.11 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.11 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.11 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.11 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.1 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.1 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.1 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.09 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.09 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.09 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.09 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.09 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.09 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.09 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.08 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.07 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.07 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.07 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.07 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.06 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.06 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.06 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.06 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 99.06 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.06 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.05 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.05 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.05 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.03 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.03 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.03 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.03 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.02 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.02 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.02 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.02 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.02 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.01 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.01 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.0 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.99 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.99 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.98 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.98 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.98 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.97 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.96 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.96 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.94 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.93 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.92 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.91 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.91 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.91 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.9 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.9 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.89 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.89 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.89 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.88 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.88 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.88 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.87 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.87 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.87 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.86 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.85 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.85 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.84 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.83 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.82 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.82 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.8 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.78 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.78 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.77 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.77 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.75 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.74 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.74 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.73 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.72 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.7 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.68 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.67 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.66 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.65 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.64 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.63 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.62 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.62 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.6 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.6 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.6 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.59 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.59 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.58 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.57 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.54 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.53 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 98.52 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.51 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.5 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.48 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.48 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.45 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.42 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.4 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.39 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.36 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.35 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.33 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.32 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.32 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.31 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.29 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.26 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.21 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.18 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.15 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.11 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.06 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.0 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 97.95 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.94 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 97.84 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.78 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.71 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.7 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.51 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.48 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.47 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 97.24 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.16 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 97.06 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 97.06 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 97.01 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.98 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.96 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.95 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.92 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.81 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.79 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.77 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 96.75 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.73 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.7 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.69 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.66 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.65 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.64 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.61 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.59 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.57 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.57 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.52 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.52 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.5 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 96.43 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.42 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.38 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.37 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.35 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 96.33 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 96.33 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.32 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 96.31 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.22 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 96.22 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 96.2 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.2 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 96.14 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 96.13 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.08 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 96.0 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.96 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 95.95 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 95.81 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 95.81 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 95.78 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.75 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 95.73 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 95.67 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.66 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 95.66 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 95.63 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 95.62 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.61 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 95.6 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 95.45 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 95.42 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 95.39 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.39 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 95.34 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.34 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 95.33 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 95.29 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.19 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 95.09 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 95.08 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 95.08 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 95.03 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 94.93 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 94.91 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 94.9 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.89 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.85 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 94.82 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 94.8 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 94.72 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 94.58 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 94.52 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 94.42 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 94.41 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 94.26 | |
| 3ea0_A | 245 | ATPase, para family; alpha-beta-alpha sandwich, st | 94.26 | |
| 2oze_A | 298 | ORF delta'; para, walker type atpases, DNA segrega | 94.22 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 94.2 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 94.16 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 93.98 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 93.94 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 93.91 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 93.84 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 93.74 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 93.69 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 93.68 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 93.58 | |
| 3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucle | 93.56 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 93.54 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 93.47 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 93.47 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 93.45 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 93.43 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 93.39 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 93.34 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 93.26 | |
| 3q9l_A | 260 | Septum site-determining protein MIND; ATPase, bact | 93.14 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 93.14 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 93.12 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 93.1 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 93.09 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 93.07 | |
| 2xj4_A | 286 | MIPZ; replication, cell division, ATPase, WACA; 1. | 93.0 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 92.95 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 92.94 | |
| 1wcv_1 | 257 | SOJ, segregation protein; ATPase, bacterial, chrom | 92.83 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 92.73 | |
| 1g3q_A | 237 | MIND ATPase, cell division inhibitor; alpha-beta-a | 92.6 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 92.38 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 92.29 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 92.23 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 92.23 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 92.2 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 92.18 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 92.02 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 92.0 | |
| 3ez2_A | 398 | Plasmid partition protein A; type IA, DNA binding, | 91.94 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 91.87 | |
| 3cio_A | 299 | ETK, tyrosine-protein kinase ETK; WZC, escherichia | 91.84 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 91.59 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 91.48 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 91.47 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 91.46 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 91.45 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 91.37 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 91.22 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 91.21 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 91.17 | |
| 3ez9_A | 403 | Para; DNA binding, winged-HTH, partition, biosynth | 91.14 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 91.13 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 91.12 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 90.96 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 90.91 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 90.89 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 90.86 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 90.82 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 90.82 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 90.8 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 90.66 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 90.64 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 90.63 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 90.61 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 90.59 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 90.56 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 90.56 | |
| 2nvu_B | 805 | Maltose binding protein/NEDD8-activating enzyme E1 | 90.53 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 90.41 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 90.4 | |
| 3eqz_A | 135 | Response regulator; structural genomics, unknown f | 90.38 | |
| 3f6c_A | 134 | Positive transcription regulator EVGA; structural | 90.31 | |
| 2rjn_A | 154 | Response regulator receiver:metal-dependent phosph | 90.27 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 90.25 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 90.25 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 90.24 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 90.23 | |
| 3eod_A | 130 | Protein HNR; response regulator, phosphoprotein, t | 90.09 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 90.09 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 90.07 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 90.07 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 90.06 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 90.05 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 90.03 | |
| 3hv2_A | 153 | Response regulator/HD domain protein; PSI-2, NYSGX | 90.01 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 89.96 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 89.83 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 89.81 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 89.74 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 89.74 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 89.7 | |
| 1hyq_A | 263 | MIND, cell division inhibitor (MIND-1); MINC, FTSZ | 89.63 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 89.61 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 89.56 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 89.52 | |
| 3kto_A | 136 | Response regulator receiver protein; PSI-II,struct | 89.51 | |
| 3kcn_A | 151 | Adenylate cyclase homolog; SGX, PSI 2, structural | 89.47 | |
| 3cz5_A | 153 | Two-component response regulator, LUXR family; str | 89.47 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 89.39 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 89.39 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 89.36 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 89.32 | |
| 2ph1_A | 262 | Nucleotide-binding protein; alpha-beta protein, st | 89.32 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 89.27 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 89.26 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 89.26 | |
| 2qxy_A | 142 | Response regulator; regulation of transcription, N | 89.23 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 89.21 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 89.17 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 89.15 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 89.13 | |
| 3a10_A | 116 | Response regulator; phosphoacceptor, signaling pro | 89.12 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 89.09 | |
| 3jte_A | 143 | Response regulator receiver protein; structural ge | 89.08 | |
| 3eul_A | 152 | Possible nitrate/nitrite response transcriptional | 89.06 | |
| 3lte_A | 132 | Response regulator; structural genomics, PSI, prot | 89.0 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 88.88 | |
| 4e7p_A | 150 | Response regulator; DNA binding, cytosol, transcri | 88.86 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 88.84 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 88.83 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 88.81 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 88.79 | |
| 3crn_A | 132 | Response regulator receiver domain protein, CHEY-; | 88.78 |
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-29 Score=208.64 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=137.2
Q ss_pred CCCCChhHHHHHHHHHhhCCCC---EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccC-Cc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQ---LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYA-NC 94 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~---~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~-~~ 94 (220)
-..+.|..+++|..|+...+++ +||||||| +|++|++||.++++ +++|++||.+ +++++.|+++++ ++. ++
T Consensus 34 ~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G-~G~~~~~la~~~~~-~~~v~~vD~~-~~~~~~a~~~~~~~g~~~~~ 110 (221)
T 3dr5_A 34 LPAPDEMTGQLLTTLAATTNGNGSTGAIAITPA-AGLVGLYILNGLAD-NTTLTCIDPE-SEHQRQAKALFREAGYSPSR 110 (221)
T ss_dssp CCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTT-HHHHHHHHHHHSCT-TSEEEEECSC-HHHHHHHHHHHHHTTCCGGG
T ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCC-chHHHHHHHHhCCC-CCEEEEEECC-HHHHHHHHHHHHHcCCCcCc
Confidence 4678999999999999999998 99999996 99999999999876 8999999999 999999999997 776 78
Q ss_pred EEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC----------------
Q 042616 95 IEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS---------------- 157 (220)
Q Consensus 95 Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~---------------- 157 (220)
|++++||+.+.++.+ .++||+||+|+++ .+|.++++.+.+. |+| ||+|++||++++|.
T Consensus 111 i~~~~gda~~~l~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~~--Lkp-GG~lv~dn~~~~g~v~~~~~~~~~~~~~~~ 185 (221)
T 3dr5_A 111 VRFLLSRPLDVMSRLANDSYQLVFGQVSP--MDLKALVDAAWPL--LRR-GGALVLADALLDGTIADQTRKDRDTQAARD 185 (221)
T ss_dssp EEEECSCHHHHGGGSCTTCEEEEEECCCT--TTHHHHHHHHHHH--EEE-EEEEEETTTTGGGTCSCSSCCCHHHHHHHH
T ss_pred EEEEEcCHHHHHHHhcCCCcCeEEEcCcH--HHHHHHHHHHHHH--cCC-CcEEEEeCCCCCCcCCCCCCCChHHHHHHH
Confidence 999999999999876 5789999999999 9999999999999 876 99999999998761
Q ss_pred cc-------ceEEEeeecCCcEEEEEEe
Q 042616 158 WR-------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 158 ~~-------~~~s~~lPig~Gl~v~~~~ 178 (220)
|+ +|+++++|+|+|+.|+++-
T Consensus 186 ~~~~l~~~~~~~~~~lp~gdGl~~~~~~ 213 (221)
T 3dr5_A 186 ADEYIRSIEGAHVARLPLGAGLTVVTKA 213 (221)
T ss_dssp HHHHHTTCTTEEEEEESSTTCEEEEEEC
T ss_pred HHHHHhhCCCeeEEEeeccchHHHHHHH
Confidence 22 7999999999999999986
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-29 Score=211.16 Aligned_cols=163 Identities=17% Similarity=0.173 Sum_probs=136.4
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
+.+.|..+++|..++...++++||||||| +|++|++||.++++ +++|++||.+ +++++.|+++++ ++.++|++++
T Consensus 42 ~~i~~~~~~~l~~l~~~~~~~~VLDiG~G-~G~~t~~la~~~~~-~~~v~~iD~~-~~~~~~a~~~~~~~g~~~~i~~~~ 118 (242)
T 3r3h_A 42 MQVAPEQAQFMQMLIRLTRAKKVLELGTF-TGYSALAMSLALPD-DGQVITCDIN-EGWTKHAHPYWREAKQEHKIKLRL 118 (242)
T ss_dssp TSCCHHHHHHHHHHHHHHTCSEEEEEESC-CSHHHHHHHHTSCT-TCEEEEEECC-CSSCCCSHHHHHHTTCTTTEEEEE
T ss_pred CccCHHHHHHHHHHHhhcCcCEEEEeeCC-cCHHHHHHHHhCCC-CCEEEEEECC-HHHHHHHHHHHHHcCCCCcEEEEE
Confidence 45889999999999999999999999996 99999999999876 8999999999 999999999997 7777999999
Q ss_pred cchhhhhhhc-----CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC----------------c
Q 042616 100 GDAQKLLMGD-----YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS----------------W 158 (220)
Q Consensus 100 gda~~~L~~~-----~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~----------------~ 158 (220)
||+.+.++.+ .++||+||+|+++ ..|..+++.+.+. |+| ||+|++||++++|. |
T Consensus 119 gda~~~l~~~~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~~--Lkp-GG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~ 193 (242)
T 3r3h_A 119 GPALDTLHSLLNEGGEHQFDFIFIDADK--TNYLNYYELALKL--VTP-KGLIAIDNIFWDGKVIDPNDTSGQTREIKKL 193 (242)
T ss_dssp SCHHHHHHHHHHHHCSSCEEEEEEESCG--GGHHHHHHHHHHH--EEE-EEEEEEECSSSSSCSSCTTCCCHHHHHHHHH
T ss_pred cCHHHHHHHHhhccCCCCEeEEEEcCCh--HHhHHHHHHHHHh--cCC-CeEEEEECCccCCcccCccccChHHHHHHHH
Confidence 9999988765 4789999999998 9999999999999 876 99999999998772 2
Q ss_pred c-------ceEEEeeecCCcEEEEEEeecCCCC-CCCcCcCc
Q 042616 159 R-------GYKTHFLPIGEGLLVTRIGENSDVG-GGRKRSRW 192 (220)
Q Consensus 159 ~-------~~~s~~lPig~Gl~v~~~~~~~~~~-~~~~~~~w 192 (220)
. +|+++++|+|+|+.|++++.....- ++--..+|
T Consensus 194 ~~~l~~~~~~~~~~lp~~dG~~~~~k~~~~~~~~~~~~~~~~ 235 (242)
T 3r3h_A 194 NQVIKNDSRVFVSLLAIADGMFLVQPIAENLYFQSHHHHHHW 235 (242)
T ss_dssp HHHHHTCCSEEEEEESSSSCEEEEEEC---------------
T ss_pred HHHHhhCCCEEEEEEEccCceEEEEEcCCCcchhhccccccc
Confidence 2 6999999999999999998654422 33344555
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=199.16 Aligned_cols=149 Identities=17% Similarity=0.147 Sum_probs=134.4
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
+.+.|..+++|..++...++++||||||| +|++|++||.++++ +++|++||.+ +++++.|+++++ ++.++|++++
T Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~VLeiG~G-~G~~~~~la~~~~~-~~~v~~iD~~-~~~~~~a~~~~~~~g~~~~i~~~~ 128 (237)
T 3c3y_A 52 MSTSPLAGQLMSFVLKLVNAKKTIEVGVF-TGYSLLLTALSIPD-DGKITAIDFD-REAYEIGLPFIRKAGVEHKINFIE 128 (237)
T ss_dssp GSCCHHHHHHHHHHHHHTTCCEEEEECCT-TSHHHHHHHHHSCT-TCEEEEEESC-HHHHHHHHHHHHHTTCGGGEEEEE
T ss_pred CCcCHHHHHHHHHHHHhhCCCEEEEeCCC-CCHHHHHHHHhCCC-CCEEEEEECC-HHHHHHHHHHHHHcCCCCcEEEEE
Confidence 45789999999999999999999999996 99999999999876 7999999999 999999999997 7767899999
Q ss_pred cchhhhhhhc------CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC----------------
Q 042616 100 GDAQKLLMGD------YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS---------------- 157 (220)
Q Consensus 100 gda~~~L~~~------~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~---------------- 157 (220)
||+.+.++.+ .++||+||+|+++ ..|..+++.+.+. |+| ||+|++||++++|.
T Consensus 129 gda~~~l~~l~~~~~~~~~fD~I~~d~~~--~~~~~~l~~~~~~--L~p-GG~lv~d~~~~~g~~~~~~~~~~~~~r~~~ 203 (237)
T 3c3y_A 129 SDAMLALDNLLQGQESEGSYDFGFVDADK--PNYIKYHERLMKL--VKV-GGIVAYDNTLWGGTVAQPESEVPDFMKENR 203 (237)
T ss_dssp SCHHHHHHHHHHSTTCTTCEEEEEECSCG--GGHHHHHHHHHHH--EEE-EEEEEEECTTGGGGGGSCGGGSCGGGHHHH
T ss_pred cCHHHHHHHHHhccCCCCCcCEEEECCch--HHHHHHHHHHHHh--cCC-CeEEEEecCCcCCccCCCcccchhhHHHHH
Confidence 9999988765 4689999999999 9999999999999 876 99999999987651
Q ss_pred -----cc-------ceEEEeeecCCcEEEEEEe
Q 042616 158 -----WR-------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 158 -----~~-------~~~s~~lPig~Gl~v~~~~ 178 (220)
++ +|.++++|+|+|+.+++++
T Consensus 204 ~~i~~~~~~l~~~~~~~~~~lp~~dG~~~~~~~ 236 (237)
T 3c3y_A 204 EAVIELNKLLAADPRIEIVHLPLGDGITFCRRL 236 (237)
T ss_dssp HHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred HHHHHHHHHHhcCCCeEEEEEEeCCceEEEEEc
Confidence 11 7999999999999999986
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-27 Score=200.62 Aligned_cols=149 Identities=22% Similarity=0.238 Sum_probs=134.5
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
+.+.|..+++|..++...++++||||||| +|++|++||.++++ +++|++||.+ +++++.|+++++ ++.++|++++
T Consensus 61 ~~~~~~~~~ll~~l~~~~~~~~VLeiG~G-~G~~~~~la~~~~~-~~~v~~iD~s-~~~~~~a~~~~~~~g~~~~i~~~~ 137 (247)
T 1sui_A 61 MTTSADEGQFLSMLLKLINAKNTMEIGVY-TGYSLLATALAIPE-DGKILAMDIN-KENYELGLPVIKKAGVDHKIDFRE 137 (247)
T ss_dssp GSCCHHHHHHHHHHHHHTTCCEEEEECCG-GGHHHHHHHHHSCT-TCEEEEEESC-CHHHHHHHHHHHHTTCGGGEEEEE
T ss_pred CCcCHHHHHHHHHHHHhhCcCEEEEeCCC-cCHHHHHHHHhCCC-CCEEEEEECC-HHHHHHHHHHHHHcCCCCCeEEEE
Confidence 56789999999999999999999999996 99999999999876 7999999999 999999999997 6767899999
Q ss_pred cchhhhhhhc------CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC----------------
Q 042616 100 GDAQKLLMGD------YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS---------------- 157 (220)
Q Consensus 100 gda~~~L~~~------~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~---------------- 157 (220)
||+.+.++.+ .++||+||+|+++ .+|..+++.+.+. |+| ||+|++||++++|.
T Consensus 138 gda~~~l~~l~~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~~--Lkp-GG~lv~d~~~~~g~v~~~~~~~~~~~~~~~ 212 (247)
T 1sui_A 138 GPALPVLDEMIKDEKNHGSYDFIFVDADK--DNYLNYHKRLIDL--VKV-GGVIGYDNTLWNGSVVAPPDAPLRKYVRYY 212 (247)
T ss_dssp SCHHHHHHHHHHSGGGTTCBSEEEECSCS--TTHHHHHHHHHHH--BCT-TCCEEEECTTGGGGGGCCTTSCCCHHHHHH
T ss_pred CCHHHHHHHHHhccCCCCCEEEEEEcCch--HHHHHHHHHHHHh--CCC-CeEEEEecCCcCCcccCCCccchhhhhhHH
Confidence 9999988765 4789999999999 8999999999999 876 99999999998761
Q ss_pred ------cc-------ceEEEeeecCCcEEEEEEe
Q 042616 158 ------WR-------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 158 ------~~-------~~~s~~lPig~Gl~v~~~~ 178 (220)
++ +|.++++|+|+|+.+++|+
T Consensus 213 ~~~i~~~~~~l~~~~~~~~~~lp~~dG~~l~~k~ 246 (247)
T 1sui_A 213 RDFVLELNKALAVDPRIEICMLPVGDGITICRRI 246 (247)
T ss_dssp HHHHHHHHHHHHTCTTBCCEEECSTTCEEEECBC
T ss_pred HHHHHHHHHHHhhCCCeEEEEEecCCccEEEEEc
Confidence 11 6899999999999999875
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=185.69 Aligned_cols=149 Identities=16% Similarity=0.201 Sum_probs=134.5
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
+.+.|..+++|..++...++++||||||| +|++|++|+.++++ +++|+++|.+ +++++.|+++++ ++.++|++++
T Consensus 46 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G-~G~~~~~la~~~~~-~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~v~~~~ 122 (225)
T 3tr6_A 46 MQTAPEQAQLLALLVKLMQAKKVIDIGTF-TGYSAIAMGLALPK-DGTLITCDVD-EKSTALAKEYWEKAGLSDKIGLRL 122 (225)
T ss_dssp GSCCHHHHHHHHHHHHHHTCSEEEEECCT-TSHHHHHHHTTCCT-TCEEEEEESC-HHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred cccCHHHHHHHHHHHHhhCCCEEEEeCCc-chHHHHHHHHhCCC-CCEEEEEeCC-HHHHHHHHHHHHHCCCCCceEEEe
Confidence 56889999999999999999999999997 99999999998775 7999999999 999999999997 7767899999
Q ss_pred cchhhhhhhcC-----CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC----------------c
Q 042616 100 GDAQKLLMGDY-----RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS----------------W 158 (220)
Q Consensus 100 gda~~~L~~~~-----~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~----------------~ 158 (220)
+|+.+.++.+. ++||+||+|+++ ..+..+++.+.+. |+| ||++++||++++|. |
T Consensus 123 ~d~~~~~~~~~~~~~~~~fD~v~~~~~~--~~~~~~l~~~~~~--L~p-gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~ 197 (225)
T 3tr6_A 123 SPAKDTLAELIHAGQAWQYDLIYIDADK--ANTDLYYEESLKL--LRE-GGLIAVDNVLRRGQVADEENQSENNQLIRLF 197 (225)
T ss_dssp SCHHHHHHHHHTTTCTTCEEEEEECSCG--GGHHHHHHHHHHH--EEE-EEEEEEECSSGGGGGGCTTCCCHHHHHHHHH
T ss_pred CCHHHHHHHhhhccCCCCccEEEECCCH--HHHHHHHHHHHHh--cCC-CcEEEEeCCCcCCcccCccccChHHHHHHHH
Confidence 99998887653 789999999998 8999999999998 876 99999999998762 1
Q ss_pred c-------ceEEEeeecCCcEEEEEEe
Q 042616 159 R-------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 159 ~-------~~~s~~lPig~Gl~v~~~~ 178 (220)
. +|.++++|+|+|+.|++|+
T Consensus 198 ~~~l~~~~~~~~~~lp~~dG~~~~~k~ 224 (225)
T 3tr6_A 198 NQKVYKDERVDMILIPIGDGLTLARKK 224 (225)
T ss_dssp HHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred HHHHhcCCCeEEEEEEcCCccEEEEEC
Confidence 1 6999999999999999986
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=189.73 Aligned_cols=148 Identities=17% Similarity=0.201 Sum_probs=132.7
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
.+.|..+++|..++...++++||||||| +|++|++|+.++++ +++|++||.+ +++++.|+++++ ++.++|+++++
T Consensus 55 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G-~G~~~~~la~~~~~-~~~v~~iD~~-~~~~~~a~~~~~~~g~~~~i~~~~~ 131 (232)
T 3cbg_A 55 QISPEQAQFLGLLISLTGAKQVLEIGVF-RGYSALAMALQLPP-DGQIIACDQD-PNATAIAKKYWQKAGVAEKISLRLG 131 (232)
T ss_dssp SCCHHHHHHHHHHHHHHTCCEEEEECCT-TSHHHHHHHTTSCT-TCEEEEEESC-HHHHHHHHHHHHHHTCGGGEEEEES
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEEecCC-CCHHHHHHHHhCCC-CCEEEEEECC-HHHHHHHHHHHHHcCCCCcEEEEEc
Confidence 6789999999999999999999999997 99999999998876 7899999999 999999999997 66678999999
Q ss_pred chhhhhhhc---C--CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC----------------cc
Q 042616 101 DAQKLLMGD---Y--RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS----------------WR 159 (220)
Q Consensus 101 da~~~L~~~---~--~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~----------------~~ 159 (220)
|+.+.++.+ . ++||+||+|+++ .+|..+++.+.+. |+| ||+|++||++++|. |+
T Consensus 132 d~~~~l~~l~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~~--Lkp-gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~ 206 (232)
T 3cbg_A 132 PALATLEQLTQGKPLPEFDLIFIDADK--RNYPRYYEIGLNL--LRR-GGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFN 206 (232)
T ss_dssp CHHHHHHHHHTSSSCCCEEEEEECSCG--GGHHHHHHHHHHT--EEE-EEEEEEECTTGGGGGGCSSCCSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCCcCEEEECCCH--HHHHHHHHHHHHH--cCC-CeEEEEeCCCcCCccCCcccCChHHHHHHHHH
Confidence 999887654 1 689999999998 9999999999998 876 99999999998751 21
Q ss_pred -------ceEEEeeecCCcEEEEEEe
Q 042616 160 -------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 160 -------~~~s~~lPig~Gl~v~~~~ 178 (220)
++.++++|+++|+.+++++
T Consensus 207 ~~l~~~~~~~~~~lp~~dG~~~~~~~ 232 (232)
T 3cbg_A 207 RDLAQDERVRISVIPLGDGMTLALKK 232 (232)
T ss_dssp HHHTTCTTEEEEEECSBTCEEEEEEC
T ss_pred HHHhhCCCeEEEEEEcCCeEEEEEeC
Confidence 6999999999999999874
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-25 Score=187.15 Aligned_cols=148 Identities=21% Similarity=0.285 Sum_probs=133.6
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
..+.|..+++|..++...++++||||||| +|++|++||.+.+ +++|++||.+ +++++.|+++++ ++.++|++++
T Consensus 53 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G-~G~~~~~la~~~~--~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~v~~~~ 128 (232)
T 3ntv_A 53 PIVDRLTLDLIKQLIRMNNVKNILEIGTA-IGYSSMQFASISD--DIHVTTIERN-ETMIQYAKQNLATYHFENQVRIIE 128 (232)
T ss_dssp CCCCHHHHHHHHHHHHHHTCCEEEEECCS-SSHHHHHHHTTCT--TCEEEEEECC-HHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred CCcCHHHHHHHHHHHhhcCCCEEEEEeCc-hhHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHHHHHcCCCCcEEEEE
Confidence 56789999999999999999999999997 9999999998544 7999999999 999999999997 6767899999
Q ss_pred cchhhhhh-hcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC---------------------
Q 042616 100 GDAQKLLM-GDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS--------------------- 157 (220)
Q Consensus 100 gda~~~L~-~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~--------------------- 157 (220)
+|+.+.++ .+.++||+||+|++. ..|.++++.+.+. |+| ||++++||++++|.
T Consensus 129 ~d~~~~~~~~~~~~fD~V~~~~~~--~~~~~~l~~~~~~--Lkp-gG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~ 203 (232)
T 3ntv_A 129 GNALEQFENVNDKVYDMIFIDAAK--AQSKKFFEIYTPL--LKH-QGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQD 203 (232)
T ss_dssp SCGGGCHHHHTTSCEEEEEEETTS--SSHHHHHHHHGGG--EEE-EEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHH
T ss_pred CCHHHHHHhhccCCccEEEEcCcH--HHHHHHHHHHHHh--cCC-CeEEEEeeCCcCccccCcccccchhhhHHHHHHHH
Confidence 99999888 666889999999999 9999999999998 876 99999999998762
Q ss_pred cc-------ceEEEeeecCCcEEEEEEe
Q 042616 158 WR-------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 158 ~~-------~~~s~~lPig~Gl~v~~~~ 178 (220)
|. +|.++++|+|+|+.|++|+
T Consensus 204 ~~~~l~~~~~~~~~~lp~~dG~~i~~k~ 231 (232)
T 3ntv_A 204 YNEWLIKQPGYTTNFLNIDDGLAISIKG 231 (232)
T ss_dssp HHHHHHTCTTEEEEEECSTTCEEEEEEC
T ss_pred HHHHHhcCCCeEEEEEEcCCceEEEEEC
Confidence 11 6999999999999999986
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-25 Score=184.41 Aligned_cols=152 Identities=13% Similarity=0.132 Sum_probs=132.8
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
+.+.|..+++|..++...++++||||||| +|++|++||.++++ +++|++||.+ +.+++.|+++++ ++.++|++++
T Consensus 40 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G-~G~~~~~la~~~~~-~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~v~~~~ 116 (221)
T 3u81_A 40 MNVGDAKGQIMDAVIREYSPSLVLELGAY-CGYSAVRMARLLQP-GARLLTMEIN-PDCAAITQQMLNFAGLQDKVTILN 116 (221)
T ss_dssp GGCCHHHHHHHHHHHHHHCCSEEEEECCT-TSHHHHHHHTTSCT-TCEEEEEESC-HHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred cccCHHHHHHHHHHHHhcCCCEEEEECCC-CCHHHHHHHHhCCC-CCEEEEEeCC-hHHHHHHHHHHHHcCCCCceEEEE
Confidence 57899999999999999999999999997 99999999998765 7999999999 999999999997 7767899999
Q ss_pred cchhhhhhhcC-----CCccEEEEcCCCCCccHHHHHHHHH--hhcCCCCCCEEEEEecCCCCCC--cc-------ceEE
Q 042616 100 GDAQKLLMGDY-----RGADFVLIDCNIDIDGHKNVFRAAK--ESVMHGSGAGVIVGYNALPKGS--WR-------GYKT 163 (220)
Q Consensus 100 gda~~~L~~~~-----~~~D~VfiD~~k~~~~y~~~l~~l~--~~~~L~~~Ggviv~dNv~~~g~--~~-------~~~s 163 (220)
+|+.+.++.+. ++||+||+|+.. ..|.++++.+. +. |+| ||+++++|+.+++. |. +|.+
T Consensus 117 ~d~~~~l~~~~~~~~~~~fD~V~~d~~~--~~~~~~~~~~~~~~~--Lkp-gG~lv~~~~~~~~~~~~~~~l~~~~~~~~ 191 (221)
T 3u81_A 117 GASQDLIPQLKKKYDVDTLDMVFLDHWK--DRYLPDTLLLEKCGL--LRK-GTVLLADNVIVPGTPDFLAYVRGSSSFEC 191 (221)
T ss_dssp SCHHHHGGGTTTTSCCCCCSEEEECSCG--GGHHHHHHHHHHTTC--CCT-TCEEEESCCCCCCCHHHHHHHHHCTTEEE
T ss_pred CCHHHHHHHHHHhcCCCceEEEEEcCCc--ccchHHHHHHHhccc--cCC-CeEEEEeCCCCcchHHHHHHHhhCCCceE
Confidence 99999887764 689999999998 88877665554 55 765 99999999998872 21 6999
Q ss_pred Eeee-------cCCcEEEEEEeecC
Q 042616 164 HFLP-------IGEGLLVTRIGENS 181 (220)
Q Consensus 164 ~~lP-------ig~Gl~v~~~~~~~ 181 (220)
+++| +++|+.+++++..|
T Consensus 192 ~~~~~~~~~~~~~dG~~~~~~~g~~ 216 (221)
T 3u81_A 192 THYSSYLEYMKVVDGLEKAIYQGPS 216 (221)
T ss_dssp EEEEEEETTTTEEEEEEEEEECCCC
T ss_pred EEcccccccCCCCCceEEEEEeCCC
Confidence 9999 89999999998543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=185.48 Aligned_cols=151 Identities=15% Similarity=0.242 Sum_probs=133.7
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
.+.|..+++|..++...++++||||||| +|++|++||.++++ +++|++||.+ +++++.|+++++ ++.++|+++++
T Consensus 46 ~~~~~~~~~l~~l~~~~~~~~VLdiG~G-~G~~~~~la~~~~~-~~~v~~vD~s-~~~~~~a~~~~~~~g~~~~v~~~~~ 122 (248)
T 3tfw_A 46 DVAANQGQFLALLVRLTQAKRILEIGTL-GGYSTIWMARELPA-DGQLLTLEAD-AHHAQVARENLQLAGVDQRVTLREG 122 (248)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEECCT-TSHHHHHHHTTSCT-TCEEEEEECC-HHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred ccCHHHHHHHHHHHhhcCCCEEEEecCC-chHHHHHHHHhCCC-CCEEEEEECC-HHHHHHHHHHHHHcCCCCcEEEEEc
Confidence 4679999999999999999999999997 99999999998875 7999999999 999999999997 77778999999
Q ss_pred chhhhhhhcCC--CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC----------------cc---
Q 042616 101 DAQKLLMGDYR--GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS----------------WR--- 159 (220)
Q Consensus 101 da~~~L~~~~~--~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~----------------~~--- 159 (220)
|+.+.++.+.+ +||+||+|+++ ..|..+++.+.+. |+| ||+|++||+++.|. |.
T Consensus 123 d~~~~l~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~~--Lkp-GG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l 197 (248)
T 3tfw_A 123 PALQSLESLGECPAFDLIFIDADK--PNNPHYLRWALRY--SRP-GTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMM 197 (248)
T ss_dssp CHHHHHHTCCSCCCCSEEEECSCG--GGHHHHHHHHHHT--CCT-TCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHhcCCCCCeEEEEECCch--HHHHHHHHHHHHh--cCC-CeEEEEeCCCcCCcccCccccchHHHHHHHHHHHH
Confidence 99998887643 89999999998 9999999999998 876 99999999998751 21
Q ss_pred ----ceEEEee-ecC----CcEEEEEEeecC
Q 042616 160 ----GYKTHFL-PIG----EGLLVTRIGENS 181 (220)
Q Consensus 160 ----~~~s~~l-Pig----~Gl~v~~~~~~~ 181 (220)
+|.++++ |+| ||+.|++++.+.
T Consensus 198 ~~~~~~~~~~l~~~g~~~~DG~~i~~~~~~~ 228 (248)
T 3tfw_A 198 GAEPRLTATALQTVGTKGWDGFTLAWVNAAE 228 (248)
T ss_dssp HHCTTEEEEEEEECSTTCSEEEEEEEECCC-
T ss_pred hhCCCEEEEEeecCCCCCCCeeEEEEEeCCc
Confidence 6888887 777 999999998543
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-25 Score=182.88 Aligned_cols=149 Identities=16% Similarity=0.130 Sum_probs=133.3
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
+.+.|..+++|..++...++++||||||| +|+++++|+.++++ +++|+++|.+ +.+++.|+++++ ++.+++++++
T Consensus 51 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G-~G~~~~~la~~~~~-~~~v~~vD~~-~~~~~~a~~~~~~~g~~~~i~~~~ 127 (229)
T 2avd_A 51 SMMTCEQAQLLANLARLIQAKKALDLGTF-TGYSALALALALPA-DGRVVTCEVD-AQPPELGRPLWRQAEAEHKIDLRL 127 (229)
T ss_dssp GSCCHHHHHHHHHHHHHTTCCEEEEECCT-TSHHHHHHHTTSCT-TCEEEEEESC-SHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred CccCHHHHHHHHHHHHhcCCCEEEEEcCC-ccHHHHHHHHhCCC-CCEEEEEECC-HHHHHHHHHHHHHCCCCCeEEEEE
Confidence 57899999999999999999999999997 99999999998765 7899999999 999999999997 6667899999
Q ss_pred cchhhhhhhcC-----CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC----------------c
Q 042616 100 GDAQKLLMGDY-----RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS----------------W 158 (220)
Q Consensus 100 gda~~~L~~~~-----~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~----------------~ 158 (220)
+|+.+.++.+. ++||+||+|+++ ..|..+++.+.+. |+| ||+++++|++++|. |
T Consensus 128 ~d~~~~~~~~~~~~~~~~~D~v~~d~~~--~~~~~~l~~~~~~--L~p-gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~ 202 (229)
T 2avd_A 128 KPALETLDELLAAGEAGTFDVAVVDADK--ENCSAYYERCLQL--LRP-GGILAVLRVLWRGKVLQPPKGDVAAECVRNL 202 (229)
T ss_dssp SCHHHHHHHHHHTTCTTCEEEEEECSCS--TTHHHHHHHHHHH--EEE-EEEEEEECCSGGGGGGSCCTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCCCCccEEEECCCH--HHHHHHHHHHHHH--cCC-CeEEEEECCCcCCcccCcccCChHHHHHHHH
Confidence 99998876542 689999999998 9999999999998 876 99999999997651 1
Q ss_pred c-------ceEEEeeecCCcEEEEEEe
Q 042616 159 R-------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 159 ~-------~~~s~~lPig~Gl~v~~~~ 178 (220)
. ++.++++|+|+|+.|+++.
T Consensus 203 ~~~l~~~~~~~~~~lp~~dGl~~~~k~ 229 (229)
T 2avd_A 203 NERIRRDVRVYISLLPLGDGLTLAFKI 229 (229)
T ss_dssp HHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred HHHHhhCCCEEEEEEecCCceEEEEEC
Confidence 1 6999999999999999874
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=181.01 Aligned_cols=149 Identities=21% Similarity=0.277 Sum_probs=133.0
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
+.+.|..+++|..++...++++||||||| +|++|++||.++++ +++|+++|.+ +++++.|+++++ ++.++|++++
T Consensus 40 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G-~G~~~~~la~~~~~-~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~v~~~~ 116 (223)
T 3duw_A 40 HDVSPTQGKFLQLLVQIQGARNILEIGTL-GGYSTIWLARGLSS-GGRVVTLEAS-EKHADIARSNIERANLNDRVEVRT 116 (223)
T ss_dssp CSCCHHHHHHHHHHHHHHTCSEEEEECCT-TSHHHHHHHTTCCS-SCEEEEEESC-HHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred cccCHHHHHHHHHHHHhhCCCEEEEecCC-ccHHHHHHHHhCCC-CCEEEEEECC-HHHHHHHHHHHHHcCCCCcEEEEE
Confidence 34679999999999999999999999997 99999999998875 7899999999 999999999997 7777899999
Q ss_pred cchhhhhhhcC----CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC----------------cc
Q 042616 100 GDAQKLLMGDY----RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS----------------WR 159 (220)
Q Consensus 100 gda~~~L~~~~----~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~----------------~~ 159 (220)
+|+.+.++.+. ++||+||+|+.. ..+..+++.+.+. |+| ||++++||++++|. |.
T Consensus 117 ~d~~~~~~~~~~~~~~~fD~v~~d~~~--~~~~~~l~~~~~~--L~p-gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~ 191 (223)
T 3duw_A 117 GLALDSLQQIENEKYEPFDFIFIDADK--QNNPAYFEWALKL--SRP-GTVIIGDNVVREGEVIDNTSNDPRVQGIRRFY 191 (223)
T ss_dssp SCHHHHHHHHHHTTCCCCSEEEECSCG--GGHHHHHHHHHHT--CCT-TCEEEEESCSGGGGGGCTTCCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCCCcCEEEEcCCc--HHHHHHHHHHHHh--cCC-CcEEEEeCCCcCCcccCccccchHHHHHHHHH
Confidence 99998876542 579999999998 9999999999998 876 99999999998751 21
Q ss_pred -------ceEEEeeec-----CCcEEEEEEe
Q 042616 160 -------GYKTHFLPI-----GEGLLVTRIG 178 (220)
Q Consensus 160 -------~~~s~~lPi-----g~Gl~v~~~~ 178 (220)
+|.++++|+ |+|+.+++++
T Consensus 192 ~~l~~~~~~~~~~~p~~~~~~~dG~~~~~~~ 222 (223)
T 3duw_A 192 ELIAAEPRVSATALQTVGSKGYDGFIMAVVK 222 (223)
T ss_dssp HHHHHCTTEEEEEEEEEETTEEEEEEEEEEC
T ss_pred HHHhhCCCeEEEEEeccCCCCCCeeEEEEEe
Confidence 699999999 9999999986
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-24 Score=175.82 Aligned_cols=148 Identities=20% Similarity=0.346 Sum_probs=132.7
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
+.+.|..++++..++...++++||||||| +|++|++|+.++++ +++|++||.+ +++++.|+++++ ++.++|++++
T Consensus 38 p~~~~~~~~~l~~l~~~~~~~~vLdiG~G-~G~~~~~la~~~~~-~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~v~~~~ 114 (210)
T 3c3p_A 38 PIVDRQTGRLLYLLARIKQPQLVVVPGDG-LGCASWWFARAISI-SSRVVMIDPD-RDNVEHARRMLHDNGLIDRVELQV 114 (210)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSEEEEESCG-GGHHHHHHHTTSCT-TCEEEEEESC-HHHHHHHHHHHHHHSGGGGEEEEE
T ss_pred CCcCHHHHHHHHHHHHhhCCCEEEEEcCC-ccHHHHHHHHhCCC-CCEEEEEECC-HHHHHHHHHHHHHCCCCceEEEEE
Confidence 57899999999999998899999999996 99999999998775 7999999999 999999999997 6667899999
Q ss_pred cchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC---------------cc-----
Q 042616 100 GDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS---------------WR----- 159 (220)
Q Consensus 100 gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~---------------~~----- 159 (220)
+|+.+.++...+ ||+||+|+.+ ..+..+++.+.+. |+| ||+++++|+++.|. |.
T Consensus 115 ~d~~~~~~~~~~-fD~v~~~~~~--~~~~~~l~~~~~~--Lkp-gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~ 188 (210)
T 3c3p_A 115 GDPLGIAAGQRD-IDILFMDCDV--FNGADVLERMNRC--LAK-NALLIAVNALRRGSVAESHEDPETAALREFNHHLSR 188 (210)
T ss_dssp SCHHHHHTTCCS-EEEEEEETTT--SCHHHHHHHHGGG--EEE-EEEEEEESSSSCC------------CCCHHHHHHTT
T ss_pred ecHHHHhccCCC-CCEEEEcCCh--hhhHHHHHHHHHh--cCC-CeEEEEECccccCcccCcccchHHHHHHHHHHHHhh
Confidence 999998876556 9999999998 8999999999998 876 99999999988641 11
Q ss_pred --ceEEEeeecCCcEEEEEEe
Q 042616 160 --GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 160 --~~~s~~lPig~Gl~v~~~~ 178 (220)
++.++++|+++|+.+++|+
T Consensus 189 ~~~~~~~~~p~~~G~~~~~~~ 209 (210)
T 3c3p_A 189 RRDFFTTIVPVGNGVLLGYRL 209 (210)
T ss_dssp CTTEEEEEECSTTCEEEEEEC
T ss_pred CCCeEEEEEecCCceEEEEeC
Confidence 5899999999999999986
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.7e-23 Score=171.99 Aligned_cols=150 Identities=19% Similarity=0.249 Sum_probs=133.0
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
+.+.|..+++|..++...++++||||||| +|+++++|+...++ +++|+++|.+ ++.++.|+++++ ++.++|++++
T Consensus 42 ~~~~~~~~~~l~~l~~~~~~~~VLdiG~G-~G~~~~~la~~~~~-~~~v~~vD~~-~~~~~~a~~~~~~~g~~~~v~~~~ 118 (239)
T 2hnk_A 42 MQISPEEGQFLNILTKISGAKRIIEIGTF-TGYSSLCFASALPE-DGKILCCDVS-EEWTNVARKYWKENGLENKIFLKL 118 (239)
T ss_dssp CSCCHHHHHHHHHHHHHHTCSEEEEECCT-TCHHHHHHHHHSCT-TCEEEEEESC-HHHHHHHHHHHHHTTCGGGEEEEE
T ss_pred cccCHHHHHHHHHHHHhhCcCEEEEEeCC-CCHHHHHHHHhCCC-CCEEEEEECC-HHHHHHHHHHHHHcCCCCCEEEEE
Confidence 47899999999999999999999999997 99999999998765 7899999999 999999999996 6656799999
Q ss_pred cchhhhhhhc---------------C-CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC------
Q 042616 100 GDAQKLLMGD---------------Y-RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS------ 157 (220)
Q Consensus 100 gda~~~L~~~---------------~-~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~------ 157 (220)
+|+.+.++.+ . ++||+||+|+.. ..+..+++.+.+. |+| ||+++++|++++|.
T Consensus 119 ~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~--~~~~~~l~~~~~~--L~p-gG~lv~~~~~~~g~~~~~~~ 193 (239)
T 2hnk_A 119 GSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK--ENYPNYYPLILKL--LKP-GGLLIADNVLWDGSVADLSH 193 (239)
T ss_dssp SCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG--GGHHHHHHHHHHH--EEE-EEEEEEECSSGGGGGGCTTC
T ss_pred CCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCH--HHHHHHHHHHHHH--cCC-CeEEEEEccccCCcccCccc
Confidence 9999877643 2 689999999988 8999999999999 876 99999999988651
Q ss_pred ----------cc-------ceEEEeeecCCcEEEEEEee
Q 042616 158 ----------WR-------GYKTHFLPIGEGLLVTRIGE 179 (220)
Q Consensus 158 ----------~~-------~~~s~~lPig~Gl~v~~~~~ 179 (220)
|. +|.++++|+++|+.+++++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~ 232 (239)
T 2hnk_A 194 QEPSTVGIRKFNELVYNDSLVDVSLVPIADGVSLVRKRL 232 (239)
T ss_dssp CCHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEECC
T ss_pred cchHHHHHHHHHHHHhhCCCeEEEEEEcCCceEeeeehh
Confidence 11 69999999999999999874
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=164.07 Aligned_cols=151 Identities=19% Similarity=0.195 Sum_probs=131.6
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
+..++.|..++++..++...++++||||||| +|+++++|+...+ +++|+++|.+ +.+++.|+++++ ++.++|++
T Consensus 34 ~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G-~G~~~~~la~~~~--~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~v~~ 109 (233)
T 2gpy_A 34 QVPIMDLLGMESLLHLLKMAAPARILEIGTA-IGYSAIRMAQALP--EATIVSIERD-ERRYEEAHKHVKALGLESRIEL 109 (233)
T ss_dssp TCCCCCHHHHHHHHHHHHHHCCSEEEEECCT-TSHHHHHHHHHCT--TCEEEEECCC-HHHHHHHHHHHHHTTCTTTEEE
T ss_pred CCCCcCHHHHHHHHHHHhccCCCEEEEecCC-CcHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHHHHHHcCCCCcEEE
Confidence 3467899999999999999999999999997 9999999999875 6899999999 999999999997 66678999
Q ss_pred EEcchhhhhhhc--CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC------------------
Q 042616 98 VKGDAQKLLMGD--YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS------------------ 157 (220)
Q Consensus 98 v~gda~~~L~~~--~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~------------------ 157 (220)
+++|+.+.++.. .++||+||+|+.. ..+..+++.+.+. |+| ||+++++|+++.|.
T Consensus 110 ~~~d~~~~~~~~~~~~~fD~I~~~~~~--~~~~~~l~~~~~~--L~p-gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~ 184 (233)
T 2gpy_A 110 LFGDALQLGEKLELYPLFDVLFIDAAK--GQYRRFFDMYSPM--VRP-GGLILSDNVLFRGLVAETDIEHKRHKQLATKI 184 (233)
T ss_dssp ECSCGGGSHHHHTTSCCEEEEEEEGGG--SCHHHHHHHHGGG--EEE-EEEEEEETTTC---------------------
T ss_pred EECCHHHHHHhcccCCCccEEEECCCH--HHHHHHHHHHHHH--cCC-CeEEEEEcCCcCCccCCccccccchhHHHHHH
Confidence 999999877765 4689999999998 8999999999998 876 99999999987651
Q ss_pred --c---c----ceEEEeeecCCcEEEEEEee
Q 042616 158 --W---R----GYKTHFLPIGEGLLVTRIGE 179 (220)
Q Consensus 158 --~---~----~~~s~~lPig~Gl~v~~~~~ 179 (220)
| . +|.++++|+++|+.+++++.
T Consensus 185 ~~~~~~l~~~~~~~~~~~p~~dG~~~~~~~~ 215 (233)
T 2gpy_A 185 DTYNQWLLEHPQYDTRIFPVGDGIAISIKRE 215 (233)
T ss_dssp ----CTTTTCTTEEEEEECSTTCEEEEEEC-
T ss_pred HHHHHHHHhCCCeEEEEEEcCCeEEEEEEcC
Confidence 1 1 68999999999999999874
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=163.62 Aligned_cols=122 Identities=17% Similarity=0.036 Sum_probs=101.3
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--cc--CCcEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RY--ANCIEF 97 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~--~~~Ve~ 97 (220)
.++.|++++||.. ...++++|||||| ||||+|||+. . +|+|+|||.| ++.++.|+++++ ++ .++|++
T Consensus 14 ~~v~~~~~~~L~~--~l~~a~~VLEiGt---GySTl~lA~~--~-~g~VvtvE~d-~~~~~~ar~~l~~~g~~~~~~I~~ 84 (202)
T 3cvo_A 14 LTMPPAEAEALRM--AYEEAEVILEYGS---GGSTVVAAEL--P-GKHVTSVESD-RAWARMMKAWLAANPPAEGTEVNI 84 (202)
T ss_dssp CCSCHHHHHHHHH--HHHHCSEEEEESC---SHHHHHHHTS--T-TCEEEEEESC-HHHHHHHHHHHHHSCCCTTCEEEE
T ss_pred ccCCHHHHHHHHH--HhhCCCEEEEECc---hHHHHHHHHc--C-CCEEEEEeCC-HHHHHHHHHHHHHcCCCCCCceEE
Confidence 5789999999988 5568999999996 5899999983 2 7999999999 999999999997 77 789999
Q ss_pred EEcchhhh--------------hhh-------cC--CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 98 VKGDAQKL--------------LMG-------DY--RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 98 v~gda~~~--------------L~~-------~~--~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
++||+.+. ++. +. ++|||||||+++ . ..++..+.++ |+| ||+||+||+++
T Consensus 85 ~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k--~--~~~~~~~l~~--l~~-GG~Iv~DNv~~ 157 (202)
T 3cvo_A 85 VWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF--R--VGCALATAFS--ITR-PVTLLFDDYSQ 157 (202)
T ss_dssp EECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS--H--HHHHHHHHHH--CSS-CEEEEETTGGG
T ss_pred EEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC--c--hhHHHHHHHh--cCC-CeEEEEeCCcC
Confidence 99997654 221 22 689999999998 4 3777778888 865 99999999887
Q ss_pred CCCcc
Q 042616 155 KGSWR 159 (220)
Q Consensus 155 ~g~~~ 159 (220)
++.|.
T Consensus 158 r~~y~ 162 (202)
T 3cvo_A 158 RRWQH 162 (202)
T ss_dssp CSSGG
T ss_pred CcchH
Confidence 66443
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-19 Score=155.12 Aligned_cols=149 Identities=9% Similarity=-0.023 Sum_probs=118.1
Q ss_pred CCChhHHHHHHHHHhh----CCCCEEEEEcCCchHHHHHHHHHHcCC---CCcEEEEEeCCch-----------------
Q 042616 23 GKEPDVGEFISALAAG----NNAQLIVMACSSIAVSRTLALVAAARQ---TGGRVVCILSGVI----------------- 78 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~----~~a~~ILEIGtg~~G~sTl~LA~A~~~---~~grV~tIE~d~~----------------- 78 (220)
++.+..+.+|+.|++. ..|+.|||+||. .|+|+++||.++++ ++++|+++|..|.
T Consensus 85 mv~~~r~~~L~~l~~~v~~~~~pg~IlEiGv~-~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~ 163 (282)
T 2wk1_A 85 MIGIKRLENIRQCVEDVIGNNVPGDLVETGVW-RGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMAL 163 (282)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCCEEEEECCT-TSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCG
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCCcEEEeecC-chHHHHHHHHHhHhcCCCCCEEEEEECCCCCCccccccccccccccc
Confidence 4667788888888876 559999999995 99999999998863 3689999997521
Q ss_pred --------hHHHHHHHHhc--cc-CCcEEEEEcchhhhhhhcC-CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEE
Q 042616 79 --------GDIDASKKSLG--RY-ANCIEFVKGDAQKLLMGDY-RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGV 146 (220)
Q Consensus 79 --------~~~~~Ar~~l~--g~-~~~Ve~v~gda~~~L~~~~-~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggv 146 (220)
..++.++++++ |+ .++|+++.|++.+.||.+. ++|||||||+++ +..|.++|+.+.++ |+| ||+
T Consensus 164 ~~~~~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~-y~~~~~~Le~~~p~--L~p-GGi 239 (282)
T 2wk1_A 164 HRRNSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL-YESTWDTLTNLYPK--VSV-GGY 239 (282)
T ss_dssp GGGHHHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS-HHHHHHHHHHHGGG--EEE-EEE
T ss_pred ccccccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc-cccHHHHHHHHHhh--cCC-CEE
Confidence 14677999997 77 4899999999999999863 689999999998 33467899999999 875 999
Q ss_pred EEEecCCC-CC---Ccc------ceEEEeeecCCcEEEEE
Q 042616 147 IVGYNALP-KG---SWR------GYKTHFLPIGEGLLVTR 176 (220)
Q Consensus 147 iv~dNv~~-~g---~~~------~~~s~~lPig~Gl~v~~ 176 (220)
||+||+.+ +| .|. ++...+++++.+...=+
T Consensus 240 Iv~DD~~~~~G~~~Av~Ef~~~~~i~~~i~~~~~~~v~~r 279 (282)
T 2wk1_A 240 VIVDDYMMCPPCKDAVDEYRAKFDIADELITIDRDGVYWQ 279 (282)
T ss_dssp EEESSCTTCHHHHHHHHHHHHHTTCCSCCEECSSSCEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHhcCCceEEEEecCEEEEEE
Confidence 99999975 55 232 56667788876544433
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-16 Score=132.71 Aligned_cols=118 Identities=12% Similarity=0.040 Sum_probs=99.4
Q ss_pred CCC-hhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHH---cCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEE
Q 042616 23 GKE-PDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAA---ARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFV 98 (220)
Q Consensus 23 ~~~-p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A---~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v 98 (220)
+.. |+.+.++..++...++++||||||| +|++|++||.. +.+ +++|++||.+ +++++.|+ ++.++|+++
T Consensus 63 ~~~~p~~~~~l~~~l~~~~~~~VLDiG~G-tG~~t~~la~~~~~~~~-~~~V~gvD~s-~~~l~~a~----~~~~~v~~~ 135 (236)
T 2bm8_A 63 MLKDPDTQAVYHDMLWELRPRTIVELGVY-NGGSLAWFRDLTKIMGI-DCQVIGIDRD-LSRCQIPA----SDMENITLH 135 (236)
T ss_dssp CCSCHHHHHHHHHHHHHHCCSEEEEECCT-TSHHHHHHHHHHHHTTC-CCEEEEEESC-CTTCCCCG----GGCTTEEEE
T ss_pred ccCCHHHHHHHHHHHHhcCCCEEEEEeCC-CCHHHHHHHHhhhhcCC-CCEEEEEeCC-hHHHHHHh----ccCCceEEE
Confidence 344 8899999998888889999999997 99999999987 344 7999999999 99988777 233689999
Q ss_pred Ecchhhh--hhhcCC-CccEEEEcCCCCCccHHHHHHHHHh-hcCCCCCCEEEEEecC
Q 042616 99 KGDAQKL--LMGDYR-GADFVLIDCNIDIDGHKNVFRAAKE-SVMHGSGAGVIVGYNA 152 (220)
Q Consensus 99 ~gda~~~--L~~~~~-~~D~VfiD~~k~~~~y~~~l~~l~~-~~~L~~~Ggviv~dNv 152 (220)
+||+.+. ++...+ +||+||+|+.+ .++...++.+.+ . |+| ||+++++|+
T Consensus 136 ~gD~~~~~~l~~~~~~~fD~I~~d~~~--~~~~~~l~~~~r~~--Lkp-GG~lv~~d~ 188 (236)
T 2bm8_A 136 QGDCSDLTTFEHLREMAHPLIFIDNAH--ANTFNIMKWAVDHL--LEE-GDYFIIEDM 188 (236)
T ss_dssp ECCSSCSGGGGGGSSSCSSEEEEESSC--SSHHHHHHHHHHHT--CCT-TCEEEECSC
T ss_pred ECcchhHHHHHhhccCCCCEEEECCch--HhHHHHHHHHHHhh--CCC-CCEEEEEeC
Confidence 9999875 554433 79999999998 789999999986 8 876 999999876
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-14 Score=126.00 Aligned_cols=156 Identities=15% Similarity=0.137 Sum_probs=102.7
Q ss_pred HHHhhCCCCEEEEEcCCchH-HHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcC
Q 042616 34 ALAAGNNAQLIVMACSSIAV-SRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDY 110 (220)
Q Consensus 34 ~La~~~~a~~ILEIGtg~~G-~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~ 110 (220)
.++...++++||||||| +| ++++.+|+. .+++|++||.+ +++++.||++++ ++ ++|++++||+.++ + .
T Consensus 116 ~la~l~~g~rVLDIGcG-~G~~ta~~lA~~---~ga~V~gIDis-~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l-~--d 186 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGG-PLPLTGILLSHV---YGMRVNVVEIE-PDIAELSRKVIEGLGV-DGVNVITGDETVI-D--G 186 (298)
T ss_dssp HHTTCCTTCEEEEECCC-SSCHHHHHHHHT---TCCEEEEEESS-HHHHHHHHHHHHHHTC-CSEEEEESCGGGG-G--G
T ss_pred HHcCCCCcCEEEEECCC-ccHHHHHHHHHc---cCCEEEEEECC-HHHHHHHHHHHHhcCC-CCeEEEECchhhC-C--C
Confidence 46788899999999997 65 555666653 37899999999 999999999997 77 8999999999984 4 4
Q ss_pred CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC-CC------------CccceEEEeeecCC--c-EEE
Q 042616 111 RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP-KG------------SWRGYKTHFLPIGE--G-LLV 174 (220)
Q Consensus 111 ~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~-~g------------~~~~~~s~~lPig~--G-l~v 174 (220)
++||+||+++.. .++.++++.+.+. |+| ||++++.+... +. .| +......|.++ + +.+
T Consensus 187 ~~FDvV~~~a~~--~d~~~~l~el~r~--LkP-GG~Lvv~~~~~~r~~l~~~v~~~~~~gf-~~~~~~~p~~~v~N~vv~ 260 (298)
T 3fpf_A 187 LEFDVLMVAALA--EPKRRVFRNIHRY--VDT-ETRIIYRTYTGMRAILYAPVSDDDITGF-RRAGVVLPSGKVNNTSVL 260 (298)
T ss_dssp CCCSEEEECTTC--SCHHHHHHHHHHH--CCT-TCEEEEEECCGGGGGSSCCCCTGGGTTE-EEEEEECCCTTCCCEEEE
T ss_pred CCcCEEEECCCc--cCHHHHHHHHHHH--cCC-CcEEEEEcCcchhhhccccCChhhhhhh-hheeEECCCCCcCcEEEE
Confidence 789999999988 8999999999999 886 99988887532 11 12 34556777774 3 555
Q ss_pred EEEeecCC--CC---CCCcCcCceEecccCCCcee
Q 042616 175 TRIGENSD--VG---GGRKRSRWVVTVDKCTGEEH 204 (220)
Q Consensus 175 ~~~~~~~~--~~---~~~~~~~w~~~~d~~~~~~~ 204 (220)
+++....+ .+ +.++|.-|+.-=..+||..|
T Consensus 261 a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (298)
T 3fpf_A 261 VFKCPDKGELNSKLEGKPIPNPLLGLDSTRTGHHH 295 (298)
T ss_dssp EEECC------------------------------
T ss_pred EEccCCchHHHHHHhcccCCcceeccccccccccc
Confidence 54442212 11 56677777766566777655
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=120.07 Aligned_cols=130 Identities=21% Similarity=0.217 Sum_probs=109.1
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-
Q 042616 11 KAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG- 89 (220)
Q Consensus 11 ~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~- 89 (220)
..|...++.....+.|....++..++...+..+|||+||| +|..++.|+..+.+ +++|+++|.+ +++++.|+++++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vldiG~G-~G~~~~~l~~~~~~-~~~v~~~D~~-~~~~~~a~~~~~~ 140 (255)
T 3mb5_A 64 VDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVG-SGALTLFLANIVGP-EGRVVSYEIR-EDFAKLAWENIKW 140 (255)
T ss_dssp HHHHHHSCCCSCCCCHHHHHHHHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCT-TSEEEEECSC-HHHHHHHHHHHHH
T ss_pred HHHHhhCccccccccHhHHHHHHHhhCCCCCCEEEEecCC-chHHHHHHHHHhCC-CeEEEEEecC-HHHHHHHHHHHHH
Confidence 5677777777777888888888888888889999999997 89999999998665 7999999999 999999999997
Q ss_pred -ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 90 -RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 90 -g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
++.++++++++|+.+.++ ..+||+||+|.+. ...+++.+.+. |+| ||.+++...
T Consensus 141 ~~~~~~v~~~~~d~~~~~~--~~~~D~v~~~~~~----~~~~l~~~~~~--L~~-gG~l~~~~~ 195 (255)
T 3mb5_A 141 AGFDDRVTIKLKDIYEGIE--EENVDHVILDLPQ----PERVVEHAAKA--LKP-GGFFVAYTP 195 (255)
T ss_dssp HTCTTTEEEECSCGGGCCC--CCSEEEEEECSSC----GGGGHHHHHHH--EEE-EEEEEEEES
T ss_pred cCCCCceEEEECchhhccC--CCCcCEEEECCCC----HHHHHHHHHHH--cCC-CCEEEEEEC
Confidence 776779999999998654 3679999998765 45678888888 876 888877543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.55 E-value=9.7e-14 Score=113.31 Aligned_cols=120 Identities=14% Similarity=0.068 Sum_probs=100.0
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
+..++....+...+...+..+|||+||| +|+.++.|+...+ .++|+++|.+ +++++.|+++++ ++ ++++++++
T Consensus 23 ~~~~~i~~~~l~~l~~~~~~~vLDiG~G-~G~~~~~la~~~~--~~~v~~vD~s-~~~~~~a~~~~~~~~~-~~v~~~~~ 97 (204)
T 3e05_A 23 ITKQEVRAVTLSKLRLQDDLVMWDIGAG-SASVSIEASNLMP--NGRIFALERN-PQYLGFIRDNLKKFVA-RNVTLVEA 97 (204)
T ss_dssp SCCHHHHHHHHHHTTCCTTCEEEEETCT-TCHHHHHHHHHCT--TSEEEEEECC-HHHHHHHHHHHHHHTC-TTEEEEEC
T ss_pred CChHHHHHHHHHHcCCCCCCEEEEECCC-CCHHHHHHHHHCC--CCEEEEEeCC-HHHHHHHHHHHHHhCC-CcEEEEeC
Confidence 3555665666555577788999999997 9999999998753 5899999999 999999999997 66 78999999
Q ss_pred chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|+.+.++. .+.||+||++... .++..+++.+.+. |+| ||.+++....
T Consensus 98 d~~~~~~~-~~~~D~i~~~~~~--~~~~~~l~~~~~~--Lkp-gG~l~~~~~~ 144 (204)
T 3e05_A 98 FAPEGLDD-LPDPDRVFIGGSG--GMLEEIIDAVDRR--LKS-EGVIVLNAVT 144 (204)
T ss_dssp CTTTTCTT-SCCCSEEEESCCT--TCHHHHHHHHHHH--CCT-TCEEEEEECB
T ss_pred Chhhhhhc-CCCCCEEEECCCC--cCHHHHHHHHHHh--cCC-CeEEEEEecc
Confidence 99887754 3679999999988 7889999999999 886 8888876544
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=113.84 Aligned_cols=118 Identities=17% Similarity=0.149 Sum_probs=96.8
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
.+..+....++...+...+..+|||+||| +|+.++.||.. +++|++||.+ +++++.|+++++ ++.+++++++
T Consensus 37 ~~~~~~~~~~~l~~l~~~~~~~vLDlGcG-~G~~~~~la~~----~~~v~~vD~s-~~~~~~a~~~~~~~g~~~~v~~~~ 110 (204)
T 3njr_A 37 QITKSPMRALTLAALAPRRGELLWDIGGG-SGSVSVEWCLA----GGRAITIEPR-ADRIENIQKNIDTYGLSPRMRAVQ 110 (204)
T ss_dssp CCCCHHHHHHHHHHHCCCTTCEEEEETCT-TCHHHHHHHHT----TCEEEEEESC-HHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred CCCcHHHHHHHHHhcCCCCCCEEEEecCC-CCHHHHHHHHc----CCEEEEEeCC-HHHHHHHHHHHHHcCCCCCEEEEe
Confidence 44555666666666677778999999997 89999999875 6899999999 999999999997 6655899999
Q ss_pred cchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 100 GDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 100 gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+|+.+.++. ...||+||+++.. +.. +++.+.+. |+| ||.+++....
T Consensus 111 ~d~~~~~~~-~~~~D~v~~~~~~---~~~-~l~~~~~~--Lkp-gG~lv~~~~~ 156 (204)
T 3njr_A 111 GTAPAALAD-LPLPEAVFIGGGG---SQA-LYDRLWEW--LAP-GTRIVANAVT 156 (204)
T ss_dssp SCTTGGGTT-SCCCSEEEECSCC---CHH-HHHHHHHH--SCT-TCEEEEEECS
T ss_pred Cchhhhccc-CCCCCEEEECCcc---cHH-HHHHHHHh--cCC-CcEEEEEecC
Confidence 999997755 4579999999854 445 89999998 876 8888886554
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-13 Score=109.54 Aligned_cols=106 Identities=10% Similarity=0.084 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CCCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~~~D~ 115 (220)
.+.++|||+||| +|..++.++.. ...+|++||.+ +++++.|+++++ ++ ++++++++|+.+.++.. .++||+
T Consensus 43 ~~~~~vLDlgcG-~G~~~~~~~~~---~~~~v~~vD~~-~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~ 116 (189)
T 3p9n_A 43 LTGLAVLDLYAG-SGALGLEALSR---GAASVLFVESD-QRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDL 116 (189)
T ss_dssp CTTCEEEEETCT-TCHHHHHHHHT---TCSEEEEEECC-HHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSE
T ss_pred CCCCEEEEeCCC-cCHHHHHHHHC---CCCeEEEEECC-HHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccE
Confidence 577899999997 99999987762 25699999999 999999999997 66 68999999999987654 478999
Q ss_pred EEEcCCCCC--ccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 116 VLIDCNIDI--DGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 116 VfiD~~k~~--~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
|++|.+... .++.+.++.+.+..+|+| ||++++..
T Consensus 117 i~~~~p~~~~~~~~~~~l~~~~~~~~L~p-gG~l~~~~ 153 (189)
T 3p9n_A 117 VLADPPYNVDSADVDAILAALGTNGWTRE-GTVAVVER 153 (189)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHSSSCCT-TCEEEEEE
T ss_pred EEECCCCCcchhhHHHHHHHHHhcCccCC-CeEEEEEe
Confidence 999987622 246788888888222876 77776653
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.52 E-value=8.1e-14 Score=123.26 Aligned_cols=134 Identities=12% Similarity=0.146 Sum_probs=100.1
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc-CCcEEEEEcchhhhhhhcCCC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY-ANCIEFVKGDAQKLLMGDYRG 112 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~-~~~Ve~v~gda~~~L~~~~~~ 112 (220)
..++++||||||| +|+++..|++.. + .++|++||+| +.+++.|++++. ++ ..+++++++|+.+.++...++
T Consensus 106 ~~~~~~VLdIG~G-~G~~~~~l~~~~-~-~~~v~~vDid-~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~ 181 (314)
T 2b2c_A 106 HPDPKRVLIIGGG-DGGILREVLKHE-S-VEKVTMCEID-EMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNE 181 (314)
T ss_dssp SSSCCEEEEESCT-TSHHHHHHTTCT-T-CCEEEEECSC-HHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTC
T ss_pred CCCCCEEEEEcCC-cCHHHHHHHHcC-C-CCEEEEEECC-HHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCC
Confidence 4578999999996 999999998743 2 6899999999 999999999986 33 468999999999988664578
Q ss_pred ccEEEEcCCCC----CccH-HHHHHHHHhhcCCCCCCEEEEEecCC--CCC-C-----------cc--ceEEEeeec---
Q 042616 113 ADFVLIDCNID----IDGH-KNVFRAAKESVMHGSGAGVIVGYNAL--PKG-S-----------WR--GYKTHFLPI--- 168 (220)
Q Consensus 113 ~D~VfiD~~k~----~~~y-~~~l~~l~~~~~L~~~Ggviv~dNv~--~~g-~-----------~~--~~~s~~lPi--- 168 (220)
||+||+|.... ...| .++++.+.+. |+| ||++++++-. .+. . |. ++.++.+|+
T Consensus 182 fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~--Lkp-gG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~iP~~~~ 258 (314)
T 2b2c_A 182 FDVIITDSSDPVGPAESLFGQSYYELLRDA--LKE-DGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPS 258 (314)
T ss_dssp EEEEEECCC-------------HHHHHHHH--EEE-EEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGG
T ss_pred ceEEEEcCCCCCCcchhhhHHHHHHHHHhh--cCC-CeEEEEECCCcccCHHHHHHHHHHHHHHCCcceEEEEEecCcCC
Confidence 99999998431 1334 7889999999 876 9999998632 221 0 21 466778888
Q ss_pred CC-cEEEEEEe
Q 042616 169 GE-GLLVTRIG 178 (220)
Q Consensus 169 g~-Gl~v~~~~ 178 (220)
|+ |+.++.+.
T Consensus 259 g~~g~~~ask~ 269 (314)
T 2b2c_A 259 GSMGYLICAKN 269 (314)
T ss_dssp GEEEEEEEESS
T ss_pred CceEEEEEeCC
Confidence 45 77777655
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-12 Score=109.74 Aligned_cols=101 Identities=14% Similarity=0.013 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh--hcCCCcc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM--GDYRGAD 114 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~--~~~~~~D 114 (220)
.++.+||||||| +|+.++.||...+ +++|++||++ +++++.|+++++ ++ .+|+++++|+.++.. ...++||
T Consensus 69 ~~~~~vLDiG~G-~G~~~~~la~~~~--~~~v~~vD~s-~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD 143 (240)
T 1xdz_A 69 NQVNTICDVGAG-AGFPSLPIKICFP--HLHVTIVDSL-NKRITFLEKLSEALQL-ENTTFCHDRAETFGQRKDVRESYD 143 (240)
T ss_dssp GGCCEEEEECSS-SCTTHHHHHHHCT--TCEEEEEESC-HHHHHHHHHHHHHHTC-SSEEEEESCHHHHTTCTTTTTCEE
T ss_pred CCCCEEEEecCC-CCHHHHHHHHhCC--CCEEEEEeCC-HHHHHHHHHHHHHcCC-CCEEEEeccHHHhcccccccCCcc
Confidence 367899999997 9999999997543 6899999999 999999999987 66 369999999988642 1246899
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+|+.++ . .++..+++.+.+. |+| ||.+++.
T Consensus 144 ~V~~~~-~--~~~~~~l~~~~~~--Lkp-gG~l~~~ 173 (240)
T 1xdz_A 144 IVTARA-V--ARLSVLSELCLPL--VKK-NGLFVAL 173 (240)
T ss_dssp EEEEEC-C--SCHHHHHHHHGGG--EEE-EEEEEEE
T ss_pred EEEEec-c--CCHHHHHHHHHHh--cCC-CCEEEEE
Confidence 999988 4 5789999999998 886 7777664
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=120.93 Aligned_cols=134 Identities=15% Similarity=0.135 Sum_probs=101.1
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc-CCcEEEEEcchhhhhhhcCCC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY-ANCIEFVKGDAQKLLMGDYRG 112 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~-~~~Ve~v~gda~~~L~~~~~~ 112 (220)
..++++||||||| +|+++..|++.. + ..+|++||+| +++++.|++++. ++ ..+++++++|+.+.++...++
T Consensus 93 ~~~~~~VLdiG~G-~G~~~~~l~~~~-~-~~~v~~vDid-~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~ 168 (304)
T 2o07_A 93 HPNPRKVLIIGGG-DGGVLREVVKHP-S-VESVVQCEID-EDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDA 168 (304)
T ss_dssp SSSCCEEEEEECT-TSHHHHHHTTCT-T-CCEEEEEESC-HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSC
T ss_pred CCCCCEEEEECCC-chHHHHHHHHcC-C-CCEEEEEECC-HHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCC
Confidence 3578999999996 999999988642 2 5899999999 999999999985 34 478999999999988765578
Q ss_pred ccEEEEcCCCCC-----ccHHHHHHHHHhhcCCCCCCEEEEEecCC-CCC-----C--------cc--ceEEEeeecC--
Q 042616 113 ADFVLIDCNIDI-----DGHKNVFRAAKESVMHGSGAGVIVGYNAL-PKG-----S--------WR--GYKTHFLPIG-- 169 (220)
Q Consensus 113 ~D~VfiD~~k~~-----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~-~~g-----~--------~~--~~~s~~lPig-- 169 (220)
||+||+|..... ..+.++++.+.+. |+| ||++++++.. +.. . |. ++.++.+|.-
T Consensus 169 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~--Lkp-gG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~~ 245 (304)
T 2o07_A 169 FDVIITDSSDPMGPAESLFKESYYQLMKTA--LKE-DGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPS 245 (304)
T ss_dssp EEEEEEECC-----------CHHHHHHHHH--EEE-EEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGG
T ss_pred ceEEEECCCCCCCcchhhhHHHHHHHHHhc--cCC-CeEEEEecCCcccchHHHHHHHHHHHHhCCCceeEEEEeccccC
Confidence 999999987511 1235789999998 876 9999998733 322 1 11 5666778883
Q ss_pred --CcEEEEEEe
Q 042616 170 --EGLLVTRIG 178 (220)
Q Consensus 170 --~Gl~v~~~~ 178 (220)
.|+.++.+.
T Consensus 246 g~~g~~~as~~ 256 (304)
T 2o07_A 246 GQIGFMLCSKN 256 (304)
T ss_dssp GEEEEEEEESS
T ss_pred cceEEEEEeCC
Confidence 367777654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=110.19 Aligned_cols=106 Identities=10% Similarity=0.004 Sum_probs=85.8
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
..+.++|||+||| +|..++.++.. ...+|+++|.+ +++++.|+++++ ++.++++++++|+.+.++...+.||+
T Consensus 29 ~~~~~~vLDlGcG-~G~~~~~l~~~---~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 103 (177)
T 2esr_A 29 YFNGGRVLDLFAG-SGGLAIEAVSR---GMSAAVLVEKN-RKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDL 103 (177)
T ss_dssp CCCSCEEEEETCT-TCHHHHHHHHT---TCCEEEEECCC-HHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEE
T ss_pred hcCCCeEEEeCCC-CCHHHHHHHHc---CCCEEEEEECC-HHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCE
Confidence 4567899999997 99999998874 14799999999 999999999997 56568999999999987765678999
Q ss_pred EEEcCCCCCccHHHHHHHHH--hhcCCCCCCEEEEEec
Q 042616 116 VLIDCNIDIDGHKNVFRAAK--ESVMHGSGAGVIVGYN 151 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~--~~~~L~~~Ggviv~dN 151 (220)
|+.|.+.....+.+.++.+. +. |+| ||++++..
T Consensus 104 i~~~~~~~~~~~~~~~~~l~~~~~--L~~-gG~l~~~~ 138 (177)
T 2esr_A 104 VFLDPPYAKETIVATIEALAAKNL--LSE-QVMVVCET 138 (177)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTTC--EEE-EEEEEEEE
T ss_pred EEECCCCCcchHHHHHHHHHhCCC--cCC-CcEEEEEE
Confidence 99998741145567777776 55 776 88877753
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-13 Score=106.44 Aligned_cols=117 Identities=14% Similarity=0.081 Sum_probs=92.5
Q ss_pred hHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhh
Q 042616 27 DVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQK 104 (220)
Q Consensus 27 ~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~ 104 (220)
+..+.+.......+..+|||+||| +|..++.++...+ +.+|+++|.+ +.+++.|+++++ ++.+++ ++++|+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~~~--~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~-~~~~d~~~ 86 (178)
T 3hm2_A 12 HVRALAISALAPKPHETLWDIGGG-SGSIAIEWLRSTP--QTTAVCFEIS-EERRERILSNAINLGVSDRI-AVQQGAPR 86 (178)
T ss_dssp HHHHHHHHHHCCCTTEEEEEESTT-TTHHHHHHHTTSS--SEEEEEECSC-HHHHHHHHHHHHTTTCTTSE-EEECCTTG
T ss_pred HHHHHHHHHhcccCCCeEEEeCCC-CCHHHHHHHHHCC--CCeEEEEeCC-HHHHHHHHHHHHHhCCCCCE-EEecchHh
Confidence 344444444466677899999997 8999999998753 6899999999 999999999987 665589 99999988
Q ss_pred hhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 105 LLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.++...++||+||++... .. ..+++.+.+. |+| ||.+++.....
T Consensus 87 ~~~~~~~~~D~i~~~~~~--~~-~~~l~~~~~~--L~~-gG~l~~~~~~~ 130 (178)
T 3hm2_A 87 AFDDVPDNPDVIFIGGGL--TA-PGVFAAAWKR--LPV-GGRLVANAVTV 130 (178)
T ss_dssp GGGGCCSCCSEEEECC-T--TC-TTHHHHHHHT--CCT-TCEEEEEECSH
T ss_pred hhhccCCCCCEEEECCcc--cH-HHHHHHHHHh--cCC-CCEEEEEeecc
Confidence 777644789999998877 33 6788999998 876 88887765543
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=115.26 Aligned_cols=116 Identities=15% Similarity=-0.010 Sum_probs=91.2
Q ss_pred HHHHHHHh--hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAA--GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~--~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~ 107 (220)
.++.+++. ..++.+||||||| +|+++.+|++.. ..+|++||++ |.+++.|+++.+....+++++.+|+.+.++
T Consensus 48 ~~m~~~a~~~~~~G~rVLdiG~G-~G~~~~~~~~~~---~~~v~~id~~-~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~ 122 (236)
T 3orh_A 48 PYMHALAAAASSKGGRVLEVGFG-MAIAASKVQEAP---IDEHWIIECN-DGVFQRLRDWAPRQTHKVIPLKGLWEDVAP 122 (236)
T ss_dssp HHHHHHHHHHTTTCEEEEEECCT-TSHHHHHHTTSC---EEEEEEEECC-HHHHHHHHHHGGGCSSEEEEEESCHHHHGG
T ss_pred HHHHHHHHhhccCCCeEEEECCC-ccHHHHHHHHhC---CcEEEEEeCC-HHHHHHHHHHHhhCCCceEEEeehHHhhcc
Confidence 34444443 3456899999997 999999988642 4689999999 999999999987444679999999999876
Q ss_pred hc-CCCccEEEEcCCCC------CccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 108 GD-YRGADFVLIDCNID------IDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 108 ~~-~~~~D~VfiD~~k~------~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+ .++||.|+.|.... ..+...+++.+.+. |+| ||++++.|..
T Consensus 123 ~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rv--LkP-GG~l~f~~~~ 172 (236)
T 3orh_A 123 TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRL--LKP-GGVLTYCNLT 172 (236)
T ss_dssp GSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHH--EEE-EEEEEECCHH
T ss_pred cccccCCceEEEeeeecccchhhhcchhhhhhhhhhe--eCC-CCEEEEEecC
Confidence 65 46899999997541 13456788899998 886 9999998754
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=116.40 Aligned_cols=133 Identities=12% Similarity=0.062 Sum_probs=105.3
Q ss_pred hhHHHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH
Q 042616 8 NATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKS 87 (220)
Q Consensus 8 ~a~~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~ 87 (220)
..+..|.+.+......+.|..+..+...+...+..+|||+||| +|..++.|+..+.+ +++|+++|.+ +++++.|+++
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~VLDiG~G-~G~~~~~la~~~~~-~~~v~~vD~s-~~~~~~a~~~ 156 (277)
T 1o54_A 80 PSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVG-SGAMCAVLARAVGS-SGKVFAYEKR-EEFAKLAESN 156 (277)
T ss_dssp CCHHHHHHTCCC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCT-TSHHHHHHHHHTTT-TCEEEEECCC-HHHHHHHHHH
T ss_pred CCHHHHHhhccccCCccCHHHHHHHHHHhCCCCCCEEEEECCc-CCHHHHHHHHHhCC-CcEEEEEECC-HHHHHHHHHH
Confidence 3445666666666666777777777777777888999999997 89999999988654 6899999999 9999999999
Q ss_pred hc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 88 LG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 88 l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
++ ++.++++++++|+.+.++. ++||+||+|.+. ...+++.+.+. |+| ||.+++...
T Consensus 157 ~~~~~~~~~v~~~~~d~~~~~~~--~~~D~V~~~~~~----~~~~l~~~~~~--L~p-gG~l~~~~~ 214 (277)
T 1o54_A 157 LTKWGLIERVTIKVRDISEGFDE--KDVDALFLDVPD----PWNYIDKCWEA--LKG-GGRFATVCP 214 (277)
T ss_dssp HHHTTCGGGEEEECCCGGGCCSC--CSEEEEEECCSC----GGGTHHHHHHH--EEE-EEEEEEEES
T ss_pred HHHcCCCCCEEEEECCHHHcccC--CccCEEEECCcC----HHHHHHHHHHH--cCC-CCEEEEEeC
Confidence 97 5556899999999887543 679999998754 34678888888 876 777776543
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.45 E-value=7.7e-13 Score=108.77 Aligned_cols=105 Identities=10% Similarity=-0.007 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+..+|||+||| +|..++.++... ..+|++||.+ +++++.|+++++ ++ ++++++++|+.+.++...+.||+|
T Consensus 53 ~~~~~vLDlgcG-~G~~~~~l~~~~---~~~V~~vD~s-~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V 126 (202)
T 2fpo_A 53 IVDAQCLDCFAG-SGALGLEALSRY---AAGATLIEMD-RAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIV 126 (202)
T ss_dssp HTTCEEEETTCT-TCHHHHHHHHTT---CSEEEEECSC-HHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEE
T ss_pred cCCCeEEEeCCC-cCHHHHHHHhcC---CCEEEEEECC-HHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEE
Confidence 367899999997 999999877541 3599999999 999999999997 55 689999999999886545689999
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+|.+-....+.+.++.+.+..+|+| ||++++.
T Consensus 127 ~~~~p~~~~~~~~~l~~l~~~~~L~p-gG~l~i~ 159 (202)
T 2fpo_A 127 FVDPPFRRGLLEETINLLEDNGWLAD-EALIYVE 159 (202)
T ss_dssp EECCSSSTTTHHHHHHHHHHTTCEEE-EEEEEEE
T ss_pred EECCCCCCCcHHHHHHHHHhcCccCC-CcEEEEE
Confidence 99988322577888888876212665 8877665
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.4e-13 Score=109.14 Aligned_cols=104 Identities=11% Similarity=0.041 Sum_probs=82.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccC-CcEEEEEcchhhhhhhc-CCC-c
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYA-NCIEFVKGDAQKLLMGD-YRG-A 113 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~-~~Ve~v~gda~~~L~~~-~~~-~ 113 (220)
.+..+|||+||| +|..++.++.. ..++|++||.+ +++++.|+++++ ++. ++++++++|+.+.++.+ .++ |
T Consensus 52 ~~~~~vLDlGcG-tG~~~~~~~~~---~~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~f 126 (201)
T 2ift_A 52 IHQSECLDGFAG-SGSLGFEALSR---QAKKVTFLELD-KTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHF 126 (201)
T ss_dssp HTTCEEEETTCT-TCHHHHHHHHT---TCSEEEEECSC-HHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCE
T ss_pred cCCCeEEEcCCc-cCHHHHHHHHc---cCCEEEEEECC-HHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCC
Confidence 367899999997 99999986653 13699999999 999999999997 553 68999999999987653 467 9
Q ss_pred cEEEEcCCCCCccHHHHHHHHH--hhcCCCCCCEEEEEe
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAK--ESVMHGSGAGVIVGY 150 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~--~~~~L~~~Ggviv~d 150 (220)
|+||+|.+-....+.+.++.+. +. |+| ||++++.
T Consensus 127 D~I~~~~~~~~~~~~~~l~~~~~~~~--Lkp-gG~l~i~ 162 (201)
T 2ift_A 127 DVVFLDPPFHFNLAEQAISLLCENNW--LKP-NALIYVE 162 (201)
T ss_dssp EEEEECCCSSSCHHHHHHHHHHHTTC--EEE-EEEEEEE
T ss_pred CEEEECCCCCCccHHHHHHHHHhcCc--cCC-CcEEEEE
Confidence 9999998832256788888884 44 666 7877664
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=104.55 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=87.8
Q ss_pred hHHHHHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchh
Q 042616 27 DVGEFISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQ 103 (220)
Q Consensus 27 ~~~~~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~ 103 (220)
...+.+...+. ..+.++|||+||| +|..++.++.. ...+|++||.+ +.+++.|+++++ ++.++++++++|+.
T Consensus 30 ~~~~~~~~~l~~~~~~~~vLD~GcG-~G~~~~~~~~~---~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 104 (187)
T 2fhp_A 30 KVKESIFNMIGPYFDGGMALDLYSG-SGGLAIEAVSR---GMDKSICIEKN-FAALKVIKENIAITKEPEKFEVRKMDAN 104 (187)
T ss_dssp HHHHHHHHHHCSCCSSCEEEETTCT-TCHHHHHHHHT---TCSEEEEEESC-HHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred HHHHHHHHHHHhhcCCCCEEEeCCc-cCHHHHHHHHc---CCCEEEEEECC-HHHHHHHHHHHHHhCCCcceEEEECcHH
Confidence 33444433332 3467899999997 99999988762 24799999999 999999999997 55568999999999
Q ss_pred hhhhhc---CCCccEEEEcCCCCCccHHHHHHHH--HhhcCCCCCCEEEEEe
Q 042616 104 KLLMGD---YRGADFVLIDCNIDIDGHKNVFRAA--KESVMHGSGAGVIVGY 150 (220)
Q Consensus 104 ~~L~~~---~~~~D~VfiD~~k~~~~y~~~l~~l--~~~~~L~~~Ggviv~d 150 (220)
+.++.+ .++||+|+.|.+-......+.++.+ .+. |+| ||++++.
T Consensus 105 ~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~--L~~-gG~l~~~ 153 (187)
T 2fhp_A 105 RALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQL--LTN-EAVIVCE 153 (187)
T ss_dssp HHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTC--EEE-EEEEEEE
T ss_pred HHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcc--cCC-CCEEEEE
Confidence 876533 4689999999873125667778877 555 776 8887765
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.8e-13 Score=117.43 Aligned_cols=133 Identities=20% Similarity=0.170 Sum_probs=102.7
Q ss_pred hHHHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHh
Q 042616 9 ATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSL 88 (220)
Q Consensus 9 a~~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l 88 (220)
+...|...++.+..+..|....++..++...+..+|||+||| +|+.++.|+....+ .++|+++|.+ +.+++.|++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~g~~VLDiG~G-~G~~~~~la~~~g~-~~~v~~vD~~-~~~~~~a~~~~ 150 (336)
T 2b25_A 74 ALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSG-SGGMSLFLSKAVGS-QGRVISFEVR-KDHHDLAKKNY 150 (336)
T ss_dssp CHHHHHHHSCCSSCCCCHHHHHHHHHHHTCCTTCEEEEECCT-TSHHHHHHHHHHCT-TCEEEEEESS-HHHHHHHHHHH
T ss_pred CHHHHhhhhcCCCcccCHHHHHHHHHhcCCCCCCEEEEeCCC-cCHHHHHHHHHhCC-CceEEEEeCC-HHHHHHHHHHH
Confidence 345676667777778888877777667678888999999997 89999999987644 5899999999 99999999998
Q ss_pred c--c----------cCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 89 G--R----------YANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 89 ~--g----------~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
. + +.++|+++++|+.+.++.+ .++||+||+|... +...++.+.+. |+| ||.+++..
T Consensus 151 ~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~----~~~~l~~~~~~--Lkp-gG~lv~~~ 219 (336)
T 2b25_A 151 KHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLN----PHVTLPVFYPH--LKH-GGVCAVYV 219 (336)
T ss_dssp HHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSSS----TTTTHHHHGGG--EEE-EEEEEEEE
T ss_pred HHhhcccccccccccCCceEEEECChHHcccccCCCCeeEEEECCCC----HHHHHHHHHHh--cCC-CcEEEEEe
Confidence 6 2 2368999999998865332 3579999998765 33478888888 876 88877643
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-12 Score=102.25 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=97.9
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
...+...+++...+...+..+|||+||| +|..++.++.. ..+|+++|.+ +.+++.|+++++ ++.++++++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~----~~~v~~~D~~-~~~~~~a~~~~~~~~~~~~~~~~~~ 89 (192)
T 1l3i_A 16 PTAMEVRCLIMCLAEPGKNDVAVDVGCG-TGGVTLELAGR----VRRVYAIDRN-PEAISTTEMNLQRHGLGDNVTLMEG 89 (192)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCT-TSHHHHHHHTT----SSEEEEEESC-HHHHHHHHHHHHHTTCCTTEEEEES
T ss_pred CChHHHHHHHHHhcCCCCCCEEEEECCC-CCHHHHHHHHh----cCEEEEEECC-HHHHHHHHHHHHHcCCCcceEEEec
Confidence 4556667777777777888999999997 89999988875 3799999999 999999999987 55568999999
Q ss_pred chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+.+.++. .+.||+|+.+... ......++.+.+. |+| ||.++....
T Consensus 90 d~~~~~~~-~~~~D~v~~~~~~--~~~~~~l~~~~~~--l~~-gG~l~~~~~ 135 (192)
T 1l3i_A 90 DAPEALCK-IPDIDIAVVGGSG--GELQEILRIIKDK--LKP-GGRIIVTAI 135 (192)
T ss_dssp CHHHHHTT-SCCEEEEEESCCT--TCHHHHHHHHHHT--EEE-EEEEEEEEC
T ss_pred CHHHhccc-CCCCCEEEECCch--HHHHHHHHHHHHh--cCC-CcEEEEEec
Confidence 99886654 3589999999887 6789999999998 876 888777544
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-12 Score=109.26 Aligned_cols=130 Identities=17% Similarity=0.144 Sum_probs=104.2
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc
Q 042616 10 TKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG 89 (220)
Q Consensus 10 ~~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~ 89 (220)
...|...+......+.|.....+..++...+..+|||+||| +|..++.|+..+.+ +++|+++|.+ +.+++.|+++++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~~~v~~~D~~-~~~~~~a~~~~~ 142 (258)
T 2pwy_A 66 LEEYLLHMKRSATPTYPKDASAMVTLLDLAPGMRVLEAGTG-SGGLTLFLARAVGE-KGLVESYEAR-PHHLAQAERNVR 142 (258)
T ss_dssp HHHHHHHSCCSSCCCCHHHHHHHHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCT-TSEEEEEESC-HHHHHHHHHHHH
T ss_pred HHHHhhcCccccccccchHHHHHHHHcCCCCCCEEEEECCC-cCHHHHHHHHHhCC-CCEEEEEeCC-HHHHHHHHHHHH
Confidence 44677777767777788777777777777888999999997 89999999998654 6899999999 999999999986
Q ss_pred cc--CCcEEEEEcchhhh-hhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 90 RY--ANCIEFVKGDAQKL-LMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 90 g~--~~~Ve~v~gda~~~-L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
.. .++++++++|+.+. ++ .++||+|++|.+. ....++.+.+. |+| ||.+++..
T Consensus 143 ~~~g~~~v~~~~~d~~~~~~~--~~~~D~v~~~~~~----~~~~l~~~~~~--L~~-gG~l~~~~ 198 (258)
T 2pwy_A 143 AFWQVENVRFHLGKLEEAELE--EAAYDGVALDLME----PWKVLEKAALA--LKP-DRFLVAYL 198 (258)
T ss_dssp HHCCCCCEEEEESCGGGCCCC--TTCEEEEEEESSC----GGGGHHHHHHH--EEE-EEEEEEEE
T ss_pred HhcCCCCEEEEECchhhcCCC--CCCcCEEEECCcC----HHHHHHHHHHh--CCC-CCEEEEEe
Confidence 22 46899999999886 43 3679999998754 44678888888 876 77766643
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=9.8e-13 Score=105.40 Aligned_cols=112 Identities=9% Similarity=0.020 Sum_probs=83.6
Q ss_pred HHHHHHHHhh--CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhh
Q 042616 29 GEFISALAAG--NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQK 104 (220)
Q Consensus 29 ~~~L~~La~~--~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~ 104 (220)
.++...+... .+..+|||+||| +|+.|+.|+.. +++|++||.+ +++++.|+++++ ++ +++++++++..+
T Consensus 9 ~~~~~~~l~~~~~~~~~vLDiGcG-~G~~~~~la~~----~~~v~~vD~s-~~~l~~a~~~~~~~~~-~~v~~~~~~~~~ 81 (185)
T 3mti_A 9 IHMSHDFLAEVLDDESIVVDATMG-NGNDTAFLAGL----SKKVYAFDVQ-EQALGKTSQRLSDLGI-ENTELILDGHEN 81 (185)
T ss_dssp HHHHHHHHHTTCCTTCEEEESCCT-TSHHHHHHHTT----SSEEEEEESC-HHHHHHHHHHHHHHTC-CCEEEEESCGGG
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCC-CCHHHHHHHHh----CCEEEEEECC-HHHHHHHHHHHHHcCC-CcEEEEeCcHHH
Confidence 3444444443 356899999997 99999999874 6899999999 999999999997 66 789999988877
Q ss_pred hhhhcCCCccEEEEcC-CCC---------CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 105 LLMGDYRGADFVLIDC-NID---------IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~-~k~---------~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.+...++||+|+.+. ... .......++.+.+. |+| ||.+++-
T Consensus 82 l~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~l~i~ 134 (185)
T 3mti_A 82 LDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDR--LEV-GGRLAIM 134 (185)
T ss_dssp GGGTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred HHhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHh--cCC-CcEEEEE
Confidence 5433356899999883 110 02335677888888 887 7776653
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.4e-13 Score=108.16 Aligned_cols=112 Identities=12% Similarity=0.020 Sum_probs=90.9
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
...|...+.+..++...+..+||||||| +|+.++.|+.. +++|+++|.+ +++++.|+++++ ++ .+++++++
T Consensus 60 ~~~~~~~~~~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~----~~~v~~vD~~-~~~~~~a~~~~~~~~~-~~v~~~~~ 132 (210)
T 3lbf_A 60 ISQPYMVARMTELLELTPQSRVLEIGTG-SGYQTAILAHL----VQHVCSVERI-KGLQWQARRRLKNLDL-HNVSTRHG 132 (210)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEECCT-TSHHHHHHHHH----SSEEEEEESC-HHHHHHHHHHHHHTTC-CSEEEEES
T ss_pred eCCHHHHHHHHHhcCCCCCCEEEEEcCC-CCHHHHHHHHh----CCEEEEEecC-HHHHHHHHHHHHHcCC-CceEEEEC
Confidence 4467777777777777888999999997 99999999986 6899999999 999999999997 55 47999999
Q ss_pred chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+.+.++. .++||+|+++... ..+. +.+.+. |+| ||.+++.
T Consensus 133 d~~~~~~~-~~~~D~i~~~~~~--~~~~---~~~~~~--L~p-gG~lv~~ 173 (210)
T 3lbf_A 133 DGWQGWQA-RAPFDAIIVTAAP--PEIP---TALMTQ--LDE-GGILVLP 173 (210)
T ss_dssp CGGGCCGG-GCCEEEEEESSBC--SSCC---THHHHT--EEE-EEEEEEE
T ss_pred CcccCCcc-CCCccEEEEccch--hhhh---HHHHHh--ccc-CcEEEEE
Confidence 99886644 5789999999877 4443 345666 766 8877664
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=106.29 Aligned_cols=108 Identities=16% Similarity=0.083 Sum_probs=86.5
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
...+..+|||+||| +|..++.|+....+ .++|+++|.+ +.+++.|+++++ ++.++++++++|+.+......++||
T Consensus 19 ~~~~~~~vLDlGcG-~G~~~~~l~~~~~~-~~~v~~vD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD 95 (197)
T 3eey_A 19 FVKEGDTVVDATCG-NGNDTAFLASLVGE-NGRVFGFDIQ-DKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVK 95 (197)
T ss_dssp HCCTTCEEEESCCT-TSHHHHHHHHHHCT-TCEEEEECSC-HHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEE
T ss_pred cCCCCCEEEEcCCC-CCHHHHHHHHHhCC-CCEEEEEECC-HHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCce
Confidence 34566899999997 99999999998754 5799999999 999999999997 5557899999999887544457899
Q ss_pred EEEEcCCC----------CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 115 FVLIDCNI----------DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 115 ~VfiD~~k----------~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+|+.|..- ...++..+++.+.+. |+| ||.+++-
T Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--Lk~-gG~l~~~ 138 (197)
T 3eey_A 96 AVMFNLGYLPSGDHSISTRPETTIQALSKAMEL--LVT-GGIITVV 138 (197)
T ss_dssp EEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred EEEEcCCcccCcccccccCcccHHHHHHHHHHh--CcC-CCEEEEE
Confidence 99998622 002456789999998 886 7776654
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-12 Score=115.19 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=93.2
Q ss_pred HHHHHHHh--hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc-CCcEEEEEcch
Q 042616 30 EFISALAA--GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY-ANCIEFVKGDA 102 (220)
Q Consensus 30 ~~L~~La~--~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~-~~~Ve~v~gda 102 (220)
++|..++. ..++++||||||| +|..+..|++.. + ..+|++||++ +.+++.|++++. ++ ..+++++++|+
T Consensus 108 e~L~~l~l~~~~~~~~VLdIG~G-~G~~a~~la~~~-~-~~~V~~VDis-~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~ 183 (334)
T 1xj5_A 108 EMITHLPLCSIPNPKKVLVIGGG-DGGVLREVARHA-S-IEQIDMCEID-KMVVDVSKQFFPDVAIGYEDPRVNLVIGDG 183 (334)
T ss_dssp HHHHHHHHTTSSCCCEEEEETCS-SSHHHHHHTTCT-T-CCEEEEEESC-HHHHHHHHHHCHHHHGGGGSTTEEEEESCH
T ss_pred HHHHHHHHhhCCCCCEEEEECCC-ccHHHHHHHHcC-C-CCEEEEEECC-HHHHHHHHHHHHhhccccCCCcEEEEECCH
Confidence 44544432 3578999999997 999999998742 2 5899999999 999999999985 34 46899999999
Q ss_pred hhhhhhc-CCCccEEEEcCCCCC--cc---HHHHHHHHHhhcCCCCCCEEEEEe-cCCCCC
Q 042616 103 QKLLMGD-YRGADFVLIDCNIDI--DG---HKNVFRAAKESVMHGSGAGVIVGY-NALPKG 156 (220)
Q Consensus 103 ~~~L~~~-~~~~D~VfiD~~k~~--~~---y~~~l~~l~~~~~L~~~Ggviv~d-Nv~~~g 156 (220)
.+.++.. .++||+||+|+.... .. +.++++.+.+. |+| ||+++++ +..+.+
T Consensus 184 ~~~l~~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~--Lkp-gG~lv~~~~~~~~~ 241 (334)
T 1xj5_A 184 VAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARA--LRP-GGVVCTQAESLWLH 241 (334)
T ss_dssp HHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHH--EEE-EEEEEEECCCTTTC
T ss_pred HHHHHhccCCCccEEEECCCCccCcchhhhHHHHHHHHHHh--cCC-CcEEEEecCCcccc
Confidence 9988654 368999999986311 11 47899999999 876 9999986 555543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-12 Score=110.46 Aligned_cols=118 Identities=12% Similarity=0.213 Sum_probs=89.9
Q ss_pred HHHHHHHHHh--hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchh
Q 042616 28 VGEFISALAA--GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQ 103 (220)
Q Consensus 28 ~~~~L~~La~--~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~ 103 (220)
.-+++..|+. ..+..+|||+||| +|..++.|++.....+.+|++||++ +.+++.||++++ +...+|+++++|+.
T Consensus 56 ~~~~i~~l~~~~~~~~~~vLDlGcG-tG~~~~~la~~~~~~~~~v~gvD~s-~~ml~~A~~~~~~~~~~~~v~~~~~D~~ 133 (261)
T 4gek_A 56 IISMIGMLAERFVQPGTQVYDLGCS-LGAATLSVRRNIHHDNCKIIAIDNS-PAMIERCRRHIDAYKAPTPVDVIEGDIR 133 (261)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETCT-TTHHHHHHHHTCCSSSCEEEEEESC-HHHHHHHHHHHHTSCCSSCEEEEESCTT
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCC-CCHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHHHHhhccCceEEEeecccc
Confidence 3445555555 3466899999997 9999999999877657899999999 999999999987 56678999999998
Q ss_pred hhhhhcCCCccEEEEcCCCC---CccHHHHHHHHHhhcCCCCCCEEEE-EecCC
Q 042616 104 KLLMGDYRGADFVLIDCNID---IDGHKNVFRAAKESVMHGSGAGVIV-GYNAL 153 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k~---~~~y~~~l~~l~~~~~L~~~Ggviv-~dNv~ 153 (220)
++ | .++||+|++-.... ..+...+++.+.+. |+| ||+++ .+...
T Consensus 134 ~~-~--~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~--Lkp-GG~lii~e~~~ 181 (261)
T 4gek_A 134 DI-A--IENASMVVLNFTLQFLEPSERQALLDKIYQG--LNP-GGALVLSEKFS 181 (261)
T ss_dssp TC-C--CCSEEEEEEESCGGGSCHHHHHHHHHHHHHH--EEE-EEEEEEEEEBC
T ss_pred cc-c--ccccccceeeeeeeecCchhHhHHHHHHHHH--cCC-CcEEEEEeccC
Confidence 73 3 36799998765430 02335679999999 987 66655 44443
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-12 Score=111.11 Aligned_cols=130 Identities=15% Similarity=0.126 Sum_probs=102.9
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcc
Q 042616 11 KAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGR 90 (220)
Q Consensus 11 ~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g 90 (220)
..|...++.....+.|.....+...+...+..+|||+||| +|..++.|+..+.+ +++|+++|.+ +++++.|+++++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~~~v~~vD~~-~~~~~~a~~~~~~ 146 (280)
T 1i9g_A 70 VDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGP-AGQVISYEQR-ADHAEHARRNVSG 146 (280)
T ss_dssp HHHHTTSCSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCT-TSEEEEECSC-HHHHHHHHHHHHH
T ss_pred HHHHhhccccceeecHHHHHHHHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCC-CCEEEEEeCC-HHHHHHHHHHHHH
Confidence 4566566666667788777777777777788899999997 99999999987654 6899999999 9999999999862
Q ss_pred ----cCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 91 ----YANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 91 ----~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+.++++++++|+.+.. ...++||+||+|... ...+++.+.+. |+| ||.+++..
T Consensus 147 ~~g~~~~~v~~~~~d~~~~~-~~~~~~D~v~~~~~~----~~~~l~~~~~~--L~p-gG~l~~~~ 203 (280)
T 1i9g_A 147 CYGQPPDNWRLVVSDLADSE-LPDGSVDRAVLDMLA----PWEVLDAVSRL--LVA-GGVLMVYV 203 (280)
T ss_dssp HHTSCCTTEEEECSCGGGCC-CCTTCEEEEEEESSC----GGGGHHHHHHH--EEE-EEEEEEEE
T ss_pred hcCCCCCcEEEEECchHhcC-CCCCceeEEEECCcC----HHHHHHHHHHh--CCC-CCEEEEEe
Confidence 2478999999998752 114679999998764 44678888888 876 78777643
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-12 Score=111.25 Aligned_cols=132 Identities=13% Similarity=0.102 Sum_probs=99.5
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---cc--------CCcEEEEEcchhhh
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---RY--------ANCIEFVKGDAQKL 105 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---g~--------~~~Ve~v~gda~~~ 105 (220)
...++++||||||| +|..+..+++. + .++|++||.| +..++.|+++++ ++ ..+++++++|+.+.
T Consensus 72 ~~~~~~~VLdiG~G-~G~~~~~l~~~-~--~~~v~~vDid-~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~ 146 (281)
T 1mjf_A 72 AHPKPKRVLVIGGG-DGGTVREVLQH-D--VDEVIMVEID-EDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF 146 (281)
T ss_dssp HSSCCCEEEEEECT-TSHHHHHHTTS-C--CSEEEEEESC-HHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH
T ss_pred hCCCCCeEEEEcCC-cCHHHHHHHhC-C--CCEEEEEECC-HHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHH
Confidence 44678999999996 99999988875 2 6899999999 999999999982 22 36799999999998
Q ss_pred hhhcCCCccEEEEcCCCCC----cc-HHHHHHHHHhhcCCCCCCEEEEEecCC--CCCC------------cc--ceEEE
Q 042616 106 LMGDYRGADFVLIDCNIDI----DG-HKNVFRAAKESVMHGSGAGVIVGYNAL--PKGS------------WR--GYKTH 164 (220)
Q Consensus 106 L~~~~~~~D~VfiD~~k~~----~~-y~~~l~~l~~~~~L~~~Ggviv~dNv~--~~g~------------~~--~~~s~ 164 (220)
++. .++||+|++|..... .. ..++++.+.+. |+| ||++++.... .... |. .+.++
T Consensus 147 l~~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~--L~p-gG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~ 222 (281)
T 1mjf_A 147 IKN-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDA--LNN-PGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSF 222 (281)
T ss_dssp HHH-CCCEEEEEEECCCCC-----TTSHHHHHHHHHH--EEE-EEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred hcc-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHh--cCC-CcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEE
Confidence 876 678999999987310 22 47889999998 876 9998886322 1110 11 45667
Q ss_pred eeecCCc---EEEEEE
Q 042616 165 FLPIGEG---LLVTRI 177 (220)
Q Consensus 165 ~lPig~G---l~v~~~ 177 (220)
.+|.++| +.++.+
T Consensus 223 ~vP~~~g~~~~~~as~ 238 (281)
T 1mjf_A 223 PVIGYASPWAFLVGVK 238 (281)
T ss_dssp CCTTSSSSEEEEEEEE
T ss_pred ecCCCCceEEEEEeeC
Confidence 7899877 455544
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=108.29 Aligned_cols=116 Identities=15% Similarity=0.060 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL 105 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~ 105 (220)
...++..+....+..+||||||| +|..++.|+...+ ++|+++|++ +.+++.|++++. ++.++++++++|+.+.
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiG~G-~G~~~~~l~~~~~---~~v~~vD~s-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 108 (257)
T 3f4k_A 34 TRKAVSFINELTDDAKIADIGCG-TGGQTLFLADYVK---GQITGIDLF-PDFIEIFNENAVKANCADRVKGITGSMDNL 108 (257)
T ss_dssp HHHHHTTSCCCCTTCEEEEETCT-TSHHHHHHHHHCC---SEEEEEESC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred HHHHHHHHhcCCCCCeEEEeCCC-CCHHHHHHHHhCC---CeEEEEECC-HHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence 34444444445567899999997 9999999998753 499999999 999999999987 7767899999999663
Q ss_pred hhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 106 LMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 106 L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+...++||+|+.......-+....++.+.+. |+| ||.+++.+.
T Consensus 109 -~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~--L~p-gG~l~~~~~ 151 (257)
T 3f4k_A 109 -PFQNEELDLIWSEGAIYNIGFERGMNEWSKY--LKK-GGFIAVSEA 151 (257)
T ss_dssp -SSCTTCEEEEEEESCSCCCCHHHHHHHHHTT--EEE-EEEEEEEEE
T ss_pred -CCCCCCEEEEEecChHhhcCHHHHHHHHHHH--cCC-CcEEEEEEe
Confidence 3324789999988765334678899999998 887 787777654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.7e-12 Score=112.40 Aligned_cols=107 Identities=12% Similarity=0.050 Sum_probs=86.8
Q ss_pred CCCC--EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcchhhhhhhc-CCCcc
Q 042616 39 NNAQ--LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQKLLMGD-YRGAD 114 (220)
Q Consensus 39 ~~a~--~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~~L~~~-~~~~D 114 (220)
-+++ +||||||| .|+.+.+|++..+ +.+|++||+| +++++.||+++. ....+++++++|+.+++... .++||
T Consensus 86 p~p~~~rVLdIG~G-~G~la~~la~~~p--~~~v~~VEid-p~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fD 161 (317)
T 3gjy_A 86 QDASKLRITHLGGG-ACTMARYFADVYP--QSRNTVVELD-AELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRD 161 (317)
T ss_dssp SCGGGCEEEEESCG-GGHHHHHHHHHST--TCEEEEEESC-HHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEE
T ss_pred CCCCCCEEEEEECC-cCHHHHHHHHHCC--CcEEEEEECC-HHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCC
Confidence 3445 99999986 9999999998654 4699999999 999999999997 33468999999999998654 36899
Q ss_pred EEEEcCCCCC----cc-HHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 115 FVLIDCNIDI----DG-HKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 115 ~VfiD~~k~~----~~-y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+||+|..... .. ..++++.+.+. |+| ||++++...
T Consensus 162 vIi~D~~~~~~~~~~L~t~efl~~~~r~--Lkp-gGvlv~~~~ 201 (317)
T 3gjy_A 162 VIIRDVFAGAITPQNFTTVEFFEHCHRG--LAP-GGLYVANCG 201 (317)
T ss_dssp EEEECCSTTSCCCGGGSBHHHHHHHHHH--EEE-EEEEEEEEE
T ss_pred EEEECCCCccccchhhhHHHHHHHHHHh--cCC-CcEEEEEec
Confidence 9999975411 11 17889999999 886 999888654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-12 Score=109.59 Aligned_cols=114 Identities=17% Similarity=0.076 Sum_probs=92.3
Q ss_pred HHHHHHHHHhhC-CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhh
Q 042616 28 VGEFISALAAGN-NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQK 104 (220)
Q Consensus 28 ~~~~L~~La~~~-~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~ 104 (220)
.+.+|..++... +..+|||+||| +|..++.|+... .++|++||.+ +.+++.|++++. ++.++++++++|+.+
T Consensus 36 d~~ll~~~~~~~~~~~~vLDlG~G-~G~~~~~la~~~---~~~v~gvDi~-~~~~~~a~~n~~~~~~~~~v~~~~~D~~~ 110 (259)
T 3lpm_A 36 DAVLLAKFSYLPIRKGKIIDLCSG-NGIIPLLLSTRT---KAKIVGVEIQ-ERLADMAKRSVAYNQLEDQIEIIEYDLKK 110 (259)
T ss_dssp HHHHHHHHCCCCSSCCEEEETTCT-TTHHHHHHHTTC---CCEEEEECCS-HHHHHHHHHHHHHTTCTTTEEEECSCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEcCCc-hhHHHHHHHHhc---CCcEEEEECC-HHHHHHHHHHHHHCCCcccEEEEECcHHH
Confidence 377888888777 78999999997 999999888752 3499999999 999999999997 777789999999999
Q ss_pred hhhhc-CCCccEEEEcCCCCC---------------------ccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 105 LLMGD-YRGADFVLIDCNIDI---------------------DGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 105 ~L~~~-~~~~D~VfiD~~k~~---------------------~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
..+.+ .++||+|+.|.+-.. ..+..+++.+.+. |+| ||.+++
T Consensus 111 ~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~--Lkp-gG~l~~ 174 (259)
T 3lpm_A 111 ITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASL--LKQ-GGKANF 174 (259)
T ss_dssp GGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHH--EEE-EEEEEE
T ss_pred hhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHH--ccC-CcEEEE
Confidence 77544 478999999865200 1245788999998 886 777666
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-12 Score=113.31 Aligned_cols=128 Identities=13% Similarity=0.101 Sum_probs=98.6
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----c-c-CCcEEEEEcchhhhhhhcC
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----R-Y-ANCIEFVKGDAQKLLMGDY 110 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g-~-~~~Ve~v~gda~~~L~~~~ 110 (220)
...++++||||||| +|..+..+++.. ...+|++||+| +.+++.|++++. + + ..+++++++|+.+.++...
T Consensus 74 ~~~~~~~VLdiG~G-~G~~~~~l~~~~--~~~~v~~vDid-~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~ 149 (314)
T 1uir_A 74 THPEPKRVLIVGGG-EGATLREVLKHP--TVEKAVMVDID-GELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTE 149 (314)
T ss_dssp HSSCCCEEEEEECT-TSHHHHHHTTST--TCCEEEEEESC-HHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCC
T ss_pred cCCCCCeEEEEcCC-cCHHHHHHHhcC--CCCEEEEEECC-HHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcC
Confidence 34578999999996 999999888742 26799999999 999999999985 2 3 4689999999999887656
Q ss_pred CCccEEEEcCCCCCcc----------HHHHHHHHHhhcCCCCCCEEEEEecCC---CCC------------Ccc--ceEE
Q 042616 111 RGADFVLIDCNIDIDG----------HKNVFRAAKESVMHGSGAGVIVGYNAL---PKG------------SWR--GYKT 163 (220)
Q Consensus 111 ~~~D~VfiD~~k~~~~----------y~~~l~~l~~~~~L~~~Ggviv~dNv~---~~g------------~~~--~~~s 163 (220)
++||+|++|... .. ..++++.+.+. |+| ||++++.... .+. .|. .+.+
T Consensus 150 ~~fD~Ii~d~~~--~~~~~~~~~~l~~~~~l~~~~~~--Lkp-gG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~ 224 (314)
T 1uir_A 150 ERYDVVIIDLTD--PVGEDNPARLLYTVEFYRLVKAH--LNP-GGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYK 224 (314)
T ss_dssp CCEEEEEEECCC--CBSTTCGGGGGSSHHHHHHHHHT--EEE-EEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEE
T ss_pred CCccEEEECCCC--cccccCcchhccHHHHHHHHHHh--cCC-CcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEE
Confidence 789999999876 33 47899999998 886 8888875221 111 121 4566
Q ss_pred EeeecCCcEE
Q 042616 164 HFLPIGEGLL 173 (220)
Q Consensus 164 ~~lPig~Gl~ 173 (220)
+.+|.++|..
T Consensus 225 ~~vP~~~g~~ 234 (314)
T 1uir_A 225 NHIPGFFLNF 234 (314)
T ss_dssp EEEGGGTEEE
T ss_pred EecCCCCCeE
Confidence 7889988743
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-12 Score=107.80 Aligned_cols=120 Identities=10% Similarity=-0.028 Sum_probs=93.9
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
....+...+.+...+...+..+||||||| +|..+..|+... +.+|+++|++ +.+++.|+++++ ++.+++++++
T Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~VLDiGcG-~G~~~~~la~~~---~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~v~~~~ 92 (256)
T 1nkv_A 18 NPFTEEKYATLGRVLRMKPGTRILDLGSG-SGEMLCTWARDH---GITGTGIDMS-SLFTAQAKRRAEELGVSERVHFIH 92 (256)
T ss_dssp SSCCHHHHHHHHHHTCCCTTCEEEEETCT-TCHHHHHHHHHT---CCEEEEEESC-HHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred CCCCHHHHHHHHHhcCCCCCCEEEEECCC-CCHHHHHHHHhc---CCeEEEEeCC-HHHHHHHHHHHHhcCCCcceEEEE
Confidence 44555666666666666778899999997 899999999864 5699999999 999999999986 6767899999
Q ss_pred cchhhhhhhcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 100 GDAQKLLMGDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 100 gda~~~L~~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+|+.+.. . .++||+|+.-... ...+....++.+.+. |+| ||.+++.+
T Consensus 93 ~d~~~~~-~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~--Lkp-gG~l~~~~ 140 (256)
T 1nkv_A 93 NDAAGYV-A-NEKCDVAACVGATWIAGGFAGAEELLAQS--LKP-GGIMLIGE 140 (256)
T ss_dssp SCCTTCC-C-SSCEEEEEEESCGGGTSSSHHHHHHHTTS--EEE-EEEEEEEE
T ss_pred CChHhCC-c-CCCCCEEEECCChHhcCCHHHHHHHHHHH--cCC-CeEEEEec
Confidence 9998854 3 5789999974332 113567889999998 887 77766643
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.9e-12 Score=106.03 Aligned_cols=128 Identities=9% Similarity=-0.013 Sum_probs=100.0
Q ss_pred hhHHHHHHH-HhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHH
Q 042616 8 NATKAYLQA-LKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKK 86 (220)
Q Consensus 8 ~a~~aY~~~-l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~ 86 (220)
.....+.+. +......+.|....++...+...+..+|||+||| +|..++.++.. +++|+++|.+ +++++.|++
T Consensus 58 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~----~~~v~~vD~~-~~~~~~a~~ 131 (248)
T 2yvl_A 58 PTLEEIILLGFERKTQIIYPKDSFYIALKLNLNKEKRVLEFGTG-SGALLAVLSEV----AGEVWTFEAV-EEFYKTAQK 131 (248)
T ss_dssp CCHHHHHHHTSCCSSCCCCHHHHHHHHHHTTCCTTCEEEEECCT-TSHHHHHHHHH----SSEEEEECSC-HHHHHHHHH
T ss_pred CCHHHHHHhcCcCCCCcccchhHHHHHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh----CCEEEEEecC-HHHHHHHHH
Confidence 334455544 3334456778888888777777788999999997 89999999986 5799999999 999999999
Q ss_pred Hhc--ccCCcEEEEEcchhhhh-hhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 87 SLG--RYANCIEFVKGDAQKLL-MGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 87 ~l~--g~~~~Ve~v~gda~~~L-~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++ ++.++++++.+|+.+.. + .++||+||.|.+. ....++.+.+. |+| ||.+++.
T Consensus 132 ~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~~~~----~~~~l~~~~~~--L~~-gG~l~~~ 189 (248)
T 2yvl_A 132 NLKKFNLGKNVKFFNVDFKDAEVP--EGIFHAAFVDVRE----PWHYLEKVHKS--LME-GAPVGFL 189 (248)
T ss_dssp HHHHTTCCTTEEEECSCTTTSCCC--TTCBSEEEECSSC----GGGGHHHHHHH--BCT-TCEEEEE
T ss_pred HHHHcCCCCcEEEEEcChhhcccC--CCcccEEEECCcC----HHHHHHHHHHH--cCC-CCEEEEE
Confidence 986 66578999999998855 3 3679999997654 44678888888 877 6665553
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.3e-12 Score=100.17 Aligned_cols=99 Identities=9% Similarity=-0.017 Sum_probs=79.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc---CCCcc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD---YRGAD 114 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~---~~~~D 114 (220)
+.++|||+||| +|..++.++.. +.+|+++|.+ +++++.|++++. ++ +++++++|+.+.++.. .++||
T Consensus 41 ~~~~vLD~GcG-~G~~~~~l~~~----~~~v~~vD~~-~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D 112 (171)
T 1ws6_A 41 RRGRFLDPFAG-SGAVGLEAASE----GWEAVLVEKD-PEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFT 112 (171)
T ss_dssp TCCEEEEETCS-SCHHHHHHHHT----TCEEEEECCC-HHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeCCC-cCHHHHHHHHC----CCeEEEEeCC-HHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceE
Confidence 77899999997 99999999875 3459999999 999999999997 44 7999999999876543 23799
Q ss_pred EEEEcCCCCCccHHHHHHHHH--hhcCCCCCCEEEEEe
Q 042616 115 FVLIDCNIDIDGHKNVFRAAK--ESVMHGSGAGVIVGY 150 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~--~~~~L~~~Ggviv~d 150 (220)
+|+.|.... ....+.++.+. +. |+| ||++++.
T Consensus 113 ~i~~~~~~~-~~~~~~~~~~~~~~~--L~~-gG~~~~~ 146 (171)
T 1ws6_A 113 VAFMAPPYA-MDLAALFGELLASGL--VEA-GGLYVLQ 146 (171)
T ss_dssp EEEECCCTT-SCTTHHHHHHHHHTC--EEE-EEEEEEE
T ss_pred EEEECCCCc-hhHHHHHHHHHhhcc--cCC-CcEEEEE
Confidence 999997653 45567777777 66 776 7777664
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.7e-12 Score=113.28 Aligned_cols=115 Identities=15% Similarity=0.101 Sum_probs=88.8
Q ss_pred HHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCC-cEEEEEcchhhhh
Q 042616 31 FISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYAN-CIEFVKGDAQKLL 106 (220)
Q Consensus 31 ~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~-~Ve~v~gda~~~L 106 (220)
++..++. ..+.++|||+||| +|..++.+|.. +.+|++||.+ +.+++.|++|++ ++.+ +++++++|+.+++
T Consensus 143 ~l~~~~~~~~~~~~VLDlgcG-tG~~sl~la~~----ga~V~~VD~s-~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l 216 (332)
T 2igt_A 143 WLKNAVETADRPLKVLNLFGY-TGVASLVAAAA----GAEVTHVDAS-KKAIGWAKENQVLAGLEQAPIRWICEDAMKFI 216 (332)
T ss_dssp HHHHHHHHSSSCCEEEEETCT-TCHHHHHHHHT----TCEEEEECSC-HHHHHHHHHHHHHHTCTTSCEEEECSCHHHHH
T ss_pred HHHHHHHhcCCCCcEEEcccc-cCHHHHHHHHc----CCEEEEEECC-HHHHHHHHHHHHHcCCCccceEEEECcHHHHH
Confidence 3455544 3456799999997 99999999873 4599999999 999999999997 6654 5999999999987
Q ss_pred hhc---CCCccEEEEcCCCCC-----------ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 107 MGD---YRGADFVLIDCNIDI-----------DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 107 ~~~---~~~~D~VfiD~~k~~-----------~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+.. ...||+|++|.+.-. ..|.++++.+.+. |+| ||++++.+...
T Consensus 217 ~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~--Lkp-gG~lli~~~~~ 275 (332)
T 2igt_A 217 QREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREI--LSP-KALGLVLTAYS 275 (332)
T ss_dssp HHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHT--BCT-TCCEEEEEECC
T ss_pred HHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHh--cCc-CcEEEEEECCC
Confidence 643 468999999987300 2367888888888 876 88766655443
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.1e-12 Score=108.33 Aligned_cols=131 Identities=10% Similarity=-0.018 Sum_probs=96.4
Q ss_pred hHHHHHHHHhcCCC------CCChhH---HHHHHHHHhh-----CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEe
Q 042616 9 ATKAYLQALKMGKR------GKEPDV---GEFISALAAG-----NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCIL 74 (220)
Q Consensus 9 a~~aY~~~l~~~~~------~~~p~~---~~~L~~La~~-----~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE 74 (220)
..+.|.+.+..... +.+++. -.|+..+... .++.+||||||| +|+.++.||...+ +++|++||
T Consensus 35 ~~~~~~~~l~~~~~~~nl~~i~~~~~~~~~~~~ds~~~l~~~~~~~~~~vLDiG~G-~G~~~i~la~~~~--~~~v~~vD 111 (249)
T 3g89_A 35 AFSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTG-AGFPGLPLKIVRP--ELELVLVD 111 (249)
T ss_dssp HHHHHHHHHHHC----------CHHHHHHHHHHHHHGGGGSSCCCSSCEEEEETCT-TTTTHHHHHHHCT--TCEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCceECCHHHHhhceeeechhhhcccccCCCCEEEEEcCC-CCHHHHHHHHHCC--CCEEEEEE
Confidence 45677777666431 223222 1233333322 357899999997 9999999998764 68999999
Q ss_pred CCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhh--cCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 75 SGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMG--DYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 75 ~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~--~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++ +++++.|+++++ ++ .+|+++++|++++.+. ..++||+|+..+- .++..+++.+.+. |+| ||.+++-
T Consensus 112 ~s-~~~~~~a~~~~~~~~l-~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~---~~~~~ll~~~~~~--Lkp-gG~l~~~ 183 (249)
T 3g89_A 112 AT-RKKVAFVERAIEVLGL-KGARALWGRAEVLAREAGHREAYARAVARAV---APLCVLSELLLPF--LEV-GGAAVAM 183 (249)
T ss_dssp SC-HHHHHHHHHHHHHHTC-SSEEEEECCHHHHTTSTTTTTCEEEEEEESS---CCHHHHHHHHGGG--EEE-EEEEEEE
T ss_pred CC-HHHHHHHHHHHHHhCC-CceEEEECcHHHhhcccccCCCceEEEECCc---CCHHHHHHHHHHH--cCC-CeEEEEE
Confidence 99 999999999997 66 4599999999987542 2368999999875 4678899999998 886 8876653
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-12 Score=108.78 Aligned_cols=115 Identities=15% Similarity=0.083 Sum_probs=90.1
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~ 107 (220)
.++..+....++.+||||||| +|..++.|+.. .+++|++||++ +.+++.|+++++ ++.++++++++|+.+. +
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG-~G~~~~~la~~---~~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~ 109 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCG-TGGQTMVLAGH---VTGQVTGLDFL-SGFIDIFNRNARQSGLQNRVTGIVGSMDDL-P 109 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCT-TCHHHHHHHTT---CSSEEEEEESC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C
T ss_pred HHHHhcccCCCCCEEEEeCCC-CCHHHHHHHhc---cCCEEEEEeCC-HHHHHHHHHHHHHcCCCcCcEEEEcChhhC-C
Confidence 334333334567899999997 99999999875 25799999999 999999999987 7777899999999773 3
Q ss_pred hcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 108 GDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
...++||+|+....-..-+...+++.+.+. |+| ||.+++.+..
T Consensus 110 ~~~~~fD~i~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~l~~~~~~ 152 (267)
T 3kkz_A 110 FRNEELDLIWSEGAIYNIGFERGLNEWRKY--LKK-GGYLAVSECS 152 (267)
T ss_dssp CCTTCEEEEEESSCGGGTCHHHHHHHHGGG--EEE-EEEEEEEEEE
T ss_pred CCCCCEEEEEEcCCceecCHHHHHHHHHHH--cCC-CCEEEEEEee
Confidence 224789999987765223568889999998 886 8887776553
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-12 Score=110.61 Aligned_cols=114 Identities=14% Similarity=0.038 Sum_probs=91.5
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcc
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGD 101 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gd 101 (220)
..+...+.+..+....+.++|||+||| +|..++.||...+ .++|++||.+ +++++.|++|++ ++ ++++++++|
T Consensus 103 ~~~~~~e~~~~~~~~~~~~~VLDlgcG-~G~~s~~la~~~~--~~~V~~vD~s-~~av~~a~~n~~~n~l-~~~~~~~~d 177 (272)
T 3a27_A 103 SQGNIEERKRMAFISNENEVVVDMFAG-IGYFTIPLAKYSK--PKLVYAIEKN-PTAYHYLCENIKLNKL-NNVIPILAD 177 (272)
T ss_dssp CGGGHHHHHHHHTSCCTTCEEEETTCT-TTTTHHHHHHHTC--CSEEEEEECC-HHHHHHHHHHHHHTTC-SSEEEEESC
T ss_pred CCCchHHHHHHHHhcCCCCEEEEecCc-CCHHHHHHHHhCC--CCEEEEEeCC-HHHHHHHHHHHHHcCC-CCEEEEECC
Confidence 344455556555556677899999997 9999999998754 5799999999 999999999997 55 568999999
Q ss_pred hhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.+. +. .+.||+|++|.+. .+.+.++.+.+. |+| ||++++.
T Consensus 178 ~~~~-~~-~~~~D~Vi~d~p~---~~~~~l~~~~~~--Lkp-gG~l~~s 218 (272)
T 3a27_A 178 NRDV-EL-KDVADRVIMGYVH---KTHKFLDKTFEF--LKD-RGVIHYH 218 (272)
T ss_dssp GGGC-CC-TTCEEEEEECCCS---SGGGGHHHHHHH--EEE-EEEEEEE
T ss_pred hHHc-Cc-cCCceEEEECCcc---cHHHHHHHHHHH--cCC-CCEEEEE
Confidence 9987 54 5689999999876 566778888887 876 7776554
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3.4e-12 Score=109.91 Aligned_cols=123 Identities=13% Similarity=0.065 Sum_probs=96.3
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcc
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGD 101 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gd 101 (220)
+......++..++...+..+|||+||| +|..|+.|+..++. .++|+++|.+ +.+++.++++++ ++ .+++++++|
T Consensus 67 ~qd~~s~l~~~~l~~~~g~~VLDlgaG-~G~~t~~la~~~~~-~~~v~avD~~-~~~l~~~~~~~~~~g~-~~v~~~~~D 142 (274)
T 3ajd_A 67 PQSISSMIPPIVLNPREDDFILDMCAA-PGGKTTHLAQLMKN-KGTIVAVEIS-KTRTKALKSNINRMGV-LNTIIINAD 142 (274)
T ss_dssp ECCSGGGHHHHHHCCCTTCEEEETTCT-TCHHHHHHHHHTTT-CSEEEEEESC-HHHHHHHHHHHHHTTC-CSEEEEESC
T ss_pred EeCHHHHHHHHHhCCCCcCEEEEeCCC-ccHHHHHHHHHcCC-CCEEEEECCC-HHHHHHHHHHHHHhCC-CcEEEEeCC
Confidence 444455666667777788999999996 99999999987653 5899999999 999999999997 66 489999999
Q ss_pred hhhhhhhc---CCCccEEEEcCCCCC-------------------ccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 102 AQKLLMGD---YRGADFVLIDCNIDI-------------------DGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 102 a~~~L~~~---~~~~D~VfiD~~k~~-------------------~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+.+..+.. .+.||+|++|++-.. ..+..+++.+.+. |+| ||.++.....
T Consensus 143 ~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~lv~stcs 213 (274)
T 3ajd_A 143 MRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDL--LKK-DGELVYSTCS 213 (274)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHH--EEE-EEEEEEEESC
T ss_pred hHhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHh--CCC-CCEEEEEECC
Confidence 98875421 468999999955311 2347788988888 876 8887775544
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.3e-12 Score=103.25 Aligned_cols=118 Identities=7% Similarity=-0.034 Sum_probs=88.7
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
.+++...++|.......+.++|||+|||.+|..++.|+... +++|+++|.+ +.+++.|+++++ ++ +++++++
T Consensus 38 ~~p~~~~~~l~~~~~~~~~~~vLDlG~G~~G~~~~~la~~~---~~~v~~vD~s-~~~~~~a~~~~~~~~~--~v~~~~~ 111 (230)
T 3evz_A 38 LVTTPISRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFF---NCKVTATEVD-EEFFEYARRNIERNNS--NVRLVKS 111 (230)
T ss_dssp CCCCHHHHHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHH---CCEEEEEECC-HHHHHHHHHHHHHTTC--CCEEEEC
T ss_pred EeCCCchhhhHhHhhcCCCCEEEEcCCCHHHHHHHHHHHhc---CCEEEEEECC-HHHHHHHHHHHHHhCC--CcEEEeC
Confidence 34444567764444456789999999832899999999864 5799999999 999999999997 44 7999999
Q ss_pred chhhhhhhcCCCccEEEEcCCCC--------------------CccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 101 DAQKLLMGDYRGADFVLIDCNID--------------------IDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~--------------------~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|+....+...++||+|+.+.+-. ...+..+++.+.+. |+| ||.+++
T Consensus 112 d~~~~~~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~l~~ 177 (230)
T 3evz_A 112 NGGIIKGVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDH--LNP-GGKVAL 177 (230)
T ss_dssp SSCSSTTTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGG--EEE-EEEEEE
T ss_pred CchhhhhcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHH--hCC-CeEEEE
Confidence 97543322237899999985420 02257889999998 886 888776
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.35 E-value=4.5e-12 Score=111.62 Aligned_cols=127 Identities=9% Similarity=0.039 Sum_probs=99.1
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
+...+....+.++..++...+..+|||+||| +|..|+.||..++. .++|+++|.+ +.+++.++++++ ++ .+|++
T Consensus 98 G~~~~qd~~s~l~~~~l~~~~g~~VLDlg~G-~G~~t~~la~~~~~-~~~v~avD~s-~~~l~~a~~~~~~~g~-~~v~~ 173 (315)
T 1ixk_A 98 GLIYIQEASSMYPPVALDPKPGEIVADMAAA-PGGKTSYLAQLMRN-DGVIYAFDVD-ENRLRETRLNLSRLGV-LNVIL 173 (315)
T ss_dssp TSEEECCHHHHHHHHHHCCCTTCEEEECCSS-CSHHHHHHHHHTTT-CSEEEEECSC-HHHHHHHHHHHHHHTC-CSEEE
T ss_pred ceEEEeCHHHHHHHHHhCCCCCCEEEEeCCC-CCHHHHHHHHHhCC-CCEEEEEcCC-HHHHHHHHHHHHHhCC-CeEEE
Confidence 3344555566777777777888999999996 99999999988764 6899999999 999999999997 66 47999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCC-------c----------------cHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDI-------D----------------GHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~-------~----------------~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+++|+.++.+ ..+.||+|++|++-.. . .+..+++.+.+. |+| ||.+|......
T Consensus 174 ~~~D~~~~~~-~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~--Lkp-GG~lv~stcs~ 249 (315)
T 1ixk_A 174 FHSSSLHIGE-LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEV--LKP-GGILVYSTCSL 249 (315)
T ss_dssp ESSCGGGGGG-GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHH--EEE-EEEEEEEESCC
T ss_pred EECChhhccc-ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHh--CCC-CCEEEEEeCCC
Confidence 9999988653 3568999999976200 0 014778888888 876 88888765543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.2e-12 Score=110.37 Aligned_cols=107 Identities=12% Similarity=0.095 Sum_probs=85.1
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc-CCcEEEEEcchhhhhhhcCCC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY-ANCIEFVKGDAQKLLMGDYRG 112 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~-~~~Ve~v~gda~~~L~~~~~~ 112 (220)
..++++||||||| +|..+..+++..+ .++|++||.| +.+++.|++++. ++ ..+++++++|+.+.++...++
T Consensus 88 ~~~~~~VLdiG~G-~G~~~~~l~~~~~--~~~v~~vDid-~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~ 163 (296)
T 1inl_A 88 HPNPKKVLIIGGG-DGGTLREVLKHDS--VEKAILCEVD-GLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNE 163 (296)
T ss_dssp SSSCCEEEEEECT-TCHHHHHHTTSTT--CSEEEEEESC-HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSC
T ss_pred CCCCCEEEEEcCC-cCHHHHHHHhcCC--CCEEEEEECC-HHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCC
Confidence 4567999999996 8999998886422 5899999999 999999999984 33 468999999999988665578
Q ss_pred ccEEEEcCCCC-Cc-----cHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 113 ADFVLIDCNID-ID-----GHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 113 ~D~VfiD~~k~-~~-----~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
||+|++|.... .. ...++++.+.+. |+| ||++++..
T Consensus 164 fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~--Lkp-gG~lv~~~ 205 (296)
T 1inl_A 164 FDVIIIDSTDPTAGQGGHLFTEEFYQACYDA--LKE-DGVFSAET 205 (296)
T ss_dssp EEEEEEEC----------CCSHHHHHHHHHH--EEE-EEEEEEEC
T ss_pred ceEEEEcCCCcccCchhhhhHHHHHHHHHHh--cCC-CcEEEEEc
Confidence 99999998651 01 237889999998 886 99988863
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.5e-12 Score=105.45 Aligned_cols=116 Identities=6% Similarity=-0.026 Sum_probs=88.2
Q ss_pred CCChhHHHHHHHHH--hhCCCCEEEEEcCCchHHHHHHHHHHcC----CCCcEEEEEeCCchhHHHHHHHHhc--cc---
Q 042616 23 GKEPDVGEFISALA--AGNNAQLIVMACSSIAVSRTLALVAAAR----QTGGRVVCILSGVIGDIDASKKSLG--RY--- 91 (220)
Q Consensus 23 ~~~p~~~~~L~~La--~~~~a~~ILEIGtg~~G~sTl~LA~A~~----~~~grV~tIE~d~~~~~~~Ar~~l~--g~--- 91 (220)
+..|...+.+..++ ...+..+||||||| +|+.++.|+.... + .++|+++|.+ +++++.|+++++ ++
T Consensus 61 ~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G-~G~~~~~la~~~~~~~~~-~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~ 137 (227)
T 2pbf_A 61 ISAPHMHALSLKRLINVLKPGSRAIDVGSG-SGYLTVCMAIKMNVLENK-NSYVIGLERV-KDLVNFSLENIKRDKPELL 137 (227)
T ss_dssp ECCHHHHHHHHHHHTTTSCTTCEEEEESCT-TSHHHHHHHHHTTTTTCT-TCEEEEEESC-HHHHHHHHHHHHHHCGGGG
T ss_pred cCChHHHHHHHHHHHhhCCCCCEEEEECCC-CCHHHHHHHHHhcccCCC-CCEEEEEeCC-HHHHHHHHHHHHHcCcccc
Confidence 34555554444444 35667899999997 8999999998764 3 5799999999 999999999987 42
Q ss_pred -CCcEEEEEcchhhhh----hhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 92 -ANCIEFVKGDAQKLL----MGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 92 -~~~Ve~v~gda~~~L----~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.++++++++|+.+.. +. .++||+|++++.. ... ++.+.+. |+| ||++++.
T Consensus 138 ~~~~v~~~~~d~~~~~~~~~~~-~~~fD~I~~~~~~--~~~---~~~~~~~--Lkp-gG~lv~~ 192 (227)
T 2pbf_A 138 KIDNFKIIHKNIYQVNEEEKKE-LGLFDAIHVGASA--SEL---PEILVDL--LAE-NGKLIIP 192 (227)
T ss_dssp SSTTEEEEECCGGGCCHHHHHH-HCCEEEEEECSBB--SSC---CHHHHHH--EEE-EEEEEEE
T ss_pred ccCCEEEEECChHhcccccCcc-CCCcCEEEECCch--HHH---HHHHHHh--cCC-CcEEEEE
Confidence 368999999998754 22 4689999999887 443 4666776 766 8887764
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-12 Score=111.57 Aligned_cols=127 Identities=9% Similarity=0.046 Sum_probs=88.1
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhccc
Q 042616 12 AYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRY 91 (220)
Q Consensus 12 aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~ 91 (220)
.|+..+......+.|...+++..++...+..+|||+||| +|..++.|+..+.+ +++|+++|.+ +++++.|+++++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLD~G~G-~G~~~~~la~~~~~-~~~v~~vD~s-~~~~~~a~~~~~~~ 158 (275)
T 1yb2_A 82 YFGRVIRRNTQIISEIDASYIIMRCGLRPGMDILEVGVG-SGNMSSYILYALNG-KGTLTVVERD-EDNLKKAMDNLSEF 158 (275)
T ss_dssp GHHHHC------------------CCCCTTCEEEEECCT-TSHHHHHHHHHHTT-SSEEEEECSC-HHHHHHHHHHHHTT
T ss_pred HHHhhccccccccChhhHHHHHHHcCCCCcCEEEEecCC-CCHHHHHHHHHcCC-CCEEEEEECC-HHHHHHHHHHHHhc
Confidence 455555555556666666777777777788999999997 99999999987554 6899999999 99999999998632
Q ss_pred --CCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 92 --ANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 92 --~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.++++++++|+.+.++ .++||+|++|.+. ...+++.+.+. |+| ||.+++.
T Consensus 159 ~g~~~v~~~~~d~~~~~~--~~~fD~Vi~~~~~----~~~~l~~~~~~--Lkp-gG~l~i~ 210 (275)
T 1yb2_A 159 YDIGNVRTSRSDIADFIS--DQMYDAVIADIPD----PWNHVQKIASM--MKP-GSVATFY 210 (275)
T ss_dssp SCCTTEEEECSCTTTCCC--SCCEEEEEECCSC----GGGSHHHHHHT--EEE-EEEEEEE
T ss_pred CCCCcEEEEECchhccCc--CCCccEEEEcCcC----HHHHHHHHHHH--cCC-CCEEEEE
Confidence 3679999999988543 3679999997655 45778889888 876 7776654
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.2e-12 Score=109.27 Aligned_cols=107 Identities=11% Similarity=0.109 Sum_probs=86.1
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc-CCcEEEEEcchhhhhhhcCCC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY-ANCIEFVKGDAQKLLMGDYRG 112 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~-~~~Ve~v~gda~~~L~~~~~~ 112 (220)
..++++||||||| +|..+..+++.. ...+|++||.| ++.++.|++++. ++ ..+++++++|+.+.++...++
T Consensus 73 ~~~~~~VLdiG~G-~G~~~~~l~~~~--~~~~v~~vEid-~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~ 148 (275)
T 1iy9_A 73 HPNPEHVLVVGGG-DGGVIREILKHP--SVKKATLVDID-GKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQ 148 (275)
T ss_dssp SSSCCEEEEESCT-TCHHHHHHTTCT--TCSEEEEEESC-HHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSC
T ss_pred CCCCCEEEEECCc-hHHHHHHHHhCC--CCceEEEEECC-HHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCC
Confidence 3468999999996 899998887531 25799999999 999999999984 34 368999999999988765578
Q ss_pred ccEEEEcCCCCCc----c-HHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 113 ADFVLIDCNIDID----G-HKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 113 ~D~VfiD~~k~~~----~-y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
||+|++|...... . ..++++.+.+. |+| ||++++..
T Consensus 149 fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~--L~p-gG~lv~~~ 189 (275)
T 1iy9_A 149 YDVIMVDSTEPVGPAVNLFTKGFYAGIAKA--LKE-DGIFVAQT 189 (275)
T ss_dssp EEEEEESCSSCCSCCCCCSTTHHHHHHHHH--EEE-EEEEEEEC
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHh--cCC-CcEEEEEc
Confidence 9999999865110 1 26789999998 876 99998874
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.8e-12 Score=104.41 Aligned_cols=116 Identities=15% Similarity=0.003 Sum_probs=86.2
Q ss_pred HHHHHHHHhh--CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhh
Q 042616 29 GEFISALAAG--NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLL 106 (220)
Q Consensus 29 ~~~L~~La~~--~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L 106 (220)
.+++..++.. .+..+||||||| +|..+..|+... ..+|++||.+ +.+++.|+++.+....+++++++|+.+.+
T Consensus 47 ~~~~~~l~~~~~~~~~~vLDiGcG-tG~~~~~l~~~~---~~~v~gvD~s-~~~l~~a~~~~~~~~~~v~~~~~d~~~~~ 121 (236)
T 1zx0_A 47 TPYMHALAAAASSKGGRVLEVGFG-MAIAASKVQEAP---IDEHWIIECN-DGVFQRLRDWAPRQTHKVIPLKGLWEDVA 121 (236)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECCT-TSHHHHHHHTSC---EEEEEEEECC-HHHHHHHHHHGGGCSSEEEEEESCHHHHG
T ss_pred HHHHHHHHhhcCCCCCeEEEEecc-CCHHHHHHHhcC---CCeEEEEcCC-HHHHHHHHHHHHhcCCCeEEEecCHHHhh
Confidence 4444444443 456799999997 999999986531 3489999999 99999999998743368999999999975
Q ss_pred hhc-CCCccEEEEcCCC------CCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 107 MGD-YRGADFVLIDCNI------DIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 107 ~~~-~~~~D~VfiD~~k------~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+.+ .++||+|+.|... .......+++.+.+. |+| ||++++-+.
T Consensus 122 ~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~--Lkp-gG~l~~~~~ 171 (236)
T 1zx0_A 122 PTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRL--LKP-GGVLTYCNL 171 (236)
T ss_dssp GGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHH--EEE-EEEEEECCH
T ss_pred cccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHh--cCC-CeEEEEEec
Confidence 433 3689999995432 012233568889998 886 898887654
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.7e-12 Score=118.06 Aligned_cols=128 Identities=10% Similarity=0.068 Sum_probs=101.5
Q ss_pred cCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEE
Q 042616 19 MGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIE 96 (220)
Q Consensus 19 ~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve 96 (220)
.+...+....++++..++...+..+|||+||| +|..|+.||..++. .|+|+++|++ +.+++.+++|++ |+ .+|+
T Consensus 84 ~G~~~vQd~ss~l~~~~L~~~~g~~VLDlcaG-pGgkt~~lA~~~~~-~g~V~AvDis-~~rl~~~~~n~~r~g~-~nv~ 159 (456)
T 3m4x_A 84 AGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAA-PGGKSTQLAAQMKG-KGLLVTNEIF-PKRAKILSENIERWGV-SNAI 159 (456)
T ss_dssp TTSCEECCTTTHHHHHHHCCCTTCEEEESSCT-TCHHHHHHHHHHTT-CSEEEEECSS-HHHHHHHHHHHHHHTC-SSEE
T ss_pred CCcEEEECHHHHHHHHHcCCCCCCEEEEECCC-cCHHHHHHHHHcCC-CCEEEEEeCC-HHHHHHHHHHHHHcCC-CceE
Confidence 34455666667888888888889999999996 99999999988765 6899999999 999999999997 66 4799
Q ss_pred EEEcchhhhhhhcCCCccEEEEcCCCCC---------------c--------cHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 97 FVKGDAQKLLMGDYRGADFVLIDCNIDI---------------D--------GHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 97 ~v~gda~~~L~~~~~~~D~VfiD~~k~~---------------~--------~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
++++|+.++.+...+.||.|++|++-.. . ...++++.+.+. |+| ||.||.-...
T Consensus 160 v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~--Lkp-GG~LvYsTCs 236 (456)
T 3m4x_A 160 VTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKM--LKN-KGQLIYSTCT 236 (456)
T ss_dssp EECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHT--EEE-EEEEEEEESC
T ss_pred EEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHh--cCC-CcEEEEEEee
Confidence 9999999876444578999999997200 0 112667888887 876 8888865443
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.6e-12 Score=102.14 Aligned_cols=115 Identities=10% Similarity=-0.001 Sum_probs=91.0
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
...|...+.+..++...+..+||||||| +|+.++.|+....+ .++|+++|.+ +.+++.|++++. ++ ++++++++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~~~v~~vD~~-~~~~~~a~~~~~~~~~-~~v~~~~~ 135 (215)
T 2yxe_A 60 ISAIHMVGMMCELLDLKPGMKVLEIGTG-CGYHAAVTAEIVGE-DGLVVSIERI-PELAEKAERTLRKLGY-DNVIVIVG 135 (215)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCT-TSEEEEEESC-HHHHHHHHHHHHHHTC-TTEEEEES
T ss_pred eCcHHHHHHHHHhhCCCCCCEEEEECCC-ccHHHHHHHHHhCC-CCEEEEEeCC-HHHHHHHHHHHHHcCC-CCeEEEEC
Confidence 4567777777777777788999999997 99999999988643 4899999999 999999999987 55 46999999
Q ss_pred chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+.+.++. .++||+|+++... .... +.+.+. |+| ||.+++.
T Consensus 136 d~~~~~~~-~~~fD~v~~~~~~--~~~~---~~~~~~--L~p-gG~lv~~ 176 (215)
T 2yxe_A 136 DGTLGYEP-LAPYDRIYTTAAG--PKIP---EPLIRQ--LKD-GGKLLMP 176 (215)
T ss_dssp CGGGCCGG-GCCEEEEEESSBB--SSCC---HHHHHT--EEE-EEEEEEE
T ss_pred CcccCCCC-CCCeeEEEECCch--HHHH---HHHHHH--cCC-CcEEEEE
Confidence 99765542 4689999999876 4433 466666 776 7777664
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.32 E-value=8.4e-12 Score=103.33 Aligned_cols=103 Identities=11% Similarity=-0.001 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhh--hhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLL--MGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L--~~~~~~~D~V 116 (220)
.+..+|||+||| +|..++.|+..+.+ +++|+++|.+ +.+++.++++++.. .+++++++|+.+.. +...++||+|
T Consensus 72 ~~~~~vLDlG~G-~G~~~~~la~~~~~-~~~v~~vD~s-~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D~v 147 (227)
T 1g8a_A 72 KPGKSVLYLGIA-SGTTASHVSDIVGW-EGKIFGIEFS-PRVLRELVPIVEER-RNIVPILGDATKPEEYRALVPKVDVI 147 (227)
T ss_dssp CTTCEEEEETTT-STTHHHHHHHHHCT-TSEEEEEESC-HHHHHHHHHHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred CCCCEEEEEecc-CCHHHHHHHHHhCC-CeEEEEEECC-HHHHHHHHHHHhcc-CCCEEEEccCCCcchhhcccCCceEE
Confidence 456899999997 89999999988654 6899999999 99999999998744 68999999998732 2234689999
Q ss_pred EEcCCCCCccHHHH-HHHHHhhcCCCCCCEEEEEe
Q 042616 117 LIDCNIDIDGHKNV-FRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 117 fiD~~k~~~~y~~~-l~~l~~~~~L~~~Ggviv~d 150 (220)
+.|... .+.... ++.+.+. |+| ||.+++-
T Consensus 148 ~~~~~~--~~~~~~~l~~~~~~--Lkp-gG~l~~~ 177 (227)
T 1g8a_A 148 FEDVAQ--PTQAKILIDNAEVY--LKR-GGYGMIA 177 (227)
T ss_dssp EECCCS--TTHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred EECCCC--HhHHHHHHHHHHHh--cCC-CCEEEEE
Confidence 999876 555444 8999998 886 8877664
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.32 E-value=7.1e-12 Score=99.67 Aligned_cols=114 Identities=13% Similarity=0.022 Sum_probs=89.3
Q ss_pred hHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCC-cEEEEEcchh
Q 042616 27 DVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYAN-CIEFVKGDAQ 103 (220)
Q Consensus 27 ~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~-~Ve~v~gda~ 103 (220)
...+.+...+...+..+|||+||| +|..++.++.. +.+++++|.+ +.+++.|++++. ++.+ +++++++|+.
T Consensus 39 ~~~~~l~~~~~~~~~~~vLdiG~G-~G~~~~~~~~~----~~~v~~~D~~-~~~~~~a~~~~~~~~~~~~~~~~~~~d~~ 112 (194)
T 1dus_A 39 KGTKILVENVVVDKDDDILDLGCG-YGVIGIALADE----VKSTTMADIN-RRAIKLAKENIKLNNLDNYDIRVVHSDLY 112 (194)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCT-TSHHHHHHGGG----SSEEEEEESC-HHHHHHHHHHHHHTTCTTSCEEEEECSTT
T ss_pred hHHHHHHHHcccCCCCeEEEeCCC-CCHHHHHHHHc----CCeEEEEECC-HHHHHHHHHHHHHcCCCccceEEEECchh
Confidence 345555555566678899999997 99999988875 6799999999 999999999987 5533 4999999998
Q ss_pred hhhhhcCCCccEEEEcCCCCC--ccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 104 KLLMGDYRGADFVLIDCNIDI--DGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k~~--~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+.++ .++||+|+.+..-.. .....+++.+.+. |+| ||.+++..
T Consensus 113 ~~~~--~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~--L~~-gG~l~~~~ 157 (194)
T 1dus_A 113 ENVK--DRKYNKIITNPPIRAGKEVLHRIIEEGKEL--LKD-NGEIWVVI 157 (194)
T ss_dssp TTCT--TSCEEEEEECCCSTTCHHHHHHHHHHHHHH--EEE-EEEEEEEE
T ss_pred cccc--cCCceEEEECCCcccchhHHHHHHHHHHHH--cCC-CCEEEEEE
Confidence 8654 468999999986411 3457888999998 876 77766643
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.9e-12 Score=108.49 Aligned_cols=108 Identities=11% Similarity=0.033 Sum_probs=81.7
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHc------CCCC----cEEEEEeCCch--------------hHHHHHHHHhcc---
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAA------RQTG----GRVVCILSGVI--------------GDIDASKKSLGR--- 90 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~------~~~~----grV~tIE~d~~--------------~~~~~Ar~~l~g--- 90 (220)
..++.+|||||+| +||++++++.+. .+.+ .+++++|.+ | +..+.|+++++.
T Consensus 58 ~~~~~~ILEiGfG-tG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~-p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~ 135 (257)
T 2qy6_A 58 PHPLFVVAESGFG-TGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKF-PLTRADLALAHQHWPELAPWAEQLQAQWPM 135 (257)
T ss_dssp SSSEEEEEESCCT-TSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESS-CCCHHHHHHHHTTCGGGHHHHHHHHHTCCC
T ss_pred CCCCCEEEEECCC-hHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECC-cCCHHHHHHHHhcChhHHHHHHHHHHhccc
Confidence 3456899999996 999999988775 3322 589999999 7 334466666531
Q ss_pred ---------cC---CcEEEEEcchhhhhhhcCC----CccEEEEcCCCC--Ccc--HHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 91 ---------YA---NCIEFVKGDAQKLLMGDYR----GADFVLIDCNID--IDG--HKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 91 ---------~~---~~Ve~v~gda~~~L~~~~~----~~D~VfiD~~k~--~~~--y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+. .+++++.||+.+.|+.+.. .||+||+|+... +.+ +.++|+.+.+. |+| ||++++.
T Consensus 136 ~~~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~--L~p-GG~l~ty 212 (257)
T 2qy6_A 136 PLPGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARL--ARP-GGTLATF 212 (257)
T ss_dssp SCSEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHH--EEE-EEEEEES
T ss_pred cccchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHH--cCC-CcEEEEE
Confidence 22 4588999999999988643 799999998431 122 68899999999 876 9999974
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=9e-12 Score=110.22 Aligned_cols=108 Identities=13% Similarity=0.085 Sum_probs=87.0
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcc----c-CCcEEEEEcchhhhhhhcCC
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGR----Y-ANCIEFVKGDAQKLLMGDYR 111 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g----~-~~~Ve~v~gda~~~L~~~~~ 111 (220)
...++++||||||| +|..+..+++.. ...+|+++|.| +++++.|++++.. + ..+++++++|+.+.++...+
T Consensus 113 ~~~~~~~VLdiG~G-~G~~~~~l~~~~--~~~~v~~vDis-~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 188 (321)
T 2pt6_A 113 VSKEPKNVLVVGGG-DGGIIRELCKYK--SVENIDICEID-ETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTN 188 (321)
T ss_dssp HSSSCCEEEEEECT-TCHHHHHHTTCT--TCCEEEEEESC-HHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCS
T ss_pred cCCCCCEEEEEcCC-ccHHHHHHHHcC--CCCEEEEEECC-HHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCC
Confidence 34578999999996 899999888642 26899999999 9999999999862 3 46799999999998865557
Q ss_pred CccEEEEcCCCC----CccH-HHHHHHHHhhcCCCCCCEEEEEec
Q 042616 112 GADFVLIDCNID----IDGH-KNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 112 ~~D~VfiD~~k~----~~~y-~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+||+|++|.... ...| .++++.+.+. |+| ||++++..
T Consensus 189 ~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~--Lkp-gG~lv~~~ 230 (321)
T 2pt6_A 189 TYDVIIVDSSDPIGPAETLFNQNFYEKIYNA--LKP-NGYCVAQC 230 (321)
T ss_dssp CEEEEEEECCCSSSGGGGGSSHHHHHHHHHH--EEE-EEEEEEEE
T ss_pred CceEEEECCcCCCCcchhhhHHHHHHHHHHh--cCC-CcEEEEEc
Confidence 899999998431 0223 7889999998 876 99988864
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.7e-11 Score=93.68 Aligned_cols=113 Identities=14% Similarity=0.125 Sum_probs=91.9
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
....+...+.+.......+..+|||+||| +|..++.|+. . +.+++++|.+ +.+++.|+++++ ++ +++++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~---~-~~~v~~vD~~-~~~~~~a~~~~~~~~~-~~~~~~~ 89 (183)
T 2yxd_A 17 PITKEEIRAVSIGKLNLNKDDVVVDVGCG-SGGMTVEIAK---R-CKFVYAIDYL-DGAIEVTKQNLAKFNI-KNCQIIK 89 (183)
T ss_dssp CCCCHHHHHHHHHHHCCCTTCEEEEESCC-CSHHHHHHHT---T-SSEEEEEECS-HHHHHHHHHHHHHTTC-CSEEEEE
T ss_pred CcCHHHHHHHHHHHcCCCCCCEEEEeCCC-CCHHHHHHHh---c-CCeEEEEeCC-HHHHHHHHHHHHHcCC-CcEEEEE
Confidence 34556666777777677788999999997 8999999887 2 7899999999 999999999997 55 6799999
Q ss_pred cchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 100 GDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 100 gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+|+.+.++. ++||+|+.+.. ....+.++.+.+ + | ||.+++..
T Consensus 90 ~d~~~~~~~--~~~D~i~~~~~---~~~~~~l~~~~~---~-~-gG~l~~~~ 131 (183)
T 2yxd_A 90 GRAEDVLDK--LEFNKAFIGGT---KNIEKIIEILDK---K-K-INHIVANT 131 (183)
T ss_dssp SCHHHHGGG--CCCSEEEECSC---SCHHHHHHHHHH---T-T-CCEEEEEE
T ss_pred CCccccccC--CCCcEEEECCc---ccHHHHHHHHhh---C-C-CCEEEEEe
Confidence 999986654 68999999887 467888888887 4 5 77766654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.5e-12 Score=108.36 Aligned_cols=115 Identities=16% Similarity=0.088 Sum_probs=90.8
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcc-----cCCcEEEEEcch
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGR-----YANCIEFVKGDA 102 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g-----~~~~Ve~v~gda 102 (220)
.+.+|..++...+..+|||+||| +|..++.|+...+ +.+|++||.+ +++++.|++++.. +.++++++++|+
T Consensus 24 D~~lL~~~~~~~~~~~VLDlG~G-~G~~~l~la~~~~--~~~v~gvDi~-~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~ 99 (260)
T 2ozv_A 24 DAMLLASLVADDRACRIADLGAG-AGAAGMAVAARLE--KAEVTLYERS-QEMAEFARRSLELPDNAAFSARIEVLEADV 99 (260)
T ss_dssp HHHHHHHTCCCCSCEEEEECCSS-SSHHHHHHHHHCT--TEEEEEEESS-HHHHHHHHHHTTSGGGTTTGGGEEEEECCT
T ss_pred HHHHHHHHhcccCCCEEEEeCCh-HhHHHHHHHHhCC--CCeEEEEECC-HHHHHHHHHHHHhhhhCCCcceEEEEeCCH
Confidence 46677777777778899999997 9999999998754 5899999999 9999999999863 345799999999
Q ss_pred hhhhhh-----c-CCCccEEEEcCCCCC-------------------ccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 103 QKLLMG-----D-YRGADFVLIDCNIDI-------------------DGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 103 ~~~L~~-----~-~~~~D~VfiD~~k~~-------------------~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.+.++. + .++||+|+.+.+-.. ..+..+++.+.+. |+| ||.+++
T Consensus 100 ~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~--Lkp-gG~l~~ 168 (260)
T 2ozv_A 100 TLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAI--MVS-GGQLSL 168 (260)
T ss_dssp TCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHH--EEE-EEEEEE
T ss_pred HHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHH--cCC-CCEEEE
Confidence 887531 1 368999999854310 2367889999998 887 776655
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=8.8e-12 Score=109.32 Aligned_cols=117 Identities=10% Similarity=0.111 Sum_probs=93.7
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
+....|...+.+...+...+..+||||||| +|+.++.|+...++ .++|+++|.+ +++++.|+++++ ++ .+++++
T Consensus 56 q~~~~~~~~~~l~~~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~-~~~v~gvD~s-~~~~~~a~~~~~~~g~-~~v~~~ 131 (317)
T 1dl5_A 56 STSSQPSLMALFMEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGE-KGLVVSVEYS-RKICEIAKRNVERLGI-ENVIFV 131 (317)
T ss_dssp EEECCHHHHHHHHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCT-TCEEEEEESC-HHHHHHHHHHHHHTTC-CSEEEE
T ss_pred eeccCHHHHHHHHHhcCCCCcCEEEEecCC-chHHHHHHHHhcCC-CCEEEEEECC-HHHHHHHHHHHHHcCC-CCeEEE
Confidence 445567777777777777788999999997 89999999987654 6899999999 999999999997 66 459999
Q ss_pred EcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 99 KGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 99 ~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++|+.+.++. .++||+|+++... .... +.+.+. |+| ||++++.
T Consensus 132 ~~d~~~~~~~-~~~fD~Iv~~~~~--~~~~---~~~~~~--Lkp-gG~lvi~ 174 (317)
T 1dl5_A 132 CGDGYYGVPE-FSPYDVIFVTVGV--DEVP---ETWFTQ--LKE-GGRVIVP 174 (317)
T ss_dssp ESCGGGCCGG-GCCEEEEEECSBB--SCCC---HHHHHH--EEE-EEEEEEE
T ss_pred ECChhhcccc-CCCeEEEEEcCCH--HHHH---HHHHHh--cCC-CcEEEEE
Confidence 9999886643 4689999999877 4433 456666 776 8887775
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=107.39 Aligned_cols=116 Identities=14% Similarity=0.126 Sum_probs=90.1
Q ss_pred HHHHHHHh--hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcc----c-CCcEEEEEcch
Q 042616 30 EFISALAA--GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGR----Y-ANCIEFVKGDA 102 (220)
Q Consensus 30 ~~L~~La~--~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g----~-~~~Ve~v~gda 102 (220)
+++..++. ..++++||||||| .|..+..+++.. ...+|++||+| +..++.|++++.. + ..+++++++|+
T Consensus 66 e~l~~~~l~~~~~~~~VLdiG~G-~G~~~~~l~~~~--~~~~v~~vDid-~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~ 141 (283)
T 2i7c_A 66 EMMTHVPMTVSKEPKNVLVVGGG-DGGIIRELCKYK--SVENIDICEID-ETVIEVSKIYFKNISCGYEDKRVNVFIEDA 141 (283)
T ss_dssp HHHHHHHHTTSSSCCEEEEEECT-TSHHHHHHTTCT--TCCEEEEEESC-HHHHHHHHHHCTTTSGGGGSTTEEEEESCH
T ss_pred HHHHHHHHhcCCCCCeEEEEeCC-cCHHHHHHHHcC--CCCEEEEEECC-HHHHHHHHHHhHHhccccCCCcEEEEECCh
Confidence 44444332 3568999999986 899999888642 25899999999 9999999999862 2 46899999999
Q ss_pred hhhhhhcCCCccEEEEcCCCCC----ccH-HHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 103 QKLLMGDYRGADFVLIDCNIDI----DGH-KNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k~~----~~y-~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.+.++...++||+|++|..... ..| .++++.+.+. |+| ||++++...
T Consensus 142 ~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~--L~p-gG~lv~~~~ 193 (283)
T 2i7c_A 142 SKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNA--LKP-NGYCVAQCE 193 (283)
T ss_dssp HHHHHHCCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHH--EEE-EEEEEEECC
T ss_pred HHHHHhCCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHh--cCC-CcEEEEECC
Confidence 9988665678999999985311 122 6899999999 876 999888743
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-11 Score=99.54 Aligned_cols=119 Identities=13% Similarity=0.061 Sum_probs=91.2
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCC----cEE
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYAN----CIE 96 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~----~Ve 96 (220)
.+.+...+++..++...++.+|||+||| +|..+..|+...+ ..+|++||.+ +.+++.|++++. ++.+ +++
T Consensus 12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG-~G~~~~~l~~~~~--~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~~~~~v~ 87 (217)
T 3jwh_A 12 SLNQQRMNGVVAALKQSNARRVIDLGCG-QGNLLKILLKDSF--FEQITGVDVS-YRSLEIAQERLDRLRLPRNQWERLQ 87 (217)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEETCT-TCHHHHHHHHCTT--CSEEEEEESC-HHHHHHHHHHHTTCCCCHHHHTTEE
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEeCCC-CCHHHHHHHhhCC--CCEEEEEECC-HHHHHHHHHHHHHhcCCcccCcceE
Confidence 3445667777777788889999999997 9999999987532 3799999999 999999999986 4433 799
Q ss_pred EEEcchhhhhhhcCCCccEEEEcCCCC---CccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 97 FVKGDAQKLLMGDYRGADFVLIDCNID---IDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 97 ~v~gda~~~L~~~~~~~D~VfiD~~k~---~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
++++|+.. ++...++||+|+...-.. ..+...+++.+.+. |+| ||++++
T Consensus 88 ~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~--Lkp-gG~li~ 139 (217)
T 3jwh_A 88 LIQGALTY-QDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEF--AQP-KIVIVT 139 (217)
T ss_dssp EEECCTTS-CCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTT--TCC-SEEEEE
T ss_pred EEeCCccc-ccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHH--cCC-CEEEEE
Confidence 99999854 322246899999776441 12457889999998 887 666654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-11 Score=100.16 Aligned_cols=104 Identities=12% Similarity=-0.081 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CCCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~~~D~ 115 (220)
.+..+||||||| +|..++.||...+ +.++++||.+ +.+++.|++++. ++ ++++++++|+.++...+ .+.||+
T Consensus 40 ~~~~~vLDiGcG-~G~~~~~la~~~p--~~~v~gvD~s-~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~ 114 (214)
T 1yzh_A 40 NDNPIHVEVGSG-KGAFVSGMAKQNP--DINYIGIDIQ-KSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDR 114 (214)
T ss_dssp SCCCEEEEESCT-TSHHHHHHHHHCT--TSEEEEEESC-HHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSE
T ss_pred CCCCeEEEEccC-cCHHHHHHHHHCC--CCCEEEEEcC-HHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCE
Confidence 457899999997 9999999998764 5899999999 999999999997 66 68999999998843112 367999
Q ss_pred EEEcCCCCC---------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 116 VLIDCNIDI---------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 116 VfiD~~k~~---------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+++.+... ..+..+++.+.+. |+| ||++++.
T Consensus 115 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~l~~~ 155 (214)
T 1yzh_A 115 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRI--LPE-NGEIHFK 155 (214)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHH--SCT-TCEEEEE
T ss_pred EEEECCCCccccchhhhccCCHHHHHHHHHH--cCC-CcEEEEE
Confidence 999866410 0346899999998 887 7766553
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.3e-12 Score=116.74 Aligned_cols=126 Identities=13% Similarity=0.053 Sum_probs=99.8
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
+...+....++++..++...+..+|||+||| +|..|+.||..++. .|+|+++|.+ +.+++.+++|++ |+ . |++
T Consensus 81 G~~~vQd~ss~l~a~~L~~~~g~~VLDlgaG-pG~kt~~LA~~~~~-~g~V~AvDis-~~~l~~a~~n~~r~G~-~-v~~ 155 (464)
T 3m6w_A 81 GLYYIQEPSAQAVGVLLDPKPGERVLDLAAA-PGGKTTHLAARMGG-KGLLLANEVD-GKRVRGLLENVERWGA-P-LAV 155 (464)
T ss_dssp TSEEECCTTTHHHHHHHCCCTTCEEEESSCT-TCHHHHHHHHHTTT-CSEEEEECSC-HHHHHHHHHHHHHHCC-C-CEE
T ss_pred CeEEEECHHHHHHHHhcCcCCCCEEEEEcCC-cCHHHHHHHHhCCC-CCEEEEEECC-HHHHHHHHHHHHHcCC-e-EEE
Confidence 3344555567777777788888999999996 99999999988765 6899999999 999999999997 76 3 999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCC-------c----------------cHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDI-------D----------------GHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~-------~----------------~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+++|+.++.+...+.||.|++|++-.. . .+.++++.+.+. |+| ||.+|.-...
T Consensus 156 ~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~--Lkp-GG~LvysTCs 231 (464)
T 3m6w_A 156 TQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRL--LGP-GGVLVYSTCT 231 (464)
T ss_dssp ECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTT--EEE-EEEEEEEESC
T ss_pred EECCHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHh--cCC-CcEEEEEecc
Confidence 999999876434578999999987410 0 126678888887 876 8888865443
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=103.34 Aligned_cols=103 Identities=12% Similarity=-0.035 Sum_probs=81.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhh-c-CCCcc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMG-D-YRGAD 114 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~-~-~~~~D 114 (220)
.+...||||||| +|.+++.||...+ +.+|++||.+ +.+++.|+++++ ++ .+|+++++|+.++++. + .++||
T Consensus 33 ~~~~~vLDiGcG-~G~~~~~lA~~~p--~~~v~giD~s-~~~l~~a~~~~~~~~l-~nv~~~~~Da~~~l~~~~~~~~~d 107 (218)
T 3dxy_A 33 REAPVTLEIGFG-MGASLVAMAKDRP--EQDFLGIEVH-SPGVGACLASAHEEGL-SNLRVMCHDAVEVLHKMIPDNSLR 107 (218)
T ss_dssp SCCCEEEEESCT-TCHHHHHHHHHCT--TSEEEEECSC-HHHHHHHHHHHHHTTC-SSEEEECSCHHHHHHHHSCTTCEE
T ss_pred CCCCeEEEEeee-ChHHHHHHHHHCC--CCeEEEEEec-HHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHcCCCChh
Confidence 367899999997 9999999998764 5899999999 999999999986 55 5799999999998764 2 47899
Q ss_pred EEEEc---CCCCCcc------HHHHHHHHHhhcCCCCCCEEEEE
Q 042616 115 FVLID---CNIDIDG------HKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 115 ~VfiD---~~k~~~~------y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.|++. .+..... ...+++.+.+. |+| ||++++
T Consensus 108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~--Lkp-GG~l~i 148 (218)
T 3dxy_A 108 MVQLFFPDPWHKARHNKRRIVQVPFAELVKSK--LQL-GGVFHM 148 (218)
T ss_dssp EEEEESCCCCCSGGGGGGSSCSHHHHHHHHHH--EEE-EEEEEE
T ss_pred eEEEeCCCCccchhhhhhhhhhHHHHHHHHHH--cCC-CcEEEE
Confidence 99985 3221111 13589999998 887 777654
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7.3e-12 Score=108.14 Aligned_cols=101 Identities=12% Similarity=0.086 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+.++|||+||| +|+.++.+|.... .+|+++|.+ +.+++.|++|++ ++.++++++++|+.+.++ .+.||+|
T Consensus 124 ~~~~~VLDlgcG-~G~~~~~la~~~~---~~V~~vD~s-~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~--~~~fD~V 196 (278)
T 2frn_A 124 KPDELVVDMFAG-IGHLSLPIAVYGK---AKVIAIEKD-PYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--ENIADRI 196 (278)
T ss_dssp CTTCEEEETTCT-TTTTHHHHHHHTC---CEEEEECCC-HHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--CSCEEEE
T ss_pred CCCCEEEEeccc-CCHHHHHHHHhCC---CEEEEEECC-HHHHHHHHHHHHHcCCCceEEEEECCHHHhcc--cCCccEE
Confidence 347899999997 9999999998642 289999999 999999999997 776779999999999775 5789999
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
++|.+. ...++++.+.+. |+| ||++++...
T Consensus 197 i~~~p~---~~~~~l~~~~~~--Lkp-gG~l~~~~~ 226 (278)
T 2frn_A 197 LMGYVV---RTHEFIPKALSI--AKD-GAIIHYHNT 226 (278)
T ss_dssp EECCCS---SGGGGHHHHHHH--EEE-EEEEEEEEE
T ss_pred EECCch---hHHHHHHHHHHH--CCC-CeEEEEEEe
Confidence 999876 335677888888 876 888777543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-11 Score=99.25 Aligned_cols=118 Identities=13% Similarity=0.041 Sum_probs=89.7
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCC----cEEE
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYAN----CIEF 97 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~----~Ve~ 97 (220)
+.+...+++..++...++.+||||||| +|..+..|+...+ ..+|++||++ +.+++.|++++. ++.+ ++++
T Consensus 13 ~~~~~~~~l~~~l~~~~~~~vLDiGcG-~G~~~~~l~~~~~--~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~~~~~v~~ 88 (219)
T 3jwg_A 13 LNQQRLGTVVAVLKSVNAKKVIDLGCG-EGNLLSLLLKDKS--FEQITGVDVS-YSVLERAKDRLKIDRLPEMQRKRISL 88 (219)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEETCT-TCHHHHHHHTSTT--CCEEEEEESC-HHHHHHHHHHHTGGGSCHHHHTTEEE
T ss_pred chHHHHHHHHHHHhhcCCCEEEEecCC-CCHHHHHHHhcCC--CCEEEEEECC-HHHHHHHHHHHHhhccccccCcceEE
Confidence 345566777777777889999999997 9999999987542 3799999999 999999999986 4433 8999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+++|+.. ++...++||+|+...-... .+...+++.+.+. |+| ||+++.
T Consensus 89 ~~~d~~~-~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~--Lkp-gG~~i~ 139 (219)
T 3jwg_A 89 FQSSLVY-RDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEF--TRP-QTVIVS 139 (219)
T ss_dssp EECCSSS-CCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTT--TCC-SEEEEE
T ss_pred EeCcccc-cccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHh--hCC-CEEEEE
Confidence 9999854 3322468999997654311 1335788999998 887 777665
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-11 Score=98.70 Aligned_cols=118 Identities=15% Similarity=0.084 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchh
Q 042616 26 PDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQ 103 (220)
Q Consensus 26 p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~ 103 (220)
+...+.+....... +.+|||+||| +|..+..|+.. . +.+++++|++ +.+++.|++++. ++.++++++++|+.
T Consensus 30 ~~~~~~~~~~~~~~-~~~vLdiG~G-~G~~~~~l~~~--~-~~~v~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 103 (219)
T 3dlc_A 30 PIIAENIINRFGIT-AGTCIDIGSG-PGALSIALAKQ--S-DFSIRALDFS-KHMNEIALKNIADANLNDRIQIVQGDVH 103 (219)
T ss_dssp HHHHHHHHHHHCCC-EEEEEEETCT-TSHHHHHHHHH--S-EEEEEEEESC-HHHHHHHHHHHHHTTCTTTEEEEECBTT
T ss_pred HHHHHHHHHhcCCC-CCEEEEECCC-CCHHHHHHHHc--C-CCeEEEEECC-HHHHHHHHHHHHhccccCceEEEEcCHH
Confidence 33344443333333 3499999997 99999999986 2 6799999999 999999999987 66678999999998
Q ss_pred hhhhhcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 104 KLLMGDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+. +...++||+|+..... ...+....++.+.+. |+| ||.+++.+.+
T Consensus 104 ~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~--L~p-gG~l~~~~~~ 150 (219)
T 3dlc_A 104 NI-PIEDNYADLIVSRGSVFFWEDVATAFREIYRI--LKS-GGKTYIGGGF 150 (219)
T ss_dssp BC-SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHH--EEE-EEEEEEEECC
T ss_pred HC-CCCcccccEEEECchHhhccCHHHHHHHHHHh--CCC-CCEEEEEecc
Confidence 73 3224789999987643 114568899999998 886 7777665433
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-11 Score=103.49 Aligned_cols=111 Identities=7% Similarity=-0.041 Sum_probs=86.4
Q ss_pred HHHHHHhhCC-CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh
Q 042616 31 FISALAAGNN-AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 31 ~L~~La~~~~-a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~ 107 (220)
-|.+++...+ ..+|+||||| +|+.++.||...+ .++|+++|.+ +..++.|++|++ ++.++|+++.+|+.+.++
T Consensus 5 RL~~l~~~v~~g~~VlDIGtG-sG~l~i~la~~~~--~~~V~avDi~-~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~ 80 (225)
T 3kr9_A 5 RLELVASFVSQGAILLDVGSD-HAYLPIELVERGQ--IKSAIAGEVV-EGPYQSAVKNVEAHGLKEKIQVRLANGLAAFE 80 (225)
T ss_dssp HHHHHHTTSCTTEEEEEETCS-TTHHHHHHHHTTS--EEEEEEEESS-HHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC
T ss_pred HHHHHHHhCCCCCEEEEeCCC-cHHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHHHHHcCCCceEEEEECchhhhcc
Confidence 3566666554 4689999997 9999999998533 5799999999 999999999997 787889999999988775
Q ss_pred hcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 108 GDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
. .++||.|++-+-- .....+.++..... |++ ++.+|.-
T Consensus 81 ~-~~~~D~IviaG~G-g~~i~~Il~~~~~~--L~~-~~~lVlq 118 (225)
T 3kr9_A 81 E-TDQVSVITIAGMG-GRLIARILEEGLGK--LAN-VERLILQ 118 (225)
T ss_dssp G-GGCCCEEEEEEEC-HHHHHHHHHHTGGG--CTT-CCEEEEE
T ss_pred c-CcCCCEEEEcCCC-hHHHHHHHHHHHHH--hCC-CCEEEEE
Confidence 3 2369999985543 12357888888888 876 5555543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=100.08 Aligned_cols=98 Identities=9% Similarity=0.004 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
+..+|||+||| +|..++.|+...+ +.+++++|.+ +.+++.|++++. ++. +++++++|+.+..+ .++||+|+
T Consensus 65 ~~~~vLDiG~G-~G~~~~~l~~~~~--~~~v~~vD~s-~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~--~~~~D~i~ 137 (207)
T 1jsx_A 65 QGERFIDVGTG-PGLPGIPLSIVRP--EAHFTLLDSL-GKRVRFLRQVQHELKLE-NIEPVQSRVEEFPS--EPPFDGVI 137 (207)
T ss_dssp CSSEEEEETCT-TTTTHHHHHHHCT--TSEEEEEESC-HHHHHHHHHHHHHTTCS-SEEEEECCTTTSCC--CSCEEEEE
T ss_pred CCCeEEEECCC-CCHHHHHHHHHCC--CCEEEEEeCC-HHHHHHHHHHHHHcCCC-CeEEEecchhhCCc--cCCcCEEE
Confidence 47899999997 9999999998764 6899999999 999999999987 553 49999999988653 36899999
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..+- ..+..+++.+.+. |+| ||.+++.
T Consensus 138 ~~~~---~~~~~~l~~~~~~--L~~-gG~l~~~ 164 (207)
T 1jsx_A 138 SRAF---ASLNDMVSWCHHL--PGE-QGRFYAL 164 (207)
T ss_dssp CSCS---SSHHHHHHHHTTS--EEE-EEEEEEE
T ss_pred Eecc---CCHHHHHHHHHHh--cCC-CcEEEEE
Confidence 7653 5788999999998 876 7777665
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.9e-11 Score=109.30 Aligned_cols=106 Identities=11% Similarity=0.032 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCC-cEEEEEcchhhhhhhc---CCC
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYAN-CIEFVKGDAQKLLMGD---YRG 112 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~-~Ve~v~gda~~~L~~~---~~~ 112 (220)
.+.++|||+||| +|..++.+|... ..+|++||.+ +.+++.|++|++ ++.+ +++++++|+.+.++.+ ...
T Consensus 211 ~~~~~VLDl~cG-tG~~sl~la~~g---a~~V~~vD~s-~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~ 285 (385)
T 2b78_A 211 AAGKTVLNLFSY-TAAFSVAAAMGG---AMATTSVDLA-KRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLT 285 (385)
T ss_dssp TBTCEEEEETCT-TTHHHHHHHHTT---BSEEEEEESC-TTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred cCCCeEEEEeec-cCHHHHHHHHCC---CCEEEEEECC-HHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCC
Confidence 567899999997 999999998741 3599999999 999999999997 6655 8999999999988654 358
Q ss_pred ccEEEEcCCCCC----------ccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 113 ADFVLIDCNIDI----------DGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 113 ~D~VfiD~~k~~----------~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
||+|++|++.-. ..|.++++.+.+. |+| ||++++...
T Consensus 286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~--L~p-gG~l~~~~~ 332 (385)
T 2b78_A 286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEI--LSE-NGLIIASTN 332 (385)
T ss_dssp EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHT--EEE-EEEEEEEEC
T ss_pred ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHh--cCC-CcEEEEEeC
Confidence 999999987610 1345566777777 876 777766543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.1e-12 Score=109.68 Aligned_cols=108 Identities=19% Similarity=0.110 Sum_probs=85.4
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
..++.+||||||| +|..++.||.+..+ +.+|++||.+ +.+++.|++++. ++.++++++++|+.+.. . .++||+
T Consensus 116 l~~~~~vLDiGcG-~G~~~~~la~~~~~-~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~-~~~fD~ 190 (305)
T 3ocj_A 116 LRPGCVVASVPCG-WMSELLALDYSACP-GVQLVGIDYD-PEALDGATRLAAGHALAGQITLHRQDAWKLD-T-REGYDL 190 (305)
T ss_dssp CCTTCEEEETTCT-TCHHHHTSCCTTCT-TCEEEEEESC-HHHHHHHHHHHTTSTTGGGEEEEECCGGGCC-C-CSCEEE
T ss_pred CCCCCEEEEecCC-CCHHHHHHHHhcCC-CCeEEEEECC-HHHHHHHHHHHHhcCCCCceEEEECchhcCC-c-cCCeEE
Confidence 4667899999997 99999988744443 7899999999 999999999997 66677999999999853 2 378999
Q ss_pred EEEcCCC----CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 116 VLIDCNI----DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 116 VfiD~~k----~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|+..... +...+..+++.+.+. |+| ||.+++.+..
T Consensus 191 v~~~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~l~i~~~~ 229 (305)
T 3ocj_A 191 LTSNGLNIYEPDDARVTELYRRFWQA--LKP-GGALVTSFLT 229 (305)
T ss_dssp EECCSSGGGCCCHHHHHHHHHHHHHH--EEE-EEEEEEECCC
T ss_pred EEECChhhhcCCHHHHHHHHHHHHHh--cCC-CeEEEEEecC
Confidence 9986532 012334579999998 886 8888887654
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-11 Score=113.64 Aligned_cols=127 Identities=11% Similarity=0.066 Sum_probs=98.1
Q ss_pred CCCCCChhHHHHHHHHHhhC--CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcE
Q 042616 20 GKRGKEPDVGEFISALAAGN--NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCI 95 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~--~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~V 95 (220)
+...+....+.++..++... +..+|||+||| +|..|+.||..++. .|+|+++|.+ +.+++.+++|++ ++ .+|
T Consensus 95 G~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aG-pG~kt~~lA~~~~~-~g~V~avDis-~~~l~~~~~n~~r~g~-~nv 170 (479)
T 2frx_A 95 GLFYIQEASSMLPVAALFADGNAPQRVMDVAAA-PGSKTTQISARMNN-EGAILANEFS-ASRVKVLHANISRCGI-SNV 170 (479)
T ss_dssp TSEEECCHHHHHHHHHHTTTTCCCSEEEESSCT-TSHHHHHHHHHTTT-CSEEEEECSS-HHHHHHHHHHHHHHTC-CSE
T ss_pred cEEEEECHHHHHHHHHhCcccCCCCEEEEeCCC-CCHHHHHHHHhCCC-CCEEEEEECC-HHHHHHHHHHHHHcCC-CcE
Confidence 33445555566666666666 78899999996 99999999998764 6999999999 999999999997 66 479
Q ss_pred EEEEcchhhhhhhcCCCccEEEEcCCCCC-------c----------------cHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 96 EFVKGDAQKLLMGDYRGADFVLIDCNIDI-------D----------------GHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 96 e~v~gda~~~L~~~~~~~D~VfiD~~k~~-------~----------------~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+++++|+.++.+...+.||.|++|++-.. . ...++++.+.+. |+| ||.+|....
T Consensus 171 ~~~~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~--Lkp-GG~LvysTc 247 (479)
T 2frx_A 171 ALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHA--LRP-GGTLVYSTC 247 (479)
T ss_dssp EEECCCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHH--EEE-EEEEEEEES
T ss_pred EEEeCCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHh--cCC-CCEEEEecc
Confidence 99999998865434568999999976410 0 024567888888 876 898887655
Q ss_pred C
Q 042616 153 L 153 (220)
Q Consensus 153 ~ 153 (220)
.
T Consensus 248 s 248 (479)
T 2frx_A 248 T 248 (479)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-11 Score=118.27 Aligned_cols=113 Identities=13% Similarity=0.077 Sum_probs=91.6
Q ss_pred HHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccC-CcEEEEEcchhhhhhhc
Q 042616 33 SALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYA-NCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 33 ~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~-~~Ve~v~gda~~~L~~~ 109 (220)
..++...+.++|||+||| +|..++.+|.. ...+|++||.+ +.+++.|++|++ ++. ++++++++|+.+.++..
T Consensus 532 ~~l~~~~~g~~VLDlg~G-tG~~sl~aa~~---ga~~V~aVD~s-~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~ 606 (703)
T 3v97_A 532 RMLGQMSKGKDFLNLFSY-TGSATVHAGLG---GARSTTTVDMS-RTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA 606 (703)
T ss_dssp HHHHHHCTTCEEEEESCT-TCHHHHHHHHT---TCSEEEEEESC-HHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC
T ss_pred HHHHHhcCCCcEEEeeec-hhHHHHHHHHC---CCCEEEEEeCC-HHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc
Confidence 334455678999999996 99999988863 14589999999 999999999997 675 58999999999998775
Q ss_pred CCCccEEEEcCCCC------------CccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 110 YRGADFVLIDCNID------------IDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 110 ~~~~D~VfiD~~k~------------~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.++||+|++|++.- ...|.++++.+.+. |+| ||++++.+..
T Consensus 607 ~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~--Lkp-gG~L~~s~~~ 659 (703)
T 3v97_A 607 NEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRL--LRA-GGTIMFSNNK 659 (703)
T ss_dssp CCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHH--EEE-EEEEEEEECC
T ss_pred CCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHh--cCC-CcEEEEEECC
Confidence 67899999999730 13577888888898 876 8888876554
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-11 Score=102.68 Aligned_cols=104 Identities=13% Similarity=0.019 Sum_probs=84.4
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hhhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LMGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~~~~~D~ 115 (220)
..+..+|||+||| +|++|..||....+ .|+|+++|.+ +++++.++++.+.. .+++.+.+|+.+. .+...+.+|+
T Consensus 75 ikpG~~VldlG~G-~G~~~~~la~~VG~-~G~V~avD~s-~~~~~~l~~~a~~~-~ni~~V~~d~~~p~~~~~~~~~vDv 150 (233)
T 4df3_A 75 VKEGDRILYLGIA-SGTTASHMSDIIGP-RGRIYGVEFA-PRVMRDLLTVVRDR-RNIFPILGDARFPEKYRHLVEGVDG 150 (233)
T ss_dssp CCTTCEEEEETCT-TSHHHHHHHHHHCT-TCEEEEEECC-HHHHHHHHHHSTTC-TTEEEEESCTTCGGGGTTTCCCEEE
T ss_pred CCCCCEEEEecCc-CCHHHHHHHHHhCC-CceEEEEeCC-HHHHHHHHHhhHhh-cCeeEEEEeccCccccccccceEEE
Confidence 4667999999997 99999999999877 8999999999 99999999988744 5799999998653 2333578999
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
||.|-.. ..+....+..+.+. |+| ||.++.
T Consensus 151 Vf~d~~~-~~~~~~~l~~~~r~--LKp-GG~lvI 180 (233)
T 4df3_A 151 LYADVAQ-PEQAAIVVRNARFF--LRD-GGYMLM 180 (233)
T ss_dssp EEECCCC-TTHHHHHHHHHHHH--EEE-EEEEEE
T ss_pred EEEeccC-ChhHHHHHHHHHHh--ccC-CCEEEE
Confidence 9999877 24456778888888 887 665543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-11 Score=102.81 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=87.6
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
...|...+.+..++...+..+||||||| +|+.++.|+...+ ++|+++|.+ +..++.|+++++ ++ .+++++.+
T Consensus 74 ~~~~~~~~~~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~---~~v~~vD~~-~~~~~~a~~~~~~~~~-~~v~~~~~ 147 (235)
T 1jg1_A 74 VSAPHMVAIMLEIANLKPGMNILEVGTG-SGWNAALISEIVK---TDVYTIERI-PELVEFAKRNLERAGV-KNVHVILG 147 (235)
T ss_dssp ECCHHHHHHHHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHC---SCEEEEESC-HHHHHHHHHHHHHTTC-CSEEEEES
T ss_pred eccHHHHHHHHHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhC---CEEEEEeCC-HHHHHHHHHHHHHcCC-CCcEEEEC
Confidence 3456677777677777788899999997 9999999998753 799999999 999999999997 55 45999999
Q ss_pred chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+...++. ..+||+|+++... .... +.+.+. |+| ||.+++.
T Consensus 148 d~~~~~~~-~~~fD~Ii~~~~~--~~~~---~~~~~~--L~p-gG~lvi~ 188 (235)
T 1jg1_A 148 DGSKGFPP-KAPYDVIIVTAGA--PKIP---EPLIEQ--LKI-GGKLIIP 188 (235)
T ss_dssp CGGGCCGG-GCCEEEEEECSBB--SSCC---HHHHHT--EEE-EEEEEEE
T ss_pred CcccCCCC-CCCccEEEECCcH--HHHH---HHHHHh--cCC-CcEEEEE
Confidence 98544433 3469999999876 4443 355666 766 8877664
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.6e-11 Score=102.08 Aligned_cols=131 Identities=11% Similarity=0.034 Sum_probs=98.6
Q ss_pred hhhHHHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHH
Q 042616 7 ENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKK 86 (220)
Q Consensus 7 e~a~~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~ 86 (220)
....+.|.+. .....+...++|..+.. .+..+||||||| +|..+..|+...++ +.+|++||++ +.+++.|++
T Consensus 8 ~~~~~~y~~~----rp~y~~~~~~~l~~~~~-~~~~~vLDiGcG-~G~~~~~la~~~~~-~~~v~gvD~s-~~~~~~a~~ 79 (299)
T 3g5t_A 8 DFNSERYSSS----RPSYPSDFYKMIDEYHD-GERKLLVDVGCG-PGTATLQMAQELKP-FEQIIGSDLS-ATMIKTAEV 79 (299)
T ss_dssp TCCHHHHHHH----SCCCCHHHHHHHHHHCC-SCCSEEEEETCT-TTHHHHHHHHHSSC-CSEEEEEESC-HHHHHHHHH
T ss_pred ccChHHHhhc----CCCCCHHHHHHHHHHhc-CCCCEEEEECCC-CCHHHHHHHHhCCC-CCEEEEEeCC-HHHHHHHHH
Confidence 3344455443 34455666666665533 478999999997 99999999986544 7899999999 999999999
Q ss_pred Hhcc---cCCcEEEEEcchhhhhhhcC------CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 87 SLGR---YANCIEFVKGDAQKLLMGDY------RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 87 ~l~g---~~~~Ve~v~gda~~~L~~~~------~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+++. ...+++++++|+.+.- ... ++||+|+.......-+....++.+.+. |+| ||.+++
T Consensus 80 ~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~--Lkp-gG~l~i 147 (299)
T 3g5t_A 80 IKEGSPDTYKNVSFKISSSDDFK-FLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYAN--LRK-DGTIAI 147 (299)
T ss_dssp HHHHCC-CCTTEEEEECCTTCCG-GGCTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHH--EEE-EEEEEE
T ss_pred HHHhccCCCCceEEEEcCHHhCC-ccccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHh--cCC-CcEEEE
Confidence 9873 3578999999998743 223 689999987654223678899999999 886 888776
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.7e-12 Score=107.12 Aligned_cols=110 Identities=17% Similarity=0.142 Sum_probs=82.9
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~ 107 (220)
.++..+....+..+|||+||| +|..++.|+.. +++|+++|.+ +.+++.|+++++ ++.++++++++|+.+..+
T Consensus 68 ~l~~~~~~~~~~~~vLD~gcG-~G~~~~~la~~----~~~v~~vD~s-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 141 (241)
T 3gdh_A 68 HIAGRVSQSFKCDVVVDAFCG-VGGNTIQFALT----GMRVIAIDID-PVKIALARNNAEVYGIADKIEFICGDFLLLAS 141 (241)
T ss_dssp HHHHHHHHHSCCSEEEETTCT-TSHHHHHHHHT----TCEEEEEESC-HHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG
T ss_pred HHHHHhhhccCCCEEEECccc-cCHHHHHHHHc----CCEEEEEECC-HHHHHHHHHHHHHcCCCcCeEEEECChHHhcc
Confidence 334444445578999999997 99999999974 6899999999 999999999997 555689999999999764
Q ss_pred hcCCCccEEEEcCCCCCccH-HHHHHHHHhhcCCCCCCEEEEEe
Q 042616 108 GDYRGADFVLIDCNIDIDGH-KNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k~~~~y-~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..+||+|+.|.......+ ...+..+.+. |+| ||+++++
T Consensus 142 --~~~~D~v~~~~~~~~~~~~~~~~~~~~~~--L~p-gG~~i~~ 180 (241)
T 3gdh_A 142 --FLKADVVFLSPPWGGPDYATAETFDIRTM--MSP-DGFEIFR 180 (241)
T ss_dssp --GCCCSEEEECCCCSSGGGGGSSSBCTTTS--CSS-CHHHHHH
T ss_pred --cCCCCEEEECCCcCCcchhhhHHHHHHhh--cCC-cceeHHH
Confidence 378999999987621111 1133345555 665 7776655
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-11 Score=101.73 Aligned_cols=101 Identities=17% Similarity=0.026 Sum_probs=81.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh---hhhcCCCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL---LMGDYRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~---L~~~~~~~D~ 115 (220)
.+..+|||+||| +|..++.|+...+ .++|++||.+ +.+++.|+++++.. .+++++.+|+.+. ++. .+.||+
T Consensus 73 ~~~~~VLDlGcG-~G~~~~~la~~~~--~~~v~gvD~s-~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~-~~~~D~ 146 (230)
T 1fbn_A 73 KRDSKILYLGAS-AGTTPSHVADIAD--KGIVYAIEYA-PRIMRELLDACAER-ENIIPILGDANKPQEYANI-VEKVDV 146 (230)
T ss_dssp CTTCEEEEESCC-SSHHHHHHHHHTT--TSEEEEEESC-HHHHHHHHHHTTTC-TTEEEEECCTTCGGGGTTT-SCCEEE
T ss_pred CCCCEEEEEccc-CCHHHHHHHHHcC--CcEEEEEECC-HHHHHHHHHHhhcC-CCeEEEECCCCCccccccc-CccEEE
Confidence 456899999997 8999999998765 4899999999 99999999998744 6899999999762 222 268999
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
||.|... ...+..+++.+.+. |+| ||.+++
T Consensus 147 v~~~~~~-~~~~~~~l~~~~~~--Lkp-gG~l~i 176 (230)
T 1fbn_A 147 IYEDVAQ-PNQAEILIKNAKWF--LKK-GGYGMI 176 (230)
T ss_dssp EEECCCS-TTHHHHHHHHHHHH--EEE-EEEEEE
T ss_pred EEEecCC-hhHHHHHHHHHHHh--CCC-CcEEEE
Confidence 9988644 14557779999988 887 777766
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.6e-11 Score=100.11 Aligned_cols=115 Identities=13% Similarity=0.031 Sum_probs=86.1
Q ss_pred CChhHH-HHHHHHH-hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--cc----CCcE
Q 042616 24 KEPDVG-EFISALA-AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RY----ANCI 95 (220)
Q Consensus 24 ~~p~~~-~~L~~La-~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~----~~~V 95 (220)
..|... .++..+. ...+..+|||+||| +|+.+..|+....+ .++|+++|.+ +.+++.|++++. +. .+++
T Consensus 59 ~~p~~~~~~l~~l~~~~~~~~~vLDiG~G-~G~~~~~la~~~~~-~~~v~~vD~s-~~~~~~a~~~~~~~~~~~~~~~~v 135 (226)
T 1i1n_A 59 SAPHMHAYALELLFDQLHEGAKALDVGSG-SGILTACFARMVGC-TGKVIGIDHI-KELVDDSVNNVRKDDPTLLSSGRV 135 (226)
T ss_dssp CCHHHHHHHHHHTTTTSCTTCEEEEETCT-TSHHHHHHHHHHCT-TCEEEEEESC-HHHHHHHHHHHHHHCTHHHHTSSE
T ss_pred cCHHHHHHHHHHHHhhCCCCCEEEEEcCC-cCHHHHHHHHHhCC-CcEEEEEeCC-HHHHHHHHHHHHhhcccccCCCcE
Confidence 445544 3444443 25567899999997 99999999987643 5799999999 999999999986 32 3689
Q ss_pred EEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 96 EFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 96 e~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++++|+.+..+. .++||+|+++... ... ++.+.+. |+| ||++++-
T Consensus 136 ~~~~~d~~~~~~~-~~~fD~i~~~~~~--~~~---~~~~~~~--Lkp-gG~lv~~ 181 (226)
T 1i1n_A 136 QLVVGDGRMGYAE-EAPYDAIHVGAAA--PVV---PQALIDQ--LKP-GGRLILP 181 (226)
T ss_dssp EEEESCGGGCCGG-GCCEEEEEECSBB--SSC---CHHHHHT--EEE-EEEEEEE
T ss_pred EEEECCcccCccc-CCCcCEEEECCch--HHH---HHHHHHh--cCC-CcEEEEE
Confidence 9999999865432 4689999999876 443 3566676 776 8877764
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.3e-11 Score=103.40 Aligned_cols=114 Identities=8% Similarity=-0.084 Sum_probs=89.5
Q ss_pred HHHHHHHHhh---CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchh
Q 042616 29 GEFISALAAG---NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQ 103 (220)
Q Consensus 29 ~~~L~~La~~---~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~ 103 (220)
.+.+..++.. .+..+||||||| +|..++.|+... +.+|++||++ +++++.|++++. ++.++++++++|+.
T Consensus 58 ~~~~~~~~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~---~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (302)
T 3hem_A 58 YAKRKLALDKLNLEPGMTLLDIGCG-WGSTMRHAVAEY---DVNVIGLTLS-ENQYAHDKAMFDEVDSPRRKEVRIQGWE 132 (302)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCT-TSHHHHHHHHHH---CCEEEEEECC-HHHHHHHHHHHHHSCCSSCEEEEECCGG
T ss_pred HHHHHHHHHHcCCCCcCEEEEeecc-CcHHHHHHHHhC---CCEEEEEECC-HHHHHHHHHHHHhcCCCCceEEEECCHH
Confidence 3444444443 456799999997 999999999865 4799999999 999999999987 67678999999998
Q ss_pred hhhhhcCCCccEEEEcCCC----------CCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 104 KLLMGDYRGADFVLIDCNI----------DIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k----------~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
++ .++||+|+....- ...++..+++.+.+. |+| ||.+++.....
T Consensus 133 ~~----~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~--Lkp-gG~l~i~~~~~ 186 (302)
T 3hem_A 133 EF----DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNL--TPD-DGRMLLHTITI 186 (302)
T ss_dssp GC----CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHS--SCT-TCEEEEEEEEC
T ss_pred Hc----CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHh--cCC-CcEEEEEEEec
Confidence 75 4789999975422 004568999999998 886 88877765543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.9e-11 Score=101.91 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=84.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
+.+||||||| +|..+..|+.. +.+|++||++ +.+++.|++++. ++..+++++++|+.+..+...++||+|+.
T Consensus 69 ~~~vLDiGcG-~G~~~~~l~~~----~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 142 (285)
T 4htf_A 69 KLRVLDAGGG-EGQTAIKMAER----GHQVILCDLS-AQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILF 142 (285)
T ss_dssp CCEEEEETCT-TCHHHHHHHHT----TCEEEEEESC-HHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEE
T ss_pred CCEEEEeCCc-chHHHHHHHHC----CCEEEEEECC-HHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEE
Confidence 5699999997 99999999875 6799999999 999999999987 66578999999998865343578999998
Q ss_pred cCCCC-CccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 119 DCNID-IDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 119 D~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
..... -.+...+++.+.+. |+| ||++++..
T Consensus 143 ~~~l~~~~~~~~~l~~~~~~--Lkp-gG~l~~~~ 173 (285)
T 4htf_A 143 HAVLEWVADPRSVLQTLWSV--LRP-GGVLSLMF 173 (285)
T ss_dssp ESCGGGCSCHHHHHHHHHHT--EEE-EEEEEEEE
T ss_pred CchhhcccCHHHHHHHHHHH--cCC-CeEEEEEE
Confidence 76441 14567899999998 886 88877653
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.26 E-value=8.2e-12 Score=101.05 Aligned_cols=119 Identities=8% Similarity=0.078 Sum_probs=72.6
Q ss_pred ChhHHHHHHHHHhh----CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 25 EPDVGEFISALAAG----NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 25 ~p~~~~~L~~La~~----~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.|+...++..+... .++.+|||+||| +|..++.++...+ +.+++++|.+ +.+++.|++++.....+++++++
T Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G-~G~~~~~l~~~~~--~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~ 86 (215)
T 4dzr_A 11 RPDTEVLVEEAIRFLKRMPSGTRVIDVGTG-SGCIAVSIALACP--GVSVTAVDLS-MDALAVARRNAERFGAVVDWAAA 86 (215)
T ss_dssp CHHHHHHHHHHHHHHTTCCTTEEEEEEESS-BCHHHHHHHHHCT--TEEEEEEECC--------------------CCHH
T ss_pred CccHHHHHHHHHHHhhhcCCCCEEEEecCC-HhHHHHHHHHhCC--CCeEEEEECC-HHHHHHHHHHHHHhCCceEEEEc
Confidence 34555555555443 678899999997 9999999998753 5799999999 99999999998722127999999
Q ss_pred chhhhhhh---cCCCccEEEEcCCCCC---------------------------ccHHHHHHHHHhhcCCCCCCEE-EEE
Q 042616 101 DAQKLLMG---DYRGADFVLIDCNIDI---------------------------DGHKNVFRAAKESVMHGSGAGV-IVG 149 (220)
Q Consensus 101 da~~~L~~---~~~~~D~VfiD~~k~~---------------------------~~y~~~l~~l~~~~~L~~~Ggv-iv~ 149 (220)
|+.+.++. ..++||+|+.|.+-.. ..|..+++.+.+. |+| ||. +++
T Consensus 87 d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~l~~~ 163 (215)
T 4dzr_A 87 DGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYV--LAR-GRAGVFL 163 (215)
T ss_dssp HHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGG--BCS-SSEEEEE
T ss_pred chHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHH--hcC-CCeEEEE
Confidence 99986653 1378999999754200 1126677777887 876 777 555
Q ss_pred e
Q 042616 150 Y 150 (220)
Q Consensus 150 d 150 (220)
.
T Consensus 164 ~ 164 (215)
T 4dzr_A 164 E 164 (215)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.4e-11 Score=99.58 Aligned_cols=113 Identities=14% Similarity=0.067 Sum_probs=89.9
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD 101 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd 101 (220)
....|...+.+..++...+..+||||||| +|+.+..|+.. +++|+++|++ +.+++.|++++.... +++++++|
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~----~~~v~~vD~~-~~~~~~a~~~~~~~~-~v~~~~~d 124 (231)
T 1vbf_A 52 NTTALNLGIFMLDELDLHKGQKVLEIGTG-IGYYTALIAEI----VDKVVSVEIN-EKMYNYASKLLSYYN-NIKLILGD 124 (231)
T ss_dssp EECCHHHHHHHHHHTTCCTTCEEEEECCT-TSHHHHHHHHH----SSEEEEEESC-HHHHHHHHHHHTTCS-SEEEEESC
T ss_pred ccCCHHHHHHHHHhcCCCCCCEEEEEcCC-CCHHHHHHHHH----cCEEEEEeCC-HHHHHHHHHHHhhcC-CeEEEECC
Confidence 45677777777777777788999999997 89999999986 3799999999 999999999987433 89999999
Q ss_pred hhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.+.++. .++||+|+++... .... +.+.+. |+| ||.+++.
T Consensus 125 ~~~~~~~-~~~fD~v~~~~~~--~~~~---~~~~~~--L~p-gG~l~~~ 164 (231)
T 1vbf_A 125 GTLGYEE-EKPYDRVVVWATA--PTLL---CKPYEQ--LKE-GGIMILP 164 (231)
T ss_dssp GGGCCGG-GCCEEEEEESSBB--SSCC---HHHHHT--EEE-EEEEEEE
T ss_pred ccccccc-CCCccEEEECCcH--HHHH---HHHHHH--cCC-CcEEEEE
Confidence 9885542 4689999999876 4333 456666 776 8877765
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.25 E-value=5.1e-11 Score=98.70 Aligned_cols=103 Identities=11% Similarity=-0.024 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CCCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~~~D~ 115 (220)
.+..+||||||| +|..++.||...+ +.++++||.+ +.+++.|+++++ ++ .+|+++++|+.++...+ .+.||.
T Consensus 37 ~~~~~vLDiGcG-~G~~~~~la~~~p--~~~v~giD~s-~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~~~~~d~ 111 (213)
T 2fca_A 37 NDNPIHIEVGTG-KGQFISGMAKQNP--DINYIGIELF-KSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKR 111 (213)
T ss_dssp SCCCEEEEECCT-TSHHHHHHHHHCT--TSEEEEECSC-HHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCE
T ss_pred CCCceEEEEecC-CCHHHHHHHHHCC--CCCEEEEEec-hHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCcCCcCE
Confidence 457889999997 9999999998754 6899999999 999999999987 55 57999999998843212 367999
Q ss_pred EEEcCCCC---------CccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 116 VLIDCNID---------IDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 116 VfiD~~k~---------~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|++..... .-.+..+++.+.+. |+| ||.+++
T Consensus 112 v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~--Lkp-gG~l~~ 151 (213)
T 2fca_A 112 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEV--MGK-GGSIHF 151 (213)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHH--HTT-SCEEEE
T ss_pred EEEECCCCCcCccccccccCcHHHHHHHHHH--cCC-CCEEEE
Confidence 99854320 01157889999998 887 776654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=7.9e-11 Score=100.86 Aligned_cols=118 Identities=10% Similarity=0.082 Sum_probs=92.2
Q ss_pred CChhHHHHHHHHHhh--CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 24 KEPDVGEFISALAAG--NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 24 ~~p~~~~~L~~La~~--~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
..|+...++..+... .++.+|||+||| +|..++.|+...+ +.+|+++|.+ +.+++.|+++++ ++ .++++++
T Consensus 91 pr~~te~l~~~~l~~~~~~~~~vLDlG~G-sG~~~~~la~~~~--~~~v~~vD~s-~~~l~~a~~n~~~~~~-~~v~~~~ 165 (276)
T 2b3t_A 91 PRPDTECLVEQALARLPEQPCRILDLGTG-TGAIALALASERP--DCEIIAVDRM-PDAVSLAQRNAQHLAI-KNIHILQ 165 (276)
T ss_dssp CCTTHHHHHHHHHHHSCSSCCEEEEETCT-TSHHHHHHHHHCT--TSEEEEECSS-HHHHHHHHHHHHHHTC-CSEEEEC
T ss_pred cCchHHHHHHHHHHhcccCCCEEEEecCC-ccHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHHHHHcCC-CceEEEE
Confidence 346666666666554 457899999997 9999999998764 5899999999 999999999997 55 4799999
Q ss_pred cchhhhhhhcCCCccEEEEcCCCCC--------------------------ccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 100 GDAQKLLMGDYRGADFVLIDCNIDI--------------------------DGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 100 gda~~~L~~~~~~~D~VfiD~~k~~--------------------------~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+|+.+.++ .++||+|+.+.+-.. ..|..+++.+.+. |+| ||.+++..
T Consensus 166 ~d~~~~~~--~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~--Lkp-gG~l~~~~ 238 (276)
T 2b3t_A 166 SDWFSALA--GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNA--LVS-GGFLLLEH 238 (276)
T ss_dssp CSTTGGGT--TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGG--EEE-EEEEEEEC
T ss_pred cchhhhcc--cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHh--cCC-CCEEEEEE
Confidence 99988664 368999999853200 2357778888888 876 88887753
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.25 E-value=8e-11 Score=104.57 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=95.5
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
..+.+..++.+..++...+...|||+||| +|..++.+|....+ ..+++++|.| +.+++.|++|++ ++. +|++++
T Consensus 185 a~l~~~la~~l~~~~~~~~~~~vLD~gcG-sG~~~ie~a~~~~~-~~~v~g~Di~-~~~i~~a~~n~~~~g~~-~i~~~~ 260 (354)
T 3tma_A 185 GSLTPVLAQALLRLADARPGMRVLDPFTG-SGTIALEAASTLGP-TSPVYAGDLD-EKRLGLAREAALASGLS-WIRFLR 260 (354)
T ss_dssp CSCCHHHHHHHHHHTTCCTTCCEEESSCT-TSHHHHHHHHHHCT-TSCEEEEESC-HHHHHHHHHHHHHTTCT-TCEEEE
T ss_pred CCcCHHHHHHHHHHhCCCCCCEEEeCCCC-cCHHHHHHHHhhCC-CceEEEEECC-HHHHHHHHHHHHHcCCC-ceEEEe
Confidence 34666777777777777778899999997 99999999987633 5899999999 999999999997 775 899999
Q ss_pred cchhhhhhhcCCCccEEEEcCCCCC---------ccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 100 GDAQKLLMGDYRGADFVLIDCNIDI---------DGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 100 gda~~~L~~~~~~~D~VfiD~~k~~---------~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|+.++.+. ...||+|+.|.+-.. ..|..+++.+.+. |+| ||.+++
T Consensus 261 ~D~~~~~~~-~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~--Lkp-gG~l~i 315 (354)
T 3tma_A 261 ADARHLPRF-FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALAL--LPP-GGRVAL 315 (354)
T ss_dssp CCGGGGGGT-CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHT--SCT-TCEEEE
T ss_pred CChhhCccc-cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHh--cCC-CcEEEE
Confidence 999996533 456899999976410 1257788888888 876 666555
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-10 Score=101.44 Aligned_cols=116 Identities=8% Similarity=0.064 Sum_probs=88.0
Q ss_pred CChhHHHHHHHHHh---hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 24 KEPDVGEFISALAA---GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 24 ~~p~~~~~L~~La~---~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
..|+...++..+.. ..+..+|||+||| +|..++.|+.. + +.+|+++|.+ +++++.|++|++ ++.++++++
T Consensus 104 pr~~te~lv~~~l~~~~~~~~~~vLDlG~G-sG~~~~~la~~-~--~~~v~~vDis-~~al~~A~~n~~~~~l~~~v~~~ 178 (284)
T 1nv8_A 104 PRPETEELVELALELIRKYGIKTVADIGTG-SGAIGVSVAKF-S--DAIVFATDVS-SKAVEIARKNAERHGVSDRFFVR 178 (284)
T ss_dssp CCTTHHHHHHHHHHHHHHHTCCEEEEESCT-TSHHHHHHHHH-S--SCEEEEEESC-HHHHHHHHHHHHHTTCTTSEEEE
T ss_pred cChhHHHHHHHHHHHhcccCCCEEEEEeCc-hhHHHHHHHHC-C--CCEEEEEECC-HHHHHHHHHHHHHcCCCCceEEE
Confidence 44555555554443 2356799999997 99999999987 3 6899999999 999999999997 676679999
Q ss_pred EcchhhhhhhcCCCc---cEEEEcCCCCC--------------------ccHHHHHHHHH-hhcCCCCCCEEEEEe
Q 042616 99 KGDAQKLLMGDYRGA---DFVLIDCNIDI--------------------DGHKNVFRAAK-ESVMHGSGAGVIVGY 150 (220)
Q Consensus 99 ~gda~~~L~~~~~~~---D~VfiD~~k~~--------------------~~y~~~l~~l~-~~~~L~~~Ggviv~d 150 (220)
++|+.+.++ ++| |+|+.+.+--. .+-...++.+. +. |+| ||.+++.
T Consensus 179 ~~D~~~~~~---~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~--l~p-gG~l~~e 248 (284)
T 1nv8_A 179 KGEFLEPFK---EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRY--DTS-GKIVLME 248 (284)
T ss_dssp ESSTTGGGG---GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHC--CCT-TCEEEEE
T ss_pred ECcchhhcc---cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhc--CCC-CCEEEEE
Confidence 999998664 367 99999854300 00126788888 87 765 8888774
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.6e-11 Score=107.99 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=87.3
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--cc-CCcEEEEEcchhhhhhhc--
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RY-ANCIEFVKGDAQKLLMGD-- 109 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~-~~~Ve~v~gda~~~L~~~-- 109 (220)
++...+.++|||+||| +|..++.+|... .++|++||.+ +.+++.|++|++ ++ .++++++++|+.+.++.+
T Consensus 215 l~~~~~~~~VLDl~cG-~G~~sl~la~~g---~~~V~~vD~s-~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~ 289 (396)
T 3c0k_A 215 TRRYVENKRVLNCFSY-TGGFAVSALMGG---CSQVVSVDTS-QEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD 289 (396)
T ss_dssp HHHHCTTCEEEEESCT-TCSHHHHHHHTT---CSEEEEEESC-HHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHhhCCCeEEEeecc-CCHHHHHHHHCC---CCEEEEEECC-HHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHh
Confidence 3334678899999997 999999998741 3699999999 999999999997 66 558999999999987653
Q ss_pred -CCCccEEEEcCCCCC----------ccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 110 -YRGADFVLIDCNIDI----------DGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 110 -~~~~D~VfiD~~k~~----------~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
...||+|++|++.-. ..+.+.+..+.+. |+| ||++++.+
T Consensus 290 ~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~l~~~~ 339 (396)
T 3c0k_A 290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQL--LNE-GGILLTFS 339 (396)
T ss_dssp TTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHT--EEE-EEEEEEEE
T ss_pred cCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHh--cCC-CcEEEEEe
Confidence 358999999986511 3567888888888 876 77766643
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-11 Score=108.53 Aligned_cols=103 Identities=16% Similarity=0.108 Sum_probs=84.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc---CCCcc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD---YRGAD 114 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~---~~~~D 114 (220)
+.++|||+||| +|..++.+|.. ..++|+++|.+ +.+++.|++|++ ++.++++++++|+.+.++.+ ...||
T Consensus 217 ~~~~VLDl~~G-~G~~~~~la~~---g~~~v~~vD~s-~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD 291 (396)
T 2as0_A 217 PGDRVLDVFTY-TGGFAIHAAIA---GADEVIGIDKS-PRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFD 291 (396)
T ss_dssp TTCEEEETTCT-TTHHHHHHHHT---TCSEEEEEESC-HHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEecCC-CCHHHHHHHHC---CCCEEEEEeCC-HHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCC
Confidence 67899999997 99999999874 14699999999 999999999997 66458999999999987643 46899
Q ss_pred EEEEcCCCCC----------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 115 FVLIDCNIDI----------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 115 ~VfiD~~k~~----------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+|++|++.-. ..+.+++..+.+. |+| ||++++-
T Consensus 292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~lv~~ 334 (396)
T 2as0_A 292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNL--VKD-GGILVTC 334 (396)
T ss_dssp EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTT--EEE-EEEEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHh--cCC-CcEEEEE
Confidence 9999987611 3467788888888 876 8865554
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=5e-11 Score=108.42 Aligned_cols=101 Identities=13% Similarity=0.073 Sum_probs=81.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.++|||+||| +|..|+.+|.. +.+|++||.+ +.+++.|++|++ ++.. ++.++|+.+.++...+.||+|++
T Consensus 215 g~~VLDlg~G-tG~~sl~~a~~----ga~V~avDis-~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~~~~fD~Ii~ 286 (393)
T 4dmg_A 215 GERVLDVYSY-VGGFALRAARK----GAYALAVDKD-LEALGVLDQAALRLGLRV--DIRHGEALPTLRGLEGPFHHVLL 286 (393)
T ss_dssp TCEEEEESCT-TTHHHHHHHHT----TCEEEEEESC-HHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTCCCCEEEEEE
T ss_pred CCeEEEcccc-hhHHHHHHHHc----CCeEEEEECC-HHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHhcCCCCEEEE
Confidence 7899999996 99999999874 5569999999 999999999997 6643 46699999998765555999999
Q ss_pred cCCCCC----------ccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 119 DCNIDI----------DGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 119 D~~k~~----------~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|++.-. ..|.++++.+.+. |+| ||+++.-..
T Consensus 287 dpP~f~~~~~~~~~~~~~~~~ll~~a~~~--Lkp-GG~Lv~~s~ 327 (393)
T 4dmg_A 287 DPPTLVKRPEELPAMKRHLVDLVREALRL--LAE-EGFLWLSSC 327 (393)
T ss_dssp CCCCCCSSGGGHHHHHHHHHHHHHHHHHT--EEE-EEEEEEEEC
T ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHHHHh--cCC-CCEEEEEEC
Confidence 987411 3567888888888 876 888874433
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-11 Score=99.81 Aligned_cols=110 Identities=11% Similarity=0.032 Sum_probs=85.8
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhh
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~ 108 (220)
.+++..+....++.+|||+||| +|..+..|+.. +.+|+++|.+ +.+++.|++++... .+++++++|+.+..+
T Consensus 40 ~~~l~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~----~~~v~~vD~s-~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~- 111 (216)
T 3ofk_A 40 TQLLRLSLSSGAVSNGLEIGCA-AGAFTEKLAPH----CKRLTVIDVM-PRAIGRACQRTKRW-SHISWAATDILQFST- 111 (216)
T ss_dssp HHHHHHHTTTSSEEEEEEECCT-TSHHHHHHGGG----EEEEEEEESC-HHHHHHHHHHTTTC-SSEEEEECCTTTCCC-
T ss_pred HHHHHHHcccCCCCcEEEEcCC-CCHHHHHHHHc----CCEEEEEECC-HHHHHHHHHhcccC-CCeEEEEcchhhCCC-
Confidence 3555555556667899999997 99999998875 5699999999 99999999998743 489999999988653
Q ss_pred cCCCccEEEEcCCCC----CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 109 DYRGADFVLIDCNID----IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 109 ~~~~~D~VfiD~~k~----~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.++||+|+...... .......++.+.+. |+| ||++++.
T Consensus 112 -~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~--L~p-gG~l~~~ 153 (216)
T 3ofk_A 112 -AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKM--LAP-GGHLVFG 153 (216)
T ss_dssp -SCCEEEEEEESCGGGSSSHHHHHHHHHHHHHT--EEE-EEEEEEE
T ss_pred -CCCccEEEEccHHHhCCCHHHHHHHHHHHHHH--cCC-CCEEEEE
Confidence 57899999874331 02335678999998 876 8887774
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.4e-11 Score=105.93 Aligned_cols=101 Identities=12% Similarity=0.076 Sum_probs=84.0
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
..+.+.|||+||| +|++|+.+|... ..+|+++|.| |.+++.+++|++ ++.++|+++++|+.++++ .+.||.
T Consensus 123 ~~~g~~VlD~~aG-~G~~~i~~a~~g---~~~V~avD~n-p~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~--~~~~D~ 195 (278)
T 3k6r_A 123 AKPDELVVDMFAG-IGHLSLPIAVYG---KAKVIAIEKD-PYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--ENIADR 195 (278)
T ss_dssp CCTTCEEEETTCT-TTTTTHHHHHHT---CCEEEEECCC-HHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--CSCEEE
T ss_pred cCCCCEEEEecCc-CcHHHHHHHHhc---CCeEEEEECC-HHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc--ccCCCE
Confidence 3557899999997 999999888752 3699999999 999999999998 888899999999999775 378999
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
|++|.+. . ..++++.+.+. |++ ||+|.++.
T Consensus 196 Vi~~~p~--~-~~~~l~~a~~~--lk~-gG~ih~~~ 225 (278)
T 3k6r_A 196 ILMGYVV--R-THEFIPKALSI--AKD-GAIIHYHN 225 (278)
T ss_dssp EEECCCS--S-GGGGHHHHHHH--EEE-EEEEEEEE
T ss_pred EEECCCC--c-HHHHHHHHHHH--cCC-CCEEEEEe
Confidence 9999876 2 24567777777 765 99887764
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.3e-11 Score=99.00 Aligned_cols=105 Identities=10% Similarity=0.092 Sum_probs=82.7
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
..++.+|||+||| +|..+..|+...+ +.+++++|++ +.+++.|++++.... +++++++|+.+.... ++||+|+
T Consensus 42 ~~~~~~vLDiG~G-~G~~~~~l~~~~~--~~~v~~vD~s-~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~--~~fD~v~ 114 (234)
T 3dtn_A 42 DTENPDILDLGAG-TGLLSAFLMEKYP--EATFTLVDMS-EKMLEIAKNRFRGNL-KVKYIEADYSKYDFE--EKYDMVV 114 (234)
T ss_dssp SCSSCEEEEETCT-TSHHHHHHHHHCT--TCEEEEEESC-HHHHHHHHHHTCSCT-TEEEEESCTTTCCCC--SCEEEEE
T ss_pred CCCCCeEEEecCC-CCHHHHHHHHhCC--CCeEEEEECC-HHHHHHHHHhhccCC-CEEEEeCchhccCCC--CCceEEE
Confidence 4567899999997 9999999998764 6899999999 999999999987442 899999999885433 7899999
Q ss_pred EcCCCCCc---cHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 118 IDCNIDID---GHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 118 iD~~k~~~---~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.......- .....++.+.+. |+| ||.+++-+.
T Consensus 115 ~~~~l~~~~~~~~~~~l~~~~~~--Lkp-gG~l~~~~~ 149 (234)
T 3dtn_A 115 SALSIHHLEDEDKKELYKRSYSI--LKE-SGIFINADL 149 (234)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHH--EEE-EEEEEEEEE
T ss_pred EeCccccCCHHHHHHHHHHHHHh--cCC-CcEEEEEEe
Confidence 88654111 122478999998 887 777665443
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-11 Score=108.37 Aligned_cols=102 Identities=17% Similarity=0.083 Sum_probs=84.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc---CCCcc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD---YRGAD 114 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~---~~~~D 114 (220)
+.++|||+||| +|..++.+|.. +.+|+++|.+ +.+++.|++|++ ++. +++++++|+.+.++.+ ..+||
T Consensus 209 ~~~~VLDlg~G-~G~~~~~la~~----~~~v~~vD~s-~~~~~~a~~n~~~n~~~-~~~~~~~d~~~~~~~~~~~~~~fD 281 (382)
T 1wxx_A 209 RGERALDVFSY-AGGFALHLALG----FREVVAVDSS-AEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFD 281 (382)
T ss_dssp CEEEEEEETCT-TTHHHHHHHHH----EEEEEEEESC-HHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeeec-cCHHHHHHHHh----CCEEEEEECC-HHHHHHHHHHHHHcCCC-CceEEECCHHHHHHHHHhcCCCee
Confidence 67899999997 99999999986 4799999999 999999999997 664 4999999999988654 46899
Q ss_pred EEEEcCCCCC----------ccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 115 FVLIDCNIDI----------DGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 115 ~VfiD~~k~~----------~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+|++|++.-. ..|.++++.+.+. |+| ||++++..
T Consensus 282 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~l~~~~ 325 (382)
T 1wxx_A 282 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKL--LKE-GGILATAS 325 (382)
T ss_dssp EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHT--EEE-EEEEEEEE
T ss_pred EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHh--cCC-CCEEEEEE
Confidence 9999987511 3467788888888 876 77766543
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-11 Score=98.10 Aligned_cols=114 Identities=6% Similarity=-0.047 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcch
Q 042616 26 PDVGEFISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDA 102 (220)
Q Consensus 26 p~~~~~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda 102 (220)
+....++..+.. ..+..+|||+||| +|..++.|+.. ...+|+++|.+ +.+++.|++++. ++.+ ++++++|+
T Consensus 45 ~~~~~~~~~l~~~~~~~~~vLDiG~G-~G~~~~~l~~~---~~~~v~~vD~s-~~~~~~a~~~~~~~~~~~-v~~~~~d~ 118 (205)
T 3grz_A 45 QTTQLAMLGIERAMVKPLTVADVGTG-SGILAIAAHKL---GAKSVLATDIS-DESMTAAEENAALNGIYD-IALQKTSL 118 (205)
T ss_dssp HHHHHHHHHHHHHCSSCCEEEEETCT-TSHHHHHHHHT---TCSEEEEEESC-HHHHHHHHHHHHHTTCCC-CEEEESST
T ss_pred ccHHHHHHHHHHhccCCCEEEEECCC-CCHHHHHHHHC---CCCEEEEEECC-HHHHHHHHHHHHHcCCCc-eEEEeccc
Confidence 344455555544 3457899999997 89999998863 24699999999 999999999997 5533 99999999
Q ss_pred hhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 103 QKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+.. .++||+|+.+... ..+...++.+.+. |+| ||.+++....
T Consensus 119 ~~~~---~~~fD~i~~~~~~--~~~~~~l~~~~~~--L~~-gG~l~~~~~~ 161 (205)
T 3grz_A 119 LADV---DGKFDLIVANILA--EILLDLIPQLDSH--LNE-DGQVIFSGID 161 (205)
T ss_dssp TTTC---CSCEEEEEEESCH--HHHHHHGGGSGGG--EEE-EEEEEEEEEE
T ss_pred cccC---CCCceEEEECCcH--HHHHHHHHHHHHh--cCC-CCEEEEEecC
Confidence 8754 3789999999877 6677888888888 876 8887775433
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-10 Score=107.45 Aligned_cols=173 Identities=12% Similarity=-0.019 Sum_probs=109.8
Q ss_pred hhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHH-------HHHhc--ccC-CcE
Q 042616 26 PDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDAS-------KKSLG--RYA-NCI 95 (220)
Q Consensus 26 p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~A-------r~~l~--g~~-~~V 95 (220)
|.....+..++...+..+||||||| +|+.++.||...+ ..+|++||.+ +..++.| +++++ |+. ++|
T Consensus 228 p~~v~~ml~~l~l~~g~~VLDLGCG-sG~la~~LA~~~g--~~~V~GVDis-~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV 303 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKGDTFMDLGSG-VGNCVVQAALECG--CALSFGCEIM-DDASDLTILQYEELKKRCKLYGMRLNNV 303 (433)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEESCT-TSHHHHHHHHHHC--CSEEEEEECC-HHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCC-cCHHHHHHHHHCC--CCEEEEEeCC-HHHHHHHHHhHHHHHHHHHHcCCCCCce
Confidence 4444444444466678899999997 9999999998654 3699999999 9999999 77775 543 689
Q ss_pred EEEEcchhhh---hhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCccceEEEeeecCCcE
Q 042616 96 EFVKGDAQKL---LMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWRGYKTHFLPIGEGL 172 (220)
Q Consensus 96 e~v~gda~~~---L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~~~~~~s~~lPig~Gl 172 (220)
+++++|.... ++...++||+||+....-..+....++.+.+. |+| ||.||+.+.+.+..|+--......+.+.+
T Consensus 304 ~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~--LKp-GG~lVi~d~f~p~~~~i~~~~l~~i~~~~ 380 (433)
T 1u2z_A 304 EFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQT--AKV-GCKIISLKSLRSLTYQINFYNVENIFNRL 380 (433)
T ss_dssp EEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTT--CCT-TCEEEESSCSSCTTCCCCSSSTTCGGGGE
T ss_pred EEEEcCccccccccccccCCCCEEEEeCccccccHHHHHHHHHHh--CCC-CeEEEEeeccCCcccccccccccchhccc
Confidence 9999865421 21113689999986432114567778888888 876 89888887765442220000111233445
Q ss_pred EEEEEeecCCCC--CCCcCcCceEecccCCCceeE
Q 042616 173 LVTRIGENSDVG--GGRKRSRWVVTVDKCTGEEHV 205 (220)
Q Consensus 173 ~v~~~~~~~~~~--~~~~~~~w~~~~d~~~~~~~~ 205 (220)
.+..+..-.+.. ....-+-|+-.|++.-=|+.+
T Consensus 381 ~v~~~~~~~~~vsW~~~~~~yyl~tv~~~~~e~~~ 415 (433)
T 1u2z_A 381 KVQRYDLKEDSVSWTHSGGEYYISTVMEDVDESLF 415 (433)
T ss_dssp EEEEEECCTTCBTTBSSCCEEEEEEECSSCCGGGS
T ss_pred chheecccccccccccCCccEEEEEechhhhHhhh
Confidence 555553222111 123345566666665555443
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.9e-11 Score=98.43 Aligned_cols=104 Identities=13% Similarity=-0.033 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~~~~~D~V 116 (220)
.+..+|||+||| +|..+..|+....+ +++|++||.+ +.+++.+.++.+.. .+++++++|+.+. ++...++||+|
T Consensus 76 ~~~~~vLDlG~G-~G~~~~~la~~~g~-~~~v~gvD~s-~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V 151 (233)
T 2ipx_A 76 KPGAKVLYLGAA-SGTTVSHVSDIVGP-DGLVYAVEFS-HRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVI 151 (233)
T ss_dssp CTTCEEEEECCT-TSHHHHHHHHHHCT-TCEEEEECCC-HHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEE
T ss_pred CCCCEEEEEccc-CCHHHHHHHHHhCC-CcEEEEEECC-HHHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEE
Confidence 456799999997 99999999988644 5899999999 98877777776532 6799999999874 34335789999
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.|... ......+++.+.+. |+| ||.+++.
T Consensus 152 ~~~~~~-~~~~~~~~~~~~~~--Lkp-gG~l~i~ 181 (233)
T 2ipx_A 152 FADVAQ-PDQTRIVALNAHTF--LRN-GGHFVIS 181 (233)
T ss_dssp EECCCC-TTHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred EEcCCC-ccHHHHHHHHHHHH--cCC-CeEEEEE
Confidence 999875 13335557778888 876 8887773
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-11 Score=110.46 Aligned_cols=102 Identities=13% Similarity=0.037 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCc-EEEEEcchhhhhh-hcCCCcc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANC-IEFVKGDAQKLLM-GDYRGAD 114 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~-Ve~v~gda~~~L~-~~~~~~D 114 (220)
.+..+|||++|| +|..++.+|..++. .++|+++|.+ +.+++.+++|++ ++.++ ++++++|+.+++. .....||
T Consensus 51 ~~g~~VLDlfaG-tG~~sl~aa~~~~g-a~~V~avDi~-~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD 127 (392)
T 3axs_A 51 GRPVKVADPLSA-SGIRAIRFLLETSC-VEKAYANDIS-SKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFD 127 (392)
T ss_dssp CSCEEEEESSCT-TSHHHHHHHHHCSC-EEEEEEECSC-HHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEE
T ss_pred CCCCEEEECCCc-ccHHHHHHHHhCCC-CCEEEEEECC-HHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCc
Confidence 346899999996 99999999886431 2789999999 999999999998 77666 9999999999987 6556899
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+||+|+ . ....++++.+.+. |++ ||+|++
T Consensus 128 ~V~lDP-~--g~~~~~l~~a~~~--Lk~-gGll~~ 156 (392)
T 3axs_A 128 YVDLDP-F--GTPVPFIESVALS--MKR-GGILSL 156 (392)
T ss_dssp EEEECC-S--SCCHHHHHHHHHH--EEE-EEEEEE
T ss_pred EEEECC-C--cCHHHHHHHHHHH--hCC-CCEEEE
Confidence 999999 3 4556789999888 775 888776
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-11 Score=103.57 Aligned_cols=119 Identities=16% Similarity=0.152 Sum_probs=91.1
Q ss_pred hhHHHHHH-HHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh
Q 042616 26 PDVGEFIS-ALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK 104 (220)
Q Consensus 26 p~~~~~L~-~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~ 104 (220)
+...+++. .+....++.+||||||| +|..++.|+...+. +.+|+++|++ +.+++.|++++.....+++++++|+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~v~gvD~s-~~~~~~a~~~~~~~~~~v~~~~~d~~~ 83 (284)
T 3gu3_A 7 DDYVSFLVNTVWKITKPVHIVDYGCG-YGYLGLVLMPLLPE-GSKYTGIDSG-ETLLAEARELFRLLPYDSEFLEGDATE 83 (284)
T ss_dssp HHHHHHHHHTTSCCCSCCEEEEETCT-TTHHHHHHTTTSCT-TCEEEEEESC-HHHHHHHHHHHHSSSSEEEEEESCTTT
T ss_pred hHHHHHHHHHHhccCCCCeEEEecCC-CCHHHHHHHHhCCC-CCEEEEEECC-HHHHHHHHHHHHhcCCceEEEEcchhh
Confidence 34433333 33345678999999997 99999999987664 6899999999 999999999987433489999999987
Q ss_pred hhhhcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 105 LLMGDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
. +. .++||+|+...-. ...+....++.+.+. |+| ||.+++-+.
T Consensus 84 ~-~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~--Lkp-gG~l~~~~~ 127 (284)
T 3gu3_A 84 I-EL-NDKYDIAICHAFLLHMTTPETMLQKMIHS--VKK-GGKIICFEP 127 (284)
T ss_dssp C-CC-SSCEEEEEEESCGGGCSSHHHHHHHHHHT--EEE-EEEEEEEEC
T ss_pred c-Cc-CCCeeEEEECChhhcCCCHHHHHHHHHHH--cCC-CCEEEEEec
Confidence 4 33 4689999987653 114668899999998 887 777775443
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=9.4e-11 Score=100.18 Aligned_cols=117 Identities=8% Similarity=-0.042 Sum_probs=87.5
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-------------
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG------------- 89 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~------------- 89 (220)
...|...+++..+....+..+|||+||| +|..+.+||.. |.+|++||.+ +.+++.|++..+
T Consensus 51 ~~~~~l~~~~~~~~~~~~~~~vLD~GCG-~G~~~~~La~~----G~~V~gvD~S-~~~i~~a~~~~~~~~~~~~~~~~~~ 124 (252)
T 2gb4_A 51 QGHQLLKKHLDTFLKGQSGLRVFFPLCG-KAIEMKWFADR----GHTVVGVEIS-EIGIREFFAEQNLSYTEEPLAEIAG 124 (252)
T ss_dssp TCCHHHHHHHHHHHTTCCSCEEEETTCT-TCTHHHHHHHT----TCEEEEECSC-HHHHHHHHHHTTCCEEEEECTTSTT
T ss_pred CCCHHHHHHHHHhccCCCCCeEEEeCCC-CcHHHHHHHHC----CCeEEEEECC-HHHHHHHHHhccccccccccccccc
Confidence 4556667777666554577899999997 99999999974 6799999999 999999987653
Q ss_pred -----ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 90 -----RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 90 -----g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
....+|+++++|+.+.-+...++||+|+.-+.- ....-..+++.+.+. |+| ||.++
T Consensus 125 ~~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~--Lkp-GG~l~ 188 (252)
T 2gb4_A 125 AKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSL--LRK-EFQYL 188 (252)
T ss_dssp CEEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHT--EEE-EEEEE
T ss_pred ccccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHH--cCC-CeEEE
Confidence 012579999999988543323789999843321 113446789999998 886 88764
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.5e-11 Score=100.24 Aligned_cols=114 Identities=8% Similarity=-0.050 Sum_probs=87.0
Q ss_pred HHHHHHHhhCC-CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhh
Q 042616 30 EFISALAAGNN-AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLL 106 (220)
Q Consensus 30 ~~L~~La~~~~-a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L 106 (220)
.-|.+++..-+ ..+|+||||| +|+.++.||...+ .++|+++|.+ +..++.|++|++ ++.++|++++||+.+.+
T Consensus 10 ~RL~~i~~~v~~g~~VlDIGtG-sG~l~i~la~~~~--~~~V~AvDi~-~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~ 85 (230)
T 3lec_A 10 KRLQKVANYVPKGARLLDVGSD-HAYLPIFLLQMGY--CDFAIAGEVV-NGPYQSALKNVSEHGLTSKIDVRLANGLSAF 85 (230)
T ss_dssp HHHHHHHTTSCTTEEEEEETCS-TTHHHHHHHHTTC--EEEEEEEESS-HHHHHHHHHHHHHTTCTTTEEEEECSGGGGC
T ss_pred HHHHHHHHhCCCCCEEEEECCc-hHHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHHHHHcCCCCcEEEEECchhhcc
Confidence 34556666544 5689999997 9999999997532 5799999999 999999999997 78788999999999877
Q ss_pred hhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 107 MGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+. .++||.|++-+-- .....+.++..... |.+.|-+|+.-|
T Consensus 86 ~~-~~~~D~IviaGmG-g~lI~~IL~~~~~~--l~~~~~lIlqp~ 126 (230)
T 3lec_A 86 EE-ADNIDTITICGMG-GRLIADILNNDIDK--LQHVKTLVLQPN 126 (230)
T ss_dssp CG-GGCCCEEEEEEEC-HHHHHHHHHHTGGG--GTTCCEEEEEES
T ss_pred cc-ccccCEEEEeCCc-hHHHHHHHHHHHHH--hCcCCEEEEECC
Confidence 43 2379999986543 13457778888777 766444455554
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-10 Score=102.16 Aligned_cols=114 Identities=10% Similarity=0.038 Sum_probs=86.3
Q ss_pred HHHHHHHh--hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----c-cCCcEEEEEcch
Q 042616 30 EFISALAA--GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----R-YANCIEFVKGDA 102 (220)
Q Consensus 30 ~~L~~La~--~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g-~~~~Ve~v~gda 102 (220)
++|..++. ..++++||||||| .|..+..+++.. ...+|++||+| +..++.|++++. + ...+++++++|+
T Consensus 83 e~l~~~~l~~~~~~~~VLdiG~G-~G~~~~~l~~~~--~~~~v~~vDid-~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~ 158 (304)
T 3bwc_A 83 EVLGHTSLCSHPKPERVLIIGGG-DGGVLREVLRHG--TVEHCDLVDID-GEVMEQSKQHFPQISRSLADPRATVRVGDG 158 (304)
T ss_dssp HHHHHHHHTTSSSCCEEEEEECT-TSHHHHHHHTCT--TCCEEEEEESC-HHHHHHHHHHCHHHHGGGGCTTEEEEESCH
T ss_pred HHHhhhhhhcCCCCCeEEEEcCC-CCHHHHHHHhCC--CCCEEEEEECC-HHHHHHHHHHhHHhhcccCCCcEEEEECcH
Confidence 44544432 3568999999996 899999888642 25799999999 999999999883 2 246799999999
Q ss_pred hhhhhh-cCCCccEEEEcCCCCC----ccH-HHHHHHHHhhcCCCCCCEEEEEe
Q 042616 103 QKLLMG-DYRGADFVLIDCNIDI----DGH-KNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 103 ~~~L~~-~~~~~D~VfiD~~k~~----~~y-~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+.+.. ..++||+|++|..... ..| .++++.+.+. |+| ||++++.
T Consensus 159 ~~~~~~~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~--Lkp-gG~lv~~ 209 (304)
T 3bwc_A 159 LAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRI--LKP-DGICCNQ 209 (304)
T ss_dssp HHHHHSSCTTCEEEEEEECC---------CCHHHHHHHHHH--EEE-EEEEEEE
T ss_pred HHHHHhccCCceeEEEECCCCccccchhhhHHHHHHHHHHh--cCC-CcEEEEe
Confidence 998754 2578999999986411 111 5889999998 886 8888775
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.21 E-value=8.5e-11 Score=99.87 Aligned_cols=104 Identities=10% Similarity=-0.040 Sum_probs=77.5
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh--hcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM--GDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~--~~~~~~D~ 115 (220)
..+..+|||+||| +|+.|..||..+.+ .|+|+++|.+ +.+++...+..+.. .+|+++++|+..... .+.++||+
T Consensus 74 l~~g~~VLDlG~G-tG~~t~~la~~v~~-~G~V~avD~s-~~~l~~l~~~a~~r-~nv~~i~~Da~~~~~~~~~~~~~D~ 149 (232)
T 3id6_C 74 IRKGTKVLYLGAA-SGTTISHVSDIIEL-NGKAYGVEFS-PRVVRELLLVAQRR-PNIFPLLADARFPQSYKSVVENVDV 149 (232)
T ss_dssp CCTTCEEEEETCT-TSHHHHHHHHHHTT-TSEEEEEECC-HHHHHHHHHHHHHC-TTEEEEECCTTCGGGTTTTCCCEEE
T ss_pred CCCCCEEEEEeec-CCHHHHHHHHHhCC-CCEEEEEECc-HHHHHHHHHHhhhc-CCeEEEEcccccchhhhccccceEE
Confidence 4567999999996 99999999998776 7999999999 88765444333322 579999999976321 22468999
Q ss_pred EEEcCCCCCccHHHHHH-HHHhhcCCCCCCEEEEEe
Q 042616 116 VLIDCNIDIDGHKNVFR-AAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~-~l~~~~~L~~~Ggviv~d 150 (220)
||+|... .+-.+.+. .+.+. |+| ||.+++-
T Consensus 150 I~~d~a~--~~~~~il~~~~~~~--Lkp-GG~lvis 180 (232)
T 3id6_C 150 LYVDIAQ--PDQTDIAIYNAKFF--LKV-NGDMLLV 180 (232)
T ss_dssp EEECCCC--TTHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred EEecCCC--hhHHHHHHHHHHHh--CCC-CeEEEEE
Confidence 9999987 66666554 44446 776 8887753
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-11 Score=105.05 Aligned_cols=95 Identities=8% Similarity=0.011 Sum_probs=79.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc-CCcEEEEEcchhhhhhhcCCCc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY-ANCIEFVKGDAQKLLMGDYRGA 113 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~-~~~Ve~v~gda~~~L~~~~~~~ 113 (220)
.++++||||||| +|+++..+++. . ++|++||+| +++++.|++++. ++ ..+++++.+|+.+++ ++|
T Consensus 71 ~~~~~VL~iG~G-~G~~~~~ll~~---~-~~v~~veid-~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----~~f 140 (262)
T 2cmg_A 71 KELKEVLIVDGF-DLELAHQLFKY---D-THIDFVQAD-EKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----KKY 140 (262)
T ss_dssp SCCCEEEEESSC-CHHHHHHHTTS---S-CEEEEECSC-HHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----CCE
T ss_pred CCCCEEEEEeCC-cCHHHHHHHhC---C-CEEEEEECC-HHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----hhC
Confidence 467999999986 89998887764 2 799999999 999999999884 23 357999999998865 689
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+|++|... . ..+++.+.+. |+| ||++++.
T Consensus 141 D~Ii~d~~d--p--~~~~~~~~~~--L~p-gG~lv~~ 170 (262)
T 2cmg_A 141 DLIFCLQEP--D--IHRIDGLKRM--LKE-DGVFISV 170 (262)
T ss_dssp EEEEESSCC--C--HHHHHHHHTT--EEE-EEEEEEE
T ss_pred CEEEECCCC--h--HHHHHHHHHh--cCC-CcEEEEE
Confidence 999999765 3 2488999998 886 9998885
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=6.2e-11 Score=103.08 Aligned_cols=105 Identities=10% Similarity=-0.007 Sum_probs=84.1
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
..+..+||||||| +|..++.|+... +.+|++||.+ +++++.|+++++ ++.++++++++|+.+. +...+.||+
T Consensus 115 ~~~~~~vLDiGcG-~G~~~~~la~~~---~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~ 188 (312)
T 3vc1_A 115 AGPDDTLVDAGCG-RGGSMVMAHRRF---GSRVEGVTLS-AAQADFGNRRARELRIDDHVRSRVCNMLDT-PFDKGAVTA 188 (312)
T ss_dssp CCTTCEEEEESCT-TSHHHHHHHHHH---CCEEEEEESC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CCCTTCEEE
T ss_pred CCCCCEEEEecCC-CCHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHHHHHcCCCCceEEEECChhcC-CCCCCCEeE
Confidence 4457899999997 999999999864 5799999999 999999999987 6767899999999873 322478999
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
|+...-...-+...+++.+.+. |+| ||.+++-.
T Consensus 189 V~~~~~l~~~~~~~~l~~~~~~--Lkp-gG~l~~~~ 221 (312)
T 3vc1_A 189 SWNNESTMYVDLHDLFSEHSRF--LKV-GGRYVTIT 221 (312)
T ss_dssp EEEESCGGGSCHHHHHHHHHHH--EEE-EEEEEEEE
T ss_pred EEECCchhhCCHHHHHHHHHHH--cCC-CcEEEEEE
Confidence 9976543223478899999999 887 77766543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-10 Score=93.10 Aligned_cols=105 Identities=12% Similarity=-0.008 Sum_probs=83.2
Q ss_pred HHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcC
Q 042616 33 SALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDY 110 (220)
Q Consensus 33 ~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~ 110 (220)
..++...++.+|||+||| +|..+..|+.. +.+++++|.+ +.+++.|++++. ++ .+++++++|+.+.. . .
T Consensus 25 ~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~----~~~v~~vD~s-~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~-~-~ 95 (199)
T 2xvm_A 25 LEAVKVVKPGKTLDLGCG-NGRNSLYLAAN----GYDVDAWDKN-AMSIANVERIKSIENL-DNLHTRVVDLNNLT-F-D 95 (199)
T ss_dssp HHHTTTSCSCEEEEETCT-TSHHHHHHHHT----TCEEEEEESC-HHHHHHHHHHHHHHTC-TTEEEEECCGGGCC-C-C
T ss_pred HHHhhccCCCeEEEEcCC-CCHHHHHHHHC----CCeEEEEECC-HHHHHHHHHHHHhCCC-CCcEEEEcchhhCC-C-C
Confidence 334455678899999997 99999999874 5799999999 999999999986 55 46999999998743 3 5
Q ss_pred CCccEEEEcCCCC---CccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 111 RGADFVLIDCNID---IDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 111 ~~~D~VfiD~~k~---~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
++||+|+...... ..+...+++.+.+. |+| ||.+++
T Consensus 96 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~--L~~-gG~l~~ 134 (199)
T 2xvm_A 96 RQYDFILSTVVLMFLEAKTIPGLIANMQRC--TKP-GGYNLI 134 (199)
T ss_dssp CCEEEEEEESCGGGSCGGGHHHHHHHHHHT--EEE-EEEEEE
T ss_pred CCceEEEEcchhhhCCHHHHHHHHHHHHHh--cCC-CeEEEE
Confidence 7899999875431 13678889999998 886 777544
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.9e-11 Score=98.96 Aligned_cols=115 Identities=15% Similarity=0.061 Sum_probs=85.5
Q ss_pred ChhHH-HHHHHHH-hhCCCCEEEEEcCCchHHHHHHHHHHcCC----CCcEEEEEeCCchhHHHHHHHHhc--cc----C
Q 042616 25 EPDVG-EFISALA-AGNNAQLIVMACSSIAVSRTLALVAAARQ----TGGRVVCILSGVIGDIDASKKSLG--RY----A 92 (220)
Q Consensus 25 ~p~~~-~~L~~La-~~~~a~~ILEIGtg~~G~sTl~LA~A~~~----~~grV~tIE~d~~~~~~~Ar~~l~--g~----~ 92 (220)
.|... .++..+. ...+..+||||||| +|+.+..|+..... ..++|+++|.+ +++++.|++++. ++ .
T Consensus 67 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G-~G~~~~~la~~~~~~~~~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~ 144 (227)
T 1r18_A 67 APHMHAFALEYLRDHLKPGARILDVGSG-SGYLTACFYRYIKAKGVDADTRIVGIEHQ-AELVRRSKANLNTDDRSMLDS 144 (227)
T ss_dssp CHHHHHHHHHHTTTTCCTTCEEEEESCT-TSHHHHHHHHHHHHSCCCTTCEEEEEESC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhhCCCCCEEEEECCC-ccHHHHHHHHhcccccCCccCEEEEEEcC-HHHHHHHHHHHHhcCccccCC
Confidence 55543 4444443 34566899999997 89999999986531 02699999999 999999999986 41 2
Q ss_pred CcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 93 NCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 93 ~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++++++++|+.+.++. .++||+|++++.. ... .+.+.+. |+| ||.+++.
T Consensus 145 ~~v~~~~~d~~~~~~~-~~~fD~I~~~~~~--~~~---~~~~~~~--Lkp-gG~lvi~ 193 (227)
T 1r18_A 145 GQLLIVEGDGRKGYPP-NAPYNAIHVGAAA--PDT---PTELINQ--LAS-GGRLIVP 193 (227)
T ss_dssp TSEEEEESCGGGCCGG-GCSEEEEEECSCB--SSC---CHHHHHT--EEE-EEEEEEE
T ss_pred CceEEEECCcccCCCc-CCCccEEEECCch--HHH---HHHHHHH--hcC-CCEEEEE
Confidence 6899999999885543 3689999999887 443 3566676 766 8877764
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.20 E-value=9.4e-11 Score=97.26 Aligned_cols=101 Identities=12% Similarity=-0.005 Sum_probs=77.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh---hhhcCCCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL---LMGDYRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~---L~~~~~~~D~ 115 (220)
.+..+|||+||| +|+.+..|+...+ .++|++||.+ +.+++.+.+..+.. .+++++++|+.+. .+ ..++||+
T Consensus 56 ~~g~~VLDlGcG-tG~~~~~la~~~~--~~~V~gvD~s-~~~l~~~~~~a~~~-~~v~~~~~d~~~~~~~~~-~~~~fD~ 129 (210)
T 1nt2_A 56 RGDERVLYLGAA-SGTTVSHLADIVD--EGIIYAVEYS-AKPFEKLLELVRER-NNIIPLLFDASKPWKYSG-IVEKVDL 129 (210)
T ss_dssp CSSCEEEEETCT-TSHHHHHHHHHTT--TSEEEEECCC-HHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTT-TCCCEEE
T ss_pred CCCCEEEEECCc-CCHHHHHHHHHcC--CCEEEEEECC-HHHHHHHHHHHhcC-CCeEEEEcCCCCchhhcc-cccceeE
Confidence 456799999997 9999999998765 5899999999 98776665554433 5799999998764 22 2478999
Q ss_pred EEEcCCCCCcc-HHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 116 VLIDCNIDIDG-HKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 116 VfiD~~k~~~~-y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+.|... .. ....++.+.+. |+| ||.+++.
T Consensus 130 V~~~~~~--~~~~~~~l~~~~r~--Lkp-gG~l~i~ 160 (210)
T 1nt2_A 130 IYQDIAQ--KNQIEILKANAEFF--LKE-KGEVVIM 160 (210)
T ss_dssp EEECCCS--TTHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred EEEeccC--hhHHHHHHHHHHHH--hCC-CCEEEEE
Confidence 9999755 33 33458888888 887 8877764
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-10 Score=97.63 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=89.3
Q ss_pred HHHHHHHHhh---CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchh
Q 042616 29 GEFISALAAG---NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQ 103 (220)
Q Consensus 29 ~~~L~~La~~---~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~ 103 (220)
.+++..++.. .+..+||||||| +|..+..|+... +.+|+++|.+ +.+++.|++++. ++.++++++++|+.
T Consensus 47 ~~~~~~l~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~---~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 121 (273)
T 3bus_A 47 DRLTDEMIALLDVRSGDRVLDVGCG-IGKPAVRLATAR---DVRVTGISIS-RPQVNQANARATAAGLANRVTFSYADAM 121 (273)
T ss_dssp HHHHHHHHHHSCCCTTCEEEEESCT-TSHHHHHHHHHS---CCEEEEEESC-HHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCC-CCHHHHHHHHhc---CCEEEEEeCC-HHHHHHHHHHHHhcCCCcceEEEECccc
Confidence 3444444443 467899999997 999999998763 5799999999 999999999986 66678999999998
Q ss_pred hhhhhcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 104 KLLMGDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+ +|...++||+|+.-... .-.+...+++.+.+. |+| ||.+++.+..
T Consensus 122 ~-~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~--L~p-gG~l~i~~~~ 168 (273)
T 3bus_A 122 D-LPFEDASFDAVWALESLHHMPDRGRALREMARV--LRP-GGTVAIADFV 168 (273)
T ss_dssp S-CCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTT--EEE-EEEEEEEEEE
T ss_pred c-CCCCCCCccEEEEechhhhCCCHHHHHHHHHHH--cCC-CeEEEEEEee
Confidence 7 33324689999965533 124678899999998 886 8877766544
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-10 Score=96.74 Aligned_cols=112 Identities=10% Similarity=0.038 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL 105 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~ 105 (220)
....+..+....+..+|||+||| +|..+..|+.. +.+|+++|++ +.+++.|++++. ++ .+++++++|+.+
T Consensus 9 ~~~~~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~----~~~v~~vD~s-~~~~~~a~~~~~~~~~-~~v~~~~~d~~~- 80 (239)
T 1xxl_A 9 SLGLMIKTAECRAEHRVLDIGAG-AGHTALAFSPY----VQECIGVDAT-KEMVEVASSFAQEKGV-ENVRFQQGTAES- 80 (239)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCT-TSHHHHHHGGG----SSEEEEEESC-HHHHHHHHHHHHHHTC-CSEEEEECBTTB-
T ss_pred CcchHHHHhCcCCCCEEEEEccC-cCHHHHHHHHh----CCEEEEEECC-HHHHHHHHHHHHHcCC-CCeEEEeccccc-
Confidence 34444555577888999999997 89999988864 4699999999 999999999986 55 579999999977
Q ss_pred hhhcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 106 LMGDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 106 L~~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++...++||+|+..... .-.+....++.+.+. |+| ||.+++-
T Consensus 81 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~--Lkp-gG~l~~~ 123 (239)
T 1xxl_A 81 LPFPDDSFDIITCRYAAHHFSDVRKAVREVARV--LKQ-DGRFLLV 123 (239)
T ss_dssp CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred CCCCCCcEEEEEECCchhhccCHHHHHHHHHHH--cCC-CcEEEEE
Confidence 44324789999987533 114668889999998 887 7776664
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.3e-11 Score=108.67 Aligned_cols=124 Identities=13% Similarity=0.073 Sum_probs=96.1
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
.+....++++..++...+..+|||+||| +|..|+.|+..++. .++|+++|.+ +.+++.++++++ ++ .+|+++++
T Consensus 242 ~~qd~~s~l~~~~l~~~~g~~VLDlgaG-~G~~t~~la~~~~~-~~~v~a~D~s-~~~l~~~~~~~~~~g~-~~v~~~~~ 317 (450)
T 2yxl_A 242 IVQEEASAVASIVLDPKPGETVVDLAAA-PGGKTTHLAELMKN-KGKIYAFDVD-KMRMKRLKDFVKRMGI-KIVKPLVK 317 (450)
T ss_dssp EECCHHHHHHHHHHCCCTTCEEEESSCT-TCHHHHHHHHHTTT-CSEEEEECSC-HHHHHHHHHHHHHTTC-CSEEEECS
T ss_pred EecCchhHHHHHhcCCCCcCEEEEeCCC-ccHHHHHHHHHcCC-CCEEEEEcCC-HHHHHHHHHHHHHcCC-CcEEEEEc
Confidence 3445566777777777888999999996 89999999988753 5899999999 999999999997 66 57999999
Q ss_pred chhhhhhhcC-CCccEEEEcCCCCCc-------c----------------HHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 101 DAQKLLMGDY-RGADFVLIDCNIDID-------G----------------HKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 101 da~~~L~~~~-~~~D~VfiD~~k~~~-------~----------------y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|+.+..+.+. +.||+|++|++-... + ...+++.+.+. |+| ||.+|.-...
T Consensus 318 D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~--Lkp-GG~lvy~tcs 391 (450)
T 2yxl_A 318 DARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARL--VKP-GGRLLYTTCS 391 (450)
T ss_dssp CTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTT--EEE-EEEEEEEESC
T ss_pred ChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHh--cCC-CcEEEEEeCC
Confidence 9988643333 679999999764111 0 14678888888 876 8887765444
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-10 Score=98.97 Aligned_cols=108 Identities=12% Similarity=0.034 Sum_probs=83.9
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~ 109 (220)
+++..+ ...++.+|||+||| +|..++.|+.. +.+|+++|.+ +.+++.|++++....-+++++++|+.+...
T Consensus 111 ~~~~~~-~~~~~~~vLD~GcG-~G~~~~~l~~~----g~~v~~vD~s-~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-- 181 (286)
T 3m70_A 111 DVVDAA-KIISPCKVLDLGCG-QGRNSLYLSLL----GYDVTSWDHN-ENSIAFLNETKEKENLNISTALYDINAANI-- 181 (286)
T ss_dssp HHHHHH-HHSCSCEEEEESCT-TCHHHHHHHHT----TCEEEEEESC-HHHHHHHHHHHHHTTCCEEEEECCGGGCCC--
T ss_pred HHHHHh-hccCCCcEEEECCC-CCHHHHHHHHC----CCeEEEEECC-HHHHHHHHHHHHHcCCceEEEEeccccccc--
Confidence 444444 34478999999997 99999999875 6799999999 999999999987221289999999988543
Q ss_pred CCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 110 YRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 110 ~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.++||+|+....- +......+++.+.+. |+| ||++++
T Consensus 182 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~l~i 221 (286)
T 3m70_A 182 QENYDFIVSTVVFMFLNRERVPSIIKNMKEH--TNV-GGYNLI 221 (286)
T ss_dssp CSCEEEEEECSSGGGSCGGGHHHHHHHHHHT--EEE-EEEEEE
T ss_pred cCCccEEEEccchhhCCHHHHHHHHHHHHHh--cCC-CcEEEE
Confidence 5789999987632 114567899999998 886 777443
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-10 Score=98.36 Aligned_cols=113 Identities=12% Similarity=0.066 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHhh-CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcch
Q 042616 26 PDVGEFISALAAG-NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDA 102 (220)
Q Consensus 26 p~~~~~L~~La~~-~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda 102 (220)
|.....+..+... .+.++|||+||| +|..++.++.. +.+|+++|.+ +.+++.|+++++ ++ + ++++++|+
T Consensus 105 ~tt~~~~~~l~~~~~~~~~VLDiGcG-~G~l~~~la~~----g~~v~gvDi~-~~~v~~a~~n~~~~~~-~-v~~~~~d~ 176 (254)
T 2nxc_A 105 ETTRLALKALARHLRPGDKVLDLGTG-SGVLAIAAEKL----GGKALGVDID-PMVLPQAEANAKRNGV-R-PRFLEGSL 176 (254)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEETCT-TSHHHHHHHHT----TCEEEEEESC-GGGHHHHHHHHHHTTC-C-CEEEESCH
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCC-CcHHHHHHHHh----CCeEEEEECC-HHHHHHHHHHHHHcCC-c-EEEEECCh
Confidence 3344445555443 567899999997 89999987763 4499999999 999999999987 44 3 99999999
Q ss_pred hhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 103 QKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+.++. ++||+|+.+... ......++.+.+. |+| ||.++...+.
T Consensus 177 ~~~~~~--~~fD~Vv~n~~~--~~~~~~l~~~~~~--Lkp-gG~lils~~~ 220 (254)
T 2nxc_A 177 EAALPF--GPFDLLVANLYA--ELHAALAPRYREA--LVP-GGRALLTGIL 220 (254)
T ss_dssp HHHGGG--CCEEEEEEECCH--HHHHHHHHHHHHH--EEE-EEEEEEEEEE
T ss_pred hhcCcC--CCCCEEEECCcH--HHHHHHHHHHHHH--cCC-CCEEEEEeec
Confidence 886643 689999998766 6678889999998 876 8888775444
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.19 E-value=1e-10 Score=98.49 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=85.3
Q ss_pred hHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhh
Q 042616 27 DVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQK 104 (220)
Q Consensus 27 ~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~ 104 (220)
+...++ ..+...++.+||||||| +|..+..|+.. +++|+++|++ +.+++.|+++++ ++ .+++++++|+.+
T Consensus 25 ~~~~l~-~~l~~~~~~~vLDiGcG-~G~~~~~l~~~----~~~v~gvD~s-~~~l~~a~~~~~~~~~-~~v~~~~~d~~~ 96 (260)
T 1vl5_A 25 DLAKLM-QIAALKGNEEVLDVATG-GGHVANAFAPF----VKKVVAFDLT-EDILKVARAFIEGNGH-QQVEYVQGDAEQ 96 (260)
T ss_dssp CHHHHH-HHHTCCSCCEEEEETCT-TCHHHHHHGGG----SSEEEEEESC-HHHHHHHHHHHHHTTC-CSEEEEECCC-C
T ss_pred HHHHHH-HHhCCCCCCEEEEEeCC-CCHHHHHHHHh----CCEEEEEeCC-HHHHHHHHHHHHhcCC-CceEEEEecHHh
Confidence 333444 44466678999999997 99999988875 4599999999 999999999986 55 479999999987
Q ss_pred hhhhcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 105 LLMGDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+|...++||+|+..... .-.+....++.+.+. |+| ||.+++-
T Consensus 97 -l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~--Lkp-gG~l~~~ 139 (260)
T 1vl5_A 97 -MPFTDERFHIVTCRIAAHHFPNPASFVSEAYRV--LKK-GGQLLLV 139 (260)
T ss_dssp -CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred -CCCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHH--cCC-CCEEEEE
Confidence 34324789999977433 114567899999999 887 7776663
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-10 Score=105.00 Aligned_cols=102 Identities=16% Similarity=0.083 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-c---------------cCCcEEEEEcch
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-R---------------YANCIEFVKGDA 102 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g---------------~~~~Ve~v~gda 102 (220)
.++.+|||+||| +|..++.+|...+ +.+|+++|.+ +++++.|++|++ . --++++++++|+
T Consensus 46 ~~~~~VLDl~aG-tG~~~l~~a~~~~--~~~V~avDi~-~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da 121 (378)
T 2dul_A 46 LNPKIVLDALSA-TGIRGIRFALETP--AEEVWLNDIS-EDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDA 121 (378)
T ss_dssp HCCSEEEESSCT-TSHHHHHHHHHSS--CSEEEEEESC-HHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCH
T ss_pred cCCCEEEECCCc-hhHHHHHHHHhCC--CCeEEEEECC-HHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcH
Confidence 478899999996 9999999998754 4689999999 999999999997 3 113499999999
Q ss_pred hhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 103 QKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+++......||+|++|+.. ...++++.+.+. |++ ||+|.+.
T Consensus 122 ~~~~~~~~~~fD~I~lDP~~---~~~~~l~~a~~~--lk~-gG~l~vt 163 (378)
T 2dul_A 122 NRLMAERHRYFHFIDLDPFG---SPMEFLDTALRS--AKR-RGILGVT 163 (378)
T ss_dssp HHHHHHSTTCEEEEEECCSS---CCHHHHHHHHHH--EEE-EEEEEEE
T ss_pred HHHHHhccCCCCEEEeCCCC---CHHHHHHHHHHh--cCC-CCEEEEE
Confidence 99886645689999999854 457888988888 775 8887664
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.19 E-value=2e-10 Score=95.94 Aligned_cols=112 Identities=17% Similarity=0.178 Sum_probs=85.9
Q ss_pred HHHHHHHHHhh---CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh
Q 042616 28 VGEFISALAAG---NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK 104 (220)
Q Consensus 28 ~~~~L~~La~~---~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~ 104 (220)
..+++..+... .++.+|||+||| +|..++.|+.. +.+|+++|++ +.+++.|++++.....+++++++|+.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~vLDlGcG-~G~~~~~l~~~----~~~v~gvD~s-~~~l~~a~~~~~~~~~~v~~~~~d~~~ 99 (252)
T 1wzn_A 26 EIDFVEEIFKEDAKREVRRVLDLACG-TGIPTLELAER----GYEVVGLDLH-EEMLRVARRKAKERNLKIEFLQGDVLE 99 (252)
T ss_dssp HHHHHHHHHHHTCSSCCCEEEEETCT-TCHHHHHHHHT----TCEEEEEESC-HHHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred HHHHHHHHHHHhcccCCCEEEEeCCC-CCHHHHHHHHC----CCeEEEEECC-HHHHHHHHHHHHhcCCceEEEECChhh
Confidence 45666666554 346899999997 99999998874 6799999999 999999999987322379999999988
Q ss_pred hhhhcCCCccEEEEcCCC----CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 105 LLMGDYRGADFVLIDCNI----DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~~k----~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.. ..++||+|++.... +..+....++.+.+. |+| ||+++++
T Consensus 100 ~~--~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~--L~p-gG~li~~ 144 (252)
T 1wzn_A 100 IA--FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEA--LKP-GGVFITD 144 (252)
T ss_dssp CC--CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred cc--cCCCccEEEEcCCchhcCCHHHHHHHHHHHHHH--cCC-CeEEEEe
Confidence 43 24689999975322 112456788888888 876 8888876
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-10 Score=100.56 Aligned_cols=113 Identities=5% Similarity=-0.033 Sum_probs=88.0
Q ss_pred HHHHHHHHhh---CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchh
Q 042616 29 GEFISALAAG---NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQ 103 (220)
Q Consensus 29 ~~~L~~La~~---~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~ 103 (220)
.+.+..++.. .+..+||||||| +|..++.|+... +.+|++||++ +++++.|++++. ++.++++++++|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~---~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 150 (318)
T 2fk8_A 76 YAKVDLNLDKLDLKPGMTLLDIGCG-WGTTMRRAVERF---DVNVIGLTLS-KNQHARCEQVLASIDTNRSRQVLLQGWE 150 (318)
T ss_dssp HHHHHHHHTTSCCCTTCEEEEESCT-TSHHHHHHHHHH---CCEEEEEESC-HHHHHHHHHHHHTSCCSSCEEEEESCGG
T ss_pred HHHHHHHHHhcCCCCcCEEEEEccc-chHHHHHHHHHC---CCEEEEEECC-HHHHHHHHHHHHhcCCCCceEEEECChH
Confidence 3444455443 456799999997 899999999865 4699999999 999999999986 66678999999987
Q ss_pred hhhhhcCCCccEEEEcCCCC---CccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 104 KLLMGDYRGADFVLIDCNID---IDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k~---~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
++ + ++||+|+....-. ..++..+++.+.+. |+| ||.+++....
T Consensus 151 ~~-~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~--Lkp-gG~l~~~~~~ 196 (318)
T 2fk8_A 151 DF-A---EPVDRIVSIEAFEHFGHENYDDFFKRCFNI--MPA-DGRMTVQSSV 196 (318)
T ss_dssp GC-C---CCCSEEEEESCGGGTCGGGHHHHHHHHHHH--SCT-TCEEEEEEEE
T ss_pred HC-C---CCcCEEEEeChHHhcCHHHHHHHHHHHHHh--cCC-CcEEEEEEec
Confidence 64 3 6899999774220 14678899999999 887 7777765544
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-10 Score=99.47 Aligned_cols=140 Identities=10% Similarity=0.030 Sum_probs=97.7
Q ss_pred HHHHHHhhCC-CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh
Q 042616 31 FISALAAGNN-AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 31 ~L~~La~~~~-a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~ 107 (220)
-|.+++..-+ ..+||||||| +|+.++.||...+ .++|+++|.+ +..++.|++|++ ++.++|+++.+|+.+.++
T Consensus 11 RL~~i~~~v~~g~~VlDIGtG-sG~l~i~la~~~~--~~~V~avDi~-~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~ 86 (244)
T 3gnl_A 11 RLEKVASYITKNERIADIGSD-HAYLPCFAVKNQT--ASFAIAGEVV-DGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE 86 (244)
T ss_dssp HHHHHHTTCCSSEEEEEETCS-TTHHHHHHHHTTS--EEEEEEEESS-HHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC
T ss_pred HHHHHHHhCCCCCEEEEECCc-cHHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHHHHHcCCCceEEEEecchhhccC
Confidence 3555555544 4689999997 9999999998532 5799999999 999999999997 787889999999998774
Q ss_pred hcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC--Ccc---ceE----EEeeecCCcEEEEEEe
Q 042616 108 GDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG--SWR---GYK----THFLPIGEGLLVTRIG 178 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g--~~~---~~~----s~~lPig~Gl~v~~~~ 178 (220)
. ..+||.|++-+-- .....+.++..... |.+.+-+|+.-|.-... .|. +|. ..+..-+.+.+|....
T Consensus 87 ~-~~~~D~IviagmG-g~lI~~IL~~~~~~--L~~~~~lIlq~~~~~~~lr~~L~~~Gf~i~~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 87 K-KDAIDTIVIAGMG-GTLIRTILEEGAAK--LAGVTKLILQPNIAAWQLREWSEQNNWLITSEAILREDNKVYEIMVLA 162 (244)
T ss_dssp G-GGCCCEEEEEEEC-HHHHHHHHHHTGGG--GTTCCEEEEEESSCHHHHHHHHHHHTEEEEEEEEEEETTEEEEEEEEE
T ss_pred c-cccccEEEEeCCc-hHHHHHHHHHHHHH--hCCCCEEEEEcCCChHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEE
Confidence 3 2359999874433 13467788888887 76644455555421111 344 443 3445566666665544
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.18 E-value=9e-11 Score=99.54 Aligned_cols=113 Identities=9% Similarity=0.130 Sum_probs=87.1
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhh
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLL 106 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L 106 (220)
.+++.......+..+||||||| +|..+..|+...+ +++|+++|++ +.+++.|++++. ++ .+++++.+|+.+..
T Consensus 26 ~~~l~~~~~~~~~~~vLDiG~G-~G~~~~~l~~~~~--~~~v~~vD~s-~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~ 100 (276)
T 3mgg_A 26 EKLLHHDTVYPPGAKVLEAGCG-IGAQTVILAKNNP--DAEITSIDIS-PESLEKARENTEKNGI-KNVKFLQANIFSLP 100 (276)
T ss_dssp HHHHHTTCCCCTTCEEEETTCT-TSHHHHHHHHHCT--TSEEEEEESC-HHHHHHHHHHHHHTTC-CSEEEEECCGGGCC
T ss_pred HHHHhhcccCCCCCeEEEecCC-CCHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHHHHHcCC-CCcEEEEcccccCC
Confidence 3333333334567899999997 9999999998743 6899999999 999999999987 55 57999999998743
Q ss_pred hhcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 107 MGDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
...++||+|+..... .-.+....++.+.+. |+| ||++++-
T Consensus 101 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~--L~p-gG~l~~~ 141 (276)
T 3mgg_A 101 -FEDSSFDHIFVCFVLEHLQSPEEALKSLKKV--LKP-GGTITVI 141 (276)
T ss_dssp -SCTTCEEEEEEESCGGGCSCHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred -CCCCCeeEEEEechhhhcCCHHHHHHHHHHH--cCC-CcEEEEE
Confidence 325789999987533 114567889999998 887 7777664
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=95.50 Aligned_cols=114 Identities=10% Similarity=0.068 Sum_probs=88.6
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhh
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLL 106 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L 106 (220)
.+++. .....+..+|||+||| +|..+..|+....+ .++|+++|.+ +.+++.|++++. ++ .+++++++|+.+.
T Consensus 27 ~~~~~-~~~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~~~v~~vD~s-~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~- 100 (219)
T 3dh0_A 27 EKVLK-EFGLKEGMTVLDVGTG-AGFYLPYLSKMVGE-KGKVYAIDVQ-EEMVNYAWEKVNKLGL-KNVEVLKSEENKI- 100 (219)
T ss_dssp HHHHH-HHTCCTTCEEEESSCT-TCTTHHHHHHHHTT-TCEEEEEESC-HHHHHHHHHHHHHHTC-TTEEEEECBTTBC-
T ss_pred HHHHH-HhCCCCCCEEEEEecC-CCHHHHHHHHHhCC-CcEEEEEECC-HHHHHHHHHHHHHcCC-CcEEEEecccccC-
Confidence 34444 3456677899999997 99999999988644 6799999999 999999999986 55 4799999999774
Q ss_pred hhcCCCccEEEEcCCCC-CccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 107 MGDYRGADFVLIDCNID-IDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+...++||+|+...... -.+...+++.+.+. |+| ||.+++-+
T Consensus 101 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~--Lkp-gG~l~i~~ 143 (219)
T 3dh0_A 101 PLPDNTVDFIFMAFTFHELSEPLKFLEELKRV--AKP-FAYLAIID 143 (219)
T ss_dssp SSCSSCEEEEEEESCGGGCSSHHHHHHHHHHH--EEE-EEEEEEEE
T ss_pred CCCCCCeeEEEeehhhhhcCCHHHHHHHHHHH--hCC-CeEEEEEE
Confidence 22246899999876541 13567889999998 887 77766644
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-10 Score=98.75 Aligned_cols=108 Identities=12% Similarity=0.053 Sum_probs=86.1
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
...++.+||||||| +|..+..|+... +.+|++||++ +.+++.|++++. ++.++++++++|+.+ +|...++||
T Consensus 79 ~~~~~~~vLDiGcG-~G~~~~~l~~~~---~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD 152 (297)
T 2o57_A 79 VLQRQAKGLDLGAG-YGGAARFLVRKF---GVSIDCLNIA-PVQNKRNEEYNNQAGLADNITVKYGSFLE-IPCEDNSYD 152 (297)
T ss_dssp CCCTTCEEEEETCT-TSHHHHHHHHHH---CCEEEEEESC-HHHHHHHHHHHHHHTCTTTEEEEECCTTS-CSSCTTCEE
T ss_pred CCCCCCEEEEeCCC-CCHHHHHHHHHh---CCEEEEEeCC-HHHHHHHHHHHHhcCCCcceEEEEcCccc-CCCCCCCEe
Confidence 44567899999997 999999999864 4699999999 999999999986 776789999999987 343246899
Q ss_pred EEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 115 FVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 115 ~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+|+..... .-.+...+++.+.+. |+| ||.+++....
T Consensus 153 ~v~~~~~l~~~~~~~~~l~~~~~~--Lkp-gG~l~~~~~~ 189 (297)
T 2o57_A 153 FIWSQDAFLHSPDKLKVFQECARV--LKP-RGVMAITDPM 189 (297)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHH--EEE-EEEEEEEEEE
T ss_pred EEEecchhhhcCCHHHHHHHHHHH--cCC-CeEEEEEEec
Confidence 99976432 114568899999999 887 7777765443
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.5e-10 Score=97.45 Aligned_cols=112 Identities=8% Similarity=-0.009 Sum_probs=86.9
Q ss_pred HHHHHHHhh---CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhh
Q 042616 30 EFISALAAG---NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQK 104 (220)
Q Consensus 30 ~~L~~La~~---~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~ 104 (220)
+++..++.. .+..+||||||| +|..+..|+... +.+|++||++ ++.++.|++++. ++.++++++++|+.+
T Consensus 51 ~~~~~~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~---~~~v~gvd~s-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 125 (287)
T 1kpg_A 51 AKIDLALGKLGLQPGMTLLDVGCG-WGATMMRAVEKY---DVNVVGLTLS-KNQANHVQQLVANSENLRSKRVLLAGWEQ 125 (287)
T ss_dssp HHHHHHHTTTTCCTTCEEEEETCT-TSHHHHHHHHHH---CCEEEEEESC-HHHHHHHHHHHHTCCCCSCEEEEESCGGG
T ss_pred HHHHHHHHHcCCCCcCEEEEECCc-ccHHHHHHHHHc---CCEEEEEECC-HHHHHHHHHHHHhcCCCCCeEEEECChhh
Confidence 344444443 456799999997 899999999654 4599999999 999999999986 666789999999976
Q ss_pred hhhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 105 LLMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
++ ++||+|+...-- ...++..+++.+.+. |+| ||.+++....
T Consensus 126 -~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~--Lkp-gG~l~~~~~~ 170 (287)
T 1kpg_A 126 -FD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRL--LPA-DGVMLLHTIT 170 (287)
T ss_dssp -CC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHH--SCT-TCEEEEEEEE
T ss_pred -CC---CCeeEEEEeCchhhcChHHHHHHHHHHHHh--cCC-CCEEEEEEec
Confidence 33 789999976422 114678899999999 887 7777765443
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=96.23 Aligned_cols=110 Identities=12% Similarity=0.088 Sum_probs=85.6
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~ 107 (220)
...++..+....++.+||||||| +|..+..|+.. +.+|++||++ +.+++.|++.+.. +++++++|+.+..+
T Consensus 30 ~~~~~~~l~~~~~~~~vLDiGcG-~G~~~~~l~~~----~~~v~gvD~s-~~~~~~a~~~~~~---~v~~~~~d~~~~~~ 100 (250)
T 2p7i_A 30 HPFMVRAFTPFFRPGNLLELGSF-KGDFTSRLQEH----FNDITCVEAS-EEAISHAQGRLKD---GITYIHSRFEDAQL 100 (250)
T ss_dssp HHHHHHHHGGGCCSSCEEEESCT-TSHHHHHHTTT----CSCEEEEESC-HHHHHHHHHHSCS---CEEEEESCGGGCCC
T ss_pred HHHHHHHHHhhcCCCcEEEECCC-CCHHHHHHHHh----CCcEEEEeCC-HHHHHHHHHhhhC---CeEEEEccHHHcCc
Confidence 34455555556678899999997 99999988864 4589999999 9999999998753 79999999988632
Q ss_pred hcCCCccEEEEcCCC-CCccHHHHHHHHH-hhcCCCCCCEEEEEec
Q 042616 108 GDYRGADFVLIDCNI-DIDGHKNVFRAAK-ESVMHGSGAGVIVGYN 151 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k-~~~~y~~~l~~l~-~~~~L~~~Ggviv~dN 151 (220)
.++||+|+.-.-. .-.+....++.+. +. |+| ||.+++..
T Consensus 101 --~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~--Lkp-gG~l~i~~ 141 (250)
T 2p7i_A 101 --PRRYDNIVLTHVLEHIDDPVALLKRINDDW--LAE-GGRLFLVC 141 (250)
T ss_dssp --SSCEEEEEEESCGGGCSSHHHHHHHHHHTT--EEE-EEEEEEEE
T ss_pred --CCcccEEEEhhHHHhhcCHHHHHHHHHHHh--cCC-CCEEEEEc
Confidence 4789999986543 1135678899999 88 886 77766643
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.1e-11 Score=101.37 Aligned_cols=109 Identities=9% Similarity=0.042 Sum_probs=80.7
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ 103 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~ 103 (220)
-+++..++|..++ ....+||||||| +|..|..|+.. +.+|++||++ +.+++.|+++ .+|++++++++
T Consensus 25 yp~~l~~~l~~~~--~~~~~vLDvGcG-tG~~~~~l~~~----~~~v~gvD~s-~~ml~~a~~~-----~~v~~~~~~~e 91 (257)
T 4hg2_A 25 YPRALFRWLGEVA--PARGDALDCGCG-SGQASLGLAEF----FERVHAVDPG-EAQIRQALRH-----PRVTYAVAPAE 91 (257)
T ss_dssp CCHHHHHHHHHHS--SCSSEEEEESCT-TTTTHHHHHTT----CSEEEEEESC-HHHHHTCCCC-----TTEEEEECCTT
T ss_pred cHHHHHHHHHHhc--CCCCCEEEEcCC-CCHHHHHHHHh----CCEEEEEeCc-HHhhhhhhhc-----CCceeehhhhh
Confidence 3444445544432 234789999997 99999988863 6899999999 9888776643 57999999998
Q ss_pred hhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 104 KLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
++ +--.++||+|+.-..-+--+....++.+.+. |+| ||++++
T Consensus 92 ~~-~~~~~sfD~v~~~~~~h~~~~~~~~~e~~rv--Lkp-gG~l~~ 133 (257)
T 4hg2_A 92 DT-GLPPASVDVAIAAQAMHWFDLDRFWAELRRV--ARP-GAVFAA 133 (257)
T ss_dssp CC-CCCSSCEEEEEECSCCTTCCHHHHHHHHHHH--EEE-EEEEEE
T ss_pred hh-cccCCcccEEEEeeehhHhhHHHHHHHHHHH--cCC-CCEEEE
Confidence 74 3325789999986554334568889999999 887 776544
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=103.64 Aligned_cols=108 Identities=15% Similarity=0.113 Sum_probs=84.8
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL 105 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~ 105 (220)
..+.+..+....+.++|||+||| +|..++. |. . +.+|+++|.+ +.+++.|++|++ ++.++++++++|+.++
T Consensus 183 ~~er~~i~~~~~~~~~VLDlg~G-~G~~~l~-a~---~-~~~V~~vD~s-~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~ 255 (336)
T 2yx1_A 183 GGERARIMKKVSLNDVVVDMFAG-VGPFSIA-CK---N-AKKIYAIDIN-PHAIELLKKNIKLNKLEHKIIPILSDVREV 255 (336)
T ss_dssp HHHHHHHHHHCCTTCEEEETTCT-TSHHHHH-TT---T-SSEEEEEESC-HHHHHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred HHHHHHHHHhcCCCCEEEEccCc-cCHHHHh-cc---C-CCEEEEEECC-HHHHHHHHHHHHHcCCCCcEEEEECChHHh
Confidence 34444333333577899999997 9999998 65 2 6899999999 999999999997 6667899999999987
Q ss_pred hhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 106 LMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 106 L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+ ..||+||+|.+. . ..++++.+.+. |+| ||++++...
T Consensus 256 ~----~~fD~Vi~dpP~--~-~~~~l~~~~~~--L~~-gG~l~~~~~ 292 (336)
T 2yx1_A 256 D----VKGNRVIMNLPK--F-AHKFIDKALDI--VEE-GGVIHYYTI 292 (336)
T ss_dssp C----CCEEEEEECCTT--T-GGGGHHHHHHH--EEE-EEEEEEEEE
T ss_pred c----CCCcEEEECCcH--h-HHHHHHHHHHH--cCC-CCEEEEEEe
Confidence 6 689999999876 2 34778888888 776 887766533
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=104.68 Aligned_cols=86 Identities=9% Similarity=0.064 Sum_probs=69.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcC--------
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDY-------- 110 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~-------- 110 (220)
+++|||+||| +|..|+.||.. .++|++||.+ +++++.|++|++ ++ ++++++++|+.+.++.+.
T Consensus 214 ~~~vLDl~cG-~G~~~l~la~~----~~~V~gvd~~-~~ai~~a~~n~~~ng~-~~v~~~~~d~~~~~~~~~~~~~~~~l 286 (369)
T 3bt7_A 214 KGDLLELYCG-NGNFSLALARN----FDRVLATEIA-KPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQAMNGVREFNRL 286 (369)
T ss_dssp CSEEEEESCT-TSHHHHHHGGG----SSEEEEECCC-HHHHHHHHHHHHHTTC-CSEEEECCCSHHHHHHHSSCCCCTTG
T ss_pred CCEEEEccCC-CCHHHHHHHhc----CCEEEEEECC-HHHHHHHHHHHHHcCC-CceEEEECCHHHHHHHHhhccccccc
Confidence 5789999997 99999988863 5799999999 999999999997 66 689999999999876432
Q ss_pred -------CCccEEEEcCCCCCccHHHHHHHH
Q 042616 111 -------RGADFVLIDCNIDIDGHKNVFRAA 134 (220)
Q Consensus 111 -------~~~D~VfiD~~k~~~~y~~~l~~l 134 (220)
..||+||+|.+. .+...+.++.+
T Consensus 287 ~~~~~~~~~fD~Vv~dPPr-~g~~~~~~~~l 316 (369)
T 3bt7_A 287 QGIDLKSYQCETIFVDPPR-SGLDSETEKMV 316 (369)
T ss_dssp GGSCGGGCCEEEEEECCCT-TCCCHHHHHHH
T ss_pred cccccccCCCCEEEECcCc-cccHHHHHHHH
Confidence 279999999987 12334444444
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.16 E-value=9.8e-11 Score=97.70 Aligned_cols=117 Identities=15% Similarity=0.060 Sum_probs=86.2
Q ss_pred hHHHHHHHHHhhC----CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhccc-CCcEEEEEcc
Q 042616 27 DVGEFISALAAGN----NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRY-ANCIEFVKGD 101 (220)
Q Consensus 27 ~~~~~L~~La~~~----~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~-~~~Ve~v~gd 101 (220)
....++..++... ++.+||||||| +|..+..|+... ..+|+++|.+ +.+++.|++++... ..+++++++|
T Consensus 62 ~~~~~~~~l~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~---~~~v~~vD~s-~~~~~~a~~~~~~~~~~~~~~~~~d 136 (241)
T 2ex4_A 62 SSRKFLQRFLREGPNKTGTSCALDCGAG-IGRITKRLLLPL---FREVDMVDIT-EDFLVQAKTYLGEEGKRVRNYFCCG 136 (241)
T ss_dssp HHHHHHHGGGC----CCCCSEEEEETCT-TTHHHHHTTTTT---CSEEEEEESC-HHHHHHHHHHTGGGGGGEEEEEECC
T ss_pred hHHHHHHHHHHhcccCCCCCEEEEECCC-CCHHHHHHHHhc---CCEEEEEeCC-HHHHHHHHHHhhhcCCceEEEEEcC
Confidence 3456666665543 57899999997 999999887643 4699999999 99999999998732 3579999999
Q ss_pred hhhhhhhcCCCccEEEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEE-ecC
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVG-YNA 152 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~-dNv 152 (220)
+.+.... .++||+|+.+..... ..+..+++.+.+. |+| ||.+++ ++.
T Consensus 137 ~~~~~~~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~--Lkp-gG~l~i~~~~ 187 (241)
T 2ex4_A 137 LQDFTPE-PDSYDVIWIQWVIGHLTDQHLAEFLRRCKGS--LRP-NGIIVIKDNM 187 (241)
T ss_dssp GGGCCCC-SSCEEEEEEESCGGGSCHHHHHHHHHHHHHH--EEE-EEEEEEEEEE
T ss_pred hhhcCCC-CCCEEEEEEcchhhhCCHHHHHHHHHHHHHh--cCC-CeEEEEEEcc
Confidence 8775322 457999998865311 2245789999998 887 666655 543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=105.37 Aligned_cols=110 Identities=15% Similarity=0.037 Sum_probs=84.3
Q ss_pred HHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCC--cEEEEEcchhhhh
Q 042616 31 FISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYAN--CIEFVKGDAQKLL 106 (220)
Q Consensus 31 ~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~--~Ve~v~gda~~~L 106 (220)
++.......+..+|||+||| +|..++.++...+ +.+|++||.+ +.+++.|+++++ ++.+ +++++.+|+.+.+
T Consensus 213 ~ll~~l~~~~~~~VLDlGcG-~G~~s~~la~~~p--~~~V~gvD~s-~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~ 288 (375)
T 4dcm_A 213 FFMQHLPENLEGEIVDLGCG-NGVIGLTLLDKNP--QAKVVFVDES-PMAVASSRLNVETNMPEALDRCEFMINNALSGV 288 (375)
T ss_dssp HHHHTCCCSCCSEEEEETCT-TCHHHHHHHHHCT--TCEEEEEESC-HHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC
T ss_pred HHHHhCcccCCCeEEEEeCc-chHHHHHHHHHCC--CCEEEEEECc-HHHHHHHHHHHHHcCCCcCceEEEEechhhccC
Confidence 34333344455899999997 9999999998754 6899999999 999999999997 5533 5899999998865
Q ss_pred hhcCCCccEEEEcCCCC------CccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 107 MGDYRGADFVLIDCNID------IDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~k~------~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+ .+.||+|+.|.+-. .....++++.+.+. |+| ||.+++
T Consensus 289 ~--~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~--Lkp-gG~l~i 332 (375)
T 4dcm_A 289 E--PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRC--LKI-NGELYI 332 (375)
T ss_dssp C--TTCEEEEEECCCC-------CCHHHHHHHHHHHH--EEE-EEEEEE
T ss_pred C--CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHh--CCC-CcEEEE
Confidence 4 36899999987641 12335678999998 887 666544
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-10 Score=93.21 Aligned_cols=113 Identities=13% Similarity=0.073 Sum_probs=88.9
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ 103 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~ 103 (220)
..+...+++..+.... ..+|||+||| +|..+..|+.. +.+|+++|++ +.+++.|+++. .+++++++|+.
T Consensus 26 ~~~~~~~~l~~~~~~~-~~~vLDiGcG-~G~~~~~l~~~----~~~v~gvD~s-~~~~~~a~~~~----~~~~~~~~d~~ 94 (203)
T 3h2b_A 26 AEDPDRVLIEPWATGV-DGVILDVGSG-TGRWTGHLASL----GHQIEGLEPA-TRLVELARQTH----PSVTFHHGTIT 94 (203)
T ss_dssp TTCTTHHHHHHHHHHC-CSCEEEETCT-TCHHHHHHHHT----TCCEEEECCC-HHHHHHHHHHC----TTSEEECCCGG
T ss_pred ccHHHHHHHHHHhccC-CCeEEEecCC-CCHHHHHHHhc----CCeEEEEeCC-HHHHHHHHHhC----CCCeEEeCccc
Confidence 3455667777776655 7889999997 99999999875 5699999999 99999999884 47999999998
Q ss_pred hhhhhcCCCccEEEEcCCCC---CccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 104 KLLMGDYRGADFVLIDCNID---IDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k~---~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+. +...++||+|+...... ..+....++.+.+. |+| ||.+++..
T Consensus 95 ~~-~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~--L~p-gG~l~i~~ 141 (203)
T 3h2b_A 95 DL-SDSPKRWAGLLAWYSLIHMGPGELPDALVALRMA--VED-GGGLLMSF 141 (203)
T ss_dssp GG-GGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHT--EEE-EEEEEEEE
T ss_pred cc-ccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHH--cCC-CcEEEEEE
Confidence 84 33357899999865321 14678899999998 886 78777654
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-10 Score=93.32 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~ 107 (220)
...++..+....+..+||||||| +|..+..|+.. +.+|+++|++ +.+++.|++ .+. .+++++++|+.+..+
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G-~G~~~~~l~~~----~~~v~~~D~s-~~~~~~a~~--~~~-~~~~~~~~d~~~~~~ 104 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASG-TGYWTRHLSGL----ADRVTALDGS-AEMIAEAGR--HGL-DNVEFRQQDLFDWTP 104 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCT-TSHHHHHHHHH----SSEEEEEESC-HHHHHHHGG--GCC-TTEEEEECCTTSCCC
T ss_pred HHHHHHHHhcCCCCCeEEEECCC-CCHHHHHHHhc----CCeEEEEeCC-HHHHHHHHh--cCC-CCeEEEecccccCCC
Confidence 44566666556677899999997 99999999986 6799999999 999999998 343 579999999988632
Q ss_pred hcCCCccEEEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 108 GDYRGADFVLIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.++||+|+....... .....+++.+.+. |+| ||.+++...
T Consensus 105 --~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~--L~p-gG~l~~~~~ 147 (218)
T 3ou2_A 105 --DRQWDAVFFAHWLAHVPDDRFEAFWESVRSA--VAP-GGVVEFVDV 147 (218)
T ss_dssp --SSCEEEEEEESCGGGSCHHHHHHHHHHHHHH--EEE-EEEEEEEEE
T ss_pred --CCceeEEEEechhhcCCHHHHHHHHHHHHHH--cCC-CeEEEEEeC
Confidence 478999998764411 1237789999998 887 777666544
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.1e-11 Score=99.48 Aligned_cols=107 Identities=7% Similarity=-0.067 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHh--hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh
Q 042616 26 PDVGEFISALAA--GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ 103 (220)
Q Consensus 26 p~~~~~L~~La~--~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~ 103 (220)
|....++..+.. ..+..+|||+||| +|+.+..|+.. +.+|+++|++ +.+++.|+++. .+++++++|+.
T Consensus 32 ~~~~~l~~~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~----~~~v~~vD~s-~~~~~~a~~~~----~~~~~~~~d~~ 101 (226)
T 3m33_A 32 PDPELTFDLWLSRLLTPQTRVLEAGCG-HGPDAARFGPQ----AARWAAYDFS-PELLKLARANA----PHADVYEWNGK 101 (226)
T ss_dssp SCTTHHHHHHHHHHCCTTCEEEEESCT-TSHHHHHHGGG----SSEEEEEESC-HHHHHHHHHHC----TTSEEEECCSC
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEeCCC-CCHHHHHHHHc----CCEEEEEECC-HHHHHHHHHhC----CCceEEEcchh
Confidence 444444444443 3567899999997 99999998875 6799999999 99999999983 57999999997
Q ss_pred hhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 104 KLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 104 ~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.+|.. .++||+|+...+. ...++.+.+. |+| ||.++..
T Consensus 102 ~~~~~~~~~~fD~v~~~~~~-----~~~l~~~~~~--Lkp-gG~l~~~ 141 (226)
T 3m33_A 102 GELPAGLGAPFGLIVSRRGP-----TSVILRLPEL--AAP-DAHFLYV 141 (226)
T ss_dssp SSCCTTCCCCEEEEEEESCC-----SGGGGGHHHH--EEE-EEEEEEE
T ss_pred hccCCcCCCCEEEEEeCCCH-----HHHHHHHHHH--cCC-CcEEEEe
Confidence 767643 4689999987444 3556777777 776 8888843
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.15 E-value=8e-11 Score=97.74 Aligned_cols=101 Identities=12% Similarity=0.051 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.++.+||||||| +|..+..|+. + +.+|+++|++ +.+++.|++++. +...+++++++|+.+..+ ..+||+|
T Consensus 65 ~~~~~vLDiGcG-~G~~~~~l~~---~-~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v 136 (235)
T 3lcc_A 65 LPLGRALVPGCG-GGHDVVAMAS---P-ERFVVGLDIS-ESALAKANETYGSSPKAEYFSFVKEDVFTWRP--TELFDLI 136 (235)
T ss_dssp SCCEEEEEETCT-TCHHHHHHCB---T-TEEEEEECSC-HHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC--SSCEEEE
T ss_pred CCCCCEEEeCCC-CCHHHHHHHh---C-CCeEEEEECC-HHHHHHHHHHhhccCCCcceEEEECchhcCCC--CCCeeEE
Confidence 345799999997 9999998864 2 7899999999 999999999987 455789999999988543 3689999
Q ss_pred EEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 117 LIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 117 fiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.-... +..+...+++.+.+. |+| ||.+++-
T Consensus 137 ~~~~~l~~~~~~~~~~~l~~~~~~--Lkp-gG~l~~~ 170 (235)
T 3lcc_A 137 FDYVFFCAIEPEMRPAWAKSMYEL--LKP-DGELITL 170 (235)
T ss_dssp EEESSTTTSCGGGHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred EEChhhhcCCHHHHHHHHHHHHHH--CCC-CcEEEEE
Confidence 965432 113678899999998 886 7777654
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=95.94 Aligned_cols=113 Identities=15% Similarity=0.050 Sum_probs=82.1
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcc-------------
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGR------------- 90 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g------------- 90 (220)
..|...+++..+ ...++.+|||+||| +|..+.+||.. +.+|++||.+ +++++.|++..+.
T Consensus 7 ~~~~l~~~~~~l-~~~~~~~vLD~GCG-~G~~~~~la~~----g~~V~gvD~S-~~~l~~a~~~~~~~~~~~~~~~~~~~ 79 (203)
T 1pjz_A 7 VNKDLQQYWSSL-NVVPGARVLVPLCG-KSQDMSWLSGQ----GYHVVGAELS-EAAVERYFTERGEQPHITSQGDFKVY 79 (203)
T ss_dssp STHHHHHHHHHH-CCCTTCEEEETTTC-CSHHHHHHHHH----CCEEEEEEEC-HHHHHHHHHHHCSCSEEEEETTEEEE
T ss_pred CCHHHHHHHHhc-ccCCCCEEEEeCCC-CcHhHHHHHHC----CCeEEEEeCC-HHHHHHHHHHccCCcccccccccccc
Confidence 345555665544 33467899999997 99999999984 6799999999 9999999987641
Q ss_pred cCCcEEEEEcchhhhhhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEE
Q 042616 91 YANCIEFVKGDAQKLLMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGV 146 (220)
Q Consensus 91 ~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggv 146 (220)
...+|+++++|+.+.-+...++||+|+.-..- ...+...+++.+.+. |+| ||.
T Consensus 80 ~~~~v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~--Lkp-gG~ 135 (203)
T 1pjz_A 80 AAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEAL--MPQ-ACS 135 (203)
T ss_dssp ECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHH--SCS-EEE
T ss_pred cCCccEEEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHH--cCC-CcE
Confidence 13579999999987532211589999853322 012335688999998 886 886
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3e-10 Score=94.98 Aligned_cols=122 Identities=11% Similarity=0.013 Sum_probs=93.0
Q ss_pred CCCCChhHHHHHHHHHhh---CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEE
Q 042616 21 KRGKEPDVGEFISALAAG---NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEF 97 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~---~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~ 97 (220)
...+.|...+.+..++.. .++.+||||||| +|..+..|+... +.+|++||++ +.+++.|++++... .++++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~---~~~v~~vD~s-~~~~~~a~~~~~~~-~~~~~ 106 (266)
T 3ujc_A 33 ENYISSGGLEATKKILSDIELNENSKVLDIGSG-LGGGCMYINEKY---GAHTHGIDIC-SNIVNMANERVSGN-NKIIF 106 (266)
T ss_dssp TTCCSTTHHHHHHHHTTTCCCCTTCEEEEETCT-TSHHHHHHHHHH---CCEEEEEESC-HHHHHHHHHTCCSC-TTEEE
T ss_pred CCccccchHHHHHHHHHhcCCCCCCEEEEECCC-CCHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHHhhcC-CCeEE
Confidence 344555555555555554 456799999997 999999999865 5799999999 99999999998744 78999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+++|+.+. +...++||+|+....... .+...+++.+.+. |+| ||.+++.+.
T Consensus 107 ~~~d~~~~-~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~--L~p-gG~l~~~~~ 160 (266)
T 3ujc_A 107 EANDILTK-EFPENNFDLIYSRDAILALSLENKNKLFQKCYKW--LKP-TGTLLITDY 160 (266)
T ss_dssp EECCTTTC-CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHH--EEE-EEEEEEEEE
T ss_pred EECccccC-CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHH--cCC-CCEEEEEEe
Confidence 99999874 332578999998754311 4567889999998 887 777776544
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-10 Score=97.30 Aligned_cols=103 Identities=7% Similarity=-0.095 Sum_probs=79.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--------ccCCcEEEEEcchhhhhhhc-
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--------RYANCIEFVKGDAQKLLMGD- 109 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--------g~~~~Ve~v~gda~~~L~~~- 109 (220)
.+..+||||||| +|..++.||...+ +..|++||++ +.+++.|+++++ ++ .+|+++++|+.+.++..
T Consensus 45 ~~~~~vLDiGcG-~G~~~~~la~~~p--~~~v~GiDis-~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~ 119 (235)
T 3ckk_A 45 QAQVEFADIGCG-YGGLLVELSPLFP--DTLILGLEIR-VKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFF 119 (235)
T ss_dssp -CCEEEEEETCT-TCHHHHHHGGGST--TSEEEEEESC-HHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHC
T ss_pred CCCCeEEEEccC-CcHHHHHHHHHCC--CCeEEEEECC-HHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhC
Confidence 456789999997 9999999998654 5799999999 999999998764 23 57999999998866532
Q ss_pred -CCCccEEEEcCCC---------CCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 110 -YRGADFVLIDCNI---------DIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 110 -~~~~D~VfiD~~k---------~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.+.||.|++.... +.-.+..+++.+.+. |+| ||.+++
T Consensus 120 ~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~--Lkp-GG~l~~ 166 (235)
T 3ckk_A 120 YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYV--LRV-GGLVYT 166 (235)
T ss_dssp CTTCEEEEEEESCC-----------CCCHHHHHHHHHH--EEE-EEEEEE
T ss_pred CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHH--CCC-CCEEEE
Confidence 4689999986432 001235789999998 887 777665
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.13 E-value=6.3e-10 Score=90.21 Aligned_cols=113 Identities=11% Similarity=0.063 Sum_probs=84.9
Q ss_pred CCCChhHHHHHHHHHhh---CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEE
Q 042616 22 RGKEPDVGEFISALAAG---NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFV 98 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~---~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v 98 (220)
....+..++.+..++.. .++++|||+||| +|..++.|+.. + ..+|++||.+ +.+++.|++++. +++++
T Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG-~G~~~~~l~~~-~--~~~v~~vD~~-~~~~~~a~~~~~----~~~~~ 100 (200)
T 1ne2_A 30 YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTG-NGILACGSYLL-G--AESVTAFDID-PDAIETAKRNCG----GVNFM 100 (200)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCT-TCHHHHHHHHT-T--BSEEEEEESC-HHHHHHHHHHCT----TSEEE
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCEEEEEeCC-ccHHHHHHHHc-C--CCEEEEEECC-HHHHHHHHHhcC----CCEEE
Confidence 34566666666665553 367899999997 99999998875 1 4589999999 999999999975 79999
Q ss_pred EcchhhhhhhcCCCccEEEEcCCCC---CccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 99 KGDAQKLLMGDYRGADFVLIDCNID---IDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 99 ~gda~~~L~~~~~~~D~VfiD~~k~---~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
++|+.+ ++ ++||+|+.|.+-. ......+++.+.+. + |+++++.|.
T Consensus 101 ~~d~~~-~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~--~---g~~~~~~~~ 148 (200)
T 1ne2_A 101 VADVSE-IS---GKYDTWIMNPPFGSVVKHSDRAFIDKAFET--S---MWIYSIGNA 148 (200)
T ss_dssp ECCGGG-CC---CCEEEEEECCCC-------CHHHHHHHHHH--E---EEEEEEEEG
T ss_pred ECcHHH-CC---CCeeEEEECCCchhccCchhHHHHHHHHHh--c---CcEEEEEcC
Confidence 999988 33 6899999998731 02335678888887 3 667666643
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-10 Score=103.06 Aligned_cols=119 Identities=14% Similarity=0.160 Sum_probs=92.2
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
.+.+..++.|..++ ..+...|||+||| +|..++.+|...+ .++|+++|.+ +.+++.|++|++ ++.++|+++++
T Consensus 201 ~l~~~la~~l~~~~-~~~~~~vLD~gCG-sG~~~i~~a~~~~--~~~v~g~Dis-~~~l~~A~~n~~~~gl~~~i~~~~~ 275 (373)
T 3tm4_A 201 HLKASIANAMIELA-ELDGGSVLDPMCG-SGTILIELALRRY--SGEIIGIEKY-RKHLIGAEMNALAAGVLDKIKFIQG 275 (373)
T ss_dssp CCCHHHHHHHHHHH-TCCSCCEEETTCT-TCHHHHHHHHTTC--CSCEEEEESC-HHHHHHHHHHHHHTTCGGGCEEEEC
T ss_pred CccHHHHHHHHHhh-cCCCCEEEEccCc-CcHHHHHHHHhCC--CCeEEEEeCC-HHHHHHHHHHHHHcCCCCceEEEEC
Confidence 45677888888887 6677899999997 9999999887543 3699999999 999999999997 77678999999
Q ss_pred chhhhhhhcCCCccEEEEcCCCCC---------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDI---------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~---------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+.+.. ...++||+|+.|.+-.. ..|..+++.+.+. | +.+++++..
T Consensus 276 D~~~~~-~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~--l-~g~~~~i~~ 330 (373)
T 3tm4_A 276 DATQLS-QYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKV--L-EKRGVFITT 330 (373)
T ss_dssp CGGGGG-GTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHH--E-EEEEEEEES
T ss_pred ChhhCC-cccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHH--c-CCeEEEEEC
Confidence 999854 32478999999976310 1357788888887 6 334444443
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-10 Score=95.52 Aligned_cols=114 Identities=14% Similarity=0.028 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHhhC--CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh
Q 042616 26 PDVGEFISALAAGN--NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ 103 (220)
Q Consensus 26 p~~~~~L~~La~~~--~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~ 103 (220)
....+++..++... ++.+|||+||| +|..+..|+.. +.+++++|++ +.+++.|++++.....+++++++|+.
T Consensus 21 ~~~~~~~~~~l~~~~~~~~~vLdiG~G-~G~~~~~l~~~----~~~~~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~d~~ 94 (246)
T 1y8c_A 21 KKWSDFIIEKCVENNLVFDDYLDLACG-TGNLTENLCPK----FKNTWAVDLS-QEMLSEAENKFRSQGLKPRLACQDIS 94 (246)
T ss_dssp HHHHHHHHHHHHTTTCCTTEEEEETCT-TSTTHHHHGGG----SSEEEEECSC-HHHHHHHHHHHHHTTCCCEEECCCGG
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEeCCC-CCHHHHHHHHC----CCcEEEEECC-HHHHHHHHHHHhhcCCCeEEEecccc
Confidence 44566777776665 77899999997 99999988874 5699999999 99999999998732237999999998
Q ss_pred hhhhhcCCCccEEEEcC-CC-CC---ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 104 KLLMGDYRGADFVLIDC-NI-DI---DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~-~k-~~---~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.. . .++||+|+... .- .- .+....++.+.+. |+| ||+++++
T Consensus 95 ~~~-~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~--L~p-gG~l~~~ 141 (246)
T 1y8c_A 95 NLN-I-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNH--LKE-GGVFIFD 141 (246)
T ss_dssp GCC-C-SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTT--EEE-EEEEEEE
T ss_pred cCC-c-cCCceEEEEcCccccccCCHHHHHHHHHHHHHh--cCC-CcEEEEE
Confidence 743 2 37899999976 21 01 3457788888888 876 8988874
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=97.05 Aligned_cols=99 Identities=13% Similarity=-0.020 Sum_probs=78.2
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFV 116 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~V 116 (220)
..++++||||||| +|..+..|+.. +.+|++||++ +++++.|+++ ++++++|+.+.+..+ .++||+|
T Consensus 39 ~~~~~~vLDiGcG-~G~~~~~l~~~----~~~v~gvD~s-~~~~~~a~~~-------~~~~~~d~~~~~~~~~~~~fD~i 105 (240)
T 3dli_A 39 FKGCRRVLDIGCG-RGEFLELCKEE----GIESIGVDIN-EDMIKFCEGK-------FNVVKSDAIEYLKSLPDKYLDGV 105 (240)
T ss_dssp TTTCSCEEEETCT-TTHHHHHHHHH----TCCEEEECSC-HHHHHHHHTT-------SEEECSCHHHHHHTSCTTCBSEE
T ss_pred hcCCCeEEEEeCC-CCHHHHHHHhC----CCcEEEEECC-HHHHHHHHhh-------cceeeccHHHHhhhcCCCCeeEE
Confidence 3456899999997 99999988875 5689999999 9999988875 789999999876332 4789999
Q ss_pred EEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 117 LIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 117 fiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+...-. ...++..+++.+.+. |+| ||.+++...
T Consensus 106 ~~~~~l~~~~~~~~~~~l~~~~~~--Lkp-gG~l~~~~~ 141 (240)
T 3dli_A 106 MISHFVEHLDPERLFELLSLCYSK--MKY-SSYIVIESP 141 (240)
T ss_dssp EEESCGGGSCGGGHHHHHHHHHHH--BCT-TCCEEEEEE
T ss_pred EECCchhhCCcHHHHHHHHHHHHH--cCC-CcEEEEEeC
Confidence 986533 113668899999999 887 777766533
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=7.1e-10 Score=94.76 Aligned_cols=120 Identities=13% Similarity=0.074 Sum_probs=91.9
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--cc---CCcEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RY---ANCIE 96 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~---~~~Ve 96 (220)
........++|..++...++.+||||||| +|..+..|+.. +.+|+++|++ +.+++.|++++. +. ..+++
T Consensus 39 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG-~G~~~~~l~~~----~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~~~~~ 112 (293)
T 3thr_A 39 RSRTAEYKAWLLGLLRQHGCHRVLDVACG-TGVDSIMLVEE----GFSVTSVDAS-DKMLKYALKERWNRRKEPAFDKWV 112 (293)
T ss_dssp SCBCHHHHHHHHHHHHHTTCCEEEETTCT-TSHHHHHHHHT----TCEEEEEESC-HHHHHHHHHHHHHTTTSHHHHTCE
T ss_pred cchHHHHHHHHHHHhcccCCCEEEEecCC-CCHHHHHHHHC----CCeEEEEECC-HHHHHHHHHhhhhcccccccceee
Confidence 34445667888888888889999999997 99999999875 5699999999 999999998863 11 14689
Q ss_pred EEEcchhhhhhh--cCCCccEEEEcC--CCCCcc-------HHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 97 FVKGDAQKLLMG--DYRGADFVLIDC--NIDIDG-------HKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 97 ~v~gda~~~L~~--~~~~~D~VfiD~--~k~~~~-------y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+..+|+.+.... ..++||+|+.-+ -..-.+ ...+++.+.+. |+| ||++++.
T Consensus 113 ~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~l~~~ 174 (293)
T 3thr_A 113 IEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASM--VRP-GGLLVID 174 (293)
T ss_dssp EEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHT--EEE-EEEEEEE
T ss_pred EeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHH--cCC-CeEEEEE
Confidence 999999875411 147899999852 111123 67889999998 886 8888765
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-10 Score=92.07 Aligned_cols=113 Identities=10% Similarity=-0.003 Sum_probs=83.6
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~ 109 (220)
+++..++...++.+||||||| +|..+..|+.. +.+|+++|.+ +.+++.|++++.....+++++++|+.+. +..
T Consensus 19 ~~l~~~~~~~~~~~vLdiGcG-~G~~~~~l~~~----~~~v~~vD~s-~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~ 91 (202)
T 2kw5_A 19 DFLVSVANQIPQGKILCLAEG-EGRNACFLASL----GYEVTAVDQS-SVGLAKAKQLAQEKGVKITTVQSNLADF-DIV 91 (202)
T ss_dssp SSHHHHHHHSCSSEEEECCCS-CTHHHHHHHTT----TCEEEEECSS-HHHHHHHHHHHHHHTCCEEEECCBTTTB-SCC
T ss_pred HHHHHHHHhCCCCCEEEECCC-CCHhHHHHHhC----CCeEEEEECC-HHHHHHHHHHHHhcCCceEEEEcChhhc-CCC
Confidence 444445554455599999997 89999988864 5799999999 9999999999872223799999998874 322
Q ss_pred CCCccEEEEcCCCC-CccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 110 YRGADFVLIDCNID-IDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 110 ~~~~D~VfiD~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.+.||+|+.....- ..+...+++.+.+. |+| ||.+++...
T Consensus 92 ~~~fD~v~~~~~~~~~~~~~~~l~~~~~~--L~p-gG~l~~~~~ 132 (202)
T 2kw5_A 92 ADAWEGIVSIFCHLPSSLRQQLYPKVYQG--LKP-GGVFILEGF 132 (202)
T ss_dssp TTTCSEEEEECCCCCHHHHHHHHHHHHTT--CCS-SEEEEEEEE
T ss_pred cCCccEEEEEhhcCCHHHHHHHHHHHHHh--cCC-CcEEEEEEe
Confidence 46899999754331 13457788899988 876 887776643
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=99.88 Aligned_cols=107 Identities=17% Similarity=0.115 Sum_probs=81.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccC------------------------
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYA------------------------ 92 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~------------------------ 92 (220)
.++++||||||| +|..++.|+...+ +.+|++||++ +.+++.|++++. +..
T Consensus 45 ~~~~~VLDiGCG-~G~~~~~la~~~~--~~~v~gvDis-~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (292)
T 3g07_A 45 FRGRDVLDLGCN-VGHLTLSIACKWG--PSRMVGLDID-SRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTV 120 (292)
T ss_dssp TTTSEEEEESCT-TCHHHHHHHHHTC--CSEEEEEESC-HHHHHHHHHTC------------------------------
T ss_pred cCCCcEEEeCCC-CCHHHHHHHHHcC--CCEEEEECCC-HHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 367899999997 9999999998764 4799999999 999999999876 221
Q ss_pred ---------------------------------CcEEEEEcchhhh----hhhcCCCccEEEEcCCC-------CCccHH
Q 042616 93 ---------------------------------NCIEFVKGDAQKL----LMGDYRGADFVLIDCNI-------DIDGHK 128 (220)
Q Consensus 93 ---------------------------------~~Ve~v~gda~~~----L~~~~~~~D~VfiD~~k-------~~~~y~ 128 (220)
++|+|+++|..+. ++...++||+|+.-.-. ......
T Consensus 121 ~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~ 200 (292)
T 3g07_A 121 RKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLK 200 (292)
T ss_dssp ---------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHH
T ss_pred cccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHH
Confidence 5899999998632 22225789999976632 002456
Q ss_pred HHHHHHHhhcCCCCCCEEEEEecC
Q 042616 129 NVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 129 ~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.+++.+.+. |+| ||+++...-
T Consensus 201 ~~l~~~~~~--Lkp-GG~lil~~~ 221 (292)
T 3g07_A 201 RMFRRIYRH--LRP-GGILVLEPQ 221 (292)
T ss_dssp HHHHHHHHH--EEE-EEEEEEECC
T ss_pred HHHHHHHHH--hCC-CcEEEEecC
Confidence 789999998 886 888888643
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.12 E-value=3.4e-10 Score=95.28 Aligned_cols=102 Identities=10% Similarity=-0.009 Sum_probs=80.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----------ccCCcEEEEEcchhhhhhhc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----------RYANCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----------g~~~~Ve~v~gda~~~L~~~ 109 (220)
+..+||||||| +|..++.||...+ +.+|++||++ +.+++.|+++++ ++ .+++++++|+.+.++..
T Consensus 49 ~~~~vLDiGcG-~G~~~~~la~~~~--~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~ 123 (246)
T 2vdv_E 49 KKVTIADIGCG-FGGLMIDLSPAFP--EDLILGMEIR-VQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNF 123 (246)
T ss_dssp CCEEEEEETCT-TSHHHHHHHHHST--TSEEEEEESC-HHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGT
T ss_pred CCCEEEEEcCC-CCHHHHHHHHhCC--CCCEEEEEcC-HHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHh
Confidence 56789999997 9999999998764 5799999999 999999999875 23 57999999999877643
Q ss_pred --CCCccEEEEcCCCC---------CccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 110 --YRGADFVLIDCNID---------IDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 110 --~~~~D~VfiD~~k~---------~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.+.+|.|++..+.. ...+..+++.+.+. |+| ||++++
T Consensus 124 ~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~--Lkp-gG~l~~ 171 (246)
T 2vdv_E 124 FEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYV--LKE-GGVVYT 171 (246)
T ss_dssp SCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHH--EEE-EEEEEE
T ss_pred ccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHH--cCC-CCEEEE
Confidence 36799998764430 01236889999998 876 887766
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=9e-10 Score=92.81 Aligned_cols=113 Identities=11% Similarity=-0.020 Sum_probs=84.4
Q ss_pred HHHHHHHHhhC-CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh
Q 042616 29 GEFISALAAGN-NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 29 ~~~L~~La~~~-~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~ 107 (220)
..++..+.... ++.+||||||| +|..+..|+.. +.+|++||++ +.+++.|++++. +++++++|+.+..
T Consensus 38 ~~~~~~l~~~~~~~~~vLDiGcG-~G~~~~~l~~~----~~~v~gvD~s-~~~~~~a~~~~~----~~~~~~~d~~~~~- 106 (263)
T 3pfg_A 38 ADLAALVRRHSPKAASLLDVACG-TGMHLRHLADS----FGTVEGLELS-ADMLAIARRRNP----DAVLHHGDMRDFS- 106 (263)
T ss_dssp HHHHHHHHHHCTTCCEEEEETCT-TSHHHHHHTTT----SSEEEEEESC-HHHHHHHHHHCT----TSEEEECCTTTCC-
T ss_pred HHHHHHHHhhCCCCCcEEEeCCc-CCHHHHHHHHc----CCeEEEEECC-HHHHHHHHhhCC----CCEEEECChHHCC-
Confidence 33444444333 45899999997 99999988764 5799999999 999999999863 7899999998843
Q ss_pred hcCCCccEEEEcCC-CC----CccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 108 GDYRGADFVLIDCN-ID----IDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 108 ~~~~~~D~VfiD~~-k~----~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
. .++||+|+...+ .. ..+...+++.+.+. |+| ||+++++....+.
T Consensus 107 ~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~--L~p-gG~l~i~~~~~~~ 156 (263)
T 3pfg_A 107 L-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAH--VLP-DGVVVVEPWWFPE 156 (263)
T ss_dssp C-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHT--EEE-EEEEEECCCCCTT
T ss_pred c-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHh--cCC-CcEEEEEeccChh
Confidence 2 578999998762 10 02445778899988 876 9999987544433
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.7e-10 Score=102.93 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=84.4
Q ss_pred ChhHHHHHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcc
Q 042616 25 EPDVGEFISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGD 101 (220)
Q Consensus 25 ~p~~~~~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gd 101 (220)
.+...+.|...+. ..+.++|||+||| +|..++.||.. +.+|++||.+ +++++.|++|++ ++ + ++|+++|
T Consensus 274 n~~~~e~l~~~~~~~~~~~~VLDlgcG-~G~~sl~la~~----~~~V~gvD~s-~~ai~~A~~n~~~ngl-~-v~~~~~d 345 (425)
T 2jjq_A 274 NSYQAVNLVRKVSELVEGEKILDMYSG-VGTFGIYLAKR----GFNVKGFDSN-EFAIEMARRNVEINNV-D-AEFEVAS 345 (425)
T ss_dssp BHHHHHHHHHHHHHHCCSSEEEEETCT-TTHHHHHHHHT----TCEEEEEESC-HHHHHHHHHHHHHHTC-C-EEEEECC
T ss_pred CHHHHHHHHHHhhccCCCCEEEEeecc-chHHHHHHHHc----CCEEEEEECC-HHHHHHHHHHHHHcCC-c-EEEEECC
Confidence 4555555444433 5667899999997 99999999874 5799999999 999999999997 66 4 9999999
Q ss_pred hhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+.+.++. .||+|++|.+. .+....+++.+.. |+| ||++++
T Consensus 346 ~~~~~~~---~fD~Vv~dPPr-~g~~~~~~~~l~~---l~p-~givyv 385 (425)
T 2jjq_A 346 DREVSVK---GFDTVIVDPPR-AGLHPRLVKRLNR---EKP-GVIVYV 385 (425)
T ss_dssp TTTCCCT---TCSEEEECCCT-TCSCHHHHHHHHH---HCC-SEEEEE
T ss_pred hHHcCcc---CCCEEEEcCCc-cchHHHHHHHHHh---cCC-CcEEEE
Confidence 9997643 89999999987 2333457777765 456 666555
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.9e-09 Score=86.40 Aligned_cols=114 Identities=12% Similarity=0.105 Sum_probs=87.7
Q ss_pred CCCCChhHHHHHHHHHh---hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcE
Q 042616 21 KRGKEPDVGEFISALAA---GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCI 95 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~---~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~V 95 (220)
+....+..++.+..++. ..+.++|||+||| +|..++.++.. . .++|+++|.+ +.+++.|+++++ ++ ++
T Consensus 27 ~~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G-~G~~~~~l~~~-~--~~~v~~vD~~-~~~~~~a~~~~~~~~~--~~ 99 (207)
T 1wy7_A 27 QYRTPGNAASELLWLAYSLGDIEGKVVADLGAG-TGVLSYGALLL-G--AKEVICVEVD-KEAVDVLIENLGEFKG--KF 99 (207)
T ss_dssp CCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCT-TCHHHHHHHHT-T--CSEEEEEESC-HHHHHHHHHHTGGGTT--SE
T ss_pred eecCchHHHHHHHHHHHHcCCCCcCEEEEeeCC-CCHHHHHHHHc-C--CCEEEEEECC-HHHHHHHHHHHHHcCC--CE
Confidence 34566777777666655 3457899999997 99999998875 1 3589999999 999999999997 44 79
Q ss_pred EEEEcchhhhhhhcCCCccEEEEcCCCC---CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 96 EFVKGDAQKLLMGDYRGADFVLIDCNID---IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 96 e~v~gda~~~L~~~~~~~D~VfiD~~k~---~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++++|+.++ + .+||+|++|.+-. ......+++.+.+. + |++++..
T Consensus 100 ~~~~~d~~~~-~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~--l---~~~~~~~ 148 (207)
T 1wy7_A 100 KVFIGDVSEF-N---SRVDIVIMNPPFGSQRKHADRPFLLKAFEI--S---DVVYSIH 148 (207)
T ss_dssp EEEESCGGGC-C---CCCSEEEECCCCSSSSTTTTHHHHHHHHHH--C---SEEEEEE
T ss_pred EEEECchHHc-C---CCCCEEEEcCCCccccCCchHHHHHHHHHh--c---CcEEEEE
Confidence 9999999883 3 4899999998731 13446788888887 4 6666554
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-10 Score=101.27 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=82.9
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
...+.++|||+||| +|..++.++.+ + ..+|++||.+ + +++.|+++++ ++.++|+++++|+.+. +...++||
T Consensus 63 ~~~~~~~VLDvGcG-~G~~~~~la~~-g--~~~v~gvD~s-~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD 135 (349)
T 3q7e_A 63 HLFKDKVVLDVGSG-TGILCMFAAKA-G--ARKVIGIECS-S-ISDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVD 135 (349)
T ss_dssp HHHTTCEEEEESCT-TSHHHHHHHHT-T--CSEEEEEECS-T-HHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEE
T ss_pred ccCCCCEEEEEecc-chHHHHHHHHC-C--CCEEEEECcH-H-HHHHHHHHHHHcCCCCcEEEEECcHHHc-cCCCCceE
Confidence 45678999999997 99999999986 1 4699999999 7 9999999987 7777899999999886 22147899
Q ss_pred EEEEcCC----CCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 115 FVLIDCN----IDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 115 ~VfiD~~----k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+|+.+.- ........+++.+.+. |+| ||+++.+
T Consensus 136 ~Iis~~~~~~l~~~~~~~~~l~~~~r~--Lkp-gG~li~~ 172 (349)
T 3q7e_A 136 IIISEWMGYCLFYESMLNTVLHARDKW--LAP-DGLIFPD 172 (349)
T ss_dssp EEEECCCBBTBTBTCCHHHHHHHHHHH--EEE-EEEEESC
T ss_pred EEEEccccccccCchhHHHHHHHHHHh--CCC-CCEEccc
Confidence 9998652 1114667788888888 876 9988744
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.11 E-value=3.9e-10 Score=94.32 Aligned_cols=103 Identities=12% Similarity=0.125 Sum_probs=81.3
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
..++.+|||+||| +|..+..|+.. +.+|+++|++ +.+++.|++++.+...+++++++|+.+. +...++||+|+
T Consensus 37 ~~~~~~vLDiG~G-~G~~~~~l~~~----~~~v~~vD~s-~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~ 109 (263)
T 2yqz_A 37 KGEEPVFLELGVG-TGRIALPLIAR----GYRYIALDAD-AAMLEVFRQKIAGVDRKVQVVQADARAI-PLPDESVHGVI 109 (263)
T ss_dssp SSSCCEEEEETCT-TSTTHHHHHTT----TCEEEEEESC-HHHHHHHHHHTTTSCTTEEEEESCTTSC-CSCTTCEEEEE
T ss_pred CCCCCEEEEeCCc-CCHHHHHHHHC----CCEEEEEECC-HHHHHHHHHHhhccCCceEEEEcccccC-CCCCCCeeEEE
Confidence 3567899999997 99999988864 6799999999 9999999999853336799999999763 32246899999
Q ss_pred EcCCCC-CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 118 IDCNID-IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 118 iD~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
...... -.+....++.+.+. |+| ||.+++.
T Consensus 110 ~~~~l~~~~~~~~~l~~~~~~--L~p-gG~l~~~ 140 (263)
T 2yqz_A 110 VVHLWHLVPDWPKVLAEAIRV--LKP-GGALLEG 140 (263)
T ss_dssp EESCGGGCTTHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred ECCchhhcCCHHHHHHHHHHH--CCC-CcEEEEE
Confidence 875431 13567889999998 886 7877664
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=3e-10 Score=102.84 Aligned_cols=120 Identities=17% Similarity=0.163 Sum_probs=91.2
Q ss_pred CChhHHHHHHHHHhhC-----CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEE
Q 042616 24 KEPDVGEFISALAAGN-----NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFV 98 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~-----~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v 98 (220)
..+....++..+.... +..+|||+||| +|..++.|+.. +.+|++||.+ +.+++.|+++++...-.++++
T Consensus 212 ~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG-~G~~~~~la~~----g~~V~gvDis-~~al~~A~~n~~~~~~~v~~~ 285 (381)
T 3dmg_A 212 VDPASLLLLEALQERLGPEGVRGRQVLDLGAG-YGALTLPLARM----GAEVVGVEDD-LASVLSLQKGLEANALKAQAL 285 (381)
T ss_dssp CCHHHHHHHHHHHHHHCTTTTTTCEEEEETCT-TSTTHHHHHHT----TCEEEEEESB-HHHHHHHHHHHHHTTCCCEEE
T ss_pred CCHHHHHHHHHHHHhhcccCCCCCEEEEEeee-CCHHHHHHHHc----CCEEEEEECC-HHHHHHHHHHHHHcCCCeEEE
Confidence 4566666777776542 56899999997 99999999874 5799999999 999999999997222249999
Q ss_pred EcchhhhhhhcCCCccEEEEcCCCCC------ccHHHHHHHHHhhcCCCCCCEEEEE-ecCC
Q 042616 99 KGDAQKLLMGDYRGADFVLIDCNIDI------DGHKNVFRAAKESVMHGSGAGVIVG-YNAL 153 (220)
Q Consensus 99 ~gda~~~L~~~~~~~D~VfiD~~k~~------~~y~~~l~~l~~~~~L~~~Ggviv~-dNv~ 153 (220)
++|+.+..+. .++||+|+.+.+-.. .....+++.+.+. |+| ||.+++ .|-.
T Consensus 286 ~~D~~~~~~~-~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~--Lkp-GG~l~iv~n~~ 343 (381)
T 3dmg_A 286 HSDVDEALTE-EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAAR--LRP-GGVFFLVSNPF 343 (381)
T ss_dssp ECSTTTTSCT-TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHH--EEE-EEEEEEEECTT
T ss_pred Ecchhhcccc-CCCeEEEEECCchhhcccccHHHHHHHHHHHHHh--cCc-CcEEEEEEcCC
Confidence 9999887643 468999999865421 3456788999998 887 665544 4443
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.8e-10 Score=90.37 Aligned_cols=108 Identities=13% Similarity=0.052 Sum_probs=83.4
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh--
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM-- 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~-- 107 (220)
.++..+ ...++.+||||||| +|..+..|+.. +.+|+++|++ +.+++.|+++ .+++++++|+.+...
T Consensus 43 ~~~~~~-~~~~~~~vLdiG~G-~G~~~~~l~~~----~~~v~~vD~s-~~~~~~a~~~-----~~~~~~~~~~~~~~~~~ 110 (227)
T 3e8s_A 43 AILLAI-LGRQPERVLDLGCG-EGWLLRALADR----GIEAVGVDGD-RTLVDAARAA-----GAGEVHLASYAQLAEAK 110 (227)
T ss_dssp HHHHHH-HHTCCSEEEEETCT-TCHHHHHHHTT----TCEEEEEESC-HHHHHHHHHT-----CSSCEEECCHHHHHTTC
T ss_pred HHHHHh-hcCCCCEEEEeCCC-CCHHHHHHHHC----CCEEEEEcCC-HHHHHHHHHh-----cccccchhhHHhhcccc
Confidence 344444 55667999999997 99999988874 6799999999 9999999987 467889999988621
Q ss_pred hc-CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 108 GD-YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 108 ~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.. ..+||+|+........+...+++.+.+. |+| ||.+++...
T Consensus 111 ~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~--L~p-gG~l~~~~~ 153 (227)
T 3e8s_A 111 VPVGKDYDLICANFALLHQDIIELLSAMRTL--LVP-GGALVIQTL 153 (227)
T ss_dssp SCCCCCEEEEEEESCCCSSCCHHHHHHHHHT--EEE-EEEEEEEEC
T ss_pred cccCCCccEEEECchhhhhhHHHHHHHHHHH--hCC-CeEEEEEec
Confidence 11 2459999987654235678899999998 876 888777544
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.9e-10 Score=100.53 Aligned_cols=97 Identities=13% Similarity=0.061 Sum_probs=78.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhh-cCCCccEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMG-DYRGADFV 116 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~-~~~~~D~V 116 (220)
++++|||+| | +|..++.++...+ .++|+++|.+ +.+++.|+++++ ++. +|+++++|+.+.+|. ..++||+|
T Consensus 172 ~~~~VLDlG-G-~G~~~~~la~~~~--~~~v~~vDi~-~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~V 245 (373)
T 2qm3_A 172 ENKDIFVLG-D-DDLTSIALMLSGL--PKRIAVLDID-ERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTF 245 (373)
T ss_dssp TTCEEEEES-C-TTCHHHHHHHHTC--CSEEEEECSC-HHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEE
T ss_pred CCCEEEEEC-C-CCHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEE
Confidence 578999999 8 9999999987532 4799999999 999999999997 664 899999999886653 34689999
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCE
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAG 145 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Gg 145 (220)
|+|.+........+++.+.+. |+| ||
T Consensus 246 i~~~p~~~~~~~~~l~~~~~~--Lkp-gG 271 (373)
T 2qm3_A 246 ITDPPETLEAIRAFVGRGIAT--LKG-PR 271 (373)
T ss_dssp EECCCSSHHHHHHHHHHHHHT--BCS-TT
T ss_pred EECCCCchHHHHHHHHHHHHH--ccc-CC
Confidence 999865112246778888888 876 77
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.8e-10 Score=91.86 Aligned_cols=101 Identities=14% Similarity=0.031 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.+..+||||||| +|..+..|+.. +.+|++||++ +.+++.|+++... .+++++++|+.+. +...++||+|+.
T Consensus 52 ~~~~~vLDiG~G-~G~~~~~l~~~----~~~v~~vD~s-~~~~~~a~~~~~~--~~~~~~~~d~~~~-~~~~~~fD~v~~ 122 (242)
T 3l8d_A 52 KKEAEVLDVGCG-DGYGTYKLSRT----GYKAVGVDIS-EVMIQKGKERGEG--PDLSFIKGDLSSL-PFENEQFEAIMA 122 (242)
T ss_dssp CTTCEEEEETCT-TSHHHHHHHHT----TCEEEEEESC-HHHHHHHHTTTCB--TTEEEEECBTTBC-SSCTTCEEEEEE
T ss_pred CCCCeEEEEcCC-CCHHHHHHHHc----CCeEEEEECC-HHHHHHHHhhccc--CCceEEEcchhcC-CCCCCCccEEEE
Confidence 357899999997 99999999875 6799999999 9999999988633 5799999999874 322578999997
Q ss_pred cCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 119 DCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 119 D~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
.... .-.+....++.+.+. |+| ||++++..
T Consensus 123 ~~~l~~~~~~~~~l~~~~~~--L~p-gG~l~i~~ 153 (242)
T 3l8d_A 123 INSLEWTEEPLRALNEIKRV--LKS-DGYACIAI 153 (242)
T ss_dssp ESCTTSSSCHHHHHHHHHHH--EEE-EEEEEEEE
T ss_pred cChHhhccCHHHHHHHHHHH--hCC-CeEEEEEE
Confidence 6644 124667889999999 886 77766654
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=6.2e-10 Score=101.97 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=80.4
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc---CCC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD---YRG 112 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~---~~~ 112 (220)
..+..+|||+||| +|..++.||.. +++|++||.+ +++++.|++|++ ++ ++++|+++|+.+.++.+ .++
T Consensus 284 ~~~~~~VLDlgcG-~G~~~~~la~~----~~~V~gvD~s-~~al~~A~~n~~~~~~-~~v~f~~~d~~~~l~~~~~~~~~ 356 (433)
T 1uwv_A 284 VQPEDRVLDLFCG-MGNFTLPLATQ----AASVVGVEGV-PALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQPWAKNG 356 (433)
T ss_dssp CCTTCEEEEESCT-TTTTHHHHHTT----SSEEEEEESC-HHHHHHHHHHHHHTTC-CSEEEEECCTTSCCSSSGGGTTC
T ss_pred CCCCCEEEECCCC-CCHHHHHHHhh----CCEEEEEeCC-HHHHHHHHHHHHHcCC-CceEEEECCHHHHhhhhhhhcCC
Confidence 3456899999997 99999999874 6899999999 999999999997 55 48999999999866432 357
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
||+|++|.+. ....+.++.+.+. .| ++++.+
T Consensus 357 fD~Vv~dPPr--~g~~~~~~~l~~~---~p-~~ivyv 387 (433)
T 1uwv_A 357 FDKVLLDPAR--AGAAGVMQQIIKL---EP-IRIVYV 387 (433)
T ss_dssp CSEEEECCCT--TCCHHHHHHHHHH---CC-SEEEEE
T ss_pred CCEEEECCCC--ccHHHHHHHHHhc---CC-CeEEEE
Confidence 9999999998 5556788888775 35 666543
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-10 Score=91.56 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=88.5
Q ss_pred ChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh
Q 042616 25 EPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK 104 (220)
Q Consensus 25 ~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~ 104 (220)
.+...+++..+....++.+|||+||| +|..++.++.. . +.+|+++|.+ +.+++.|++++.....+++++++|+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vLDiGcG-~G~~~~~~~~~--~-~~~v~~vD~s-~~~~~~a~~~~~~~~~~~~~~~~d~~~ 82 (209)
T 2p8j_A 8 QPQLYRFLKYCNESNLDKTVLDCGAG-GDLPPLSIFVE--D-GYKTYGIEIS-DLQLKKAENFSRENNFKLNISKGDIRK 82 (209)
T ss_dssp CTHHHHHHHHHHHSSSCSEEEEESCC-SSSCTHHHHHH--T-TCEEEEEECC-HHHHHHHHHHHHHHTCCCCEEECCTTS
T ss_pred hhhHHHHHHHHhccCCCCEEEEECCC-CCHHHHHHHHh--C-CCEEEEEECC-HHHHHHHHHHHHhcCCceEEEECchhh
Confidence 44566778777777788999999997 89875544432 2 6799999999 999999999987322579999999987
Q ss_pred hhhhcCCCccEEEEcCCCC---CccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 105 LLMGDYRGADFVLIDCNID---IDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~~k~---~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
. +...++||+|+....-. ..+....++.+.+. |+| ||.+++...
T Consensus 83 ~-~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~--Lkp-gG~l~~~~~ 129 (209)
T 2p8j_A 83 L-PFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRV--LKP-GGLACINFL 129 (209)
T ss_dssp C-CSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHH--EEE-EEEEEEEEE
T ss_pred C-CCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHH--cCC-CcEEEEEEe
Confidence 3 32246899999764321 13557788999998 886 888777643
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-10 Score=92.88 Aligned_cols=111 Identities=13% Similarity=0.046 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh
Q 042616 26 PDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL 105 (220)
Q Consensus 26 p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~ 105 (220)
....+++..+. ..++.+|||+||| +|..+..|+.. +.+++++|++ +.+++.|++++. .+++++++|+.+.
T Consensus 32 ~~~~~~l~~~~-~~~~~~vLDiGcG-~G~~~~~l~~~----~~~v~~vD~s-~~~~~~a~~~~~---~~~~~~~~d~~~~ 101 (220)
T 3hnr_A 32 AHYEDILEDVV-NKSFGNVLEFGVG-TGNLTNKLLLA----GRTVYGIEPS-REMRMIAKEKLP---KEFSITEGDFLSF 101 (220)
T ss_dssp TTHHHHHHHHH-HTCCSEEEEECCT-TSHHHHHHHHT----TCEEEEECSC-HHHHHHHHHHSC---TTCCEESCCSSSC
T ss_pred HHHHHHHHHhh-ccCCCeEEEeCCC-CCHHHHHHHhC----CCeEEEEeCC-HHHHHHHHHhCC---CceEEEeCChhhc
Confidence 34456666664 4477899999997 99999999874 6799999999 999999999875 5799999999885
Q ss_pred hhhcCCCccEEEEcCCCCC-ccHH--HHHHHHHhhcCCCCCCEEEEEec
Q 042616 106 LMGDYRGADFVLIDCNIDI-DGHK--NVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 106 L~~~~~~~D~VfiD~~k~~-~~y~--~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
. . .++||+|+....... .+.. ..++.+.+. |+| ||.+++.+
T Consensus 102 ~-~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~--Lkp-gG~l~i~~ 145 (220)
T 3hnr_A 102 E-V-PTSIDTIVSTYAFHHLTDDEKNVAIAKYSQL--LNK-GGKIVFAD 145 (220)
T ss_dssp C-C-CSCCSEEEEESCGGGSCHHHHHHHHHHHHHH--SCT-TCEEEEEE
T ss_pred C-C-CCCeEEEEECcchhcCChHHHHHHHHHHHHh--cCC-CCEEEEEe
Confidence 3 3 278999998865411 1222 388999998 887 66655543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.09 E-value=8.1e-10 Score=90.40 Aligned_cols=102 Identities=18% Similarity=0.173 Sum_probs=79.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+..+|||+||| +|..+..|+.. +.+++++|.+ +.+++.|++++.....+++++++|+.+. +...++||+|+..
T Consensus 38 ~~~~vLDlG~G-~G~~~~~l~~~----~~~v~~vD~s-~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~ 110 (227)
T 1ve3_A 38 KRGKVLDLACG-VGGFSFLLEDY----GFEVVGVDIS-EDMIRKAREYAKSRESNVEFIVGDARKL-SFEDKTFDYVIFI 110 (227)
T ss_dssp SCCEEEEETCT-TSHHHHHHHHT----TCEEEEEESC-HHHHHHHHHHHHHTTCCCEEEECCTTSC-CSCTTCEEEEEEE
T ss_pred CCCeEEEEecc-CCHHHHHHHHc----CCEEEEEECC-HHHHHHHHHHHHhcCCCceEEECchhcC-CCCCCcEEEEEEc
Confidence 46899999997 99999988875 3499999999 9999999999873336799999998873 2213689999987
Q ss_pred CC--C-CCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 120 CN--I-DIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 120 ~~--k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
.. . ...+....++.+.+. |+| ||.+++..
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~--L~~-gG~l~~~~ 142 (227)
T 1ve3_A 111 DSIVHFEPLELNQVFKEVRRV--LKP-SGKFIMYF 142 (227)
T ss_dssp SCGGGCCHHHHHHHHHHHHHH--EEE-EEEEEEEE
T ss_pred CchHhCCHHHHHHHHHHHHHH--cCC-CcEEEEEe
Confidence 65 3 113456788999998 876 77776653
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-09 Score=99.59 Aligned_cols=157 Identities=13% Similarity=0.062 Sum_probs=104.9
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHh-------c--cc-CCcEEEEEcchhh
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSL-------G--RY-ANCIEFVKGDAQK 104 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l-------~--g~-~~~Ve~v~gda~~ 104 (220)
.+...+..+||||||| +|..++.+|...+ ..+|++||.+ +.+++.|+++. + ++ .++|+|++||+.+
T Consensus 168 ~l~l~~gd~VLDLGCG-tG~l~l~lA~~~g--~~kVvGIDiS-~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~ 243 (438)
T 3uwp_A 168 EIKMTDDDLFVDLGSG-VGQVVLQVAAATN--CKHHYGVEKA-DIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS 243 (438)
T ss_dssp HHCCCTTCEEEEESCT-TSHHHHHHHHHCC--CSEEEEEECC-HHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTS
T ss_pred hcCCCCCCEEEEeCCC-CCHHHHHHHHHCC--CCEEEEEeCC-HHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccC
Confidence 3356677899999997 9999999887542 4579999999 99999999864 2 44 3689999999977
Q ss_pred hhhh-cCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcc-ceEEEeeecCCcEEEEEEeecCC
Q 042616 105 LLMG-DYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWR-GYKTHFLPIGEGLLVTRIGENSD 182 (220)
Q Consensus 105 ~L~~-~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~~~-~~~s~~lPig~Gl~v~~~~~~~~ 182 (220)
.--. ....+|+||+....-..+....|..+.+. |+| ||.||+-+.+.+..|+ ..+ .+-++++=+.+.....-.+
T Consensus 244 lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~Rv--LKP-GGrIVssE~f~p~d~~i~~r-nl~di~~il~v~el~~~~~ 319 (438)
T 3uwp_A 244 EEWRERIANTSVIFVNNFAFGPEVDHQLKERFAN--MKE-GGRIVSSKPFAPLNFRINSR-NLSDIGTIMRVVELSPLKG 319 (438)
T ss_dssp HHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTT--SCT-TCEEEESSCSSCTTCCCCSS-STTSGGGSEEEEECCCCTT
T ss_pred CccccccCCccEEEEcccccCchHHHHHHHHHHc--CCC-CcEEEEeecccCCCCCCCcc-cccChhhhheeeeccCCCC
Confidence 4211 12479999987643114556667777777 876 9999988888766554 111 2234555455544442222
Q ss_pred -CC-CCCcCcCceEecccC
Q 042616 183 -VG-GGRKRSRWVVTVDKC 199 (220)
Q Consensus 183 -~~-~~~~~~~w~~~~d~~ 199 (220)
++ ....-+-+|-.||.-
T Consensus 320 sVSWT~~~g~yyi~tvdr~ 338 (438)
T 3uwp_A 320 SVSWTGKPVSYYLHTIDRT 338 (438)
T ss_dssp CCCTTSSCCCCEEEEECTH
T ss_pred ceeeccCCccEEEEEechH
Confidence 22 234456667776653
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-10 Score=95.60 Aligned_cols=102 Identities=9% Similarity=0.042 Sum_probs=81.7
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
..++.+|||+||| +|..+..|+... ..+|+++|++ +.+++.|++++. ..+++++++|+.+. +...++||+|+
T Consensus 42 ~~~~~~vLD~GcG-~G~~~~~l~~~~---~~~v~~vD~s-~~~~~~a~~~~~--~~~~~~~~~d~~~~-~~~~~~fD~v~ 113 (253)
T 3g5l_A 42 DFNQKTVLDLGCG-FGWHCIYAAEHG---AKKVLGIDLS-ERMLTEAKRKTT--SPVVCYEQKAIEDI-AIEPDAYNVVL 113 (253)
T ss_dssp CCTTCEEEEETCT-TCHHHHHHHHTT---CSEEEEEESC-HHHHHHHHHHCC--CTTEEEEECCGGGC-CCCTTCEEEEE
T ss_pred ccCCCEEEEECCC-CCHHHHHHHHcC---CCEEEEEECC-HHHHHHHHHhhc--cCCeEEEEcchhhC-CCCCCCeEEEE
Confidence 3467899999997 999999998752 2399999999 999999999887 36799999999763 33247899999
Q ss_pred EcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 118 IDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 118 iD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..... ...+....++.+.+. |+| ||.+++.
T Consensus 114 ~~~~l~~~~~~~~~l~~~~~~--Lkp-gG~l~~~ 144 (253)
T 3g5l_A 114 SSLALHYIASFDDICKKVYIN--LKS-SGSFIFS 144 (253)
T ss_dssp EESCGGGCSCHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred EchhhhhhhhHHHHHHHHHHH--cCC-CcEEEEE
Confidence 87643 114678899999998 886 8887775
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.7e-10 Score=99.64 Aligned_cols=107 Identities=9% Similarity=0.069 Sum_probs=81.9
Q ss_pred HHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc
Q 042616 32 ISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 32 L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~ 109 (220)
|.......+.++||||||| +|..++.++++ . ..+|++||.+ + +++.|+++++ ++.++|+++++|+.+. +.-
T Consensus 56 i~~~~~~~~~~~VLDiGcG-tG~ls~~la~~-g--~~~v~gvD~s-~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~ 128 (340)
T 2fyt_A 56 IYQNPHIFKDKVVLDVGCG-TGILSMFAAKA-G--AKKVLGVDQS-E-ILYQAMDIIRLNKLEDTITLIKGKIEEV-HLP 128 (340)
T ss_dssp HHHCGGGTTTCEEEEETCT-TSHHHHHHHHT-T--CSEEEEEESS-T-HHHHHHHHHHHTTCTTTEEEEESCTTTS-CCS
T ss_pred HHhhhhhcCCCEEEEeecc-CcHHHHHHHHc-C--CCEEEEEChH-H-HHHHHHHHHHHcCCCCcEEEEEeeHHHh-cCC
Confidence 3333345678999999997 99999988875 1 4699999999 7 8999999987 6668899999999874 221
Q ss_pred CCCccEEEEcCC---C-CCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 110 YRGADFVLIDCN---I-DIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 110 ~~~~D~VfiD~~---k-~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
.++||+|+.+.- . .......+++.+.+. |+| ||+++
T Consensus 129 ~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~--Lkp-gG~li 168 (340)
T 2fyt_A 129 VEKVDVIISEWMGYFLLFESMLDSVLYAKNKY--LAK-GGSVY 168 (340)
T ss_dssp CSCEEEEEECCCBTTBTTTCHHHHHHHHHHHH--EEE-EEEEE
T ss_pred CCcEEEEEEcCchhhccCHHHHHHHHHHHHhh--cCC-CcEEE
Confidence 368999998761 1 113456678888888 876 88887
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.8e-10 Score=92.70 Aligned_cols=110 Identities=12% Similarity=0.020 Sum_probs=85.1
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~ 109 (220)
+.+..++...+..+||||||| +|..+..|+.. . ..+++++|++ +.+++.|++++.. .+++++++|+.+. +..
T Consensus 33 ~~l~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~-~--~~~v~~vD~s-~~~~~~a~~~~~~--~~~~~~~~d~~~~-~~~ 104 (243)
T 3bkw_A 33 PALRAMLPEVGGLRIVDLGCG-FGWFCRWAHEH-G--ASYVLGLDLS-EKMLARARAAGPD--TGITYERADLDKL-HLP 104 (243)
T ss_dssp HHHHHHSCCCTTCEEEEETCT-TCHHHHHHHHT-T--CSEEEEEESC-HHHHHHHHHTSCS--SSEEEEECCGGGC-CCC
T ss_pred HHHHHhccccCCCEEEEEcCc-CCHHHHHHHHC-C--CCeEEEEcCC-HHHHHHHHHhccc--CCceEEEcChhhc-cCC
Confidence 355555566678999999997 99999988875 1 2399999999 9999999998753 3699999999874 322
Q ss_pred CCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 110 YRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 110 ~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.++||+|+..... ...+....++.+.+. |+| ||.+++.
T Consensus 105 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~--L~p-gG~l~~~ 143 (243)
T 3bkw_A 105 QDSFDLAYSSLALHYVEDVARLFRTVHQA--LSP-GGHFVFS 143 (243)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred CCCceEEEEeccccccchHHHHHHHHHHh--cCc-CcEEEEE
Confidence 4689999987543 114568889999998 876 8877764
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.08 E-value=5.2e-10 Score=102.23 Aligned_cols=122 Identities=14% Similarity=0.098 Sum_probs=95.5
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
.+....++++..++...+..+|||+||| +|..|+.|+...+ +++|+++|.+ +.+++.++++++ ++ +++++++
T Consensus 229 ~~qd~~s~~~~~~l~~~~g~~VLDlgaG-~G~~t~~la~~~~--~~~v~a~D~~-~~~l~~~~~~~~~~g~--~~~~~~~ 302 (429)
T 1sqg_A 229 TVQDASAQGCMTWLAPQNGEHILDLCAA-PGGKTTHILEVAP--EAQVVAVDID-EQRLSRVYDNLKRLGM--KATVKQG 302 (429)
T ss_dssp EECCHHHHTHHHHHCCCTTCEEEEESCT-TCHHHHHHHHHCT--TCEEEEEESS-TTTHHHHHHHHHHTTC--CCEEEEC
T ss_pred EeeCHHHHHHHHHcCCCCcCeEEEECCC-chHHHHHHHHHcC--CCEEEEECCC-HHHHHHHHHHHHHcCC--CeEEEeC
Confidence 3556677888888888888999999996 9999999998765 4899999999 999999999997 54 4899999
Q ss_pred chhhhhhhc-CCCccEEEEcCCCCC-------cc----------------HHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 101 DAQKLLMGD-YRGADFVLIDCNIDI-------DG----------------HKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 101 da~~~L~~~-~~~~D~VfiD~~k~~-------~~----------------y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|+.+..+.. .+.||+|++|++-.. .+ +..+++.+.+. |+| ||.+|.-...
T Consensus 303 D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~--Lkp-GG~lvystcs 376 (429)
T 1sqg_A 303 DGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPH--LKT-GGTLVYATCS 376 (429)
T ss_dssp CTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGG--EEE-EEEEEEEESC
T ss_pred chhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHh--cCC-CCEEEEEECC
Confidence 998764322 257999999986411 00 14678888888 876 8888776544
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.6e-10 Score=92.27 Aligned_cols=108 Identities=14% Similarity=0.089 Sum_probs=81.1
Q ss_pred HHHHHHhh-CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc
Q 042616 31 FISALAAG-NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 31 ~L~~La~~-~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~ 109 (220)
++..+... .+..+|||+||| +|..+..|+.. .+++++|++ +.+++.|++++.....+++++++|+.+.. .
T Consensus 23 ~~~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~-----~~v~~vD~s-~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~- 93 (243)
T 3d2l_A 23 WVAWVLEQVEPGKRIADIGCG-TGTATLLLADH-----YEVTGVDLS-EEMLEIAQEKAMETNRHVDFWVQDMRELE-L- 93 (243)
T ss_dssp HHHHHHHHSCTTCEEEEESCT-TCHHHHHHTTT-----SEEEEEESC-HHHHHHHHHHHHHTTCCCEEEECCGGGCC-C-
T ss_pred HHHHHHHHcCCCCeEEEecCC-CCHHHHHHhhC-----CeEEEEECC-HHHHHHHHHhhhhcCCceEEEEcChhhcC-C-
Confidence 33333333 345899999997 89998887763 699999999 99999999998733357999999998743 2
Q ss_pred CCCccEEEEcCCC-----CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 110 YRGADFVLIDCNI-----DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 110 ~~~~D~VfiD~~k-----~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.++||+|++..+. +..+....++.+.+. |+| ||.++++
T Consensus 94 ~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~--L~p-gG~l~~~ 136 (243)
T 3d2l_A 94 PEPVDAITILCDSLNYLQTEADVKQTFDSAARL--LTD-GGKLLFD 136 (243)
T ss_dssp SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHh--cCC-CeEEEEE
Confidence 3789999986521 113456778888888 876 8888874
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.07 E-value=9.7e-10 Score=96.95 Aligned_cols=109 Identities=10% Similarity=0.074 Sum_probs=83.0
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~ 107 (220)
+.|.......+.++||||||| +|..++.++++ + ..+|++||.+ + +++.|+++++ ++.++|+++++|+.+.-
T Consensus 28 ~ai~~~~~~~~~~~VLDiGcG-tG~ls~~la~~-g--~~~v~~vD~s-~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 100 (328)
T 1g6q_1 28 NAIIQNKDLFKDKIVLDVGCG-TGILSMFAAKH-G--AKHVIGVDMS-S-IIEMAKELVELNGFSDKITLLRGKLEDVH- 100 (328)
T ss_dssp HHHHHHHHHHTTCEEEEETCT-TSHHHHHHHHT-C--CSEEEEEESS-T-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-
T ss_pred HHHHhhHhhcCCCEEEEecCc-cHHHHHHHHHC-C--CCEEEEEChH-H-HHHHHHHHHHHcCCCCCEEEEECchhhcc-
Confidence 334344456678999999997 99999988875 1 3699999999 6 8999999986 77788999999998752
Q ss_pred hcCCCccEEEEcCCC----CCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 108 GDYRGADFVLIDCNI----DIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k----~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
.-.++||+|+.+..- .......+++.+.+. |+| ||+++
T Consensus 101 ~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~--Lkp-gG~li 142 (328)
T 1g6q_1 101 LPFPKVDIIISEWMGYFLLYESMMDTVLYARDHY--LVE-GGLIF 142 (328)
T ss_dssp CSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHH--EEE-EEEEE
T ss_pred CCCCcccEEEEeCchhhcccHHHHHHHHHHHHhh--cCC-CeEEE
Confidence 113689999987421 113456788888888 876 88887
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.6e-10 Score=93.24 Aligned_cols=111 Identities=9% Similarity=-0.074 Sum_probs=79.3
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchh------HHHHHHHHhc--ccCCcEEEEEcc-hhh-hh
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIG------DIDASKKSLG--RYANCIEFVKGD-AQK-LL 106 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~------~~~~Ar~~l~--g~~~~Ve~v~gd-a~~-~L 106 (220)
...+..+||||||| +|+.+..|+....+ .++|++||++ +. +++.|++++. ++.++|+++++| ... .+
T Consensus 40 ~~~~~~~vLDiGcG-~G~~~~~l~~~~g~-~~~v~gvD~s-~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 116 (275)
T 3bkx_A 40 QVKPGEKILEIGCG-QGDLSAVLADQVGS-SGHVTGIDIA-SPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLG 116 (275)
T ss_dssp TCCTTCEEEEESCT-TSHHHHHHHHHHCT-TCEEEEECSS-CTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCG
T ss_pred CCCCCCEEEEeCCC-CCHHHHHHHHHhCC-CCEEEEEECC-ccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccC
Confidence 34667899999997 99999999987533 5899999999 86 8999999986 555789999998 321 12
Q ss_pred hhcCCCccEEEEcCCCC-CccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 107 MGDYRGADFVLIDCNID-IDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+...++||+|+....-. ..+...+++.+..+ + ++||.++..+..
T Consensus 117 ~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l--~-~~gG~l~~~~~~ 161 (275)
T 3bkx_A 117 PIADQHFDRVVLAHSLWYFASANALALLFKNM--A-AVCDHVDVAEWS 161 (275)
T ss_dssp GGTTCCCSEEEEESCGGGSSCHHHHHHHHHHH--T-TTCSEEEEEEEC
T ss_pred CCCCCCEEEEEEccchhhCCCHHHHHHHHHHH--h-CCCCEEEEEEec
Confidence 32247899999876431 12344556666665 4 447777665433
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-09 Score=90.73 Aligned_cols=93 Identities=14% Similarity=0.024 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHhhC-----CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 26 PDVGEFISALAAGN-----NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 26 p~~~~~L~~La~~~-----~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
|+...++..++... ++.+|||+||| +|..++.|+...+ +.+|+++|.+ +.+++.|+++++ ++.++++++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G-~G~~~~~la~~~~--~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~v~~~ 121 (254)
T 2h00_A 46 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTG-ASCIYPLLGATLN--GWYFLATEVD-DMCFNYAKKNVEQNNLSDLIKVV 121 (254)
T ss_dssp HHHHHHHHHHHCCCCGGGCCCCEEEEESCT-TTTHHHHHHHHHH--CCEEEEEESC-HHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHHHHhhccccCCCCCEEEEeCCC-hhHHHHHHHHhCC--CCeEEEEECC-HHHHHHHHHHHHHcCCCccEEEE
Confidence 55666777776543 46799999997 9999999987654 5899999999 999999999997 676679999
Q ss_pred Ecchhhh-hhhcC----CCccEEEEcCCC
Q 042616 99 KGDAQKL-LMGDY----RGADFVLIDCNI 122 (220)
Q Consensus 99 ~gda~~~-L~~~~----~~~D~VfiD~~k 122 (220)
++|+.+. +..+. ++||+|+.+.+-
T Consensus 122 ~~d~~~~~~~~~~~~~~~~fD~i~~npp~ 150 (254)
T 2h00_A 122 KVPQKTLLMDALKEESEIIYDFCMCNPPF 150 (254)
T ss_dssp ECCTTCSSTTTSTTCCSCCBSEEEECCCC
T ss_pred EcchhhhhhhhhhcccCCcccEEEECCCC
Confidence 9998762 32222 479999998654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.06 E-value=6.2e-10 Score=100.02 Aligned_cols=109 Identities=11% Similarity=0.145 Sum_probs=86.5
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-------c-cC-CcEEEEEcchhhhh--
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-------R-YA-NCIEFVKGDAQKLL-- 106 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-------g-~~-~~Ve~v~gda~~~L-- 106 (220)
..++.+||||||| +|..++.|+....+ +++|+++|++ +.+++.|+++++ | +. .+++++++|+.+..
T Consensus 81 ~~~~~~VLDlGcG-~G~~~~~la~~~~~-~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~ 157 (383)
T 4fsd_A 81 SLEGATVLDLGCG-TGRDVYLASKLVGE-HGKVIGVDML-DNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATA 157 (383)
T ss_dssp GGTTCEEEEESCT-TSHHHHHHHHHHTT-TCEEEEEECC-HHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGC
T ss_pred CCCCCEEEEecCc-cCHHHHHHHHHhCC-CCEEEEEECC-HHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhc
Confidence 4467899999997 99999999988755 6899999999 999999999885 1 22 68999999998752
Q ss_pred ---hhcCCCccEEEEcCCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 107 ---MGDYRGADFVLIDCNIDI-DGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 107 ---~~~~~~~D~VfiD~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+...++||+|+....... .+...+++.+.+. |+| ||.+++-+.
T Consensus 158 ~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~--Lkp-gG~l~i~~~ 204 (383)
T 4fsd_A 158 EPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRV--LRD-GGELYFSDV 204 (383)
T ss_dssp BSCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHH--EEE-EEEEEEEEE
T ss_pred ccCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHH--cCC-CCEEEEEEe
Confidence 222468999998875411 4568899999999 887 888777544
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.6e-10 Score=100.39 Aligned_cols=105 Identities=10% Similarity=0.102 Sum_probs=82.4
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
...+.++|||+||| +|..++.++.+. ..+|++||.+ .+++.|+++++ ++.++|+++++|+.++.. .++||
T Consensus 60 ~~~~~~~VLDlGcG-tG~ls~~la~~g---~~~V~gvD~s--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D 131 (376)
T 3r0q_C 60 HHFEGKTVLDVGTG-SGILAIWSAQAG---ARKVYAVEAT--KMADHARALVKANNLDHIVEVIEGSVEDISL--PEKVD 131 (376)
T ss_dssp TTTTTCEEEEESCT-TTHHHHHHHHTT---CSEEEEEESS--TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC--SSCEE
T ss_pred ccCCCCEEEEeccC-cCHHHHHHHhcC---CCEEEEEccH--HHHHHHHHHHHHcCCCCeEEEEECchhhcCc--CCcce
Confidence 44667999999997 999999998861 3599999999 67899999987 777889999999988542 37899
Q ss_pred EEEEcCCC----CCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 115 FVLIDCNI----DIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 115 ~VfiD~~k----~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+|+.+.-. .......+++.+.+. |+| ||+++....
T Consensus 132 ~Iv~~~~~~~l~~e~~~~~~l~~~~~~--Lkp-gG~li~~~~ 170 (376)
T 3r0q_C 132 VIISEWMGYFLLRESMFDSVISARDRW--LKP-TGVMYPSHA 170 (376)
T ss_dssp EEEECCCBTTBTTTCTHHHHHHHHHHH--EEE-EEEEESSEE
T ss_pred EEEEcChhhcccchHHHHHHHHHHHhh--CCC-CeEEEEecC
Confidence 99997621 013356688888888 876 999877544
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.2e-10 Score=97.02 Aligned_cols=103 Identities=15% Similarity=0.175 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhccc----CCcEEEEEcchhhhhhhcCCCccE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRY----ANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~----~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
++.+||||||| +|..+..|+.. +.+|++||++ +.+++.|++++... ..+|+++++|+.++ +. .++||+
T Consensus 82 ~~~~vLDlGcG-~G~~~~~l~~~----~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~-~~-~~~fD~ 153 (299)
T 3g2m_A 82 VSGPVLELAAG-MGRLTFPFLDL----GWEVTALELS-TSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF-AL-DKRFGT 153 (299)
T ss_dssp CCSCEEEETCT-TTTTHHHHHTT----TCCEEEEESC-HHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC-CC-SCCEEE
T ss_pred CCCcEEEEecc-CCHHHHHHHHc----CCeEEEEECC-HHHHHHHHHHHhhcccccccceEEEeCchhcC-Cc-CCCcCE
Confidence 34589999997 99999998874 6799999999 99999999998732 26899999999884 33 578999
Q ss_pred EEEcCC----CCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 116 VLIDCN----IDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 116 VfiD~~----k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|++... .+..+...+++.+.+. |+| ||.+++....
T Consensus 154 v~~~~~~~~~~~~~~~~~~l~~~~~~--L~p-gG~l~~~~~~ 192 (299)
T 3g2m_A 154 VVISSGSINELDEADRRGLYASVREH--LEP-GGKFLLSLAM 192 (299)
T ss_dssp EEECHHHHTTSCHHHHHHHHHHHHHH--EEE-EEEEEEEEEC
T ss_pred EEECCcccccCCHHHHHHHHHHHHHH--cCC-CcEEEEEeec
Confidence 986421 1112457889999998 886 8888876433
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-09 Score=85.93 Aligned_cols=108 Identities=19% Similarity=0.102 Sum_probs=82.8
Q ss_pred hHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhh
Q 042616 27 DVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLL 106 (220)
Q Consensus 27 ~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L 106 (220)
...+++..+ ..++.+|||+||| +|..+..|+.. +.+++++|++ +.+++.|++++ .+++++++|+.+.
T Consensus 35 ~~~~~l~~~--~~~~~~vLdiG~G-~G~~~~~l~~~----~~~v~~~D~~-~~~~~~a~~~~----~~~~~~~~d~~~~- 101 (195)
T 3cgg_A 35 GEARLIDAM--APRGAKILDAGCG-QGRIGGYLSKQ----GHDVLGTDLD-PILIDYAKQDF----PEARWVVGDLSVD- 101 (195)
T ss_dssp HHHHHHHHH--SCTTCEEEEETCT-TTHHHHHHHHT----TCEEEEEESC-HHHHHHHHHHC----TTSEEEECCTTTS-
T ss_pred hHHHHHHHh--ccCCCeEEEECCC-CCHHHHHHHHC----CCcEEEEcCC-HHHHHHHHHhC----CCCcEEEcccccC-
Confidence 345677666 4577899999997 99999998875 5799999999 99999999987 3589999998874
Q ss_pred hhcCCCccEEEEcCCC----CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 107 MGDYRGADFVLIDCNI----DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~k----~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+...++||+|+..++. ...+...+++.+.+. |+| ||.+++.
T Consensus 102 ~~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~--l~~-~G~l~~~ 146 (195)
T 3cgg_A 102 QISETDFDLIVSAGNVMGFLAEDGREPALANIHRA--LGA-DGRAVIG 146 (195)
T ss_dssp CCCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred CCCCCceeEEEECCcHHhhcChHHHHHHHHHHHHH--hCC-CCEEEEE
Confidence 2214689999997432 002346788889988 876 7777764
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-09 Score=94.34 Aligned_cols=134 Identities=13% Similarity=0.084 Sum_probs=95.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcC-----CCCcEEEEEe-----CCchhH----------------------HHH---
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAAR-----QTGGRVVCIL-----SGVIGD----------------------IDA--- 83 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~-----~~~grV~tIE-----~d~~~~----------------------~~~--- 83 (220)
.-+..|+|+|+. -|.|++.++.... .+..+|+++| +. +.. ++.
T Consensus 68 ~vpG~ivE~GV~-rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~-~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~ 145 (257)
T 3tos_A 68 DVPGVIMEFGVR-FGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPD-VNDVDRVGPTAYQGRFAVPGGYPAYLKEVLD 145 (257)
T ss_dssp TSCSEEEEECCT-TCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCS-CCGGGTTSTTCSTTTTCCCTTHHHHHHHHHH
T ss_pred CCCCeEEEEecc-cCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCC-CccccccccccccCcccccchhHHHHHHHHH
Confidence 458899999994 7888887765321 2368999999 43 310 111
Q ss_pred HHHHhc--cc-CCcEEEEEcchhhhhhhc-----CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC--
Q 042616 84 SKKSLG--RY-ANCIEFVKGDAQKLLMGD-----YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL-- 153 (220)
Q Consensus 84 Ar~~l~--g~-~~~Ve~v~gda~~~L~~~-----~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~-- 153 (220)
.+++++ +. .++|+++.|++.+.||.+ ..+|||||||+++ +..+.++++.+.++ |+| ||+||+||..
T Consensus 146 ~~~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~-Y~~t~~~le~~~p~--l~~-GGvIv~DD~~~~ 221 (257)
T 3tos_A 146 AHECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL-YEPTKAVLEAIRPY--LTK-GSIVAFDELDNP 221 (257)
T ss_dssp HHHTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC-HHHHHHHHHHHGGG--EEE-EEEEEESSTTCT
T ss_pred HHhhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc-cchHHHHHHHHHHH--hCC-CcEEEEcCCCCC
Confidence 122333 43 488999999999999874 2469999999997 45667789999998 865 9999999985
Q ss_pred -CCC---Ccc------ceEEEeeecCCcEEEEEEe
Q 042616 154 -PKG---SWR------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 154 -~~g---~~~------~~~s~~lPig~Gl~v~~~~ 178 (220)
++| .|. +..-..+|++.+....++.
T Consensus 222 ~w~G~~~A~~ef~~~~~~~i~~~p~~~~~~y~~~~ 256 (257)
T 3tos_A 222 KWPGENIAMRKVLGLDHAPLRLLPGRPAPAYLRWG 256 (257)
T ss_dssp TCTHHHHHHHHHTCTTSSCCEECTTCSCCEEEETT
T ss_pred CChHHHHHHHHHHhhCCCeEEEccCCCCCEEEEec
Confidence 344 233 4666678888887766653
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.7e-10 Score=99.57 Aligned_cols=99 Identities=16% Similarity=0.247 Sum_probs=80.9
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
+...+....+.++..++...+..+|||+||| +|..|+.||..+.. .|+|+++|.+ +.+++.+++|++ ++ .+|++
T Consensus 82 G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcaG-~G~kt~~la~~~~~-~g~V~a~D~~-~~~l~~~~~n~~r~g~-~~v~~ 157 (309)
T 2b9e_A 82 GHLILQDRASCLPAMLLDPPPGSHVIDACAA-PGNKTSHLAALLKN-QGKIFAFDLD-AKRLASMATLLARAGV-SCCEL 157 (309)
T ss_dssp TSEEECCTGGGHHHHHHCCCTTCEEEESSCT-TCHHHHHHHHHHTT-CSEEEEEESC-HHHHHHHHHHHHHTTC-CSEEE
T ss_pred CeEEEECHHHHHHHHHhCCCCCCEEEEeCCC-hhHHHHHHHHHhCC-CCEEEEEeCC-HHHHHHHHHHHHHcCC-CeEEE
Confidence 4444555566777777777888999999996 99999999988754 6999999999 999999999997 66 57999
Q ss_pred EEcchhhhhhhc--CCCccEEEEcCCC
Q 042616 98 VKGDAQKLLMGD--YRGADFVLIDCNI 122 (220)
Q Consensus 98 v~gda~~~L~~~--~~~~D~VfiD~~k 122 (220)
+++|+.++.+.. ..+||.|++|++-
T Consensus 158 ~~~D~~~~~~~~~~~~~fD~Vl~D~Pc 184 (309)
T 2b9e_A 158 AEEDFLAVSPSDPRYHEVHYILLDPSC 184 (309)
T ss_dssp EECCGGGSCTTCGGGTTEEEEEECCCC
T ss_pred EeCChHhcCccccccCCCCEEEEcCCc
Confidence 999998865432 2579999999764
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-09 Score=93.59 Aligned_cols=96 Identities=13% Similarity=0.030 Sum_probs=71.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeC-CchhHHHHHHHHh-----c--ccC----CcEEEEEcch----
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILS-GVIGDIDASKKSL-----G--RYA----NCIEFVKGDA---- 102 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~-d~~~~~~~Ar~~l-----~--g~~----~~Ve~v~gda---- 102 (220)
.+.++|||+||| +|+.++.++.. . .++|+++|. + +++++.|++|+ + ++. ++|+++..+.
T Consensus 78 ~~~~~vLDlG~G-~G~~~~~~a~~-~--~~~v~~~D~s~-~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~ 152 (281)
T 3bzb_A 78 IAGKTVCELGAG-AGLVSIVAFLA-G--ADQVVATDYPD-PEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSP 152 (281)
T ss_dssp TTTCEEEETTCT-TSHHHHHHHHT-T--CSEEEEEECSC-HHHHHHHHHHHHTTCC----------CCCEEEECCTTSCT
T ss_pred cCCCeEEEeccc-ccHHHHHHHHc-C--CCEEEEEeCCC-HHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCcc
Confidence 467899999997 99999988874 1 359999999 9 99999999998 4 443 4788885543
Q ss_pred hhhhhh-cCCCccEEEE-cCCCCCccHHHHHHHHHhhcCCC
Q 042616 103 QKLLMG-DYRGADFVLI-DCNIDIDGHKNVFRAAKESVMHG 141 (220)
Q Consensus 103 ~~~L~~-~~~~~D~Vfi-D~~k~~~~y~~~l~~l~~~~~L~ 141 (220)
.++.+. ..++||+|+. |.-....++..+++.+.+. |+
T Consensus 153 ~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~--Lk 191 (281)
T 3bzb_A 153 DSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKML--LA 191 (281)
T ss_dssp HHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHH--BC
T ss_pred HHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHH--hc
Confidence 233221 1468999987 7655335678899999998 86
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=9e-10 Score=93.72 Aligned_cols=104 Identities=10% Similarity=-0.023 Sum_probs=81.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+..+||||||| +|..+..|+.. + .++|+++|++ +.+++.|++++. ++..+++++++|+.+......++||+|
T Consensus 63 ~~~~~vLDiGcG-~G~~~~~l~~~-~--~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v 137 (298)
T 1ri5_A 63 KRGDSVLDLGCG-KGGDLLKYERA-G--IGEYYGVDIA-EVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVI 137 (298)
T ss_dssp CTTCEEEEETCT-TTTTHHHHHHH-T--CSEEEEEESC-HHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCCCeEEEECCC-CCHHHHHHHHC-C--CCEEEEEECC-HHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEE
Confidence 577899999997 99988888764 1 4699999999 999999999987 555689999999987421124689999
Q ss_pred EEcCCCC-----CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 117 LIDCNID-----IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 117 fiD~~k~-----~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+...... ..+....++.+.+. |+| ||.+++.
T Consensus 138 ~~~~~l~~~~~~~~~~~~~l~~~~~~--Lkp-gG~l~~~ 173 (298)
T 1ri5_A 138 SSQFSFHYAFSTSESLDIAQRNIARH--LRP-GGYFIMT 173 (298)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHT--EEE-EEEEEEE
T ss_pred EECchhhhhcCCHHHHHHHHHHHHHh--cCC-CCEEEEE
Confidence 9875431 13457788999988 876 8887765
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.8e-10 Score=90.31 Aligned_cols=103 Identities=13% Similarity=0.076 Sum_probs=80.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--cc----CCcEEEEEcchhhhhhhcCCC
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RY----ANCIEFVKGDAQKLLMGDYRG 112 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~----~~~Ve~v~gda~~~L~~~~~~ 112 (220)
.+..+|||+||| +|..+..|+.. +.+|+++|.+ +.+++.|++++. ++ .++++++++|+.+. +...++
T Consensus 29 ~~~~~vLdiG~G-~G~~~~~l~~~----~~~v~~vD~s-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~ 101 (235)
T 3sm3_A 29 QEDDEILDIGCG-SGKISLELASK----GYSVTGIDIN-SEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-SFHDSS 101 (235)
T ss_dssp CTTCEEEEETCT-TSHHHHHHHHT----TCEEEEEESC-HHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-CSCTTC
T ss_pred CCCCeEEEECCC-CCHHHHHHHhC----CCeEEEEECC-HHHHHHHHHHHHhcCCccccCcceEEEEeccccc-CCCCCc
Confidence 467899999997 99999999875 6799999999 999999999986 43 24699999999874 332578
Q ss_pred ccEEEEcCCCCC-cc---HHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 113 ADFVLIDCNIDI-DG---HKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 113 ~D~VfiD~~k~~-~~---y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
||+|+....... .+ ...+++.+.+. |+| ||.+++-.
T Consensus 102 ~D~v~~~~~l~~~~~~~~~~~~l~~~~~~--L~p-gG~l~~~~ 141 (235)
T 3sm3_A 102 FDFAVMQAFLTSVPDPKERSRIIKEVFRV--LKP-GAYLYLVE 141 (235)
T ss_dssp EEEEEEESCGGGCCCHHHHHHHHHHHHHH--EEE-EEEEEEEE
T ss_pred eeEEEEcchhhcCCCHHHHHHHHHHHHHH--cCC-CeEEEEEE
Confidence 999998764311 12 23789999998 886 77776643
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.1e-10 Score=102.34 Aligned_cols=111 Identities=14% Similarity=-0.029 Sum_probs=81.4
Q ss_pred HHHHHHHhh--CCCCEEEEEcCCc-----hHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch
Q 042616 30 EFISALAAG--NNAQLIVMACSSI-----AVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA 102 (220)
Q Consensus 30 ~~L~~La~~--~~a~~ILEIGtg~-----~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda 102 (220)
+++..+... .++.+|||||||+ +|..++.++....+ +++|++||.+ +++. . ...+|+++++|+
T Consensus 204 ~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP-~a~V~GVDiS-p~m~-------~-~~~rI~fv~GDa 273 (419)
T 3sso_A 204 PHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFP-RGQIYGLDIM-DKSH-------V-DELRIRTIQGDQ 273 (419)
T ss_dssp HHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCT-TCEEEEEESS-CCGG-------G-CBTTEEEEECCT
T ss_pred HHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCC-CCEEEEEECC-HHHh-------h-cCCCcEEEEecc
Confidence 344444332 3689999999962 46677888776544 7899999999 7752 1 126899999999
Q ss_pred hhh--hhhc---CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 103 QKL--LMGD---YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 103 ~~~--L~~~---~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+. +..+ .++||+||.|+.+...++...|+.+.+. |+| ||++++.|+.
T Consensus 274 ~dlpf~~~l~~~d~sFDlVisdgsH~~~d~~~aL~el~rv--LKP-GGvlVi~Dl~ 326 (419)
T 3sso_A 274 NDAEFLDRIARRYGPFDIVIDDGSHINAHVRTSFAALFPH--VRP-GGLYVIEDMW 326 (419)
T ss_dssp TCHHHHHHHHHHHCCEEEEEECSCCCHHHHHHHHHHHGGG--EEE-EEEEEEECGG
T ss_pred cccchhhhhhcccCCccEEEECCcccchhHHHHHHHHHHh--cCC-CeEEEEEecc
Confidence 763 2111 3789999999876334567889999998 886 9999999887
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-09 Score=96.47 Aligned_cols=102 Identities=7% Similarity=0.040 Sum_probs=80.3
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
...+.++||||||| +|..++.++.+ ..++|++||.+ + +++.|+++++ ++.++|+++.+|+.+.- +.++||
T Consensus 47 ~~~~~~~VLDiGcG-tG~ls~~la~~---g~~~V~~vD~s-~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~~D 118 (348)
T 2y1w_A 47 TDFKDKIVLDVGCG-SGILSFFAAQA---GARKIYAVEAS-T-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--LPEQVD 118 (348)
T ss_dssp GGTTTCEEEEETCT-TSHHHHHHHHT---TCSEEEEEECS-T-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--CSSCEE
T ss_pred ccCCcCEEEEcCCC-ccHHHHHHHhC---CCCEEEEECCH-H-HHHHHHHHHHHcCCCCcEEEEEcchhhCC--CCCcee
Confidence 44578999999997 99999988874 14699999999 7 7899999886 67688999999998752 236899
Q ss_pred EEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 115 FVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 115 ~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|+..... ....+.+.+..+.+. |+| ||+++.
T Consensus 119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~li~ 153 (348)
T 2y1w_A 119 IIISEPMGYMLFNERMLESYLHAKKY--LKP-SGNMFP 153 (348)
T ss_dssp EEEECCCBTTBTTTSHHHHHHHGGGG--EEE-EEEEES
T ss_pred EEEEeCchhcCChHHHHHHHHHHHhh--cCC-CeEEEE
Confidence 99988532 114567788888887 876 888873
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=88.80 Aligned_cols=106 Identities=13% Similarity=-0.001 Sum_probs=81.6
Q ss_pred HHHHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh
Q 042616 29 GEFISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 29 ~~~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~ 107 (220)
.+.+..++. ..+..+|||+||| +|..+..|+.. +.+|+++|.+ +.+++.|++++ +++++++|+.+..
T Consensus 31 ~~~~~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~----~~~v~~vD~s-~~~~~~a~~~~-----~~~~~~~d~~~~~- 98 (211)
T 3e23_A 31 SATLTKFLGELPAGAKILELGCG-AGYQAEAMLAA----GFDVDATDGS-PELAAEASRRL-----GRPVRTMLFHQLD- 98 (211)
T ss_dssp CHHHHHHHTTSCTTCEEEESSCT-TSHHHHHHHHT----TCEEEEEESC-HHHHHHHHHHH-----TSCCEECCGGGCC-
T ss_pred hHHHHHHHHhcCCCCcEEEECCC-CCHHHHHHHHc----CCeEEEECCC-HHHHHHHHHhc-----CCceEEeeeccCC-
Confidence 334444444 3457899999997 99999999874 6799999999 99999999987 4778889988753
Q ss_pred hcCCCccEEEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 108 GDYRGADFVLIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..++||+|+....... .+...+++.+.+. |+| ||++++.
T Consensus 99 -~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~--Lkp-gG~l~~~ 140 (211)
T 3e23_A 99 -AIDAYDAVWAHACLLHVPRDELADVLKLIWRA--LKP-GGLFYAS 140 (211)
T ss_dssp -CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred -CCCcEEEEEecCchhhcCHHHHHHHHHHHHHh--cCC-CcEEEEE
Confidence 3578999998764311 2556889999998 886 7877765
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.03 E-value=2e-10 Score=98.73 Aligned_cols=88 Identities=17% Similarity=0.109 Sum_probs=71.3
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCch-------hHHHHHHHHhc--ccCCcEEEEE
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVI-------GDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~-------~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
.++|...+...+..+|||+||| +|..|+.||.. +++|++||.+ + ++++.|++|++ ++.++|++++
T Consensus 72 ~~~l~~a~~~~~~~~VLDlgcG-~G~~a~~lA~~----g~~V~~vD~s-~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~ 145 (258)
T 2r6z_A 72 GELIAKAVNHTAHPTVWDATAG-LGRDSFVLASL----GLTVTAFEQH-PAVACLLSDGIRRALLNPETQDTAARINLHF 145 (258)
T ss_dssp -CHHHHHTTGGGCCCEEETTCT-TCHHHHHHHHT----TCCEEEEECC-HHHHHHHHHHHHHHHHSHHHHHHHTTEEEEE
T ss_pred hHHHHHHhCcCCcCeEEEeeCc-cCHHHHHHHHh----CCEEEEEECC-hhhhHHHHHHHHHHHhHHHhhCCccCeEEEE
Confidence 3455554455556899999997 99999999973 6899999999 9 99999999886 6656799999
Q ss_pred cchhhhhhhcC---CCccEEEEcCCC
Q 042616 100 GDAQKLLMGDY---RGADFVLIDCNI 122 (220)
Q Consensus 100 gda~~~L~~~~---~~~D~VfiD~~k 122 (220)
+|+.++++.+. ++||+|++|+.-
T Consensus 146 ~d~~~~l~~~~~~~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 146 GNAAEQMPALVKTQGKPDIVYLDPMY 171 (258)
T ss_dssp SCHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred CCHHHHHHhhhccCCCccEEEECCCC
Confidence 99999886543 689999999743
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.6e-10 Score=92.85 Aligned_cols=101 Identities=15% Similarity=0.049 Sum_probs=81.3
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
...++.+|||+||| +|..+..|+...+ +++|+++|++ +.+++.|+++. .+++++++|+.+.. ..++||+|
T Consensus 30 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~--~~~v~~~D~s-~~~~~~a~~~~----~~~~~~~~d~~~~~--~~~~fD~v 99 (259)
T 2p35_A 30 PLERVLNGYDLGCG-PGNSTELLTDRYG--VNVITGIDSD-DDMLEKAADRL----PNTNFGKADLATWK--PAQKADLL 99 (259)
T ss_dssp CCSCCSSEEEETCT-TTHHHHHHHHHHC--TTSEEEEESC-HHHHHHHHHHS----TTSEEEECCTTTCC--CSSCEEEE
T ss_pred CCCCCCEEEEecCc-CCHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHhC----CCcEEEECChhhcC--ccCCcCEE
Confidence 34567899999997 9999999998764 6899999999 99999999883 57999999998754 35789999
Q ss_pred EEcCCCC-CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 117 LIDCNID-IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 117 fiD~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+...... -.+....++.+.+. |+| ||.+++.
T Consensus 100 ~~~~~l~~~~~~~~~l~~~~~~--L~p-gG~l~~~ 131 (259)
T 2p35_A 100 YANAVFQWVPDHLAVLSQLMDQ--LES-GGVLAVQ 131 (259)
T ss_dssp EEESCGGGSTTHHHHHHHHGGG--EEE-EEEEEEE
T ss_pred EEeCchhhCCCHHHHHHHHHHh--cCC-CeEEEEE
Confidence 9876431 13568889999998 887 7776664
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.02 E-value=5.1e-10 Score=94.21 Aligned_cols=115 Identities=14% Similarity=0.052 Sum_probs=82.4
Q ss_pred HHHHHHHhhC---CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcc-----cCCc-------
Q 042616 30 EFISALAAGN---NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGR-----YANC------- 94 (220)
Q Consensus 30 ~~L~~La~~~---~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g-----~~~~------- 94 (220)
+++..+.... ++.+|||+||| +|..++.|+..+...+.+|+++|.+ +.+++.|++++.. +.++
T Consensus 38 ~l~~~~l~~~~~~~~~~vLD~gcG-sG~~~~~la~~~~~~~~~v~gvDis-~~~l~~A~~~~~~~~~~~~~~~~~~~~~~ 115 (250)
T 1o9g_A 38 EIFQRALARLPGDGPVTLWDPCCG-SGYLLTVLGLLHRRSLRQVIASDVD-PAPLELAAKNLALLSPAGLTARELERREQ 115 (250)
T ss_dssp HHHHHHHHTSSCCSCEEEEETTCT-TSHHHHHHHHHTGGGEEEEEEEESC-HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCeEEECCCC-CCHHHHHHHHHhccCCCeEEEEECC-HHHHHHHHHHHHHhhhccccccchhhhhh
Confidence 4555554432 56799999997 9999999998631125799999999 9999999988752 2122
Q ss_pred ------------------EE-------------EEEcchhhhhhh----cCCCccEEEEcCCCC----------CccHHH
Q 042616 95 ------------------IE-------------FVKGDAQKLLMG----DYRGADFVLIDCNID----------IDGHKN 129 (220)
Q Consensus 95 ------------------Ve-------------~v~gda~~~L~~----~~~~~D~VfiD~~k~----------~~~y~~ 129 (220)
|+ ++++|+.+.++. ...+||+||.+.+-. ...+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~ 195 (250)
T 1o9g_A 116 SERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAG 195 (250)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHH
T ss_pred hhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHH
Confidence 67 999999886531 234899999985420 023568
Q ss_pred HHHHHHhhcCCCCCCEEEEE
Q 042616 130 VFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 130 ~l~~l~~~~~L~~~Ggviv~ 149 (220)
+++.+.+. |+| ||++++
T Consensus 196 ~l~~~~~~--Lkp-gG~l~~ 212 (250)
T 1o9g_A 196 LLRSLASA--LPA-HAVIAV 212 (250)
T ss_dssp HHHHHHHH--SCT-TCEEEE
T ss_pred HHHHHHHh--cCC-CcEEEE
Confidence 88999998 887 666554
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=93.38 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=82.8
Q ss_pred HHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCC
Q 042616 32 ISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYR 111 (220)
Q Consensus 32 L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~ 111 (220)
+...+...++.+||||||| +|..+..|+. + +++|+++|++ +.+++.|++++ .+++++++|+.+ ++. .+
T Consensus 49 l~~~l~~~~~~~vLDiGcG-~G~~~~~l~~---~-~~~v~gvD~s-~~~~~~a~~~~----~~~~~~~~d~~~-~~~-~~ 116 (279)
T 3ccf_A 49 LLQLLNPQPGEFILDLGCG-TGQLTEKIAQ---S-GAEVLGTDNA-ATMIEKARQNY----PHLHFDVADARN-FRV-DK 116 (279)
T ss_dssp HHHHHCCCTTCEEEEETCT-TSHHHHHHHH---T-TCEEEEEESC-HHHHHHHHHHC----TTSCEEECCTTT-CCC-SS
T ss_pred HHHHhCCCCCCEEEEecCC-CCHHHHHHHh---C-CCeEEEEECC-HHHHHHHHhhC----CCCEEEECChhh-CCc-CC
Confidence 3344456678899999997 9999999987 2 7899999999 99999999876 578999999987 443 57
Q ss_pred CccEEEEcCCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 112 GADFVLIDCNIDI-DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 112 ~~D~VfiD~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+||+|+....... .+....++.+.+. |+| ||.+++.
T Consensus 117 ~fD~v~~~~~l~~~~d~~~~l~~~~~~--Lkp-gG~l~~~ 153 (279)
T 3ccf_A 117 PLDAVFSNAMLHWVKEPEAAIASIHQA--LKS-GGRFVAE 153 (279)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred CcCEEEEcchhhhCcCHHHHHHHHHHh--cCC-CcEEEEE
Confidence 8999998764311 4567889999998 886 8877764
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-09 Score=90.05 Aligned_cols=103 Identities=5% Similarity=0.000 Sum_probs=75.1
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHH----HHHhc--ccCCcEEEEEcchhhhhhhcC
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDAS----KKSLG--RYANCIEFVKGDAQKLLMGDY 110 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~A----r~~l~--g~~~~Ve~v~gda~~~L~~~~ 110 (220)
...+..+|||+||| +|..+..|+...+ +++|++||.+ +++++.+ +++.. ++ .+++++++|+.+ +|...
T Consensus 24 ~~~~~~~vLDiGcG-~G~~~~~la~~~p--~~~v~gvD~s-~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~-l~~~~ 97 (218)
T 3mq2_A 24 RSQYDDVVLDVGTG-DGKHPYKVARQNP--SRLVVALDAD-KSRMEKISAKAAAKPAKGGL-PNLLYLWATAER-LPPLS 97 (218)
T ss_dssp HTTSSEEEEEESCT-TCHHHHHHHHHCT--TEEEEEEESC-GGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTT-CCSCC
T ss_pred hccCCCEEEEecCC-CCHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHHHHHHhhhhcCC-CceEEEecchhh-CCCCC
Confidence 45677899999997 9999999998643 6899999999 9977743 33332 33 579999999988 44433
Q ss_pred CCccEEEEcCCCC------CccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 111 RGADFVLIDCNID------IDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 111 ~~~D~VfiD~~k~------~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+. |.+++..... ..+...+++.+.+. |+| ||.+++
T Consensus 98 ~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~l~~ 138 (218)
T 3mq2_A 98 GV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAV--CRP-GASFLV 138 (218)
T ss_dssp CE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHT--EEE-EEEEEE
T ss_pred CC-CEEEEEccchhhhhhhhccHHHHHHHHHHH--cCC-CcEEEE
Confidence 44 8877655320 01226788999998 887 787776
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.02 E-value=9.8e-10 Score=93.02 Aligned_cols=112 Identities=16% Similarity=0.088 Sum_probs=86.6
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA 102 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda 102 (220)
...+...+.+..++...++.+||||||| +|..+..|+. + +.+|+++|++ +.+++.|+++. +++++++|+
T Consensus 17 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG-~G~~~~~l~~---~-~~~v~gvD~s-~~~~~~a~~~~-----~~~~~~~d~ 85 (261)
T 3ege_A 17 VPDIRIVNAIINLLNLPKGSVIADIGAG-TGGYSVALAN---Q-GLFVYAVEPS-IVMRQQAVVHP-----QVEWFTGYA 85 (261)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEETCT-TSHHHHHHHT---T-TCEEEEECSC-HHHHHSSCCCT-----TEEEECCCT
T ss_pred cccHHHHHHHHHHhCCCCCCEEEEEcCc-ccHHHHHHHh---C-CCEEEEEeCC-HHHHHHHHhcc-----CCEEEECch
Confidence 3456677777777777788999999997 9999999986 2 7899999999 88887766653 799999999
Q ss_pred hhhhhhcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCE-EEEEe
Q 042616 103 QKLLMGDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAG-VIVGY 150 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Gg-viv~d 150 (220)
.+ ++...++||+|+.-... .-.+....++.+.+. |+ || +++.+
T Consensus 86 ~~-~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~--Lk--gG~~~~~~ 130 (261)
T 3ege_A 86 EN-LALPDKSVDGVISILAIHHFSHLEKSFQEMQRI--IR--DGTIVLLT 130 (261)
T ss_dssp TS-CCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHH--BC--SSCEEEEE
T ss_pred hh-CCCCCCCEeEEEEcchHhhccCHHHHHHHHHHH--hC--CcEEEEEE
Confidence 77 44324789999987643 115678899999998 85 55 55554
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-09 Score=89.84 Aligned_cols=104 Identities=12% Similarity=0.067 Sum_probs=80.6
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
..++.+||||||| +|..+..|+... ..+|+++|++ +.+++.|++++... .+++++++|+.+. +...++||+|+
T Consensus 91 ~~~~~~vLDiG~G-~G~~~~~l~~~~---~~~v~~vD~s-~~~~~~a~~~~~~~-~~~~~~~~d~~~~-~~~~~~fD~v~ 163 (254)
T 1xtp_A 91 GHGTSRALDCGAG-IGRITKNLLTKL---YATTDLLEPV-KHMLEEAKRELAGM-PVGKFILASMETA-TLPPNTYDLIV 163 (254)
T ss_dssp TCCCSEEEEETCT-TTHHHHHTHHHH---CSEEEEEESC-HHHHHHHHHHTTTS-SEEEEEESCGGGC-CCCSSCEEEEE
T ss_pred ccCCCEEEEECCC-cCHHHHHHHHhh---cCEEEEEeCC-HHHHHHHHHHhccC-CceEEEEccHHHC-CCCCCCeEEEE
Confidence 3457899999997 999999988764 4689999999 99999999998744 6799999999874 32246899999
Q ss_pred EcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEE-ec
Q 042616 118 IDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVG-YN 151 (220)
Q Consensus 118 iD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~-dN 151 (220)
....... .+...+++.+.+. |+| ||.+++ ++
T Consensus 164 ~~~~l~~~~~~~~~~~l~~~~~~--Lkp-gG~l~i~~~ 198 (254)
T 1xtp_A 164 IQWTAIYLTDADFVKFFKHCQQA--LTP-NGYIFFKEN 198 (254)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHH--EEE-EEEEEEEEE
T ss_pred EcchhhhCCHHHHHHHHHHHHHh--cCC-CeEEEEEec
Confidence 8665311 2356788999998 887 665544 44
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-09 Score=85.90 Aligned_cols=104 Identities=13% Similarity=0.020 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHhh--CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh
Q 042616 26 PDVGEFISALAAG--NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ 103 (220)
Q Consensus 26 p~~~~~L~~La~~--~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~ 103 (220)
|+...++.. ... .++.+|||+||| +|..++.|+.. + +|++||.+ +.+++. ..+++++++|+.
T Consensus 8 ~~~~~l~~~-l~~~~~~~~~vLD~GcG-~G~~~~~l~~~----~-~v~gvD~s-~~~~~~--------~~~~~~~~~d~~ 71 (170)
T 3q87_B 8 EDTYTLMDA-LEREGLEMKIVLDLGTS-TGVITEQLRKR----N-TVVSTDLN-IRALES--------HRGGNLVRADLL 71 (170)
T ss_dssp HHHHHHHHH-HHHHTCCSCEEEEETCT-TCHHHHHHTTT----S-EEEEEESC-HHHHHT--------CSSSCEEECSTT
T ss_pred ccHHHHHHH-HHhhcCCCCeEEEeccC-ccHHHHHHHhc----C-cEEEEECC-HHHHhc--------ccCCeEEECChh
Confidence 444444444 454 677899999997 99999988763 4 99999999 888876 367999999998
Q ss_pred hhhhhcCCCccEEEEcCCCCC----------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 104 KLLMGDYRGADFVLIDCNIDI----------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k~~----------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.++. ++||+|+.+.+-.. .+....++.+.+. + |.|-+++..
T Consensus 72 ~~~~~--~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l-pgG~l~~~~ 123 (170)
T 3q87_B 72 CSINQ--ESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDA--V-TVGMLYLLV 123 (170)
T ss_dssp TTBCG--GGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHH--C-CSSEEEEEE
T ss_pred hhccc--CCCCEEEECCCCccCCccccccCCcchHHHHHHHHhh--C-CCCEEEEEE
Confidence 85543 78999999876410 1235677888887 7 644444444
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.6e-09 Score=86.54 Aligned_cols=103 Identities=12% Similarity=0.028 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.++.+|||+||| +|..+..|+... .+++++|++ +.+++.|++++ .+++++++|+.+.. . .++||+|+.
T Consensus 39 ~~~~~vLdiG~G-~G~~~~~l~~~~----~~v~~~D~s-~~~~~~a~~~~----~~~~~~~~d~~~~~-~-~~~~D~v~~ 106 (239)
T 3bxo_A 39 PEASSLLDVACG-TGTHLEHFTKEF----GDTAGLELS-EDMLTHARKRL----PDATLHQGDMRDFR-L-GRKFSAVVS 106 (239)
T ss_dssp TTCCEEEEETCT-TSHHHHHHHHHH----SEEEEEESC-HHHHHHHHHHC----TTCEEEECCTTTCC-C-SSCEEEEEE
T ss_pred CCCCeEEEeccc-CCHHHHHHHHhC----CcEEEEeCC-HHHHHHHHHhC----CCCEEEECCHHHcc-c-CCCCcEEEE
Confidence 467899999997 999999998863 489999999 99999999886 46899999998743 2 568999994
Q ss_pred cCC----C-CCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 119 DCN----I-DIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 119 D~~----k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
-.. . +..+....++.+.+. |+| ||.+++.....+.
T Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~~~--L~p-gG~l~~~~~~~~~ 146 (239)
T 3bxo_A 107 MFSSVGYLKTTEELGAAVASFAEH--LEP-GGVVVVEPWWFPE 146 (239)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHHT--EEE-EEEEEECCCCCTT
T ss_pred cCchHhhcCCHHHHHHHHHHHHHh--cCC-CeEEEEEeccCcc
Confidence 321 1 013456788899988 876 9998887554433
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-09 Score=105.55 Aligned_cols=113 Identities=12% Similarity=-0.013 Sum_probs=84.2
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--------ccCCcEEEEEc
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--------RYANCIEFVKG 100 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--------g~~~~Ve~v~g 100 (220)
.+++..++...++.+||||||| +|+.++.|+...++ ..+|++||++ +.+++.|+++++ ++ .+|+++++
T Consensus 710 le~LLelL~~~~g~rVLDVGCG-TG~lai~LAr~g~p-~a~VtGVDIS-~emLe~AReRLa~~lnAkr~gl-~nVefiqG 785 (950)
T 3htx_A 710 VEYALKHIRESSASTLVDFGCG-SGSLLDSLLDYPTS-LQTIIGVDIS-PKGLARAAKMLHVKLNKEACNV-KSATLYDG 785 (950)
T ss_dssp HHHHHHHHHHSCCSEEEEETCS-SSHHHHHHTSSCCC-CCEEEEEESC-HHHHHHHHHHHHHHTTTTCSSC-SEEEEEES
T ss_pred HHHHHHHhcccCCCEEEEECCC-CCHHHHHHHHhCCC-CCeEEEEECC-HHHHHHHHHHhhhccchhhcCC-CceEEEEC
Confidence 3445555566788999999997 99999999875432 4799999999 999999999664 22 47999999
Q ss_pred chhhhhhhcCCCccEEEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|+.++ +...++||+|+...-... .....+++.+.+. |+| |.+|+.
T Consensus 786 Da~dL-p~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~Rv--LKP-G~LIIS 833 (950)
T 3htx_A 786 SILEF-DSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSL--FHP-KLLIVS 833 (950)
T ss_dssp CTTSC-CTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHT--TCC-SEEEEE
T ss_pred chHhC-CcccCCeeEEEEeCchhhCChHHHHHHHHHHHHH--cCC-CEEEEE
Confidence 99884 333578999998665411 1223477888888 887 755554
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-09 Score=93.16 Aligned_cols=112 Identities=15% Similarity=0.047 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh-
Q 042616 26 PDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK- 104 (220)
Q Consensus 26 p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~- 104 (220)
|...+.+..++...+..+||||||| +|..|+.|+.. +.+|++||.+ +.+++.|++++... .+.....+...
T Consensus 31 ~~~~~~il~~l~l~~g~~VLDlGcG-tG~~a~~La~~----g~~V~gvD~S-~~ml~~Ar~~~~~~--~v~~~~~~~~~~ 102 (261)
T 3iv6_A 31 PSDRENDIFLENIVPGSTVAVIGAS-TRFLIEKALER----GASVTVFDFS-QRMCDDLAEALADR--CVTIDLLDITAE 102 (261)
T ss_dssp CCHHHHHHHTTTCCTTCEEEEECTT-CHHHHHHHHHT----TCEEEEEESC-HHHHHHHHHHTSSS--CCEEEECCTTSC
T ss_pred HHHHHHHHHhcCCCCcCEEEEEeCc-chHHHHHHHhc----CCEEEEEECC-HHHHHHHHHHHHhc--cceeeeeecccc
Confidence 4455555555566778899999997 99999999874 6899999999 99999999998632 22222222211
Q ss_pred hhhhcCCCccEEEEcCCCC---CccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 105 LLMGDYRGADFVLIDCNID---IDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~~k~---~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
......++||+|+.+.--. ..+....++.+.+. | | ||.+++
T Consensus 103 ~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~l--L-P-GG~l~l 146 (261)
T 3iv6_A 103 IPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSL--V-G-SGTVRA 146 (261)
T ss_dssp CCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHH--H-T-TSEEEE
T ss_pred cccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHh--C-c-CcEEEE
Confidence 0112246899999987531 12445678888887 7 7 666554
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-09 Score=84.65 Aligned_cols=105 Identities=12% Similarity=0.071 Sum_probs=75.2
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh----
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL---- 105 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~---- 105 (220)
+++..+....+..+|||+||| +|..+..|+....+ +.+++++|.+ + +++. .+++++++|+.+.
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G-~G~~~~~l~~~~~~-~~~v~~~D~~-~-~~~~---------~~~~~~~~d~~~~~~~~ 78 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAA-PGGWSQYVVTQIGG-KGRIIACDLL-P-MDPI---------VGVDFLQGDFRDELVMK 78 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCT-TCHHHHHHHHHHCT-TCEEEEEESS-C-CCCC---------TTEEEEESCTTSHHHHH
T ss_pred HHHHHhCCCCCCCeEEEeCCC-CCHHHHHHHHHhCC-CCeEEEEECc-c-cccc---------CcEEEEEcccccchhhh
Confidence 333333334567899999997 89999999987644 6899999999 6 4321 5799999998764
Q ss_pred -hhh-c-CCCccEEEEcCCCCC-ccH-----------HHHHHHHHhhcCCCCCCEEEEEe
Q 042616 106 -LMG-D-YRGADFVLIDCNIDI-DGH-----------KNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 106 -L~~-~-~~~~D~VfiD~~k~~-~~y-----------~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++. . .++||+|+.|..... ... ...++.+.+. |+| ||.+++.
T Consensus 79 ~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--L~~-gG~l~~~ 135 (180)
T 1ej0_A 79 ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDV--LAP-GGSFVVK 135 (180)
T ss_dssp HHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred hhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHH--cCC-CcEEEEE
Confidence 111 1 368999999876411 122 5778888888 876 8877764
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-09 Score=98.01 Aligned_cols=104 Identities=9% Similarity=0.087 Sum_probs=79.5
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
...+.+.||||||| +|..++..|++- ..+|++||.+ + +++.|+++++ ++.++|++++++++++ .+.+++|
T Consensus 80 ~~~~~k~VLDvG~G-tGiLs~~Aa~aG---A~~V~ave~s-~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~--~lpe~~D 151 (376)
T 4hc4_A 80 AALRGKTVLDVGAG-TGILSIFCAQAG---ARRVYAVEAS-A-IWQQAREVVRFNGLEDRVHVLPGPVETV--ELPEQVD 151 (376)
T ss_dssp HHHTTCEEEEETCT-TSHHHHHHHHTT---CSEEEEEECS-T-THHHHHHHHHHTTCTTTEEEEESCTTTC--CCSSCEE
T ss_pred HhcCCCEEEEeCCC-ccHHHHHHHHhC---CCEEEEEeCh-H-HHHHHHHHHHHcCCCceEEEEeeeeeee--cCCcccc
Confidence 34578999999997 999998888752 2589999999 6 7899999987 8889999999999885 2347899
Q ss_pred EEEEc---CCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 115 FVLID---CNIDI-DGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 115 ~VfiD---~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+|+-. ..... .....++....+. |+| ||+++-+-
T Consensus 152 vivsE~~~~~l~~e~~l~~~l~a~~r~--Lkp-~G~~iP~~ 189 (376)
T 4hc4_A 152 AIVSEWMGYGLLHESMLSSVLHARTKW--LKE-GGLLLPAS 189 (376)
T ss_dssp EEECCCCBTTBTTTCSHHHHHHHHHHH--EEE-EEEEESCE
T ss_pred EEEeecccccccccchhhhHHHHHHhh--CCC-CceECCcc
Confidence 99853 22211 3456777777777 876 88877543
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.9e-10 Score=90.15 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=81.9
Q ss_pred HHHHHHhh-CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc
Q 042616 31 FISALAAG-NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 31 ~L~~La~~-~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~ 109 (220)
+...+... .+..+|||+||| +|..++.|+... ..+|+++|.+ +.+++.|++++... .+++++++|+.+. +..
T Consensus 32 ~~~~l~~~~~~~~~vLdiGcG-~G~~~~~l~~~~---~~~v~~~D~s-~~~~~~a~~~~~~~-~~i~~~~~d~~~~-~~~ 104 (215)
T 2pxx_A 32 FRALLEPELRPEDRILVLGCG-NSALSYELFLGG---FPNVTSVDYS-SVVVAAMQACYAHV-PQLRWETMDVRKL-DFP 104 (215)
T ss_dssp HHHHHGGGCCTTCCEEEETCT-TCSHHHHHHHTT---CCCEEEEESC-HHHHHHHHHHTTTC-TTCEEEECCTTSC-CSC
T ss_pred HHHHHHHhcCCCCeEEEECCC-CcHHHHHHHHcC---CCcEEEEeCC-HHHHHHHHHhcccC-CCcEEEEcchhcC-CCC
Confidence 44444433 556899999997 899999988752 1389999999 99999999998743 5799999999874 322
Q ss_pred CCCccEEEEcCCCC----------------CccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 110 YRGADFVLIDCNID----------------IDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 110 ~~~~D~VfiD~~k~----------------~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
.++||+|+....-+ ..+....++.+.+. |+| ||.+++-.
T Consensus 105 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~li~~~ 159 (215)
T 2pxx_A 105 SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRV--LVP-GGRFISMT 159 (215)
T ss_dssp SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHH--EEE-EEEEEEEE
T ss_pred CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHh--CcC-CCEEEEEe
Confidence 46899999653210 02447888999998 886 77766643
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.9e-09 Score=92.60 Aligned_cols=107 Identities=15% Similarity=0.002 Sum_probs=82.7
Q ss_pred CC-CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEE
Q 042616 20 GK-RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFV 98 (220)
Q Consensus 20 ~~-~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v 98 (220)
+| ..+.+...+.+...+...+..+||||||| +|+.|..|+.. +++|++||.| +.+++.+++++++. ++++++
T Consensus 29 GQnfL~d~~i~~~Iv~~l~~~~~~~VLEIG~G-~G~lT~~La~~----~~~V~aVEid-~~li~~a~~~~~~~-~~v~vi 101 (295)
T 3gru_A 29 GQCFLIDKNFVNKAVESANLTKDDVVLEIGLG-KGILTEELAKN----AKKVYVIEID-KSLEPYANKLKELY-NNIEII 101 (295)
T ss_dssp -CCEECCHHHHHHHHHHTTCCTTCEEEEECCT-TSHHHHHHHHH----SSEEEEEESC-GGGHHHHHHHHHHC-SSEEEE
T ss_pred CccccCCHHHHHHHHHhcCCCCcCEEEEECCC-chHHHHHHHhc----CCEEEEEECC-HHHHHHHHHHhccC-CCeEEE
Confidence 44 35678888888777777888999999997 99999999986 5799999999 99999999998744 689999
Q ss_pred EcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHh
Q 042616 99 KGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKE 136 (220)
Q Consensus 99 ~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~ 136 (220)
++|+.++-.. ..+||.|+.+.+- .....++..+.+
T Consensus 102 ~gD~l~~~~~-~~~fD~Iv~NlPy--~is~pil~~lL~ 136 (295)
T 3gru_A 102 WGDALKVDLN-KLDFNKVVANLPY--QISSPITFKLIK 136 (295)
T ss_dssp ESCTTTSCGG-GSCCSEEEEECCG--GGHHHHHHHHHH
T ss_pred ECchhhCCcc-cCCccEEEEeCcc--cccHHHHHHHHh
Confidence 9999874211 2479999977665 333444333333
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-09 Score=84.88 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=78.8
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
...+..+|||+||| +|..+..|+... .+++++|.+ +..++.|+++. .+++++.+| ++...++||+|
T Consensus 14 ~~~~~~~vLDiG~G-~G~~~~~l~~~~----~~v~~vD~s-~~~~~~a~~~~----~~v~~~~~d----~~~~~~~~D~v 79 (170)
T 3i9f_A 14 FEGKKGVIVDYGCG-NGFYCKYLLEFA----TKLYCIDIN-VIALKEVKEKF----DSVITLSDP----KEIPDNSVDFI 79 (170)
T ss_dssp HSSCCEEEEEETCT-TCTTHHHHHTTE----EEEEEECSC-HHHHHHHHHHC----TTSEEESSG----GGSCTTCEEEE
T ss_pred CcCCCCeEEEECCC-CCHHHHHHHhhc----CeEEEEeCC-HHHHHHHHHhC----CCcEEEeCC----CCCCCCceEEE
Confidence 55677899999997 899999988753 599999999 99999999982 679999999 33324789999
Q ss_pred EEcCCCC-CccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 117 LIDCNID-IDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 117 fiD~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+...... -.+....++.+.+. |+| ||.++.-+..
T Consensus 80 ~~~~~l~~~~~~~~~l~~~~~~--L~p-gG~l~~~~~~ 114 (170)
T 3i9f_A 80 LFANSFHDMDDKQHVISEVKRI--LKD-DGRVIIIDWR 114 (170)
T ss_dssp EEESCSTTCSCHHHHHHHHHHH--EEE-EEEEEEEEEC
T ss_pred EEccchhcccCHHHHHHHHHHh--cCC-CCEEEEEEcC
Confidence 9876541 14668889999998 886 7777665443
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=9.2e-10 Score=92.25 Aligned_cols=114 Identities=13% Similarity=0.039 Sum_probs=80.9
Q ss_pred ChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHH-HH---HHHHhc--ccCCcEEEE
Q 042616 25 EPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDI-DA---SKKSLG--RYANCIEFV 98 (220)
Q Consensus 25 ~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~-~~---Ar~~l~--g~~~~Ve~v 98 (220)
+-...+++..+ ..++++||||||| +|..++.||... + +.+|++||++ ++.+ +. |++++. ++ .+++++
T Consensus 11 ~~~~~~~~~~~--~~~~~~vLDiGCG-~G~~~~~la~~~-~-~~~v~GvD~s-~~~ml~~A~~A~~~~~~~~~-~~v~~~ 83 (225)
T 3p2e_A 11 DLSKDELTEII--GQFDRVHIDLGTG-DGRNIYKLAIND-Q-NTFYIGIDPV-KENLFDISKKIIKKPSKGGL-SNVVFV 83 (225)
T ss_dssp CCCHHHHHHHH--TTCSEEEEEETCT-TSHHHHHHHHTC-T-TEEEEEECSC-CGGGHHHHHHHTSCGGGTCC-SSEEEE
T ss_pred cCCHHHHHHHh--CCCCCEEEEEecc-CcHHHHHHHHhC-C-CCEEEEEeCC-HHHHHHHHHHHHHHHHHcCC-CCeEEE
Confidence 33344555433 3567899999997 999999998643 2 7899999999 5554 44 477775 55 579999
Q ss_pred Ecchhhhhhh-cCCCccEEEEcCCCC------CccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 99 KGDAQKLLMG-DYRGADFVLIDCNID------IDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 99 ~gda~~~L~~-~~~~~D~VfiD~~k~------~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
++|+.++ |. ..+.+|.+++..+-. ...+...++.+.+. |+| ||.+++
T Consensus 84 ~~d~~~l-~~~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~--Lkp-GG~l~i 137 (225)
T 3p2e_A 84 IAAAESL-PFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADL--AKK-EAHFEF 137 (225)
T ss_dssp CCBTTBC-CGGGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTT--EEE-EEEEEE
T ss_pred EcCHHHh-hhhccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHh--cCC-CcEEEE
Confidence 9999886 43 246788888765320 01345678999998 887 888777
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.94 E-value=6.3e-09 Score=92.68 Aligned_cols=107 Identities=10% Similarity=-0.006 Sum_probs=81.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhh-hhcCCCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLL-MGDYRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L-~~~~~~~D~ 115 (220)
.++++||||||| +|..+..|++..+ +.+++.+|. +..++.|++++. ++.++|+++.+|..+.- | +.++||+
T Consensus 178 ~~~~~vlDvG~G-~G~~~~~l~~~~p--~~~~~~~D~--~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~p~~~D~ 251 (363)
T 3dp7_A 178 HHPKRLLDIGGN-TGKWATQCVQYNK--EVEVTIVDL--PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP-FPTGFDA 251 (363)
T ss_dssp GCCSEEEEESCT-TCHHHHHHHHHST--TCEEEEEEC--HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCC-CCCCCSE
T ss_pred cCCCEEEEeCCC-cCHHHHHHHHhCC--CCEEEEEeC--HHHHHHHHHHHHhcCcccceEEEEccccccCCC-CCCCcCE
Confidence 577999999996 9999999998865 579999997 789999999987 56678999999997741 1 1258999
Q ss_pred EEEcCCCC---CccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 116 VLIDCNID---IDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 116 VfiD~~k~---~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|++-.--. ..+...+++.+.+. |+|.|-+++.+.+.
T Consensus 252 v~~~~vlh~~~~~~~~~~l~~~~~~--L~pgG~l~i~e~~~ 290 (363)
T 3dp7_A 252 VWMSQFLDCFSEEEVISILTRVAQS--IGKDSKVYIMETLW 290 (363)
T ss_dssp EEEESCSTTSCHHHHHHHHHHHHHH--CCTTCEEEEEECCT
T ss_pred EEEechhhhCCHHHHHHHHHHHHHh--cCCCcEEEEEeecc
Confidence 99854331 03345779999998 88744445555444
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.93 E-value=9.8e-10 Score=94.71 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=70.0
Q ss_pred HHHHHHHHhhCCC--CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---------c-cCCcEE
Q 042616 29 GEFISALAAGNNA--QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---------R-YANCIE 96 (220)
Q Consensus 29 ~~~L~~La~~~~a--~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---------g-~~~~Ve 96 (220)
.+.+...+...+. .+|||++|| +|..|+.||.. +++|++||.+ +..++.++++++ + +.++++
T Consensus 75 ~e~l~~al~l~~g~~~~VLDl~~G-~G~dal~lA~~----g~~V~~vE~~-~~~~~l~~~~l~~a~~~~~~~~~l~~~i~ 148 (258)
T 2oyr_A 75 GEAVAKAVGIKGDYLPDVVDATAG-LGRDAFVLASV----GCRVRMLERN-PVVAALLDDGLARGYADAEIGGWLQERLQ 148 (258)
T ss_dssp GSHHHHHTTCBTTBCCCEEETTCT-TCHHHHHHHHH----TCCEEEEECC-HHHHHHHHHHHHHHHHCTTTHHHHHHHEE
T ss_pred HHHHHHHhcccCCCCCEEEEcCCc-CCHHHHHHHHc----CCEEEEEECC-HHHHHHHHHHHHHHHhhHhhhhhhhcCEE
Confidence 3444444455555 799999996 99999999985 6799999999 988777777764 2 335799
Q ss_pred EEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 97 FVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 97 ~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
++++|+.++++.+..+||+||+|+..
T Consensus 149 ~~~~D~~~~L~~~~~~fDvV~lDP~y 174 (258)
T 2oyr_A 149 LIHASSLTALTDITPRPQVVYLDPMF 174 (258)
T ss_dssp EEESCHHHHSTTCSSCCSEEEECCCC
T ss_pred EEECCHHHHHHhCcccCCEEEEcCCC
Confidence 99999999987665679999999865
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.92 E-value=3e-09 Score=98.95 Aligned_cols=99 Identities=7% Similarity=0.044 Sum_probs=76.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+.++||||||| +|..++.++.. ...+|++||.+ + +++.|+++++ ++.++|+++++|+.+.- +.++||+|
T Consensus 157 ~~~~~VLDiGcG-tG~la~~la~~---~~~~V~gvD~s-~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~--~~~~fD~I 228 (480)
T 3b3j_A 157 FKDKIVLDVGCG-SGILSFFAAQA---GARKIYAVEAS-T-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--LPEQVDII 228 (480)
T ss_dssp TTTCEEEEESCS-TTHHHHHHHHT---TCSEEEEEECH-H-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--CSSCEEEE
T ss_pred cCCCEEEEecCc-ccHHHHHHHHc---CCCEEEEEEcH-H-HHHHHHHHHHHcCCCCcEEEEECchhhCc--cCCCeEEE
Confidence 467899999997 99999988863 14699999999 7 8999999987 77788999999998842 23689999
Q ss_pred EEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 117 LIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 117 fiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
+.+..- ..+.+.+.+..+.+. |+| ||+++
T Consensus 229 vs~~~~~~~~~e~~~~~l~~~~~~--Lkp-gG~li 260 (480)
T 3b3j_A 229 ISEPMGYMLFNERMLESYLHAKKY--LKP-SGNMF 260 (480)
T ss_dssp ECCCCHHHHTCHHHHHHHHHGGGG--EEE-EEEEE
T ss_pred EEeCchHhcCcHHHHHHHHHHHHh--cCC-CCEEE
Confidence 987541 013445566666777 876 88877
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.2e-09 Score=86.27 Aligned_cols=97 Identities=11% Similarity=0.054 Sum_probs=76.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+..+|||+||| +|..+..| . ..+++++|++ +.+++.|++++ .+++++++|+.+. +...++||+|+..
T Consensus 36 ~~~~vLdiG~G-~G~~~~~l-----~-~~~v~~vD~s-~~~~~~a~~~~----~~~~~~~~d~~~~-~~~~~~fD~v~~~ 102 (211)
T 2gs9_A 36 PGESLLEVGAG-TGYWLRRL-----P-YPQKVGVEPS-EAMLAVGRRRA----PEATWVRAWGEAL-PFPGESFDVVLLF 102 (211)
T ss_dssp CCSEEEEETCT-TCHHHHHC-----C-CSEEEEECCC-HHHHHHHHHHC----TTSEEECCCTTSC-CSCSSCEEEEEEE
T ss_pred CCCeEEEECCC-CCHhHHhC-----C-CCeEEEEeCC-HHHHHHHHHhC----CCcEEEEcccccC-CCCCCcEEEEEEc
Confidence 67899999997 89988766 1 2399999999 99999999987 5789999998773 3324689999987
Q ss_pred CCCC-CccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 120 CNID-IDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 120 ~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.... -.+....++.+.+. |+| ||.+++...
T Consensus 103 ~~l~~~~~~~~~l~~~~~~--L~p-gG~l~i~~~ 133 (211)
T 2gs9_A 103 TTLEFVEDVERVLLEARRV--LRP-GGALVVGVL 133 (211)
T ss_dssp SCTTTCSCHHHHHHHHHHH--EEE-EEEEEEEEE
T ss_pred ChhhhcCCHHHHHHHHHHH--cCC-CCEEEEEec
Confidence 6541 14678899999998 886 887776543
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.7e-09 Score=91.18 Aligned_cols=109 Identities=14% Similarity=0.206 Sum_probs=85.9
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----c-c-CCcEEEEEcchhhhhhh
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----R-Y-ANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g-~-~~~Ve~v~gda~~~L~~ 108 (220)
|+...+|++||-||.| .|..+-.+++- +...+|+.||+| ++.++.||+++. + + ..+++++.+|+.+++..
T Consensus 78 l~~~p~pk~VLIiGgG-dG~~~revlk~--~~v~~v~~VEID-~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~ 153 (294)
T 3o4f_A 78 LLAHGHAKHVLIIGGG-DGAMLREVTRH--KNVESITMVEID-AGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ 153 (294)
T ss_dssp HHHSSCCCEEEEESCT-TSHHHHHHHTC--TTCCEEEEEESC-HHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC
T ss_pred HhhCCCCCeEEEECCC-chHHHHHHHHc--CCcceEEEEcCC-HHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh
Confidence 4445679999999954 78776666653 225799999999 999999999983 2 2 36799999999999976
Q ss_pred cCCCccEEEEcCCCCC----ccH-HHHHHHHHhhcCCCCCCEEEEEe
Q 042616 109 DYRGADFVLIDCNIDI----DGH-KNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 109 ~~~~~D~VfiD~~k~~----~~y-~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..+.||+|++|..... ..| .++++.+.+. |+| ||++++.
T Consensus 154 ~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~--L~p-~Gv~v~q 197 (294)
T 3o4f_A 154 TSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRC--LNP-GGIFVAQ 197 (294)
T ss_dssp SSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHT--EEE-EEEEEEE
T ss_pred ccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHH--hCC-CCEEEEe
Confidence 6688999999986411 233 6789999998 876 9999985
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-08 Score=86.29 Aligned_cols=107 Identities=8% Similarity=-0.005 Sum_probs=78.6
Q ss_pred CCCCEEEEEcCCch---HHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhh---------
Q 042616 39 NNAQLIVMACSSIA---VSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLL--------- 106 (220)
Q Consensus 39 ~~a~~ILEIGtg~~---G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L--------- 106 (220)
.+..+||||||| + |..+..++...+ +++|+.||.+ +.+++.||+++... ++++++++|..+.-
T Consensus 76 ~~~~~vLDlGcG-~pt~G~~~~~~~~~~p--~~~v~~vD~s-p~~l~~Ar~~~~~~-~~v~~~~~D~~~~~~~~~~~~~~ 150 (274)
T 2qe6_A 76 AGISQFLDLGSG-LPTVQNTHEVAQSVNP--DARVVYVDID-PMVLTHGRALLAKD-PNTAVFTADVRDPEYILNHPDVR 150 (274)
T ss_dssp TCCCEEEEETCC-SCCSSCHHHHHHHHCT--TCEEEEEESS-HHHHHHHHHHHTTC-TTEEEEECCTTCHHHHHHSHHHH
T ss_pred cCCCEEEEECCC-CCCCChHHHHHHHhCC--CCEEEEEECC-hHHHHHHHHhcCCC-CCeEEEEeeCCCchhhhccchhh
Confidence 456899999997 8 977665554433 6899999999 99999999998632 57999999986531
Q ss_pred hhc-CCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 107 MGD-YRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 107 ~~~-~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
..+ ..+||+|++-.-. ...+...+++.+.+. |+| ||.+++.+..
T Consensus 151 ~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~--L~p-GG~l~i~~~~ 198 (274)
T 2qe6_A 151 RMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDA--LAP-GSYLFMTSLV 198 (274)
T ss_dssp HHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHH--SCT-TCEEEEEEEB
T ss_pred ccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHh--CCC-CcEEEEEEec
Confidence 112 2579999976532 113467899999998 886 7776665444
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.6e-09 Score=86.87 Aligned_cols=112 Identities=10% Similarity=-0.033 Sum_probs=82.7
Q ss_pred HHHHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh
Q 042616 29 GEFISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 29 ~~~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~ 107 (220)
.+.+..+.. ..+..+|||+||| +|..+..|+... .+|++||.+ +.+++.|++++.. .+++++++|+.+.-.
T Consensus 44 ~~~~~~~~~~~~~~~~vLD~GcG-~G~~~~~la~~~----~~v~gvD~s-~~~~~~a~~~~~~--~~~~~~~~d~~~~~~ 115 (245)
T 3ggd_A 44 VVDLPRFELLFNPELPLIDFACG-NGTQTKFLSQFF----PRVIGLDVS-KSALEIAAKENTA--ANISYRLLDGLVPEQ 115 (245)
T ss_dssp HHHHHHHTTTSCTTSCEEEETCT-TSHHHHHHHHHS----SCEEEEESC-HHHHHHHHHHSCC--TTEEEEECCTTCHHH
T ss_pred HHHHHHHhhccCCCCeEEEEcCC-CCHHHHHHHHhC----CCEEEEECC-HHHHHHHHHhCcc--cCceEEECccccccc
Confidence 444444443 3456789999997 999999999863 489999999 9999999998842 479999999977432
Q ss_pred hc----CCCccEEEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEE-EEEec
Q 042616 108 GD----YRGADFVLIDCNIDI---DGHKNVFRAAKESVMHGSGAGV-IVGYN 151 (220)
Q Consensus 108 ~~----~~~~D~VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggv-iv~dN 151 (220)
.. ...||+|+...-... .+...+++.+.+. |+| ||. ++++.
T Consensus 116 ~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~l~i~~~ 164 (245)
T 3ggd_A 116 AAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRIL--LGK-QGAMYLIEL 164 (245)
T ss_dssp HHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHH--HTT-TCEEEEEEE
T ss_pred ccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHH--cCC-CCEEEEEeC
Confidence 11 135899998864411 3567899999998 887 665 66654
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.4e-09 Score=86.78 Aligned_cols=115 Identities=7% Similarity=-0.034 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHhh-CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcch
Q 042616 26 PDVGEFISALAAG-NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDA 102 (220)
Q Consensus 26 p~~~~~L~~La~~-~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda 102 (220)
|.--+|....... .++.+|||+||| +|..++.++...+. .+++++|.| +.+++.++++++ |..+++++ .|.
T Consensus 34 p~ld~fY~~~~~~l~~~~~VLDlGCG-~GplAl~l~~~~p~--a~~~A~Di~-~~~leiar~~~~~~g~~~~v~~--~d~ 107 (200)
T 3fzg_A 34 ATLNDFYTYVFGNIKHVSSILDFGCG-FNPLALYQWNENEK--IIYHAYDID-RAEIAFLSSIIGKLKTTIKYRF--LNK 107 (200)
T ss_dssp GGHHHHHHHHHHHSCCCSEEEEETCT-THHHHHHHHCSSCC--CEEEEECSC-HHHHHHHHHHHHHSCCSSEEEE--ECC
T ss_pred HhHHHHHHHHHhhcCCCCeEEEecCC-CCHHHHHHHhcCCC--CEEEEEeCC-HHHHHHHHHHHHhcCCCccEEE--ecc
Confidence 7777787775554 558999999997 99999999877664 599999999 999999999997 66557777 555
Q ss_pred hhhhhhcCCCccEEEEcCCCCCccH---HHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 103 QKLLMGDYRGADFVLIDCNIDIDGH---KNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k~~~~y---~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+..+ .++||+|+.---- ... ...+..+... |+| ||++|.-.+-
T Consensus 108 ~~~~~--~~~~DvVLa~k~L--HlL~~~~~al~~v~~~--L~p-ggvfISfptk 154 (200)
T 3fzg_A 108 ESDVY--KGTYDVVFLLKML--PVLKQQDVNILDFLQL--FHT-QNFVISFPIK 154 (200)
T ss_dssp HHHHT--TSEEEEEEEETCH--HHHHHTTCCHHHHHHT--CEE-EEEEEEEECC
T ss_pred cccCC--CCCcChhhHhhHH--HhhhhhHHHHHHHHHH--hCC-CCEEEEeChH
Confidence 55443 4789999843221 100 0112234444 666 8888876643
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.89 E-value=1e-08 Score=86.58 Aligned_cols=96 Identities=14% Similarity=0.131 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
++.+||||||| +|..+..|+.. +.+|+++|++ +.+++.|+++... + ++++|+.+. +...++||+|+..
T Consensus 54 ~~~~vLDiGcG-~G~~~~~l~~~----~~~v~gvD~s-~~~l~~a~~~~~~---~--~~~~d~~~~-~~~~~~fD~v~~~ 121 (260)
T 2avn_A 54 NPCRVLDLGGG-TGKWSLFLQER----GFEVVLVDPS-KEMLEVAREKGVK---N--VVEAKAEDL-PFPSGAFEAVLAL 121 (260)
T ss_dssp SCCEEEEETCT-TCHHHHHHHTT----TCEEEEEESC-HHHHHHHHHHTCS---C--EEECCTTSC-CSCTTCEEEEEEC
T ss_pred CCCeEEEeCCC-cCHHHHHHHHc----CCeEEEEeCC-HHHHHHHHhhcCC---C--EEECcHHHC-CCCCCCEEEEEEc
Confidence 67899999997 99999988864 6799999999 9999999988652 2 888998773 3224689999986
Q ss_pred CCC-C-CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 120 CNI-D-IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 120 ~~k-~-~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
... . ..+....++.+.+. |+| ||.+++.
T Consensus 122 ~~~~~~~~~~~~~l~~~~~~--Lkp-gG~l~~~ 151 (260)
T 2avn_A 122 GDVLSYVENKDKAFSEIRRV--LVP-DGLLIAT 151 (260)
T ss_dssp SSHHHHCSCHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred chhhhccccHHHHHHHHHHH--cCC-CeEEEEE
Confidence 532 0 03467889999998 886 8887764
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.4e-09 Score=93.80 Aligned_cols=115 Identities=13% Similarity=0.087 Sum_probs=84.2
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhh
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~ 108 (220)
.+++.......+..+|||+||| +|..++.|+...+ ..+|+++|.+ +.+++.|++++....-.++++.+|+.+..
T Consensus 185 ~~~ll~~l~~~~~~~VLDlGcG-~G~~~~~la~~~~--~~~v~~vD~s-~~~l~~a~~~~~~~~~~~~~~~~d~~~~~-- 258 (343)
T 2pjd_A 185 SQLLLSTLTPHTKGKVLDVGCG-AGVLSVAFARHSP--KIRLTLCDVS-APAVEASRATLAANGVEGEVFASNVFSEV-- 258 (343)
T ss_dssp HHHHHHHSCTTCCSBCCBTTCT-TSHHHHHHHHHCT--TCBCEEEESB-HHHHHHHHHHHHHTTCCCEEEECSTTTTC--
T ss_pred HHHHHHhcCcCCCCeEEEecCc-cCHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHHHHHHhCCCCEEEEccccccc--
Confidence 3444443334456789999997 9999999998754 4699999999 99999999999722123678999987754
Q ss_pred cCCCccEEEEcCCCCC------ccHHHHHHHHHhhcCCCCCCEE-EEEecCC
Q 042616 109 DYRGADFVLIDCNIDI------DGHKNVFRAAKESVMHGSGAGV-IVGYNAL 153 (220)
Q Consensus 109 ~~~~~D~VfiD~~k~~------~~y~~~l~~l~~~~~L~~~Ggv-iv~dNv~ 153 (220)
.++||+|+.+..-.. ......++.+.+. |+| ||. ++..|..
T Consensus 259 -~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~--Lkp-gG~l~i~~~~~ 306 (343)
T 2pjd_A 259 -KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRH--LNS-GGELRIVANAF 306 (343)
T ss_dssp -CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGG--EEE-EEEEEEEEETT
T ss_pred -cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHh--CCC-CcEEEEEEcCC
Confidence 468999999876521 2346778888998 887 555 4545544
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-09 Score=90.26 Aligned_cols=106 Identities=16% Similarity=0.110 Sum_probs=79.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCC-cEEEEEeCCchhHHHHHHHHhcccC-------------------------
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTG-GRVVCILSGVIGDIDASKKSLGRYA------------------------- 92 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~-grV~tIE~d~~~~~~~Ar~~l~g~~------------------------- 92 (220)
.++++|||+||| +|..++.++.. + .+|+++|.+ +.+++.|++++....
T Consensus 55 ~~~~~vLDlGcG-~G~~~~~l~~~----~~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (265)
T 2i62_A 55 VKGELLIDIGSG-PTIYQLLSACE----SFTEIIVSDYT-DQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEK 128 (265)
T ss_dssp CCEEEEEEESCT-TCCGGGTTGGG----TEEEEEEEESC-HHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHH
T ss_pred cCCCEEEEECCC-ccHHHHHHhhc----ccCeEEEecCC-HHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHH
Confidence 456889999997 89988877753 3 489999999 999999999886211
Q ss_pred -----CcE-EEEEcchhhhhhhcC---CCccEEEEcCCCC-----CccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 93 -----NCI-EFVKGDAQKLLMGDY---RGADFVLIDCNID-----IDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 93 -----~~V-e~v~gda~~~L~~~~---~~~D~VfiD~~k~-----~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+++ +++++|+.+..+... ++||+|+.-.... ..++...++.+.+. |+| ||.+++...+
T Consensus 129 ~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~--Lkp-gG~li~~~~~ 200 (265)
T 2i62_A 129 EEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSL--LKP-GGFLVMVDAL 200 (265)
T ss_dssp HHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTT--EEE-EEEEEEEEES
T ss_pred HHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhh--CCC-CcEEEEEecC
Confidence 138 999999987644223 6899999765430 12567888999988 886 8887776544
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.6e-08 Score=87.58 Aligned_cols=113 Identities=17% Similarity=0.094 Sum_probs=83.8
Q ss_pred CCCCChhhhHHHHHHHHhc------CCC-CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEE
Q 042616 1 MSSWSSENATKAYLQALKM------GKR-GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCI 73 (220)
Q Consensus 1 ~~~w~~e~a~~aY~~~l~~------~~~-~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tI 73 (220)
|..-..-..+.+.++.... +|. .+.+...+-+...+...+. +||||||| +|..|..|+.. +++|++|
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~k~~GQnfL~d~~i~~~Iv~~~~~~~~-~VLEIG~G-~G~lt~~L~~~----~~~V~av 74 (271)
T 3fut_A 1 MSKLASPQSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPG-LGALTRALLEA----GAEVTAI 74 (271)
T ss_dssp ----CCHHHHHHHHHHTTCCCSTTSSCCEECCHHHHHHHHHHHCCCCS-CEEEECCT-TSHHHHHHHHT----TCCEEEE
T ss_pred CccccCHHHHHHHHHhcCCCccccCCccccCCHHHHHHHHHhcCCCCC-eEEEEeCc-hHHHHHHHHHc----CCEEEEE
Confidence 3333333456667776432 444 4678888888887777777 99999997 99999999985 5799999
Q ss_pred eCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 74 LSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 74 E~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
|.| +.+++.+++++.+ +++++++||+.++-......+|.|+-..+-
T Consensus 75 Eid-~~~~~~l~~~~~~--~~v~vi~~D~l~~~~~~~~~~~~iv~NlPy 120 (271)
T 3fut_A 75 EKD-LRLRPVLEETLSG--LPVRLVFQDALLYPWEEVPQGSLLVANLPY 120 (271)
T ss_dssp ESC-GGGHHHHHHHTTT--SSEEEEESCGGGSCGGGSCTTEEEEEEECS
T ss_pred ECC-HHHHHHHHHhcCC--CCEEEEECChhhCChhhccCccEEEecCcc
Confidence 999 9999999999873 589999999988532212368888877665
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.6e-08 Score=87.55 Aligned_cols=104 Identities=15% Similarity=0.057 Sum_probs=81.8
Q ss_pred CCCC-CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEE
Q 042616 20 GKRG-KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIE 96 (220)
Q Consensus 20 ~~~~-~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve 96 (220)
++.+ ..+...+.+...+...+..+||||||| +|..|..|+.. +++|++||.| +.+++.+++++. +..++++
T Consensus 7 gq~fl~d~~i~~~i~~~~~~~~~~~VLDiG~G-~G~lt~~L~~~----~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~v~ 80 (285)
T 1zq9_A 7 GQHILKNPLIINSIIDKAALRPTDVVLEVGPG-TGNMTVKLLEK----AKKVVACELD-PRLVAELHKRVQGTPVASKLQ 80 (285)
T ss_dssp -CCEECCHHHHHHHHHHTCCCTTCEEEEECCT-TSTTHHHHHHH----SSEEEEEESC-HHHHHHHHHHHTTSTTGGGEE
T ss_pred CcCccCCHHHHHHHHHhcCCCCCCEEEEEcCc-ccHHHHHHHhh----CCEEEEEECC-HHHHHHHHHHHHhcCCCCceE
Confidence 4554 578888888777777788999999997 99999999986 5799999999 999999999986 4446899
Q ss_pred EEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHH
Q 042616 97 FVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAA 134 (220)
Q Consensus 97 ~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l 134 (220)
++++|+.+. + ...||.|+.+.+- ....+.+..+
T Consensus 81 ~~~~D~~~~-~--~~~fD~vv~nlpy--~~~~~~~~~~ 113 (285)
T 1zq9_A 81 VLVGDVLKT-D--LPFFDTCVANLPY--QISSPFVFKL 113 (285)
T ss_dssp EEESCTTTS-C--CCCCSEEEEECCG--GGHHHHHHHH
T ss_pred EEEcceecc-c--chhhcEEEEecCc--ccchHHHHHH
Confidence 999999874 2 2479999998776 4444444333
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-08 Score=90.43 Aligned_cols=105 Identities=20% Similarity=0.147 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+..+|||+||| +|..+..|++..+ +.+++.+|. +..++.|++++. ++.++|+++.+|..+.+| .+||+|
T Consensus 201 ~~~~~vlDvG~G-~G~~~~~l~~~~p--~~~~~~~D~--~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p---~~~D~v 272 (369)
T 3gwz_A 201 SGAATAVDIGGG-RGSLMAAVLDAFP--GLRGTLLER--PPVAEEARELLTGRGLADRCEILPGDFFETIP---DGADVY 272 (369)
T ss_dssp TTCSEEEEETCT-TSHHHHHHHHHCT--TCEEEEEEC--HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCC---SSCSEE
T ss_pred ccCcEEEEeCCC-ccHHHHHHHHHCC--CCeEEEEcC--HHHHHHHHHhhhhcCcCCceEEeccCCCCCCC---CCceEE
Confidence 457899999996 9999999998865 579999999 789999999886 667889999999985443 379999
Q ss_pred EEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 117 LIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 117 fiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|+-.-... .....+++.+.+. |+|.|-+++.+.+.
T Consensus 273 ~~~~vlh~~~d~~~~~~L~~~~~~--L~pgG~l~i~e~~~ 310 (369)
T 3gwz_A 273 LIKHVLHDWDDDDVVRILRRIATA--MKPDSRLLVIDNLI 310 (369)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHTT--CCTTCEEEEEEEBC
T ss_pred EhhhhhccCCHHHHHHHHHHHHHH--cCCCCEEEEEEecc
Confidence 98553311 2234689999998 88744445555444
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.2e-09 Score=98.24 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=65.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----ccCCcEEEEEcchhhhhhhc-CCCccE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RYANCIEFVKGDAQKLLMGD-YRGADF 115 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~~~~Ve~v~gda~~~L~~~-~~~~D~ 115 (220)
.++|||+||| +|+.+++||.. +++|++||.| +.+++.|++|++ ++ ++|+++++|+.++++.. ..+||+
T Consensus 94 g~~VLDLgcG-~G~~al~LA~~----g~~V~~VD~s-~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDv 166 (410)
T 3ll7_A 94 GTKVVDLTGG-LGIDFIALMSK----ASQGIYIERN-DETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDY 166 (410)
T ss_dssp TCEEEESSCS-SSHHHHHHHTT----CSEEEEEESC-HHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSE
T ss_pred CCEEEEeCCC-chHHHHHHHhc----CCEEEEEECC-HHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceE
Confidence 6899999997 99999988864 6799999999 999999999997 44 68999999999987643 258999
Q ss_pred EEEcCCC
Q 042616 116 VLIDCNI 122 (220)
Q Consensus 116 VfiD~~k 122 (220)
||+|.+.
T Consensus 167 V~lDPPr 173 (410)
T 3ll7_A 167 IYVDPAR 173 (410)
T ss_dssp EEECCEE
T ss_pred EEECCCC
Confidence 9999876
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.87 E-value=8.4e-09 Score=88.51 Aligned_cols=95 Identities=12% Similarity=0.020 Sum_probs=76.0
Q ss_pred CCC-CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEE
Q 042616 20 GKR-GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFV 98 (220)
Q Consensus 20 ~~~-~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v 98 (220)
+|. .+.+...+.+...+...+..+||||||| +|+.|..|+.. +++|++||.| +.+++.+++++... ++++++
T Consensus 8 GQnFL~d~~i~~~iv~~~~~~~~~~VLEIG~G-~G~lt~~La~~----~~~V~avEid-~~~~~~~~~~~~~~-~~v~~i 80 (255)
T 3tqs_A 8 GQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPG-RGALTDYLLTE----CDNLALVEID-RDLVAFLQKKYNQQ-KNITIY 80 (255)
T ss_dssp -CCEECCHHHHHHHHHHHCCCTTCEEEEECCT-TTTTHHHHTTT----SSEEEEEECC-HHHHHHHHHHHTTC-TTEEEE
T ss_pred CcccccCHHHHHHHHHhcCCCCcCEEEEEccc-ccHHHHHHHHh----CCEEEEEECC-HHHHHHHHHHHhhC-CCcEEE
Confidence 554 4678888888888888888999999997 99999999874 5799999999 99999999998753 689999
Q ss_pred Ecchhhh-hhhc--CCCccEEEEcCCC
Q 042616 99 KGDAQKL-LMGD--YRGADFVLIDCNI 122 (220)
Q Consensus 99 ~gda~~~-L~~~--~~~~D~VfiD~~k 122 (220)
++|+.++ ++.+ ..+|| |+-+.+-
T Consensus 81 ~~D~~~~~~~~~~~~~~~~-vv~NlPY 106 (255)
T 3tqs_A 81 QNDALQFDFSSVKTDKPLR-VVGNLPY 106 (255)
T ss_dssp ESCTTTCCGGGSCCSSCEE-EEEECCH
T ss_pred EcchHhCCHHHhccCCCeE-EEecCCc
Confidence 9999886 3443 24688 6655543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.7e-08 Score=86.26 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=78.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcc--------cCCcEEEEEcchhhhh-----
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGR--------YANCIEFVKGDAQKLL----- 106 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g--------~~~~Ve~v~gda~~~L----- 106 (220)
++.+|||+||| +|..+..|+.. . +.+++++|++ +.+++.|++++.. ...+++++++|+.+..
T Consensus 34 ~~~~VLDlGcG-~G~~~~~l~~~--~-~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 108 (313)
T 3bgv_A 34 RDITVLDLGCG-KGGDLLKWKKG--R-INKLVCTDIA-DVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKF 108 (313)
T ss_dssp -CCEEEEETCT-TTTTHHHHHHT--T-CSEEEEEESC-HHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTC
T ss_pred CCCEEEEECCC-CcHHHHHHHhc--C-CCEEEEEeCC-HHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhc
Confidence 67899999997 99999988863 2 6799999999 9999999998762 2347999999998752
Q ss_pred hhcCCCccEEEEcCCCCC-----ccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 107 MGDYRGADFVLIDCNIDI-----DGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~k~~-----~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+...++||+|+....... .+....++.+.+. |+| ||++++..
T Consensus 109 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~--Lkp-gG~li~~~ 155 (313)
T 3bgv_A 109 RDPQMCFDICSCQFVCHYSFESYEQADMMLRNACER--LSP-GGYFIGTT 155 (313)
T ss_dssp SSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTT--EEE-EEEEEEEE
T ss_pred ccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHH--hCC-CcEEEEec
Confidence 111248999997654310 2335788999988 876 88887753
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.86 E-value=8.6e-09 Score=87.04 Aligned_cols=109 Identities=12% Similarity=0.019 Sum_probs=78.9
Q ss_pred CChhHHHHHHHHHhh--CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc
Q 042616 24 KEPDVGEFISALAAG--NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD 101 (220)
Q Consensus 24 ~~p~~~~~L~~La~~--~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd 101 (220)
..|-...+...+... .+..+||||||| +|..+..|+...+ +.+|+++|++ +.+++.|+++. .+++++.+|
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~--~~~v~~vD~s-~~~~~~a~~~~----~~~~~~~~d 138 (269)
T 1p91_A 67 YQPLRDAIVAQLRERLDDKATAVLDIGCG-EGYYTHAFADALP--EITTFGLDVS-KVAIKAAAKRY----PQVTFCVAS 138 (269)
T ss_dssp THHHHHHHHHHHHHHSCTTCCEEEEETCT-TSTTHHHHHHTCT--TSEEEEEESC-HHHHHHHHHHC----TTSEEEECC
T ss_pred cHHHHHHHHHHHHHhcCCCCCEEEEECCC-CCHHHHHHHHhCC--CCeEEEEeCC-HHHHHHHHHhC----CCcEEEEcc
Confidence 334334444444443 467899999997 8999999998763 6799999999 99999999875 468999999
Q ss_pred hhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.+. +...++||+|+.-... . .++.+.+. |+| ||.+++-
T Consensus 139 ~~~~-~~~~~~fD~v~~~~~~--~----~l~~~~~~--L~p-gG~l~~~ 177 (269)
T 1p91_A 139 SHRL-PFSDTSMDAIIRIYAP--C----KAEELARV--VKP-GGWVITA 177 (269)
T ss_dssp TTSC-SBCTTCEEEEEEESCC--C----CHHHHHHH--EEE-EEEEEEE
T ss_pred hhhC-CCCCCceeEEEEeCCh--h----hHHHHHHh--cCC-CcEEEEE
Confidence 8763 3324689999975544 3 35677777 776 6665543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=89.56 Aligned_cols=104 Identities=17% Similarity=0.088 Sum_probs=79.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
+..+||||||| +|..+..|++..+ +.+++.+|. +..++.|++++. ++.++|+++.+|..+.+| .+||+|+
T Consensus 169 ~~~~vlDvG~G-~G~~~~~l~~~~p--~~~~~~~D~--~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p---~~~D~v~ 240 (332)
T 3i53_A 169 ALGHVVDVGGG-SGGLLSALLTAHE--DLSGTVLDL--QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLP---AGAGGYV 240 (332)
T ss_dssp GGSEEEEETCT-TSHHHHHHHHHCT--TCEEEEEEC--HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC---CSCSEEE
T ss_pred CCCEEEEeCCC-hhHHHHHHHHHCC--CCeEEEecC--HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCC---CCCcEEE
Confidence 35899999996 9999999998875 579999998 789999999886 667889999999975443 2799999
Q ss_pred EcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 118 IDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 118 iD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+-.--.. .....+++.+.+. |+|.|-+++.+.+.
T Consensus 241 ~~~vlh~~~~~~~~~~l~~~~~~--L~pgG~l~i~e~~~ 277 (332)
T 3i53_A 241 LSAVLHDWDDLSAVAILRRCAEA--AGSGGVVLVIEAVA 277 (332)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHH--HTTTCEEEEEECCC
T ss_pred EehhhccCCHHHHHHHHHHHHHh--cCCCCEEEEEeecC
Confidence 7443210 3347789999998 88744444555443
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-08 Score=89.49 Aligned_cols=105 Identities=11% Similarity=0.051 Sum_probs=80.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
+.+||||||| +|..+..|+...+ +.+++.+|. +..++.|++++. ++.++|+++.+|..+..+....+||+|++
T Consensus 180 ~~~vlDvG~G-~G~~~~~l~~~~p--~~~~~~~D~--~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~ 254 (352)
T 3mcz_A 180 ARTVIDLAGG-HGTYLAQVLRRHP--QLTGQIWDL--PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVML 254 (352)
T ss_dssp CCEEEEETCT-TCHHHHHHHHHCT--TCEEEEEEC--GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEE
T ss_pred CCEEEEeCCC-cCHHHHHHHHhCC--CCeEEEEEC--HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEE
Confidence 7899999996 9999999998765 489999999 468999999886 66678999999998753212457999998
Q ss_pred cCCCCC---ccHHHHHHHHHhhcCCCCCCEEE-EEecCC
Q 042616 119 DCNIDI---DGHKNVFRAAKESVMHGSGAGVI-VGYNAL 153 (220)
Q Consensus 119 D~~k~~---~~y~~~l~~l~~~~~L~~~Ggvi-v~dNv~ 153 (220)
-.-.+. .+...+++.+.+. |+| ||.+ +.+.+.
T Consensus 255 ~~vlh~~~~~~~~~~l~~~~~~--L~p-gG~l~i~e~~~ 290 (352)
T 3mcz_A 255 NDCLHYFDAREAREVIGHAAGL--VKP-GGALLILTMTM 290 (352)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHT--EEE-EEEEEEEEECC
T ss_pred ecccccCCHHHHHHHHHHHHHH--cCC-CCEEEEEEecc
Confidence 543310 2346789999998 887 6655 444443
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.84 E-value=7e-09 Score=90.53 Aligned_cols=100 Identities=20% Similarity=0.197 Sum_probs=76.0
Q ss_pred CCCC-CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEE
Q 042616 20 GKRG-KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIE 96 (220)
Q Consensus 20 ~~~~-~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve 96 (220)
++.+ +.+...+.+...+...+..+||||||| +|..|..|+.. +++|++||.| +.+++.|++++. ++ ++++
T Consensus 21 Gq~fl~~~~i~~~i~~~~~~~~~~~VLDiG~G-~G~lt~~La~~----~~~v~~vDi~-~~~~~~a~~~~~~~~~-~~v~ 93 (299)
T 2h1r_A 21 GQHLLKNPGILDKIIYAAKIKSSDIVLEIGCG-TGNLTVKLLPL----AKKVITIDID-SRMISEVKKRCLYEGY-NNLE 93 (299)
T ss_dssp --CEECCHHHHHHHHHHHCCCTTCEEEEECCT-TSTTHHHHTTT----SSEEEEECSC-HHHHHHHHHHHHHTTC-CCEE
T ss_pred ccceecCHHHHHHHHHhcCCCCcCEEEEEcCc-CcHHHHHHHhc----CCEEEEEECC-HHHHHHHHHHHHHcCC-CceE
Confidence 4544 578888888888777788999999997 99999988863 6799999999 999999999986 55 6899
Q ss_pred EEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHH
Q 042616 97 FVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVF 131 (220)
Q Consensus 97 ~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l 131 (220)
++++|+.+.. ...||+|+.|.+. ......+
T Consensus 94 ~~~~D~~~~~---~~~~D~Vv~n~py--~~~~~~~ 123 (299)
T 2h1r_A 94 VYEGDAIKTV---FPKFDVCTANIPY--KISSPLI 123 (299)
T ss_dssp C----CCSSC---CCCCSEEEEECCG--GGHHHHH
T ss_pred EEECchhhCC---cccCCEEEEcCCc--ccccHHH
Confidence 9999998743 3589999999876 4444443
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.1e-08 Score=87.27 Aligned_cols=105 Identities=14% Similarity=0.069 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+..+|||+||| +|..+..|+...+ +.+++++|.+ ..++.|++++. ++.++|+++.+|..+. + ....||+|
T Consensus 164 ~~~~~vlDvG~G-~G~~~~~l~~~~p--~~~~~~~D~~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~D~v 236 (335)
T 2r3s_A 164 IEPLKVLDISAS-HGLFGIAVAQHNP--NAEIFGVDWA--SVLEVAKENARIQGVASRYHTIAGSAFEV-D-YGNDYDLV 236 (335)
T ss_dssp CCCSEEEEETCT-TCHHHHHHHHHCT--TCEEEEEECH--HHHHHHHHHHHHHTCGGGEEEEESCTTTS-C-CCSCEEEE
T ss_pred CCCCEEEEECCC-cCHHHHHHHHHCC--CCeEEEEecH--HHHHHHHHHHHhcCCCcceEEEecccccC-C-CCCCCcEE
Confidence 567899999996 9999999998764 5799999997 88999999886 6667899999998763 2 23459999
Q ss_pred EEcCCCCC---ccHHHHHHHHHhhcCCCCCCE-EEEEecCC
Q 042616 117 LIDCNIDI---DGHKNVFRAAKESVMHGSGAG-VIVGYNAL 153 (220)
Q Consensus 117 fiD~~k~~---~~y~~~l~~l~~~~~L~~~Gg-viv~dNv~ 153 (220)
++-..... .+...+++.+.+. |+| || +++.+...
T Consensus 237 ~~~~~l~~~~~~~~~~~l~~~~~~--L~p-gG~l~i~e~~~ 274 (335)
T 2r3s_A 237 LLPNFLHHFDVATCEQLLRKIKTA--LAV-EGKVIVFDFIP 274 (335)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHH--EEE-EEEEEEEECCC
T ss_pred EEcchhccCCHHHHHHHHHHHHHh--CCC-CcEEEEEeecC
Confidence 98433211 3446889999998 876 77 55555443
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-08 Score=89.72 Aligned_cols=89 Identities=16% Similarity=0.207 Sum_probs=71.2
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh---
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--- 105 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--- 105 (220)
.+.+..| ...+..+|||+||| +|..|+.|+...+ +++|++||.| +++++.|+++++...++++++++|+.++
T Consensus 16 ~e~l~~L-~~~~g~~vLD~g~G-~G~~s~~la~~~~--~~~VigvD~d-~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~ 90 (301)
T 1m6y_A 16 REVIEFL-KPEDEKIILDCTVG-EGGHSRAILEHCP--GCRIIGIDVD-SEVLRIAEEKLKEFSDRVSLFKVSYREADFL 90 (301)
T ss_dssp HHHHHHH-CCCTTCEEEETTCT-TSHHHHHHHHHCT--TCEEEEEESC-HHHHHHHHHHTGGGTTTEEEEECCGGGHHHH
T ss_pred HHHHHhc-CCCCCCEEEEEeCC-cCHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHHHHHhcCCcEEEEECCHHHHHHH
Confidence 3444443 45567899999997 9999999998764 6899999999 9999999999973336899999998775
Q ss_pred hhhcC-CCccEEEEcCCC
Q 042616 106 LMGDY-RGADFVLIDCNI 122 (220)
Q Consensus 106 L~~~~-~~~D~VfiD~~k 122 (220)
++... .+||.|++|.+.
T Consensus 91 l~~~g~~~~D~Vl~D~gv 108 (301)
T 1m6y_A 91 LKTLGIEKVDGILMDLGV 108 (301)
T ss_dssp HHHTTCSCEEEEEEECSC
T ss_pred HHhcCCCCCCEEEEcCcc
Confidence 22211 579999999976
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.3e-08 Score=83.67 Aligned_cols=105 Identities=12% Similarity=-0.023 Sum_probs=77.1
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA 102 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda 102 (220)
.+.+...+.+...+...+..+||||||| +|..|..|+.. +++|++||.| +.+++.++++++.. ++++++++|+
T Consensus 13 l~d~~~~~~i~~~~~~~~~~~VLDiG~G-~G~lt~~l~~~----~~~v~~vD~~-~~~~~~a~~~~~~~-~~v~~~~~D~ 85 (244)
T 1qam_A 13 ITSKHNIDKIMTNIRLNEHDNIFEIGSG-KGHFTLELVQR----CNFVTAIEID-HKLCKTTENKLVDH-DNFQVLNKDI 85 (244)
T ss_dssp CCCHHHHHHHHTTCCCCTTCEEEEECCT-TSHHHHHHHHH----SSEEEEECSC-HHHHHHHHHHTTTC-CSEEEECCCG
T ss_pred cCCHHHHHHHHHhCCCCCCCEEEEEeCC-chHHHHHHHHc----CCeEEEEECC-HHHHHHHHHhhccC-CCeEEEEChH
Confidence 4567777777666666678899999997 99999999986 4799999999 99999999998754 6899999999
Q ss_pred hhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 103 QKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
.+.-......| .|+.+.+- ......+..+...
T Consensus 86 ~~~~~~~~~~~-~vv~nlPy--~~~~~~l~~~l~~ 117 (244)
T 1qam_A 86 LQFKFPKNQSY-KIFGNIPY--NISTDIIRKIVFD 117 (244)
T ss_dssp GGCCCCSSCCC-EEEEECCG--GGHHHHHHHHHHS
T ss_pred HhCCcccCCCe-EEEEeCCc--ccCHHHHHHHHhc
Confidence 88531111234 46666654 3334455555443
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.6e-08 Score=89.38 Aligned_cols=120 Identities=9% Similarity=0.014 Sum_probs=88.5
Q ss_pred CCCCChhHHHHHHHHHh----hCCCCEEEEEcCCchHHHHHHHHHHcCCC---CcEEEEEeCCchhHHHHHHHHhc--cc
Q 042616 21 KRGKEPDVGEFISALAA----GNNAQLIVMACSSIAVSRTLALVAAARQT---GGRVVCILSGVIGDIDASKKSLG--RY 91 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~----~~~a~~ILEIGtg~~G~sTl~LA~A~~~~---~grV~tIE~d~~~~~~~Ar~~l~--g~ 91 (220)
+...++.+..++..++. ..+..+|||+||| +|..++.++..++.. ..+++++|.+ +..++.|+.++. ++
T Consensus 107 ~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cG-sG~~l~~~~~~~~~~~~~~~~v~GiDi~-~~~~~~a~~n~~~~g~ 184 (344)
T 2f8l_A 107 HQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACG-TANLLTTVINQLELKGDVDVHASGVDVD-DLLISLALVGADLQRQ 184 (344)
T ss_dssp GCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCT-TSHHHHHHHHHHHTTSSCEEEEEEEESC-HHHHHHHHHHHHHHTC
T ss_pred cCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCC-ccHHHHHHHHHHHHhcCCCceEEEEECC-HHHHHHHHHHHHhCCC
Confidence 34566666777666653 3356799999997 999999998887641 2789999999 999999999986 55
Q ss_pred CCcEEEEEcchhhhhhhcCCCccEEEEcCCCCC------------------ccH-HHHHHHHHhhcCCCCCCEEEEE
Q 042616 92 ANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDI------------------DGH-KNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 92 ~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~------------------~~y-~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+++++++|+.+..+ ..+||+|+.+.+-.. .++ ..+++.+.+. |+| ||.+++
T Consensus 185 --~~~i~~~D~l~~~~--~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~--Lk~-gG~~~~ 254 (344)
T 2f8l_A 185 --KMTLLHQDGLANLL--VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRY--TKP-GGYLFF 254 (344)
T ss_dssp --CCEEEESCTTSCCC--CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHT--EEE-EEEEEE
T ss_pred --CceEEECCCCCccc--cCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHH--hCC-CCEEEE
Confidence 68999999876432 368999999987200 011 3578888888 876 776443
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-08 Score=89.22 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+..+||||||| +|..+..|+...+ +.+++++|. +.+++.|++++. ++.++|+++.+|..+.+| ..||+|
T Consensus 181 ~~~~~vlDvG~G-~G~~~~~l~~~~~--~~~~~~~D~--~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~D~v 252 (374)
T 1qzz_A 181 SAVRHVLDVGGG-NGGMLAAIALRAP--HLRGTLVEL--AGPAERARRRFADAGLADRVTVAEGDFFKPLP---VTADVV 252 (374)
T ss_dssp TTCCEEEEETCT-TSHHHHHHHHHCT--TCEEEEEEC--HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS---CCEEEE
T ss_pred CCCCEEEEECCC-cCHHHHHHHHHCC--CCEEEEEeC--HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCC---CCCCEE
Confidence 457899999996 9999999998864 579999999 689999999986 666789999999977554 349999
Q ss_pred EEcCCCCC---ccHHHHHHHHHhhcCCCCCCEE-EEEec
Q 042616 117 LIDCNIDI---DGHKNVFRAAKESVMHGSGAGV-IVGYN 151 (220)
Q Consensus 117 fiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggv-iv~dN 151 (220)
++..-... .....+++.+.+. |+| ||. ++.+.
T Consensus 253 ~~~~vl~~~~~~~~~~~l~~~~~~--L~p-gG~l~i~e~ 288 (374)
T 1qzz_A 253 LLSFVLLNWSDEDALTILRGCVRA--LEP-GGRLLVLDR 288 (374)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHH--EEE-EEEEEEEEC
T ss_pred EEeccccCCCHHHHHHHHHHHHHh--cCC-CcEEEEEec
Confidence 98654311 2224789999998 887 775 45554
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.9e-08 Score=85.83 Aligned_cols=102 Identities=17% Similarity=0.187 Sum_probs=78.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
.+|||+||| +|..+..|+...+ +.+++++|. +..++.|++++. ++.++|+++.+|..+.+ ..+||+|++.
T Consensus 169 ~~vlDvG~G-~G~~~~~l~~~~p--~~~~~~~D~--~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~D~v~~~ 240 (334)
T 2ip2_A 169 RSFVDVGGG-SGELTKAILQAEP--SARGVMLDR--EGSLGVARDNLSSLLAGERVSLVGGDMLQEV---PSNGDIYLLS 240 (334)
T ss_dssp CEEEEETCT-TCHHHHHHHHHCT--TCEEEEEEC--TTCTHHHHHHTHHHHHTTSEEEEESCTTTCC---CSSCSEEEEE
T ss_pred CEEEEeCCC-chHHHHHHHHHCC--CCEEEEeCc--HHHHHHHHHHHhhcCCCCcEEEecCCCCCCC---CCCCCEEEEc
Confidence 899999996 9999999998864 579999999 688999999886 66678999999997743 3579999986
Q ss_pred CCCC---CccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 120 CNID---IDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 120 ~~k~---~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.-.. ......+++.+.+. |+|.|-+++.+.+.
T Consensus 241 ~vl~~~~~~~~~~~l~~~~~~--L~pgG~l~i~e~~~ 275 (334)
T 2ip2_A 241 RIIGDLDEAASLRLLGNCREA--MAGDGRVVVIERTI 275 (334)
T ss_dssp SCGGGCCHHHHHHHHHHHHHH--SCTTCEEEEEECCB
T ss_pred hhccCCCHHHHHHHHHHHHHh--cCCCCEEEEEEecc
Confidence 5441 02334789999998 88744445555443
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.6e-08 Score=87.90 Aligned_cols=103 Identities=15% Similarity=0.184 Sum_probs=79.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+..+||||||| +|..+..|+...+ +.+++.+|. +.+++.|++++. ++.++|+++.+|..+.+| ..||+|
T Consensus 182 ~~~~~vLDvG~G-~G~~~~~l~~~~~--~~~~~~~D~--~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~D~v 253 (360)
T 1tw3_A 182 TNVRHVLDVGGG-KGGFAAAIARRAP--HVSATVLEM--AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP---RKADAI 253 (360)
T ss_dssp TTCSEEEEETCT-TSHHHHHHHHHCT--TCEEEEEEC--TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS---SCEEEE
T ss_pred ccCcEEEEeCCc-CcHHHHHHHHhCC--CCEEEEecC--HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC---CCccEE
Confidence 457899999996 9999999998764 478999998 578999999986 666789999999977554 359999
Q ss_pred EEcCCCCC---ccHHHHHHHHHhhcCCCCCCEE-EEEecC
Q 042616 117 LIDCNIDI---DGHKNVFRAAKESVMHGSGAGV-IVGYNA 152 (220)
Q Consensus 117 fiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggv-iv~dNv 152 (220)
++..-... .+...+++.+.+. |+| ||. ++.+.+
T Consensus 254 ~~~~vl~~~~~~~~~~~l~~~~~~--L~p-gG~l~i~e~~ 290 (360)
T 1tw3_A 254 ILSFVLLNWPDHDAVRILTRCAEA--LEP-GGRILIHERD 290 (360)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHT--EEE-EEEEEEEECC
T ss_pred EEcccccCCCHHHHHHHHHHHHHh--cCC-CcEEEEEEEe
Confidence 98654310 2235789999998 887 665 555555
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.9e-08 Score=85.86 Aligned_cols=104 Identities=14% Similarity=0.027 Sum_probs=80.1
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
..+..+||||||| +|..+..|+...+ +.+++++|. +..++.|+++++ ++.++|+++.+|+.+. + ...+|+
T Consensus 188 ~~~~~~vLDvG~G-~G~~~~~l~~~~p--~~~~~~~D~--~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~~~~D~ 259 (359)
T 1x19_A 188 LDGVKKMIDVGGG-IGDISAAMLKHFP--ELDSTILNL--PGAIDLVNENAAEKGVADRMRGIAVDIYKE-S--YPEADA 259 (359)
T ss_dssp CTTCCEEEEESCT-TCHHHHHHHHHCT--TCEEEEEEC--GGGHHHHHHHHHHTTCTTTEEEEECCTTTS-C--CCCCSE
T ss_pred CCCCCEEEEECCc-ccHHHHHHHHHCC--CCeEEEEec--HHHHHHHHHHHHhcCCCCCEEEEeCccccC-C--CCCCCE
Confidence 3557899999996 9999999998864 579999999 688999999987 6667799999999874 2 234599
Q ss_pred EEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEE-EEecC
Q 042616 116 VLIDCNIDI---DGHKNVFRAAKESVMHGSGAGVI-VGYNA 152 (220)
Q Consensus 116 VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggvi-v~dNv 152 (220)
|++..-... .....+++.+.+. |+| ||.+ +.+.+
T Consensus 260 v~~~~vlh~~~d~~~~~~l~~~~~~--L~p-gG~l~i~e~~ 297 (359)
T 1x19_A 260 VLFCRILYSANEQLSTIMCKKAFDA--MRS-GGRLLILDMV 297 (359)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHTT--CCT-TCEEEEEEEC
T ss_pred EEEechhccCCHHHHHHHHHHHHHh--cCC-CCEEEEEecc
Confidence 998654411 2257789999998 887 6655 66543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-08 Score=81.79 Aligned_cols=104 Identities=14% Similarity=0.056 Sum_probs=78.3
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhh
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~ 108 (220)
.+.+..+....++.+|||+||| +|..+..|+.. +++|.+ +.+++.|+++ +++++++|+.+. +.
T Consensus 36 ~~~~~~l~~~~~~~~vLDiG~G-~G~~~~~l~~~--------~~vD~s-~~~~~~a~~~------~~~~~~~d~~~~-~~ 98 (219)
T 1vlm_A 36 LSELQAVKCLLPEGRGVEIGVG-TGRFAVPLKIK--------IGVEPS-ERMAEIARKR------GVFVLKGTAENL-PL 98 (219)
T ss_dssp HHHHHHHHHHCCSSCEEEETCT-TSTTHHHHTCC--------EEEESC-HHHHHHHHHT------TCEEEECBTTBC-CS
T ss_pred HHHHHHHHHhCCCCcEEEeCCC-CCHHHHHHHHH--------hccCCC-HHHHHHHHhc------CCEEEEcccccC-CC
Confidence 3444555555668899999997 89988877641 999999 9999999886 588999998763 33
Q ss_pred cCCCccEEEEcCCCC-CccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 109 DYRGADFVLIDCNID-IDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 109 ~~~~~D~VfiD~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
..+.||+|+...... ..+...+++.+.+. |+| ||.+++...
T Consensus 99 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~--L~p-gG~l~i~~~ 140 (219)
T 1vlm_A 99 KDESFDFALMVTTICFVDDPERALKEAYRI--LKK-GGYLIVGIV 140 (219)
T ss_dssp CTTCEEEEEEESCGGGSSCHHHHHHHHHHH--EEE-EEEEEEEEE
T ss_pred CCCCeeEEEEcchHhhccCHHHHHHHHHHH--cCC-CcEEEEEEe
Confidence 246899999876531 14567889999998 876 887776533
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.1e-08 Score=81.60 Aligned_cols=97 Identities=19% Similarity=0.128 Sum_probs=75.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh-hhhcCCCccEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL-LMGDYRGADFVL 117 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~-L~~~~~~~D~Vf 117 (220)
.++.+|||+||| +|..+..|+.. +.+++++|++ +.+++.|++++ .+++++|+.+. ++...++||+|+
T Consensus 31 ~~~~~vLdiG~G-~G~~~~~l~~~----~~~~~~~D~~-~~~~~~~~~~~------~~~~~~d~~~~~~~~~~~~fD~v~ 98 (230)
T 3cc8_A 31 KEWKEVLDIGCS-SGALGAAIKEN----GTRVSGIEAF-PEAAEQAKEKL------DHVVLGDIETMDMPYEEEQFDCVI 98 (230)
T ss_dssp TTCSEEEEETCT-TSHHHHHHHTT----TCEEEEEESS-HHHHHHHHTTS------SEEEESCTTTCCCCSCTTCEEEEE
T ss_pred cCCCcEEEeCCC-CCHHHHHHHhc----CCeEEEEeCC-HHHHHHHHHhC------CcEEEcchhhcCCCCCCCccCEEE
Confidence 577899999997 99999988864 4799999999 99999988765 36888998764 322236899999
Q ss_pred EcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 118 IDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 118 iD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..... ...+....++.+.+. |+| ||.+++.
T Consensus 99 ~~~~l~~~~~~~~~l~~~~~~--L~~-gG~l~~~ 129 (230)
T 3cc8_A 99 FGDVLEHLFDPWAVIEKVKPY--IKQ-NGVILAS 129 (230)
T ss_dssp EESCGGGSSCHHHHHHHTGGG--EEE-EEEEEEE
T ss_pred ECChhhhcCCHHHHHHHHHHH--cCC-CCEEEEE
Confidence 86543 113557889999998 876 8877764
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.74 E-value=2.4e-08 Score=85.45 Aligned_cols=105 Identities=8% Similarity=-0.051 Sum_probs=73.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcc----------------cC-----------
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGR----------------YA----------- 92 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g----------------~~----------- 92 (220)
++.+||||||| +|..++.++. .. +.+|++||++ +.+++.|++.++. +.
T Consensus 71 ~~~~vLDiGcG-~G~~~~l~~~--~~-~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 145 (289)
T 2g72_A 71 SGRTLIDIGSG-PTVYQLLSAC--SH-FEDITMTDFL-EVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER 145 (289)
T ss_dssp CCSEEEEETCT-TCCGGGTTGG--GG-CSEEEEECSC-HHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred CCCeEEEECCC-cChHHHHhhc--cC-CCeEEEeCCC-HHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHH
Confidence 67899999997 8984433332 22 5799999999 9999999886531 00
Q ss_pred ----CcEEEEEcchhhhhhh----c-CCCccEEEEcCCCC-----CccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 93 ----NCIEFVKGDAQKLLMG----D-YRGADFVLIDCNID-----IDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 93 ----~~Ve~v~gda~~~L~~----~-~~~~D~VfiD~~k~-----~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
..++++.+|+.+.+|. . .++||+|+.-.... ..++...++.+.+. |+| ||.+++...
T Consensus 146 ~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~--Lkp-GG~l~~~~~ 216 (289)
T 2g72_A 146 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTL--LRP-GGHLLLIGA 216 (289)
T ss_dssp HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTT--EEE-EEEEEEEEE
T ss_pred HHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHh--cCC-CCEEEEEEe
Confidence 0267888898875441 1 24599999765430 02567889999998 887 888777543
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.5e-08 Score=84.84 Aligned_cols=106 Identities=9% Similarity=0.099 Sum_probs=74.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCC--CCcEE--EEEeCCchhHHHHHHHHhc---ccCCcE--EEEEcchhhhhh--
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQ--TGGRV--VCILSGVIGDIDASKKSLG---RYANCI--EFVKGDAQKLLM-- 107 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~--~~grV--~tIE~d~~~~~~~Ar~~l~---g~~~~V--e~v~gda~~~L~-- 107 (220)
.++.+||||||| +|..|..++..+.. .+.+| ++||++ +++++.|++.++ ++ .++ ++..++++++.+
T Consensus 51 ~~~~~VLDiG~G-tG~~~~~~l~~l~~~~~~~~v~~~~vD~S-~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~ 127 (292)
T 2aot_A 51 KSEIKILSIGGG-AGEIDLQILSKVQAQYPGVCINNEVVEPS-AEQIAKYKELVAKTSNL-ENVKFAWHKETSSEYQSRM 127 (292)
T ss_dssp CSEEEEEEETCT-TSHHHHHHHHHHHHHSTTCEEEEEEECSC-HHHHHHHHHHHHTCSSC-TTEEEEEECSCHHHHHHHH
T ss_pred CCCCeEEEEcCC-CCHHHHHHHHHHHhhCCCceeeEEEEeCC-HHHHHHHHHHHHhccCC-CcceEEEEecchhhhhhhh
Confidence 345789999997 99887654433211 14555 999999 999999999875 33 344 556778876542
Q ss_pred ---hcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 108 ---GDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 108 ---~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
...++||+|+.-.-- .-.+....++.+.+. |+| ||.+++-
T Consensus 128 ~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~--Lkp-gG~l~i~ 171 (292)
T 2aot_A 128 LEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSL--LGT-NAKMLII 171 (292)
T ss_dssp HTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHT--EEE-EEEEEEE
T ss_pred ccccCCCceeEEEEeeeeeecCCHHHHHHHHHHH--cCC-CcEEEEE
Confidence 124689999976433 114678889999998 887 7776653
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.72 E-value=5e-08 Score=78.53 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=68.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhh------------
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLL------------ 106 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L------------ 106 (220)
.+..+|||+||| +|..|+.|+...++.+++|+++|.+ +.. .. .+++++++|+.+..
T Consensus 21 ~~~~~vLDlGcG-~G~~~~~l~~~~~~~~~~v~gvD~s-~~~---------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~ 88 (201)
T 2plw_A 21 KKNKIILDIGCY-PGSWCQVILERTKNYKNKIIGIDKK-IMD---------PI-PNVYFIQGEIGKDNMNNIKNINYIDN 88 (201)
T ss_dssp CTTEEEEEESCT-TCHHHHHHHHHTTTSCEEEEEEESS-CCC---------CC-TTCEEEECCTTTTSSCCC--------
T ss_pred CCCCEEEEeCCC-CCHHHHHHHHHcCCCCceEEEEeCC-ccC---------CC-CCceEEEccccchhhhhhcccccccc
Confidence 456799999997 9999999998765225899999999 631 12 46899999987642
Q ss_pred -----------hhc-CCCccEEEEcCCCCCc-----cH-------HHHHHHHHhhcCCCCCCEEEEEe
Q 042616 107 -----------MGD-YRGADFVLIDCNIDID-----GH-------KNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 107 -----------~~~-~~~~D~VfiD~~k~~~-----~y-------~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..+ ..+||+|+.|...... +. ...++.+.+. |+| ||.+++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~--Lkp-gG~lv~~ 153 (201)
T 2plw_A 89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQY--INI-GGTYIVK 153 (201)
T ss_dssp ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHH--ccC-CCEEEEE
Confidence 001 3589999998754110 11 1256778887 876 8888774
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=3.4e-08 Score=88.65 Aligned_cols=89 Identities=17% Similarity=0.100 Sum_probs=70.6
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK 99 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~ 99 (220)
++...++..++++..++...+..+|||+||| +|..++.+++.... ..+++++|.+ +.+++.| .++++++
T Consensus 19 g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcG-tG~~~~~~~~~~~~-~~~i~gvDi~-~~~~~~a--------~~~~~~~ 87 (421)
T 2ih2_A 19 GRVETPPEVVDFMVSLAEAPRGGRVLEPACA-HGPFLRAFREAHGT-AYRFVGVEID-PKALDLP--------PWAEGIL 87 (421)
T ss_dssp --CCCCHHHHHHHHHHCCCCTTCEEEEETCT-TCHHHHHHHHHHCS-CSEEEEEESC-TTTCCCC--------TTEEEEE
T ss_pred ceEeCCHHHHHHHHHhhccCCCCEEEECCCC-ChHHHHHHHHHhCC-CCeEEEEECC-HHHHHhC--------CCCcEEe
Confidence 5667778888888888765567799999997 99999999876533 5799999999 8887665 4799999
Q ss_pred cchhhhhhhcCCCccEEEEcCC
Q 042616 100 GDAQKLLMGDYRGADFVLIDCN 121 (220)
Q Consensus 100 gda~~~L~~~~~~~D~VfiD~~ 121 (220)
+|+.+..+ .+.||+|+.+.+
T Consensus 88 ~D~~~~~~--~~~fD~Ii~NPP 107 (421)
T 2ih2_A 88 ADFLLWEP--GEAFDLILGNPP 107 (421)
T ss_dssp SCGGGCCC--SSCEEEEEECCC
T ss_pred CChhhcCc--cCCCCEEEECcC
Confidence 99988643 368999999643
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.5e-08 Score=84.74 Aligned_cols=108 Identities=13% Similarity=0.019 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcc----c-----------------------
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGR----Y----------------------- 91 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g----~----------------------- 91 (220)
.+.++||||||| +|..++.++. ....+|+++|.+ +.+++.|+++++. +
T Consensus 54 ~~g~~vLDiGCG-~G~~~~~~~~---~~~~~v~g~D~s-~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~ 128 (263)
T 2a14_A 54 LQGDTLIDIGSG-PTIYQVLAAC---DSFQDITLSDFT-DRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKE 128 (263)
T ss_dssp CCEEEEEESSCT-TCCGGGTTGG---GTEEEEEEEESC-HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCCceEEEeCCC-ccHHHHHHHH---hhhcceeecccc-HHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHH
Confidence 456789999997 7866554442 212479999999 9999999987641 0
Q ss_pred ---CCcEE-EEEcchhhhhhh---cCCCccEEEEcCCC-----CCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 92 ---ANCIE-FVKGDAQKLLMG---DYRGADFVLIDCNI-----DIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 92 ---~~~Ve-~v~gda~~~L~~---~~~~~D~VfiD~~k-----~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
..+|+ ++++|..+..|. ..++||+|+.-.-- +..++...++.+.+. |+| ||.+++.....
T Consensus 129 ~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~--LKP-GG~li~~~~~~ 200 (263)
T 2a14_A 129 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASL--LKP-GGHLVTTVTLR 200 (263)
T ss_dssp HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTT--EEE-EEEEEEEEESS
T ss_pred HHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHH--cCC-CcEEEEEEeec
Confidence 11354 899998874331 14689999974211 114567788888898 887 88888775543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.67 E-value=6.4e-08 Score=79.00 Aligned_cols=93 Identities=15% Similarity=0.073 Sum_probs=67.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhh-----hh-cC--
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLL-----MG-DY-- 110 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L-----~~-~~-- 110 (220)
.+..+|||+||| +|..|..|++. +++|++||.+ +.. .. .+++++++|+.+.- .. +.
T Consensus 24 ~~g~~VLDlG~G-~G~~s~~la~~----~~~V~gvD~~-~~~---------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~ 87 (191)
T 3dou_A 24 RKGDAVIEIGSS-PGGWTQVLNSL----ARKIISIDLQ-EME---------EI-AGVRFIRCDIFKETIFDDIDRALREE 87 (191)
T ss_dssp CTTCEEEEESCT-TCHHHHHHTTT----CSEEEEEESS-CCC---------CC-TTCEEEECCTTSSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEeec-CCHHHHHHHHc----CCcEEEEecc-ccc---------cC-CCeEEEEccccCHHHHHHHHHHhhcc
Confidence 567899999996 99999988764 7899999999 641 12 57999999986521 01 11
Q ss_pred --CCccEEEEcCCCCC-c-----------cHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 111 --RGADFVLIDCNIDI-D-----------GHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 111 --~~~D~VfiD~~k~~-~-----------~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++||+|+.|+.... + .....++.+.+. |+| ||.+++.
T Consensus 88 ~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~--Lkp-GG~lv~k 138 (191)
T 3dou_A 88 GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRY--LRN-GGNVLLK 138 (191)
T ss_dssp TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHH--ccC-CCEEEEE
Confidence 48999999975411 1 113456777787 876 8888875
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.5e-07 Score=82.28 Aligned_cols=104 Identities=8% Similarity=0.016 Sum_probs=71.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCC-----cEEEEEcch------hhhh
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYAN-----CIEFVKGDA------QKLL 106 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~-----~Ve~v~gda------~~~L 106 (220)
+..+||||||| +|..+..++.. .+++|++||++ +++++.|++... +... ++++.++|. .+ |
T Consensus 48 ~~~~VLDlGCG-~G~~l~~~~~~---~~~~v~GiD~S-~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~-l 121 (302)
T 2vdw_A 48 NKRKVLAIDFG-NGADLEKYFYG---EIALLVATDPD-ADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSS-V 121 (302)
T ss_dssp SCCEEEETTCT-TTTTHHHHHHT---TCSEEEEEESC-HHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHH-H
T ss_pred CCCeEEEEecC-CcHhHHHHHhc---CCCeEEEEECC-HHHHHHHHHHHHhccccccccccccchhhhhcccchhhhh-h
Confidence 35799999997 88644444432 15799999999 999999999876 3211 377888877 33 2
Q ss_pred hh--cCCCccEEEEcCCC----CCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 107 MG--DYRGADFVLIDCNI----DIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 107 ~~--~~~~~D~VfiD~~k----~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+. ..++||+|+.-..- +.......++.+.+. |+| ||++++...
T Consensus 122 ~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~--Lkp-GG~~i~~~~ 170 (302)
T 2vdw_A 122 REVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSEL--TAS-GGKVLITTM 170 (302)
T ss_dssp HTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHH--EEE-EEEEEEEEE
T ss_pred hccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHH--cCC-CCEEEEEeC
Confidence 21 13689999853211 012347889999999 987 998887643
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.65 E-value=6e-08 Score=84.94 Aligned_cols=113 Identities=12% Similarity=-0.035 Sum_probs=75.8
Q ss_pred CCChhHHHHHHHHHhh---CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE
Q 042616 23 GKEPDVGEFISALAAG---NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK 99 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~---~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~ 99 (220)
.++..--.+..+|... .+.+.||||||| +|++|.+|++. ..++|++||.+ +.+++.+.++- .++....
T Consensus 65 yvsrg~~Kl~~~l~~~~~~~~g~~vLDiGcG-TG~~t~~L~~~---ga~~V~aVDvs-~~mL~~a~r~~----~rv~~~~ 135 (291)
T 3hp7_A 65 YVSRGGLKLEKALAVFNLSVEDMITIDIGAS-TGGFTDVMLQN---GAKLVYAVDVG-TNQLVWKLRQD----DRVRSME 135 (291)
T ss_dssp SSSTTHHHHHHHHHHTTCCCTTCEEEEETCT-TSHHHHHHHHT---TCSEEEEECSS-SSCSCHHHHTC----TTEEEEC
T ss_pred cccchHHHHHHHHHhcCCCccccEEEecCCC-ccHHHHHHHhC---CCCEEEEEECC-HHHHHHHHHhC----cccceec
Confidence 4555555555555433 245799999997 99999998874 24799999999 99888754431 2232222
Q ss_pred -cchhhhhh-hcC-CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 100 -GDAQKLLM-GDY-RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 100 -gda~~~L~-~~~-~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.++..+-+ .+. .+||+|++|..- ......+..+.+. |+| ||.+++
T Consensus 136 ~~ni~~l~~~~l~~~~fD~v~~d~sf--~sl~~vL~e~~rv--Lkp-GG~lv~ 183 (291)
T 3hp7_A 136 QYNFRYAEPVDFTEGLPSFASIDVSF--ISLNLILPALAKI--LVD-GGQVVA 183 (291)
T ss_dssp SCCGGGCCGGGCTTCCCSEEEECCSS--SCGGGTHHHHHHH--SCT-TCEEEE
T ss_pred ccCceecchhhCCCCCCCEEEEEeeH--hhHHHHHHHHHHH--cCc-CCEEEE
Confidence 23322111 112 349999999987 6778899999999 987 666655
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.64 E-value=9.8e-08 Score=86.33 Aligned_cols=95 Identities=12% Similarity=0.083 Sum_probs=74.8
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCC------------------------------------CC
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQ------------------------------------TG 67 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~------------------------------------~~ 67 (220)
+.+..++.|..++.-.+...|||.+|| +|..++.+|..+.. ..
T Consensus 179 l~e~lAa~ll~~~~~~~~~~vlDp~CG-SGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 257 (385)
T 3ldu_A 179 IRETLAAGLIYLTPWKAGRVLVDPMCG-SGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK 257 (385)
T ss_dssp CCHHHHHHHHHTSCCCTTSCEEETTCT-TCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred CcHHHHHHHHHhhCCCCCCeEEEcCCC-CCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence 344556655555555567889999997 89998887765432 12
Q ss_pred cEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 68 GRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 68 grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
.+|+++|.| +.+++.|++|+. ++.++|++.++|+.++.+ ..+||+|+.|.+-
T Consensus 258 ~~V~GvDid-~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~--~~~~D~Iv~NPPy 311 (385)
T 3ldu_A 258 FKIYGYDID-EESIDIARENAEIAGVDEYIEFNVGDATQFKS--EDEFGFIITNPPY 311 (385)
T ss_dssp CCEEEEESC-HHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC--SCBSCEEEECCCC
T ss_pred ceEEEEECC-HHHHHHHHHHHHHcCCCCceEEEECChhhcCc--CCCCcEEEECCCC
Confidence 689999999 999999999997 776789999999998654 3589999999985
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.4e-08 Score=79.80 Aligned_cols=100 Identities=8% Similarity=0.007 Sum_probs=74.1
Q ss_pred hHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhh
Q 042616 27 DVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLL 106 (220)
Q Consensus 27 ~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L 106 (220)
....++..+....+..+||||||| +|..+..|+ .+++++|.+ +. +++++++|+.+ +
T Consensus 54 ~~~~~~~~l~~~~~~~~vLDiG~G-~G~~~~~l~-------~~v~~~D~s-~~--------------~~~~~~~d~~~-~ 109 (215)
T 2zfu_A 54 PVDRIARDLRQRPASLVVADFGCG-DCRLASSIR-------NPVHCFDLA-SL--------------DPRVTVCDMAQ-V 109 (215)
T ss_dssp HHHHHHHHHHTSCTTSCEEEETCT-TCHHHHHCC-------SCEEEEESS-CS--------------STTEEESCTTS-C
T ss_pred HHHHHHHHHhccCCCCeEEEECCc-CCHHHHHhh-------ccEEEEeCC-CC--------------CceEEEecccc-C
Confidence 344567666656677899999997 899887662 589999999 65 46788888877 3
Q ss_pred hhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 107 MGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+...++||+|+........+....++.+.+. |+| ||.+++-+..
T Consensus 110 ~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~--L~~-gG~l~i~~~~ 153 (215)
T 2zfu_A 110 PLEDESVDVAVFCLSLMGTNIRDFLEEANRV--LKP-GGLLKVAEVS 153 (215)
T ss_dssp SCCTTCEEEEEEESCCCSSCHHHHHHHHHHH--EEE-EEEEEEEECG
T ss_pred CCCCCCEeEEEEehhccccCHHHHHHHHHHh--CCC-CeEEEEEEcC
Confidence 3224689999987654335678899999998 886 7777665443
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-07 Score=81.57 Aligned_cols=81 Identities=16% Similarity=0.125 Sum_probs=67.4
Q ss_pred CCC-CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEE
Q 042616 20 GKR-GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFV 98 (220)
Q Consensus 20 ~~~-~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v 98 (220)
++. .+.+...+.+...+...+..+||||||| +|..|..|+....+.+++|++||.| +.+++.++++. .++++++
T Consensus 21 GQ~fL~d~~i~~~iv~~~~~~~~~~VLEIG~G-~G~lt~~La~~~~~~~~~V~avDid-~~~l~~a~~~~---~~~v~~i 95 (279)
T 3uzu_A 21 GQNFLVDHGVIDAIVAAIRPERGERMVEIGPG-LGALTGPVIARLATPGSPLHAVELD-RDLIGRLEQRF---GELLELH 95 (279)
T ss_dssp SCCEECCHHHHHHHHHHHCCCTTCEEEEECCT-TSTTHHHHHHHHCBTTBCEEEEECC-HHHHHHHHHHH---GGGEEEE
T ss_pred CccccCCHHHHHHHHHhcCCCCcCEEEEEccc-cHHHHHHHHHhCCCcCCeEEEEECC-HHHHHHHHHhc---CCCcEEE
Confidence 454 4678888888888888888999999997 9999999998754223569999999 99999999984 3689999
Q ss_pred Ecchhhh
Q 042616 99 KGDAQKL 105 (220)
Q Consensus 99 ~gda~~~ 105 (220)
++|+.++
T Consensus 96 ~~D~~~~ 102 (279)
T 3uzu_A 96 AGDALTF 102 (279)
T ss_dssp ESCGGGC
T ss_pred ECChhcC
Confidence 9999885
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.8e-07 Score=84.94 Aligned_cols=96 Identities=6% Similarity=-0.034 Sum_probs=75.8
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCC------------------------------------C
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQ------------------------------------T 66 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~------------------------------------~ 66 (220)
.+.+..+..|-.++.-.+...+||.+|| +|..++.+|..+.. .
T Consensus 184 pl~e~lAa~ll~l~~~~~~~~vlDp~CG-SGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~ 262 (393)
T 3k0b_A 184 PIKETMAAALVLLTSWHPDRPFYDPVCG-SGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQ 262 (393)
T ss_dssp SCCHHHHHHHHHHSCCCTTSCEEETTCT-TSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred CCcHHHHHHHHHHhCCCCCCeEEEcCCC-CCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccC
Confidence 3455666666666655667889999997 89998877764432 1
Q ss_pred CcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 67 GGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 67 ~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
..+|+++|.| +.+++.|++|++ ++.++|+++++|+.+..+ ..+||+|+.|.+-
T Consensus 263 ~~~V~GvDid-~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~--~~~fD~Iv~NPPY 317 (393)
T 3k0b_A 263 PLNIIGGDID-ARLIEIAKQNAVEAGLGDLITFRQLQVADFQT--EDEYGVVVANPPY 317 (393)
T ss_dssp CCCEEEEESC-HHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC--CCCSCEEEECCCC
T ss_pred CceEEEEECC-HHHHHHHHHHHHHcCCCCceEEEECChHhCCC--CCCCCEEEECCCC
Confidence 2579999999 999999999997 777789999999998653 3589999999884
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-07 Score=83.98 Aligned_cols=102 Identities=12% Similarity=0.083 Sum_probs=73.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+..+||||||| +|..+..|++..+ +.+++.+|.. ..++ +++++ ++.++|+++.+|+.+.+| +||+|
T Consensus 183 ~~~~~vLDvG~G-~G~~~~~l~~~~p--~~~~~~~D~~--~~~~--~~~~~~~~~~~~v~~~~~d~~~~~p----~~D~v 251 (348)
T 3lst_A 183 PATGTVADVGGG-RGGFLLTVLREHP--GLQGVLLDRA--EVVA--RHRLDAPDVAGRWKVVEGDFLREVP----HADVH 251 (348)
T ss_dssp CSSEEEEEETCT-TSHHHHHHHHHCT--TEEEEEEECH--HHHT--TCCCCCGGGTTSEEEEECCTTTCCC----CCSEE
T ss_pred cCCceEEEECCc-cCHHHHHHHHHCC--CCEEEEecCH--HHhh--cccccccCCCCCeEEEecCCCCCCC----CCcEE
Confidence 456899999996 9999999998875 5788999985 3343 44443 666789999999975443 89999
Q ss_pred EEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 117 LIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 117 fiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
++-.--.. .+....++.+.+. |+|.|-+++.|.+.
T Consensus 252 ~~~~vlh~~~d~~~~~~L~~~~~~--LkpgG~l~i~e~~~ 289 (348)
T 3lst_A 252 VLKRILHNWGDEDSVRILTNCRRV--MPAHGRVLVIDAVV 289 (348)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHT--CCTTCEEEEEECCB
T ss_pred EEehhccCCCHHHHHHHHHHHHHh--cCCCCEEEEEEecc
Confidence 98553311 2235889999998 88744445555444
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.8e-08 Score=88.70 Aligned_cols=100 Identities=15% Similarity=0.098 Sum_probs=72.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEE-EEEcchhhhhhhcCCCccEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIE-FVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve-~v~gda~~~L~~~~~~~D~Vf 117 (220)
.+..+||||||| +|..+..|+.. +.+|++||++ +.+++.|++. ++..... +..+++.+ ++...++||+|+
T Consensus 106 ~~~~~VLDiGcG-~G~~~~~l~~~----g~~v~gvD~s-~~~~~~a~~~--~~~~~~~~~~~~~~~~-l~~~~~~fD~I~ 176 (416)
T 4e2x_A 106 GPDPFIVEIGCN-DGIMLRTIQEA----GVRHLGFEPS-SGVAAKAREK--GIRVRTDFFEKATADD-VRRTEGPANVIY 176 (416)
T ss_dssp SSSCEEEEETCT-TTTTHHHHHHT----TCEEEEECCC-HHHHHHHHTT--TCCEECSCCSHHHHHH-HHHHHCCEEEEE
T ss_pred CCCCEEEEecCC-CCHHHHHHHHc----CCcEEEECCC-HHHHHHHHHc--CCCcceeeechhhHhh-cccCCCCEEEEE
Confidence 356799999997 99999988874 6799999999 9999999886 3211122 22334433 433247899999
Q ss_pred EcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 118 IDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 118 iD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
...-- .-.+....++.+.+. |+| ||++++.
T Consensus 177 ~~~vl~h~~d~~~~l~~~~r~--Lkp-gG~l~i~ 207 (416)
T 4e2x_A 177 AANTLCHIPYVQSVLEGVDAL--LAP-DGVFVFE 207 (416)
T ss_dssp EESCGGGCTTHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred ECChHHhcCCHHHHHHHHHHH--cCC-CeEEEEE
Confidence 87653 114678899999999 886 8888875
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.3e-07 Score=80.74 Aligned_cols=117 Identities=13% Similarity=0.043 Sum_probs=79.0
Q ss_pred HHHHHhhCCCCEEEEEcCCch--HHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhccc-CCcEEEEEcchhhhh--
Q 042616 32 ISALAAGNNAQLIVMACSSIA--VSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRY-ANCIEFVKGDAQKLL-- 106 (220)
Q Consensus 32 L~~La~~~~a~~ILEIGtg~~--G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~-~~~Ve~v~gda~~~L-- 106 (220)
+..|+...+.+.||||||| + +-.+..++....+ +.+|+.||.+ |.+++.||+.+.+. ..+++++++|..+.-
T Consensus 70 v~~l~~~~g~~q~LDLGcG-~pT~~~~~~la~~~~P-~arVv~VD~s-p~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~ 146 (277)
T 3giw_A 70 VAHLAKEAGIRQFLDIGTG-IPTSPNLHEIAQSVAP-ESRVVYVDND-PIVLTLSQGLLASTPEGRTAYVEADMLDPASI 146 (277)
T ss_dssp HHHHHHTSCCCEEEEESCC-SCCSSCHHHHHHHHCT-TCEEEEEECC-HHHHHTTHHHHCCCSSSEEEEEECCTTCHHHH
T ss_pred HHHhccccCCCEEEEeCCC-CCcccHHHHHHHHHCC-CCEEEEEeCC-hHHHHHHHHHhccCCCCcEEEEEecccChhhh
Confidence 3344444567899999996 5 3345666665544 7899999999 99999999999732 357999999997742
Q ss_pred -h--hcCCCcc-----EEEEcCCC----CCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 107 -M--GDYRGAD-----FVLIDCNI----DIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 107 -~--~~~~~~D-----~VfiD~~k----~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
. ...+.|| .|++.+-. +..+...+++.+... |+| ||+++......
T Consensus 147 l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~--L~P-GG~Lvls~~~~ 203 (277)
T 3giw_A 147 LDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEP--LPS-GSYLAMSIGTA 203 (277)
T ss_dssp HTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTT--SCT-TCEEEEEEECC
T ss_pred hcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHh--CCC-CcEEEEEeccC
Confidence 1 1113455 35554433 001235789999988 876 88877765543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-07 Score=80.13 Aligned_cols=114 Identities=13% Similarity=0.017 Sum_probs=73.9
Q ss_pred CCCChhHHHHHHHHHhh---CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEE
Q 042616 22 RGKEPDVGEFISALAAG---NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFV 98 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~---~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v 98 (220)
..+++..-.+..+|... .+.++||||||| +|..|..|++. . ..+|++||.+ +.+++.|+++.. ++...
T Consensus 16 ~yvsrg~~kL~~~L~~~~~~~~g~~VLDiGcG-tG~~t~~la~~-g--~~~V~gvDis-~~ml~~a~~~~~----~~~~~ 86 (232)
T 3opn_A 16 RYVSRGGLKLEKALKEFHLEINGKTCLDIGSS-TGGFTDVMLQN-G--AKLVYALDVG-TNQLAWKIRSDE----RVVVM 86 (232)
T ss_dssp CSSSTTHHHHHHHHHHTTCCCTTCEEEEETCT-TSHHHHHHHHT-T--CSEEEEECSS-CCCCCHHHHTCT----TEEEE
T ss_pred CccCCcHHHHHHHHHHcCCCCCCCEEEEEccC-CCHHHHHHHhc-C--CCEEEEEcCC-HHHHHHHHHhCc----ccccc
Confidence 35555444444444332 345799999997 99999999874 1 2599999999 999998887643 22211
Q ss_pred Ec-chhhhh-hhcCC-CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 99 KG-DAQKLL-MGDYR-GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 99 ~g-da~~~L-~~~~~-~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.. +..... ..+.. .||.+..|.-- .....+++.+.+. |+| ||.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~d~~~~D~v~--~~l~~~l~~i~rv--Lkp-gG~lv~ 135 (232)
T 3opn_A 87 EQFNFRNAVLADFEQGRPSFTSIDVSF--ISLDLILPPLYEI--LEK-NGEVAA 135 (232)
T ss_dssp CSCCGGGCCGGGCCSCCCSEEEECCSS--SCGGGTHHHHHHH--SCT-TCEEEE
T ss_pred ccceEEEeCHhHcCcCCCCEEEEEEEh--hhHHHHHHHHHHh--ccC-CCEEEE
Confidence 11 111111 01112 36888888776 6668889999999 987 776665
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-07 Score=75.55 Aligned_cols=97 Identities=12% Similarity=0.012 Sum_probs=68.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCC-------CcEEEEEeCCchhHHHHHHHHhcccCCcEEEE-Ecchhhhhh---
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQT-------GGRVVCILSGVIGDIDASKKSLGRYANCIEFV-KGDAQKLLM--- 107 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~-------~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v-~gda~~~L~--- 107 (220)
.+..+|||+||| +|..++.|+...+.. .++|+++|.+ +.. .. .+++++ .+|..+...
T Consensus 21 ~~~~~vLDlGcG-~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s-~~~---------~~-~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 21 RPGLRVLDCGAA-PGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLL-HIF---------PL-EGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp CTTCEEEEETCC-SCHHHHHHHHHTTTTCCCTTSCCCEEEEECSS-CCC---------CC-TTCEEECSCCTTSHHHHHH
T ss_pred CCCCEEEEeCCC-CCHHHHHHHHHhccccccccCCCceEEEEech-hcc---------cC-CCCeEEEeccCCCHHHHHH
Confidence 457899999997 899999999886531 1899999999 631 12 468888 888654311
Q ss_pred ---hc-CCCccEEEEcCCCCC-cc----H-------HHHHHHHHhhcCCCCCCEEEEEe
Q 042616 108 ---GD-YRGADFVLIDCNIDI-DG----H-------KNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 108 ---~~-~~~~D~VfiD~~k~~-~~----y-------~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+ .++||+|+.|...+. .. . ...++.+.+. |+| ||.+++.
T Consensus 89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~lv~~ 144 (196)
T 2nyu_A 89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDI--LQP-GGTFLCK 144 (196)
T ss_dssp HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHH--hcC-CCEEEEE
Confidence 11 247999999874310 11 1 3678888888 876 8887775
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.1e-07 Score=83.15 Aligned_cols=95 Identities=5% Similarity=-0.045 Sum_probs=74.8
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCC------------------------------------CC
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQ------------------------------------TG 67 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~------------------------------------~~ 67 (220)
+.+..+..|-.++.-.+...+||.+|| +|...+.+|..+.. ..
T Consensus 178 l~e~LAaall~l~~~~~~~~llDp~CG-SGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 256 (384)
T 3ldg_A 178 IKENMAAAIILLSNWFPDKPFVDPTCG-SGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ 256 (384)
T ss_dssp CCHHHHHHHHHHTTCCTTSCEEETTCT-TSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred CcHHHHHHHHHHhCCCCCCeEEEeCCc-CCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence 445566666666555667889999997 89988877654432 12
Q ss_pred cEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 68 GRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 68 grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
.+|+++|.| +.+++.|++|++ |+.++|+++++|+.++.+ ..+||+|+.|.+-
T Consensus 257 ~~v~GvDid-~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~--~~~fD~Iv~NPPY 310 (384)
T 3ldg_A 257 LDISGFDFD-GRMVEIARKNAREVGLEDVVKLKQMRLQDFKT--NKINGVLISNPPY 310 (384)
T ss_dssp CCEEEEESC-HHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC--CCCSCEEEECCCC
T ss_pred ceEEEEECC-HHHHHHHHHHHHHcCCCCceEEEECChHHCCc--cCCcCEEEECCch
Confidence 579999999 999999999997 787789999999998653 3589999999874
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=5.2e-07 Score=76.89 Aligned_cols=106 Identities=13% Similarity=0.038 Sum_probs=77.2
Q ss_pred CCC-CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEE
Q 042616 20 GKR-GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFV 98 (220)
Q Consensus 20 ~~~-~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v 98 (220)
++. ...+...+.+...+...+..+||||||| +|..|..|+.. ..++|++||.| +.+++.++++ . ..+++++
T Consensus 10 GQnfl~d~~i~~~iv~~~~~~~~~~VLDiG~G-~G~lt~~L~~~---~~~~v~avEid-~~~~~~~~~~-~--~~~v~~i 81 (249)
T 3ftd_A 10 GQHLLVSEGVLKKIAEELNIEEGNTVVEVGGG-TGNLTKVLLQH---PLKKLYVIELD-REMVENLKSI-G--DERLEVI 81 (249)
T ss_dssp CSSCEECHHHHHHHHHHTTCCTTCEEEEEESC-HHHHHHHHTTS---CCSEEEEECCC-HHHHHHHTTS-C--CTTEEEE
T ss_pred cccccCCHHHHHHHHHhcCCCCcCEEEEEcCc-hHHHHHHHHHc---CCCeEEEEECC-HHHHHHHHhc-c--CCCeEEE
Confidence 553 4567778777777777788999999997 99999998864 14799999999 9999999988 3 3579999
Q ss_pred Ecchhhh-hhhcCCCccEEEEcCCCCCccHHHHHHHHHh
Q 042616 99 KGDAQKL-LMGDYRGADFVLIDCNIDIDGHKNVFRAAKE 136 (220)
Q Consensus 99 ~gda~~~-L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~ 136 (220)
++|+.++ ++.+.+++ .|+-+.+- ......+..+..
T Consensus 82 ~~D~~~~~~~~~~~~~-~vv~NlPy--~i~~~il~~ll~ 117 (249)
T 3ftd_A 82 NEDASKFPFCSLGKEL-KVVGNLPY--NVASLIIENTVY 117 (249)
T ss_dssp CSCTTTCCGGGSCSSE-EEEEECCT--TTHHHHHHHHHH
T ss_pred EcchhhCChhHccCCc-EEEEECch--hccHHHHHHHHh
Confidence 9999875 33322333 56656554 444555444444
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=8.3e-07 Score=78.82 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=79.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
.+.++||||||| +|..++.|+++.| +-+++..|. |+.++.|++++. +..++|+++.||..+. | ...+|+++
T Consensus 178 ~~~~~v~DvGgG-~G~~~~~l~~~~p--~~~~~~~dl--p~v~~~a~~~~~~~~~~rv~~~~gD~~~~-~--~~~~D~~~ 249 (353)
T 4a6d_A 178 SVFPLMCDLGGG-AGALAKECMSLYP--GCKITVFDI--PEVVWTAKQHFSFQEEEQIDFQEGDFFKD-P--LPEADLYI 249 (353)
T ss_dssp GGCSEEEEETCT-TSHHHHHHHHHCS--SCEEEEEEC--HHHHHHHHHHSCC--CCSEEEEESCTTTS-C--CCCCSEEE
T ss_pred ccCCeEEeeCCC-CCHHHHHHHHhCC--CceeEeccC--HHHHHHHHHhhhhcccCceeeecCccccC-C--CCCceEEE
Confidence 446899999986 9999999999876 467777775 789999999987 4468999999998652 1 34689998
Q ss_pred EcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 118 IDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 118 iD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+-.--+. ++-..+|+.+.+. |+|.|-++|+|.++.
T Consensus 250 ~~~vlh~~~d~~~~~iL~~~~~a--l~pgg~lli~e~~~~ 287 (353)
T 4a6d_A 250 LARVLHDWADGKCSHLLERIYHT--CKPGGGILVIESLLD 287 (353)
T ss_dssp EESSGGGSCHHHHHHHHHHHHHH--CCTTCEEEEEECCCC
T ss_pred eeeecccCCHHHHHHHHHHHHhh--CCCCCEEEEEEeeeC
Confidence 7543310 2335779999999 888666788887764
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=7.2e-07 Score=77.25 Aligned_cols=122 Identities=11% Similarity=0.051 Sum_probs=81.8
Q ss_pred CCChhHHHHHHHH-HhhCCCCEEEEEcCCchHH----HHHHHHHHcCCC--CcEEEEEeCCchhHHHHHHHHhc------
Q 042616 23 GKEPDVGEFISAL-AAGNNAQLIVMACSSIAVS----RTLALVAAARQT--GGRVVCILSGVIGDIDASKKSLG------ 89 (220)
Q Consensus 23 ~~~p~~~~~L~~L-a~~~~a~~ILEIGtg~~G~----sTl~LA~A~~~~--~grV~tIE~d~~~~~~~Ar~~l~------ 89 (220)
+-+|..=+.+... ....++.+|+++||| +|. .++.|++..+.. +.+|+++|++ +++++.|++++-
T Consensus 87 fRd~~~f~~l~~~llp~~~~~rIld~GCg-TGee~ysiAi~L~e~~~~~~~~~~I~atDis-~~~L~~Ar~~~y~~~~~~ 164 (274)
T 1af7_A 87 FREAHHFPILAEHARRRHGEYRVWSAAAS-TGEEPYSIAITLADALGMAPGRWKVFASDID-TEVLEKARSGIYRLSELK 164 (274)
T ss_dssp TTTTTHHHHHHHHHHHSCSCEEEEESCCT-TTHHHHHHHHHHHHHHCSCTTSEEEEEEESC-HHHHHHHHHTEEEGGGGT
T ss_pred cCChHHHHHHHHHccCCCCCcEEEEeecc-CChhHHHHHHHHHHhcccCCCCeEEEEEECC-HHHHHHHHhcCCchhhhh
Confidence 3444554444432 222245789999996 997 455667665432 2489999999 999999999751
Q ss_pred --------------------------ccCCcEEEEEcchhhh-hhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcC
Q 042616 90 --------------------------RYANCIEFVKGDAQKL-LMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVM 139 (220)
Q Consensus 90 --------------------------g~~~~Ve~v~gda~~~-L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~ 139 (220)
.+.++|+|.++|..+. ++ ..++||+||.-.-. +.....++++.+...
T Consensus 165 ~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~-~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~-- 241 (274)
T 1af7_A 165 TLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYN-VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPL-- 241 (274)
T ss_dssp TSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCC-CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGG--
T ss_pred cCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCC-cCCCeeEEEECCchHhCCHHHHHHHHHHHHHH--
Confidence 0113699999998772 22 13689999973321 112336788888888
Q ss_pred CCCCCEEEEEe
Q 042616 140 HGSGAGVIVGY 150 (220)
Q Consensus 140 L~~~Ggviv~d 150 (220)
|+| ||+++.-
T Consensus 242 L~p-gG~L~lg 251 (274)
T 1af7_A 242 LKP-DGLLFAG 251 (274)
T ss_dssp EEE-EEEEEEC
T ss_pred hCC-CcEEEEE
Confidence 886 8988874
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.7e-07 Score=80.52 Aligned_cols=125 Identities=14% Similarity=0.009 Sum_probs=94.3
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ 103 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~ 103 (220)
.++....++..+.. .++..+||+.+| +|..++ ++++. +.+++.||.+ ++.++..++|++. .++++++.+|+.
T Consensus 76 ~p~~l~~yf~~l~~-~n~~~~LDlfaG-SGaLgi---EaLS~-~d~~vfvE~~-~~a~~~L~~Nl~~-~~~~~V~~~D~~ 147 (283)
T 2oo3_A 76 LPSLFLEYISVIKQ-INLNSTLSYYPG-SPYFAI---NQLRS-QDRLYLCELH-PTEYNFLLKLPHF-NKKVYVNHTDGV 147 (283)
T ss_dssp SCGGGHHHHHHHHH-HSSSSSCCEEEC-HHHHHH---HHSCT-TSEEEEECCS-HHHHHHHTTSCCT-TSCEEEECSCHH
T ss_pred CcHHHHHHHHHHHH-hcCCCceeEeCC-cHHHHH---HHcCC-CCeEEEEeCC-HHHHHHHHHHhCc-CCcEEEEeCcHH
Confidence 44445667777766 566779999986 888777 45554 6899999999 9999999999985 368999999998
Q ss_pred hhhhhcC---CCccEEEEcCCCC-CccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 104 KLLMGDY---RGADFVLIDCNID-IDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 104 ~~L~~~~---~~~D~VfiD~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
..|..+. .+||+||+|++-. ...|.+.++.+.+...+-+.|-++|-+-+..+.
T Consensus 148 ~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~ 204 (283)
T 2oo3_A 148 SKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKA 204 (283)
T ss_dssp HHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHH
T ss_pred HHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchH
Confidence 8886543 3699999999874 247888888777643345667777777776543
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.6e-07 Score=78.94 Aligned_cols=90 Identities=11% Similarity=-0.119 Sum_probs=67.6
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcE--EEEEeCCchhHHHHHHHHhcccCCcEEEEEcc
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGR--VVCILSGVIGDIDASKKSLGRYANCIEFVKGD 101 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~gr--V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd 101 (220)
+.|...+.+...+...+..+||||||| +|+.|. |+. +++ |++||.| +.+++.+++++... ++++++++|
T Consensus 5 ~d~~i~~~iv~~~~~~~~~~VLEIG~G-~G~lt~-l~~-----~~~~~v~avEid-~~~~~~a~~~~~~~-~~v~~i~~D 75 (252)
T 1qyr_A 5 NDQFVIDSIVSAINPQKGQAMVEIGPG-LAALTE-PVG-----ERLDQLTVIELD-RDLAARLQTHPFLG-PKLTIYQQD 75 (252)
T ss_dssp CCHHHHHHHHHHHCCCTTCCEEEECCT-TTTTHH-HHH-----TTCSCEEEECCC-HHHHHHHHTCTTTG-GGEEEECSC
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEECCC-CcHHHH-hhh-----CCCCeEEEEECC-HHHHHHHHHHhccC-CceEEEECc
Confidence 567777777777777777899999997 999999 654 245 9999999 99999999988643 589999999
Q ss_pred hhhh-hhhcC---CCccEEEEcCCC
Q 042616 102 AQKL-LMGDY---RGADFVLIDCNI 122 (220)
Q Consensus 102 a~~~-L~~~~---~~~D~VfiD~~k 122 (220)
+.++ ++... +..|.|+-..+-
T Consensus 76 ~~~~~~~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 76 AMTFNFGELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp GGGCCHHHHHHHHTSCEEEEEECCT
T ss_pred hhhCCHHHhhcccCCceEEEECCCC
Confidence 9874 33321 234566655544
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.1e-07 Score=86.74 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CCCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~~~D~ 115 (220)
.++.+||||||| .|..+.+||+. |.+|++||.+ +.+++.||.+.. +. -+|++++++++++.... .+.||+
T Consensus 65 ~~~~~vLDvGCG-~G~~~~~la~~----ga~V~giD~~-~~~i~~a~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~ 137 (569)
T 4azs_A 65 GRPLNVLDLGCA-QGFFSLSLASK----GATIVGIDFQ-QENINVCRALAEENPD-FAAEFRVGRIEEVIAALEEGEFDL 137 (569)
T ss_dssp TSCCEEEEETCT-TSHHHHHHHHT----TCEEEEEESC-HHHHHHHHHHHHTSTT-SEEEEEECCHHHHHHHCCTTSCSE
T ss_pred CCCCeEEEECCC-CcHHHHHHHhC----CCEEEEECCC-HHHHHHHHHHHHhcCC-CceEEEECCHHHHhhhccCCCccE
Confidence 467899999997 89999999974 8899999999 999999999886 43 36999999999986543 468999
Q ss_pred EEE
Q 042616 116 VLI 118 (220)
Q Consensus 116 Vfi 118 (220)
|+.
T Consensus 138 v~~ 140 (569)
T 4azs_A 138 AIG 140 (569)
T ss_dssp EEE
T ss_pred EEE
Confidence 974
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=6.7e-07 Score=80.39 Aligned_cols=119 Identities=15% Similarity=0.060 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--cc-----CCcEEEEEc
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RY-----ANCIEFVKG 100 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~-----~~~Ve~v~g 100 (220)
...+...+....+..+|||++++ .|-=|+.||+.+. +|+|+++|.+ +.+++..+++++ +. ..+|++.+.
T Consensus 136 aS~l~~~~L~~~pg~~VLD~CAa-PGGKT~~la~~~~--~~~l~A~D~~-~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~ 211 (359)
T 4fzv_A 136 ASLLPVLALGLQPGDIVLDLCAA-PGGKTLALLQTGC--CRNLAANDLS-PSRIARLQKILHSYVPEEIRDGNQVRVTSW 211 (359)
T ss_dssp GGHHHHHHHCCCTTEEEEESSCT-TCHHHHHHHHTTC--EEEEEEECSC-HHHHHHHHHHHHHHSCTTTTTSSSEEEECC
T ss_pred HHHHHHHHhCCCCCCEEEEecCC-ccHHHHHHHHhcC--CCcEEEEcCC-HHHHHHHHHHHHHhhhhhhccCCceEEEeC
Confidence 45566666667778999999985 7888888887543 5899999999 999999999986 32 257999999
Q ss_pred chhhhhhhcCCCccEEEEcCCCCC---------c------------cH----HHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDI---------D------------GH----KNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~---------~------------~y----~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|+..+-+...+.||.|++|++=.. . .. .++++.+.+. |+| ||+||.-...
T Consensus 212 D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~--lkp-GG~LVYsTCS 286 (359)
T 4fzv_A 212 DGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLA--TKP-GGHVVYSTCS 286 (359)
T ss_dssp CGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHT--EEE-EEEEEEEESC
T ss_pred chhhcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhc--CCC-CcEEEEEeCC
Confidence 998865443578999999987310 0 01 2455666666 776 9988876554
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.6e-07 Score=84.60 Aligned_cols=129 Identities=8% Similarity=-0.071 Sum_probs=94.9
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCC-----------CcEEEEEeCCchhHHHHHHHHhc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQT-----------GGRVVCILSGVIGDIDASKKSLG 89 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~-----------~grV~tIE~d~~~~~~~Ar~~l~ 89 (220)
+...++.+.+++..++...+..+|+|.||| +|.+.+.++..+... ..+++++|.+ +..++.|+.++.
T Consensus 152 ~fyTP~~v~~~mv~~l~~~~~~~VlDpacG-sG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~-~~~~~lA~~nl~ 229 (445)
T 2okc_A 152 QYFTPRPLIQAMVDCINPQMGETVCDPACG-TGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNT-PLVVTLASMNLY 229 (445)
T ss_dssp GGCCCHHHHHHHHHHHCCCTTCCEEETTCT-TCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESC-HHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHhCCCCCCEEeccCCC-cchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCC-HHHHHHHHHHHH
Confidence 446677788999888877777899999997 899988888765321 3679999999 999999999886
Q ss_pred --ccCC-cEEEEEcchhhhhhhcCCCccEEEEcCCCCCc------------------cHHHHHHHHHhhcCCCCCCEEE-
Q 042616 90 --RYAN-CIEFVKGDAQKLLMGDYRGADFVLIDCNIDID------------------GHKNVFRAAKESVMHGSGAGVI- 147 (220)
Q Consensus 90 --g~~~-~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~------------------~y~~~l~~l~~~~~L~~~Ggvi- 147 (220)
++.. ++.++++|+..... ...||+|+.+++-... ....+++.+... |+| ||.+
T Consensus 230 l~g~~~~~~~i~~gD~l~~~~--~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~--Lk~-gG~~a 304 (445)
T 2okc_A 230 LHGIGTDRSPIVCEDSLEKEP--STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLM--LKT-GGRAA 304 (445)
T ss_dssp HTTCCSSCCSEEECCTTTSCC--SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHH--EEE-EEEEE
T ss_pred HhCCCcCCCCEeeCCCCCCcc--cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHH--hcc-CCEEE
Confidence 6632 68899999877532 2489999998654110 023678888888 876 6553
Q ss_pred --EEecCCCCC
Q 042616 148 --VGYNALPKG 156 (220)
Q Consensus 148 --v~dNv~~~g 156 (220)
+.+++++.+
T Consensus 305 ~V~p~~~L~~~ 315 (445)
T 2okc_A 305 VVLPDNVLFEA 315 (445)
T ss_dssp EEEEHHHHHCS
T ss_pred EEECCcccccC
Confidence 445556554
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=9.6e-07 Score=79.93 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=77.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----c-c----CCcEEEEEcchhhhhhhc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----R-Y----ANCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g-~----~~~Ve~v~gda~~~L~~~ 109 (220)
.+|++||-||.| .|..+-.+.+- + ..+|+.||+| |+.++.|++++. + + .++++++.+|+.+++.+.
T Consensus 204 ~~pkrVLIIGgG-dG~~~revlkh--~-~~~V~~VEID-p~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~ 278 (381)
T 3c6k_A 204 YTGKDVLILGGG-DGGILCEIVKL--K-PKMVTMVEID-QMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRY 278 (381)
T ss_dssp CTTCEEEEEECT-TCHHHHHHHTT--C-CSEEEEEESC-HHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHH
T ss_pred CCCCeEEEECCC-cHHHHHHHHhc--C-CceeEEEccC-HHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhh
Confidence 457999999954 77766655542 3 4799999999 999999999874 1 1 245999999999998542
Q ss_pred ---CCCccEEEEcCCCCC----------ccH-HHHHHHHHhhcCCCCCCEEEEEe
Q 042616 110 ---YRGADFVLIDCNIDI----------DGH-KNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 110 ---~~~~D~VfiD~~k~~----------~~y-~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+.||+|++|..... ..| .++++.+.+. |+| ||+++..
T Consensus 279 ~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~--L~p-~GVlv~Q 330 (381)
T 3c6k_A 279 AKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKV--LKQ-DGKYFTQ 330 (381)
T ss_dssp HHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHT--EEE-EEEEEEE
T ss_pred hhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHh--cCC-CCEEEEe
Confidence 467999999964200 122 5778899998 876 9999874
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-06 Score=82.84 Aligned_cols=132 Identities=10% Similarity=-0.020 Sum_probs=95.5
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCC----------------cEEEEEeCCchhHHHH
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTG----------------GRVVCILSGVIGDIDA 83 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~----------------grV~tIE~d~~~~~~~ 83 (220)
++...++.+.++|..++...+..+|+|.+|| +|.+.+.++..+.... .+++++|.+ +..++.
T Consensus 149 G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCG-SG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid-~~~~~l 226 (541)
T 2ar0_A 149 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAG-TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV-PGTRRL 226 (541)
T ss_dssp -CCCCCHHHHHHHHHHHCCCTTCCEEETTCT-TTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESC-HHHHHH
T ss_pred CeeeCCHHHHHHHHHHhccCCCCeEecCCcc-cchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCC-HHHHHH
Confidence 4566777788998888877777899999997 8998888877654322 379999999 999999
Q ss_pred HHHHhc--ccCC----cEEEEEcchhhhhhhcCCCccEEEEcCCCCC---------------ccHHHHHHHHHhhcCCCC
Q 042616 84 SKKSLG--RYAN----CIEFVKGDAQKLLMGDYRGADFVLIDCNIDI---------------DGHKNVFRAAKESVMHGS 142 (220)
Q Consensus 84 Ar~~l~--g~~~----~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~---------------~~y~~~l~~l~~~~~L~~ 142 (220)
|+.++. +... ++.++++|+....+.....||+|+.+++-.. ..+..+++.+... |+|
T Consensus 227 A~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~--Lk~ 304 (541)
T 2ar0_A 227 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIET--LHP 304 (541)
T ss_dssp HHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHH--EEE
T ss_pred HHHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHH--hCC
Confidence 999885 6533 2889999987654322468999999876411 1123578888888 876
Q ss_pred CCEE---EEEecCCCCC
Q 042616 143 GAGV---IVGYNALPKG 156 (220)
Q Consensus 143 ~Ggv---iv~dNv~~~g 156 (220)
||. |+.+.+++.+
T Consensus 305 -gGr~a~V~p~~~L~~~ 320 (541)
T 2ar0_A 305 -GGRAAVVVPDNVLFEG 320 (541)
T ss_dssp -EEEEEEEEEHHHHHCC
T ss_pred -CCEEEEEecCcceecC
Confidence 654 4445555554
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-06 Score=76.69 Aligned_cols=93 Identities=11% Similarity=-0.077 Sum_probs=67.1
Q ss_pred hCCCCEEEEEcCC-----chHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEE-EEcchhhhhhhcCC
Q 042616 38 GNNAQLIVMACSS-----IAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEF-VKGDAQKLLMGDYR 111 (220)
Q Consensus 38 ~~~a~~ILEIGtg-----~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~-v~gda~~~L~~~~~ 111 (220)
..+..+|||+||| ++|. ..++..+++ +++|++||.+ +. + .++++ +++|+.+.. ..+
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~-~~~V~gvDis-~~--------v----~~v~~~i~gD~~~~~--~~~ 122 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPT-GTLLVDSDLN-DF--------V----SDADSTLIGDCATVH--TAN 122 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCT-TCEEEEEESS-CC--------B----CSSSEEEESCGGGCC--CSS
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCC-CCEEEEEECC-CC--------C----CCCEEEEECccccCC--ccC
Confidence 3556799999993 1576 445655554 6899999999 66 2 46888 999998742 136
Q ss_pred CccEEEEcCCCC------------CccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 112 GADFVLIDCNID------------IDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 112 ~~D~VfiD~~k~------------~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+||+|+.|.... ...+...++.+.+. |+| ||.+++..
T Consensus 123 ~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~--Lkp-GG~~v~~~ 171 (290)
T 2xyq_A 123 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQK--LAL-GGSIAVKI 171 (290)
T ss_dssp CEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHH--EEE-EEEEEEEE
T ss_pred cccEEEEcCCccccccccccccchHHHHHHHHHHHHHh--cCC-CcEEEEEE
Confidence 899999986431 01245788999998 886 88888863
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-07 Score=81.53 Aligned_cols=97 Identities=12% Similarity=-0.108 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHh-c--ccCCcEEEE--EcchhhhhhhcCCCcc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSL-G--RYANCIEFV--KGDAQKLLMGDYRGAD 114 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l-~--g~~~~Ve~v--~gda~~~L~~~~~~~D 114 (220)
+.++|||+||| +|..|..|+.. ++|++||.+ + ++..+++.. . ....+|+++ ++|+.+ ++ .++||
T Consensus 82 ~g~~VLDlGcG-tG~~s~~la~~-----~~V~gVD~s-~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~--~~~fD 150 (276)
T 2wa2_A 82 LKGTVVDLGCG-RGSWSYYAASQ-----PNVREVKAY-T-LGTSGHEKPRLVETFGWNLITFKSKVDVTK-ME--PFQAD 150 (276)
T ss_dssp CCEEEEEESCT-TCHHHHHHHTS-----TTEEEEEEE-C-CCCTTSCCCCCCCCTTGGGEEEECSCCGGG-CC--CCCCS
T ss_pred CCCEEEEeccC-CCHHHHHHHHc-----CCEEEEECc-h-hhhhhhhchhhhhhcCCCeEEEeccCcHhh-CC--CCCcC
Confidence 46799999997 99999988863 799999999 7 433332221 1 122278999 999887 44 46899
Q ss_pred EEEEcCCCCCccH-------HHHHHHHHhhcCCCCCCE--EEEEe
Q 042616 115 FVLIDCNIDIDGH-------KNVFRAAKESVMHGSGAG--VIVGY 150 (220)
Q Consensus 115 ~VfiD~~k~~~~y-------~~~l~~l~~~~~L~~~Gg--viv~d 150 (220)
+|+.|...-...+ ...++.+.+. |+| || .++++
T Consensus 151 ~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~--Lkp-GG~~~~v~~ 192 (276)
T 2wa2_A 151 TVLCDIGESNPTAAVEASRTLTVLNVISRW--LEY-NQGCGFCVK 192 (276)
T ss_dssp EEEECCCCCCSCHHHHHHHHHHHHHHHHHH--HHH-STTCEEEEE
T ss_pred EEEECCCcCCCchhhhHHHHHHHHHHHHHH--hcc-CCCcEEEEE
Confidence 9999975200121 1367778787 776 77 77765
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.7e-06 Score=72.85 Aligned_cols=114 Identities=10% Similarity=-0.049 Sum_probs=76.5
Q ss_pred hHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhh
Q 042616 27 DVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLL 106 (220)
Q Consensus 27 ~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L 106 (220)
.--+|...+.....|.+||||||| +|..++.++ + ..+++++|+| +.+++.+++++.....+..+.+.|.....
T Consensus 92 ~ld~fY~~i~~~~~p~~VLDlGCG-~gpLal~~~----~-~~~y~a~DId-~~~i~~ar~~~~~~g~~~~~~v~D~~~~~ 164 (253)
T 3frh_A 92 ELDTLYDFIFSAETPRRVLDIACG-LNPLALYER----G-IASVWGCDIH-QGLGDVITPFAREKDWDFTFALQDVLCAP 164 (253)
T ss_dssp GHHHHHHHHTSSCCCSEEEEETCT-TTHHHHHHT----T-CSEEEEEESB-HHHHHHHHHHHHHTTCEEEEEECCTTTSC
T ss_pred hHHHHHHHHhcCCCCCeEEEecCC-ccHHHHHhc----c-CCeEEEEeCC-HHHHHHHHHHHHhcCCCceEEEeecccCC
Confidence 334455544444569999999996 898887655 2 7899999999 99999999998743357899999987654
Q ss_pred hhcCCCccEEEEcCC-C--CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 107 MGDYRGADFVLIDCN-I--DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~-k--~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+ .+++|+|++--- + +...-...++.+. . |++ ++++|.-.+-
T Consensus 165 ~--~~~~DvvLllk~lh~LE~q~~~~~~~ll~-a--L~~-~~vvVsfPtk 208 (253)
T 3frh_A 165 P--AEAGDLALIFKLLPLLEREQAGSAMALLQ-S--LNT-PRMAVSFPTR 208 (253)
T ss_dssp C--CCBCSEEEEESCHHHHHHHSTTHHHHHHH-H--CBC-SEEEEEEECC
T ss_pred C--CCCcchHHHHHHHHHhhhhchhhHHHHHH-H--hcC-CCEEEEcChH
Confidence 4 368999975411 1 0001112333333 4 666 6777765543
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.1e-07 Score=80.02 Aligned_cols=114 Identities=8% Similarity=-0.077 Sum_probs=72.9
Q ss_pred CCChhHHHHHHHHHh--hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHh---cccCCcEEE
Q 042616 23 GKEPDVGEFISALAA--GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSL---GRYANCIEF 97 (220)
Q Consensus 23 ~~~p~~~~~L~~La~--~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l---~g~~~~Ve~ 97 (220)
........+...+.. ..+.++|||+||| +|..|..++.. ++|++||.+ + ++..+++.. +....+|++
T Consensus 55 ~~sR~a~KL~~i~~~~~~~~g~~VLDlGcG-tG~~s~~la~~-----~~V~gvD~s-~-m~~~a~~~~~~~~~~~~~v~~ 126 (265)
T 2oxt_A 55 SVSRGTAKLAWMEERGYVELTGRVVDLGCG-RGGWSYYAASR-----PHVMDVRAY-T-LGVGGHEVPRITESYGWNIVK 126 (265)
T ss_dssp CSSTHHHHHHHHHHHTSCCCCEEEEEESCT-TSHHHHHHHTS-----TTEEEEEEE-C-CCCSSCCCCCCCCBTTGGGEE
T ss_pred ccchHHHHHHHHHHcCCCCCCCEEEEeCcC-CCHHHHHHHHc-----CcEEEEECc-h-hhhhhhhhhhhhhccCCCeEE
Confidence 344444333333332 2346799999996 99999888763 799999999 6 332222211 112226899
Q ss_pred E--EcchhhhhhhcCCCccEEEEcCCCCCccH-------HHHHHHHHhhcCCCCCCE--EEEEe
Q 042616 98 V--KGDAQKLLMGDYRGADFVLIDCNIDIDGH-------KNVFRAAKESVMHGSGAG--VIVGY 150 (220)
Q Consensus 98 v--~gda~~~L~~~~~~~D~VfiD~~k~~~~y-------~~~l~~l~~~~~L~~~Gg--viv~d 150 (220)
+ ++|+.+ ++ .++||+|+.|...-...+ ...++.+.+. |+| || .++++
T Consensus 127 ~~~~~D~~~-l~--~~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~--Lkp-GG~~~fv~k 184 (265)
T 2oxt_A 127 FKSRVDIHT-LP--VERTDVIMCDVGESSPKWSVESERTIKILELLEKW--KVK-NPSADFVVK 184 (265)
T ss_dssp EECSCCTTT-SC--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHH--HHH-CTTCEEEEE
T ss_pred EecccCHhH-CC--CCCCcEEEEeCcccCCccchhHHHHHHHHHHHHHH--hcc-CCCeEEEEE
Confidence 9 899887 33 468999999975211221 1367778787 876 77 77775
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.33 E-value=6.7e-08 Score=81.40 Aligned_cols=92 Identities=10% Similarity=-0.021 Sum_probs=71.7
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA 102 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda 102 (220)
.+.+...+.+...+...+..+||||||| +|..|..|+.. +++|++||.+ +.+++.|+++++. .++++++++|+
T Consensus 12 l~~~~~~~~i~~~~~~~~~~~VLDiG~G-~G~~~~~l~~~----~~~v~~id~~-~~~~~~a~~~~~~-~~~v~~~~~D~ 84 (245)
T 1yub_A 12 LTSEKVLNQIIKQLNLKETDTVYEIGTG-KGHLTTKLAKI----SKQVTSIELD-SHLFNLSSEKLKL-NTRVTLIHQDI 84 (245)
T ss_dssp CCCTTTHHHHHHHCCCCSSEEEEECSCC-CSSCSHHHHHH----SSEEEESSSS-CSSSSSSSCTTTT-CSEEEECCSCC
T ss_pred CCCHHHHHHHHHhcCCCCCCEEEEEeCC-CCHHHHHHHHh----CCeEEEEECC-HHHHHHHHHHhcc-CCceEEEECCh
Confidence 5667777777777677778899999997 99999999975 4799999999 9999999888763 36899999999
Q ss_pred hhhhhhcCCCccEEEEcCCC
Q 042616 103 QKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k 122 (220)
.+.-....++| .|+.+.+-
T Consensus 85 ~~~~~~~~~~f-~vv~n~Py 103 (245)
T 1yub_A 85 LQFQFPNKQRY-KIVGNIPY 103 (245)
T ss_dssp TTTTCCCSSEE-EEEEECCS
T ss_pred hhcCcccCCCc-EEEEeCCc
Confidence 87531112467 67766654
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.2e-07 Score=80.45 Aligned_cols=112 Identities=11% Similarity=0.009 Sum_probs=71.7
Q ss_pred CChhHHHHHHHHHh--hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeC----CchhHHHHHHHHhccc-CCcEE
Q 042616 24 KEPDVGEFISALAA--GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILS----GVIGDIDASKKSLGRY-ANCIE 96 (220)
Q Consensus 24 ~~p~~~~~L~~La~--~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~----d~~~~~~~Ar~~l~g~-~~~Ve 96 (220)
.....-+++..+.. ..+.++|||+||| +|..|..|++. ++|++||. . +..++.+ ..+.. .++|+
T Consensus 64 ~sR~a~KL~~i~~~~~~~~g~~VLDlGcG-~G~~s~~la~~-----~~V~gvD~~~~~~-~~~~~~~--~~~~~~~~~v~ 134 (305)
T 2p41_A 64 VSRGSAKLRWFVERNLVTPEGKVVDLGCG-RGGWSYYCGGL-----KNVREVKGLTKGG-PGHEEPI--PMSTYGWNLVR 134 (305)
T ss_dssp SSTHHHHHHHHHHTTSSCCCEEEEEETCT-TSHHHHHHHTS-----TTEEEEEEECCCS-TTSCCCC--CCCSTTGGGEE
T ss_pred cccHHHHHHHHHHcCCCCCCCEEEEEcCC-CCHHHHHHHhc-----CCEEEEeccccCc-hhHHHHH--HhhhcCCCCeE
Confidence 44444444443332 2345799999996 99999988863 68999998 4 3322111 11211 15699
Q ss_pred EEEc-chhhhhhhcCCCccEEEEcCCCCCccH----H---HHHHHHHhhcCCCCCCEEEEEe
Q 042616 97 FVKG-DAQKLLMGDYRGADFVLIDCNIDIDGH----K---NVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 97 ~v~g-da~~~L~~~~~~~D~VfiD~~k~~~~y----~---~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++++ |+.+. + ..+||+|+.|.......+ . ..++.+.+. |+| ||.++++
T Consensus 135 ~~~~~D~~~l-~--~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~--Lkp-GG~~v~k 190 (305)
T 2p41_A 135 LQSGVDVFFI-P--PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENW--LSN-NTQFCVK 190 (305)
T ss_dssp EECSCCTTTS-C--CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHH--CCT-TCEEEEE
T ss_pred EEeccccccC-C--cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHH--hCC-CCEEEEE
Confidence 9999 88764 3 368999999976410111 1 457777787 876 8888885
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-06 Score=78.16 Aligned_cols=99 Identities=14% Similarity=0.066 Sum_probs=72.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.+..+||||||| +|..+..|++..+ +.+++.+|. +..++.|++. ++|+++.+|..+-+| .. |+|++
T Consensus 200 ~~~~~vlDvG~G-~G~~~~~l~~~~p--~~~~~~~D~--~~~~~~a~~~-----~~v~~~~~D~~~~~p---~~-D~v~~ 265 (364)
T 3p9c_A 200 EGLGTLVDVGGG-VGATVAAIAAHYP--TIKGVNFDL--PHVISEAPQF-----PGVTHVGGDMFKEVP---SG-DTILM 265 (364)
T ss_dssp TTCSEEEEETCT-TSHHHHHHHHHCT--TCEEEEEEC--HHHHTTCCCC-----TTEEEEECCTTTCCC---CC-SEEEE
T ss_pred cCCCEEEEeCCC-CCHHHHHHHHHCC--CCeEEEecC--HHHHHhhhhc-----CCeEEEeCCcCCCCC---CC-CEEEe
Confidence 346899999986 9999999999875 478999998 5666555432 689999999987444 23 99998
Q ss_pred cCCCC---CccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 119 DCNID---IDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 119 D~~k~---~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
-.-.+ ..+...+++.+.+. |+|.|-+++.|.+.
T Consensus 266 ~~vlh~~~d~~~~~~L~~~~~~--L~pgG~l~i~e~~~ 301 (364)
T 3p9c_A 266 KWILHDWSDQHCATLLKNCYDA--LPAHGKVVLVQCIL 301 (364)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHH--SCTTCEEEEEECCB
T ss_pred hHHhccCCHHHHHHHHHHHHHH--cCCCCEEEEEEecc
Confidence 55441 03346789999999 88744455655554
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-06 Score=77.86 Aligned_cols=98 Identities=15% Similarity=0.072 Sum_probs=71.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+..+||||||| +|..+..|++..+ +.+++.+|. +..++.|++. .+|+++.+|..+.+| .. |+|++-
T Consensus 203 ~~~~vlDvG~G-~G~~~~~l~~~~p--~~~~~~~D~--~~~~~~a~~~-----~~v~~~~~d~~~~~p---~~-D~v~~~ 268 (368)
T 3reo_A 203 GLTTIVDVGGG-TGAVASMIVAKYP--SINAINFDL--PHVIQDAPAF-----SGVEHLGGDMFDGVP---KG-DAIFIK 268 (368)
T ss_dssp TCSEEEEETCT-TSHHHHHHHHHCT--TCEEEEEEC--HHHHTTCCCC-----TTEEEEECCTTTCCC---CC-SEEEEE
T ss_pred CCCEEEEeCCC-cCHHHHHHHHhCC--CCEEEEEeh--HHHHHhhhhc-----CCCEEEecCCCCCCC---CC-CEEEEe
Confidence 46899999996 9999999999875 578999998 5666555432 579999999987444 23 999986
Q ss_pred CCCCC---ccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 120 CNIDI---DGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 120 ~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.-.+. .+...+++.+.+. |+|.|-+++.|.+.
T Consensus 269 ~vlh~~~~~~~~~~l~~~~~~--L~pgG~l~i~e~~~ 303 (368)
T 3reo_A 269 WICHDWSDEHCLKLLKNCYAA--LPDHGKVIVAEYIL 303 (368)
T ss_dssp SCGGGBCHHHHHHHHHHHHHH--SCTTCEEEEEECCC
T ss_pred chhhcCCHHHHHHHHHHHHHH--cCCCCEEEEEEecc
Confidence 54410 2335779999998 88744455665554
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-06 Score=84.18 Aligned_cols=101 Identities=13% Similarity=0.141 Sum_probs=74.6
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCc--EEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGG--RVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~g--rV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+.|+++||| +|......+.|+...+. +|++||.+ + ++..|++..+ ++.++|++++||.+++ .+.+++|+|
T Consensus 358 ~~vVldVGaG-rGpLv~~al~A~a~~~~~vkVyAVEkn-p-~A~~a~~~v~~N~~~dkVtVI~gd~eev--~LPEKVDII 432 (637)
T 4gqb_A 358 VQVLMVLGAG-RGPLVNASLRAAKQADRRIKLYAVEKN-P-NAVVTLENWQFEEWGSQVTVVSSDMREW--VAPEKADII 432 (637)
T ss_dssp EEEEEEESCT-TSHHHHHHHHHHHHTTCEEEEEEEESC-H-HHHHHHHHHHHHTTGGGEEEEESCTTTC--CCSSCEEEE
T ss_pred CcEEEEECCC-CcHHHHHHHHHHHhcCCCcEEEEEECC-H-HHHHHHHHHHhccCCCeEEEEeCcceec--cCCcccCEE
Confidence 4578999997 99886665555554333 68999999 6 6777888776 7889999999999986 335789999
Q ss_pred EEc---CCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 117 LID---CNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fiD---~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+-. .--.++.-++++....+. |+| ||+++=
T Consensus 433 VSEwMG~fLl~E~mlevL~Ardr~--LKP-gGimiP 465 (637)
T 4gqb_A 433 VSELLGSFADNELSPECLDGAQHF--LKD-DGVSIP 465 (637)
T ss_dssp ECCCCBTTBGGGCHHHHHHHHGGG--EEE-EEEEES
T ss_pred EEEcCcccccccCCHHHHHHHHHh--cCC-CcEEcc
Confidence 833 222224557788877777 876 888753
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.8e-06 Score=74.88 Aligned_cols=117 Identities=10% Similarity=0.047 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHhh-CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh
Q 042616 26 PDVGEFISALAAG-NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK 104 (220)
Q Consensus 26 p~~~~~L~~La~~-~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~ 104 (220)
|..-+|...+... ..|.+||||||| .|..++.++...+ ..+++++|+| +.+++.+++|+..+.-..++.+.|...
T Consensus 117 p~lD~fY~~i~~~i~~p~~VLDLGCG-~GpLAl~~~~~~p--~a~y~a~DId-~~~le~a~~~l~~~g~~~~~~v~D~~~ 192 (281)
T 3lcv_B 117 PHLDEFYRELFRHLPRPNTLRDLACG-LNPLAAPWMGLPA--ETVYIASDID-ARLVGFVDEALTRLNVPHRTNVADLLE 192 (281)
T ss_dssp GGHHHHHHHHGGGSCCCSEEEETTCT-TGGGCCTTTTCCT--TCEEEEEESB-HHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred HhHHHHHHHHHhccCCCceeeeeccC-ccHHHHHHHhhCC--CCEEEEEeCC-HHHHHHHHHHHHhcCCCceEEEeeecc
Confidence 4445565555554 458999999997 9999988776433 6899999999 999999999997322347888888766
Q ss_pred hhhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 105 LLMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
-.| ..+||++++---- +...=...|+ +... |++ ++++|.-.+
T Consensus 193 ~~p--~~~~DvaL~lkti~~Le~q~kg~g~~-ll~a--L~~-~~vvVSfp~ 237 (281)
T 3lcv_B 193 DRL--DEPADVTLLLKTLPCLETQQRGSGWE-VIDI--VNS-PNIVVTFPT 237 (281)
T ss_dssp SCC--CSCCSEEEETTCHHHHHHHSTTHHHH-HHHH--SSC-SEEEEEEEC
T ss_pred cCC--CCCcchHHHHHHHHHhhhhhhHHHHH-HHHH--hCC-CCEEEeccc
Confidence 544 4789999854322 0000112344 4444 666 888887777
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=9.1e-06 Score=78.79 Aligned_cols=97 Identities=10% Similarity=-0.035 Sum_probs=74.4
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcC---------------------------------------
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAAR--------------------------------------- 64 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~--------------------------------------- 64 (220)
+.+..+..|-.++.-.+...+||.+|| +|...+.+|..+.
T Consensus 174 l~e~LAa~ll~~~~~~~~~~llDP~CG-SGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~ 252 (703)
T 3v97_A 174 IKETLAAAIVMRSGWQPGTPLLDPMCG-SGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL 252 (703)
T ss_dssp SCHHHHHHHHHHTTCCTTSCEEETTCT-TSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhhCCCCCCeEEecCCC-CcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence 445566666666555566789999997 8998887665431
Q ss_pred -CCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcC-CCccEEEEcCCC
Q 042616 65 -QTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDY-RGADFVLIDCNI 122 (220)
Q Consensus 65 -~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~-~~~D~VfiD~~k 122 (220)
....+++++|.| +.+++.|++|+. |+.+.|+|.++|+.++.+... ++||+|+.+++-
T Consensus 253 ~~~~~~i~G~Did-~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPY 313 (703)
T 3v97_A 253 AEYSSHFYGSDSD-ARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPY 313 (703)
T ss_dssp HHCCCCEEEEESC-HHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCC
T ss_pred ccCCccEEEEECC-HHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCc
Confidence 113589999999 999999999997 887789999999998643322 379999999874
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.4e-06 Score=75.27 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=71.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.+..+||||||| +|..+..|++..+ +.+++.+|. +.+++.|++ . .+|+++.+|..+.+| .||+|++
T Consensus 187 ~~~~~vlDvG~G-~G~~~~~l~~~~p--~~~~~~~D~--~~~~~~a~~----~-~~v~~~~~d~~~~~p----~~D~v~~ 252 (352)
T 1fp2_A 187 DGLESIVDVGGG-TGTTAKIICETFP--KLKCIVFDR--PQVVENLSG----S-NNLTYVGGDMFTSIP----NADAVLL 252 (352)
T ss_dssp TTCSEEEEETCT-TSHHHHHHHHHCT--TCEEEEEEC--HHHHTTCCC----B-TTEEEEECCTTTCCC----CCSEEEE
T ss_pred ccCceEEEeCCC-ccHHHHHHHHHCC--CCeEEEeeC--HHHHhhccc----C-CCcEEEeccccCCCC----CccEEEe
Confidence 356899999996 9999999998765 579999999 577766654 2 359999999976333 4999998
Q ss_pred cCCCCC---ccHHHHHHHHHhhcCCCC---CCEEEEEecCC
Q 042616 119 DCNIDI---DGHKNVFRAAKESVMHGS---GAGVIVGYNAL 153 (220)
Q Consensus 119 D~~k~~---~~y~~~l~~l~~~~~L~~---~Ggviv~dNv~ 153 (220)
-.--.. .....+++.+.+. |+| .|-+++.+.+.
T Consensus 253 ~~~lh~~~d~~~~~~l~~~~~~--L~p~~~gG~l~i~e~~~ 291 (352)
T 1fp2_A 253 KYILHNWTDKDCLRILKKCKEA--VTNDGKRGKVTIIDMVI 291 (352)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHH--HSGGGCCCEEEEEECEE
T ss_pred ehhhccCCHHHHHHHHHHHHHh--CCCCCCCcEEEEEEeec
Confidence 654310 1223788999998 876 44455665443
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.15 E-value=3e-06 Score=82.09 Aligned_cols=105 Identities=8% Similarity=0.043 Sum_probs=74.5
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCC-----------CCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcchhhhhh-
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQ-----------TGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQKLLM- 107 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~-----------~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~~L~- 107 (220)
.+.|||+||| +|..+...+.|+.. ...+|++||.+ +.+....+.... ++.++|+++.||.+++-.
T Consensus 410 ~~VVldVGaG-tGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEkn-p~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp 487 (745)
T 3ua3_A 410 TVVIYLLGGG-RGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKN-PNAIVTLKYMNVRTWKRRVTIIESDMRSLPGI 487 (745)
T ss_dssp EEEEEEESCT-TCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECC-HHHHHHHHHHHHHTTTTCSEEEESCGGGHHHH
T ss_pred CcEEEEECCC-CCHHHHHHHHHHHHhCccccccccccccEEEEEeCC-hHHHHHHHHHHhcCCCCeEEEEeCchhhcccc
Confidence 4689999997 99987654444321 12499999999 877666555554 888899999999998732
Q ss_pred ---hcCCCccEEEEcCC---CCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 108 ---GDYRGADFVLIDCN---IDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 108 ---~~~~~~D~VfiD~~---k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
...+++|+|+-..- -+++...+.++.+.+. |+| ||+++=+
T Consensus 488 ~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~--Lkp-~Gi~iP~ 533 (745)
T 3ua3_A 488 AKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGF--LKP-TTISIPQ 533 (745)
T ss_dssp HHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGG--SCT-TCEEESC
T ss_pred cccCCCCcccEEEEeccccccchhccHHHHHHHHHh--CCC-CcEEECC
Confidence 11468999985432 1225667888888887 876 8876644
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2.5e-06 Score=75.80 Aligned_cols=94 Identities=10% Similarity=0.021 Sum_probs=69.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+..+||||||| +|..+..|+...+ ..+++.+|. +.+++.|++. .+|+++.+|..+.+| .||+|++-
T Consensus 209 ~~~~vLDvG~G-~G~~~~~l~~~~~--~~~~~~~D~--~~~~~~a~~~-----~~v~~~~~d~~~~~~----~~D~v~~~ 274 (372)
T 1fp1_D 209 GISTLVDVGGG-SGRNLELIISKYP--LIKGINFDL--PQVIENAPPL-----SGIEHVGGDMFASVP----QGDAMILK 274 (372)
T ss_dssp TCSEEEEETCT-TSHHHHHHHHHCT--TCEEEEEEC--HHHHTTCCCC-----TTEEEEECCTTTCCC----CEEEEEEE
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHCC--CCeEEEeCh--HHHHHhhhhc-----CCCEEEeCCcccCCC----CCCEEEEe
Confidence 46899999996 9999999998875 468899998 5666655542 469999999977332 39999986
Q ss_pred CCCCC-c--cHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 120 CNIDI-D--GHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 120 ~~k~~-~--~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.--+. . ....+++.+.+. |+| ||.+++.
T Consensus 275 ~~lh~~~d~~~~~~l~~~~~~--L~p-gG~l~i~ 305 (372)
T 1fp1_D 275 AVCHNWSDEKCIEFLSNCHKA--LSP-NGKVIIV 305 (372)
T ss_dssp SSGGGSCHHHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred cccccCCHHHHHHHHHHHHHh--cCC-CCEEEEE
Confidence 54311 1 223789999998 887 6655543
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=8.8e-06 Score=78.15 Aligned_cols=108 Identities=13% Similarity=0.059 Sum_probs=76.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCC--------CC--cEEEEEeCCchhHHHHHHHHh--------------c-----
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQ--------TG--GRVVCILSGVIGDIDASKKSL--------------G----- 89 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~--------~~--grV~tIE~d~~~~~~~Ar~~l--------------~----- 89 (220)
.++-+|+|+|.| +|++.+.+.++..+ .. -+++++|.. |-..+..++.+ +
T Consensus 57 ~~~~~i~e~gfG-~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~-p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 134 (689)
T 3pvc_A 57 QQSCIFAETGFG-TGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKY-PLHVADLASAHARWPELASFAEQLRAQWPLP 134 (689)
T ss_dssp SSEEEEEEECCT-TSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESS-CCCHHHHHHHHTTCGGGHHHHHHHHHTCCCC
T ss_pred CCceEEEEecCc-hHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCC-CCCHHHHHHHHHhCcchhHHHHHHHHhCccc
Confidence 345789999975 99999988776421 12 468999996 64443333311 1
Q ss_pred --c-----cCC---cEEEEEcchhhhhhhc----CCCccEEEEcCCCCCccH------HHHHHHHHhhcCCCCCCEEEEE
Q 042616 90 --R-----YAN---CIEFVKGDAQKLLMGD----YRGADFVLIDCNIDIDGH------KNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 90 --g-----~~~---~Ve~v~gda~~~L~~~----~~~~D~VfiD~~k~~~~y------~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
| +.+ .++++.||+.+.|+++ ...+|.+|+|+-. ..+ .++|..+.++ +++ |+.+..
T Consensus 135 ~~~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~--p~~np~~w~~~~~~~l~~~--~~~-g~~~~t 209 (689)
T 3pvc_A 135 LAGCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFA--PAKNPDMWNEQLFNAMARM--TRP-GGTFST 209 (689)
T ss_dssp CSEEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSC--C--CCTTCSHHHHHHHHHH--EEE-EEEEEE
T ss_pred CCCceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCC--CCCChhhhhHHHHHHHHHH--hCC-CCEEEe
Confidence 1 122 4789999999999987 3679999999976 433 8889999988 765 888887
Q ss_pred ecCC
Q 042616 150 YNAL 153 (220)
Q Consensus 150 dNv~ 153 (220)
..+.
T Consensus 210 ~~~~ 213 (689)
T 3pvc_A 210 FTAA 213 (689)
T ss_dssp SCCC
T ss_pred ccCc
Confidence 6553
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.00 E-value=3e-05 Score=67.58 Aligned_cols=88 Identities=20% Similarity=0.243 Sum_probs=68.8
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh---
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--- 105 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--- 105 (220)
-+.+..| ...+...+||.++| .|--|..|++. +|+|+++|.| |++++.|++ ++. +++++++++..++
T Consensus 12 ~e~le~L-~~~~gg~~VD~T~G-~GGHS~~il~~----~g~VigiD~D-p~Ai~~A~~-L~~--~rv~lv~~~f~~l~~~ 81 (285)
T 1wg8_A 12 QEALDLL-AVRPGGVYVDATLG-GAGHARGILER----GGRVIGLDQD-PEAVARAKG-LHL--PGLTVVQGNFRHLKRH 81 (285)
T ss_dssp HHHHHHH-TCCTTCEEEETTCT-TSHHHHHHHHT----TCEEEEEESC-HHHHHHHHH-TCC--TTEEEEESCGGGHHHH
T ss_pred HHHHHhh-CCCCCCEEEEeCCC-CcHHHHHHHHC----CCEEEEEeCC-HHHHHHHHh-hcc--CCEEEEECCcchHHHH
Confidence 3445444 45667899998886 77778888875 6899999999 999999999 865 5899999999876
Q ss_pred hhhc-CCCccEEEEcCCCCCccHH
Q 042616 106 LMGD-YRGADFVLIDCNIDIDGHK 128 (220)
Q Consensus 106 L~~~-~~~~D~VfiD~~k~~~~y~ 128 (220)
|... ..++|.|+.|-.. ..++
T Consensus 82 L~~~g~~~vDgIL~DLGv--SS~Q 103 (285)
T 1wg8_A 82 LAALGVERVDGILADLGV--SSFH 103 (285)
T ss_dssp HHHTTCSCEEEEEEECSC--CHHH
T ss_pred HHHcCCCCcCEEEeCCcc--cccc
Confidence 4332 2579999999887 5443
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.5e-05 Score=70.37 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=70.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+..+||||||| +|..+..|++..+ +.+++.+|. +..++.|++ + .+|+++.+|..+-+ ..||+|++-
T Consensus 193 ~~~~vlDvG~G-~G~~~~~l~~~~p--~~~~~~~D~--~~~~~~a~~----~-~~v~~~~~d~~~~~----~~~D~v~~~ 258 (358)
T 1zg3_A 193 GLESLVDVGGG-TGGVTKLIHEIFP--HLKCTVFDQ--PQVVGNLTG----N-ENLNFVGGDMFKSI----PSADAVLLK 258 (358)
T ss_dssp TCSEEEEETCT-TSHHHHHHHHHCT--TSEEEEEEC--HHHHSSCCC----C-SSEEEEECCTTTCC----CCCSEEEEE
T ss_pred CCCEEEEECCC-cCHHHHHHHHHCC--CCeEEEecc--HHHHhhccc----C-CCcEEEeCccCCCC----CCceEEEEc
Confidence 56899999986 9999999998875 478999997 466655543 2 45999999987732 359999986
Q ss_pred CCCCC-cc--HHHHHHHHHhhcCCCC---CCEEEEEecCC
Q 042616 120 CNIDI-DG--HKNVFRAAKESVMHGS---GAGVIVGYNAL 153 (220)
Q Consensus 120 ~~k~~-~~--y~~~l~~l~~~~~L~~---~Ggviv~dNv~ 153 (220)
.--+. .+ ...+++.+.+. |+| .|-+++.+.+.
T Consensus 259 ~vlh~~~d~~~~~~l~~~~~~--L~p~~~gG~l~i~e~~~ 296 (358)
T 1zg3_A 259 WVLHDWNDEQSLKILKNSKEA--ISHKGKDGKVIIIDISI 296 (358)
T ss_dssp SCGGGSCHHHHHHHHHHHHHH--TGGGGGGCEEEEEECEE
T ss_pred ccccCCCHHHHHHHHHHHHHh--CCCCCCCcEEEEEEecc
Confidence 54310 12 34888999998 876 44456666443
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.94 E-value=9.6e-06 Score=76.49 Aligned_cols=100 Identities=9% Similarity=-0.096 Sum_probs=74.9
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCC-------------CcEEEEEeCCchhHHHHHHH
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQT-------------GGRVVCILSGVIGDIDASKK 86 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~-------------~grV~tIE~d~~~~~~~Ar~ 86 (220)
++...++.+.++|..++...+. +|+|.+|| +|.+.+.++..+... ..+++++|.+ +..++.|+.
T Consensus 225 G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCG-SG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid-~~~~~lA~~ 301 (544)
T 3khk_A 225 GQYYTPKSIVTLIVEMLEPYKG-RVYDPAMG-SGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESN-PTTWKLAAM 301 (544)
T ss_dssp TTTCCCHHHHHHHHHHHCCCSE-EEEESSCT-TCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCC-HHHHHHHHH
T ss_pred CeEeCCHHHHHHHHHHHhcCCC-eEeCcccC-cCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCC-HHHHHHHHH
Confidence 5567888889999999876554 89999997 888777665433210 2589999999 999999999
Q ss_pred Hhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 87 SLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 87 ~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
|+. ++..++.+++||....-......||+|+.+++-
T Consensus 302 Nl~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf 339 (544)
T 3khk_A 302 NMVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPF 339 (544)
T ss_dssp HHHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCS
T ss_pred HHHHhCCCcccceeccchhcCcccccccccEEEECCCc
Confidence 886 765566668898765322213689999987765
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=97.84 E-value=1.7e-05 Score=62.47 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=65.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhh--cCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMG--DYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~--~~~~~D~V 116 (220)
.+..+||++||| . ++||.+ +++++.|++.+. .+++++++|+.+.... ..++||+|
T Consensus 11 ~~g~~vL~~~~g-~------------------v~vD~s-~~ml~~a~~~~~---~~~~~~~~d~~~~~~~~~~~~~fD~V 67 (176)
T 2ld4_A 11 SAGQFVAVVWDK-S------------------SPVEAL-KGLVDKLQALTG---NEGRVSVENIKQLLQSAHKESSFDII 67 (176)
T ss_dssp CTTSEEEEEECT-T------------------SCHHHH-HHHHHHHHHHTT---TTSEEEEEEGGGGGGGCCCSSCEEEE
T ss_pred CCCCEEEEecCC-c------------------eeeeCC-HHHHHHHHHhcc---cCcEEEEechhcCccccCCCCCEeEE
Confidence 457899999986 2 238999 999999998864 2489999999875321 24689999
Q ss_pred EEcCCC-CC-ccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 117 LIDCNI-DI-DGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 117 fiD~~k-~~-~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+.-... .- .+....++.+.+. |+| ||.+++.+.
T Consensus 68 ~~~~~l~~~~~~~~~~l~~~~r~--Lkp-gG~l~~~~~ 102 (176)
T 2ld4_A 68 LSGLVPGSTTLHSAEILAEIARI--LRP-GGCLFLKEP 102 (176)
T ss_dssp EECCSTTCCCCCCHHHHHHHHHH--EEE-EEEEEEEEE
T ss_pred EECChhhhcccCHHHHHHHHHHH--CCC-CEEEEEEcc
Confidence 974322 11 3558899999999 887 887777543
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.78 E-value=7.7e-05 Score=70.31 Aligned_cols=132 Identities=12% Similarity=-0.007 Sum_probs=96.2
Q ss_pred CCCCCChhHHHHHHHHHh----hCCCCEEEEEcCCchHHHHHHHHHHcCCC-CcEEEEEeCCchhHHHHHHHHhc--ccC
Q 042616 20 GKRGKEPDVGEFISALAA----GNNAQLIVMACSSIAVSRTLALVAAARQT-GGRVVCILSGVIGDIDASKKSLG--RYA 92 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~----~~~a~~ILEIGtg~~G~sTl~LA~A~~~~-~grV~tIE~d~~~~~~~Ar~~l~--g~~ 92 (220)
++...++.+.++|..++. ..+..+|+|.+|| +|.+.+.++..+... ...++++|.+ +..++.|+.|+. |+.
T Consensus 197 G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCG-SG~fLi~a~~~l~~~~~~~i~G~Eid-~~~~~lA~~Nl~l~gi~ 274 (542)
T 3lkd_A 197 GEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMG-SGSLLLNAKRYSRQPQTVVYFGQELN-TSTYNLARMNMILHGVP 274 (542)
T ss_dssp SSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCT-TSTTGGGHHHHCSCTTTCEEEEEESC-HHHHHHHHHHHHHTTCC
T ss_pred CeecccHHHHHHHHHHHhcccCCCCCCEEeecccc-hhHHHHHHHHHHHhccCceEEEEECc-HHHHHHHHHHHHHcCCC
Confidence 566788889999999998 4566799999997 898888887776432 4689999999 999999999885 664
Q ss_pred -CcEEEEEcchhhhh-hhc-CCCccEEEEcCCCCC-----------cc---H----------HHHHHHHHhhcCCC-CCC
Q 042616 93 -NCIEFVKGDAQKLL-MGD-YRGADFVLIDCNIDI-----------DG---H----------KNVFRAAKESVMHG-SGA 144 (220)
Q Consensus 93 -~~Ve~v~gda~~~L-~~~-~~~~D~VfiD~~k~~-----------~~---y----------~~~l~~l~~~~~L~-~~G 144 (220)
+++.++++|....- |.. ...||+|+.+++-.. .. | ..++..+..+ |+ + |
T Consensus 275 ~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~--Lk~~-g 351 (542)
T 3lkd_A 275 IENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYH--LKQD-N 351 (542)
T ss_dssp GGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHT--BCTT-T
T ss_pred cCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHH--hCCC-c
Confidence 57899999987641 221 467999997755310 00 1 2367778887 87 6 5
Q ss_pred EE---EEEecCCCCC
Q 042616 145 GV---IVGYNALPKG 156 (220)
Q Consensus 145 gv---iv~dNv~~~g 156 (220)
|. |+-+++++.+
T Consensus 352 Gr~a~VlP~g~Lf~~ 366 (542)
T 3lkd_A 352 GVMAIVLPHGVLFRG 366 (542)
T ss_dssp CEEEEEEETHHHHCC
T ss_pred eeEEEEecchHhhCC
Confidence 44 4555566654
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.71 E-value=9.8e-05 Score=58.58 Aligned_cols=88 Identities=15% Similarity=0.079 Sum_probs=63.4
Q ss_pred HhhCC-CCEEEEEcCCchH-HHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCc
Q 042616 36 AAGNN-AQLIVMACSSIAV-SRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGA 113 (220)
Q Consensus 36 a~~~~-a~~ILEIGtg~~G-~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~ 113 (220)
++..+ +.+||||||| .| ..+++|++-. +-.|+++|.+ |..++ ++.+|..+-...+..+|
T Consensus 30 ~~~~~~~~rVlEVG~G-~g~~vA~~La~~~---g~~V~atDIn-p~Av~--------------~v~dDiF~P~~~~Y~~~ 90 (153)
T 2k4m_A 30 IRCSGPGTRVVEVGAG-RFLYVSDYIRKHS---KVDLVLTDIK-PSHGG--------------IVRDDITSPRMEIYRGA 90 (153)
T ss_dssp HHHSCSSSEEEEETCT-TCCHHHHHHHHHS---CCEEEEECSS-CSSTT--------------EECCCSSSCCHHHHTTE
T ss_pred HhcCCCCCcEEEEccC-CChHHHHHHHHhC---CCeEEEEECC-ccccc--------------eEEccCCCCcccccCCc
Confidence 33433 5799999997 89 5899998631 6689999999 76654 77777765333334689
Q ss_pred cEE-EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 114 DFV-LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 114 D~V-fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+| -+-++. +.....++.+++. |+-+++.
T Consensus 91 DLIYsirPP~--El~~~i~~lA~~v------~adliI~ 120 (153)
T 2k4m_A 91 ALIYSIRPPA--EIHSSLMRVADAV------GARLIIK 120 (153)
T ss_dssp EEEEEESCCT--TTHHHHHHHHHHH------TCEEEEE
T ss_pred CEEEEcCCCH--HHHHHHHHHHHHc------CCCEEEE
Confidence 999 678877 7777777777775 5555554
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00025 Score=69.84 Aligned_cols=101 Identities=11% Similarity=0.089 Sum_probs=71.0
Q ss_pred CCCCCChhHHHHHHHHHhh------CCCCEEEEEcCCchHHHHHHHHHHcCCC-CcEEEEEeCCchhHHHHH--HHHhc-
Q 042616 20 GKRGKEPDVGEFISALAAG------NNAQLIVMACSSIAVSRTLALVAAARQT-GGRVVCILSGVIGDIDAS--KKSLG- 89 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~------~~a~~ILEIGtg~~G~sTl~LA~A~~~~-~grV~tIE~d~~~~~~~A--r~~l~- 89 (220)
++...++..++++..+|.. .+..+|||.||| +|...+.++..++.. ..+++++|.| +..++.| +.++.
T Consensus 295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCG-SG~FLIaaA~~l~ei~~~~IyGvEID-p~Al~LAK~RlNL~l 372 (878)
T 3s1s_A 295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAG-SGNLLATVSAGFNNVMPRQIWANDIE-TLFLELLSIRLGLLF 372 (878)
T ss_dssp BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCT-TSHHHHHHHHTSTTCCGGGEEEECSC-GGGHHHHHHHHHTTS
T ss_pred ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCC-ccHHHHHHHHHhcccCCCeEEEEECC-HHHHHHHHHHHHHHH
Confidence 4567888889999888432 136799999997 999988888766421 3679999999 9999999 66653
Q ss_pred -ccC---CcEEEEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 90 -RYA---NCIEFVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 90 -g~~---~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
.+. +...+..+|..+.-+.....||+|+.+++-
T Consensus 373 N~LlhGi~~~~I~~dD~L~~~~~~~~kFDVVIgNPPY 409 (878)
T 3s1s_A 373 PQLVSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPY 409 (878)
T ss_dssp TTTCBTTBCCEEECCCGGGCCGGGGTTEEEEEECCBC
T ss_pred hhhhcCCCcceEEecchhcccccccCCCCEEEECCCc
Confidence 121 223555666655221224689999988765
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00019 Score=64.08 Aligned_cols=87 Identities=14% Similarity=0.157 Sum_probs=65.2
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhh--
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLL-- 106 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L-- 106 (220)
.|.+..| ...+...+||..+| .|--|..|++.+.+ .|+|+++|.| +++++.|+ .+. .+++++++++..++.
T Consensus 47 ~Evl~~L-~i~pggiyVD~TlG-~GGHS~~iL~~lg~-~GrVig~D~D-p~Al~~A~-rL~--~~Rv~lv~~nF~~l~~~ 119 (347)
T 3tka_A 47 DEAVNGL-NIRPDGIYIDGTFG-RGGHSRLILSQLGE-EGRLLAIDRD-PQAIAVAK-TID--DPRFSIIHGPFSALGEY 119 (347)
T ss_dssp HHHHHHT-CCCTTCEEEESCCT-TSHHHHHHHTTCCT-TCEEEEEESC-HHHHHHHT-TCC--CTTEEEEESCGGGHHHH
T ss_pred HHHHHhh-CCCCCCEEEEeCcC-CCHHHHHHHHhCCC-CCEEEEEECC-HHHHHHHH-hhc--CCcEEEEeCCHHHHHHH
Confidence 3444444 34556789997655 77788888888766 7999999999 99999985 442 378999999987754
Q ss_pred -hhcC--CCccEEEEcCCC
Q 042616 107 -MGDY--RGADFVLIDCNI 122 (220)
Q Consensus 107 -~~~~--~~~D~VfiD~~k 122 (220)
+... +++|.|++|-..
T Consensus 120 L~~~g~~~~vDgILfDLGV 138 (347)
T 3tka_A 120 VAERDLIGKIDGILLDLGV 138 (347)
T ss_dssp HHHTTCTTCEEEEEEECSC
T ss_pred HHhcCCCCcccEEEECCcc
Confidence 3321 369999999887
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00027 Score=63.26 Aligned_cols=80 Identities=8% Similarity=-0.059 Sum_probs=63.1
Q ss_pred CCC-CCChhHHHHHHHHHhhCC------CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccC
Q 042616 20 GKR-GKEPDVGEFISALAAGNN------AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYA 92 (220)
Q Consensus 20 ~~~-~~~p~~~~~L~~La~~~~------a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~ 92 (220)
||. .+.+..++-|...+...+ ...|||||.| .|..|..|+.... ..+|++||+| +..+...++.+ . .
T Consensus 31 GQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG-~G~LT~~Ll~~~~--~~~vvavE~D-~~l~~~L~~~~-~-~ 104 (353)
T 1i4w_A 31 GFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPG-VGIQSAIFYNKYC--PRQYSLLEKR-SSLYKFLNAKF-E-G 104 (353)
T ss_dssp GCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCT-TCHHHHHHHHHHC--CSEEEEECCC-HHHHHHHHHHT-T-T
T ss_pred CcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCC-CCHHHHHHHhhCC--CCEEEEEecC-HHHHHHHHHhc-c-C
Confidence 443 577888877777776553 4889999997 9999999998543 3699999999 88888877766 3 3
Q ss_pred CcEEEEEcchhhh
Q 042616 93 NCIEFVKGDAQKL 105 (220)
Q Consensus 93 ~~Ve~v~gda~~~ 105 (220)
++++++++|+.++
T Consensus 105 ~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 105 SPLQILKRDPYDW 117 (353)
T ss_dssp SSCEEECSCTTCH
T ss_pred CCEEEEECCccch
Confidence 6899999999654
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0014 Score=57.54 Aligned_cols=133 Identities=18% Similarity=0.130 Sum_probs=81.3
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHH---HcCCCCcE--EEEEeCCchh---------HHHHHHHHhc---cc-CCc--EEE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVA---AARQTGGR--VVCILSGVIG---------DIDASKKSLG---RY-ANC--IEF 97 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~---A~~~~~gr--V~tIE~d~~~---------~~~~Ar~~l~---g~-~~~--Ve~ 97 (220)
..+.-+|+|+|-| +|+.++.... ...+ ..+ .+++|.+ +- ..+..+..+. .. ..+ .++
T Consensus 94 ~~~~~~IlE~GFG-TGLNfl~t~~~~~~~~~-~~~L~~iS~Ek~-pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l 170 (308)
T 3vyw_A 94 ERKVIRILDVGFG-LGYNLAVALKHLWEVNP-KLRVEIISFEKE-LLKEFPILPEPYREIHEFLLERVPEYEGERLSLKV 170 (308)
T ss_dssp HCSEEEEEEECCT-TSHHHHHHHHHHHHHCT-TCEEEEEEEESS-CCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEE
T ss_pred CCCCcEEEEeCCC-ccHHHHHHHHHHHHhCC-CcceEEEeecHH-HHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEE
Confidence 3444579999964 9998764332 2232 455 4788864 32 1222333322 11 233 578
Q ss_pred EEcchhhhhhhcCC-CccEEEEcCCCCCcc---H-HHHHHHHHhhcCCCCCCEEEEEecCCCCCCcc------ceEEEee
Q 042616 98 VKGDAQKLLMGDYR-GADFVLIDCNIDIDG---H-KNVFRAAKESVMHGSGAGVIVGYNALPKGSWR------GYKTHFL 166 (220)
Q Consensus 98 v~gda~~~L~~~~~-~~D~VfiD~~k~~~~---y-~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~~~------~~~s~~l 166 (220)
..||+.+.++++.. .+|.+|+|+--+..+ + .++|+.+.++ ++| ||+++.+-+ .|..+ +|.-.-+
T Consensus 171 ~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~--~~p-gg~laTYta--ag~VRR~L~~aGF~V~k~ 245 (308)
T 3vyw_A 171 LLGDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKER--IDE-KGYWVSYSS--SLSVRKSLLTLGFKVGSS 245 (308)
T ss_dssp EESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTT--EEE-EEEEEESCC--CHHHHHHHHHTTCEEEEE
T ss_pred EechHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHH--hCC-CcEEEEEeC--cHHHHHHHHHCCCEEEec
Confidence 89999999998754 799999998332222 2 7899999998 775 999998633 33222 4554434
Q ss_pred e-cC--CcEEEEEEe
Q 042616 167 P-IG--EGLLVTRIG 178 (220)
Q Consensus 167 P-ig--~Gl~v~~~~ 178 (220)
| .| ..|+++.+.
T Consensus 246 ~G~g~KReml~A~~~ 260 (308)
T 3vyw_A 246 REIGRKRKGTVASLK 260 (308)
T ss_dssp ECC---CEEEEEESS
T ss_pred CCCCCCCceeEEecC
Confidence 3 22 257777654
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.001 Score=57.93 Aligned_cols=102 Identities=16% Similarity=0.105 Sum_probs=68.7
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
...+.++||-+|+|++|..++.+|++. +.+|++++.+ +++.+.+++. |...-+.....+..+.+....+.+|.+
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~---Ga~Vi~~~~~-~~~~~~~~~l--Ga~~~i~~~~~~~~~~~~~~~g~~d~v 236 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAM---GLRVAAVDID-DAKLNLARRL--GAEVAVNARDTDPAAWLQKEIGGAHGV 236 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHT---TCEEEEEESC-HHHHHHHHHT--TCSEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC---CCeEEEEeCC-HHHHHHHHHc--CCCEEEeCCCcCHHHHHHHhCCCCCEE
Confidence 345678999999988999999999875 6799999999 9999888764 221111111123333332223479999
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|..... ...++.+.+. |++ ||.++.-..
T Consensus 237 id~~g~-----~~~~~~~~~~--l~~-~G~iv~~G~ 264 (340)
T 3s2e_A 237 LVTAVS-----PKAFSQAIGM--VRR-GGTIALNGL 264 (340)
T ss_dssp EESSCC-----HHHHHHHHHH--EEE-EEEEEECSC
T ss_pred EEeCCC-----HHHHHHHHHH--hcc-CCEEEEeCC
Confidence 766544 3456777777 765 888776543
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0011 Score=59.76 Aligned_cols=72 Identities=14% Similarity=0.052 Sum_probs=55.0
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
..+.+++||+|++ .|-+|-.|+.- +++|++||+. +-. ..... ..+|+++.+|+.+..+. ..++|.|+
T Consensus 209 l~~G~~vlDLGAa-PGGWT~~l~~r----g~~V~aVD~~-~l~-~~l~~-----~~~V~~~~~d~~~~~~~-~~~~D~vv 275 (375)
T 4auk_A 209 LANGMWAVDLGAC-PGGWTYQLVKR----NMWVYSVDNG-PMA-QSLMD-----TGQVTWLREDGFKFRPT-RSNISWMV 275 (375)
T ss_dssp SCTTCEEEEETCT-TCHHHHHHHHT----TCEEEEECSS-CCC-HHHHT-----TTCEEEECSCTTTCCCC-SSCEEEEE
T ss_pred CCCCCEEEEeCcC-CCHHHHHHHHC----CCEEEEEEhh-hcC-hhhcc-----CCCeEEEeCccccccCC-CCCcCEEE
Confidence 3567899999984 99999988763 8999999987 421 11111 25799999999887654 46899999
Q ss_pred EcCCC
Q 042616 118 IDCNI 122 (220)
Q Consensus 118 iD~~k 122 (220)
.|-.-
T Consensus 276 sDm~~ 280 (375)
T 4auk_A 276 CDMVE 280 (375)
T ss_dssp ECCSS
T ss_pred EcCCC
Confidence 99876
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0052 Score=53.32 Aligned_cols=107 Identities=13% Similarity=0.065 Sum_probs=70.2
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCC
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRG 112 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~ 112 (220)
.+...+.++||-+|+|+.|..++.+|+++. ...+++++.+ +++.+.|++. |....+.....+..+....+ ...
T Consensus 155 ~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G--~~~vi~~~~~-~~k~~~a~~l--Ga~~~i~~~~~~~~~~~~~~~~~~g 229 (346)
T 4a2c_A 155 LAQGCENKNVIIIGAGTIGLLAIQCAVALG--AKSVTAIDIS-SEKLALAKSF--GAMQTFNSSEMSAPQMQSVLRELRF 229 (346)
T ss_dssp HTTCCTTSEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESC-HHHHHHHHHT--TCSEEEETTTSCHHHHHHHHGGGCS
T ss_pred HhccCCCCEEEEECCCCcchHHHHHHHHcC--CcEEEEEech-HHHHHHHHHc--CCeEEEeCCCCCHHHHHHhhcccCC
Confidence 344566799999999889999999998863 3567999999 9999988875 22111222223444433322 345
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+|+||-.... ...++.+.+. +++ ||.++......
T Consensus 230 ~d~v~d~~G~-----~~~~~~~~~~--l~~-~G~~v~~g~~~ 263 (346)
T 4a2c_A 230 NQLILETAGV-----PQTVELAVEI--AGP-HAQLALVGTLH 263 (346)
T ss_dssp SEEEEECSCS-----HHHHHHHHHH--CCT-TCEEEECCCCS
T ss_pred cccccccccc-----cchhhhhhhe--ecC-CeEEEEEeccC
Confidence 7776644433 4567777777 765 78777765554
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.017 Score=50.59 Aligned_cols=99 Identities=13% Similarity=0.066 Sum_probs=65.7
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc---hhh---hhhhc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGD---AQK---LLMGD 109 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd---a~~---~L~~~ 109 (220)
...+.++||.+|+|++|..++.||+++ +. +|++++.+ +++.+.+++. |. + .++..+ ..+ .+...
T Consensus 168 ~~~~g~~VlV~GaG~vG~~aiqlak~~---Ga~~Vi~~~~~-~~~~~~a~~l--Ga-~--~vi~~~~~~~~~~~~~i~~~ 238 (356)
T 1pl8_A 168 GVTLGHKVLVCGAGPIGMVTLLVAKAM---GAAQVVVTDLS-ATRLSKAKEI--GA-D--LVLQISKESPQEIARKVEGQ 238 (356)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT---TCSEEEEEESC-HHHHHHHHHT--TC-S--EEEECSSCCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCC-HHHHHHHHHh--CC-C--EEEcCcccccchHHHHHHHH
Confidence 455678999999988999999999875 55 99999999 8888888753 22 2 222222 122 22121
Q ss_pred -CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 110 -YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 110 -~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
...+|+||--... ...++.+.+. |++ ||.++.-..
T Consensus 239 ~~~g~D~vid~~g~-----~~~~~~~~~~--l~~-~G~iv~~G~ 274 (356)
T 1pl8_A 239 LGCKPEVTIECTGA-----EASIQAGIYA--TRS-GGTLVLVGL 274 (356)
T ss_dssp HTSCCSEEEECSCC-----HHHHHHHHHH--SCT-TCEEEECSC
T ss_pred hCCCCCEEEECCCC-----hHHHHHHHHH--hcC-CCEEEEEec
Confidence 2579998744333 3456777777 766 777776543
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0081 Score=52.13 Aligned_cols=103 Identities=12% Similarity=0.045 Sum_probs=69.0
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcC--CCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDY--RGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~--~~~D 114 (220)
...+.++||-+|+|+.|..++.+++.+. +.+|++++.+ +++.+.+++.-. ..-+.....|..+.+..+. ..+|
T Consensus 160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~--g~~Vi~~~~~-~~r~~~~~~~Ga--~~~i~~~~~~~~~~v~~~t~g~g~d 234 (348)
T 4eez_A 160 GVKPGDWQVIFGAGGLGNLAIQYAKNVF--GAKVIAVDIN-QDKLNLAKKIGA--DVTINSGDVNPVDEIKKITGGLGVQ 234 (348)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTS--CCEEEEEESC-HHHHHHHHHTTC--SEEEEC-CCCHHHHHHHHTTSSCEE
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhC--CCEEEEEECc-HHHhhhhhhcCC--eEEEeCCCCCHHHHhhhhcCCCCce
Confidence 3456789999999878888777776543 6899999999 998888877532 1223334455555444432 4678
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.++.+... ...++..... |++ ||.++.-..
T Consensus 235 ~~~~~~~~-----~~~~~~~~~~--l~~-~G~~v~~g~ 264 (348)
T 4eez_A 235 SAIVCAVA-----RIAFEQAVAS--LKP-MGKMVAVAV 264 (348)
T ss_dssp EEEECCSC-----HHHHHHHHHT--EEE-EEEEEECCC
T ss_pred EEEEeccC-----cchhheehee--ecC-CceEEEEec
Confidence 88877665 3456677776 765 777776544
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0024 Score=55.05 Aligned_cols=45 Identities=9% Similarity=0.028 Sum_probs=38.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG 89 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~ 89 (220)
.+...|||++|| +|.+++.++. .+.++++||.+ ++.++.|+++++
T Consensus 234 ~~~~~vlD~f~G-sGt~~~~a~~----~g~~~~g~e~~-~~~~~~a~~r~~ 278 (297)
T 2zig_A 234 FVGDVVLDPFAG-TGTTLIAAAR----WGRRALGVELV-PRYAQLAKERFA 278 (297)
T ss_dssp CTTCEEEETTCT-TTHHHHHHHH----TTCEEEEEESC-HHHHHHHHHHHH
T ss_pred CCCCEEEECCCC-CCHHHHHHHH----cCCeEEEEeCC-HHHHHHHHHHHH
Confidence 567899999997 8988876554 27899999999 999999999997
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0022 Score=56.62 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=67.0
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~ 115 (220)
..+.++||.+|+|++|..++.+|+++ +. +|++++.+ +++.+.+++. |....+.....+..+.+..+ .+.+|+
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~---Ga~~Vi~~~~~-~~~~~~a~~l--Ga~~vi~~~~~~~~~~~~~~~~gg~D~ 261 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVC---GASIIIAVDIV-ESRLELAKQL--GATHVINSKTQDPVAAIKEITDGGVNF 261 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHH---TCSEEEEEESC-HHHHHHHHHH--TCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEECCC-HHHHHHHHHc--CCCEEecCCccCHHHHHHHhcCCCCcE
Confidence 44568999999988899999999876 44 79999999 9999988764 22111111112333333332 237998
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|| |+.- ....++.+.+. |++ ||.++.-...
T Consensus 262 vi-d~~g----~~~~~~~~~~~--l~~-~G~iv~~G~~ 291 (371)
T 1f8f_A 262 AL-ESTG----SPEILKQGVDA--LGI-LGKIAVVGAP 291 (371)
T ss_dssp EE-ECSC----CHHHHHHHHHT--EEE-EEEEEECCCC
T ss_pred EE-ECCC----CHHHHHHHHHH--Hhc-CCEEEEeCCC
Confidence 87 4433 23557777777 765 8887776544
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0044 Score=59.10 Aligned_cols=108 Identities=14% Similarity=0.071 Sum_probs=73.1
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCC--------CC--cEEEEEeC---CchhHHHHHHH-----------Hhc-------
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQ--------TG--GRVVCILS---GVIGDIDASKK-----------SLG------- 89 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~--------~~--grV~tIE~---d~~~~~~~Ar~-----------~l~------- 89 (220)
.-+|+|+|- |+|+..+....+..+ .. -+++++|. + ++.++.+-. .++
T Consensus 67 ~~~i~e~gf-G~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~-~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (676)
T 3ps9_A 67 LFVVAESGF-GTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLT-RADLALAHQHWPELAPWAEQLQAQWPMPLP 144 (676)
T ss_dssp EEEEEEECC-TTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCC-HHHHHHHHTTCGGGHHHHHHHHHHCCCCCS
T ss_pred ceEEEEeCC-chHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCC-HHHHHHHHHhChhhHHHHHHHHHhCcccCC
Confidence 358899996 499999887666421 12 34799999 6 555542222 211
Q ss_pred c-----cC---CcEEEEEcchhhhhhhcC----CCccEEEEcCCCCC---ccH-HHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 90 R-----YA---NCIEFVKGDAQKLLMGDY----RGADFVLIDCNIDI---DGH-KNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 90 g-----~~---~~Ve~v~gda~~~L~~~~----~~~D~VfiD~~k~~---~~y-~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+ +. -.+++..||+.+.|+++. ..||.+|+|+-... +.+ .++|..+.+. +++ ||.+....+.
T Consensus 145 ~~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~--~~~-g~~~~t~~~~ 221 (676)
T 3ps9_A 145 GCHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARL--ARP-GGTLATFTSA 221 (676)
T ss_dssp EEEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHH--EEE-EEEEEESCCC
T ss_pred CceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHH--hCC-CCEEEeccCc
Confidence 1 11 236789999999999873 67999999986411 222 7788999988 765 9998887553
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0037 Score=55.36 Aligned_cols=106 Identities=16% Similarity=0.217 Sum_probs=71.1
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhh---c-
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMG---D- 109 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~---~- 109 (220)
.+...+.++||-+|+|++|..++.+|+++ |. +|++++.+ +++.+.+++. |...-+.....|..+.+.. +
T Consensus 177 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~---Ga~~Vi~~~~~-~~~~~~a~~l--Ga~~vi~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 177 LSGIKAGSTVAILGGGVIGLLTVQLARLA---GATTVILSTRQ-ATKRRLAEEV--GATATVDPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHT---TCSEEEEECSC-HHHHHHHHHH--TCSEEECTTSSCHHHHHHSTTSSS
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCC-HHHHHHHHHc--CCCEEECCCCcCHHHHHHhhhhcc
Confidence 34556789999999998999999999875 44 99999999 9999888874 2211121122344444433 2
Q ss_pred CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 110 YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 110 ~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.+.+|+|| |+.- ....++.+.+. |++ ||.++.-....
T Consensus 251 ~gg~Dvvi-d~~G----~~~~~~~~~~~--l~~-~G~vv~~G~~~ 287 (370)
T 4ej6_A 251 PGGVDVVI-ECAG----VAETVKQSTRL--AKA-GGTVVILGVLP 287 (370)
T ss_dssp TTCEEEEE-ECSC----CHHHHHHHHHH--EEE-EEEEEECSCCC
T ss_pred CCCCCEEE-ECCC----CHHHHHHHHHH--hcc-CCEEEEEeccC
Confidence 24799987 4432 23557777777 765 88887765543
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0026 Score=50.75 Aligned_cols=100 Identities=8% Similarity=0.041 Sum_probs=61.8
Q ss_pred hCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 38 GNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 38 ~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
..+.++||.+| +|++|..++.++.+. +.+|++++.+ ++..+.+++. +....+.....+..+.+... ...+|
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~---G~~V~~~~~~-~~~~~~~~~~--g~~~~~d~~~~~~~~~~~~~~~~~~~D 109 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMI---GARIYTTAGS-DAKREMLSRL--GVEYVGDSRSVDFADEILELTDGYGVD 109 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH---TCEEEEEESS-HHHHHHHHTT--CCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHc--CCCEEeeCCcHHHHHHHHHHhCCCCCe
Confidence 34568999999 577888888777654 6799999999 8887776542 32111111112332323222 24699
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.+|--. - . ..++.+.+. +++ ||.+|.-..
T Consensus 110 ~vi~~~-g--~---~~~~~~~~~--l~~-~G~~v~~g~ 138 (198)
T 1pqw_A 110 VVLNSL-A--G---EAIQRGVQI--LAP-GGRFIELGK 138 (198)
T ss_dssp EEEECC-C--T---HHHHHHHHT--EEE-EEEEEECSC
T ss_pred EEEECC-c--h---HHHHHHHHH--hcc-CCEEEEEcC
Confidence 998433 2 2 456777777 765 888776533
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0091 Score=55.90 Aligned_cols=100 Identities=7% Similarity=-0.038 Sum_probs=74.5
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCC-----------CcEEEEEeCCchhHHHHHHHHh
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQT-----------GGRVVCILSGVIGDIDASKKSL 88 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~-----------~grV~tIE~d~~~~~~~Ar~~l 88 (220)
|+...++.+.+++..++...+..+|+|-.|| +|.+-+.....+... ...++++|.+ +..+..|+-|+
T Consensus 197 GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacG-sGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~-~~~~~la~mNl 274 (530)
T 3ufb_A 197 GEFYTPRPVVRFMVEVMDPQLGESVLDPACG-TGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAK-SLPYLLVQMNL 274 (530)
T ss_dssp CCCCCCHHHHHHHHHHHCCCTTCCEEETTCT-TTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCS-HHHHHHHHHHH
T ss_pred ceECCcHHHHHHHHHhhccCCCCEEEeCCCC-cchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhcc-HHHHHHHHHHH
Confidence 5567888899999999998888999999987 787766555444321 2469999999 99999999887
Q ss_pred c--ccCCcEEEEEcchhhh-hhhc--CCCccEEEEcCCC
Q 042616 89 G--RYANCIEFVKGDAQKL-LMGD--YRGADFVLIDCNI 122 (220)
Q Consensus 89 ~--g~~~~Ve~v~gda~~~-L~~~--~~~~D~VfiD~~k 122 (220)
- |. +...+.++|.... +... ...||+|+-.++-
T Consensus 275 ~lhg~-~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf 312 (530)
T 3ufb_A 275 LLHGL-EYPRIDPENSLRFPLREMGDKDRVDVILTNPPF 312 (530)
T ss_dssp HHHTC-SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCS
T ss_pred HhcCC-ccccccccccccCchhhhcccccceEEEecCCC
Confidence 5 65 3456778887542 1111 2479999988775
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.023 Score=49.72 Aligned_cols=102 Identities=13% Similarity=0.036 Sum_probs=68.4
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHHHhcccCCcEEEEE-----cchhhhhhhc
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKKSLGRYANCIEFVK-----GDAQKLLMGD 109 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~-----gda~~~L~~~ 109 (220)
+...+.++||-+|+|++|..++.||+++ |.+ |++++.+ +++.+.+++. .. ..+.... .+..+.+..+
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~---Ga~~Vi~~~~~-~~~~~~a~~l-~~--~~~~~~~~~~~~~~~~~~v~~~ 247 (363)
T 3m6i_A 175 AGVRLGDPVLICGAGPIGLITMLCAKAA---GACPLVITDID-EGRLKFAKEI-CP--EVVTHKVERLSAEESAKKIVES 247 (363)
T ss_dssp HTCCTTCCEEEECCSHHHHHHHHHHHHT---TCCSEEEEESC-HHHHHHHHHH-CT--TCEEEECCSCCHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCC-HHHHHHHHHh-ch--hcccccccccchHHHHHHHHHH
Confidence 3456678999999998999999999975 555 9999999 9999999987 31 2233321 2222223222
Q ss_pred --CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 110 --YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 110 --~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
...+|+||--... ...++.+.+. |++ ||.++.-..
T Consensus 248 t~g~g~Dvvid~~g~-----~~~~~~~~~~--l~~-~G~iv~~G~ 284 (363)
T 3m6i_A 248 FGGIEPAVALECTGV-----ESSIAAAIWA--VKF-GGKVFVIGV 284 (363)
T ss_dssp TSSCCCSEEEECSCC-----HHHHHHHHHH--SCT-TCEEEECCC
T ss_pred hCCCCCCEEEECCCC-----hHHHHHHHHH--hcC-CCEEEEEcc
Confidence 2479998743333 3456777777 765 777776544
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0019 Score=56.52 Aligned_cols=105 Identities=17% Similarity=0.088 Sum_probs=68.2
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCC
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRG 112 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~ 112 (220)
+...+.++||-+|+|++|..++.+|+++ +. +|++++.+ +++.+.+++.- ...-+.....+..+.+.++ ...
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~---Ga~~Vi~~~~~-~~~~~~~~~lG--a~~vi~~~~~~~~~~v~~~t~g~g 235 (352)
T 3fpc_A 162 ANIKLGDTVCVIGIGPVGLMSVAGANHL---GAGRIFAVGSR-KHCCDIALEYG--ATDIINYKNGDIVEQILKATDGKG 235 (352)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTT---TCSSEEEECCC-HHHHHHHHHHT--CCEEECGGGSCHHHHHHHHTTTCC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc---CCcEEEEECCC-HHHHHHHHHhC--CceEEcCCCcCHHHHHHHHcCCCC
Confidence 3456678999999998999999999874 44 89999999 89888888752 2111111123333333332 246
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+|+|| |+.- . ...++.+.+. |++ ||.++.-....
T Consensus 236 ~D~v~-d~~g--~--~~~~~~~~~~--l~~-~G~~v~~G~~~ 269 (352)
T 3fpc_A 236 VDKVV-IAGG--D--VHTFAQAVKM--IKP-GSDIGNVNYLG 269 (352)
T ss_dssp EEEEE-ECSS--C--TTHHHHHHHH--EEE-EEEEEECCCCC
T ss_pred CCEEE-ECCC--C--hHHHHHHHHH--Hhc-CCEEEEecccC
Confidence 99987 5443 1 2345666666 665 88887765543
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0037 Score=56.10 Aligned_cols=97 Identities=12% Similarity=-0.050 Sum_probs=71.6
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhh-c------CCCc
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMG-D------YRGA 113 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~-~------~~~~ 113 (220)
-+++|+.|| +|-.++.|..| |. .|.++|.| +.+++..+.|+. ...++++|..++.+. + ...+
T Consensus 3 ~~vidLFsG-~GGlslG~~~a----G~~~v~avE~d-~~a~~t~~~N~~----~~~~~~~DI~~~~~~~~~~~~~~~~~~ 72 (376)
T 3g7u_A 3 LNVIDLFSG-VGGLSLGAARA----GFDVKMAVEID-QHAINTHAINFP----RSLHVQEDVSLLNAEIIKGFFKNDMPI 72 (376)
T ss_dssp CEEEEETCT-TSHHHHHHHHH----TCEEEEEECSC-HHHHHHHHHHCT----TSEEECCCGGGCCHHHHHHHHCSCCCC
T ss_pred CeEEEEccC-cCHHHHHHHHC----CCcEEEEEeCC-HHHHHHHHHhCC----CCceEecChhhcCHHHHHhhcccCCCe
Confidence 479999986 89999998887 44 46799999 998888888873 456778888765322 1 2579
Q ss_pred cEEEEcCCC--------------CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 114 DFVLIDCNI--------------DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 114 D~VfiD~~k--------------~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|+|+.+.+= ++..+.++++.+... +| -++|..||-
T Consensus 73 D~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~---~P--~~~v~ENV~ 121 (376)
T 3g7u_A 73 DGIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSEL---QP--LFFLAENVP 121 (376)
T ss_dssp CEEEECCCCCTTC-------CHHHHHHHHHHHHHHHHH---CC--SEEEEEECT
T ss_pred eEEEecCCCCCcccccCCCCCCchHHHHHHHHHHHHHh---CC--CEEEEecch
Confidence 999999871 113467778888775 45 678888884
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0037 Score=55.72 Aligned_cols=106 Identities=8% Similarity=-0.009 Sum_probs=68.0
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch-hhhhhhc-C-C
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA-QKLLMGD-Y-R 111 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda-~~~L~~~-~-~ 111 (220)
+...+.++||.+|+|++|..++.+|++. +. +|++++.+ +++++.+++. |. +.+.....+. .+.+..+ . .
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~---Ga~~Vi~~~~~-~~~~~~a~~l--Ga-~~i~~~~~~~~~~~~~~~~~g~ 253 (398)
T 2dph_A 181 AGVKPGSHVYIAGAGPVGRCAAAGARLL---GAACVIVGDQN-PERLKLLSDA--GF-ETIDLRNSAPLRDQIDQILGKP 253 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHH---TCSEEEEEESC-HHHHHHHHTT--TC-EEEETTSSSCHHHHHHHHHSSS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCC-HHHHHHHHHc--CC-cEEcCCCcchHHHHHHHHhCCC
Confidence 3455678999999988899999999875 44 99999999 8988888753 32 2121111232 3333222 2 3
Q ss_pred CccEEEEcCCCCCcc-----------HHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 112 GADFVLIDCNIDIDG-----------HKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~-----------y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+|+||--... .. ....++.+.+. |++ ||.++.-...
T Consensus 254 g~Dvvid~~g~--~~~~~~~~~~~~~~~~~~~~~~~~--l~~-gG~iv~~G~~ 301 (398)
T 2dph_A 254 EVDCGVDAVGF--EAHGLGDEANTETPNGALNSLFDV--VRA-GGAIGIPGIY 301 (398)
T ss_dssp CEEEEEECSCT--TCBCSGGGTTSBCTTHHHHHHHHH--EEE-EEEEECCSCC
T ss_pred CCCEEEECCCC--ccccccccccccccHHHHHHHHHH--Hhc-CCEEEEeccc
Confidence 69998744433 21 12357777777 765 8877765443
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0032 Score=55.75 Aligned_cols=105 Identities=16% Similarity=0.119 Sum_probs=67.9
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEE--Ecchhhhhhhc-CCCcc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFV--KGDAQKLLMGD-YRGAD 114 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v--~gda~~~L~~~-~~~~D 114 (220)
..+.++||-+|+|++|..++.+|+++. ..+|++++.+ +++.+.|++. |...-+... ..+..+.+..+ .+.+|
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~G--a~~Vi~~~~~-~~~~~~a~~l--Ga~~vi~~~~~~~~~~~~i~~~~~gg~D 265 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAG--ASRIIGIDID-SKKYETAKKF--GVNEFVNPKDHDKPIQEVIVDLTDGGVD 265 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHT--CSCEEEECSC-TTHHHHHHTT--TCCEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCC-HHHHHHHHHc--CCcEEEccccCchhHHHHHHHhcCCCCC
Confidence 345789999999889999999999863 2489999999 9999988764 221111111 12333333332 34799
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+|| |+-- ....++.+.+. |++.+|.++.-....
T Consensus 266 ~vi-d~~g----~~~~~~~~~~~--l~~g~G~iv~~G~~~ 298 (378)
T 3uko_A 266 YSF-ECIG----NVSVMRAALEC--CHKGWGTSVIVGVAA 298 (378)
T ss_dssp EEE-ECSC----CHHHHHHHHHT--BCTTTCEEEECSCCC
T ss_pred EEE-ECCC----CHHHHHHHHHH--hhccCCEEEEEcccC
Confidence 987 4433 24567778887 765227777765543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0053 Score=54.10 Aligned_cols=101 Identities=12% Similarity=0.056 Sum_probs=66.5
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcE-EEEE--cchhhhhhhc-CCC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCI-EFVK--GDAQKLLMGD-YRG 112 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~V-e~v~--gda~~~L~~~-~~~ 112 (220)
..+.++||-+|+|++|..++.||+++ +. +|++++.+ +++.+.+++. |. +.+ .... .+..+.+.++ .+.
T Consensus 189 ~~~g~~VlV~GaG~vG~~aiqlak~~---Ga~~Vi~~~~~-~~~~~~a~~l--Ga-~~vi~~~~~~~~~~~~i~~~t~gg 261 (373)
T 1p0f_A 189 VTPGSTCAVFGLGGVGFSAIVGCKAA---GASRIIGVGTH-KDKFPKAIEL--GA-TECLNPKDYDKPIYEVICEKTNGG 261 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHH---TCSEEEEECSC-GGGHHHHHHT--TC-SEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEECCC-HHHHHHHHHc--CC-cEEEecccccchHHHHHHHHhCCC
Confidence 44568999999998999999999876 44 89999999 9999988753 22 111 1110 1233333332 247
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCC-EEEEEecCC
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGA-GVIVGYNAL 153 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~G-gviv~dNv~ 153 (220)
+|+|| |+-- ....++.+.+. |++ | |.++.-...
T Consensus 262 ~Dvvi-d~~g----~~~~~~~~~~~--l~~-~~G~iv~~G~~ 295 (373)
T 1p0f_A 262 VDYAV-ECAG----RIETMMNALQS--TYC-GSGVTVVLGLA 295 (373)
T ss_dssp BSEEE-ECSC----CHHHHHHHHHT--BCT-TTCEEEECCCC
T ss_pred CCEEE-ECCC----CHHHHHHHHHH--Hhc-CCCEEEEEccC
Confidence 99987 4433 23557777777 765 6 777765443
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0029 Score=55.97 Aligned_cols=101 Identities=10% Similarity=0.045 Sum_probs=69.9
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcC--CCccEEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDY--RGADFVLI 118 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~--~~~D~Vfi 118 (220)
+.+++|+.|| +|-.++.|..+.-. ...|+++|.| +.+++..+.|+. ...++++|..++.+... ..+|+|+.
T Consensus 2 ~~~v~dLFaG-~Gg~~~g~~~~G~~-~~~v~~~E~d-~~a~~~~~~N~~----~~~~~~~Di~~~~~~~~~~~~~D~l~~ 74 (343)
T 1g55_A 2 PLRVLELYSG-VGGMHHALRESCIP-AQVVAAIDVN-TVANEVYKYNFP----HTQLLAKTIEGITLEEFDRLSFDMILM 74 (343)
T ss_dssp CEEEEEETCT-TCHHHHHHHHHTCS-EEEEEEECCC-HHHHHHHHHHCT----TSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred CCeEEEeCcC-ccHHHHHHHHCCCC-ceEEEEEeCC-HHHHHHHHHhcc----ccccccCCHHHccHhHcCcCCcCEEEE
Confidence 3579999997 89999998876210 1368999999 999999999984 23477888887653211 26999999
Q ss_pred cCC---------C------CCccHHHHHHHHHhhcCCC--CCCEEEEEecCC
Q 042616 119 DCN---------I------DIDGHKNVFRAAKESVMHG--SGAGVIVGYNAL 153 (220)
Q Consensus 119 D~~---------k------~~~~y~~~l~~l~~~~~L~--~~Ggviv~dNv~ 153 (220)
+.+ + +...+.++++.+.. ++ | -+++..||-
T Consensus 75 gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~---~~~~P--~~~~~ENV~ 121 (343)
T 1g55_A 75 SPPCQPFTRIGRQGDMTDSRTNSFLHILDILPR---LQKLP--KYILLENVK 121 (343)
T ss_dssp CCC------------------CHHHHHHHHGGG---CSSCC--SEEEEEEET
T ss_pred cCCCcchhhcCCcCCccCccchHHHHHHHHHHH---hcCCC--CEEEEeCCc
Confidence 987 1 11244566776665 34 4 366667775
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.012 Score=52.05 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=65.1
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
...+.++||.+|+|++|..++.||+++ +.+|++++.+ +++.+.+++. |. + .++.-.-.+.+..+...+|+|
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~---Ga~Vi~~~~~-~~~~~~a~~l--Ga-~--~vi~~~~~~~~~~~~~g~Dvv 261 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAM---GAHVVAFTTS-EAKREAAKAL--GA-D--EVVNSRNADEMAAHLKSFDFI 261 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT---TCEEEEEESS-GGGHHHHHHH--TC-S--EEEETTCHHHHHTTTTCEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHHc--CC-c--EEeccccHHHHHHhhcCCCEE
Confidence 345678999999988999999999875 6789999999 9999988863 22 2 222222223333333679998
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|--... .. .++.+.+. |++ ||.++.-..
T Consensus 262 id~~g~--~~---~~~~~~~~--l~~-~G~iv~~G~ 289 (369)
T 1uuf_A 262 LNTVAA--PH---NLDDFTTL--LKR-DGTMTLVGA 289 (369)
T ss_dssp EECCSS--CC---CHHHHHTT--EEE-EEEEEECCC
T ss_pred EECCCC--HH---HHHHHHHH--hcc-CCEEEEecc
Confidence 744433 21 24555666 665 777776543
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.01 Score=51.89 Aligned_cols=102 Identities=8% Similarity=0.048 Sum_probs=65.7
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCc-EEEEE-cchhhhhhhc----
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANC-IEFVK-GDAQKLLMGD---- 109 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~-Ve~v~-gda~~~L~~~---- 109 (220)
+...+.++||-+|+|++|..++.+|+++ +.+|++++.+ +++.+.+++. |. +. +.... .+..+.+...
T Consensus 164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~---Ga~Vi~~~~~-~~~~~~~~~l--Ga-~~~~~~~~~~~~~~~i~~~~~~~ 236 (352)
T 1e3j_A 164 AGVQLGTTVLVIGAGPIGLVSVLAAKAY---GAFVVCTARS-PRRLEVAKNC--GA-DVTLVVDPAKEEESSIIERIRSA 236 (352)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHT---TCEEEEEESC-HHHHHHHHHT--TC-SEEEECCTTTSCHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc---CCEEEEEcCC-HHHHHHHHHh--CC-CEEEcCcccccHHHHHHHHhccc
Confidence 3455678999999988999999999875 5689999999 9998888753 22 21 11110 2222222221
Q ss_pred -CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 110 -YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 110 -~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
...+|+||--... ...++.+.+. |++ ||.++.-..
T Consensus 237 ~g~g~D~vid~~g~-----~~~~~~~~~~--l~~-~G~iv~~G~ 272 (352)
T 1e3j_A 237 IGDLPNVTIDCSGN-----EKCITIGINI--TRT-GGTLMLVGM 272 (352)
T ss_dssp SSSCCSEEEECSCC-----HHHHHHHHHH--SCT-TCEEEECSC
T ss_pred cCCCCCEEEECCCC-----HHHHHHHHHH--Hhc-CCEEEEEec
Confidence 2469998743333 3456777777 766 777776543
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0062 Score=53.72 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=65.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCc-EEEEE--cchhhhhhhc-CCCc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANC-IEFVK--GDAQKLLMGD-YRGA 113 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~-Ve~v~--gda~~~L~~~-~~~~ 113 (220)
.+.++||-+|+|++|..++.||+++ +. +|++++.+ +++.+.+++. |. +. +.... .+..+.+..+ .+.+
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~---Ga~~Vi~~~~~-~~~~~~a~~l--Ga-~~vi~~~~~~~~~~~~v~~~~~~g~ 266 (376)
T 1e3i_A 194 TPGSTCAVFGLGCVGLSAIIGCKIA---GASRIIAIDIN-GEKFPKAKAL--GA-TDCLNPRELDKPVQDVITELTAGGV 266 (376)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT---TCSEEEEECSC-GGGHHHHHHT--TC-SEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCC-HHHHHHHHHh--CC-cEEEccccccchHHHHHHHHhCCCc
Confidence 4568999999988999999999875 55 89999999 9999888753 22 11 11110 1233333222 2479
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCC-EEEEEecC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGA-GVIVGYNA 152 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~G-gviv~dNv 152 (220)
|+|| |+-- ....++.+.+. |++ | |.++.-..
T Consensus 267 Dvvi-d~~G----~~~~~~~~~~~--l~~-~~G~iv~~G~ 298 (376)
T 1e3i_A 267 DYSL-DCAG----TAQTLKAAVDC--TVL-GWGSCTVVGA 298 (376)
T ss_dssp SEEE-ESSC----CHHHHHHHHHT--BCT-TTCEEEECCC
T ss_pred cEEE-ECCC----CHHHHHHHHHH--hhc-CCCEEEEECC
Confidence 9987 4433 23567777777 775 6 77776544
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0071 Score=53.30 Aligned_cols=101 Identities=18% Similarity=0.100 Sum_probs=65.8
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcE-EEEE--cchhhhhhhc-CCC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCI-EFVK--GDAQKLLMGD-YRG 112 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~V-e~v~--gda~~~L~~~-~~~ 112 (220)
..+.++||.+|+|++|..++.+|+++ +. +|++++.+ +++.+.+++. |. +.+ .... .+..+.+..+ .+.
T Consensus 190 ~~~g~~VlV~GaG~vG~~a~qla~~~---Ga~~Vi~~~~~-~~~~~~~~~l--Ga-~~vi~~~~~~~~~~~~~~~~~~~g 262 (374)
T 1cdo_A 190 VEPGSTCAVFGLGAVGLAAVMGCHSA---GAKRIIAVDLN-PDKFEKAKVF--GA-TDFVNPNDHSEPISQVLSKMTNGG 262 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT---TCSEEEEECSC-GGGHHHHHHT--TC-CEEECGGGCSSCHHHHHHHHHTSC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCC-HHHHHHHHHh--CC-ceEEeccccchhHHHHHHHHhCCC
Confidence 34568999999988999999999875 55 89999999 9999988753 22 111 1100 1233333222 247
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCC-EEEEEecCC
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGA-GVIVGYNAL 153 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~G-gviv~dNv~ 153 (220)
+|+|| |+-- ....++.+.+. |++ | |.+|.-...
T Consensus 263 ~D~vi-d~~g----~~~~~~~~~~~--l~~-~~G~iv~~G~~ 296 (374)
T 1cdo_A 263 VDFSL-ECVG----NVGVMRNALES--CLK-GWGVSVLVGWT 296 (374)
T ss_dssp BSEEE-ECSC----CHHHHHHHHHT--BCT-TTCEEEECSCC
T ss_pred CCEEE-ECCC----CHHHHHHHHHH--hhc-CCcEEEEEcCC
Confidence 99987 4433 13457777777 776 6 777765443
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0062 Score=54.47 Aligned_cols=105 Identities=11% Similarity=0.036 Sum_probs=64.3
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
..+.++||-+|+|++|..++.||+++ +. +|++++.+ +++.+.+++.= ...-+.....|..+.+..+ ...+|
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~---Ga~~Vi~~~~~-~~~~~~~~~lG--a~~vi~~~~~~~~~~i~~~t~g~g~D 284 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHA---GASKVILSEPS-EVRRNLAKELG--ADHVIDPTKENFVEAVLDYTNGLGAK 284 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT---TCSEEEEECSC-HHHHHHHHHHT--CSEEECTTTSCHHHHHHHHTTTCCCS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCC-HHHHHHHHHcC--CCEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 34568999999998999999999875 45 99999999 99999888752 1111111112333333333 24699
Q ss_pred EEEEcCCCCCc--cHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 115 FVLIDCNIDID--GHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 115 ~VfiD~~k~~~--~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+||--... . .+...++.+... +++ ||.++.-...
T Consensus 285 ~vid~~g~--~~~~~~~~~~~l~~~--~~~-~G~iv~~G~~ 320 (404)
T 3ip1_A 285 LFLEATGV--PQLVWPQIEEVIWRA--RGI-NATVAIVARA 320 (404)
T ss_dssp EEEECSSC--HHHHHHHHHHHHHHC--SCC-CCEEEECSCC
T ss_pred EEEECCCC--cHHHHHHHHHHHHhc--cCC-CcEEEEeCCC
Confidence 88744333 2 222333333233 365 7777775444
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0079 Score=52.99 Aligned_cols=101 Identities=15% Similarity=0.054 Sum_probs=65.8
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCc-EEEEE--cchhhhhhhc-CCC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANC-IEFVK--GDAQKLLMGD-YRG 112 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~-Ve~v~--gda~~~L~~~-~~~ 112 (220)
..+.++||-+|+|++|..++.+|+++ +. +|++++.+ +++.+.+++. |. +. +.... .+..+.+..+ .+.
T Consensus 189 ~~~g~~VlV~GaG~vG~~a~qla~~~---Ga~~Vi~~~~~-~~~~~~~~~l--Ga-~~vi~~~~~~~~~~~~~~~~~~~g 261 (374)
T 2jhf_A 189 VTQGSTCAVFGLGGVGLSVIMGCKAA---GAARIIGVDIN-KDKFAKAKEV--GA-TECVNPQDYKKPIQEVLTEMSNGG 261 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT---TCSEEEEECSC-GGGHHHHHHT--TC-SEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCC-HHHHHHHHHh--CC-ceEecccccchhHHHHHHHHhCCC
Confidence 34568999999988999999999875 55 89999999 9999888753 22 11 11110 1233333332 247
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCC-EEEEEecCC
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGA-GVIVGYNAL 153 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~G-gviv~dNv~ 153 (220)
+|+|| |+-- ....++.+.+. |++ | |.++.-...
T Consensus 262 ~D~vi-d~~g----~~~~~~~~~~~--l~~-~~G~iv~~G~~ 295 (374)
T 2jhf_A 262 VDFSF-EVIG----RLDTMVTALSC--CQE-AYGVSVIVGVP 295 (374)
T ss_dssp BSEEE-ECSC----CHHHHHHHHHH--BCT-TTCEEEECSCC
T ss_pred CcEEE-ECCC----CHHHHHHHHHH--hhc-CCcEEEEeccC
Confidence 99887 4433 13456777777 765 6 777765443
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0081 Score=52.86 Aligned_cols=101 Identities=17% Similarity=0.116 Sum_probs=66.1
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcE-EEEE--cchhhhhhhc-CCC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCI-EFVK--GDAQKLLMGD-YRG 112 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~V-e~v~--gda~~~L~~~-~~~ 112 (220)
..+.++||-+|+|++|..++.+|+++ +. +|++++.+ +++.+.+++. |. +.+ .... .+..+.+.++ .+.
T Consensus 188 ~~~g~~VlV~GaG~vG~~avqla~~~---Ga~~Vi~~~~~-~~~~~~~~~l--Ga-~~vi~~~~~~~~~~~~v~~~~~~g 260 (373)
T 2fzw_A 188 LEPGSVCAVFGLGGVGLAVIMGCKVA---GASRIIGVDIN-KDKFARAKEF--GA-TECINPQDFSKPIQEVLIEMTDGG 260 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHH---TCSEEEEECSC-GGGHHHHHHH--TC-SEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCC-HHHHHHHHHc--CC-ceEeccccccccHHHHHHHHhCCC
Confidence 34568999999988999999999876 45 89999999 9999988754 22 111 1100 1233333332 247
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCC-EEEEEecCC
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGA-GVIVGYNAL 153 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~G-gviv~dNv~ 153 (220)
+|+|| |+.- ....++.+.+. |++ | |.++.-...
T Consensus 261 ~D~vi-d~~g----~~~~~~~~~~~--l~~-~~G~iv~~G~~ 294 (373)
T 2fzw_A 261 VDYSF-ECIG----NVKVMRAALEA--CHK-GWGVSVVVGVA 294 (373)
T ss_dssp BSEEE-ECSC----CHHHHHHHHHT--BCT-TTCEEEECSCC
T ss_pred CCEEE-ECCC----cHHHHHHHHHh--hcc-CCcEEEEEecC
Confidence 99987 4433 13456777777 776 6 777765443
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0043 Score=56.16 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=41.2
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGR 90 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g 90 (220)
..+...++|+|++ .|++|+.++.......++|+++|++ |..++..++|++.
T Consensus 224 l~~~~~viDvGAn-~G~~s~~~a~~~~~~~~~V~afEP~-p~~~~~L~~n~~~ 274 (409)
T 2py6_A 224 FSDSEKMVDCGAS-IGESLAGLIGVTKGKFERVWMIEPD-RINLQTLQNVLRR 274 (409)
T ss_dssp CCSSCEEEEETCT-TSHHHHHHHHHHTSCCSEEEEECCC-HHHHHHHHHHHHH
T ss_pred cCCCCEEEECCCC-cCHHHHHHHHHhcCCCCEEEEEcCC-HHHHHHHHHHHHh
Confidence 3567899999986 9999999884332225899999999 9999999988753
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.014 Score=50.74 Aligned_cols=103 Identities=11% Similarity=-0.001 Sum_probs=68.2
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
...+.++||-+|+|++|..++.||+++. +.+|++++.+ +++.+.+++. |. +.+--...+..+.+.++ ...+|
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g--~~~Vi~~~~~-~~~~~~~~~l--Ga-~~~i~~~~~~~~~v~~~t~g~g~d 241 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVS--AARVIAVDLD-DDRLALAREV--GA-DAAVKSGAGAADAIRELTGGQGAT 241 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHC--CCEEEEEESC-HHHHHHHHHT--TC-SEEEECSTTHHHHHHHHHGGGCEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCC-HHHHHHHHHc--CC-CEEEcCCCcHHHHHHHHhCCCCCe
Confidence 4456789999999889999999998863 5799999999 9999988764 22 11111112333333222 23799
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+||--... ...++.+.+. |++ ||.++.-...
T Consensus 242 ~v~d~~G~-----~~~~~~~~~~--l~~-~G~iv~~G~~ 272 (345)
T 3jv7_A 242 AVFDFVGA-----QSTIDTAQQV--VAV-DGHISVVGIH 272 (345)
T ss_dssp EEEESSCC-----HHHHHHHHHH--EEE-EEEEEECSCC
T ss_pred EEEECCCC-----HHHHHHHHHH--Hhc-CCEEEEECCC
Confidence 87743333 3466777777 765 8887776543
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0098 Score=52.44 Aligned_cols=97 Identities=9% Similarity=-0.043 Sum_probs=63.3
Q ss_pred CCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEE
Q 042616 40 NAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVL 117 (220)
Q Consensus 40 ~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~Vf 117 (220)
+.+.||-+| +|++|..++.+|+++. +.+|++++.+ +++.+.+++. |. +.+--...+..+.+..+ .+.+|+||
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~--g~~Vi~~~~~-~~~~~~~~~l--Ga-d~vi~~~~~~~~~v~~~~~~g~Dvvi 244 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRT--DLTVIATASR-PETQEWVKSL--GA-HHVIDHSKPLAAEVAALGLGAPAFVF 244 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHC--CSEEEEECSS-HHHHHHHHHT--TC-SEEECTTSCHHHHHHTTCSCCEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhc--CCEEEEEeCC-HHHHHHHHHc--CC-CEEEeCCCCHHHHHHHhcCCCceEEE
Confidence 456899998 7889999999998753 6799999999 9999888763 22 11110112333333333 25799776
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+.- ....++.+.+. |++ ||.++.-
T Consensus 245 -d~~g----~~~~~~~~~~~--l~~-~G~iv~~ 269 (363)
T 4dvj_A 245 -STTH----TDKHAAEIADL--IAP-QGRFCLI 269 (363)
T ss_dssp -ECSC----HHHHHHHHHHH--SCT-TCEEEEC
T ss_pred -ECCC----chhhHHHHHHH--hcC-CCEEEEE
Confidence 5543 33567777777 776 6666553
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.011 Score=51.92 Aligned_cols=98 Identities=17% Similarity=0.120 Sum_probs=64.4
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE---cchhhhhhhc--CCC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK---GDAQKLLMGD--YRG 112 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~---gda~~~L~~~--~~~ 112 (220)
..+.++||-+|+|++|..++.+|++. +.+|++++.+ +++.+.+++. |. +. ++. .+..+.+..+ ...
T Consensus 187 ~~~g~~VlV~G~G~vG~~a~qla~~~---Ga~Vi~~~~~-~~~~~~~~~l--Ga-~~--vi~~~~~~~~~~v~~~~~g~g 257 (363)
T 3uog_A 187 LRAGDRVVVQGTGGVALFGLQIAKAT---GAEVIVTSSS-REKLDRAFAL--GA-DH--GINRLEEDWVERVYALTGDRG 257 (363)
T ss_dssp CCTTCEEEEESSBHHHHHHHHHHHHT---TCEEEEEESC-HHHHHHHHHH--TC-SE--EEETTTSCHHHHHHHHHTTCC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCEEEEEecC-chhHHHHHHc--CC-CE--EEcCCcccHHHHHHHHhCCCC
Confidence 44578999999988999999999875 6799999999 9988888764 22 21 222 2233333222 247
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+|+||--... .. ++.+.+. |++ ||.++.-...
T Consensus 258 ~D~vid~~g~--~~----~~~~~~~--l~~-~G~iv~~G~~ 289 (363)
T 3uog_A 258 ADHILEIAGG--AG----LGQSLKA--VAP-DGRISVIGVL 289 (363)
T ss_dssp EEEEEEETTS--SC----HHHHHHH--EEE-EEEEEEECCC
T ss_pred ceEEEECCCh--HH----HHHHHHH--hhc-CCEEEEEecC
Confidence 9988744443 33 4555566 655 7777765444
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.024 Score=49.26 Aligned_cols=100 Identities=10% Similarity=-0.008 Sum_probs=65.9
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch-hhhhhhc--CCCc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA-QKLLMGD--YRGA 113 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda-~~~L~~~--~~~~ 113 (220)
.. +.++||-+|+|++|..++.+|+++.+ +.+|++++.+ +++.+.+++. |. +. ++.-+. .+.+..+ ...+
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~-Ga~Vi~~~~~-~~~~~~~~~l--Ga-~~--vi~~~~~~~~~~~~~~g~g~ 239 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMK-NITIVGISRS-KKHRDFALEL--GA-DY--VSEMKDAESLINKLTDGLGA 239 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCT-TCEEEEECSC-HHHHHHHHHH--TC-SE--EECHHHHHHHHHHHHTTCCE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcC-CCEEEEEeCC-HHHHHHHHHh--CC-CE--EeccccchHHHHHhhcCCCc
Confidence 44 77999999998899999999998632 5689999999 8988888763 22 21 222111 2222222 2379
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+||--... ...++.+.+. |++ ||.++.-..
T Consensus 240 D~vid~~g~-----~~~~~~~~~~--l~~-~G~iv~~g~ 270 (344)
T 2h6e_A 240 SIAIDLVGT-----EETTYNLGKL--LAQ-EGAIILVGM 270 (344)
T ss_dssp EEEEESSCC-----HHHHHHHHHH--EEE-EEEEEECCC
T ss_pred cEEEECCCC-----hHHHHHHHHH--hhc-CCEEEEeCC
Confidence 998744333 3356777777 765 787776544
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0062 Score=52.64 Aligned_cols=101 Identities=14% Similarity=0.161 Sum_probs=65.1
Q ss_pred hCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 38 GNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 38 ~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
..+.++||-+| +|++|..++.+|++. +.+|++++.+ +++.+.+++. |....+.....+..+.+.+. ...+|
T Consensus 138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~---Ga~Vi~~~~~-~~~~~~~~~~--Ga~~~~~~~~~~~~~~~~~~~~~~g~D 211 (325)
T 3jyn_A 138 VKPGEIILFHAAAGGVGSLACQWAKAL---GAKLIGTVSS-PEKAAHAKAL--GAWETIDYSHEDVAKRVLELTDGKKCP 211 (325)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHH---TCEEEEEESS-HHHHHHHHHH--TCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHHc--CCCEEEeCCCccHHHHHHHHhCCCCce
Confidence 34578999999 688999999888875 6799999999 9999888764 21111111112333333232 24799
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
++| |+.- . ..++.+.+. |++ ||.++.-...
T Consensus 212 vvi-d~~g--~---~~~~~~~~~--l~~-~G~iv~~g~~ 241 (325)
T 3jyn_A 212 VVY-DGVG--Q---DTWLTSLDS--VAP-RGLVVSFGNA 241 (325)
T ss_dssp EEE-ESSC--G---GGHHHHHTT--EEE-EEEEEECCCT
T ss_pred EEE-ECCC--h---HHHHHHHHH--hcC-CCEEEEEecC
Confidence 876 4443 2 346677777 765 8887776543
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.005 Score=53.39 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=64.4
Q ss_pred hCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCc-EEEEEcchhhhhhhc--CCCc
Q 042616 38 GNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANC-IEFVKGDAQKLLMGD--YRGA 113 (220)
Q Consensus 38 ~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~-Ve~v~gda~~~L~~~--~~~~ 113 (220)
..+.++||-+| +|++|..++.+|++. +.+|++++.+ +++.+.+++. |. +. +.....+..+.+... ...+
T Consensus 146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~---Ga~Vi~~~~~-~~~~~~~~~~--ga-~~~~~~~~~~~~~~~~~~~~~~g~ 218 (334)
T 3qwb_A 146 VKKGDYVLLFAAAGGVGLILNQLLKMK---GAHTIAVAST-DEKLKIAKEY--GA-EYLINASKEDILRQVLKFTNGKGV 218 (334)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT---TCEEEEEESS-HHHHHHHHHT--TC-SEEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHHc--CC-cEEEeCCCchHHHHHHHHhCCCCc
Confidence 35578999999 678999988888864 6799999999 8888888764 21 11 111112333333222 2469
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|++| |+.- . ..++.+.+. |++ ||.++.-...
T Consensus 219 D~vi-d~~g--~---~~~~~~~~~--l~~-~G~iv~~G~~ 249 (334)
T 3qwb_A 219 DASF-DSVG--K---DTFEISLAA--LKR-KGVFVSFGNA 249 (334)
T ss_dssp EEEE-ECCG--G---GGHHHHHHH--EEE-EEEEEECCCT
T ss_pred eEEE-ECCC--h---HHHHHHHHH--hcc-CCEEEEEcCC
Confidence 9886 4433 2 346666676 765 7887775443
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.011 Score=51.99 Aligned_cols=101 Identities=12% Similarity=0.089 Sum_probs=66.2
Q ss_pred HhhCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcE-EEEEcchhhhhhhc-CCC
Q 042616 36 AAGNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCI-EFVKGDAQKLLMGD-YRG 112 (220)
Q Consensus 36 a~~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~V-e~v~gda~~~L~~~-~~~ 112 (220)
+...+.++||-+| +|++|..++.+|++. +.+|++++.+ +++.+.+++. |. +.+ .....+..+.+... ...
T Consensus 159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~---Ga~Vi~~~~~-~~~~~~~~~~--Ga-~~~~~~~~~~~~~~~~~~~~~g 231 (362)
T 2c0c_A 159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKA---KCHVIGTCSS-DEKSAFLKSL--GC-DRPINYKTEPVGTVLKQEYPEG 231 (362)
T ss_dssp TCCCTTCEEEETTTTBTTHHHHHHHHHHT---TCEEEEEESS-HHHHHHHHHT--TC-SEEEETTTSCHHHHHHHHCTTC
T ss_pred cCCCCCCEEEEeCCCcHHHHHHHHHHHhC---CCEEEEEECC-HHHHHHHHHc--CC-cEEEecCChhHHHHHHHhcCCC
Confidence 3456678999999 688999999999874 6799999999 8888888763 22 111 11112333333322 246
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+|+|| |+.- . ..++.+.+. |++ ||.++.-..
T Consensus 232 ~D~vi-d~~g--~---~~~~~~~~~--l~~-~G~iv~~g~ 262 (362)
T 2c0c_A 232 VDVVY-ESVG--G---AMFDLAVDA--LAT-KGRLIVIGF 262 (362)
T ss_dssp EEEEE-ECSC--T---HHHHHHHHH--EEE-EEEEEECCC
T ss_pred CCEEE-ECCC--H---HHHHHHHHH--Hhc-CCEEEEEeC
Confidence 99987 4443 2 466777777 765 777776543
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.012 Score=52.27 Aligned_cols=105 Identities=10% Similarity=0.005 Sum_probs=67.6
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc-hhhhhhhc--CCC
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGD-AQKLLMGD--YRG 112 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd-a~~~L~~~--~~~ 112 (220)
...+.++||.+|+|++|..++.||+++ +. +|++++.+ +++++.+++. |. +.|.....+ ..+.+..+ ...
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~---Ga~~Vi~~~~~-~~~~~~a~~l--Ga-~~i~~~~~~~~~~~v~~~t~g~g 254 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLL---GAAVVIVGDLN-PARLAHAKAQ--GF-EIADLSLDTPLHEQIAALLGEPE 254 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT---TCSEEEEEESC-HHHHHHHHHT--TC-EEEETTSSSCHHHHHHHHHSSSC
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC---CCCeEEEEcCC-HHHHHHHHHc--CC-cEEccCCcchHHHHHHHHhCCCC
Confidence 445678999999988999999999975 44 89999999 9999988764 32 211111112 23333232 247
Q ss_pred ccEEEEcCCCCCcc------------HHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 113 ADFVLIDCNIDIDG------------HKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 113 ~D~VfiD~~k~~~~------------y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+|+||--... .. ....++.+.+. |++ ||.++.-...
T Consensus 255 ~Dvvid~~G~--~~~~~~~~~~~~~~~~~~~~~~~~~--l~~-~G~iv~~G~~ 302 (398)
T 1kol_A 255 VDCAVDAVGF--EARGHGHEGAKHEAPATVLNSLMQV--TRV-AGKIGIPGLY 302 (398)
T ss_dssp EEEEEECCCT--TCBCSSTTGGGSBCTTHHHHHHHHH--EEE-EEEEEECSCC
T ss_pred CCEEEECCCC--cccccccccccccchHHHHHHHHHH--Hhc-CCEEEEeccc
Confidence 9998744333 21 12467777777 765 8887765443
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.012 Score=51.12 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=65.8
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCc-EEEEEcchhhhhhhcCCCccE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANC-IEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~-Ve~v~gda~~~L~~~~~~~D~ 115 (220)
...+.++||-+|+|++|..++.+|++. +.+|++++.+ ++..+.+++. |. +. +.....+..+.+....+.+|+
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~---Ga~Vi~~~~~-~~~~~~~~~l--Ga-~~~~d~~~~~~~~~~~~~~~~~d~ 233 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAM---GLNVVAVDIG-DEKLELAKEL--GA-DLVVNPLKEDAAKFMKEKVGGVHA 233 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHT---TCEEEEECSC-HHHHHHHHHT--TC-SEEECTTTSCHHHHHHHHHSSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHC--CC-CEEecCCCccHHHHHHHHhCCCCE
Confidence 345678999999988999999999874 6799999999 9988888752 22 11 111112322222221257998
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
||--... ...++.+.+. |++ ||.++.-...
T Consensus 234 vid~~g~-----~~~~~~~~~~--l~~-~G~~v~~g~~ 263 (339)
T 1rjw_A 234 AVVTAVS-----KPAFQSAYNS--IRR-GGACVLVGLP 263 (339)
T ss_dssp EEESSCC-----HHHHHHHHHH--EEE-EEEEEECCCC
T ss_pred EEECCCC-----HHHHHHHHHH--hhc-CCEEEEeccc
Confidence 8744332 3456777777 765 7877765443
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.22 E-value=0.031 Score=49.06 Aligned_cols=97 Identities=12% Similarity=0.000 Sum_probs=71.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcC
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDC 120 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~ 120 (220)
..+++|+.|| +|-.++.+..+- ...|.++|.| +..++..+.|+... . ++|..++.+.....+|+|+.+.
T Consensus 11 ~~~~~dLFaG-~Gg~~~g~~~aG---~~~v~~~e~d-~~a~~t~~~N~~~~---~---~~Di~~~~~~~~~~~D~l~~gp 79 (327)
T 2c7p_A 11 GLRFIDLFAG-LGGFRLALESCG---AECVYSNEWD-KYAQEVYEMNFGEK---P---EGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TCEEEEETCT-TTHHHHHHHHTT---CEEEEEECCC-HHHHHHHHHHHSCC---C---BSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCcEEEECCC-cCHHHHHHHHCC---CeEEEEEeCC-HHHHHHHHHHcCCC---C---cCCHHHcCHhhCCCCCEEEECC
Confidence 4689999986 898888887752 2357889999 99999999888532 1 6888887655455799999874
Q ss_pred CC---------------CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 121 NI---------------DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 121 ~k---------------~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+- +...+.++++.+... +| -+++..||-
T Consensus 80 PCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~---~P--~~~~~ENV~ 122 (327)
T 2c7p_A 80 PCQAFSISGKQKGFEDSRGTLFFDIARIVREK---KP--KVVFMENVK 122 (327)
T ss_dssp CCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHH---CC--SEEEEEEEG
T ss_pred CCCCcchhcccCCCcchhhHHHHHHHHHHHhc---cC--cEEEEeCcH
Confidence 32 113467788888775 45 488888986
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0089 Score=52.97 Aligned_cols=99 Identities=14% Similarity=0.142 Sum_probs=64.7
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCC-cEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc------chhhhhhhcC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTG-GRVVCILSGVIGDIDASKKSLGRYANCIEFVKG------DAQKLLMGDY 110 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~-grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g------da~~~L~~~~ 110 (220)
..+.++||-+|+|++|..++.||+++ + .+|++++.+ +++.+.+++. |. + .++.- +..+.+.++.
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~---Ga~~Vi~~~~~-~~~~~~~~~l--Ga-~--~vi~~~~~~~~~~~~~v~~~~ 263 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSL---GAENVIVIAGS-PNRLKLAEEI--GA-D--LTLNRRETSVEERRKAIMDIT 263 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHT---TBSEEEEEESC-HHHHHHHHHT--TC-S--EEEETTTSCHHHHHHHHHHHT
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHc---CCceEEEEcCC-HHHHHHHHHc--CC-c--EEEeccccCcchHHHHHHHHh
Confidence 34568999999988999999999875 5 599999999 8988888753 22 2 22222 2222232322
Q ss_pred --CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 111 --RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 111 --~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
..+|+||--... . ..++.+.+. |++ ||.++.-...
T Consensus 264 ~g~g~Dvvid~~g~--~---~~~~~~~~~--l~~-~G~iv~~G~~ 300 (380)
T 1vj0_A 264 HGRGADFILEATGD--S---RALLEGSEL--LRR-GGFYSVAGVA 300 (380)
T ss_dssp TTSCEEEEEECSSC--T---THHHHHHHH--EEE-EEEEEECCCC
T ss_pred CCCCCcEEEECCCC--H---HHHHHHHHH--Hhc-CCEEEEEecC
Confidence 369998744332 2 345666666 665 7887765443
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0096 Score=51.53 Aligned_cols=103 Identities=19% Similarity=0.209 Sum_probs=65.8
Q ss_pred HhhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCc
Q 042616 36 AAGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGA 113 (220)
Q Consensus 36 a~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~ 113 (220)
+...+.++||-+|+ |++|..++.++.+. +.+|++++.+ ++..+.+.+.+. ....+.....+..+.+... .+.+
T Consensus 145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~---Ga~Vi~~~~~-~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 219 (336)
T 4b7c_A 145 GQPKNGETVVISGAAGAVGSVAGQIARLK---GCRVVGIAGG-AEKCRFLVEELG-FDGAIDYKNEDLAAGLKRECPKGI 219 (336)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHHHHT---TCEEEEEESS-HHHHHHHHHTTC-CSEEEETTTSCHHHHHHHHCTTCE
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHHHcC-CCEEEECCCHHHHHHHHHhcCCCc
Confidence 44566799999997 77888888888764 6799999999 888888744332 2111111112333333222 3579
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|++| |+.- . ..++.+.+. |++ ||.++.-..
T Consensus 220 d~vi-~~~g--~---~~~~~~~~~--l~~-~G~iv~~G~ 249 (336)
T 4b7c_A 220 DVFF-DNVG--G---EILDTVLTR--IAF-KARIVLCGA 249 (336)
T ss_dssp EEEE-ESSC--H---HHHHHHHTT--EEE-EEEEEECCC
T ss_pred eEEE-ECCC--c---chHHHHHHH--Hhh-CCEEEEEee
Confidence 9876 4433 2 467778887 765 888776543
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.011 Score=51.90 Aligned_cols=101 Identities=11% Similarity=0.054 Sum_probs=64.5
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh-hhhhhcCCCccE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ-KLLMGDYRGADF 115 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~-~~L~~~~~~~D~ 115 (220)
...+.++||.+|+|++|..++.+|++. +.+|++++.+ +++.+.+++. |. + .++.-+.. +....+.+.+|+
T Consensus 176 ~~~~g~~VlV~GaG~vG~~~~qlak~~---Ga~Vi~~~~~-~~~~~~~~~l--Ga-~--~v~~~~~~~~~~~~~~~~~D~ 246 (360)
T 1piw_A 176 GCGPGKKVGIVGLGGIGSMGTLISKAM---GAETYVISRS-SRKREDAMKM--GA-D--HYIATLEEGDWGEKYFDTFDL 246 (360)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHH---TCEEEEEESS-STTHHHHHHH--TC-S--EEEEGGGTSCHHHHSCSCEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEcCC-HHHHHHHHHc--CC-C--EEEcCcCchHHHHHhhcCCCE
Confidence 345678999999988999999999875 5689999999 8888888763 22 2 12222112 222222357999
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|| |+.- ......++.+.+. |++ ||.++.-..
T Consensus 247 vi-d~~g--~~~~~~~~~~~~~--l~~-~G~iv~~g~ 277 (360)
T 1piw_A 247 IV-VCAS--SLTDIDFNIMPKA--MKV-GGRIVSISI 277 (360)
T ss_dssp EE-ECCS--CSTTCCTTTGGGG--EEE-EEEEEECCC
T ss_pred EE-ECCC--CCcHHHHHHHHHH--hcC-CCEEEEecC
Confidence 87 4433 1001234555666 665 788776543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.012 Score=51.33 Aligned_cols=97 Identities=11% Similarity=0.135 Sum_probs=63.1
Q ss_pred hCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCc-EEEEEcchhhhhhhcC--CCc
Q 042616 38 GNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANC-IEFVKGDAQKLLMGDY--RGA 113 (220)
Q Consensus 38 ~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~-Ve~v~gda~~~L~~~~--~~~ 113 (220)
..+.++||-+|+ |++|..++.+|++. +.+|++++.+ ++..+.+++. |. +. +... .+..+.+.... ..+
T Consensus 157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~---Ga~Vi~~~~~-~~~~~~~~~~--ga-~~v~~~~-~~~~~~v~~~~~~~g~ 228 (342)
T 4eye_A 157 LRAGETVLVLGAAGGIGTAAIQIAKGM---GAKVIAVVNR-TAATEFVKSV--GA-DIVLPLE-EGWAKAVREATGGAGV 228 (342)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT---TCEEEEEESS-GGGHHHHHHH--TC-SEEEESS-TTHHHHHHHHTTTSCE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHhc--CC-cEEecCc-hhHHHHHHHHhCCCCc
Confidence 345789999997 78899998888875 6799999999 8888888874 22 22 1111 33333333322 369
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
|++|--... . .++.+.+. |++ ||.++.-.
T Consensus 229 Dvvid~~g~--~----~~~~~~~~--l~~-~G~iv~~G 257 (342)
T 4eye_A 229 DMVVDPIGG--P----AFDDAVRT--LAS-EGRLLVVG 257 (342)
T ss_dssp EEEEESCC--------CHHHHHHT--EEE-EEEEEEC-
T ss_pred eEEEECCch--h----HHHHHHHh--hcC-CCEEEEEE
Confidence 988754443 2 45666666 665 78777654
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=96.13 E-value=0.023 Score=48.45 Aligned_cols=94 Identities=12% Similarity=0.029 Sum_probs=62.5
Q ss_pred hCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch-hhhhhhcCCCccE
Q 042616 38 GNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA-QKLLMGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda-~~~L~~~~~~~D~ 115 (220)
..+.++||-+|+ |++|..++.+|++. +.+|++++.+ +++.+.+++. |. +. ++.-+- .+....+ ..+|+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~---Ga~Vi~~~~~-~~~~~~~~~~--ga-~~--~~~~~~~~~~~~~~-~~~d~ 192 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM---GLRVLAAASR-PEKLALPLAL--GA-EE--AATYAEVPERAKAW-GGLDL 192 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT---TCEEEEEESS-GGGSHHHHHT--TC-SE--EEEGGGHHHHHHHT-TSEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHhc--CC-CE--EEECCcchhHHHHh-cCceE
Confidence 446789999997 77899988888874 6799999999 8888887653 22 21 222222 3333332 67999
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+|- ... ..++.+.+. +++ ||.++.-.
T Consensus 193 vid-~g~------~~~~~~~~~--l~~-~G~~v~~g 218 (302)
T 1iz0_A 193 VLE-VRG------KEVEESLGL--LAH-GGRLVYIG 218 (302)
T ss_dssp EEE-CSC------TTHHHHHTT--EEE-EEEEEEC-
T ss_pred EEE-CCH------HHHHHHHHh--hcc-CCEEEEEe
Confidence 886 543 245666776 665 77777643
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.026 Score=49.09 Aligned_cols=94 Identities=10% Similarity=-0.012 Sum_probs=64.4
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
...+.++||-+|+|++|..++.+|++. +.+|++++.+ +++.+.+++. |. +.+ + .+..+ + ...+|+|
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~---Ga~Vi~~~~~-~~~~~~~~~l--Ga-~~v--~-~~~~~-~---~~~~D~v 238 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAM---GAEVSVFARN-EHKKQDALSM--GV-KHF--Y-TDPKQ-C---KEELDFI 238 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHT---TCEEEEECSS-STTHHHHHHT--TC-SEE--E-SSGGG-C---CSCEEEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC---CCeEEEEeCC-HHHHHHHHhc--CC-Cee--c-CCHHH-H---hcCCCEE
Confidence 445678999999988999999999875 6799999999 8999888763 22 222 2 34322 2 2389998
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|--... . ..++.+.+. |++ ||.++.-..
T Consensus 239 id~~g~--~---~~~~~~~~~--l~~-~G~iv~~G~ 266 (348)
T 3two_A 239 ISTIPT--H---YDLKDYLKL--LTY-NGDLALVGL 266 (348)
T ss_dssp EECCCS--C---CCHHHHHTT--EEE-EEEEEECCC
T ss_pred EECCCc--H---HHHHHHHHH--Hhc-CCEEEEECC
Confidence 743333 2 135566666 665 787776544
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.027 Score=49.10 Aligned_cols=96 Identities=15% Similarity=0.053 Sum_probs=63.2
Q ss_pred CCCEEEEE-cCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEE
Q 042616 40 NAQLIVMA-CSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVL 117 (220)
Q Consensus 40 ~a~~ILEI-Gtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~Vf 117 (220)
+.++||-+ |+|++|..++.+|++. +.+|++++.+ +++.+.+++.-. +.+--...+..+.+... ...+|+||
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~---Ga~Vi~~~~~-~~~~~~~~~lGa---~~vi~~~~~~~~~~~~~~~~g~Dvv~ 222 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY---GLRVITTASR-NETIEWTKKMGA---DIVLNHKESLLNQFKTQGIELVDYVF 222 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT---TCEEEEECCS-HHHHHHHHHHTC---SEEECTTSCHHHHHHHHTCCCEEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHhcCC---cEEEECCccHHHHHHHhCCCCccEEE
Confidence 67899999 5788999999998864 6799999999 999998887421 11100012333333232 35799776
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+.- ....++.+.+. |++ ||.+|.-
T Consensus 223 -d~~g----~~~~~~~~~~~--l~~-~G~iv~~ 247 (346)
T 3fbg_A 223 -CTFN----TDMYYDDMIQL--VKP-RGHIATI 247 (346)
T ss_dssp -ESSC----HHHHHHHHHHH--EEE-EEEEEES
T ss_pred -ECCC----chHHHHHHHHH--hcc-CCEEEEE
Confidence 4433 34556777777 765 7877653
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.014 Score=50.37 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=63.1
Q ss_pred hhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE-cchhhhhhhc-CCCc
Q 042616 37 AGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK-GDAQKLLMGD-YRGA 113 (220)
Q Consensus 37 ~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~-gda~~~L~~~-~~~~ 113 (220)
...+.++||.+|+ |++|..++.++.+. +.+|++++.+ ++..+.+++. +....+.... .+..+.+... .+.+
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~---G~~V~~~~~~-~~~~~~~~~~--g~~~~~d~~~~~~~~~~~~~~~~~~~ 215 (333)
T 1v3u_A 142 GVKGGETVLVSAAAGAVGSVVGQIAKLK---GCKVVGAAGS-DEKIAYLKQI--GFDAAFNYKTVNSLEEALKKASPDGY 215 (333)
T ss_dssp CCCSSCEEEEESTTBHHHHHHHHHHHHT---TCEEEEEESS-HHHHHHHHHT--TCSEEEETTSCSCHHHHHHHHCTTCE
T ss_pred CCCCCCEEEEecCCCcHHHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHhc--CCcEEEecCCHHHHHHHHHHHhCCCC
Confidence 3455789999996 67888888777653 6799999999 8888877443 2211111111 2333333322 2479
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|++|--+.. ..++.+.+. |++ ||.++.-..
T Consensus 216 d~vi~~~g~------~~~~~~~~~--l~~-~G~~v~~g~ 245 (333)
T 1v3u_A 216 DCYFDNVGG------EFLNTVLSQ--MKD-FGKIAICGA 245 (333)
T ss_dssp EEEEESSCH------HHHHHHHTT--EEE-EEEEEECCC
T ss_pred eEEEECCCh------HHHHHHHHH--Hhc-CCEEEEEec
Confidence 988744432 346777777 765 887776543
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.024 Score=49.57 Aligned_cols=96 Identities=11% Similarity=0.034 Sum_probs=61.9
Q ss_pred CEEEEEcCCchHHHH-HHHH-HHcCCCCcE-EEEEeCCchh---HHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 42 QLIVMACSSIAVSRT-LALV-AAARQTGGR-VVCILSGVIG---DIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 42 ~~ILEIGtg~~G~sT-l~LA-~A~~~~~gr-V~tIE~d~~~---~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
++||-+|+|++|..+ +.+| +++ +.+ |++++.+ ++ +.+.+++. |. +.+.....|..+ +..+.+.+|+
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~---Ga~~Vi~~~~~-~~~~~~~~~~~~l--Ga-~~v~~~~~~~~~-i~~~~gg~Dv 245 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDK---GYENLYCLGRR-DRPDPTIDIIEEL--DA-TYVDSRQTPVED-VPDVYEQMDF 245 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTT---CCCEEEEEECC-CSSCHHHHHHHHT--TC-EEEETTTSCGGG-HHHHSCCEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHc---CCcEEEEEeCC-cccHHHHHHHHHc--CC-cccCCCccCHHH-HHHhCCCCCE
Confidence 899999998899998 8888 764 555 9999999 88 88888753 22 222111123333 3232237999
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|| |+.- . ...++.+.+. |++ ||.++.-...
T Consensus 246 vi-d~~g--~--~~~~~~~~~~--l~~-~G~iv~~g~~ 275 (357)
T 2b5w_A 246 IY-EATG--F--PKHAIQSVQA--LAP-NGVGALLGVP 275 (357)
T ss_dssp EE-ECSC--C--HHHHHHHHHH--EEE-EEEEEECCCC
T ss_pred EE-ECCC--C--hHHHHHHHHH--Hhc-CCEEEEEeCC
Confidence 87 4433 1 2456777777 765 8887775443
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.019 Score=50.02 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcE-EEEEcchhhhhhhc--CCCccE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCI-EFVKGDAQKLLMGD--YRGADF 115 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~V-e~v~gda~~~L~~~--~~~~D~ 115 (220)
+.++||-+|+|++|..++.+|++. +. +|++++.+ +++.+.+++. |. +.+ .....+..+.+.++ ...+|+
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~---Ga~~Vi~~~~~-~~~~~~~~~~--Ga-~~~~~~~~~~~~~~v~~~~~g~g~D~ 239 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKAS---GAYPVIVSEPS-DFRRELAKKV--GA-DYVINPFEEDVVKEVMDITDGNGVDV 239 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHT---TCCSEEEECSC-HHHHHHHHHH--TC-SEEECTTTSCHHHHHHHHTTTSCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCC-HHHHHHHHHh--CC-CEEECCCCcCHHHHHHHHcCCCCCCE
Confidence 568899999988999999999875 55 89999999 8988888753 22 111 11112333333332 236999
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
||--... ...++.+.+. |++ ||.++.-..
T Consensus 240 vid~~g~-----~~~~~~~~~~--l~~-~G~iv~~g~ 268 (348)
T 2d8a_A 240 FLEFSGA-----PKALEQGLQA--VTP-AGRVSLLGL 268 (348)
T ss_dssp EEECSCC-----HHHHHHHHHH--EEE-EEEEEECCC
T ss_pred EEECCCC-----HHHHHHHHHH--Hhc-CCEEEEEcc
Confidence 8743332 3456777777 765 787776543
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.013 Score=51.32 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=63.3
Q ss_pred hCCCCEEEEE-cCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccE
Q 042616 38 GNNAQLIVMA-CSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEI-Gtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~ 115 (220)
..+.++||-+ |+|++|..++.+|++. +.+|++++.+ +++.+.+++. |....+.....+..+.+... ...+|+
T Consensus 165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~---Ga~Vi~~~~~-~~~~~~~~~l--Ga~~~~~~~~~~~~~~~~~~~~~g~Dv 238 (353)
T 4dup_A 165 LTEGESVLIHGGTSGIGTTAIQLARAF---GAEVYATAGS-TGKCEACERL--GAKRGINYRSEDFAAVIKAETGQGVDI 238 (353)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT---TCEEEEEESS-HHHHHHHHHH--TCSEEEETTTSCHHHHHHHHHSSCEEE
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHhc--CCCEEEeCCchHHHHHHHHHhCCCceE
Confidence 3457899999 5677898888888764 6799999999 9988888764 22111111112333333222 357998
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+|--... . .++.+.+. |++ ||.++.-...
T Consensus 239 vid~~g~--~----~~~~~~~~--l~~-~G~iv~~g~~ 267 (353)
T 4dup_A 239 ILDMIGA--A----YFERNIAS--LAK-DGCLSIIAFL 267 (353)
T ss_dssp EEESCCG--G----GHHHHHHT--EEE-EEEEEECCCT
T ss_pred EEECCCH--H----HHHHHHHH--hcc-CCEEEEEEec
Confidence 7744333 2 45666666 665 7877765443
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.022 Score=49.88 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+.++||-+|+|++|..++.+|+++ +.+|++++.+ +++.+.+++.+. . +.+ +..+-.+.+....+.+|+||--
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~---Ga~Vi~~~~~-~~~~~~~~~~lG-a-~~v--i~~~~~~~~~~~~~g~D~vid~ 251 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAM---GHHVTVISSS-NKKREEALQDLG-A-DDY--VIGSDQAKMSELADSLDYVIDT 251 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHH---TCEEEEEESS-TTHHHHHHTTSC-C-SCE--EETTCHHHHHHSTTTEEEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCeEEEEeCC-hHHHHHHHHHcC-C-cee--eccccHHHHHHhcCCCCEEEEC
Confidence 678999999998999999999875 5799999999 888888774443 2 221 2211123333334579998743
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
... .. .++.+.+. |++ ||.++.-..
T Consensus 252 ~g~--~~---~~~~~~~~--l~~-~G~iv~~G~ 276 (357)
T 2cf5_A 252 VPV--HH---ALEPYLSL--LKL-DGKLILMGV 276 (357)
T ss_dssp CCS--CC---CSHHHHTT--EEE-EEEEEECSC
T ss_pred CCC--hH---HHHHHHHH--hcc-CCEEEEeCC
Confidence 332 21 23445555 655 787776543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.013 Score=50.99 Aligned_cols=102 Identities=13% Similarity=0.012 Sum_probs=62.7
Q ss_pred hhCCCCEEEEEcCC-chHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCc
Q 042616 37 AGNNAQLIVMACSS-IAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGA 113 (220)
Q Consensus 37 ~~~~a~~ILEIGtg-~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~ 113 (220)
...+.++||-+|+| ++|..++.+|++. +.+|++++.+ ++..+.+++. |....+.....+..+.+... ...+
T Consensus 141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~---Ga~Vi~~~~~-~~~~~~~~~l--ga~~~~~~~~~~~~~~~~~~~~~~g~ 214 (340)
T 3gms_A 141 NLQRNDVLLVNACGSAIGHLFAQLSQIL---NFRLIAVTRN-NKHTEELLRL--GAAYVIDTSTAPLYETVMELTNGIGA 214 (340)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHH---TCEEEEEESS-STTHHHHHHH--TCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred ccCCCCEEEEeCCccHHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHhC--CCcEEEeCCcccHHHHHHHHhCCCCC
Confidence 34567899999875 6898888888875 6799999999 8888888874 22111111112333333222 2479
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|++| |+.- .. ...+.+ +. |++ ||.++.-...
T Consensus 215 Dvvi-d~~g--~~--~~~~~~-~~--l~~-~G~iv~~G~~ 245 (340)
T 3gms_A 215 DAAI-DSIG--GP--DGNELA-FS--LRP-NGHFLTIGLL 245 (340)
T ss_dssp EEEE-ESSC--HH--HHHHHH-HT--EEE-EEEEEECCCT
T ss_pred cEEE-ECCC--Ch--hHHHHH-HH--hcC-CCEEEEEeec
Confidence 9886 4433 22 223333 55 665 8888876544
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.027 Score=49.04 Aligned_cols=96 Identities=16% Similarity=0.153 Sum_probs=62.2
Q ss_pred hCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 38 GNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 38 ~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
..+.++||-+| +|++|..++.+|++. +.+|+++ .+ ++..+.+++. |. +.|. ...+..+.+... ...+|
T Consensus 148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~---Ga~Vi~~-~~-~~~~~~~~~l--Ga-~~i~-~~~~~~~~~~~~~~~~g~D 218 (343)
T 3gaz_A 148 VQDGQTVLIQGGGGGVGHVAIQIALAR---GARVFAT-AR-GSDLEYVRDL--GA-TPID-ASREPEDYAAEHTAGQGFD 218 (343)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEE-EC-HHHHHHHHHH--TS-EEEE-TTSCHHHHHHHHHTTSCEE
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHC---CCEEEEE-eC-HHHHHHHHHc--CC-CEec-cCCCHHHHHHHHhcCCCce
Confidence 34578999999 688999999999874 6799999 78 8888887663 22 1133 222333333222 24799
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+|| |+.- . ..++.+.+. |++ ||.+|.-.
T Consensus 219 ~vi-d~~g--~---~~~~~~~~~--l~~-~G~iv~~g 246 (343)
T 3gaz_A 219 LVY-DTLG--G---PVLDASFSA--VKR-FGHVVSCL 246 (343)
T ss_dssp EEE-ESSC--T---HHHHHHHHH--EEE-EEEEEESC
T ss_pred EEE-ECCC--c---HHHHHHHHH--Hhc-CCeEEEEc
Confidence 776 5543 2 456677777 765 77776643
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.11 Score=45.56 Aligned_cols=101 Identities=11% Similarity=0.174 Sum_probs=64.0
Q ss_pred CCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEE
Q 042616 39 NNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~V 116 (220)
.+.++||-+|+ |++|..++.||++. +.+|+++- + +++.+.+++. |...-+.....|..+.+..+ .+.+|++
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~---Ga~Vi~~~-~-~~~~~~~~~l--Ga~~vi~~~~~~~~~~v~~~t~g~~d~v 235 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLS---GYIPIATC-S-PHNFDLAKSR--GAEEVFDYRAPNLAQTIRTYTKNNLRYA 235 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHT---TCEEEEEE-C-GGGHHHHHHT--TCSEEEETTSTTHHHHHHHHTTTCCCEE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHC---CCEEEEEe-C-HHHHHHHHHc--CCcEEEECCCchHHHHHHHHccCCccEE
Confidence 56789999997 67999999999875 67898885 7 7888888764 22111222223433333333 3459998
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
| |+-- ....++.+.+. |.++||.++.-..+
T Consensus 236 ~-d~~g----~~~~~~~~~~~--l~~~~G~iv~~g~~ 265 (371)
T 3gqv_A 236 L-DCIT----NVESTTFCFAA--IGRAGGHYVSLNPF 265 (371)
T ss_dssp E-ESSC----SHHHHHHHHHH--SCTTCEEEEESSCC
T ss_pred E-ECCC----chHHHHHHHHH--hhcCCCEEEEEecC
Confidence 7 4433 23456777776 63248888876543
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.016 Score=50.15 Aligned_cols=102 Identities=14% Similarity=0.127 Sum_probs=64.3
Q ss_pred hhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE-cchhhhhhhc-CCCc
Q 042616 37 AGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK-GDAQKLLMGD-YRGA 113 (220)
Q Consensus 37 ~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~-gda~~~L~~~-~~~~ 113 (220)
...+.++||.+|+ |++|..++.++.+. +.+|++++.+ ++..+.+++.+. ....+.... .+..+.+... ...+
T Consensus 152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~---G~~V~~~~~~-~~~~~~~~~~~g-~~~~~d~~~~~~~~~~~~~~~~~~~ 226 (345)
T 2j3h_A 152 SPKEGETVYVSAASGAVGQLVGQLAKMM---GCYVVGSAGS-KEKVDLLKTKFG-FDDAFNYKEESDLTAALKRCFPNGI 226 (345)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHT---TCEEEEEESS-HHHHHHHHHTSC-CSEEEETTSCSCSHHHHHHHCTTCE
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHHHcC-CceEEecCCHHHHHHHHHHHhCCCC
Confidence 3456789999996 77888888888764 6799999999 888888875442 211111111 1233333222 2469
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|++|- +.- . ..++.+.+. |++ ||.++.-..
T Consensus 227 d~vi~-~~g--~---~~~~~~~~~--l~~-~G~~v~~G~ 256 (345)
T 2j3h_A 227 DIYFE-NVG--G---KMLDAVLVN--MNM-HGRIAVCGM 256 (345)
T ss_dssp EEEEE-SSC--H---HHHHHHHTT--EEE-EEEEEECCC
T ss_pred cEEEE-CCC--H---HHHHHHHHH--Hhc-CCEEEEEcc
Confidence 98874 433 2 367777777 765 787776543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.062 Score=47.20 Aligned_cols=97 Identities=13% Similarity=0.070 Sum_probs=62.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+.++||-+|+|++|..++.+|++. +.+|+.++.+ ++..+.+++.+. . + .++.-+-.+.+..+.+.+|+||--
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~---Ga~Vi~~~~~-~~~~~~~~~~lG-a-~--~v~~~~~~~~~~~~~~~~D~vid~ 258 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAF---GSKVTVISTS-PSKKEEALKNFG-A-D--SFLVSRDQEQMQAAAGTLDGIIDT 258 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT---TCEEEEEESC-GGGHHHHHHTSC-C-S--EEEETTCHHHHHHTTTCEEEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHHhcC-C-c--eEEeccCHHHHHHhhCCCCEEEEC
Confidence 668999999988999999999875 6799999999 888887775443 2 1 122221123333434579998754
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
... .. .++.+.+. +++ ||.++.-..
T Consensus 259 ~g~--~~---~~~~~~~~--l~~-~G~iv~~g~ 283 (366)
T 1yqd_A 259 VSA--VH---PLLPLFGL--LKS-HGKLILVGA 283 (366)
T ss_dssp CSS--CC---CSHHHHHH--EEE-EEEEEECCC
T ss_pred CCc--HH---HHHHHHHH--Hhc-CCEEEEEcc
Confidence 443 21 12344455 554 777776543
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.018 Score=49.79 Aligned_cols=100 Identities=12% Similarity=0.168 Sum_probs=62.4
Q ss_pred hCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 38 GNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 38 ~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
..+.++||.+|+ |++|..++.++.+. +.+|++++.+ ++..+.+++. +....+.....+..+.+... ...+|
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~---G~~Vi~~~~~-~~~~~~~~~~--g~~~~~d~~~~~~~~~i~~~~~~~~~d 216 (333)
T 1wly_A 143 VKPGDYVLIHAAAGGMGHIMVPWARHL---GATVIGTVST-EEKAETARKL--GCHHTINYSTQDFAEVVREITGGKGVD 216 (333)
T ss_dssp CCTTCEEEETTTTSTTHHHHHHHHHHT---TCEEEEEESS-HHHHHHHHHH--TCSEEEETTTSCHHHHHHHHHTTCCEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHHc--CCCEEEECCCHHHHHHHHHHhCCCCCe
Confidence 345689999994 77999888888764 6799999999 8888888763 22111111112222222222 24699
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
++| |+.- . ..++.+.+. |++ ||.++.-..
T Consensus 217 ~vi-~~~g--~---~~~~~~~~~--l~~-~G~iv~~g~ 245 (333)
T 1wly_A 217 VVY-DSIG--K---DTLQKSLDC--LRP-RGMCAAYGH 245 (333)
T ss_dssp EEE-ECSC--T---TTHHHHHHT--EEE-EEEEEECCC
T ss_pred EEE-ECCc--H---HHHHHHHHh--hcc-CCEEEEEec
Confidence 887 4433 2 345667776 665 787776543
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.097 Score=46.02 Aligned_cols=90 Identities=12% Similarity=-0.049 Sum_probs=60.8
Q ss_pred CCEEEEEcC-----CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 41 AQLIVMACS-----SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 41 a~~ILEIGt-----g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
..+||++|+ .+.|.. .|.+-.+. ++.|+++|.. +-. ...+ .+++||..+... ..+||+
T Consensus 110 gmrVLDLGA~s~kg~APGS~--VLr~~~p~-g~~VVavDL~-~~~---------sda~--~~IqGD~~~~~~--~~k~DL 172 (344)
T 3r24_A 110 NMRVIHFGAGSDKGVAPGTA--VLRQWLPT-GTLLVDSDLN-DFV---------SDAD--STLIGDCATVHT--ANKWDL 172 (344)
T ss_dssp TCEEEEESCCCTTSBCHHHH--HHHHHSCT-TCEEEEEESS-CCB---------CSSS--EEEESCGGGEEE--SSCEEE
T ss_pred CCEEEeCCCCCCCCCCCcHH--HHHHhCCC-CcEEEEeeCc-ccc---------cCCC--eEEEcccccccc--CCCCCE
Confidence 489999995 146763 34444443 6799999999 321 1112 459999876442 478999
Q ss_pred EEEcCCCC------Cc------cHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 116 VLIDCNID------ID------GHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 116 VfiD~~k~------~~------~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+-|-... .. .....++.+... |+| ||-+++.
T Consensus 173 VISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~--Lkp-GGsFvVK 216 (344)
T 3r24_A 173 IISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQK--LAL-GGSIAVK 216 (344)
T ss_dssp EEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred EEecCCCCcCCccccchhHHHHHHHHHHHHHHHh--CcC-CCEEEEE
Confidence 99996541 11 235567888888 876 8888888
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.048 Score=47.38 Aligned_cols=102 Identities=17% Similarity=0.079 Sum_probs=64.2
Q ss_pred hCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEE-Ecchhhhhhhc-CCCcc
Q 042616 38 GNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFV-KGDAQKLLMGD-YRGAD 114 (220)
Q Consensus 38 ~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v-~gda~~~L~~~-~~~~D 114 (220)
..+.++||.+|+ |++|..++.++.+. +.+|+.++.+ ++..+.+++. +....+.+. ..+..+.+... .+.+|
T Consensus 167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~---Ga~V~~~~~~-~~~~~~~~~~--g~~~~~d~~~~~~~~~~~~~~~~~~~D 240 (347)
T 2hcy_A 167 LMAGHWVAISGAAGGLGSLAVQYAKAM---GYRVLGIDGG-EGKEELFRSI--GGEVFIDFTKEKDIVGAVLKATDGGAH 240 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEECS-TTHHHHHHHT--TCCEEEETTTCSCHHHHHHHHHTSCEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHC---CCcEEEEcCC-HHHHHHHHHc--CCceEEecCccHhHHHHHHHHhCCCCC
Confidence 345689999997 67888888887764 6799999999 8888877653 221111111 12333333222 23799
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
++|--... ...++.+.+. |++ ||.++.-...
T Consensus 241 ~vi~~~g~-----~~~~~~~~~~--l~~-~G~iv~~g~~ 271 (347)
T 2hcy_A 241 GVINVSVS-----EAAIEASTRY--VRA-NGTTVLVGMP 271 (347)
T ss_dssp EEEECSSC-----HHHHHHHTTS--EEE-EEEEEECCCC
T ss_pred EEEECCCc-----HHHHHHHHHH--Hhc-CCEEEEEeCC
Confidence 98754443 3567777777 765 7887765443
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.044 Score=49.37 Aligned_cols=101 Identities=15% Similarity=0.124 Sum_probs=63.6
Q ss_pred hhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc--------------
Q 042616 37 AGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD-------------- 101 (220)
Q Consensus 37 ~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd-------------- 101 (220)
...+.++||-+|+ |++|..++.+|++. +.+|+.++.+ +++.+.+++. |....+.....+
T Consensus 217 ~~~~g~~VlV~GasG~iG~~a~qla~~~---Ga~vi~~~~~-~~~~~~~~~l--Ga~~~i~~~~~~~~~~~~~~~~~~~~ 290 (447)
T 4a0s_A 217 QMKQGDIVLIWGASGGLGSYAIQFVKNG---GGIPVAVVSS-AQKEAAVRAL--GCDLVINRAELGITDDIADDPRRVVE 290 (447)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHT---TCEEEEEESS-HHHHHHHHHT--TCCCEEEHHHHTCCTTGGGCHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHhc--CCCEEEecccccccccccccccccch
Confidence 3456789999996 88999988888874 6799999999 8888888653 221112111111
Q ss_pred -----hhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 102 -----AQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 102 -----a~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
...+.......+|+|| |+.- . ..++.+.+. +++ ||.+|.-..
T Consensus 291 ~~~~~~~~v~~~~g~g~Dvvi-d~~G--~---~~~~~~~~~--l~~-~G~iv~~G~ 337 (447)
T 4a0s_A 291 TGRKLAKLVVEKAGREPDIVF-EHTG--R---VTFGLSVIV--ARR-GGTVVTCGS 337 (447)
T ss_dssp HHHHHHHHHHHHHSSCCSEEE-ECSC--H---HHHHHHHHH--SCT-TCEEEESCC
T ss_pred hhhHHHHHHHHHhCCCceEEE-ECCC--c---hHHHHHHHH--Hhc-CCEEEEEec
Confidence 1111111135799886 4443 2 356777777 765 777776543
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.013 Score=50.59 Aligned_cols=123 Identities=8% Similarity=-0.081 Sum_probs=69.4
Q ss_pred CCChhHHHHHHHHHh--hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAA--GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~--~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
...+..-.|+...-+ ..+..+|||+||+ .|-++-.++.-. ..+.+++++.. .......+.. .....++..+.+
T Consensus 55 YrSRaA~KL~ei~ek~~l~~~~~VLDLGaA-PGGWSQvAa~~~--~~~~v~g~dVG-vDl~~~pi~~-~~~g~~ii~~~~ 129 (277)
T 3evf_A 55 AVSRGTAKLRWFHERGYVKLEGRVIDLGCG-RGGWCYYAAAQK--EVSGVKGFTLG-RDGHEKPMNV-QSLGWNIITFKD 129 (277)
T ss_dssp CSSTHHHHHHHHHHTTSSCCCEEEEEETCT-TCHHHHHHHTST--TEEEEEEECCC-CTTCCCCCCC-CBTTGGGEEEEC
T ss_pred ccccHHHHHHHHHHhCCCCCCCEEEEecCC-CCHHHHHHHHhc--CCCcceeEEEe-ccCccccccc-CcCCCCeEEEec
Confidence 566666666655544 3446789999995 898888766431 13577777776 3321000000 111114444555
Q ss_pred chhhhhhhcCCCccEEEEcCCCCCcc-H------HHHHHHHHhhcCCCCCC-EEEEEecCCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDIDG-H------KNVFRAAKESVMHGSGA-GVIVGYNALPK 155 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~~~-y------~~~l~~l~~~~~L~~~G-gviv~dNv~~~ 155 (220)
++. ...-..++||+|+.|...+.+. + ..+++.+.+. |+| | |.+|++ ++.+
T Consensus 130 ~~d-v~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~--Lkp-G~G~FV~K-Vf~p 187 (277)
T 3evf_A 130 KTD-IHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKW--LAC-GVDNFCVK-VLAP 187 (277)
T ss_dssp SCC-TTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHH--HTT-CCSEEEEE-ESCT
T ss_pred cce-ehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHH--hCC-CCCeEEEE-ecCC
Confidence 542 2211146899999998652111 1 1235666777 776 7 888884 7764
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.035 Score=48.44 Aligned_cols=102 Identities=16% Similarity=0.091 Sum_probs=63.8
Q ss_pred hhCCC--CEEEEEcC-CchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CC
Q 042616 37 AGNNA--QLIVMACS-SIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YR 111 (220)
Q Consensus 37 ~~~~a--~~ILEIGt-g~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~ 111 (220)
...+. ++||-+|+ |++|..++.++.+. +. +|++++.+ ++..+.+++.+. ....+.....+..+.+... .+
T Consensus 155 ~~~~g~~~~vlI~GasggiG~~~~~~a~~~---Ga~~Vi~~~~~-~~~~~~~~~~~g-~~~~~d~~~~~~~~~~~~~~~~ 229 (357)
T 2zb4_A 155 HITAGSNKTMVVSGAAGACGSVAGQIGHFL---GCSRVVGICGT-HEKCILLTSELG-FDAAINYKKDNVAEQLRESCPA 229 (357)
T ss_dssp CCCTTSCCEEEESSTTBHHHHHHHHHHHHT---TCSEEEEEESC-HHHHHHHHHTSC-CSEEEETTTSCHHHHHHHHCTT
T ss_pred CCCCCCccEEEEECCCcHHHHHHHHHHHHC---CCCeEEEEeCC-HHHHHHHHHHcC-CceEEecCchHHHHHHHHhcCC
Confidence 34556 89999997 77888888887763 66 99999999 888888776442 1111111112333333222 23
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.+|++|- +.- . ..++.+.+. |++ ||.++.-..
T Consensus 230 ~~d~vi~-~~G--~---~~~~~~~~~--l~~-~G~iv~~G~ 261 (357)
T 2zb4_A 230 GVDVYFD-NVG--G---NISDTVISQ--MNE-NSHIILCGQ 261 (357)
T ss_dssp CEEEEEE-SCC--H---HHHHHHHHT--EEE-EEEEEECCC
T ss_pred CCCEEEE-CCC--H---HHHHHHHHH--hcc-CcEEEEECC
Confidence 6998874 433 2 567777777 765 787776543
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.02 Score=49.29 Aligned_cols=100 Identities=9% Similarity=0.084 Sum_probs=62.2
Q ss_pred hCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 38 GNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 38 ~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
..+.++||.+| +|++|..++.++.+. +.+|++++.+ ++..+.+++. +....+.....+..+.+... ...+|
T Consensus 138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~---G~~V~~~~~~-~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~D 211 (327)
T 1qor_A 138 IKPDEQFLFHAAAGGVGLIACQWAKAL---GAKLIGTVGT-AQKAQSALKA--GAWQVINYREEDLVERLKEITGGKKVR 211 (327)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHH---TCEEEEEESS-HHHHHHHHHH--TCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHc--CCCEEEECCCccHHHHHHHHhCCCCce
Confidence 34568999999 577888888888764 6799999999 8888888763 21101111112222222222 24699
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
++|--... ..++.+.+. |++ ||.++.-..
T Consensus 212 ~vi~~~g~------~~~~~~~~~--l~~-~G~iv~~g~ 240 (327)
T 1qor_A 212 VVYDSVGR------DTWERSLDC--LQR-RGLMVSFGN 240 (327)
T ss_dssp EEEECSCG------GGHHHHHHT--EEE-EEEEEECCC
T ss_pred EEEECCch------HHHHHHHHH--hcC-CCEEEEEec
Confidence 98754432 345666666 665 787776543
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.069 Score=40.31 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=57.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh--hhhhc-CCCccEEEE
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK--LLMGD-YRGADFVLI 118 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~--~L~~~-~~~~D~Vfi 118 (220)
++|+-+|+|..|. .++..+...+-.|+.||.| ++.++.+++ ..+.++.||+.+ .|... ...+|++++
T Consensus 8 ~~viIiG~G~~G~---~la~~L~~~g~~v~vid~~-~~~~~~~~~------~g~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (140)
T 3fwz_A 8 NHALLVGYGRVGS---LLGEKLLASDIPLVVIETS-RTRVDELRE------RGVRAVLGNAANEEIMQLAHLECAKWLIL 77 (140)
T ss_dssp SCEEEECCSHHHH---HHHHHHHHTTCCEEEEESC-HHHHHHHHH------TTCEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred CCEEEECcCHHHH---HHHHHHHHCCCCEEEEECC-HHHHHHHHH------cCCCEEECCCCCHHHHHhcCcccCCEEEE
Confidence 5688888655554 4444444446789999999 888877665 236788898753 45433 257899998
Q ss_pred cCCCCCccH-HHHHHHHHhhcCCCCCCEEEEE
Q 042616 119 DCNIDIDGH-KNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 119 D~~k~~~~y-~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
-.+. ... ......++.. .| +..+++
T Consensus 78 ~~~~--~~~n~~~~~~a~~~---~~-~~~iia 103 (140)
T 3fwz_A 78 TIPN--GYEAGEIVASARAK---NP-DIEIIA 103 (140)
T ss_dssp CCSC--HHHHHHHHHHHHHH---CS-SSEEEE
T ss_pred ECCC--hHHHHHHHHHHHHH---CC-CCeEEE
Confidence 7765 322 2234444443 34 445554
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.015 Score=50.57 Aligned_cols=97 Identities=7% Similarity=0.040 Sum_probs=63.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcE-EEEEcchhhhhhhc-CCCccEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCI-EFVKGDAQKLLMGD-YRGADFV 116 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~V-e~v~gda~~~L~~~-~~~~D~V 116 (220)
+.++||-+|+|++|..++.+|++. +. +|++++.+ +++.+.+++. . +.+ .....+..+.+..+ ...+|+|
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~---Ga~~Vi~~~~~-~~~~~~~~~l-a---~~v~~~~~~~~~~~~~~~~~~g~D~v 235 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRAS---GAGPILVSDPN-PYRLAFARPY-A---DRLVNPLEEDLLEVVRRVTGSGVEVL 235 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHT---TCCSEEEECSC-HHHHGGGTTT-C---SEEECTTTSCHHHHHHHHHSSCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCC-HHHHHHHHHh-H---HhccCcCccCHHHHHHHhcCCCCCEE
Confidence 668899999988999999999875 55 89999999 8888777664 3 111 11112333333221 3579998
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
| |+.- ....++.+.+. |++ ||.++.-..
T Consensus 236 i-d~~g----~~~~~~~~~~~--l~~-~G~iv~~g~ 263 (343)
T 2dq4_A 236 L-EFSG----NEAAIHQGLMA--LIP-GGEARILGI 263 (343)
T ss_dssp E-ECSC----CHHHHHHHHHH--EEE-EEEEEECCC
T ss_pred E-ECCC----CHHHHHHHHHH--Hhc-CCEEEEEec
Confidence 7 4433 23456777777 765 787776544
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.021 Score=49.93 Aligned_cols=100 Identities=12% Similarity=0.099 Sum_probs=62.1
Q ss_pred hCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCc-EEEEEcchhhhhhhc--CCCc
Q 042616 38 GNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANC-IEFVKGDAQKLLMGD--YRGA 113 (220)
Q Consensus 38 ~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~-Ve~v~gda~~~L~~~--~~~~ 113 (220)
..+.++||.+| +|++|..++.++.+. +.+|++++.+ ++..+.+++. +. +. +.....+..+.+... ...+
T Consensus 160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~---Ga~Vi~~~~~-~~~~~~~~~~--g~-~~~~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T 2j8z_A 160 VQAGDYVLIHAGLSGVGTAAIQLTRMA---GAIPLVTAGS-QKKLQMAEKL--GA-AAGFNYKKEDFSEATLKFTKGAGV 232 (354)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT---TCEEEEEESC-HHHHHHHHHH--TC-SEEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHc--CC-cEEEecCChHHHHHHHHHhcCCCc
Confidence 34568999998 577888888888763 6799999999 8888888543 22 11 111112222222222 2469
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|++|--... . .++.+.+. |++ ||.++.-...
T Consensus 233 d~vi~~~G~--~----~~~~~~~~--l~~-~G~iv~~G~~ 263 (354)
T 2j8z_A 233 NLILDCIGG--S----YWEKNVNC--LAL-DGRWVLYGLM 263 (354)
T ss_dssp EEEEESSCG--G----GHHHHHHH--EEE-EEEEEECCCT
T ss_pred eEEEECCCc--h----HHHHHHHh--ccC-CCEEEEEecc
Confidence 998755443 2 35556666 665 7887775443
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.022 Score=49.52 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=62.1
Q ss_pred CCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcE-EEEEcchhhhhhhc--CCCcc
Q 042616 39 NNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCI-EFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 39 ~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~V-e~v~gda~~~L~~~--~~~~D 114 (220)
.+.++||.+|+ |++|..++.++.+. +.+|++++.+ ++..+.+++. |. +.+ .....+..+.+... ...+|
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~~---G~~Vi~~~~~-~~~~~~~~~~--ga-~~~~d~~~~~~~~~~~~~~~~~~~d 237 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKLF---GARVIATAGS-EDKLRRAKAL--GA-DETVNYTHPDWPKEVRRLTGGKGAD 237 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHHT---TCEEEEEESS-HHHHHHHHHH--TC-SEEEETTSTTHHHHHHHHTTTTCEE
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHhc--CC-CEEEcCCcccHHHHHHHHhCCCCce
Confidence 45689999997 77999999888864 6799999999 8888888753 22 211 11112222333222 24799
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
++|--... .. ++.+.+. |++ ||.++.-..
T Consensus 238 ~vi~~~g~--~~----~~~~~~~--l~~-~G~~v~~g~ 266 (343)
T 2eih_A 238 KVVDHTGA--LY----FEGVIKA--TAN-GGRIAIAGA 266 (343)
T ss_dssp EEEESSCS--SS----HHHHHHH--EEE-EEEEEESSC
T ss_pred EEEECCCH--HH----HHHHHHh--hcc-CCEEEEEec
Confidence 98755543 33 4555565 655 777776543
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.03 Score=47.99 Aligned_cols=89 Identities=10% Similarity=-0.042 Sum_probs=58.2
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
..+.++||-+|+|++|..++.||++. +.+|++++ + +++.+.+++. |. + .++ .| .+ .+...+|+||
T Consensus 140 ~~~g~~VlV~GaG~vG~~a~qlak~~---Ga~Vi~~~-~-~~~~~~~~~l--Ga-~--~v~-~d-~~---~v~~g~Dvv~ 204 (315)
T 3goh_A 140 LTKQREVLIVGFGAVNNLLTQMLNNA---GYVVDLVS-A-SLSQALAAKR--GV-R--HLY-RE-PS---QVTQKYFAIF 204 (315)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHH---TCEEEEEC-S-SCCHHHHHHH--TE-E--EEE-SS-GG---GCCSCEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCEEEEEE-C-hhhHHHHHHc--CC-C--EEE-cC-HH---HhCCCccEEE
Confidence 34578999999988999999999986 56999999 8 8888888774 21 1 122 24 22 2256899876
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+-- .. .+..+.+. |++ ||.++.-
T Consensus 205 -d~~g--~~---~~~~~~~~--l~~-~G~~v~~ 228 (315)
T 3goh_A 205 -DAVN--SQ---NAAALVPS--LKA-NGHIICI 228 (315)
T ss_dssp -CC------------TTGGG--EEE-EEEEEEE
T ss_pred -ECCC--ch---hHHHHHHH--hcC-CCEEEEE
Confidence 5543 22 22456666 765 7776664
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.026 Score=49.46 Aligned_cols=99 Identities=5% Similarity=-0.043 Sum_probs=61.0
Q ss_pred hCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 38 GNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 38 ~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
..+.++||.+|+ |++|..++.++.+. +.+|++++.+ ++..+.+++. +....+.....+..+.+... ...+|
T Consensus 168 ~~~g~~vlV~GasggiG~~~~~~a~~~---Ga~Vi~~~~~-~~~~~~~~~~--ga~~~~d~~~~~~~~~~~~~~~~~~~D 241 (351)
T 1yb5_A 168 VKAGESVLVHGASGGVGLAACQIARAY---GLKILGTAGT-EEGQKIVLQN--GAHEVFNHREVNYIDKIKKYVGEKGID 241 (351)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT---TCEEEEEESS-HHHHHHHHHT--TCSEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred CCCcCEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCC-hhHHHHHHHc--CCCEEEeCCCchHHHHHHHHcCCCCcE
Confidence 345789999996 77888888888764 6799999999 8888877653 22111111112222222222 23799
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
++|--... ..++.+.+. |++ ||.++.-.
T Consensus 242 ~vi~~~G~------~~~~~~~~~--l~~-~G~iv~~g 269 (351)
T 1yb5_A 242 IIIEMLAN------VNLSKDLSL--LSH-GGRVIVVG 269 (351)
T ss_dssp EEEESCHH------HHHHHHHHH--EEE-EEEEEECC
T ss_pred EEEECCCh------HHHHHHHHh--ccC-CCEEEEEe
Confidence 88643322 245666776 765 78777654
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.14 Score=43.98 Aligned_cols=96 Identities=16% Similarity=0.111 Sum_probs=61.0
Q ss_pred HhhCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh-hhhhcCCCc
Q 042616 36 AAGNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK-LLMGDYRGA 113 (220)
Q Consensus 36 a~~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~-~L~~~~~~~ 113 (220)
+...+.++||-+| +|++|..++.+|++. +.+|+++..+ +..+.+++. |. + .++.-+..+ +. .....+
T Consensus 148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~---Ga~vi~~~~~--~~~~~~~~l--Ga-~--~~i~~~~~~~~~-~~~~g~ 216 (321)
T 3tqh_A 148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQK---GTTVITTASK--RNHAFLKAL--GA-E--QCINYHEEDFLL-AISTPV 216 (321)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHT---TCEEEEEECH--HHHHHHHHH--TC-S--EEEETTTSCHHH-HCCSCE
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHc---CCEEEEEecc--chHHHHHHc--CC-C--EEEeCCCcchhh-hhccCC
Confidence 3456779999997 788999999999875 6799998754 556666653 32 1 123322222 22 223579
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
|+|| |+-- . ..++.+.+. |++ ||.++.-.
T Consensus 217 D~v~-d~~g--~---~~~~~~~~~--l~~-~G~iv~~g 245 (321)
T 3tqh_A 217 DAVI-DLVG--G---DVGIQSIDC--LKE-TGCIVSVP 245 (321)
T ss_dssp EEEE-ESSC--H---HHHHHHGGG--EEE-EEEEEECC
T ss_pred CEEE-ECCC--c---HHHHHHHHh--ccC-CCEEEEeC
Confidence 9876 4443 2 223777777 765 88877653
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.048 Score=47.38 Aligned_cols=102 Identities=12% Similarity=0.100 Sum_probs=64.5
Q ss_pred hhCCCCEEEEEcCC-chHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCc-EEEEEcchhhhhhhcC--CC
Q 042616 37 AGNNAQLIVMACSS-IAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANC-IEFVKGDAQKLLMGDY--RG 112 (220)
Q Consensus 37 ~~~~a~~ILEIGtg-~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~-Ve~v~gda~~~L~~~~--~~ 112 (220)
...+.+.||.+|+| ++|..++.++.+.. +.+|+.++.+ ++..+.+++. +. +. +.....+..+.+..+. +.
T Consensus 167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~--Ga~Vi~~~~~-~~~~~~~~~~--g~-~~~~~~~~~~~~~~~~~~~~~~~ 240 (347)
T 1jvb_A 167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVS--GATIIGVDVR-EEAVEAAKRA--GA-DYVINASMQDPLAEIRRITESKG 240 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHT--CCEEEEEESS-HHHHHHHHHH--TC-SEEEETTTSCHHHHHHHHTTTSC
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHcC--CCeEEEEcCC-HHHHHHHHHh--CC-CEEecCCCccHHHHHHHHhcCCC
Confidence 34567899999986 78888888887651 5699999999 8888888653 22 11 1111122222222222 47
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+|++|--... ...++.+.+. |++ ||.++.-..
T Consensus 241 ~d~vi~~~g~-----~~~~~~~~~~--l~~-~G~iv~~g~ 272 (347)
T 1jvb_A 241 VDAVIDLNNS-----EKTLSVYPKA--LAK-QGKYVMVGL 272 (347)
T ss_dssp EEEEEESCCC-----HHHHTTGGGG--EEE-EEEEEECCS
T ss_pred ceEEEECCCC-----HHHHHHHHHH--Hhc-CCEEEEECC
Confidence 9998754443 3456777777 765 787776544
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.047 Score=43.11 Aligned_cols=82 Identities=11% Similarity=0.003 Sum_probs=50.3
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh---hhhhhcCCCccEEEEcCCCCC
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ---KLLMGDYRGADFVLIDCNIDI 124 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~---~~L~~~~~~~D~VfiD~~k~~ 124 (220)
|++|-+|+. ||.++...|.+|.-||.| ++.-.. ..+......+.++..+.. +.+..+...||+|++|++.
T Consensus 11 gG~GKTt~a~~la~~la~~g~~vlliD~D-~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD~~~-- 85 (206)
T 4dzz_A 11 GGSGKTTAVINIATALSRSGYNIAVVDTD-PQMSLT--NWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVDGAG-- 85 (206)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEECC-TTCHHH--HHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEEECCS--
T ss_pred CCccHHHHHHHHHHHHHHCCCeEEEEECC-CCCCHH--HHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEEECCC--
Confidence 568888775 666666657799999999 765422 222222234666665432 3344445679999999997
Q ss_pred ccHHHHHHHHHhh
Q 042616 125 DGHKNVFRAAKES 137 (220)
Q Consensus 125 ~~y~~~l~~l~~~ 137 (220)
.... ....+...
T Consensus 86 ~~~~-~~~~~l~~ 97 (206)
T 4dzz_A 86 SLSV-ITSAAVMV 97 (206)
T ss_dssp SSSH-HHHHHHHH
T ss_pred CCCH-HHHHHHHH
Confidence 5533 33444443
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.13 Score=46.52 Aligned_cols=102 Identities=14% Similarity=0.096 Sum_probs=64.8
Q ss_pred hhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc-----------ch--
Q 042616 37 AGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG-----------DA-- 102 (220)
Q Consensus 37 ~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g-----------da-- 102 (220)
...+.++||-+|+ |++|..++.+|++. +.+|++++.+ +++++.+++.- ....+..... +.
T Consensus 225 ~~~~g~~VlV~GasG~vG~~avqlak~~---Ga~vi~~~~~-~~~~~~~~~lG--a~~vi~~~~~d~~~~~~~~~~~~~~ 298 (456)
T 3krt_A 225 GMKQGDNVLIWGASGGLGSYATQFALAG---GANPICVVSS-PQKAEICRAMG--AEAIIDRNAEGYRFWKDENTQDPKE 298 (456)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHT---TCEEEEEESS-HHHHHHHHHHT--CCEEEETTTTTCCSEEETTEECHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHc---CCeEEEEECC-HHHHHHHHhhC--CcEEEecCcCcccccccccccchHH
Confidence 3456789999997 88999999999875 6799999999 99999887642 1000110000 11
Q ss_pred ----hhhhhhc--CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 103 ----QKLLMGD--YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 103 ----~~~L~~~--~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+.+..+ ...+|+|| |+.- . ..++.+.+. |++ ||.++.-...
T Consensus 299 ~~~~~~~i~~~t~g~g~Dvvi-d~~G--~---~~~~~~~~~--l~~-~G~iv~~G~~ 346 (456)
T 3krt_A 299 WKRFGKRIRELTGGEDIDIVF-EHPG--R---ETFGASVFV--TRK-GGTITTCAST 346 (456)
T ss_dssp HHHHHHHHHHHHTSCCEEEEE-ECSC--H---HHHHHHHHH--EEE-EEEEEESCCT
T ss_pred HHHHHHHHHHHhCCCCCcEEE-EcCC--c---hhHHHHHHH--hhC-CcEEEEEecC
Confidence 0222222 25799775 5544 2 467777777 765 8888775443
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.061 Score=47.30 Aligned_cols=98 Identities=13% Similarity=0.129 Sum_probs=60.2
Q ss_pred hCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCc-EEEEEcchhhhhhhcCCCccE
Q 042616 38 GNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANC-IEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~-Ve~v~gda~~~L~~~~~~~D~ 115 (220)
..+.++||-+| +|++|..++.+|++. +.+|++++ + +++.+.+++. |. +. +.....+..+.+.. ...+|+
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~---Ga~Vi~~~-~-~~~~~~~~~l--Ga-~~v~~~~~~~~~~~~~~-~~g~D~ 251 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAW---DAHVTAVC-S-QDASELVRKL--GA-DDVIDYKSGSVEEQLKS-LKPFDF 251 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEE-C-GGGHHHHHHT--TC-SEEEETTSSCHHHHHHT-SCCBSE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhC---CCEEEEEe-C-hHHHHHHHHc--CC-CEEEECCchHHHHHHhh-cCCCCE
Confidence 34568999999 688999999998874 67999998 6 6777777543 22 11 11111233333333 257998
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
|| |+.- ..+ ..++.+.+. +++ ||.++.-.
T Consensus 252 vi-d~~g--~~~-~~~~~~~~~--l~~-~G~iv~~g 280 (375)
T 2vn8_A 252 IL-DNVG--GST-ETWAPDFLK--KWS-GATYVTLV 280 (375)
T ss_dssp EE-ESSC--TTH-HHHGGGGBC--SSS-CCEEEESC
T ss_pred EE-ECCC--Chh-hhhHHHHHh--hcC-CcEEEEeC
Confidence 86 4433 222 234566666 765 77777643
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.07 Score=44.32 Aligned_cols=40 Identities=18% Similarity=0.127 Sum_probs=28.3
Q ss_pred CCCCEEEEEcC-CchHHHHHH--HHHHcCCCCcEEEEEeCCchhH
Q 042616 39 NNAQLIVMACS-SIAVSRTLA--LVAAARQTGGRVVCILSGVIGD 80 (220)
Q Consensus 39 ~~a~~ILEIGt-g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~ 80 (220)
.+++.|.-.++ ||+|-+|+. ||.++. .+.+|.-||.| +..
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D-~~~ 67 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMD-TQA 67 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEEC-TTC
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECC-CCC
Confidence 34555554443 668888875 777777 58899999999 775
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.026 Score=47.49 Aligned_cols=54 Identities=7% Similarity=0.039 Sum_probs=39.0
Q ss_pred cEEEEEcchhhhhhhcC-CCccEEEEcCCCCCc---------------cHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 94 CIEFVKGDAQKLLMGDY-RGADFVLIDCNIDID---------------GHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 94 ~Ve~v~gda~~~L~~~~-~~~D~VfiD~~k~~~---------------~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..++++||+.+.|..+. ++||+||+|++-... ...++++.+.+. |++ ||+|++.
T Consensus 4 ~~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~--Lk~-~g~i~v~ 73 (260)
T 1g60_A 4 INKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDK--LDK-DGSLYIF 73 (260)
T ss_dssp SSSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred cCeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHH--hcC-CeEEEEE
Confidence 45789999999987764 689999999985222 124567777787 876 6666554
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.12 Score=44.29 Aligned_cols=93 Identities=14% Similarity=-0.002 Sum_probs=61.8
Q ss_pred EEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcC
Q 042616 43 LIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDC 120 (220)
Q Consensus 43 ~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~ 120 (220)
.||-+|+ |++|..++.+|++. +.+|++++.+ +++.+.+++. |. +. ++..+-.+.+..+ .+.+|++| |+
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~---Ga~Vi~~~~~-~~~~~~~~~l--Ga-~~--vi~~~~~~~~~~~~~~~~d~v~-d~ 218 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL---GYQVAAVSGR-ESTHGYLKSL--GA-NR--ILSRDEFAESRPLEKQLWAGAI-DT 218 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT---TCCEEEEESC-GGGHHHHHHH--TC-SE--EEEGGGSSCCCSSCCCCEEEEE-ES
T ss_pred eEEEECCCcHHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHhc--CC-CE--EEecCCHHHHHhhcCCCccEEE-EC
Confidence 4998996 88999999999875 6799999999 9999988874 22 11 1221111112222 35799764 66
Q ss_pred CCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 121 NIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 121 ~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
-- . +.++.+.+. |++ ||.++.-...
T Consensus 219 ~g--~---~~~~~~~~~--l~~-~G~iv~~G~~ 243 (324)
T 3nx4_A 219 VG--D---KVLAKVLAQ--MNY-GGCVAACGLA 243 (324)
T ss_dssp SC--H---HHHHHHHHT--EEE-EEEEEECCCT
T ss_pred CC--c---HHHHHHHHH--Hhc-CCEEEEEecC
Confidence 54 2 267888887 765 8887776444
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.048 Score=47.55 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=40.2
Q ss_pred CcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCc---------------cHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 93 NCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDID---------------GHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 93 ~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~---------------~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
++.++++||+.+.|+.+ .++||+||+|.+-... ...++++.+.+. |+| ||.+++
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rv--Lk~-~G~i~i 82 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKK--LKP-DGSFVV 82 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHH--EEE-EEEEEE
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHH--CcC-CcEEEE
Confidence 56899999999988765 3689999999986222 245667777887 876 666554
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.12 Score=44.92 Aligned_cols=97 Identities=16% Similarity=0.080 Sum_probs=59.9
Q ss_pred CEEEEE-cCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCccEEEE
Q 042616 42 QLIVMA-CSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGADFVLI 118 (220)
Q Consensus 42 ~~ILEI-Gtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D~Vfi 118 (220)
+.||-. |+|++|..++.+|++. +.+|++++.+ +++.+.+++. |...-+.....+..+.+..+ ...+|+||
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~---Ga~Vi~~~~~-~~~~~~~~~~--Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vi- 238 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEE---GFRPIVTVRR-DEQIALLKDI--GAAHVLNEKAPDFEATLREVMKAEQPRIFL- 238 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHH---TCEEEEEESC-GGGHHHHHHH--TCSEEEETTSTTHHHHHHHHHHHHCCCEEE-
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHHc--CCCEEEECCcHHHHHHHHHHhcCCCCcEEE-
Confidence 566654 7788999999899875 6799999999 8888888763 22111111112333333222 14799876
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|+.- . ..++.+.+. |++ ||.++.-...
T Consensus 239 d~~g--~---~~~~~~~~~--l~~-~G~iv~~G~~ 265 (349)
T 3pi7_A 239 DAVT--G---PLASAIFNA--MPK-RARWIIYGRL 265 (349)
T ss_dssp ESSC--H---HHHHHHHHH--SCT-TCEEEECCCS
T ss_pred ECCC--C---hhHHHHHhh--hcC-CCEEEEEecc
Confidence 5543 2 234667777 765 7777765443
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=94.80 E-value=0.1 Score=46.02 Aligned_cols=100 Identities=12% Similarity=0.123 Sum_probs=60.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.++++|+-+|+|++|..++.++.++ |.+|+.+|.+ +++++.+++.... .+..+..+..++. .....+|+|+-
T Consensus 165 l~~~~VlViGaGgvG~~aa~~a~~~---Ga~V~v~dr~-~~r~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~DvVI~ 236 (361)
T 1pjc_A 165 VKPGKVVILGGGVVGTEAAKMAVGL---GAQVQIFDIN-VERLSYLETLFGS---RVELLYSNSAEIE-TAVAEADLLIG 236 (361)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHT---TCEEEEEESC-HHHHHHHHHHHGG---GSEEEECCHHHHH-HHHHTCSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEeCC-HHHHHHHHHhhCc---eeEeeeCCHHHHH-HHHcCCCEEEE
Confidence 4568999999998898888877764 5699999999 9988888776542 2333333333322 11236899964
Q ss_pred cCCCCCccHHH-HHHHHHhhcCCCCCCEEEEE
Q 042616 119 DCNIDIDGHKN-VFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 119 D~~k~~~~y~~-~l~~l~~~~~L~~~Ggviv~ 149 (220)
-........+. +.+...+. +++ |++|+-
T Consensus 237 ~~~~~~~~~~~li~~~~~~~--~~~-g~~ivd 265 (361)
T 1pjc_A 237 AVLVPGRRAPILVPASLVEQ--MRT-GSVIVD 265 (361)
T ss_dssp CCCCTTSSCCCCBCHHHHTT--SCT-TCEEEE
T ss_pred CCCcCCCCCCeecCHHHHhh--CCC-CCEEEE
Confidence 43321010111 12344455 654 776654
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.078 Score=44.55 Aligned_cols=45 Identities=9% Similarity=0.075 Sum_probs=37.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG 89 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~ 89 (220)
.+...|||..|| +|.+++.... .+.+++++|.+ +..++.|+++++
T Consensus 211 ~~~~~vlD~f~G-sGtt~~~a~~----~gr~~ig~e~~-~~~~~~~~~r~~ 255 (260)
T 1g60_A 211 NPNDLVLDCFMG-SGTTAIVAKK----LGRNFIGCDMN-AEYVNQANFVLN 255 (260)
T ss_dssp CTTCEEEESSCT-TCHHHHHHHH----TTCEEEEEESC-HHHHHHHHHHHH
T ss_pred CCCCEEEECCCC-CCHHHHHHHH----cCCeEEEEeCC-HHHHHHHHHHHH
Confidence 567899999986 8887665443 27899999999 999999999986
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.4 Score=37.39 Aligned_cols=94 Identities=12% Similarity=0.095 Sum_probs=56.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCC-CcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh--hhhhhc--CCCccE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQT-GGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ--KLLMGD--YRGADF 115 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~-~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~--~~L~~~--~~~~D~ 115 (220)
.++|+-+|+|..|.. ++..+... +-+|+.+|.+ ++.++.+++. .++++.||+. +.+... ...+|+
T Consensus 39 ~~~v~IiG~G~~G~~---~a~~L~~~~g~~V~vid~~-~~~~~~~~~~------g~~~~~gd~~~~~~l~~~~~~~~ad~ 108 (183)
T 3c85_A 39 HAQVLILGMGRIGTG---AYDELRARYGKISLGIEIR-EEAAQQHRSE------GRNVISGDATDPDFWERILDTGHVKL 108 (183)
T ss_dssp TCSEEEECCSHHHHH---HHHHHHHHHCSCEEEEESC-HHHHHHHHHT------TCCEEECCTTCHHHHHTBCSCCCCCE
T ss_pred CCcEEEECCCHHHHH---HHHHHHhccCCeEEEEECC-HHHHHHHHHC------CCCEEEcCCCCHHHHHhccCCCCCCE
Confidence 357888887655554 44444433 4589999999 8887766542 2556777764 345443 457999
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|++-.+. .......+..+... .| ...|++
T Consensus 109 vi~~~~~-~~~~~~~~~~~~~~---~~-~~~ii~ 137 (183)
T 3c85_A 109 VLLAMPH-HQGNQTALEQLQRR---NY-KGQIAA 137 (183)
T ss_dssp EEECCSS-HHHHHHHHHHHHHT---TC-CSEEEE
T ss_pred EEEeCCC-hHHHHHHHHHHHHH---CC-CCEEEE
Confidence 9986554 12223445555554 34 455554
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=94.52 E-value=0.46 Score=34.64 Aligned_cols=94 Identities=16% Similarity=0.111 Sum_probs=54.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh--hhhhhc-CCCccEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ--KLLMGD-YRGADFVL 117 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~--~~L~~~-~~~~D~Vf 117 (220)
..+|+-+|+|..|. .++..+...+-+|+.+|.+ ++.++..++.. .++++.+|.. +.+... ...+|+|+
T Consensus 4 ~m~i~IiG~G~iG~---~~a~~L~~~g~~v~~~d~~-~~~~~~~~~~~-----~~~~~~~d~~~~~~l~~~~~~~~d~vi 74 (140)
T 1lss_A 4 GMYIIIAGIGRVGY---TLAKSLSEKGHDIVLIDID-KDICKKASAEI-----DALVINGDCTKIKTLEDAGIEDADMYI 74 (140)
T ss_dssp -CEEEEECCSHHHH---HHHHHHHHTTCEEEEEESC-HHHHHHHHHHC-----SSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred CCEEEEECCCHHHH---HHHHHHHhCCCeEEEEECC-HHHHHHHHHhc-----CcEEEEcCCCCHHHHHHcCcccCCEEE
Confidence 35788888655554 4444444436789999999 87776554432 2456777753 233222 35789999
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
+-.+. ......+..+.+. +.+ +.+|+
T Consensus 75 ~~~~~--~~~~~~~~~~~~~--~~~-~~ii~ 100 (140)
T 1lss_A 75 AVTGK--EEVNLMSSLLAKS--YGI-NKTIA 100 (140)
T ss_dssp ECCSC--HHHHHHHHHHHHH--TTC-CCEEE
T ss_pred EeeCC--chHHHHHHHHHHH--cCC-CEEEE
Confidence 98765 3333333334444 433 44443
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.35 Score=41.87 Aligned_cols=96 Identities=13% Similarity=0.094 Sum_probs=61.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCc--EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh-hhhhcCCCccEEEE
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGG--RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK-LLMGDYRGADFVLI 118 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~g--rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~-~L~~~~~~~D~Vfi 118 (220)
++|.-||+|..|.+ ||.++...+- +|+.+|++ ++.++.+++. |. +.-...+..+ .+ ...|+||+
T Consensus 34 ~kI~IIG~G~mG~s---lA~~l~~~G~~~~V~~~dr~-~~~~~~a~~~--G~---~~~~~~~~~~~~~----~~aDvVil 100 (314)
T 3ggo_A 34 QNVLIVGVGFMGGS---FAKSLRRSGFKGKIYGYDIN-PESISKAVDL--GI---IDEGTTSIAKVED----FSPDFVML 100 (314)
T ss_dssp SEEEEESCSHHHHH---HHHHHHHTTCCSEEEEECSC-HHHHHHHHHT--TS---CSEEESCTTGGGG----GCCSEEEE
T ss_pred CEEEEEeeCHHHHH---HHHHHHhCCCCCEEEEEECC-HHHHHHHHHC--CC---cchhcCCHHHHhh----ccCCEEEE
Confidence 68999998755543 3333322233 89999999 8887776542 32 1122344444 33 45799999
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
-.+. ....++++.+.+. +++ |. +|+|....++
T Consensus 101 avp~--~~~~~vl~~l~~~--l~~-~~-iv~d~~Svk~ 132 (314)
T 3ggo_A 101 SSPV--RTFREIAKKLSYI--LSE-DA-TVTDQGSVKG 132 (314)
T ss_dssp CSCG--GGHHHHHHHHHHH--SCT-TC-EEEECCSCCT
T ss_pred eCCH--HHHHHHHHHHhhc--cCC-Cc-EEEECCCCcH
Confidence 8887 7778899999988 653 65 4566544443
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.22 Score=43.13 Aligned_cols=102 Identities=11% Similarity=0.037 Sum_probs=69.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcE---EEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc---CCC
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGR---VVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD---YRG 112 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~gr---V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~---~~~ 112 (220)
.+.-+++|+-|| +|-.++.|..| |-+ |.++|.| +...+.-+.|+. ...++.+|..++.+.. ...
T Consensus 14 ~~~~~vidLFaG-~GG~~~g~~~a----G~~~~~v~a~E~d-~~a~~ty~~N~~----~~~~~~~DI~~i~~~~i~~~~~ 83 (295)
T 2qrv_A 14 RKPIRVLSLFDG-IATGLLVLKDL----GIQVDRYIASEVC-EDSITVGMVRHQ----GKIMYVGDVRSVTQKHIQEWGP 83 (295)
T ss_dssp CCCEEEEEETCT-TTHHHHHHHHT----TBCEEEEEEECCC-HHHHHHHHHHTT----TCEEEECCGGGCCHHHHHHTCC
T ss_pred CCCCEEEEeCcC-ccHHHHHHHHC----CCccceEEEEECC-HHHHHHHHHhCC----CCceeCCChHHccHHHhcccCC
Confidence 345679999986 88888888775 333 5899999 888777777763 3467788887764321 247
Q ss_pred ccEEEEcCC---------C-------CCccHHHHHHHHHhhcCCCCCCE-----EEEEecCC
Q 042616 113 ADFVLIDCN---------I-------DIDGHKNVFRAAKESVMHGSGAG-----VIVGYNAL 153 (220)
Q Consensus 113 ~D~VfiD~~---------k-------~~~~y~~~l~~l~~~~~L~~~Gg-----viv~dNv~ 153 (220)
+|+++-..+ + +...+.++++.+... +|+.+ +++..||-
T Consensus 84 ~Dll~ggpPCQ~fS~ag~~r~g~~d~r~~L~~~~~rii~~~---~P~~~~~~P~~~l~ENV~ 142 (295)
T 2qrv_A 84 FDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDA---RPKEGDDRPFFWLFENVV 142 (295)
T ss_dssp CSEEEECCCCGGGBTTCTTCCTTTSTTTTHHHHHHHHHHHH---SCCTTCCCCCEEEEEEES
T ss_pred cCEEEecCCCccccccCccccccccccchhHHHHHHHHHHh---CcccccCCccEEEEEcCc
Confidence 899986631 1 113457777877764 46422 89999996
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.43 Score=38.44 Aligned_cols=74 Identities=8% Similarity=0.108 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcE-EEEEcchhhhhhhcCCCccEEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCI-EFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~V-e~v~gda~~~L~~~~~~~D~Vfi 118 (220)
+.++||-+|+ +|.....+++.+.+.+-+|+++..+ ++..+.... ..+ +++.+|..+.+......+|.||.
T Consensus 20 ~~~~ilVtGa--tG~iG~~l~~~L~~~G~~V~~~~R~-~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~D~vi~ 90 (236)
T 3e8x_A 20 QGMRVLVVGA--NGKVARYLLSELKNKGHEPVAMVRN-EEQGPELRE------RGASDIVVANLEEDFSHAFASIDAVVF 90 (236)
T ss_dssp -CCEEEEETT--TSHHHHHHHHHHHHTTCEEEEEESS-GGGHHHHHH------TTCSEEEECCTTSCCGGGGTTCSEEEE
T ss_pred CCCeEEEECC--CChHHHHHHHHHHhCCCeEEEEECC-hHHHHHHHh------CCCceEEEcccHHHHHHHHcCCCEEEE
Confidence 5678999984 5666667777665557899999999 776544332 257 88899886444444568999998
Q ss_pred cCCC
Q 042616 119 DCNI 122 (220)
Q Consensus 119 D~~k 122 (220)
-+..
T Consensus 91 ~ag~ 94 (236)
T 3e8x_A 91 AAGS 94 (236)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7765
|
| >3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.045 Score=44.51 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=27.6
Q ss_pred CCEEEEEcC-CchHHHHHH--HHHHcCCC-CcEEEEEeCCchh
Q 042616 41 AQLIVMACS-SIAVSRTLA--LVAAARQT-GGRVVCILSGVIG 79 (220)
Q Consensus 41 a~~ILEIGt-g~~G~sTl~--LA~A~~~~-~grV~tIE~d~~~ 79 (220)
++.|.-.++ |++|-+|+. ||.++... +.+|.-||.| +.
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D-~~ 45 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDIS-LP 45 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECC-TT
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECC-CC
Confidence 444444433 568888875 77778776 7899999999 76
|
| >2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.3 Score=41.09 Aligned_cols=39 Identities=13% Similarity=0.078 Sum_probs=27.5
Q ss_pred CCEEEEEc---CCchHHHHHH--HHHHcCCCCcEEEEEeCCchhH
Q 042616 41 AQLIVMAC---SSIAVSRTLA--LVAAARQTGGRVVCILSGVIGD 80 (220)
Q Consensus 41 a~~ILEIG---tg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~ 80 (220)
.+.|.-.+ -|++|-+|+. ||.++...|.+|.-||.| ++.
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D-~q~ 77 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKD-LQA 77 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEC-TTC
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCC-CCC
Confidence 44454454 4668888875 676666557799999999 775
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=94.20 E-value=0.07 Score=46.63 Aligned_cols=54 Identities=15% Similarity=0.065 Sum_probs=38.4
Q ss_pred CcEEEE-EcchhhhhhhcC-CCccEEEEcCCCCCc--------cH----HHHHHHHHhhcCCCCCCEEEEE
Q 042616 93 NCIEFV-KGDAQKLLMGDY-RGADFVLIDCNIDID--------GH----KNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 93 ~~Ve~v-~gda~~~L~~~~-~~~D~VfiD~~k~~~--------~y----~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
...+++ +||+.+.|..+. ++||+||+|++-... .| .+++..+.+. |++ ||+|++
T Consensus 37 ~~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rv--Lk~-~G~i~i 104 (319)
T 1eg2_A 37 TTRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERV--LSP-TGSIAI 104 (319)
T ss_dssp CEEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHH--EEE-EEEEEE
T ss_pred ccceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHH--cCC-CeEEEE
Confidence 347888 999999987664 589999999985211 23 4556666777 776 666554
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.38 Score=36.64 Aligned_cols=76 Identities=21% Similarity=0.067 Sum_probs=46.5
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh--hhhhhc-CCCcc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ--KLLMGD-YRGAD 114 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~--~~L~~~-~~~~D 114 (220)
....++|+-+|+|..|...+. .+...+.+|+.+|.+ ++.++.++. . ..+.++.+|+. +.+... ...+|
T Consensus 16 ~~~~~~v~IiG~G~iG~~la~---~L~~~g~~V~vid~~-~~~~~~~~~---~--~g~~~~~~d~~~~~~l~~~~~~~ad 86 (155)
T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIAN---LASSSGHSVVVVDKN-EYAFHRLNS---E--FSGFTVVGDAAEFETLKECGMEKAD 86 (155)
T ss_dssp -CCCCEEEEECCSHHHHHHHH---HHHHTTCEEEEEESC-GGGGGGSCT---T--CCSEEEESCTTSHHHHHTTTGGGCS
T ss_pred ccCCCcEEEECCCHHHHHHHH---HHHhCCCeEEEEECC-HHHHHHHHh---c--CCCcEEEecCCCHHHHHHcCcccCC
Confidence 345678999997666654443 333336699999999 776654331 1 12456677753 333332 35689
Q ss_pred EEEEcCCC
Q 042616 115 FVLIDCNI 122 (220)
Q Consensus 115 ~VfiD~~k 122 (220)
+||+-.+.
T Consensus 87 ~Vi~~~~~ 94 (155)
T 2g1u_A 87 MVFAFTND 94 (155)
T ss_dssp EEEECSSC
T ss_pred EEEEEeCC
Confidence 99987765
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.087 Score=46.14 Aligned_cols=96 Identities=10% Similarity=0.008 Sum_probs=61.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCch---hHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVI---GDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~---~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
.++||-+|+|++|..++.+|++. +.+|++++.+ + +..+.+++. |. +.+. ..+..+.+......+|+||
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~---Ga~Vi~~~~~-~~~~~~~~~~~~~--ga-~~v~--~~~~~~~~~~~~~~~d~vi 251 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTY---GLEVWMANRR-EPTEVEQTVIEET--KT-NYYN--SSNGYDKLKDSVGKFDVII 251 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHH---TCEEEEEESS-CCCHHHHHHHHHH--TC-EEEE--CTTCSHHHHHHHCCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCEEEEEeCC-ccchHHHHHHHHh--CC-ceec--hHHHHHHHHHhCCCCCEEE
Confidence 78999999888898888888875 5699999999 7 777777653 22 2221 1122122211125799987
Q ss_pred EcCCCCCccHHHHH-HHHHhhcCCCCCCEEEEEecCC
Q 042616 118 IDCNIDIDGHKNVF-RAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 118 iD~~k~~~~y~~~l-~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
--... . ..+ +.+.+. +++ ||.+|.-...
T Consensus 252 d~~g~--~---~~~~~~~~~~--l~~-~G~iv~~g~~ 280 (366)
T 2cdc_A 252 DATGA--D---VNILGNVIPL--LGR-NGVLGLFGFS 280 (366)
T ss_dssp ECCCC--C---THHHHHHGGG--EEE-EEEEEECSCC
T ss_pred ECCCC--h---HHHHHHHHHH--Hhc-CCEEEEEecC
Confidence 54443 2 234 667776 665 7877765443
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.94 E-value=0.1 Score=44.74 Aligned_cols=95 Identities=7% Similarity=-0.079 Sum_probs=57.7
Q ss_pred EEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcC
Q 042616 43 LIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDC 120 (220)
Q Consensus 43 ~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~ 120 (220)
+||-+|+ |++|..++.+|++. +.+|++++.+ +++.+.+++. |...-+.....+ .+.+..+ ...+|+|| |+
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~---Ga~vi~~~~~-~~~~~~~~~l--Ga~~~i~~~~~~-~~~~~~~~~~~~d~vi-d~ 223 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKR---GYTVEASTGK-AAEHDYLRVL--GAKEVLAREDVM-AERIRPLDKQRWAAAV-DP 223 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT---TCCEEEEESC-TTCHHHHHHT--TCSEEEECC----------CCSCCEEEEE-EC
T ss_pred eEEEecCCCHHHHHHHHHHHHC---CCEEEEEECC-HHHHHHHHHc--CCcEEEecCCcH-HHHHHHhcCCcccEEE-EC
Confidence 7999996 88999999998875 6789999999 8888888763 221111111111 1222222 24699876 55
Q ss_pred CCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 121 NIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 121 ~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.- .. .++.+.+. +++ ||.++.-...
T Consensus 224 ~g--~~---~~~~~~~~--l~~-~G~~v~~G~~ 248 (328)
T 1xa0_A 224 VG--GR---TLATVLSR--MRY-GGAVAVSGLT 248 (328)
T ss_dssp ST--TT---THHHHHHT--EEE-EEEEEECSCC
T ss_pred Cc--HH---HHHHHHHh--hcc-CCEEEEEeec
Confidence 43 21 35666666 665 8887765443
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.15 Score=45.37 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=60.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.++++|+-+|+|.+|..++.++.++ |.+|+.+|++ ++.++.+++.+.. .+.....+..+ +.......|+|+.
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~---Ga~V~~~d~~-~~~l~~~~~~~g~---~~~~~~~~~~~-l~~~l~~aDvVi~ 237 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGM---GATVTVLDIN-IDKLRQLDAEFCG---RIHTRYSSAYE-LEGAVKRADLVIG 237 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHT---TCEEEEEESC-HHHHHHHHHHTTT---SSEEEECCHHH-HHHHHHHCSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEeCC-HHHHHHHHHhcCC---eeEeccCCHHH-HHHHHcCCCEEEE
Confidence 4678999999988898888777764 5699999999 8888877765531 12222222222 1122236899988
Q ss_pred cCCCCCccHHH-HHHHHHhhcCCCCCCEEEEE
Q 042616 119 DCNIDIDGHKN-VFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 119 D~~k~~~~y~~-~l~~l~~~~~L~~~Ggviv~ 149 (220)
-.......... +.+...+. ++| |++||.
T Consensus 238 ~~~~p~~~t~~li~~~~l~~--mk~-g~~iV~ 266 (377)
T 2vhw_A 238 AVLVPGAKAPKLVSNSLVAH--MKP-GAVLVD 266 (377)
T ss_dssp CCCCTTSCCCCCBCHHHHTT--SCT-TCEEEE
T ss_pred CCCcCCCCCcceecHHHHhc--CCC-CcEEEE
Confidence 44320011111 12444555 554 887764
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.2 Score=44.33 Aligned_cols=101 Identities=11% Similarity=0.083 Sum_probs=60.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.++++|+-+|+|.+|..++.++.+. |.+|+.+|.+ ++.++.+++.+. ..+.....+..++ ......+|+|+.
T Consensus 164 l~~~~V~ViGaG~iG~~~a~~l~~~---Ga~V~~~d~~-~~~~~~~~~~~g---~~~~~~~~~~~~l-~~~~~~~DvVi~ 235 (369)
T 2eez_A 164 VAPASVVILGGGTVGTNAAKIALGM---GAQVTILDVN-HKRLQYLDDVFG---GRVITLTATEANI-KKSVQHADLLIG 235 (369)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHT---TCEEEEEESC-HHHHHHHHHHTT---TSEEEEECCHHHH-HHHHHHCSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEECC-HHHHHHHHHhcC---ceEEEecCCHHHH-HHHHhCCCEEEE
Confidence 4578999999988888877777654 6699999999 888877765442 2243333333322 222246899976
Q ss_pred cCCCCCccHHH-HHHHHHhhcCCCCCCEEEEEe
Q 042616 119 DCNIDIDGHKN-VFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 119 D~~k~~~~y~~-~l~~l~~~~~L~~~Ggviv~d 150 (220)
-.......... +.+...+. +++ ||+||.-
T Consensus 236 ~~g~~~~~~~~li~~~~l~~--mk~-gg~iV~v 265 (369)
T 2eez_A 236 AVLVPGAKAPKLVTRDMLSL--MKE-GAVIVDV 265 (369)
T ss_dssp CCC-------CCSCHHHHTT--SCT-TCEEEEC
T ss_pred CCCCCccccchhHHHHHHHh--hcC-CCEEEEE
Confidence 55431001111 13455565 654 8876654
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.56 Score=42.76 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=65.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-----cc---------CCcEEEEEcchhhhhh
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-----RY---------ANCIEFVKGDAQKLLM 107 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-----g~---------~~~Ve~v~gda~~~L~ 107 (220)
.+|.-||+|..|. .+|..+...+-+|+++|.+ ++.++..++... ++ ..++++ ..|..+.+
T Consensus 3 mkI~VIG~G~vG~---~lA~~La~~G~~V~~~D~~-~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea~- 76 (450)
T 3gg2_A 3 LDIAVVGIGYVGL---VSATCFAELGANVRCIDTD-RNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQAV- 76 (450)
T ss_dssp CEEEEECCSHHHH---HHHHHHHHTTCEEEEECSC-HHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHHG-
T ss_pred CEEEEECcCHHHH---HHHHHHHhcCCEEEEEECC-HHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHHH-
Confidence 4688888755554 4444443336689999999 888877665321 11 233443 34555544
Q ss_pred hcCCCccEEEEcCCCCCc--------cHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 108 GDYRGADFVLIDCNIDID--------GHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k~~~--------~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
...|+||+--+.+.. .....++.+.+. ++ +|.+||.-....+|
T Consensus 77 ---~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~--l~-~g~iVV~~STv~pg 127 (450)
T 3gg2_A 77 ---PEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRA--MS-RYILIVTKSTVPVG 127 (450)
T ss_dssp ---GGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHH--CC-SCEEEEECSCCCTT
T ss_pred ---hcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhh--CC-CCCEEEEeeeCCCc
Confidence 357999998766111 457778888888 75 48888877666666
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.043 Score=46.81 Aligned_cols=121 Identities=9% Similarity=0.012 Sum_probs=77.1
Q ss_pred CCCChhHHHHHHHHHh--hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 22 RGKEPDVGEFISALAA--GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~--~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
...+.....|+...-+ ..+...|||+||+ .|-++-..+.... ..+|+++|.- +...+.- ..++ |. +.|+|
T Consensus 58 ~yrSRa~~KL~ei~ek~~l~~g~~VvDLGaa-pGGWSq~~a~~~g--~~~V~avdvG-~~ghe~P-~~~~s~gw-n~v~f 131 (267)
T 3p8z_A 58 HAVSRGSAKLQWFVERNMVIPEGRVIDLGCG-RGGWSYYCAGLKK--VTEVRGYTKG-GPGHEEP-VPMSTYGW-NIVKL 131 (267)
T ss_dssp CCSSTHHHHHHHHHHTTSSCCCEEEEEESCT-TSHHHHHHHTSTT--EEEEEEECCC-STTSCCC-CCCCCTTT-TSEEE
T ss_pred CccchHHHHHHHHHHhcCCCCCCEEEEcCCC-CCcHHHHHHHhcC--CCEEEEEecC-CCCccCc-chhhhcCc-CceEE
Confidence 4566666666655544 3556789999995 8888886665322 3579999998 4433211 1122 43 56999
Q ss_pred EEc-chhhhhhhcCCCccEEEEcCCCCCc-------cHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 98 VKG-DAQKLLMGDYRGADFVLIDCNIDID-------GHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 98 v~g-da~~~L~~~~~~~D~VfiD~~k~~~-------~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
+.+ |....- . .++|.|+.|-..... ...++|+.+.+- |.+ |.+++ -||.+.
T Consensus 132 k~gvDv~~~~-~--~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~w--L~~-~~fc~--KVl~py 190 (267)
T 3p8z_A 132 MSGKDVFYLP-P--EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPW--LKN-NQFCI--KVLNPY 190 (267)
T ss_dssp ECSCCGGGCC-C--CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGG--CSS-CEEEE--EESCCC
T ss_pred EeccceeecC-C--ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHh--ccc-CCEEE--EEccCC
Confidence 999 875433 2 679999999766222 224467777787 765 54444 377654
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.029 Score=48.57 Aligned_cols=120 Identities=11% Similarity=0.001 Sum_probs=68.7
Q ss_pred CCChhHHHHHHHHHh--hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCc-EEEEE
Q 042616 23 GKEPDVGEFISALAA--GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANC-IEFVK 99 (220)
Q Consensus 23 ~~~p~~~~~L~~La~--~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~-Ve~v~ 99 (220)
......-.|+...-+ ..+..+|||+||+ .|.++-..+.-.+ ...|++++.. ......+..+ ..+..+ +.+..
T Consensus 71 YrSRAAfKL~ei~eK~~Lk~~~~VLDLGaA-PGGWsQvAa~~~g--v~sV~GvdvG-~d~~~~pi~~-~~~g~~ii~~~~ 145 (282)
T 3gcz_A 71 AVSRGSAKLRWMEERGYVKPTGIVVDLGCG-RGGWSYYAASLKN--VKKVMAFTLG-VQGHEKPIMR-TTLGWNLIRFKD 145 (282)
T ss_dssp CSSTHHHHHHHHHHTTSCCCCEEEEEETCT-TCHHHHHHHTSTT--EEEEEEECCC-CTTSCCCCCC-CBTTGGGEEEEC
T ss_pred EecHHHHHHHHHHHhcCCCCCCEEEEeCCC-CCHHHHHHHHhcC--CCeeeeEEec-cCcccccccc-ccCCCceEEeeC
Confidence 355555555555443 2456789999995 8988886664221 3578899887 4322212111 111123 44433
Q ss_pred c-chhhhhhhcCCCccEEEEcCCCCCcc-----H--HHHHHHHHhhcCCCCCC--EEEEEecCCC
Q 042616 100 G-DAQKLLMGDYRGADFVLIDCNIDIDG-----H--KNVFRAAKESVMHGSGA--GVIVGYNALP 154 (220)
Q Consensus 100 g-da~~~L~~~~~~~D~VfiD~~k~~~~-----y--~~~l~~l~~~~~L~~~G--gviv~dNv~~ 154 (220)
+ |..+ ++ ..++|+|+-|...+.+. + ...++.+... |+| | |.+|+. ++.
T Consensus 146 ~~dv~~-l~--~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~--Lk~-g~~G~Fv~K-vF~ 203 (282)
T 3gcz_A 146 KTDVFN-ME--VIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQW--LQE-GNYTEFCIK-VLC 203 (282)
T ss_dssp SCCGGG-SC--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHH--HHH-HCCCEEEEE-ESC
T ss_pred Ccchhh-cC--CCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHH--cCC-CCCCcEEEE-Eec
Confidence 3 3322 22 37899999998763211 1 2345556666 766 7 888886 665
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=93.58 E-value=0.25 Score=43.09 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=49.9
Q ss_pred CCEEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHHHHH---Hhc-ccCCcEEEE-Ecc----h----hhh
Q 042616 41 AQLIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDASKK---SLG-RYANCIEFV-KGD----A----QKL 105 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~Ar~---~l~-g~~~~Ve~v-~gd----a----~~~ 105 (220)
++.|+-+|.+|+|-||+. ||..+.+.+++|.-++.| .......++ ..+ ....++.++ .+. + .+.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D-~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~ 183 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD-TFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDA 183 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC-CSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC-CcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHH
Confidence 456777788779998875 666666668999999988 654432211 111 113457777 432 1 121
Q ss_pred hhh-cCCCccEEEEcCCC
Q 042616 106 LMG-DYRGADFVLIDCNI 122 (220)
Q Consensus 106 L~~-~~~~~D~VfiD~~k 122 (220)
+.. ....||+|+||++.
T Consensus 184 l~~~~~~~yD~VIIDTpg 201 (320)
T 1zu4_A 184 IKKAKEQNYDLLLIDTAG 201 (320)
T ss_dssp HHHHHHTTCSEEEEECCC
T ss_pred HHHHHhcCCCEEEEcCCC
Confidence 211 13689999999987
|
| >3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.093 Score=44.98 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=29.5
Q ss_pred CCCCEEEEEcC-CchHHHHHH--HHHHcCCCCcEEEEEeCCchhH
Q 042616 39 NNAQLIVMACS-SIAVSRTLA--LVAAARQTGGRVVCILSGVIGD 80 (220)
Q Consensus 39 ~~a~~ILEIGt-g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~ 80 (220)
.+++.|+-.++ |+.|-+|+. ||.++.+.+.+|.-||.| +..
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D-~~~ 133 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCD-MRK 133 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECC-TTT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEecc-CCC
Confidence 34566666654 557877774 777777767899999999 753
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.23 Score=43.69 Aligned_cols=100 Identities=12% Similarity=0.019 Sum_probs=68.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcC--CCccEEEEc
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDY--RGADFVLID 119 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~--~~~D~VfiD 119 (220)
-+++|+-|| +|-.++.|..|--. .-.|.++|.| +.+.+.-+.|+. ...++++|..++.+... ..+|+++..
T Consensus 4 ~~~idLFaG-~GG~~~G~~~aG~~-~~~v~a~e~d-~~a~~ty~~N~~----~~~~~~~DI~~~~~~~~~~~~~D~l~gg 76 (333)
T 4h0n_A 4 HKILELYSG-IGGMHCAWKESGLD-GEIVAAVDIN-TVANSVYKHNFP----ETNLLNRNIQQLTPQVIKKWNVDTILMS 76 (333)
T ss_dssp EEEEEETCT-TTHHHHHHHHHTCS-EEEEEEECCC-HHHHHHHHHHCT----TSCEECCCGGGCCHHHHHHTTCCEEEEC
T ss_pred CEEEEECcC-ccHHHHHHHHcCCC-ceEEEEEeCC-HHHHHHHHHhCC----CCceeccccccCCHHHhccCCCCEEEec
Confidence 468999986 88888988876211 1347899999 888888888874 23456778776543211 368999855
Q ss_pred CCC---------------CCccHHHHHHHHHhhcCCC-CCCEEEEEecCC
Q 042616 120 CNI---------------DIDGHKNVFRAAKESVMHG-SGAGVIVGYNAL 153 (220)
Q Consensus 120 ~~k---------------~~~~y~~~l~~l~~~~~L~-~~Ggviv~dNv~ 153 (220)
.+= ++..+.++++.+... + | -+++..||-
T Consensus 77 pPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~---~~P--~~~vlENV~ 121 (333)
T 4h0n_A 77 PPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQL---DNV--DYILMENVK 121 (333)
T ss_dssp CCCCCSEETTEECCTTCTTSCCHHHHHHHGGGC---TTC--CEEEEEECT
T ss_pred CCCcchhhhhhccCCcCcccccHHHHHHHHHHh---cCC--CEEEEecch
Confidence 431 124567778777664 3 4 688899996
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=93.47 E-value=0.49 Score=40.66 Aligned_cols=97 Identities=12% Similarity=0.051 Sum_probs=62.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----c--cCC--cEEEEEcchhhhhhhcCCC
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----R--YAN--CIEFVKGDAQKLLMGDYRG 112 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g--~~~--~Ve~v~gda~~~L~~~~~~ 112 (220)
..+|.-||+|..|.. +|..+...+-+|+.++.+ ++.++..++... + ... ++.....+..+.+ ..
T Consensus 4 ~mki~iiG~G~~G~~---~a~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 75 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHA---FAAYLALKGQSVLAWDID-AQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----KD 75 (359)
T ss_dssp CCEEEEECCSHHHHH---HHHHHHHTTCEEEEECSC-HHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----TT
T ss_pred cCeEEEECCCHHHHH---HHHHHHhCCCEEEEEeCC-HHHHHHHHhcCCeEEeccccccccccceecCCHHHHH----hc
Confidence 367999998765643 333332225689999999 888777665421 1 100 0112334554544 46
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+|+||+-.+. ....++++.+.+. +.+ |.+||..
T Consensus 76 ~D~vi~~v~~--~~~~~~~~~l~~~--l~~-~~~vv~~ 108 (359)
T 1bg6_A 76 ADVILIVVPA--IHHASIAANIASY--ISE-GQLIILN 108 (359)
T ss_dssp CSEEEECSCG--GGHHHHHHHHGGG--CCT-TCEEEES
T ss_pred CCEEEEeCCc--hHHHHHHHHHHHh--CCC-CCEEEEc
Confidence 8999998887 6778889988887 754 8877765
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.11 Score=44.67 Aligned_cols=93 Identities=9% Similarity=-0.040 Sum_probs=60.7
Q ss_pred EEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc-h-hhhhhhc-CCCccEEEE
Q 042616 43 LIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD-A-QKLLMGD-YRGADFVLI 118 (220)
Q Consensus 43 ~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd-a-~~~L~~~-~~~~D~Vfi 118 (220)
+||-+|+ |++|..++.+|++. +.+|++++.+ +++.+.+++. |. +. ++.-+ . .+.+..+ ...+|++|
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~---Ga~vi~~~~~-~~~~~~~~~l--Ga-~~--v~~~~~~~~~~~~~~~~~~~d~vi- 222 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKR---GYDVVASTGN-REAADYLKQL--GA-SE--VISREDVYDGTLKALSKQQWQGAV- 222 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHH---TCCEEEEESS-SSTHHHHHHH--TC-SE--EEEHHHHCSSCCCSSCCCCEEEEE-
T ss_pred eEEEECCCCHHHHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHHc--CC-cE--EEECCCchHHHHHHhhcCCccEEE-
Confidence 7999996 88999999999875 5689999999 8888888763 22 22 12211 1 1112122 24689876
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|+.- . +.++.+.+. +++ ||.++.-...
T Consensus 223 d~~g--~---~~~~~~~~~--l~~-~G~iv~~G~~ 249 (330)
T 1tt7_A 223 DPVG--G---KQLASLLSK--IQY-GGSVAVSGLT 249 (330)
T ss_dssp ESCC--T---HHHHHHHTT--EEE-EEEEEECCCS
T ss_pred ECCc--H---HHHHHHHHh--hcC-CCEEEEEecC
Confidence 5544 2 356777777 765 8888776543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.55 Score=33.12 Aligned_cols=85 Identities=14% Similarity=0.024 Sum_probs=53.6
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCC-cEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh--hhhhcCCCccEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTG-GRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK--LLMGDYRGADFVL 117 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~-grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~--~L~~~~~~~D~Vf 117 (220)
.++|+-+|+|..|...+. .+...+ -+|+.++.+ ++..+..+. ..++++..|..+ .+......+|+||
T Consensus 5 ~~~v~I~G~G~iG~~~~~---~l~~~g~~~v~~~~r~-~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~d~vi 74 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAA---LLKTSSNYSVTVADHD-LAALAVLNR------MGVATKQVDAKDEAGLAKALGGFDAVI 74 (118)
T ss_dssp CEEEEEECCSHHHHHHHH---HHHHCSSEEEEEEESC-HHHHHHHHT------TTCEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred cCeEEEECCCHHHHHHHH---HHHhCCCceEEEEeCC-HHHHHHHHh------CCCcEEEecCCCHHHHHHHHcCCCEEE
Confidence 367898997656654443 333335 689999999 877765541 245666666542 2333346799999
Q ss_pred EcCCCCCccHHHHHHHHHhh
Q 042616 118 IDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~ 137 (220)
.-.+. .....+.+.+.+.
T Consensus 75 ~~~~~--~~~~~~~~~~~~~ 92 (118)
T 3ic5_A 75 SAAPF--FLTPIIAKAAKAA 92 (118)
T ss_dssp ECSCG--GGHHHHHHHHHHT
T ss_pred ECCCc--hhhHHHHHHHHHh
Confidence 87765 5556666666654
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.098 Score=45.64 Aligned_cols=121 Identities=9% Similarity=-0.035 Sum_probs=69.0
Q ss_pred CCCChhHHHHHHHHHh--hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccC-CcEEEE
Q 042616 22 RGKEPDVGEFISALAA--GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYA-NCIEFV 98 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~--~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~-~~Ve~v 98 (220)
.......-.|+...-. ..+.+.|||+||+ .|-++-.+++-.+ ...|+++|.. .......+. ...+. +-+.+.
T Consensus 61 ~yrSRaa~KL~ei~ek~l~~~g~~vlDLGaa-PGgWsqva~~~~g--v~sV~Gvdlg-~~~~~~P~~-~~~~~~~iv~~~ 135 (300)
T 3eld_A 61 ISVSRGAAKIRWLHERGYLRITGRVLDLGCG-RGGWSYYAAAQKE--VMSVKGYTLG-IEGHEKPIH-MQTLGWNIVKFK 135 (300)
T ss_dssp CCSSTTHHHHHHHHHHTSCCCCEEEEEETCT-TCHHHHHHHTSTT--EEEEEEECCC-CTTSCCCCC-CCBTTGGGEEEE
T ss_pred CccchHHHHHHHHHHhCCCCCCCEEEEcCCC-CCHHHHHHHHhcC--CceeeeEEec-ccccccccc-ccccCCceEEee
Confidence 3455555555555443 2346899999985 9999988886321 3578888886 331100000 01111 224443
Q ss_pred Ec-chhhhhhhcCCCccEEEEcCCCCCccH-------HHHHHHHHhhcCCCCCC-EEEEEecCCC
Q 042616 99 KG-DAQKLLMGDYRGADFVLIDCNIDIDGH-------KNVFRAAKESVMHGSGA-GVIVGYNALP 154 (220)
Q Consensus 99 ~g-da~~~L~~~~~~~D~VfiD~~k~~~~y-------~~~l~~l~~~~~L~~~G-gviv~dNv~~ 154 (220)
.+ |... ++ ..++|+|+.|...+.+.. ..+++.+... |+| | |-+|+. +|.
T Consensus 136 ~~~di~~-l~--~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~--Lkp-G~G~FV~K-vF~ 193 (300)
T 3eld_A 136 DKSNVFT-MP--TEPSDTLLCDIGESSSNPLVERDRTMKVLENFERW--KHV-NTENFCVK-VLA 193 (300)
T ss_dssp CSCCTTT-SC--CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHH--CCT-TCCEEEEE-ESS
T ss_pred cCceeee-cC--CCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHH--hcC-CCCcEEEE-ecc
Confidence 23 2222 11 368999999987632221 3446666777 876 8 888887 554
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.44 Score=35.40 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=54.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh--hhhhc-CCCccEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK--LLMGD-YRGADFVL 117 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~--~L~~~-~~~~D~Vf 117 (220)
.++|+-+|+|..|. .++..+...+-+|+.+|.+ ++.++.+++. .+.++.+|+.+ .+... ...+|+|+
T Consensus 6 ~~~v~I~G~G~iG~---~la~~L~~~g~~V~~id~~-~~~~~~~~~~------~~~~~~gd~~~~~~l~~~~~~~~d~vi 75 (141)
T 3llv_A 6 RYEYIVIGSEAAGV---GLVRELTAAGKKVLAVDKS-KEKIELLEDE------GFDAVIADPTDESFYRSLDLEGVSAVL 75 (141)
T ss_dssp CCSEEEECCSHHHH---HHHHHHHHTTCCEEEEESC-HHHHHHHHHT------TCEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred CCEEEEECCCHHHH---HHHHHHHHCCCeEEEEECC-HHHHHHHHHC------CCcEEECCCCCHHHHHhCCcccCCEEE
Confidence 35788889754444 4444444446789999999 8887766542 36778888753 44433 35789999
Q ss_pred EcCCCCCccHHHHHHHHHhh
Q 042616 118 IDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~ 137 (220)
+-.+. ...-......++..
T Consensus 76 ~~~~~-~~~n~~~~~~a~~~ 94 (141)
T 3llv_A 76 ITGSD-DEFNLKILKALRSV 94 (141)
T ss_dssp ECCSC-HHHHHHHHHHHHHH
T ss_pred EecCC-HHHHHHHHHHHHHh
Confidence 87664 12223344455544
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=93.26 E-value=0.13 Score=44.85 Aligned_cols=99 Identities=10% Similarity=0.081 Sum_probs=56.8
Q ss_pred CCC-CEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhH----HHHHHHHhcccCCc-EEEEE---cchhhhhhh
Q 042616 39 NNA-QLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGD----IDASKKSLGRYANC-IEFVK---GDAQKLLMG 108 (220)
Q Consensus 39 ~~a-~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~----~~~Ar~~l~g~~~~-Ve~v~---gda~~~L~~ 108 (220)
.+. ++||-+|+ |++|..++.+|++. +.+++++..+ ++. .+.+++ + |. +. +.... .+..+.+.+
T Consensus 165 ~~g~~~VlV~Ga~G~vG~~aiqlak~~---Ga~vi~~~~~-~~~~~~~~~~~~~-l-Ga-~~vi~~~~~~~~~~~~~i~~ 237 (364)
T 1gu7_A 165 TPGKDWFIQNGGTSAVGKYASQIGKLL---NFNSISVIRD-RPNLDEVVASLKE-L-GA-TQVITEDQNNSREFGPTIKE 237 (364)
T ss_dssp CTTTCEEEESCTTSHHHHHHHHHHHHH---TCEEEEEECC-CTTHHHHHHHHHH-H-TC-SEEEEHHHHHCGGGHHHHHH
T ss_pred CCCCcEEEECCCCcHHHHHHHHHHHHC---CCEEEEEecC-ccccHHHHHHHHh-c-CC-eEEEecCccchHHHHHHHHH
Confidence 345 89999996 88999999999875 6788888766 443 344432 2 32 22 11111 222223322
Q ss_pred c----CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 109 D----YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 109 ~----~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+ ...+|+|| |+-- . .... .+.+. |++ ||.++.-...
T Consensus 238 ~t~~~~~g~Dvvi-d~~G--~--~~~~-~~~~~--l~~-~G~~v~~g~~ 277 (364)
T 1gu7_A 238 WIKQSGGEAKLAL-NCVG--G--KSST-GIARK--LNN-NGLMLTYGGM 277 (364)
T ss_dssp HHHHHTCCEEEEE-ESSC--H--HHHH-HHHHT--SCT-TCEEEECCCC
T ss_pred HhhccCCCceEEE-ECCC--c--hhHH-HHHHH--hcc-CCEEEEecCC
Confidence 1 24799887 5443 2 2223 45566 765 7777765443
|
| >3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.13 Score=41.99 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=23.9
Q ss_pred EEEEcC-CchHHHHHH--HHHHcCCCCcEEEEEeCCch
Q 042616 44 IVMACS-SIAVSRTLA--LVAAARQTGGRVVCILSGVI 78 (220)
Q Consensus 44 ILEIGt-g~~G~sTl~--LA~A~~~~~grV~tIE~d~~ 78 (220)
|.-.++ |++|-+|+. ||.++...+.+|.-||.| +
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D-~ 41 (260)
T 3q9l_A 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFA-I 41 (260)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC-C
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECC-C
Confidence 333343 558887775 676666657799999999 7
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=93.14 E-value=0.54 Score=35.60 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=48.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCch-hHHHHHHHHhcccCCcEEEEEcchh--hhhhhc-CCCccEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVI-GDIDASKKSLGRYANCIEFVKGDAQ--KLLMGD-YRGADFV 116 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~-~~~~~Ar~~l~g~~~~Ve~v~gda~--~~L~~~-~~~~D~V 116 (220)
.++|+-+|+|.+| ..++..+...+-+|+.||.+ + +.++..+..+. ..++++.||+. +.+... ....|.|
T Consensus 3 ~~~vlI~G~G~vG---~~la~~L~~~g~~V~vid~~-~~~~~~~~~~~~~---~~~~~i~gd~~~~~~l~~a~i~~ad~v 75 (153)
T 1id1_A 3 KDHFIVCGHSILA---INTILQLNQRGQNVTVISNL-PEDDIKQLEQRLG---DNADVIPGDSNDSSVLKKAGIDRCRAI 75 (153)
T ss_dssp CSCEEEECCSHHH---HHHHHHHHHTTCCEEEEECC-CHHHHHHHHHHHC---TTCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred CCcEEEECCCHHH---HHHHHHHHHCCCCEEEEECC-ChHHHHHHHHhhc---CCCeEEEcCCCCHHHHHHcChhhCCEE
Confidence 4568888865555 44444444436689999997 5 54544444332 34788999985 344332 4678999
Q ss_pred EEcCCC
Q 042616 117 LIDCNI 122 (220)
Q Consensus 117 fiD~~k 122 (220)
++-.+.
T Consensus 76 i~~~~~ 81 (153)
T 1id1_A 76 LALSDN 81 (153)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 988765
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=93.12 E-value=0.71 Score=38.49 Aligned_cols=89 Identities=9% Similarity=0.103 Sum_probs=55.6
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCc--EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCC-CccEEEE
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGG--RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYR-GADFVLI 118 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~g--rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~-~~D~Vfi 118 (220)
++|.-||+|..|.. ++..+...+- +|+.+|++ ++..+.+++. |... ....+..+.+ . ..|+||+
T Consensus 2 ~~I~iIG~G~mG~~---~a~~l~~~g~~~~V~~~d~~-~~~~~~~~~~--g~~~---~~~~~~~~~~----~~~aDvVil 68 (281)
T 2g5c_A 2 QNVLIVGVGFMGGS---FAKSLRRSGFKGKIYGYDIN-PESISKAVDL--GIID---EGTTSIAKVE----DFSPDFVML 68 (281)
T ss_dssp CEEEEESCSHHHHH---HHHHHHHTTCCSEEEEECSC-HHHHHHHHHT--TSCS---EEESCGGGGG----GTCCSEEEE
T ss_pred cEEEEEecCHHHHH---HHHHHHhcCCCcEEEEEeCC-HHHHHHHHHC--CCcc---cccCCHHHHh----cCCCCEEEE
Confidence 46888998755554 3333332233 79999999 8877766532 3211 1223444433 3 6899999
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
-.+. ....++++.+.+. +++ +.+|+
T Consensus 69 avp~--~~~~~v~~~l~~~--l~~-~~iv~ 93 (281)
T 2g5c_A 69 SSPV--RTFREIAKKLSYI--LSE-DATVT 93 (281)
T ss_dssp CSCH--HHHHHHHHHHHHH--SCT-TCEEE
T ss_pred cCCH--HHHHHHHHHHHhh--CCC-CcEEE
Confidence 8877 6667888888887 654 66544
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.11 Score=45.28 Aligned_cols=98 Identities=12% Similarity=-0.015 Sum_probs=55.0
Q ss_pred hCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccE
Q 042616 38 GNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~ 115 (220)
..+.++||-+|+ |++|..++.||+++. +.+|++++ + ++..+.++ + |...-+. ...+..+.+..+ .+.+|+
T Consensus 140 ~~~g~~VlV~Ga~G~vG~~a~qla~~~g--~~~V~~~~-~-~~~~~~~~--~-ga~~~~~-~~~~~~~~~~~~~~~g~Dv 211 (349)
T 4a27_A 140 LREGMSVLVHSAGGGVGQAVAQLCSTVP--NVTVFGTA-S-TFKHEAIK--D-SVTHLFD-RNADYVQEVKRISAEGVDI 211 (349)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHTTST--TCEEEEEE-C-GGGHHHHG--G-GSSEEEE-TTSCHHHHHHHHCTTCEEE
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcC--CcEEEEeC-C-HHHHHHHH--c-CCcEEEc-CCccHHHHHHHhcCCCceE
Confidence 455789999997 778888888887642 46899888 4 46666665 2 3211122 223333333332 357998
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
||--... . .++.+.+. |++ ||.++.-..
T Consensus 212 v~d~~g~--~----~~~~~~~~--l~~-~G~~v~~G~ 239 (349)
T 4a27_A 212 VLDCLCG--D----NTGKGLSL--LKP-LGTYILYGS 239 (349)
T ss_dssp EEEECC-------------CTT--EEE-EEEEEEEC-
T ss_pred EEECCCc--h----hHHHHHHH--hhc-CCEEEEECC
Confidence 7743332 2 23566666 765 777765543
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.45 Score=40.79 Aligned_cols=95 Identities=14% Similarity=0.047 Sum_probs=68.0
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCN 121 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~ 121 (220)
+|||+-|| +|-.++.|-.| |- .|.++|.| +.+.+.-+.|+. -+++.+|..++-+.....+|+++-..+
T Consensus 2 kvidLFsG-~GG~~~G~~~a----G~~~v~a~e~d-~~a~~ty~~N~~-----~~~~~~DI~~i~~~~~~~~D~l~ggpP 70 (331)
T 3ubt_Y 2 NLISLFSG-AGGLDLGFQKA----GFRIICANEYD-KSIWKTYESNHS-----AKLIKGDISKISSDEFPKCDGIIGGPP 70 (331)
T ss_dssp EEEEESCT-TCHHHHHHHHT----TCEEEEEEECC-TTTHHHHHHHCC-----SEEEESCGGGCCGGGSCCCSEEECCCC
T ss_pred eEEEeCcC-ccHHHHHHHHC----CCEEEEEEeCC-HHHHHHHHHHCC-----CCcccCChhhCCHhhCCcccEEEecCC
Confidence 68999986 78888888775 44 45789999 888888888763 256789988865544567898863321
Q ss_pred C---------------CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 122 I---------------DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 122 k---------------~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
= ++..+.++++.+... +| -+++..||-
T Consensus 71 CQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~---~P--k~~~~ENV~ 112 (331)
T 3ubt_Y 71 SQSWSEGGSLRGIDDPRGKLFYEYIRILKQK---KP--IFFLAENVK 112 (331)
T ss_dssp GGGTEETTEECCTTCGGGHHHHHHHHHHHHH---CC--SEEEEEECC
T ss_pred CCCcCCCCCccCCCCchhHHHHHHHHHHhcc---CC--eEEEeeeec
Confidence 0 113567778887775 45 588899995
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=93.07 E-value=0.6 Score=37.08 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=58.7
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh---hhhhcCCCccEEEEc
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK---LLMGDYRGADFVLID 119 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~---~L~~~~~~~D~VfiD 119 (220)
+||-+|+ +|+....+++.+...+-+|++++.+ ++..+ .+ .+++++.+|..+ .+......+|.||.-
T Consensus 2 ~ilItGa--tG~iG~~l~~~L~~~g~~V~~~~R~-~~~~~-------~~-~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ 70 (219)
T 3dqp_A 2 KIFIVGS--TGRVGKSLLKSLSTTDYQIYAGARK-VEQVP-------QY-NNVKAVHFDVDWTPEEMAKQLHGMDAIINV 70 (219)
T ss_dssp EEEEEST--TSHHHHHHHHHHTTSSCEEEEEESS-GGGSC-------CC-TTEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred eEEEECC--CCHHHHHHHHHHHHCCCEEEEEECC-ccchh-------hc-CCceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence 5888883 6788888888887767899999999 65322 12 579999999866 344556789999977
Q ss_pred CCCCCc-----c---HHHHHHHHHhh
Q 042616 120 CNIDID-----G---HKNVFRAAKES 137 (220)
Q Consensus 120 ~~k~~~-----~---y~~~l~~l~~~ 137 (220)
+..... + ...+++.+.+.
T Consensus 71 ag~~~~~~~~~n~~~~~~l~~a~~~~ 96 (219)
T 3dqp_A 71 SGSGGKSLLKVDLYGAVKLMQAAEKA 96 (219)
T ss_dssp CCCTTSSCCCCCCHHHHHHHHHHHHT
T ss_pred CcCCCCCcEeEeHHHHHHHHHHHHHh
Confidence 764111 1 35566776664
|
| >2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A | Back alignment and structure |
|---|
Probab=93.00 E-value=0.15 Score=43.04 Aligned_cols=93 Identities=20% Similarity=0.164 Sum_probs=50.5
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCCch-hHH-----HHHHHHh---c-ccCCcE-EEEEc-ch-------------
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSGVI-GDI-----DASKKSL---G-RYANCI-EFVKG-DA------------- 102 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d~~-~~~-----~~Ar~~l---~-g~~~~V-e~v~g-da------------- 102 (220)
|++|-+|+. ||.++...|.+|.-||.| + +.- ....... . .+..++ .++.+ +.
T Consensus 14 GGvGKTT~a~nLA~~La~~G~~VlliD~D-~~q~~l~~~l~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~~~~~~~~~~ 92 (286)
T 2xj4_A 14 GGAGKSTIAVHLVTALLYGGAKVAVIDLD-LRQRTSARFFENRRAWLDNKKIELPEPLALNLSDNDVALAERPEEEQVAG 92 (286)
T ss_dssp SCTTHHHHHHHHHHHHHHTTCCEEEEECC-TTTCHHHHHHHHHHHHHHHHTCCCCCCEEECSSSCHHHHTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCCCCHHHHhCCChhHhHhccccCCCchheEeeCCCCCCcChhhhhhHHH
Confidence 568888775 776666657799999999 7 311 1111111 1 123345 55543 21
Q ss_pred -hhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 103 -QKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 103 -~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+.+..+...||+|+||++. .... ....+... .+.-+|++.
T Consensus 93 l~~~l~~l~~~yD~viiD~p~--~~~~-~~~~~l~~----aD~viiv~~ 134 (286)
T 2xj4_A 93 FEAAFARAMAECDFILIDTPG--GDSA-ITRMAHGR----ADLVVTPMN 134 (286)
T ss_dssp HHHHHHHHHHHCSEEEEECCS--SCCH-HHHHHHHT----CSEEEEEEE
T ss_pred HHHHHHHHHhcCCEEEEcCCC--CccH-HHHHHHHH----CCEEEEEEc
Confidence 12233333579999999998 5433 33344443 334455554
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=92.95 E-value=0.02 Score=49.23 Aligned_cols=117 Identities=8% Similarity=-0.093 Sum_probs=69.4
Q ss_pred CCChhHHHHHHHHHh--hCCCCEEEEEcCCchHHHHHHHHHH--cCCCCcEEEEEe--CCchhHHHHHHHHh-cccCCcE
Q 042616 23 GKEPDVGEFISALAA--GNNAQLIVMACSSIAVSRTLALVAA--ARQTGGRVVCIL--SGVIGDIDASKKSL-GRYANCI 95 (220)
Q Consensus 23 ~~~p~~~~~L~~La~--~~~a~~ILEIGtg~~G~sTl~LA~A--~~~~~grV~tIE--~d~~~~~~~Ar~~l-~g~~~~V 95 (220)
...+....|+...-+ ..+..+|||+||+ .|.++...+.- .....|+++++| .. |-.. + .|. +-+
T Consensus 54 yRSRAayKL~EIdeK~likpg~~VVDLGaA-PGGWSQvAa~~~~vg~V~G~vig~D~~~~-P~~~------~~~Gv-~~i 124 (269)
T 2px2_A 54 PVSRGTAKLRWLVERRFVQPIGKVVDLGCG-RGGWSYYAATMKNVQEVRGYTKGGPGHEE-PMLM------QSYGW-NIV 124 (269)
T ss_dssp CSSTHHHHHHHHHHTTSCCCCEEEEEETCT-TSHHHHHHTTSTTEEEEEEECCCSTTSCC-CCCC------CSTTG-GGE
T ss_pred cccHHHHHHHHHHHcCCCCCCCEEEEcCCC-CCHHHHHHhhhcCCCCceeEEEccccccC-CCcc------cCCCc-eEE
Confidence 455555555543333 3557899999995 89888877763 211125666666 22 1100 0 121 235
Q ss_pred EEEEc-chhhhhhhcCCCccEEEEcCCCCCc-------cHHHHHHHHHhhcCCCCCCE-EEEEecCCCC
Q 042616 96 EFVKG-DAQKLLMGDYRGADFVLIDCNIDID-------GHKNVFRAAKESVMHGSGAG-VIVGYNALPK 155 (220)
Q Consensus 96 e~v~g-da~~~L~~~~~~~D~VfiD~~k~~~-------~y~~~l~~l~~~~~L~~~Gg-viv~dNv~~~ 155 (220)
+|..| |..+ ++ ..++|+|+.|.....+ .-...++.+... |+| || -+++. +|..
T Consensus 125 ~~~~G~Df~~-~~--~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~--Lk~-gG~~FvvK-VFqg 186 (269)
T 2px2_A 125 TMKSGVDVFY-KP--SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDW--LSR-GPKEFCIK-ILCP 186 (269)
T ss_dssp EEECSCCGGG-SC--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHH--HTT-CCSEEEEE-ESCT
T ss_pred EeeccCCccC-CC--CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHH--hhc-CCcEEEEE-ECCC
Confidence 77778 9887 22 3589999999865221 112357777777 876 66 77775 6664
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=92.94 E-value=0.17 Score=43.22 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=25.1
Q ss_pred CcEEEEEcchhhhhhhcC-CCccEEEEcCCC
Q 042616 93 NCIEFVKGDAQKLLMGDY-RGADFVLIDCNI 122 (220)
Q Consensus 93 ~~Ve~v~gda~~~L~~~~-~~~D~VfiD~~k 122 (220)
.++++++||+.+.++.+. ++||+||.|.+-
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY 50 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPY 50 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCC
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCC
Confidence 568999999999887653 689999999875
|
| >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.57 Score=38.61 Aligned_cols=40 Identities=23% Similarity=0.121 Sum_probs=28.0
Q ss_pred CCCEEEEEcC-CchHHHHHH--HHHHcCCCCcEEEEEeCCchhH
Q 042616 40 NAQLIVMACS-SIAVSRTLA--LVAAARQTGGRVVCILSGVIGD 80 (220)
Q Consensus 40 ~a~~ILEIGt-g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~ 80 (220)
+++.|.-.++ |++|-+|+. ||.++...+.+|.-||.| ++.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D-~~~ 47 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLD-PQG 47 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECC-TTC
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECC-CCc
Confidence 4555554443 669988875 676666557799999999 763
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=92.73 E-value=0.48 Score=39.59 Aligned_cols=78 Identities=14% Similarity=0.055 Sum_probs=49.5
Q ss_pred CCEEEEEcCCchHHHHHH-HHHHcCCCCcEEEEEeCCch-------------------hHHHHHHHHhccc--CCcEEEE
Q 042616 41 AQLIVMACSSIAVSRTLA-LVAAARQTGGRVVCILSGVI-------------------GDIDASKKSLGRY--ANCIEFV 98 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~-LA~A~~~~~grV~tIE~d~~-------------------~~~~~Ar~~l~g~--~~~Ve~v 98 (220)
.++|+-+|+|+.|...+. |+.+ . -|+++-+|.| . .+++.+++.+..+ .-+|+.+
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~-G--v~~i~lvD~d-~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~ 106 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASA-G--VGNLTLLDFD-TVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV 106 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHH-T--CSEEEEECCC-BCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCeEEEEeeCHHHHHHHHHHHHc-C--CCeEEEEcCC-CcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence 367999999888877664 4443 2 3799999999 7 6777777777522 2245655
Q ss_pred Ecchhh-hhhhcCCCccEEEEcCCC
Q 042616 99 KGDAQK-LLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 99 ~gda~~-~L~~~~~~~D~VfiD~~k 122 (220)
..+..+ -+..+...+|+|+.-.+.
T Consensus 107 ~~~~~~~~~~~~~~~~DvVi~~~d~ 131 (249)
T 1jw9_B 107 NALLDDAELAALIAEHDLVLDCTDN 131 (249)
T ss_dssp CSCCCHHHHHHHHHTSSEEEECCSS
T ss_pred eccCCHhHHHHHHhCCCEEEEeCCC
Confidence 544321 122223579998855443
|
| >1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.33 Score=39.08 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=23.8
Q ss_pred EEEEcC-CchHHHHHH--HHHHcCCCCcEEEEEeCCchh
Q 042616 44 IVMACS-SIAVSRTLA--LVAAARQTGGRVVCILSGVIG 79 (220)
Q Consensus 44 ILEIGt-g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~ 79 (220)
|.-.++ |++|-+|+. ||.++...+.+|.-||.| +.
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D-~~ 42 (237)
T 1g3q_A 5 ISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD-LT 42 (237)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC-TT
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC-CC
Confidence 333333 457877765 676666557799999999 74
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=92.38 E-value=1.1 Score=38.80 Aligned_cols=99 Identities=14% Similarity=0.120 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHH-HHHHhcc--cCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDA-SKKSLGR--YANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~-Ar~~l~g--~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
++.+|.-||+|.+|++.+.+.. .....+.|+.+|.+ +++++- +...-+. +...+++..++ .+.+ ...|+|
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~-~~~~~~ev~L~Di~-~~~~~g~~~dl~~~~~~~~~~~i~~~~-~~a~----~~aDvV 78 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMA-LRQTANELVLIDVF-KEKAIGEAMDINHGLPFMGQMSLYAGD-YSDV----KDCDVI 78 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHH-HTTCSSEEEEECCC----CCHHHHHHTTSCCCTTCEEEC--C-GGGG----TTCSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCC-hHHHHHHHHHHHHhHHhcCCeEEEECC-HHHh----CCCCEE
Confidence 4567988999888887665443 33335699999999 766553 3332222 22456666544 2222 468999
Q ss_pred EEcCCCCC--cc------------HHHHHHHHHhhcCCCCCCEEEEE
Q 042616 117 LIDCNIDI--DG------------HKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fiD~~k~~--~~------------y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
++-+.... +. ..++.+.+.+. .| +++|+.
T Consensus 79 ii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~---~p-~a~viv 121 (318)
T 1y6j_A 79 VVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY---YN-HGVILV 121 (318)
T ss_dssp EECCCC------CHHHHHHHHHHHHHHHHHHHHHH---CC-SCEEEE
T ss_pred EEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh---CC-CcEEEE
Confidence 99876511 11 34556666665 25 565555
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=92.29 E-value=2 Score=36.40 Aligned_cols=76 Identities=13% Similarity=0.080 Sum_probs=42.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHH-HHHHhcc--cCCcEEEEEc-chhhhhhhcCCCccE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDA-SKKSLGR--YANCIEFVKG-DAQKLLMGDYRGADF 115 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~-Ar~~l~g--~~~~Ve~v~g-da~~~L~~~~~~~D~ 115 (220)
++.+|.-||+|..|..-......... .+.|+.+|.+ ++.++. +...-++ +...+.+... +. +.+ ...|+
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~-~~~V~l~d~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~----~~aD~ 78 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIA-KERVEAEVLDMQHGSSFYPTVSIDGSDDP-EIC----RDADM 78 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSS-HHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGG----TTCSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCC-hhHHHHHHHHHHhhhhhcCCeEEEeCCCH-HHh----CCCCE
Confidence 34689999998777754432222111 2389999999 766652 2221112 2123444433 32 222 46899
Q ss_pred EEEcCCC
Q 042616 116 VLIDCNI 122 (220)
Q Consensus 116 VfiD~~k 122 (220)
||+-...
T Consensus 79 Vii~v~~ 85 (319)
T 1lld_A 79 VVITAGP 85 (319)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998754
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.23 E-value=1.1 Score=35.89 Aligned_cols=93 Identities=15% Similarity=0.073 Sum_probs=58.0
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh--hhhhc-CCCccEEEEc
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK--LLMGD-YRGADFVLID 119 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~--~L~~~-~~~~D~VfiD 119 (220)
+|+-+|+ |..+..++..+...+-.|+.+|.| ++.++...+.. .++++.||+.+ .|... ....|.|++-
T Consensus 2 ~iiIiG~---G~~G~~la~~L~~~g~~v~vid~~-~~~~~~l~~~~-----~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 72 (218)
T 3l4b_C 2 KVIIIGG---ETTAYYLARSMLSRKYGVVIINKD-RELCEEFAKKL-----KATIIHGDGSHKEILRDAEVSKNDVVVIL 72 (218)
T ss_dssp CEEEECC---HHHHHHHHHHHHHTTCCEEEEESC-HHHHHHHHHHS-----SSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred EEEEECC---CHHHHHHHHHHHhCCCeEEEEECC-HHHHHHHHHHc-----CCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence 4777774 556666666665557789999999 88876644432 36789998854 34332 4678999987
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.+. .......-.+.+. +.+ ...+++
T Consensus 73 ~~~--d~~n~~~~~~a~~--~~~-~~~iia 97 (218)
T 3l4b_C 73 TPR--DEVNLFIAQLVMK--DFG-VKRVVS 97 (218)
T ss_dssp CSC--HHHHHHHHHHHHH--TSC-CCEEEE
T ss_pred cCC--cHHHHHHHHHHHH--HcC-CCeEEE
Confidence 766 4333333444443 334 344444
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=92.23 E-value=0.15 Score=44.64 Aligned_cols=185 Identities=12% Similarity=0.058 Sum_probs=95.2
Q ss_pred CCCChhHHHHHHHHHh--hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccC-CcEEEE
Q 042616 22 RGKEPDVGEFISALAA--GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYA-NCIEFV 98 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~--~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~-~~Ve~v 98 (220)
...+.....|+.+.-+ ..+...|||+||+ .|-++-..+.... ..+|+++|.- ....+. ...++.+. .-|.++
T Consensus 74 ~y~SR~~~KL~ei~~~~~l~~~~~VlDLGaa-pGGwsq~~~~~~g--v~~V~avdvG-~~~he~-P~~~~ql~w~lV~~~ 148 (321)
T 3lkz_A 74 HPVSRGTAKLRWLVERRFLEPVGKVIDLGCG-RGGWCYYMATQKR--VQEVRGYTKG-GPGHEE-PQLVQSYGWNIVTMK 148 (321)
T ss_dssp CCSSTHHHHHHHHHHTTSCCCCEEEEEETCT-TCHHHHHHTTCTT--EEEEEEECCC-STTSCC-CCCCCBTTGGGEEEE
T ss_pred CccchHHHHHHHHHHhcCCCCCCEEEEeCCC-CCcHHHHHHhhcC--CCEEEEEEcC-CCCccC-cchhhhcCCcceEEE
Confidence 4677777777666554 2446789999995 8888876554321 3579999998 442210 00111111 238888
Q ss_pred Ec-chhhhhhhcCCCccEEEEcCCCCCc-------cHHHHHHHHHhhcCCCCCCEEEEEecCCCC--CCcc--------c
Q 042616 99 KG-DAQKLLMGDYRGADFVLIDCNIDID-------GHKNVFRAAKESVMHGSGAGVIVGYNALPK--GSWR--------G 160 (220)
Q Consensus 99 ~g-da~~~L~~~~~~~D~VfiD~~k~~~-------~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~--g~~~--------~ 160 (220)
.+ |...+-| .++|+|+.|-..... ...++|+.+.+- |.+..+-+++. ||.+ ..+. .
T Consensus 149 ~~~Dv~~l~~---~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~w--L~~~~~~f~~K-Vl~pY~~~v~e~l~~lq~~ 222 (321)
T 3lkz_A 149 SGVDVFYRPS---ECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDW--LHRGPREFCVK-VLCPYMPKVIEKMELLQRR 222 (321)
T ss_dssp CSCCTTSSCC---CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHH--HTTCCCEEEEE-ESCTTSHHHHHHHHHHHHH
T ss_pred eccCHhhCCC---CCCCEEEEECccCCCChhhhhhHHHHHHHHHHHH--hccCCCcEEEE-EcCCCChHHHHHHHHHHHH
Confidence 88 7655332 679999999876322 224466666776 65531555664 6654 3211 1
Q ss_pred e--EEEeeecCCc--EEEEEEee-cCC----CC-------CCC-----cCcCceEecccCCCceeEEEeecCCCCCcc
Q 042616 161 Y--KTHFLPIGEG--LLVTRIGE-NSD----VG-------GGR-----KRSRWVVTVDKCTGEEHVFRVTSSSSPRKV 217 (220)
Q Consensus 161 ~--~s~~lPig~G--l~v~~~~~-~~~----~~-------~~~-----~~~~w~~~~d~~~~~~~~~~~~~~~~~~~~ 217 (220)
| --+..|...- -++=...- +|+ .+ +|. ++.++..-||--||--+|=+..-|....+|
T Consensus 223 fgg~lvr~P~SRnst~EmY~vsGa~gNIV~aVn~tSr~Ll~Rm~~~~~~~p~~e~DV~LgsGTRsV~~~~~~~d~~~I 300 (321)
T 3lkz_A 223 YGGGLVRNPLSRNSTHEMYWVSRASGNVVHSVNMTSQVLLGRMEKRTWKGPQYEEDVNLGSGTRAVGKPLLNSDTSKI 300 (321)
T ss_dssp HCCEEECCTTSCTTCCCEEEETTCCSCHHHHHHHHHHHHHHTTSCSSCCCCEEECCCCCCBCCCC-------------
T ss_pred hCCEeEeCCCCCCCcceEEEEecCCCCeeeeHHHHHHHHHHHhhccCCCCCeeCCCCcCCCCCCcccccCCCCCHHHH
Confidence 1 2233443221 11111110 111 00 122 346777899999999999888766555554
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=92.20 E-value=0.69 Score=42.76 Aligned_cols=100 Identities=11% Similarity=0.003 Sum_probs=68.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh-------------
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM------------- 107 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~------------- 107 (220)
-+++|+-|| +|-.++.|-.| |.+ |.++|.| +.+.+.-+.|+... ....++++|..++.+
T Consensus 89 ~~viDLFaG-~GGlslG~~~a----G~~~v~avE~d-~~A~~ty~~N~~~~-p~~~~~~~DI~~i~~~~~~~~~~~~~~~ 161 (482)
T 3me5_A 89 FRFIDLFAG-IGGIRRGFESI----GGQCVFTSEWN-KHAVRTYKANHYCD-PATHHFNEDIRDITLSHQEGVSDEAAAE 161 (482)
T ss_dssp EEEEEESCT-TSHHHHHHHTT----TEEEEEEECCC-HHHHHHHHHHSCCC-TTTCEEESCTHHHHCTTCTTSCHHHHHH
T ss_pred ceEEEecCC-ccHHHHHHHHC----CCEEEEEEeCC-HHHHHHHHHhcccC-CCcceeccchhhhhhccccccchhhHHh
Confidence 579999986 88888887764 444 7899999 88888888887421 124567788877652
Q ss_pred ---hcCCCccEEEEcCCC------------------------CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 108 ---GDYRGADFVLIDCNI------------------------DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 108 ---~~~~~~D~VfiD~~k------------------------~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.....+|+++-..+= +...+.++++.+... +| -++|..||-
T Consensus 162 ~i~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~---rP--k~fvlENV~ 229 (482)
T 3me5_A 162 HIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDAR---RP--AMFVLENVK 229 (482)
T ss_dssp HHHHHSCCCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHH---CC--SEEEEEEET
T ss_pred hhhhcCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHc---CC--cEEEEeCcH
Confidence 113568998754331 112467778888775 44 588888885
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=92.18 E-value=0.36 Score=38.85 Aligned_cols=65 Identities=15% Similarity=-0.018 Sum_probs=40.4
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCC-cEEEEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDASKKSLGRYAN-CIEFVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~-~Ve~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
|++|-+|+. ||.++...+ +|.-||.| ++.-. ...+.. .+ ..+++.++. +..+...||+|++|++.
T Consensus 10 GGvGKTT~a~~LA~~la~~g-~VlliD~D-~q~~~--~~~~~~-~~l~~~vi~~~~---l~~l~~~yD~viiD~p~ 77 (209)
T 3cwq_A 10 GGVGKTTTAVHLSAYLALQG-ETLLIDGD-PNRSA--TGWGKR-GSLPFKVVDERQ---AAKYAPKYQNIVIDTQA 77 (209)
T ss_dssp TTSSHHHHHHHHHHHHHTTS-CEEEEEEC-TTCHH--HHHHHH-SCCSSEEEEGGG---HHHHGGGCSEEEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHhcC-CEEEEECC-CCCCH--HHHhcC-CCCCcceeCHHH---HHHhhhcCCEEEEeCCC
Confidence 557877765 777777657 99999999 76421 122211 11 114455443 33334679999999987
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=92.02 E-value=0.16 Score=46.32 Aligned_cols=107 Identities=15% Similarity=0.096 Sum_probs=58.9
Q ss_pred CCEEEEEcCCchHHHHHH--HHHHcCCC-CcEEEEEeCCchhHHHHHHH---HhcccCCcEEEEEc----chhhh----h
Q 042616 41 AQLIVMACSSIAVSRTLA--LVAAARQT-GGRVVCILSGVIGDIDASKK---SLGRYANCIEFVKG----DAQKL----L 106 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~--LA~A~~~~-~grV~tIE~d~~~~~~~Ar~---~l~g~~~~Ve~v~g----da~~~----L 106 (220)
++.|+-+|.+++|-+|+. ||.++... +-+|.-||.| +.+.....+ .... .++.++.. |+.++ +
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D-~~r~~a~~ql~~~~~~--~~l~v~~~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD-VYRPAAIKQLETLAEQ--VGVDFFPSDVGQKPVDIVNAAL 176 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC-CSSTTHHHHHHHHHHH--HTCEECCCCSSSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC-CCCccHHHHHHhhccc--CCeeEEeCCCCCCHHHHHHHHH
Confidence 456777788779988876 66666654 6788888888 744322211 1111 12333332 33333 3
Q ss_pred hhcC-CCccEEEEcCCCCCcc---HHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 107 MGDY-RGADFVLIDCNIDIDG---HKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 107 ~~~~-~~~D~VfiD~~k~~~~---y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
..+. ..||+|+||++..... ....+..+... +.|...++|+|-.
T Consensus 177 ~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~--~~p~~vllVvda~ 224 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHAS--INPVETLFVVDAM 224 (433)
T ss_dssp HHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHH--SCCSEEEEEEETT
T ss_pred HHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHh--hcCcceeEEeecc
Confidence 2222 5799999999752121 12223334444 4565566666643
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=92.00 E-value=0.88 Score=41.77 Aligned_cols=107 Identities=17% Similarity=0.115 Sum_probs=64.7
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-----cc---------CCcEEEEEcchh
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-----RY---------ANCIEFVKGDAQ 103 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-----g~---------~~~Ve~v~gda~ 103 (220)
.+...+|.-||+|..|.. +|..+...|-+|+++|.+ ++.++..++... ++ ..++.+ ..|..
T Consensus 5 ~~~~~~I~VIG~G~vG~~---lA~~la~~G~~V~~~d~~-~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~ 79 (478)
T 2y0c_A 5 HHGSMNLTIIGSGSVGLV---TGACLADIGHDVFCLDVD-QAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIE 79 (478)
T ss_dssp --CCCEEEEECCSHHHHH---HHHHHHHTTCEEEEECSC-HHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHH
T ss_pred cCCCceEEEECcCHHHHH---HHHHHHhCCCEEEEEECC-HHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHH
Confidence 345678999997655543 333333335689999999 888887766421 11 123433 33444
Q ss_pred hhhhhcCCCccEEEEcCCCCC--------ccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 104 KLLMGDYRGADFVLIDCNIDI--------DGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k~~--------~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
+.+ ...|+||+--+.+. ......++.+.+. +++ |.+||.-.....|
T Consensus 80 ~a~----~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~--l~~-~~iVV~~STv~~g 133 (478)
T 2y0c_A 80 AAV----AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRY--MTG-FKVIVDKSTVPVG 133 (478)
T ss_dssp HHH----HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHH--CCS-CEEEEECSCCCTT
T ss_pred HHh----hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHh--cCC-CCEEEEeCCcCCC
Confidence 444 24799998765410 2336677778887 754 8888776655555
|
| >3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A | Back alignment and structure |
|---|
Probab=91.94 E-value=0.43 Score=42.19 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=25.3
Q ss_pred CEEEEEcC--CchHHHHHH--HHHHcC------CCCcEEEEEeCCchhH
Q 042616 42 QLIVMACS--SIAVSRTLA--LVAAAR------QTGGRVVCILSGVIGD 80 (220)
Q Consensus 42 ~~ILEIGt--g~~G~sTl~--LA~A~~------~~~grV~tIE~d~~~~ 80 (220)
.+++-+.+ ||+|-+|+. ||.++. ..+.+|.-||.| ++.
T Consensus 108 ~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D-~q~ 155 (398)
T 3ez2_A 108 AYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLD-PQS 155 (398)
T ss_dssp CEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEEC-TTC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCC-CCC
Confidence 34444432 678988875 666554 237899999999 754
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=91.87 E-value=0.41 Score=43.17 Aligned_cols=85 Identities=15% Similarity=0.113 Sum_probs=56.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh--hhhhc-CCCccEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK--LLMGD-YRGADFVL 117 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~--~L~~~-~~~~D~Vf 117 (220)
..+|+-+|.|-.|. .++..+...+-.|+.||.| ++.++.+++. .+.++.||+.+ +|... ....|.|+
T Consensus 4 ~~~viIiG~Gr~G~---~va~~L~~~g~~vvvId~d-~~~v~~~~~~------g~~vi~GDat~~~~L~~agi~~A~~vi 73 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQ---ITGRLLLSSGVKMVVLDHD-PDHIETLRKF------GMKVFYGDATRMDLLESAGAAKAEVLI 73 (413)
T ss_dssp CCSEEEECCSHHHH---HHHHHHHHTTCCEEEEECC-HHHHHHHHHT------TCCCEESCTTCHHHHHHTTTTTCSEEE
T ss_pred CCeEEEECCCHHHH---HHHHHHHHCCCCEEEEECC-HHHHHHHHhC------CCeEEEcCCCCHHHHHhcCCCccCEEE
Confidence 35688888654444 4455554446789999999 9998887752 35688999854 55443 36799999
Q ss_pred EcCCCCCccH-HHHHHHHHhh
Q 042616 118 IDCNIDIDGH-KNVFRAAKES 137 (220)
Q Consensus 118 iD~~k~~~~y-~~~l~~l~~~ 137 (220)
+-.+. ... ......++..
T Consensus 74 v~~~~--~~~n~~i~~~ar~~ 92 (413)
T 3l9w_A 74 NAIDD--PQTNLQLTEMVKEH 92 (413)
T ss_dssp ECCSS--HHHHHHHHHHHHHH
T ss_pred ECCCC--hHHHHHHHHHHHHh
Confidence 87765 332 3445555554
|
| >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.14 Score=44.03 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=28.3
Q ss_pred CCCCEEEEEcC-CchHHHHHH--HHHHcCCCCcEEEEEeCCchh
Q 042616 39 NNAQLIVMACS-SIAVSRTLA--LVAAARQTGGRVVCILSGVIG 79 (220)
Q Consensus 39 ~~a~~ILEIGt-g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~ 79 (220)
.+++.|+-.++ |+.|-||+. ||.++...+.+|.-||.| +.
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D-~r 144 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD-LR 144 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECC-TT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECC-CC
Confidence 34566666665 457877764 777776657899999999 64
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=91.59 E-value=0.62 Score=39.18 Aligned_cols=80 Identities=15% Similarity=0.101 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEE-Ecchhhh--hhhcCCCccE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFV-KGDAQKL--LMGDYRGADF 115 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v-~gda~~~--L~~~~~~~D~ 115 (220)
+.++||-.|+ +|+.+.+|+..+...+-+|++++.+ +...+.....+. ....+++++ .+|..+. +......+|.
T Consensus 10 ~~~~vlVTGa--tG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~ 86 (342)
T 1y1p_A 10 EGSLVLVTGA--NGFVASHVVEQLLEHGYKVRGTARS-ASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG 86 (342)
T ss_dssp TTCEEEEETT--TSHHHHHHHHHHHHTTCEEEEEESS-HHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred CCCEEEEECC--ccHHHHHHHHHHHHCCCEEEEEeCC-cccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCE
Confidence 4578999884 6777777777666557799999999 776655444443 122568888 7887542 3333457899
Q ss_pred EEEcCCC
Q 042616 116 VLIDCNI 122 (220)
Q Consensus 116 VfiD~~k 122 (220)
||--+..
T Consensus 87 vih~A~~ 93 (342)
T 1y1p_A 87 VAHIASV 93 (342)
T ss_dssp EEECCCC
T ss_pred EEEeCCC
Confidence 9977654
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=91.48 E-value=3.8 Score=35.76 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=61.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
+..+|.-||+|.+|++.+..... ....+.|+-+|.+ ++.++--..-+. .+...+.+..++..+ + ...|+|
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~~-~~~~~el~l~D~~-~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a-~----~~aDiV 80 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMVL-QGIAQEIGIVDIF-KDKTKGDAIDLEDALPFTSPKKIYSAEYSD-A----KDADLV 80 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH-HTCCSEEEEECSC-HHHHHHHHHHHHTTGGGSCCCEEEECCGGG-G----TTCSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-CCCCCeEEEEeCC-hHHHHHHHhhHhhhhhhcCCcEEEECcHHH-h----cCCCEE
Confidence 45789999998888866554433 2335699999999 776653333332 222356666666443 2 457999
Q ss_pred EEcCCCCC--------------ccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 117 LIDCNIDI--------------DGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 117 fiD~~k~~--------------~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
++-+...+ .-+.++.+.+.+. .|++=++++-|-
T Consensus 81 vi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~---~p~a~ilvvtNP 127 (326)
T 3vku_A 81 VITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS---GFNGIFLVAANP 127 (326)
T ss_dssp EECCCCC----------------CHHHHHHHHHTT---TCCSEEEECSSS
T ss_pred EECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhc---CCceEEEEccCc
Confidence 98765411 2245666667766 365555555543
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=91.47 E-value=0.51 Score=40.79 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=56.2
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCC-Cc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh--hhhhcCCCc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQT-GG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK--LLMGDYRGA 113 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~-~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~--~L~~~~~~~ 113 (220)
..+.++||-.|+ +|+.+.+|+..+... +. +|++++.+ +...+..++.+.. .+++++.+|..+ .+......+
T Consensus 18 ~~~~k~vlVTGa--tG~iG~~l~~~L~~~~g~~~V~~~~r~-~~~~~~~~~~~~~--~~v~~~~~Dl~d~~~l~~~~~~~ 92 (344)
T 2gn4_A 18 MLDNQTILITGG--TGSFGKCFVRKVLDTTNAKKIIVYSRD-ELKQSEMAMEFND--PRMRFFIGDVRDLERLNYALEGV 92 (344)
T ss_dssp TTTTCEEEEETT--TSHHHHHHHHHHHHHCCCSEEEEEESC-HHHHHHHHHHHCC--TTEEEEECCTTCHHHHHHHTTTC
T ss_pred hhCCCEEEEECC--CcHHHHHHHHHHHhhCCCCEEEEEECC-hhhHHHHHHHhcC--CCEEEEECCCCCHHHHHHHHhcC
Confidence 345688999883 677777777766554 54 89999999 7766555544432 479999999754 233445679
Q ss_pred cEEEEcCCC
Q 042616 114 DFVLIDCNI 122 (220)
Q Consensus 114 D~VfiD~~k 122 (220)
|.||--+..
T Consensus 93 D~Vih~Aa~ 101 (344)
T 2gn4_A 93 DICIHAAAL 101 (344)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999988765
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=91.46 E-value=0.14 Score=44.21 Aligned_cols=106 Identities=10% Similarity=-0.000 Sum_probs=57.0
Q ss_pred CCEEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHHHHH---HhcccCCcEEEEEc----chhhh----hh
Q 042616 41 AQLIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDASKK---SLGRYANCIEFVKG----DAQKL----LM 107 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~Ar~---~l~g~~~~Ve~v~g----da~~~----L~ 107 (220)
+..|+-+|.+++|-||+. ||..+.+.+++|.-++.| ..+.....+ ..+. .++.++.+ ++.++ +.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D-~~r~~a~~ql~~~~~~--~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD-VYRPAALEQLQQLGQQ--IGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC-CSSSHHHHHHHHHHHH--HTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC-CCCHHHHHHHHHHhcc--CCeEEEecCCCCCHHHHHHHHHH
Confidence 345666787668988865 665555557899888888 654322211 1111 12334333 33332 32
Q ss_pred hcC-CCccEEEEcCCCCCc--cHHHHHH---HHHhhcCCCCCCEEEEEec
Q 042616 108 GDY-RGADFVLIDCNIDID--GHKNVFR---AAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 108 ~~~-~~~D~VfiD~~k~~~--~y~~~l~---~l~~~~~L~~~Ggviv~dN 151 (220)
.+. ..||+|++|++.... .-...++ .+... +.+...++|.|-
T Consensus 175 ~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~--~~~d~vllVvda 222 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEA--IKPDEVTLVIDA 222 (297)
T ss_dssp HHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHH--HCCSEEEEEEEG
T ss_pred HHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHH--hcCCEEEEEeeC
Confidence 322 689999999986222 1112332 23333 345556666653
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=91.45 E-value=4.1 Score=35.04 Aligned_cols=73 Identities=19% Similarity=0.111 Sum_probs=47.2
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHH-HHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDA-SKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~-Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+|.-||+|.+|++.+.+... ....+.|+-+|.+ +++++. +..... .+...+++..++ .+.+ ...|+|++-
T Consensus 2 KI~IiGaG~vG~~~a~~l~~-~~~~~el~L~Di~-~~k~~g~a~dl~~~~~~~~~~~v~~~~-~~a~----~~aD~Vii~ 74 (310)
T 2xxj_A 2 KVGIVGSGMVGSATAYALAL-LGVAREVVLVDLD-RKLAQAHAEDILHATPFAHPVWVWAGS-YGDL----EGARAVVLA 74 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHH-TTCCSEEEEECSS-HHHHHHHHHHHHTTGGGSCCCEEEECC-GGGG----TTEEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCCCEEEEEeCC-hhHHHHHHHHHHHhHhhcCCeEEEECC-HHHh----CCCCEEEEC
Confidence 57789998888876654433 3335799999999 777764 443333 222456666555 3323 568999997
Q ss_pred CCC
Q 042616 120 CNI 122 (220)
Q Consensus 120 ~~k 122 (220)
+..
T Consensus 75 ag~ 77 (310)
T 2xxj_A 75 AGV 77 (310)
T ss_dssp CCC
T ss_pred CCC
Confidence 755
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=91.37 E-value=0.44 Score=42.28 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=36.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHH
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKK 86 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~ 86 (220)
++++|+-+|+|.+|..++.++.++ |.+|+.+|++ +...+.++.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~---Ga~V~~~d~~-~~~~~~~~~ 213 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRL---GAVVMATDVR-AATKEQVES 213 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT---TCEEEEECSC-STTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHH
Confidence 578999999998999888888875 5689999999 888887766
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=91.22 E-value=3.7 Score=35.02 Aligned_cols=99 Identities=11% Similarity=0.122 Sum_probs=54.0
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-c--cCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-R--YANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g--~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+|.-||+|..|++..... +.....+.|+.+|.+ +++++.....+. . +...+++..++. +.+ ...|+|++-
T Consensus 2 kI~VIGaG~vG~~la~~l-a~~g~~~eV~L~D~~-~~~~~~~~~~l~~~~~~~~~~~i~~~~~-~a~----~~aDvVIi~ 74 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFAL-VLRGSCSELVLVDRD-EDRAQAEAEDIAHAAPVSHGTRVWHGGH-SEL----ADAQVVILT 74 (304)
T ss_dssp EEEEECCSHHHHHHHHHH-HHTTCCSEEEEECSS-HHHHHHHHHHHTTSCCTTSCCEEEEECG-GGG----TTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHH-HhCCCCCEEEEEeCC-HHHHHHHHHhhhhhhhhcCCeEEEECCH-HHh----CCCCEEEEc
Confidence 678899987777655433 322224589999999 776653222222 2 112344444443 222 467999998
Q ss_pred CCCCCc--------------cHHHHHHHHHhhcCCCCCCEEE-EEecC
Q 042616 120 CNIDID--------------GHKNVFRAAKESVMHGSGAGVI-VGYNA 152 (220)
Q Consensus 120 ~~k~~~--------------~y~~~l~~l~~~~~L~~~Ggvi-v~dNv 152 (220)
...... -..++++.+.+. .| ++++ ++-|.
T Consensus 75 ~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~---~p-~~~vi~~tNP 118 (304)
T 2v6b_A 75 AGANQKPGESRLDLLEKNADIFRELVPQITRA---AP-DAVLLVTSNP 118 (304)
T ss_dssp C------------CHHHHHHHHHHHHHHHHHH---CS-SSEEEECSSS
T ss_pred CCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh---CC-CeEEEEecCc
Confidence 754101 125666777776 25 5554 44443
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=91.21 E-value=0.26 Score=43.39 Aligned_cols=91 Identities=11% Similarity=0.013 Sum_probs=56.8
Q ss_pred CCCCEEEEE--cCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 39 NNAQLIVMA--CSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 39 ~~a~~ILEI--Gtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
.+.++||-+ |+|++|..++.+|++. +.+|++++.+ +++.+.+++. |...-+.....|..+.+..+ ...+|
T Consensus 169 ~~g~~vlV~gag~G~vG~~a~q~a~~~---Ga~Vi~~~~~-~~~~~~~~~l--Ga~~~~~~~~~~~~~~v~~~t~~~g~d 242 (379)
T 3iup_A 169 LEGHSALVHTAAASNLGQMLNQICLKD---GIKLVNIVRK-QEQADLLKAQ--GAVHVCNAASPTFMQDLTEALVSTGAT 242 (379)
T ss_dssp HTTCSCEEESSTTSHHHHHHHHHHHHH---TCCEEEEESS-HHHHHHHHHT--TCSCEEETTSTTHHHHHHHHHHHHCCC
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHHHC---CCEEEEEECC-HHHHHHHHhC--CCcEEEeCCChHHHHHHHHHhcCCCce
Confidence 567889988 7788999999999876 5699999999 9999888863 22111222223333333222 13699
Q ss_pred EEEEcCCCCCccHHHHHHHHHh
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKE 136 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~ 136 (220)
++| |+--........++.+..
T Consensus 243 ~v~-d~~g~~~~~~~~~~~l~~ 263 (379)
T 3iup_A 243 IAF-DATGGGKLGGQILTCMEA 263 (379)
T ss_dssp EEE-ESCEEESHHHHHHHHHHH
T ss_pred EEE-ECCCchhhHHHHHHhcch
Confidence 887 443301123555566543
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=91.17 E-value=1.1 Score=41.61 Aligned_cols=89 Identities=7% Similarity=-0.017 Sum_probs=58.4
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
....++|+-+|+|.+|...+.++++. |.+|+.+|++ +...+.|++. |. ++ .+..+.+ ...|+|+
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~---Ga~Viv~d~~-~~~~~~A~~~--Ga----~~--~~l~e~l----~~aDvVi 334 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQ---GARVSVTEID-PINALQAMME--GF----DV--VTVEEAI----GDADIVV 334 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT---TCEEEEECSC-HHHHHHHHHT--TC----EE--CCHHHHG----GGCSEEE
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHHc--CC----EE--ecHHHHH----hCCCEEE
Confidence 35678999999988888887777764 6799999999 8887776542 32 22 2444544 3589998
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.-... ..... ....+. +++ ||+|+.
T Consensus 335 ~atgt--~~~i~--~~~l~~--mk~-ggilvn 359 (494)
T 3ce6_A 335 TATGN--KDIIM--LEHIKA--MKD-HAILGN 359 (494)
T ss_dssp ECSSS--SCSBC--HHHHHH--SCT-TCEEEE
T ss_pred ECCCC--HHHHH--HHHHHh--cCC-CcEEEE
Confidence 76554 33211 234444 544 887764
|
| >3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A | Back alignment and structure |
|---|
Probab=91.14 E-value=0.31 Score=43.22 Aligned_cols=41 Identities=15% Similarity=0.061 Sum_probs=20.6
Q ss_pred CCCCEEEEEcC-CchHHHHHH--HHHHcC------CCCcEEEEEeCCchhH
Q 042616 39 NNAQLIVMACS-SIAVSRTLA--LVAAAR------QTGGRVVCILSGVIGD 80 (220)
Q Consensus 39 ~~a~~ILEIGt-g~~G~sTl~--LA~A~~------~~~grV~tIE~d~~~~ 80 (220)
.+++.|.-++. ||+|-+|+. ||.++. ..+.+|.-||.| ++.
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D-~~~ 158 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLD-PQA 158 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEES-SSS
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCC-CCC
Confidence 34454544432 678988875 666554 237799999998 653
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=91.13 E-value=0.65 Score=37.60 Aligned_cols=80 Identities=8% Similarity=0.028 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hhhc-------C
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LMGD-------Y 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~-------~ 110 (220)
+.++||-.|. +|.....+++.+.+.+.+|+.++.+ ++..+...+.++....++.++.+|..+. +... .
T Consensus 10 ~~~~vlVtGa--sggiG~~la~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 86 (255)
T 1fmc_A 10 DGKCAIITGA--GAGIGKEIAITFATAGASVVVSDIN-ADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TTCEEEETTT--TSHHHHHHHHHHHTTTCEEEEEESC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC--ccHHHHHHHHHHHHCCCEEEEEcCC-HHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 4578888773 5666777777776668899999999 7776655555543335688888886431 2111 2
Q ss_pred CCccEEEEcCCC
Q 042616 111 RGADFVLIDCNI 122 (220)
Q Consensus 111 ~~~D~VfiD~~k 122 (220)
+++|.|+.-+..
T Consensus 87 ~~~d~vi~~Ag~ 98 (255)
T 1fmc_A 87 GKVDILVNNAGG 98 (255)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 479999976653
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.12 E-value=1.3 Score=39.09 Aligned_cols=95 Identities=15% Similarity=0.060 Sum_probs=61.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc------c--cCCcEEEEEcchhhhhhhcCCC
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG------R--YANCIEFVKGDAQKLLMGDYRG 112 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~------g--~~~~Ve~v~gda~~~L~~~~~~ 112 (220)
..+|.-||+|..|. .||..+...+-.|+.++.+ ++.++..++.-. + +..++.+ ..|..+.+ ..
T Consensus 29 ~mkI~VIGaG~mG~---alA~~La~~G~~V~l~~r~-~~~~~~i~~~~~~~~~l~g~~l~~~i~~-t~d~~ea~----~~ 99 (356)
T 3k96_A 29 KHPIAILGAGSWGT---ALALVLARKGQKVRLWSYE-SDHVDEMQAEGVNNRYLPNYPFPETLKA-YCDLKASL----EG 99 (356)
T ss_dssp CSCEEEECCSHHHH---HHHHHHHTTTCCEEEECSC-HHHHHHHHHHSSBTTTBTTCCCCTTEEE-ESCHHHHH----TT
T ss_pred CCeEEEECccHHHH---HHHHHHHHCCCeEEEEeCC-HHHHHHHHHcCCCcccCCCCccCCCeEE-ECCHHHHH----hc
Confidence 45788899764443 4444444435579999999 888777665421 1 1223443 34555554 35
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.|+||+--+. ....++++.+.+. +.+ +.+||.
T Consensus 100 aDvVilaVp~--~~~~~vl~~i~~~--l~~-~~ivvs 131 (356)
T 3k96_A 100 VTDILIVVPS--FAFHEVITRMKPL--IDA-KTRIAW 131 (356)
T ss_dssp CCEEEECCCH--HHHHHHHHHHGGG--CCT-TCEEEE
T ss_pred CCEEEECCCH--HHHHHHHHHHHHh--cCC-CCEEEE
Confidence 7999998876 6668888999888 754 666543
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=90.96 E-value=1.5 Score=35.54 Aligned_cols=92 Identities=18% Similarity=0.172 Sum_probs=58.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh--hhhhhc-CCCccEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ--KLLMGD-YRGADFVL 117 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~--~~L~~~-~~~~D~Vf 117 (220)
.++|+-+|+ |..+..++..+...+- |+.||.| ++.++.++ ..++++.||+. +.|... ....|.|+
T Consensus 9 ~~~viI~G~---G~~G~~la~~L~~~g~-v~vid~~-~~~~~~~~-------~~~~~i~gd~~~~~~l~~a~i~~ad~vi 76 (234)
T 2aef_A 9 SRHVVICGW---SESTLECLRELRGSEV-FVLAEDE-NVRKKVLR-------SGANFVHGDPTRVSDLEKANVRGARAVI 76 (234)
T ss_dssp -CEEEEESC---CHHHHHHHHHSTTSEE-EEEESCG-GGHHHHHH-------TTCEEEESCTTCHHHHHHTTCTTCSEEE
T ss_pred CCEEEEECC---ChHHHHHHHHHHhCCe-EEEEECC-HHHHHHHh-------cCCeEEEcCCCCHHHHHhcCcchhcEEE
Confidence 467888885 4555677777776444 9999999 88776554 13788999986 445433 46789999
Q ss_pred EcCCCCCccH-HHHHHHHHhhcCCCCCCEEEEEe
Q 042616 118 IDCNIDIDGH-KNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 118 iD~~k~~~~y-~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+-.+. ... ......++.. .| +..+++.
T Consensus 77 ~~~~~--d~~n~~~~~~a~~~---~~-~~~iia~ 104 (234)
T 2aef_A 77 VDLES--DSETIHCILGIRKI---DE-SVRIIAE 104 (234)
T ss_dssp ECCSC--HHHHHHHHHHHHHH---CS-SSEEEEE
T ss_pred EcCCC--cHHHHHHHHHHHHH---CC-CCeEEEE
Confidence 87765 322 2233444443 34 4455554
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=90.91 E-value=0.84 Score=41.68 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh--hhhhhc-CCCccEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ--KLLMGD-YRGADFV 116 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~--~~L~~~-~~~~D~V 116 (220)
+..+|+-+|+|-+|+ .||+.+...+-.|+-||.| ++.++.+...+ .+..++||+. +.|.+. .+..|++
T Consensus 2 ~~M~iiI~G~G~vG~---~la~~L~~~~~~v~vId~d-~~~~~~~~~~~-----~~~~i~Gd~~~~~~L~~Agi~~ad~~ 72 (461)
T 4g65_A 2 NAMKIIILGAGQVGG---TLAENLVGENNDITIVDKD-GDRLRELQDKY-----DLRVVNGHASHPDVLHEAGAQDADML 72 (461)
T ss_dssp CCEEEEEECCSHHHH---HHHHHTCSTTEEEEEEESC-HHHHHHHHHHS-----SCEEEESCTTCHHHHHHHTTTTCSEE
T ss_pred CcCEEEEECCCHHHH---HHHHHHHHCCCCEEEEECC-HHHHHHHHHhc-----CcEEEEEcCCCHHHHHhcCCCcCCEE
Confidence 566899888765555 5677776645679999999 99888776654 3678999985 455443 3678988
Q ss_pred EEcCCC
Q 042616 117 LIDCNI 122 (220)
Q Consensus 117 fiD~~k 122 (220)
+.=.+.
T Consensus 73 ia~t~~ 78 (461)
T 4g65_A 73 VAVTNT 78 (461)
T ss_dssp EECCSC
T ss_pred EEEcCC
Confidence 754433
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=90.89 E-value=1.6 Score=36.96 Aligned_cols=99 Identities=15% Similarity=0.199 Sum_probs=58.1
Q ss_pred CCEEEEEcCCchHHH-HHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---------cc-C-------------CcEE
Q 042616 41 AQLIVMACSSIAVSR-TLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---------RY-A-------------NCIE 96 (220)
Q Consensus 41 a~~ILEIGtg~~G~s-Tl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---------g~-~-------------~~Ve 96 (220)
-++|.-||+|..|.. +..|+. .+-+|+.+|++ ++.++.+++.+. |. . .+++
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~----~G~~V~~~d~~-~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~ 89 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAA----TGHTVVLVDQT-EDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH----TTCEEEEECSC-HHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEE
T ss_pred CCEEEEECCCHHHHHHHHHHHh----CCCeEEEEECC-HHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceE
Confidence 367999998766652 223333 25689999999 888887654321 21 0 1243
Q ss_pred EEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 97 FVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 97 ~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+ ..|..+.+ ...|+||+-.+.+......+++.+.+. +. ++.+| +.|..
T Consensus 90 ~-~~~~~~~~----~~aD~Vi~avp~~~~~~~~v~~~l~~~--~~-~~~iv-~s~ts 137 (302)
T 1f0y_A 90 T-STDAASVV----HSTDLVVEAIVENLKVKNELFKRLDKF--AA-EHTIF-ASNTS 137 (302)
T ss_dssp E-ESCHHHHT----TSCSEEEECCCSCHHHHHHHHHHHTTT--SC-TTCEE-EECCS
T ss_pred E-ecCHHHhh----cCCCEEEEcCcCcHHHHHHHHHHHHhh--CC-CCeEE-EECCC
Confidence 3 23444333 468999987755111135677888776 64 46655 44543
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=90.86 E-value=3.2 Score=35.91 Aligned_cols=76 Identities=7% Similarity=-0.019 Sum_probs=43.3
Q ss_pred CCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEc--chhhhhhhcCCCccE
Q 042616 40 NAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKG--DAQKLLMGDYRGADF 115 (220)
Q Consensus 40 ~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~g--da~~~L~~~~~~~D~ 115 (220)
++.+|+-+| +|.+|++.+..... ......|+.+|.+ ++ ...+..... ....+++.+.+ |..+.+ ...|+
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~-~g~~~ev~l~Di~-~~-~~~~~dL~~~~~~~~v~~~~~t~d~~~al----~gaDv 79 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKM-NPLVSVLHLYDVV-NA-PGVTADISHMDTGAVVRGFLGQQQLEAAL----TGMDL 79 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHH-CTTEEEEEEEESS-SH-HHHHHHHHTSCSSCEEEEEESHHHHHHHH----TTCSE
T ss_pred CCCEEEEECCCChHHHHHHHHHHh-CCCCCEEEEEeCC-Cc-HhHHHHhhcccccceEEEEeCCCCHHHHc----CCCCE
Confidence 456899999 78888876544322 1112589999998 65 222222222 22124554444 333433 46899
Q ss_pred EEEcCCC
Q 042616 116 VLIDCNI 122 (220)
Q Consensus 116 VfiD~~k 122 (220)
||+-+..
T Consensus 80 Vi~~ag~ 86 (326)
T 1smk_A 80 IIVPAGV 86 (326)
T ss_dssp EEECCCC
T ss_pred EEEcCCc
Confidence 9988764
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=90.82 E-value=0.18 Score=43.82 Aligned_cols=76 Identities=12% Similarity=0.034 Sum_probs=52.0
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ 103 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~ 103 (220)
.+++..+.|-.+ ...+...|||--+| +|.+++.... .+.+.+++|.+ +..++.|++.++......+.+++|+.
T Consensus 237 kp~~l~~~~i~~-~~~~~~~VlDpF~G-sGtt~~aa~~----~gr~~ig~e~~-~~~~~~~~~r~~~~~~~~~~~~~~~~ 309 (323)
T 1boo_A 237 FPAKLPEFFIRM-LTEPDDLVVDIFGG-SNTTGLVAER----ESRKWISFEMK-PEYVAASAFRFLDNNISEEKITDIYN 309 (323)
T ss_dssp CCTHHHHHHHHH-HCCTTCEEEETTCT-TCHHHHHHHH----TTCEEEEEESC-HHHHHHHHGGGSCSCSCHHHHHHHHH
T ss_pred CCHHHHHHHHHH-hCCCCCEEEECCCC-CCHHHHHHHH----cCCCEEEEeCC-HHHHHHHHHHHHhcccchHHHHHHHH
Confidence 334444433332 24567899999876 7876553222 37799999999 99999999999833334667778887
Q ss_pred hhh
Q 042616 104 KLL 106 (220)
Q Consensus 104 ~~L 106 (220)
++.
T Consensus 310 ~i~ 312 (323)
T 1boo_A 310 RIL 312 (323)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=90.82 E-value=0.48 Score=40.36 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHH----HHHHHHhc-ccCCcEEEEEcchhhh--hhhcCCC
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDI----DASKKSLG-RYANCIEFVKGDAQKL--LMGDYRG 112 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~----~~Ar~~l~-g~~~~Ve~v~gda~~~--L~~~~~~ 112 (220)
..++||-+|+ +|+.+.+|+..+...+-+|++++.+ +... +..+..+. ....+++++.+|..+. +......
T Consensus 24 ~~~~vlVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 100 (351)
T 3ruf_A 24 SPKTWLITGV--AGFIGSNLLEKLLKLNQVVIGLDNF-STGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKG 100 (351)
T ss_dssp SCCEEEEETT--TSHHHHHHHHHHHHTTCEEEEEECC-SSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTT
T ss_pred CCCeEEEECC--CcHHHHHHHHHHHHCCCEEEEEeCC-CCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcC
Confidence 5688999983 6777778877776557899999986 4322 22222211 1115799999997542 3344568
Q ss_pred ccEEEEcCCC
Q 042616 113 ADFVLIDCNI 122 (220)
Q Consensus 113 ~D~VfiD~~k 122 (220)
+|.||--+..
T Consensus 101 ~d~Vih~A~~ 110 (351)
T 3ruf_A 101 VDHVLHQAAL 110 (351)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCcc
Confidence 9999977654
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.80 E-value=0.53 Score=41.00 Aligned_cols=101 Identities=9% Similarity=0.010 Sum_probs=62.4
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc--hhhhhhhc--CC
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD--AQKLLMGD--YR 111 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd--a~~~L~~~--~~ 111 (220)
+...+.++||-+|+|++|..++.+|+++. +.+|++++.+ +++.+.+++. |. +. ++.-. ..+.+..+ ..
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~--Ga~Vi~~~~~-~~~~~~~~~l--Ga-~~--vi~~~~~~~~~v~~~~~g~ 253 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMT--PATVIALDVK-EEKLKLAERL--GA-DH--VVDARRDPVKQVMELTRGR 253 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHC--CCEEEEEESS-HHHHHHHHHT--TC-SE--EEETTSCHHHHHHHHTTTC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCC-HHHHHHHHHh--CC-CE--EEeccchHHHHHHHHhCCC
Confidence 34456789999999889999999998762 4699999999 8999888753 22 11 12211 22223222 23
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.+|+|| |+-- ......++.+.+ + + ||.++.-..
T Consensus 254 g~Dvvi-d~~G--~~~~~~~~~~~~---~-~-~G~~v~~g~ 286 (359)
T 1h2b_A 254 GVNVAM-DFVG--SQATVDYTPYLL---G-R-MGRLIIVGY 286 (359)
T ss_dssp CEEEEE-ESSC--CHHHHHHGGGGE---E-E-EEEEEECCC
T ss_pred CCcEEE-ECCC--CchHHHHHHHhh---c-C-CCEEEEEeC
Confidence 799887 4433 211114555554 3 4 777776544
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=90.66 E-value=4.2 Score=35.12 Aligned_cols=76 Identities=14% Similarity=0.096 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHH-HHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDA-SKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~-Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
+..+|.-||+|.+|++.+.+... ......|+-+|.+ +++++. +...-. .+...+++..++ .+.+ ...|+|
T Consensus 4 ~~~KI~IiGaG~vG~~~a~~l~~-~~~~~el~L~Di~-~~~~~g~~~dl~~~~~~~~~~~v~~~~-~~a~----~~aDvV 76 (318)
T 1ez4_A 4 NHQKVVLVGDGAVGSSYAFAMAQ-QGIAEEFVIVDVV-KDRTKGDALDLEDAQAFTAPKKIYSGE-YSDC----KDADLV 76 (318)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHH-HTCCSEEEEECSS-HHHHHHHHHHHHGGGGGSCCCEEEECC-GGGG----TTCSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHc-CCCCCEEEEEeCC-chHHHHHHHHHHHHHHhcCCeEEEECC-HHHh----CCCCEE
Confidence 34689999999888876655433 3335689999999 777764 333322 232456666544 3323 467999
Q ss_pred EEcCCC
Q 042616 117 LIDCNI 122 (220)
Q Consensus 117 fiD~~k 122 (220)
++-+..
T Consensus 77 ii~ag~ 82 (318)
T 1ez4_A 77 VITAGA 82 (318)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998765
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=90.64 E-value=2.3 Score=38.75 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=71.2
Q ss_pred hHHHHHHHHHhh-CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh-
Q 042616 27 DVGEFISALAAG-NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK- 104 (220)
Q Consensus 27 ~~~~~L~~La~~-~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~- 104 (220)
..-+++..+-.. .+.++|+-+|. |-.+..||+.+.+ .-.|.-||.| +++++...+.+ +++.+++||+.+
T Consensus 220 ~i~~~~~~~g~~~~~~~~v~I~Gg---G~ig~~lA~~L~~-~~~v~iIE~d-~~r~~~la~~l----~~~~Vi~GD~td~ 290 (461)
T 4g65_A 220 HIRSVMSELQRLEKPYRRIMIVGG---GNIGASLAKRLEQ-TYSVKLIERN-LQRAEKLSEEL----ENTIVFCGDAADQ 290 (461)
T ss_dssp THHHHHHHTTGGGSCCCEEEEECC---SHHHHHHHHHHTT-TSEEEEEESC-HHHHHHHHHHC----TTSEEEESCTTCH
T ss_pred hHHHHHHhhccccccccEEEEEcc---hHHHHHHHHHhhh-cCceEEEecC-HHHHHHHHHHC----CCceEEeccccch
Confidence 345566555443 34688998884 4455577777766 6899999999 88887776665 568899999965
Q ss_pred -hhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 105 -LLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 105 -~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+|.+. ....|.++.=.+. +-.+++-.+.-+. +..+-.+..+.|.
T Consensus 291 ~~L~ee~i~~~D~~ia~T~~---De~Ni~~~llAk~-~gv~kvIa~vn~~ 336 (461)
T 4g65_A 291 ELLTEENIDQVDVFIALTNE---DETNIMSAMLAKR-MGAKKVMVLIQRG 336 (461)
T ss_dssp HHHHHTTGGGCSEEEECCSC---HHHHHHHHHHHHH-TTCSEEEEECSCH
T ss_pred hhHhhcCchhhcEEEEcccC---cHHHHHHHHHHHH-cCCcccccccccc
Confidence 55442 2678988866655 2334433322221 3344455555544
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=90.63 E-value=1.3 Score=35.75 Aligned_cols=73 Identities=11% Similarity=0.123 Sum_probs=51.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCC-cEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh--hhhhcCCCccEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTG-GRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK--LLMGDYRGADFVL 117 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~-grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~--~L~~~~~~~D~Vf 117 (220)
.++||-+|. +|.....+++.+...+ -+|+++..+ ++.++. -...+++++.+|..+ .+......+|.||
T Consensus 23 mk~vlVtGa--tG~iG~~l~~~L~~~G~~~V~~~~R~-~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv 93 (236)
T 3qvo_A 23 MKNVLILGA--GGQIARHVINQLADKQTIKQTLFARQ-PAKIHK------PYPTNSQIIMGDVLNHAALKQAMQGQDIVY 93 (236)
T ss_dssp CEEEEEETT--TSHHHHHHHHHHTTCTTEEEEEEESS-GGGSCS------SCCTTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred ccEEEEEeC--CcHHHHHHHHHHHhCCCceEEEEEcC-hhhhcc------cccCCcEEEEecCCCHHHHHHHhcCCCEEE
Confidence 468998883 6777778888877756 589999999 654311 122579999999754 2333346789999
Q ss_pred EcCCC
Q 042616 118 IDCNI 122 (220)
Q Consensus 118 iD~~k 122 (220)
..+..
T Consensus 94 ~~a~~ 98 (236)
T 3qvo_A 94 ANLTG 98 (236)
T ss_dssp EECCS
T ss_pred EcCCC
Confidence 87765
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=90.61 E-value=5 Score=34.41 Aligned_cols=100 Identities=18% Similarity=0.094 Sum_probs=55.6
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-cc--CCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RY--ANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~--~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+|.-||+|..|..-+........ ...|+.+|++ ++.++.....+. +. .....+...|. +.+ ...|+||+-
T Consensus 2 kI~VIGaG~~G~~la~~l~~~g~-~~~V~l~D~~-~~~~~~~~~~l~~~~~~~~~~~i~~~d~-~~~----~~aDvViia 74 (319)
T 1a5z_A 2 KIGIVGLGRVGSSTAFALLMKGF-AREMVLIDVD-KKRAEGDALDLIHGTPFTRRANIYAGDY-ADL----KGSDVVIVA 74 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSS-HHHHHHHHHHHHHHGGGSCCCEEEECCG-GGG----TTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-CCeEEEEeCC-hHHHHHHHHHHHhhhhhcCCcEEEeCCH-HHh----CCCCEEEEc
Confidence 57789988777654432222111 3489999999 877766443332 21 11233333442 322 468999998
Q ss_pred CCCCCc--------------cHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 120 CNIDID--------------GHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 120 ~~k~~~--------------~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
...... -..++++.+.+. . |++-+|++-|-
T Consensus 75 v~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~--~-~~~~ii~~tNp 118 (319)
T 1a5z_A 75 AGVPQKPGETRLQLLGRNARVMKEIARNVSKY--A-PDSIVIVVTNP 118 (319)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH--C-TTCEEEECSSS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh--C-CCeEEEEeCCc
Confidence 775111 035667777776 2 53444454443
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.59 E-value=0.54 Score=39.16 Aligned_cols=80 Identities=10% Similarity=0.096 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcchhhh---hhhc------
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQKL---LMGD------ 109 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~~---L~~~------ 109 (220)
+.+.||-.|+ +|.....+|+.+...|.+|+.++.+ ++..+.+.+.+. ....+++++..|..+. +..+
T Consensus 11 ~~k~vlITGa--s~GIG~~~a~~L~~~G~~V~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 11 KRRCAVVTGG--NKGIGFEICKQLSSNGIMVVLTCRD-VTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp -CCEEEESSC--SSHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEecC--CchHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHH
Confidence 4678888885 3334445555554448899999999 887777666665 2235799999887543 1111
Q ss_pred -CCCccEEEEcCCC
Q 042616 110 -YRGADFVLIDCNI 122 (220)
Q Consensus 110 -~~~~D~VfiD~~k 122 (220)
.+++|.+|..+..
T Consensus 88 ~~g~iD~lv~nAg~ 101 (311)
T 3o26_A 88 HFGKLDILVNNAGV 101 (311)
T ss_dssp HHSSCCEEEECCCC
T ss_pred hCCCCCEEEECCcc
Confidence 3589999988875
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=90.56 E-value=1.1 Score=35.05 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=47.7
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
+||-+|. +|.....+++.+...+-+|+++..+ ++..+.. . .+++++.+|..+.-......+|.||.-+..
T Consensus 2 kvlVtGa--tG~iG~~l~~~L~~~g~~V~~~~R~-~~~~~~~----~---~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 2 KIGIIGA--TGRAGSRILEEAKNRGHEVTAIVRN-AGKITQT----H---KDINILQKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp EEEEETT--TSHHHHHHHHHHHHTTCEEEEEESC-SHHHHHH----C---SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred eEEEEcC--CchhHHHHHHHHHhCCCEEEEEEcC-chhhhhc----c---CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence 5888883 5666666666665557899999999 7654322 1 468899999865322223578999977654
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=90.56 E-value=5 Score=34.91 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-c--c-CCcEEEEEcchhhhhhhcCCCccE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-R--Y-ANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g--~-~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
+..+|.-||+|..|++.+....... ..+.|+.+|.+ +++++.-..-+. + + ...+++..++... + ...|+
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~~-~~~~l~l~D~~-~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a-~----~~aDv 76 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQG-ITDELVVIDVN-KEKAMGDVMDLNHGKAFAPQPVKTSYGTYED-C----KDADI 76 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHT-CCSEEEEECSC-HHHHHHHHHHHHHTGGGSSSCCEEEEECGGG-G----TTCSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-CCceEEEEecc-hHHHHHHHHHHHhccccccCCeEEEeCcHHH-h----CCCCE
Confidence 4678999999888887665433322 24699999999 776654222232 2 2 2346666666432 2 46799
Q ss_pred EEEcCCC
Q 042616 116 VLIDCNI 122 (220)
Q Consensus 116 VfiD~~k 122 (220)
||+-+..
T Consensus 77 Vvi~ag~ 83 (326)
T 3pqe_A 77 VCICAGA 83 (326)
T ss_dssp EEECCSC
T ss_pred EEEeccc
Confidence 9998754
|
| >2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 | Back alignment and structure |
|---|
Probab=90.53 E-value=3 Score=40.37 Aligned_cols=80 Identities=10% Similarity=-0.010 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCchHHHHHH-HHHHcCCCCcEEEEEeCCch------------------hHHHHHHHHhccc--CCcEEEE
Q 042616 40 NAQLIVMACSSIAVSRTLA-LVAAARQTGGRVVCILSGVI------------------GDIDASKKSLGRY--ANCIEFV 98 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~-LA~A~~~~~grV~tIE~d~~------------------~~~~~Ar~~l~g~--~~~Ve~v 98 (220)
+..+||-+|+|+.|...+. ||.+ . -|+++-+|.|.- .+++.|++.++.+ .-+|+.+
T Consensus 410 ~~~~vlvvG~GglG~~~~~~L~~~-G--vg~i~l~D~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~~l~~~np~~~v~~~ 486 (805)
T 2nvu_B 410 DTCKVLVIGAGGLGCELLKNLALS-G--FRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPH 486 (805)
T ss_dssp HTCCEEEECCSSHHHHHHHHHHTT-T--CCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCEEEEE
T ss_pred hCCeEEEECCCHHHHHHHHHHHHc-C--CCcEEEECCCeecccccccccccchhhcCChHHHHHHHHHHHHCCCCEEEEE
Confidence 3567888999889987664 4432 2 489999999821 2456667766522 2346666
Q ss_pred EcchhhhhhhcCCCccEEEEcCCC
Q 042616 99 KGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 99 ~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
.....+.-..+...||+|+.-.+.
T Consensus 487 ~~~~~~~~~~~~~~~d~vv~~~d~ 510 (805)
T 2nvu_B 487 FNKIQDFNDTFYRQFHIIVCGLDS 510 (805)
T ss_dssp ESCGGGSCHHHHHTCSEEEECCSC
T ss_pred eccccccHHHHHhcCCEEEECCCC
Confidence 666544222223579988754443
|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
Probab=90.41 E-value=0.21 Score=42.22 Aligned_cols=40 Identities=25% Similarity=0.239 Sum_probs=27.9
Q ss_pred CCCEEEEEcC-CchHHHHHH--HHHHcCCCCcEEEEEeCCchhH
Q 042616 40 NAQLIVMACS-SIAVSRTLA--LVAAARQTGGRVVCILSGVIGD 80 (220)
Q Consensus 40 ~a~~ILEIGt-g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~ 80 (220)
+++.|+-.++ |+.|-+|+. ||.++.+.+.+|.-||.| ...
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D-~~~ 123 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD-MRK 123 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC-SSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC-CCC
Confidence 4565665554 457877764 777776667899999999 654
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=90.40 E-value=0.63 Score=42.58 Aligned_cols=107 Identities=17% Similarity=0.100 Sum_probs=58.8
Q ss_pred CCEEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHH---HHHHHhcccCCcEEEEE----cchhhhh----h
Q 042616 41 AQLIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGDID---ASKKSLGRYANCIEFVK----GDAQKLL----M 107 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~---~Ar~~l~g~~~~Ve~v~----gda~~~L----~ 107 (220)
|..|+-+|.+++|=+|+. ||..+...+.+|.-++.| +.+.. ..+...+. ..+.++. .|+.+++ .
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D-~~R~aa~eqL~~~~~~--~gvpv~~~~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD-TWRPGAYHQLRQLLDR--YHIEVFGNPQEKDAIKLAKEGVD 176 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC-CSSTHHHHHHHHHHGG--GTCEEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC-CcchhHHHHHHHHHHh--cCCcEEecCCCCCHHHHHHHHHH
Confidence 567788898679999885 666666656777666666 44332 22222221 2244443 2333322 1
Q ss_pred hc-CCCccEEEEcCCCCCc---cHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 108 GD-YRGADFVLIDCNIDID---GHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 108 ~~-~~~~D~VfiD~~k~~~---~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.. ...+|+|+||..-... .....+..+... ..|...++|.|-.
T Consensus 177 ~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~--~~pd~vlLVvDA~ 223 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNV--IHPHEVILVIDGT 223 (443)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHH--HCCSEEEEEEEGG
T ss_pred HHHhCCCCEEEEECCCcccchHHHHHHHHHHHHh--hcCceEEEEEeCC
Confidence 21 2469999999876222 122334444444 4565566666633
|
| >3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=90.38 E-value=2.6 Score=29.79 Aligned_cols=68 Identities=13% Similarity=0.064 Sum_probs=47.1
Q ss_pred cEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 68 GRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 68 grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
-+|.-||.+ +...+..+..++.....+ ....+..+.+..+...+|+|++|......+-.+.++.+...
T Consensus 4 ~~ilivdd~-~~~~~~l~~~L~~~~~~v-~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 71 (135)
T 3eqz_A 4 NRVFIVDDD-TLTCNLLKTIVEPIFGNV-EAFQHPRAFLTLSLNKQDIIILDLMMPDMDGIEVIRHLAEH 71 (135)
T ss_dssp CEEEEECSC-HHHHHHHHHHHTTTCSCE-EEESCHHHHTTSCCCTTEEEEEECCTTTTHHHHHHHHHHHT
T ss_pred ceEEEEeCC-HHHHHHHHHHHHhhccee-eeecCHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 588999999 888888888887432233 34556666664443349999999887334556778888775
|
| >3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=90.31 E-value=1 Score=32.14 Aligned_cols=68 Identities=16% Similarity=0.035 Sum_probs=46.5
Q ss_pred EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 69 RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 69 rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
+|.-||.+ +...+..+..++.....+.....+..+.+..+ ..++|+|++|......+..+.++.+...
T Consensus 3 ~ilivdd~-~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 71 (134)
T 3f6c_A 3 NAIIIDDH-PLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKR 71 (134)
T ss_dssp EEEEECCC-HHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHT
T ss_pred EEEEEcCC-HHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhc
Confidence 67889999 88888888888733222332455555554332 2579999999887445667888888876
|
| >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} | Back alignment and structure |
|---|
Probab=90.27 E-value=2.5 Score=31.04 Aligned_cols=69 Identities=13% Similarity=0.049 Sum_probs=48.8
Q ss_pred CcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 67 GGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 67 ~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
.-+|.-||.+ +...+..+..++...-.+. ...+..+.+..+ ..++|+|++|......+..+.++.+...
T Consensus 7 ~~~iLivdd~-~~~~~~l~~~L~~~g~~v~-~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 76 (154)
T 2rjn_A 7 NYTVMLVDDE-QPILNSLKRLIKRLGCNII-TFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKS 76 (154)
T ss_dssp CCEEEEECSC-HHHHHHHHHHHHTTTCEEE-EESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEcCC-HHHHHHHHHHHHHcCCeEE-EeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHh
Confidence 4689999999 8888888888873222344 556666666443 3579999999876334567778888775
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=90.25 E-value=5.9 Score=34.30 Aligned_cols=77 Identities=8% Similarity=0.034 Sum_probs=49.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHH-HHHHhc--ccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDA-SKKSLG--RYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~-Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
.+..+|.-||+|.+|++.+.+.. .......|+-+|.+ +++++. +..... .+...+++..++ .+.+ ...|+
T Consensus 7 ~~~~KI~IiGaG~vG~~la~~l~-~~~~~~el~L~Di~-~~~~~g~~~dl~~~~~~~~~~~i~~~~-~~a~----~~aDv 79 (326)
T 2zqz_A 7 KDHQKVILVGDGAVGSSYAYAMV-LQGIAQEIGIVDIF-KDKTKGDAIDLSNALPFTSPKKIYSAE-YSDA----KDADL 79 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSC-HHHHHHHHHHHHTTGGGSCCCEEEECC-GGGG----GGCSE
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-cCCCCCEEEEEeCC-chHhHHHHHHHHHHHHhcCCeEEEECC-HHHh----CCCCE
Confidence 34568999999988887666543 33335689999999 777654 333222 222456666554 3323 45799
Q ss_pred EEEcCCC
Q 042616 116 VLIDCNI 122 (220)
Q Consensus 116 VfiD~~k 122 (220)
|++-+..
T Consensus 80 Vii~ag~ 86 (326)
T 2zqz_A 80 VVITAGA 86 (326)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9998765
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=90.25 E-value=1.2 Score=38.42 Aligned_cols=58 Identities=12% Similarity=0.054 Sum_probs=40.8
Q ss_pred CCCEEEEEcCCchHHHHHH-HHHHcCCCCcEEEEEeCCch------------------hHHHHHHHHhcccC--CcEEEE
Q 042616 40 NAQLIVMACSSIAVSRTLA-LVAAARQTGGRVVCILSGVI------------------GDIDASKKSLGRYA--NCIEFV 98 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~-LA~A~~~~~grV~tIE~d~~------------------~~~~~Ar~~l~g~~--~~Ve~v 98 (220)
+..+|+-+|+|+.|...+. ||.+ . -|+++-+|.| . .+++.|++.+..+. -+|+.+
T Consensus 35 ~~~~VlVvGaGGlGs~va~~La~a-G--VG~i~lvD~D-~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~ 110 (292)
T 3h8v_A 35 RTFAVAIVGVGGVGSVTAEMLTRC-G--IGKLLLFDYD-KVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVH 110 (292)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHH-T--CSEEEEECCC-BC------------CCTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred hCCeEEEECcCHHHHHHHHHHHHc-C--CCEEEEECCC-ccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEe
Confidence 5578999999988887664 5554 2 4899999999 6 67777888776332 345555
Q ss_pred Ecc
Q 042616 99 KGD 101 (220)
Q Consensus 99 ~gd 101 (220)
..+
T Consensus 111 ~~~ 113 (292)
T 3h8v_A 111 NYN 113 (292)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=90.24 E-value=1.6 Score=34.40 Aligned_cols=71 Identities=18% Similarity=0.194 Sum_probs=48.6
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
+||-+|+ +|+....++..+...+-+|+++..+ ++..+.. . ...++++.+|..+.-......+|.||.-+..
T Consensus 2 kilVtGa--tG~iG~~l~~~L~~~g~~V~~~~R~-~~~~~~~---~---~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 2 KIAVLGA--TGRAGSAIVAEARRRGHEVLAVVRD-PQKAADR---L---GATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp EEEEETT--TSHHHHHHHHHHHHTTCEEEEEESC-HHHHHHH---T---CTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred EEEEEcC--CCHHHHHHHHHHHHCCCEEEEEEec-ccccccc---c---CCCceEEecccccccHhhcccCCEEEECCcc
Confidence 5888884 5777777777665557899999999 7654321 1 2468999999865322223578999877644
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=90.23 E-value=0.86 Score=37.02 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hhhc-------C
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LMGD-------Y 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~-------~ 110 (220)
+.+.||-.|+ +|.....+++.+.+.+.+|+.++.+ ++..+...+.++....+++++..|..+. +..+ .
T Consensus 12 ~~k~vlItGa--sggiG~~la~~l~~~G~~V~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (260)
T 3awd_A 12 DNRVAIVTGG--AQNIGLACVTALAEAGARVIIADLD-EAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQE 88 (260)
T ss_dssp TTCEEEEETT--TSHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC--CchHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4678998884 4556666666665557899999999 7776655555543235689999886432 1111 2
Q ss_pred CCccEEEEcCC
Q 042616 111 RGADFVLIDCN 121 (220)
Q Consensus 111 ~~~D~VfiD~~ 121 (220)
+++|.||.-+.
T Consensus 89 ~~id~vi~~Ag 99 (260)
T 3awd_A 89 GRVDILVACAG 99 (260)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 47899998765
|
| >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=90.09 E-value=1.9 Score=30.50 Aligned_cols=69 Identities=7% Similarity=-0.014 Sum_probs=46.4
Q ss_pred CcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 67 GGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 67 ~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
+.+|.-||.+ +...+..+..++.....+. ...++.+.+..+ ..++|+|++|......+..+.++.+...
T Consensus 7 ~~~ilivdd~-~~~~~~l~~~L~~~g~~v~-~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 76 (130)
T 3eod_A 7 GKQILIVEDE-QVFRSLLDSWFSSLGATTV-LAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNR 76 (130)
T ss_dssp TCEEEEECSC-HHHHHHHHHHHHHTTCEEE-EESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHT
T ss_pred CCeEEEEeCC-HHHHHHHHHHHHhCCceEE-EeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 5689999999 8888888888873322343 366777766544 3579999999876324456777877775
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=90.09 E-value=0.65 Score=42.22 Aligned_cols=106 Identities=13% Similarity=0.081 Sum_probs=58.2
Q ss_pred CCEEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHHHH---HHhcccCCcEEEEEc----chhhh----hh
Q 042616 41 AQLIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDASK---KSLGRYANCIEFVKG----DAQKL----LM 107 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~Ar---~~l~g~~~~Ve~v~g----da~~~----L~ 107 (220)
++.|+-+|.+++|-+|+. ||..+.+.+++|.-++.| ........ ...+. .++.++.. ++.++ +.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D-~~r~aa~~qL~~~~~~--~gv~v~~~~~~~~p~~i~~~~l~ 174 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD-TQRPAAREQLRLLGEK--VGVPVLEVMDGESPESIRRRVEE 174 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC-SSCHHHHHHHHHHHHH--HTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc-ccCchhHHHHHHhccc--CCccEEecCCCCCHHHHHHHHHH
Confidence 455666787678998875 777676668899888888 65543322 11111 12333332 33332 32
Q ss_pred hc-CCCccEEEEcCCCCCccHHHHH---HHHHhhcCCCCCCEEEEEec
Q 042616 108 GD-YRGADFVLIDCNIDIDGHKNVF---RAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 108 ~~-~~~~D~VfiD~~k~~~~y~~~l---~~l~~~~~L~~~Ggviv~dN 151 (220)
.+ ...||+|+||++.......... ..+... +.|...++|.|-
T Consensus 175 ~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~--~~pd~vlLVvDa 220 (425)
T 2ffh_A 175 KARLEARDLILVDTAGRLQIDEPLMGELARLKEV--LGPDEVLLVLDA 220 (425)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHH--HCCSEEEEEEEG
T ss_pred HHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhc--cCCceEEEEEec
Confidence 22 2679999999876222222233 333443 346455666663
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=90.07 E-value=0.58 Score=37.57 Aligned_cols=32 Identities=13% Similarity=0.034 Sum_probs=25.9
Q ss_pred EcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchh
Q 042616 47 ACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIG 79 (220)
Q Consensus 47 IGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~ 79 (220)
-|-|++|-||+. ||.++...|.+|.-||.| ++
T Consensus 6 s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D-~~ 39 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGD-PD 39 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEEC-TT
T ss_pred ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC-CC
Confidence 566779999886 777777767899999999 74
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=90.07 E-value=0.87 Score=37.04 Aligned_cols=81 Identities=16% Similarity=0.106 Sum_probs=55.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hhhc-------
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LMGD------- 109 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~------- 109 (220)
.+.+.+|-.|+ +|.....+|+.+.+.+.+|+.++.+ ++.++...+.+.....++.++..|..+. +..+
T Consensus 7 ~~~k~vlITGa--s~giG~~~a~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 7 FENKVGIVTGS--GGGIGQAYAEALAREGAAVVVADIN-AEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp TTTCEEEEETT--TSHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECC--CChHHHHHHHHHHHCCCEEEEEcCC-HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35678898885 3444556666655558899999999 8887777666653336788999887542 1111
Q ss_pred CCCccEEEEcCCC
Q 042616 110 YRGADFVLIDCNI 122 (220)
Q Consensus 110 ~~~~D~VfiD~~k 122 (220)
.+++|.++..+..
T Consensus 84 ~g~id~li~~Ag~ 96 (253)
T 3qiv_A 84 FGGIDYLVNNAAI 96 (253)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 2579999987753
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=90.06 E-value=4.3 Score=36.33 Aligned_cols=127 Identities=14% Similarity=0.118 Sum_probs=71.9
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc-
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG- 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g- 100 (220)
+.-.|...+|-..+++..+....+-+++| +....+.+...+.+ +.+|++-++.=.......+..+....-++.++..
T Consensus 78 r~~~p~~~~le~~lA~l~g~~~~v~~~sG-~~Ai~~al~al~~~-Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~ 155 (430)
T 3ri6_A 78 RSSNPTVEDLEQRLKNLTGALGVLALGSG-MAAISTAILTLARA-GDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM 155 (430)
T ss_dssp --CCHHHHHHHHHHHHHHTCSEEEEESCH-HHHHHHHHHHHCCT-TCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEECCH-HHHHHHHHHHHhCC-CCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC
Confidence 45668888999999998888877666543 33333333333444 7788887776223333333333322223444443
Q ss_pred chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
|..++...+.....+|++..+... .+..++.+.+.+ .|.++|+||+...+
T Consensus 156 d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~------~g~~livD~a~~~~ 209 (430)
T 3ri6_A 156 DSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHA------KGIPLVVDTTMTPP 209 (430)
T ss_dssp CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHT------TTCCEEEECTTSCT
T ss_pred CHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHH------cCCEEEEECCCccc
Confidence 444443333456789998765411 233444444433 48999999998654
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=90.05 E-value=6.4 Score=33.74 Aligned_cols=103 Identities=13% Similarity=0.083 Sum_probs=60.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHH-HHHHhcc---cCCcEEEEEcchhhhhhhcCCCccE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDA-SKKSLGR---YANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~-Ar~~l~g---~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
+..+|.-||+|.+|++-+... +.....++|+-+|.+ ++.++. +...... +...+++..++. +. ....|+
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l-~~~~~~~ev~l~Di~-~~~~~~~~~dl~~~~~~~~~~~~i~~~~~-~a----l~~aDv 77 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFAL-MNQGIADEIVLIDAN-ESKAIGDAMDFNHGKVFAPKPVDIWHGDY-DD----CRDADL 77 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHH-HHHTCCSEEEEECSS-HHHHHHHHHHHHHHTTSSSSCCEEEECCG-GG----TTTCSE
T ss_pred CCCEEEEECcCHHHHHHHHHH-HhCCCCCEEEEEeCC-cchHHHHHhhHHHHhhhcCCCeEEEcCcH-HH----hCCCCE
Confidence 457899999988887654433 333335699999999 765553 2332221 112455555443 32 346899
Q ss_pred EEEcCCCCC--------------ccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 116 VLIDCNIDI--------------DGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 116 VfiD~~k~~--------------~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|++-++... .-..++.+.+.+. . |++-++++-|-
T Consensus 78 Viia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~--~-p~a~~iv~tNP 125 (316)
T 1ldn_A 78 VVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS--G-FQGLFLVATNP 125 (316)
T ss_dssp EEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH--T-CCSEEEECSSS
T ss_pred EEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHH--C-CCCEEEEeCCc
Confidence 999865521 1124556666666 2 64555665553
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.03 E-value=0.84 Score=37.84 Aligned_cols=80 Identities=16% Similarity=0.183 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh--hhhc-----
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL--LMGD----- 109 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~--L~~~----- 109 (220)
.+.+.+|-.|+ +|.....+++.+.+.+.+|+.++.+ ++.++...+.+. +...++.++.+|..+. +..+
T Consensus 30 l~~k~vlVTGa--sggIG~~la~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 106 (279)
T 1xg5_A 30 WRDRLALVTGA--SGGIGAAVARALVQQGLKVVGCART-VGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR 106 (279)
T ss_dssp GTTCEEEEEST--TSHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECC--CchHHHHHHHHHHHCCCEEEEEECC-hHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 35688998884 4555666666555557899999999 877766655554 4345688888886432 1111
Q ss_pred --CCCccEEEEcCC
Q 042616 110 --YRGADFVLIDCN 121 (220)
Q Consensus 110 --~~~~D~VfiD~~ 121 (220)
.+++|.||.-+.
T Consensus 107 ~~~g~iD~vi~~Ag 120 (279)
T 1xg5_A 107 SQHSGVDICINNAG 120 (279)
T ss_dssp HHHCCCSEEEECCC
T ss_pred HhCCCCCEEEECCC
Confidence 247999997765
|
| >3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} | Back alignment and structure |
|---|
Probab=90.01 E-value=2.2 Score=31.39 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=49.2
Q ss_pred CcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 67 GGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 67 ~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
..+|.-||.+ +...+..+..++...-.|. ...+..+.+..+ ..++|+|++|......+..+.++.+...
T Consensus 14 ~~~ILivdd~-~~~~~~l~~~L~~~g~~v~-~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 83 (153)
T 3hv2_A 14 RPEILLVDSQ-EVILQRLQQLLSPLPYTLH-FARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQ 83 (153)
T ss_dssp CCEEEEECSC-HHHHHHHHHHHTTSSCEEE-EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHH
T ss_pred CceEEEECCC-HHHHHHHHHHhcccCcEEE-EECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhH
Confidence 4689999999 8888888888873322343 456666665433 3579999999877435667788888776
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=89.96 E-value=9.4 Score=33.69 Aligned_cols=125 Identities=18% Similarity=0.084 Sum_probs=72.6
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHH-HHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALV-AAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA-~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
+.-.|...+|-..+++..+...++-.++ |..++.++ .++-..+.+|++.++.=.......+..+....-++.++..
T Consensus 77 r~~~p~~~~l~~~la~~~g~~~~~~~~s---G~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~ 153 (414)
T 3ndn_A 77 RYGNPTVSVFEERLRLIEGAPAAFATAS---GMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDG 153 (414)
T ss_dssp TTCCHHHHHHHHHHHHHHTCSEEEEESS---HHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred CCCChHHHHHHHHHHHHHCCCcEEEECC---HHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCC
Confidence 4566888888888988888888876653 44444432 2333337788888776233334444433322224444443
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+.....+|++..+... .+..++.+.+.+ .|.+||+|++...
T Consensus 154 ~d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~------~g~~livDe~~~~ 207 (414)
T 3ndn_A 154 DDLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHA------AGAKVVLDNVFAT 207 (414)
T ss_dssp TCHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHH------TTCEEEEECTTTH
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHH------cCCEEEEECCCcc
Confidence 444433333456789998665411 233444444443 4899999999753
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=89.83 E-value=0.91 Score=36.05 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=54.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHcC-CCCcEEEEEeCCchh-HHHHHHHHhcccCCcEEEEEcchhh--hhhhcCCCccEEE
Q 042616 42 QLIVMACSSIAVSRTLALVAAAR-QTGGRVVCILSGVIG-DIDASKKSLGRYANCIEFVKGDAQK--LLMGDYRGADFVL 117 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~-~~~grV~tIE~d~~~-~~~~Ar~~l~g~~~~Ve~v~gda~~--~L~~~~~~~D~Vf 117 (220)
++||-+|. +|.....+++.+. ..+-+|+.+..+ ++ .++... . ...+++++.+|..+ .+......+|.||
T Consensus 6 k~vlVtGa--sg~iG~~~~~~l~~~~g~~V~~~~r~-~~~~~~~~~---~-~~~~~~~~~~D~~d~~~~~~~~~~~d~vv 78 (221)
T 3r6d_A 6 XYITILGA--AGQIAQXLTATLLTYTDMHITLYGRQ-LKTRIPPEI---I-DHERVTVIEGSFQNPGXLEQAVTNAEVVF 78 (221)
T ss_dssp SEEEEEST--TSHHHHHHHHHHHHHCCCEEEEEESS-HHHHSCHHH---H-TSTTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred EEEEEEeC--CcHHHHHHHHHHHhcCCceEEEEecC-ccccchhhc---c-CCCceEEEECCCCCHHHHHHHHcCCCEEE
Confidence 56898883 4555556665554 347899999999 66 443222 1 12568999998854 2333346789999
Q ss_pred EcCCCCCccH--HHHHHHHHhh
Q 042616 118 IDCNIDIDGH--KNVFRAAKES 137 (220)
Q Consensus 118 iD~~k~~~~y--~~~l~~l~~~ 137 (220)
.-+.. .+. ...++.+.+.
T Consensus 79 ~~ag~--~n~~~~~~~~~~~~~ 98 (221)
T 3r6d_A 79 VGAME--SGSDMASIVKALSRX 98 (221)
T ss_dssp ESCCC--CHHHHHHHHHHHHHT
T ss_pred EcCCC--CChhHHHHHHHHHhc
Confidence 88876 333 3344444443
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=89.81 E-value=0.65 Score=40.33 Aligned_cols=97 Identities=13% Similarity=0.085 Sum_probs=53.9
Q ss_pred hhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEE-EEEeCCchh---HHHHHHHHhcccCCcEEEEEcch--hhhhhhc
Q 042616 37 AGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRV-VCILSGVIG---DIDASKKSLGRYANCIEFVKGDA--QKLLMGD 109 (220)
Q Consensus 37 ~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV-~tIE~d~~~---~~~~Ar~~l~g~~~~Ve~v~gda--~~~L~~~ 109 (220)
...+.++||-+|+ |++|..++.||+++ +.++ ++++.+ +. ..+.+++. |. +. ++..+- .+.+..+
T Consensus 164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~---Ga~vi~~~~~~-~~~~~~~~~~~~l--Ga-~~--vi~~~~~~~~~~~~~ 234 (357)
T 1zsy_A 164 QLQPGDSVIQNASNSGVGQAVIQIAAAL---GLRTINVVRDR-PDIQKLSDRLKSL--GA-EH--VITEEELRRPEMKNF 234 (357)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHH---TCEEEEEECCC-SCHHHHHHHHHHT--TC-SE--EEEHHHHHSGGGGGT
T ss_pred ccCCCCEEEEeCCcCHHHHHHHHHHHHc---CCEEEEEecCc-cchHHHHHHHHhc--CC-cE--EEecCcchHHHHHHH
Confidence 3456789999996 88999999999875 5555 455555 43 34455432 32 22 222211 0112222
Q ss_pred -C--CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 110 -Y--RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 110 -~--~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
. ..+|+|| |+-- .. . +..+.+. |++ ||.++.-.
T Consensus 235 ~~~~~~~Dvvi-d~~g--~~--~-~~~~~~~--l~~-~G~iv~~G 270 (357)
T 1zsy_A 235 FKDMPQPRLAL-NCVG--GK--S-STELLRQ--LAR-GGTMVTYG 270 (357)
T ss_dssp TSSSCCCSEEE-ESSC--HH--H-HHHHHTT--SCT-TCEEEECC
T ss_pred HhCCCCceEEE-ECCC--cH--H-HHHHHHh--hCC-CCEEEEEe
Confidence 1 2589876 5544 22 2 2345666 765 77777654
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.74 E-value=0.96 Score=37.46 Aligned_cols=80 Identities=3% Similarity=0.003 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhh---cC
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMG---DY 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~---~~ 110 (220)
..+.||-.|+ +|.....++..+.+.+.+|+.++.+ ++..+...+.++....+++++..|..+. +.. ..
T Consensus 30 ~~k~vlITGa--sggIG~~la~~L~~~G~~V~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 106 (272)
T 1yb1_A 30 TGEIVLITGA--GHGIGRLTAYEFAKLKSKLVLWDIN-KHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI 106 (272)
T ss_dssp TTCEEEEETT--TSHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECC--CchHHHHHHHHHHHCCCEEEEEEcC-HHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 4578998884 4555666666665558899999999 7777666665553335789999886432 111 13
Q ss_pred CCccEEEEcCCC
Q 042616 111 RGADFVLIDCNI 122 (220)
Q Consensus 111 ~~~D~VfiD~~k 122 (220)
+++|.|+-.+..
T Consensus 107 g~iD~li~~Ag~ 118 (272)
T 1yb1_A 107 GDVSILVNNAGV 118 (272)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCcEEEECCCc
Confidence 579999987754
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=89.74 E-value=8.3 Score=33.09 Aligned_cols=73 Identities=11% Similarity=0.023 Sum_probs=43.1
Q ss_pred EEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccC-CcEEEEEc--chhhhhhhcCCCccEEEE
Q 042616 43 LIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYA-NCIEFVKG--DAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 43 ~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~-~~Ve~v~g--da~~~L~~~~~~~D~Vfi 118 (220)
+|.-||+ |.+|+..+.+. +.......|+.+|.+ + ....+....+... .+++...+ |..+.+ ...|+||+
T Consensus 2 KI~IiGa~G~VG~~la~~L-~~~~~~~ev~L~Di~-~-~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~----~~aDvVvi 74 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLL-KNSPLVSRLTLYDIA-H-TPGVAADLSHIETRATVKGYLGPEQLPDCL----KGCDVVVI 74 (314)
T ss_dssp EEEEETTTSTTHHHHHHHH-HTCTTCSEEEEEESS-S-HHHHHHHHTTSSSSCEEEEEESGGGHHHHH----TTCSEEEE
T ss_pred EEEEECCCChHHHHHHHHH-HhCCCCcEEEEEeCC-c-cHHHHHHHhccCcCceEEEecCCCCHHHHh----CCCCEEEE
Confidence 5888997 88888755443 222112589999999 6 3233333222221 24555544 445444 45799999
Q ss_pred cCCC
Q 042616 119 DCNI 122 (220)
Q Consensus 119 D~~k 122 (220)
-+..
T Consensus 75 ~ag~ 78 (314)
T 1mld_A 75 PAGV 78 (314)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 7754
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.70 E-value=1.3 Score=37.42 Aligned_cols=81 Identities=10% Similarity=0.118 Sum_probs=53.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCC---cEEEEEcchhhh------hhhc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYAN---CIEFVKGDAQKL------LMGD 109 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~---~Ve~v~gda~~~------L~~~ 109 (220)
.+.+.+|-.|. +|.....+++.+...|.+|+.++.+ ++.++...+.+..... ++.++..|..+. +...
T Consensus 24 l~~k~vlVTGa--s~gIG~aia~~L~~~G~~V~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 100 (297)
T 1xhl_A 24 FSGKSVIITGS--SNGIGRSAAVIFAKEGAQVTITGRN-EDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTT 100 (297)
T ss_dssp CTTCEEEETTC--SSHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCC--CcHHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHH
Confidence 35678888774 3445556666555558899999999 8777666555542223 788998886432 1111
Q ss_pred ---CCCccEEEEcCCC
Q 042616 110 ---YRGADFVLIDCNI 122 (220)
Q Consensus 110 ---~~~~D~VfiD~~k 122 (220)
.+++|.+|..+..
T Consensus 101 ~~~~g~iD~lvnnAG~ 116 (297)
T 1xhl_A 101 LAKFGKIDILVNNAGA 116 (297)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHhcCCCCEEEECCCc
Confidence 2579999987753
|
| >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=89.63 E-value=0.3 Score=40.10 Aligned_cols=29 Identities=24% Similarity=0.142 Sum_probs=21.4
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCCchh
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSGVIG 79 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~ 79 (220)
|++|-+|+. ||.++...+.+|.-||.| +.
T Consensus 12 gGvGKTt~a~~LA~~la~~g~~VlliD~D-~~ 42 (263)
T 1hyq_A 12 GGTGKTTITANLGVALAQLGHDVTIVDAD-IT 42 (263)
T ss_dssp SCSCHHHHHHHHHHHHHHTTCCEEEEECC-CS
T ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEECC-CC
Confidence 557877765 676666557799999999 64
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=89.61 E-value=1.8 Score=36.09 Aligned_cols=93 Identities=10% Similarity=0.040 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCchHHHHHH-HHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 40 NAQLIVMACSSIAVSRTLA-LVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~-LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
+..+|.-||+|..|..-.. |+.+ .. +-+|+.+|++ ++..+.+++. +..+ ....+..+.+ ...|+||+
T Consensus 5 ~~~~I~iIG~G~mG~~~a~~l~~~-g~-~~~V~~~d~~-~~~~~~~~~~--g~~~---~~~~~~~~~~----~~aDvVil 72 (290)
T 3b1f_A 5 EEKTIYIAGLGLIGASLALGIKRD-HP-HYKIVGYNRS-DRSRDIALER--GIVD---EATADFKVFA----ALADVIIL 72 (290)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHH-CT-TSEEEEECSS-HHHHHHHHHT--TSCS---EEESCTTTTG----GGCSEEEE
T ss_pred ccceEEEEeeCHHHHHHHHHHHhC-CC-CcEEEEEcCC-HHHHHHHHHc--CCcc---cccCCHHHhh----cCCCEEEE
Confidence 4567988998755554322 3322 11 3589999999 8877665541 3211 1233433433 35799999
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
-.+. ....++++.+.+.+ + ++|.+|+
T Consensus 73 avp~--~~~~~v~~~l~~~~-l-~~~~ivi 98 (290)
T 3b1f_A 73 AVPI--KKTIDFIKILADLD-L-KEDVIIT 98 (290)
T ss_dssp CSCH--HHHHHHHHHHHTSC-C-CTTCEEE
T ss_pred cCCH--HHHHHHHHHHHhcC-C-CCCCEEE
Confidence 8877 66677777776531 2 3466555
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=89.56 E-value=0.88 Score=37.43 Aligned_cols=80 Identities=11% Similarity=0.190 Sum_probs=55.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhhc---
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMGD--- 109 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~~--- 109 (220)
.+.+.+|-.|. +|.....+|+.+.+.|.+|+.++.+ ++.++.+.+.++....++.++..|..+. +...
T Consensus 4 l~~k~vlVTGa--s~gIG~aia~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (257)
T 3imf_A 4 MKEKVVIITGG--SSGMGKGMATRFAKEGARVVITGRT-KEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEK 80 (257)
T ss_dssp TTTCEEEETTT--TSHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECC--CCHHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35678888874 3444555555555558899999999 8888877777764446799999886432 1111
Q ss_pred CCCccEEEEcCC
Q 042616 110 YRGADFVLIDCN 121 (220)
Q Consensus 110 ~~~~D~VfiD~~ 121 (220)
.+++|.++..+.
T Consensus 81 ~g~id~lv~nAg 92 (257)
T 3imf_A 81 FGRIDILINNAA 92 (257)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 257999998765
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=89.52 E-value=1 Score=38.52 Aligned_cols=97 Identities=15% Similarity=0.029 Sum_probs=56.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH-h--cc-cCCcEEE----EEcchhhhhhhcCCCc
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKS-L--GR-YANCIEF----VKGDAQKLLMGDYRGA 113 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~-l--~g-~~~~Ve~----v~gda~~~L~~~~~~~ 113 (220)
.+|.-||+|..|..-. ..+.+.+-.|+-++.+ + . +..++. + .. ....+.+ ...+..+ ....+
T Consensus 3 mkI~IiGaGaiG~~~a---~~L~~~g~~V~~~~r~-~-~-~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~----~~~~~ 72 (320)
T 3i83_A 3 LNILVIGTGAIGSFYG---ALLAKTGHCVSVVSRS-D-Y-ETVKAKGIRIRSATLGDYTFRPAAVVRSAAE----LETKP 72 (320)
T ss_dssp CEEEEESCCHHHHHHH---HHHHHTTCEEEEECST-T-H-HHHHHHCEEEEETTTCCEEECCSCEESCGGG----CSSCC
T ss_pred CEEEEECcCHHHHHHH---HHHHhCCCeEEEEeCC-h-H-HHHHhCCcEEeecCCCcEEEeeeeeECCHHH----cCCCC
Confidence 4788899876665322 2222225589999998 6 2 444432 2 12 2223333 1223222 22479
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEE-EecCC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIV-GYNAL 153 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv-~dNv~ 153 (220)
|+||+-.+. ....+.++.+.+. +.+ +.+|| .-|-+
T Consensus 73 DlVilavK~--~~~~~~l~~l~~~--l~~-~t~Iv~~~nGi 108 (320)
T 3i83_A 73 DCTLLCIKV--VEGADRVGLLRDA--VAP-DTGIVLISNGI 108 (320)
T ss_dssp SEEEECCCC--CTTCCHHHHHTTS--CCT-TCEEEEECSSS
T ss_pred CEEEEecCC--CChHHHHHHHHhh--cCC-CCEEEEeCCCC
Confidence 999998877 6677889999988 765 55544 44444
|
| >3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=89.51 E-value=1.9 Score=31.00 Aligned_cols=69 Identities=12% Similarity=0.059 Sum_probs=48.4
Q ss_pred CcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCC--ccHHHHHHHHHhh
Q 042616 67 GGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDI--DGHKNVFRAAKES 137 (220)
Q Consensus 67 ~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~--~~y~~~l~~l~~~ 137 (220)
..+|.-||.+ +...+..+..++...-.+. ...++.+.+..+ ..++|+||+|..... .+-.+.++.+...
T Consensus 6 ~~~ilivdd~-~~~~~~l~~~L~~~g~~v~-~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~ 77 (136)
T 3kto_A 6 HPIIYLVDHQ-KDARAALSKLLSPLDVTIQ-CFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKR 77 (136)
T ss_dssp -CEEEEECSC-HHHHHHHHHHHTTSSSEEE-EESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHT
T ss_pred CCeEEEEcCC-HHHHHHHHHHHHHCCcEEE-EeCCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhC
Confidence 3589999999 8888888888873222344 566777777544 357999999988732 3346677777765
|
| >3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} | Back alignment and structure |
|---|
Probab=89.47 E-value=3.5 Score=30.14 Aligned_cols=68 Identities=10% Similarity=0.064 Sum_probs=47.3
Q ss_pred CcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 67 GGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 67 ~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
.-+|.-||.+ +...+..+..++. .-.|. ...+..+.+..+ ..+||+|++|......+..+.++.+...
T Consensus 4 ~~~ILivdd~-~~~~~~l~~~L~~-~~~v~-~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 73 (151)
T 3kcn_A 4 NERILLVDDD-YSLLNTLKRNLSF-DFEVT-TCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLI 73 (151)
T ss_dssp CCEEEEECSC-HHHHHHHHHHHTT-TSEEE-EESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEeCC-HHHHHHHHHHhcc-CceEE-EeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhc
Confidence 3589999999 8888888887762 12333 455666665433 3458999999886445667788888876
|
| >3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} | Back alignment and structure |
|---|
Probab=89.47 E-value=2.7 Score=30.77 Aligned_cols=70 Identities=13% Similarity=0.058 Sum_probs=48.6
Q ss_pred CcEEEEEeCCchhHHHHHHHHhcc-cCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 67 GGRVVCILSGVIGDIDASKKSLGR-YANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 67 ~grV~tIE~d~~~~~~~Ar~~l~g-~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
.-+|.-||.+ +...+..+..++. ..-.+.....+..+.+..+ ...+|+|++|......+..+.++.+...
T Consensus 5 ~~~ILivdd~-~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 76 (153)
T 3cz5_A 5 TARIMLVDDH-PIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQW 76 (153)
T ss_dssp CEEEEEECSC-HHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHH
T ss_pred ccEEEEECCc-HHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHh
Confidence 4588999999 8888888888864 2222333566777666433 3579999999876334567778888776
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=89.39 E-value=1.5 Score=37.66 Aligned_cols=94 Identities=14% Similarity=0.175 Sum_probs=56.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH-hc-ccCCcEEE-----EEcchhhhhhhcCCC
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKS-LG-RYANCIEF-----VKGDAQKLLMGDYRG 112 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~-l~-g~~~~Ve~-----v~gda~~~L~~~~~~ 112 (220)
...+|.-||+|..|..- |..+...+-.|+.+ .+ ++.++..++. +. .. ...++ ...+..+ ...
T Consensus 18 ~~~kI~IiGaGa~G~~~---a~~L~~~G~~V~l~-~~-~~~~~~i~~~g~~~~~-~~~~~~~~~~~~~~~~~-----~~~ 86 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYY---GGMLARAGHEVILI-AR-PQHVQAIEATGLRLET-QSFDEQVKVSASSDPSA-----VQG 86 (318)
T ss_dssp --CEEEEESCSHHHHHH---HHHHHHTTCEEEEE-CC-HHHHHHHHHHCEEEEC-SSCEEEECCEEESCGGG-----GTT
T ss_pred cCCcEEEECcCHHHHHH---HHHHHHCCCeEEEE-Ec-HhHHHHHHhCCeEEEc-CCCcEEEeeeeeCCHHH-----cCC
Confidence 45789999987666432 22222225578888 88 8877776653 11 11 11111 1122222 257
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|+||+-.+. ....+.++.+.+. +.+ +.+||.
T Consensus 87 ~D~vilavk~--~~~~~~l~~l~~~--l~~-~~~iv~ 118 (318)
T 3hwr_A 87 ADLVLFCVKS--TDTQSAALAMKPA--LAK-SALVLS 118 (318)
T ss_dssp CSEEEECCCG--GGHHHHHHHHTTT--SCT-TCEEEE
T ss_pred CCEEEEEccc--ccHHHHHHHHHHh--cCC-CCEEEE
Confidence 8999998877 6778899999988 755 666553
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=89.39 E-value=3.8 Score=35.42 Aligned_cols=85 Identities=14% Similarity=-0.022 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCC-CCcEEEE-EeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQ-TGGRVVC-ILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~-~~grV~t-IE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
+..+|.-||+|..|... ++.++.. .+-+|++ .|++ ++.++...+.+ + +... .|..+++.. ..+|+|+
T Consensus 26 ~~~rigiIG~G~~g~~~--~~~~l~~~~~~~l~av~d~~-~~~~~~~a~~~-g----~~~~-~~~~~ll~~--~~~D~V~ 94 (350)
T 3rc1_A 26 NPIRVGVIGCADIAWRR--ALPALEAEPLTEVTAIASRR-WDRAKRFTERF-G----GEPV-EGYPALLER--DDVDAVY 94 (350)
T ss_dssp CCEEEEEESCCHHHHHT--HHHHHHHCTTEEEEEEEESS-HHHHHHHHHHH-C----SEEE-ESHHHHHTC--TTCSEEE
T ss_pred CceEEEEEcCcHHHHHH--HHHHHHhCCCeEEEEEEcCC-HHHHHHHHHHc-C----CCCc-CCHHHHhcC--CCCCEEE
Confidence 45678889987566421 2222221 1567775 5898 77665444433 2 2333 788887742 5789999
Q ss_pred EcCCCCCccHHHHHHHHHhh
Q 042616 118 IDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~ 137 (220)
|-.+. ....++...+.+.
T Consensus 95 i~tp~--~~h~~~~~~al~a 112 (350)
T 3rc1_A 95 VPLPA--VLHAEWIDRALRA 112 (350)
T ss_dssp ECCCG--GGHHHHHHHHHHT
T ss_pred ECCCc--HHHHHHHHHHHHC
Confidence 97776 6666666666554
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=89.36 E-value=3.3 Score=35.38 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=50.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEE-EeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVC-ILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~t-IE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
.+..+|.-||+|..|..-+..... ...+.++++ +|++ ++.++.+.+.+ + +.-+..|..+.+.. ..+|+|+
T Consensus 6 ~~~~~v~iiG~G~ig~~~~~~l~~-~~~~~~~vav~d~~-~~~~~~~a~~~-g----~~~~~~~~~~~l~~--~~~D~V~ 76 (346)
T 3cea_A 6 RKPLRAAIIGLGRLGERHARHLVN-KIQGVKLVAACALD-SNQLEWAKNEL-G----VETTYTNYKDMIDT--ENIDAIF 76 (346)
T ss_dssp CCCEEEEEECCSTTHHHHHHHHHH-TCSSEEEEEEECSC-HHHHHHHHHTT-C----CSEEESCHHHHHTT--SCCSEEE
T ss_pred CCcceEEEEcCCHHHHHHHHHHHh-cCCCcEEEEEecCC-HHHHHHHHHHh-C----CCcccCCHHHHhcC--CCCCEEE
Confidence 455688889998677543322220 112567665 6999 77765443332 2 11234677776632 4689999
Q ss_pred EcCCCCCccHHHHHHHHHh
Q 042616 118 IDCNIDIDGHKNVFRAAKE 136 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~ 136 (220)
+-.+. ....++...+.+
T Consensus 77 i~tp~--~~h~~~~~~al~ 93 (346)
T 3cea_A 77 IVAPT--PFHPEMTIYAMN 93 (346)
T ss_dssp ECSCG--GGHHHHHHHHHH
T ss_pred EeCCh--HhHHHHHHHHHH
Confidence 88776 555555555544
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=89.32 E-value=4.2 Score=35.65 Aligned_cols=78 Identities=12% Similarity=0.097 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCchHHHHHH-HHHHcCCCCcEEEEEeCCch-------------------hHHHHHHHHhccc--CCcEEE
Q 042616 40 NAQLIVMACSSIAVSRTLA-LVAAARQTGGRVVCILSGVI-------------------GDIDASKKSLGRY--ANCIEF 97 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~-LA~A~~~~~grV~tIE~d~~-------------------~~~~~Ar~~l~g~--~~~Ve~ 97 (220)
+..+|+-+|+|+.|...+. |+.+ . -|+++-+|.| . .+++.+++.+..+ .-+|+.
T Consensus 117 ~~~~VlvvG~GglGs~va~~La~a-G--vg~i~lvD~D-~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~ 192 (353)
T 3h5n_A 117 KNAKVVILGCGGIGNHVSVILATS-G--IGEIILIDND-QIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSE 192 (353)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHH-T--CSEEEEEECC-BCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEE
T ss_pred hCCeEEEECCCHHHHHHHHHHHhC-C--CCeEEEECCC-cCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEE
Confidence 4578999999888876554 5544 2 4899999988 4 3566777777622 234666
Q ss_pred EEcchhhh--hhhcCCCccEEEEcCCC
Q 042616 98 VKGDAQKL--LMGDYRGADFVLIDCNI 122 (220)
Q Consensus 98 v~gda~~~--L~~~~~~~D~VfiD~~k 122 (220)
+..+..+. +.. ...+|+|+.-.+.
T Consensus 193 ~~~~i~~~~~~~~-~~~~DlVvd~~Dn 218 (353)
T 3h5n_A 193 IALNINDYTDLHK-VPEADIWVVSADH 218 (353)
T ss_dssp EECCCCSGGGGGG-SCCCSEEEECCCC
T ss_pred eecccCchhhhhH-hccCCEEEEecCC
Confidence 66544221 333 5689997754443
|
| >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* | Back alignment and structure |
|---|
Probab=89.32 E-value=1.7 Score=35.74 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=28.1
Q ss_pred CCEEEEEcC-CchHHHHHH--HHHHcCCCCcEEEEEeCCchhH
Q 042616 41 AQLIVMACS-SIAVSRTLA--LVAAARQTGGRVVCILSGVIGD 80 (220)
Q Consensus 41 a~~ILEIGt-g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~ 80 (220)
++.|.-.++ |++|-+|+. ||.++...|.+|.-||.| ++.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D-~~~ 59 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDAD-FLG 59 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECC-SSC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC-CCC
Confidence 455555554 668988775 777766657799999999 775
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=89.27 E-value=0.67 Score=37.66 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCC-CCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hhhc-------
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQ-TGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LMGD------- 109 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~-~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~------- 109 (220)
+.++||-.|+ +|.....+++.+.+ .+.+|+.++.+ ++..+...+.+.....+++++..|..+. +..+
T Consensus 3 ~~k~vlITGa--sggIG~~~a~~L~~~~g~~V~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (276)
T 1wma_A 3 GIHVALVTGG--NKGIGLAIVRDLCRLFSGDVVLTARD-VTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKE 79 (276)
T ss_dssp CCCEEEESSC--SSHHHHHHHHHHHHHSSSEEEEEESS-HHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC--CcHHHHHHHHHHHHhcCCeEEEEeCC-hHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHh
Confidence 4578888774 46666666666655 58899999999 8777766666653235688888886532 1111
Q ss_pred CCCccEEEEcCCC
Q 042616 110 YRGADFVLIDCNI 122 (220)
Q Consensus 110 ~~~~D~VfiD~~k 122 (220)
.+++|.||.-+..
T Consensus 80 ~g~id~li~~Ag~ 92 (276)
T 1wma_A 80 YGGLDVLVNNAGI 92 (276)
T ss_dssp HSSEEEEEECCCC
T ss_pred cCCCCEEEECCcc
Confidence 2479999977653
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.26 E-value=2.1 Score=35.55 Aligned_cols=80 Identities=11% Similarity=0.162 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hhhc-------C
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LMGD-------Y 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~-------~ 110 (220)
..+.||-.|+ +|..+..++..+.+.+.+|+.++.+ ++..+...+.++....++.++.+|..+. +..+ .
T Consensus 43 ~~k~vlITGa--sggIG~~la~~L~~~G~~V~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 119 (285)
T 2c07_A 43 ENKVALVTGA--GRGIGREIAKMLAKSVSHVICISRT-QKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH 119 (285)
T ss_dssp SSCEEEEEST--TSHHHHHHHHHHTTTSSEEEEEESS-HHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECC--CcHHHHHHHHHHHHcCCEEEEEcCC-HHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhc
Confidence 3478898884 4666777777777668899999988 7777666555553335688888886432 1111 3
Q ss_pred CCccEEEEcCCC
Q 042616 111 RGADFVLIDCNI 122 (220)
Q Consensus 111 ~~~D~VfiD~~k 122 (220)
+++|.||..+..
T Consensus 120 ~~id~li~~Ag~ 131 (285)
T 2c07_A 120 KNVDILVNNAGI 131 (285)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 579999987654
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.26 E-value=1.4 Score=35.67 Aligned_cols=80 Identities=10% Similarity=0.109 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhh---cC
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMG---DY 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~---~~ 110 (220)
+.+.+|-.|+ +|.....+++.+.+.+.+|+.++.+ ++..+...+.++....+++++..|..+. +.. ..
T Consensus 4 ~~k~vlITGa--s~gIG~~~a~~l~~~G~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 4 NEKVALVTGA--SRGIGFEVAHALASKGATVVGTATS-QASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTCEEEESSC--SSHHHHHHHHHHHHTTCEEEEEESS-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECC--CChHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4578888884 3444555555555558899999999 8877777666653335789999886432 111 13
Q ss_pred CCccEEEEcCCC
Q 042616 111 RGADFVLIDCNI 122 (220)
Q Consensus 111 ~~~D~VfiD~~k 122 (220)
+++|.++..+..
T Consensus 81 ~~id~li~~Ag~ 92 (247)
T 3lyl_A 81 LAIDILVNNAGI 92 (247)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 579999987754
|
| >2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.23 E-value=2.9 Score=30.01 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=46.7
Q ss_pred CcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 67 GGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 67 ~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
.-+|.-||.+ +...+..+..++...-.+. ...+..+.+..+ ...+|+|++|. ....+..+.++.+...
T Consensus 4 ~~~iLivdd~-~~~~~~l~~~L~~~g~~v~-~~~~~~~a~~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~ 72 (142)
T 2qxy_A 4 TPTVMVVDES-RITFLAVKNALEKDGFNVI-WAKNEQEAFTFLRREKIDLVFVDV-FEGEESLNLIRRIREE 72 (142)
T ss_dssp CCEEEEECSC-HHHHHHHHHHHGGGTCEEE-EESSHHHHHHHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHH
T ss_pred CCeEEEEeCC-HHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHhccCCCEEEEeC-CCCCcHHHHHHHHHHH
Confidence 4589999999 8888888888873222444 556666666443 35799999998 6223445667777765
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=89.21 E-value=1.3 Score=36.88 Aligned_cols=80 Identities=10% Similarity=0.059 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhhc---C
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMGD---Y 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~~---~ 110 (220)
..+.+|-.|+ +|-....+|+.+.+.|.+|+.++.+ ++.++.+.+.+.....++.++..|..+. +... .
T Consensus 23 ~~k~~lVTGa--s~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (279)
T 3sju_A 23 RPQTAFVTGV--SSGIGLAVARTLAARGIAVYGCARD-AKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERF 99 (279)
T ss_dssp --CEEEEEST--TSHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC--CCHHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 5688998885 3334445555554458899999999 8887777766653345789999886432 1111 3
Q ss_pred CCccEEEEcCCC
Q 042616 111 RGADFVLIDCNI 122 (220)
Q Consensus 111 ~~~D~VfiD~~k 122 (220)
+++|.++..+..
T Consensus 100 g~id~lv~nAg~ 111 (279)
T 3sju_A 100 GPIGILVNSAGR 111 (279)
T ss_dssp CSCCEEEECCCC
T ss_pred CCCcEEEECCCC
Confidence 589999987754
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=89.17 E-value=1.7 Score=39.55 Aligned_cols=106 Identities=22% Similarity=0.214 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-----cc---------CCcEEEEEcchhh
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-----RY---------ANCIEFVKGDAQK 104 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-----g~---------~~~Ve~v~gda~~ 104 (220)
+..-+|--||+|..| +.||..+.+.|-+|+++|.| ++.++..++... ++ ..++++ ..|..+
T Consensus 6 ~~~~~~~vIGlG~vG---~~~A~~La~~G~~V~~~D~~-~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~-ttd~~e 80 (446)
T 4a7p_A 6 HGSVRIAMIGTGYVG---LVSGACFSDFGHEVVCVDKD-ARKIELLHQNVMPIYEPGLDALVASNVKAGRLSF-TTDLAE 80 (446)
T ss_dssp -CCCEEEEECCSHHH---HHHHHHHHHTTCEEEEECSC-STTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHH
T ss_pred CCceEEEEEcCCHHH---HHHHHHHHHCCCEEEEEeCC-HHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEE-ECCHHH
Confidence 456678888865444 44444444436689999999 888876655311 11 123443 355555
Q ss_pred hhhhcCCCccEEEEcCCCCCc---------cHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 105 LLMGDYRGADFVLIDCNIDID---------GHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~~k~~~---------~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
.+ ...|+||+--+.+.. .....++.+.+. ++ +|.+||......+|
T Consensus 81 a~----~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~--l~-~g~iVV~~STv~pg 134 (446)
T 4a7p_A 81 GV----KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAEN--LT-KPSVIVTKSTVPVG 134 (446)
T ss_dssp HH----TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHS--CC-SCCEEEECSCCCTT
T ss_pred HH----hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHh--cC-CCCEEEEeCCCCch
Confidence 54 357999987433111 146667788887 75 48888877666666
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=89.15 E-value=1.4 Score=36.17 Aligned_cols=80 Identities=8% Similarity=0.020 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hhhc-------C
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LMGD-------Y 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~-------~ 110 (220)
+.+.+|-.|. +|.....++..+.+.+.+|+.++.+ ++.++...+.+.....++.++..|..+. +..+ .
T Consensus 8 ~~k~vlVTGa--s~giG~~ia~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (260)
T 2ae2_A 8 EGCTALVTGG--SRGIGYGIVEELASLGASVYTCSRN-QKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHF 84 (260)
T ss_dssp TTCEEEEESC--SSHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECC--CcHHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4578998884 3444555555555457899999999 7777665555543235688888886432 1111 2
Q ss_pred -CCccEEEEcCCC
Q 042616 111 -RGADFVLIDCNI 122 (220)
Q Consensus 111 -~~~D~VfiD~~k 122 (220)
+.+|.++-.+..
T Consensus 85 ~g~id~lv~~Ag~ 97 (260)
T 2ae2_A 85 HGKLNILVNNAGI 97 (260)
T ss_dssp TTCCCEEEECCCC
T ss_pred CCCCCEEEECCCC
Confidence 679999987753
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.13 E-value=1.4 Score=36.31 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=53.9
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhhc--
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMGD-- 109 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~~-- 109 (220)
..+.+.+|-.|+ ++.....+|..+.+.+.+|+.++.+ ++.++...+.+.....++.++..|..+. +...
T Consensus 8 ~l~~k~vlVTGa--s~gIG~aia~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (264)
T 3ucx_A 8 LLTDKVVVISGV--GPALGTTLARRCAEQGADLVLAART-VERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMK 84 (264)
T ss_dssp TTTTCEEEEESC--CTTHHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcCCcEEEEECC--CcHHHHHHHHHHHHCcCEEEEEeCC-HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 346688998885 2333444444444448899999999 8888777776653346789998886432 1111
Q ss_pred -CCCccEEEEcCC
Q 042616 110 -YRGADFVLIDCN 121 (220)
Q Consensus 110 -~~~~D~VfiD~~ 121 (220)
.+++|.++..+.
T Consensus 85 ~~g~id~lv~nAg 97 (264)
T 3ucx_A 85 AYGRVDVVINNAF 97 (264)
T ss_dssp HTSCCSEEEECCC
T ss_pred HcCCCcEEEECCC
Confidence 468999998773
|
| >3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A* | Back alignment and structure |
|---|
Probab=89.12 E-value=2.6 Score=29.07 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=45.3
Q ss_pred EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 69 RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 69 rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
+|.-+|.+ +...+..+..++...-.+. ...++.+.+..+ ...+|+|++|......+-.+.++.+...
T Consensus 3 ~ilivdd~-~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~ 70 (116)
T 3a10_A 3 RILVVDDE-PNIRELLKEELQEEGYEID-TAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKK 70 (116)
T ss_dssp EEEEECSC-HHHHHHHHHHHHHTTCEEE-EESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHH
T ss_pred EEEEEeCC-HHHHHHHHHHHHHCCCEEE-EeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHcc
Confidence 67888999 8888888888863222344 455666655433 2578999999876334556777777765
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=89.09 E-value=4 Score=33.26 Aligned_cols=80 Identities=10% Similarity=0.028 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCchHH--HHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccC-CcEEEEEcchhhh------hhhc-
Q 042616 40 NAQLIVMACSSIAVS--RTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYA-NCIEFVKGDAQKL------LMGD- 109 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~--sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~-~~Ve~v~gda~~~------L~~~- 109 (220)
+.+.+|-.|++ |. ....+|+.+.+.+.+|+.++.+ +...+.+.+..+... .++.++..|..+. +...
T Consensus 6 ~~k~vlVTGas--g~~GIG~~ia~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 6 EGRNIVVMGVA--NKRSIAWGIARSLHEAGARLIFTYAG-ERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp TTCEEEEECCC--STTSHHHHHHHHHHHTTCEEEEEESS-GGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCC--CCCcHHHHHHHHHHHCCCEEEEecCc-hHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHH
Confidence 46789988842 22 2334444444448899999998 766666666554322 3688888886431 1111
Q ss_pred --CCCccEEEEcCCC
Q 042616 110 --YRGADFVLIDCNI 122 (220)
Q Consensus 110 --~~~~D~VfiD~~k 122 (220)
.+.+|.++..+..
T Consensus 83 ~~~g~id~li~~Ag~ 97 (266)
T 3oig_A 83 EQVGVIHGIAHCIAF 97 (266)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHhCCeeEEEEcccc
Confidence 2579999987653
|
| >3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=89.08 E-value=2.8 Score=30.15 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=47.5
Q ss_pred cEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc---CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 68 GRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD---YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 68 grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~---~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
-+|.-||.+ +...+..+..++.....+. ...+..+.+..+ ...+|+||+|......+-.+.++.+...
T Consensus 4 ~~ilivdd~-~~~~~~l~~~l~~~g~~v~-~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 74 (143)
T 3jte_A 4 AKILVIDDE-STILQNIKFLLEIDGNEVL-TASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKI 74 (143)
T ss_dssp CEEEEECSC-HHHHHHHHHHHHHTTCEEE-EESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHH
T ss_pred CEEEEEcCC-HHHHHHHHHHHHhCCceEE-EeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHh
Confidence 478999999 8888888888873222333 455666555333 3579999999877435567788888876
|
| >3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=89.06 E-value=2 Score=31.43 Aligned_cols=70 Identities=16% Similarity=-0.052 Sum_probs=49.4
Q ss_pred CcEEEEEeCCchhHHHHHHHHhcccCCc-EEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 67 GGRVVCILSGVIGDIDASKKSLGRYANC-IEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 67 ~grV~tIE~d~~~~~~~Ar~~l~g~~~~-Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
..+|.-||.+ +...+..+..++..... +-....+..+.+..+ ..++|+|++|......+..+.++.+...
T Consensus 15 ~~~iLivdd~-~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 86 (152)
T 3eul_A 15 KVRVVVGDDH-PLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSY 86 (152)
T ss_dssp CEEEEEECSS-HHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHT
T ss_pred eEEEEEEcCC-HHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 5789999999 88888888888732222 223466766665433 2579999999876445667888888875
|
| >3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri} | Back alignment and structure |
|---|
Probab=89.00 E-value=2.9 Score=29.53 Aligned_cols=69 Identities=12% Similarity=0.080 Sum_probs=48.1
Q ss_pred CcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 67 GGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 67 ~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
.-+|.-||.+ +...+..+..++...-.+. ...++.+.+..+ ..++|+|++|......+-.+.++.+...
T Consensus 6 ~~~ilivdd~-~~~~~~l~~~L~~~g~~v~-~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 75 (132)
T 3lte_A 6 SKRILVVDDD-QAMAAAIERVLKRDHWQVE-IAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQN 75 (132)
T ss_dssp -CEEEEECSC-HHHHHHHHHHHHHTTCEEE-EESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTT
T ss_pred CccEEEEECC-HHHHHHHHHHHHHCCcEEE-EeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 4689999999 8888888888873212343 556666665433 3679999999876335567788888765
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=88.88 E-value=2.6 Score=38.80 Aligned_cols=106 Identities=10% Similarity=-0.004 Sum_probs=62.5
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCC-Cc-EEEEEeCCchh----HHHHHHHHh------c-cc---------CCcE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQT-GG-RVVCILSGVIG----DIDASKKSL------G-RY---------ANCI 95 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~-~g-rV~tIE~d~~~----~~~~Ar~~l------~-g~---------~~~V 95 (220)
..+-.+|--||+|..|..... .+... |- .|+++|.+ ++ .++..++.. + ++ ..++
T Consensus 15 ~~~~mkIaVIGlG~mG~~lA~---~la~~~G~~~V~~~D~~-~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l 90 (478)
T 3g79_A 15 RGPIKKIGVLGMGYVGIPAAV---LFADAPCFEKVLGFQRN-SKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKF 90 (478)
T ss_dssp HCSCCEEEEECCSTTHHHHHH---HHHHSTTCCEEEEECCC-CTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCE
T ss_pred cCCCCEEEEECcCHHHHHHHH---HHHHhCCCCeEEEEECC-hhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCe
Confidence 455678988998766654333 22222 44 79999999 88 666554411 1 11 2344
Q ss_pred EEEEcchhhhhhhcCCCccEEEEcCCCCC-------cc---HHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 96 EFVKGDAQKLLMGDYRGADFVLIDCNIDI-------DG---HKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 96 e~v~gda~~~L~~~~~~~D~VfiD~~k~~-------~~---y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
.+ ..| .+.+ ...|+||+--+.+. .+ .....+.+.+. +++ |.+||......+|
T Consensus 91 ~~-ttd-~ea~----~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~--l~~-g~iVV~~STv~pg 152 (478)
T 3g79_A 91 EC-TPD-FSRI----SELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKY--LKP-GMLVVLESTITPG 152 (478)
T ss_dssp EE-ESC-GGGG----GGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHH--CCT-TCEEEECSCCCTT
T ss_pred EE-eCc-HHHH----hcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhh--cCC-CcEEEEeCCCChH
Confidence 44 233 3333 35799998765411 11 24456777787 754 8888876666665
|
| >4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A | Back alignment and structure |
|---|
Probab=88.86 E-value=3.7 Score=29.97 Aligned_cols=69 Identities=12% Similarity=0.039 Sum_probs=48.3
Q ss_pred cEEEEEeCCchhHHHHHHHHhcccCCcE-EEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 68 GRVVCILSGVIGDIDASKKSLGRYANCI-EFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 68 grV~tIE~d~~~~~~~Ar~~l~g~~~~V-e~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
-+|.-||.+ +...+..+..++...... -....+..+.+..+ ...+|+|++|......+-.+.++.+...
T Consensus 21 ~~iLivdd~-~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 91 (150)
T 4e7p_A 21 MKVLVAEDQ-SMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSE 91 (150)
T ss_dssp EEEEEECSC-HHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHT
T ss_pred cEEEEEcCC-HHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHh
Confidence 478999999 888888888886332223 33456666666444 3679999999876435667788888875
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=88.84 E-value=1.4 Score=36.52 Aligned_cols=87 Identities=9% Similarity=0.090 Sum_probs=54.9
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
+|.-||+|..|. .++..+...+-+|+.++++ ++.++.+++. +... . ...+..+ . ...|+||+-.+.
T Consensus 2 ~i~iiG~G~~G~---~~a~~l~~~g~~V~~~~~~-~~~~~~~~~~--g~~~--~-~~~~~~~----~-~~~D~vi~av~~ 67 (279)
T 2f1k_A 2 KIGVVGLGLIGA---SLAGDLRRRGHYLIGVSRQ-QSTCEKAVER--QLVD--E-AGQDLSL----L-QTAKIIFLCTPI 67 (279)
T ss_dssp EEEEECCSHHHH---HHHHHHHHTTCEEEEECSC-HHHHHHHHHT--TSCS--E-EESCGGG----G-TTCSEEEECSCH
T ss_pred EEEEEcCcHHHH---HHHHHHHHCCCEEEEEECC-HHHHHHHHhC--CCCc--c-ccCCHHH----h-CCCCEEEEECCH
Confidence 577789765554 3333333324589999999 8877665431 3311 1 2233333 2 468999998887
Q ss_pred CCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 123 DIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 123 ~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
....++++.+.+. +.+ |.+|+
T Consensus 68 --~~~~~~~~~l~~~--~~~-~~~vv 88 (279)
T 2f1k_A 68 --QLILPTLEKLIPH--LSP-TAIVT 88 (279)
T ss_dssp --HHHHHHHHHHGGG--SCT-TCEEE
T ss_pred --HHHHHHHHHHHhh--CCC-CCEEE
Confidence 6678888888887 654 77665
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=88.83 E-value=8 Score=32.77 Aligned_cols=73 Identities=16% Similarity=0.066 Sum_probs=44.0
Q ss_pred CEEEEEcCCchHHHHHH-HHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-c---cCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 42 QLIVMACSSIAVSRTLA-LVAAARQTGGRVVCILSGVIGDIDASKKSLG-R---YANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~-LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g---~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+|.-||+|..|..-.. |+.+ .. ...|+.+|.+ ++.++.....+. . ....+.+...|. +.+ ...|+|
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~-g~-~~~V~l~d~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~----~~aDvV 73 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQ-GV-ADDYVFIDAN-EAKVKADQIDFQDAMANLEAHGNIVINDW-AAL----ADADVV 73 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TC-CSEEEEECSS-HHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGG----TTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CC-CCEEEEEcCC-HHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHh----CCCCEE
Confidence 36888998877765332 2222 10 1589999999 877765443332 1 112355544564 433 468999
Q ss_pred EEcCCC
Q 042616 117 LIDCNI 122 (220)
Q Consensus 117 fiD~~k 122 (220)
|+-...
T Consensus 74 iiav~~ 79 (309)
T 1hyh_A 74 ISTLGN 79 (309)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 998876
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=88.81 E-value=2.2 Score=35.37 Aligned_cols=80 Identities=13% Similarity=0.160 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhh---cC
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMG---DY 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~---~~ 110 (220)
+.+.+|-.|+ +|.....++..+.+.+.+|+.++.+ ++.++...+.++....++.++..|..+. +.. ..
T Consensus 21 ~~k~vlVTGa--s~gIG~~ia~~l~~~G~~V~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 97 (277)
T 2rhc_B 21 DSEVALVTGA--TSGIGLEIARRLGKEGLRVFVCARG-EEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERY 97 (277)
T ss_dssp TSCEEEEETC--SSHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECC--CCHHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHh
Confidence 5678998885 3445555555555557899999999 7777666555543235688888886431 111 13
Q ss_pred CCccEEEEcCCC
Q 042616 111 RGADFVLIDCNI 122 (220)
Q Consensus 111 ~~~D~VfiD~~k 122 (220)
+++|.+|..+..
T Consensus 98 g~iD~lv~~Ag~ 109 (277)
T 2rhc_B 98 GPVDVLVNNAGR 109 (277)
T ss_dssp CSCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 579999987653
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=88.79 E-value=0.91 Score=36.00 Aligned_cols=72 Identities=21% Similarity=0.156 Sum_probs=52.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh--hhhhcCCCccEEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK--LLMGDYRGADFVLI 118 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~--~L~~~~~~~D~Vfi 118 (220)
.++||-+|+ +|+...++++.+.+.+-+|++++.+ +... ..+..+++++.+|..+ .+......+|.||.
T Consensus 4 m~~ilItGa--tG~iG~~l~~~L~~~g~~V~~~~r~-~~~~-------~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~ 73 (227)
T 3dhn_A 4 VKKIVLIGA--SGFVGSALLNEALNRGFEVTAVVRH-PEKI-------KIENEHLKVKKADVSSLDEVCEVCKGADAVIS 73 (227)
T ss_dssp CCEEEEETC--CHHHHHHHHHHHHTTTCEEEEECSC-GGGC-------CCCCTTEEEECCCTTCHHHHHHHHTTCSEEEE
T ss_pred CCEEEEEcC--CchHHHHHHHHHHHCCCEEEEEEcC-cccc-------hhccCceEEEEecCCCHHHHHHHhcCCCEEEE
Confidence 468999883 6888888888887767899999999 6543 2223679999998754 23333457899997
Q ss_pred cCCC
Q 042616 119 DCNI 122 (220)
Q Consensus 119 D~~k 122 (220)
-+..
T Consensus 74 ~a~~ 77 (227)
T 3dhn_A 74 AFNP 77 (227)
T ss_dssp CCCC
T ss_pred eCcC
Confidence 6654
|
| >3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} | Back alignment and structure |
|---|
Probab=88.78 E-value=2.8 Score=29.95 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=47.2
Q ss_pred cEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 68 GRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 68 grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
.+|.-||-+ +...+..+..++...-.+. ...++.+.+..+ ...+|+|++|......+-.+.++.+.+.
T Consensus 4 ~~Ilivdd~-~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~ 72 (132)
T 3crn_A 4 KRILIVDDD-TAILDSTKQILEFEGYEVE-IAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKL 72 (132)
T ss_dssp CEEEEECSC-HHHHHHHHHHHHHTTCEEE-EESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHH
T ss_pred cEEEEEeCC-HHHHHHHHHHHHHCCceEE-EeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhh
Confidence 478899999 8888888888863222354 566666665433 2578999999876334556778887765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 220 | |||
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 100.0 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 100.0 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.97 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.7 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.7 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.7 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.69 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.67 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.59 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.57 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.56 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.53 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.53 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.52 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.51 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.49 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.46 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.41 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.4 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 99.37 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.37 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.36 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.35 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.34 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.33 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.32 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.32 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.3 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.3 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.3 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.28 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.27 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.26 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.25 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.25 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.22 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.21 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.19 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.17 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.15 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.15 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.14 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.13 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.13 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.11 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.11 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.09 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.08 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.08 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.06 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.06 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.06 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.05 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.05 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.05 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.01 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.99 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.97 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.95 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.95 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.94 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.94 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.94 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.92 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.92 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.91 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.86 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.85 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.85 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.84 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.83 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.8 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.8 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.79 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.77 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.63 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.58 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.5 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.48 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.46 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.42 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.41 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.32 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.26 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.25 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.24 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.19 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.16 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.13 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.09 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.07 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.99 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.87 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.86 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.84 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.76 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.73 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 97.7 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.69 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.67 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.64 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.6 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.6 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 97.58 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 97.55 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.53 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.51 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.44 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.44 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.3 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.28 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.26 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 97.25 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.18 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.16 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 97.16 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.14 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.04 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 96.84 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.74 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.7 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.61 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.58 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.58 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.51 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 96.11 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.93 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.92 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.73 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 95.66 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.6 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 95.07 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 95.03 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.62 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 94.48 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 94.36 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 94.3 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 94.26 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 93.6 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 93.44 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 93.43 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 93.32 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 93.32 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 93.12 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 92.69 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 92.41 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 92.37 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 92.35 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 92.35 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 92.25 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 91.89 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 91.88 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 91.77 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 91.77 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 91.76 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 91.59 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 91.58 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 91.55 | |
| d1dcfa_ | 134 | Receiver domain of the ethylene receptor {Thale cr | 91.35 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 91.26 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 91.23 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 91.16 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 91.15 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 90.89 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 90.81 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 90.81 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 90.36 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 90.34 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 90.29 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 90.17 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 90.05 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 89.94 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 89.94 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 89.66 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 89.59 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 89.45 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 89.35 | |
| d1kgsa2 | 122 | PhoB receiver domain {Thermotoga maritima [TaxId: | 89.25 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 89.05 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 88.88 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 88.86 | |
| d1peya_ | 119 | Sporulation response regulator Spo0F {Bacillus sub | 88.62 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 88.53 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 88.39 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 88.1 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 88.03 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 88.01 | |
| d1yioa2 | 128 | Response regulatory protein StyR, N-terminal domai | 87.86 | |
| d1zgza1 | 120 | TorCAD operon transcriptional regulator TorD, N-te | 87.73 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 87.67 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 87.65 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 87.63 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 87.49 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 87.48 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 87.43 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 87.34 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 87.28 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 87.23 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 87.16 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 87.13 | |
| d1qkka_ | 140 | Transcriptional regulatory protein DctD, receiver | 87.0 | |
| d2b4aa1 | 118 | Hypothetical protein BH3024 {Bacillus halodurans [ | 86.97 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 86.95 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 86.8 | |
| d1p2fa2 | 120 | Response regulator DrrB {Thermotoga maritima [TaxI | 86.53 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 86.4 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 86.21 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 86.01 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 85.92 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 85.9 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 85.79 | |
| d1mvoa_ | 121 | PhoP receiver domain {Bacillus subtilis [TaxId: 14 | 85.57 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 85.57 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 85.55 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 85.33 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 85.17 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 85.14 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 85.05 | |
| d1p6qa_ | 129 | CheY protein {Sinorhizobium meliloti, CheY2 [TaxId | 85.03 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 84.92 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 84.83 | |
| d1ys7a2 | 121 | Transcriptional regulatory protein PrrA, N-termina | 84.73 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 84.67 | |
| d2r25b1 | 128 | Response regulator Sin1 {Baker's yeast (Saccharomy | 84.54 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 84.44 | |
| d2ayxa1 | 133 | Sensor kinase protein RcsC, C-terminal domain {Esc | 84.43 | |
| d1mb3a_ | 123 | Cell division response regulator DivK {Caulobacter | 84.25 | |
| d1dz3a_ | 123 | Sporulation response regulator Spo0A {Bacillus ste | 84.15 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 84.07 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 84.07 | |
| d1zesa1 | 121 | PhoB receiver domain {Escherichia coli [TaxId: 562 | 83.92 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 83.87 | |
| d1w25a1 | 139 | Response regulator PleD, receiver domain {Caulobac | 83.73 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 83.64 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 83.62 | |
| d1k66a_ | 149 | Response regulator for cyanobacterial phytochrome | 83.57 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 83.46 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 83.38 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 83.35 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 83.3 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 83.23 | |
| d1a2oa1 | 140 | Methylesterase CheB, N-terminal domain {Salmonella | 82.94 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 82.91 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 82.81 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 82.76 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 82.71 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 82.45 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 82.27 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 82.01 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 81.95 | |
| d1k68a_ | 140 | Response regulator for cyanobacterial phytochrome | 81.92 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 81.91 | |
| d1i3ca_ | 144 | Response regulator for cyanobacterial phytochrome | 81.89 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 81.84 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 81.81 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 81.77 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 81.55 | |
| d1jbea_ | 128 | CheY protein {Escherichia coli [TaxId: 562]} | 81.18 | |
| d1zh2a1 | 119 | Transcriptional regulatory protein KdpE, N-termina | 81.08 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 80.59 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 80.42 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 80.13 |
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=4.1e-36 Score=254.03 Aligned_cols=149 Identities=22% Similarity=0.238 Sum_probs=137.8
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
+.++|.+|+||+.|++..+|++||||||+ +||||+|||.|+++ +|+|+|+|.+ ++.++.|+++++ |+.++|++++
T Consensus 41 m~~~~~~g~~L~~L~~~~~~k~iLEiGT~-~GyStl~la~al~~-~g~v~tie~~-~~~~~~A~~~~~~~g~~~~i~~~~ 117 (227)
T d1susa1 41 MTTSADEGQFLSMLLKLINAKNTMEIGVY-TGYSLLATALAIPE-DGKILAMDIN-KENYELGLPVIKKAGVDHKIDFRE 117 (227)
T ss_dssp GSCCHHHHHHHHHHHHHHTCCEEEEECCG-GGHHHHHHHHHSCT-TCEEEEEESC-CHHHHHHHHHHHHTTCGGGEEEEE
T ss_pred cccCHHHHHHHHHHHHhcCCCcEEEecch-hhhhHHHHHhhCCC-CcEEEEEecc-chhHHHHHHHHHHhccccceeeee
Confidence 56899999999999999999999999995 99999999999987 8999999999 999999999997 8888999999
Q ss_pred cchhhhhhhc------CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC----------------
Q 042616 100 GDAQKLLMGD------YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS---------------- 157 (220)
Q Consensus 100 gda~~~L~~~------~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~---------------- 157 (220)
|++.+.|+++ .++|||||+|++| .+|.+|++.+.++ |+| ||+||+||++|+|.
T Consensus 118 g~a~~~L~~l~~~~~~~~~fD~iFiDa~k--~~y~~~~e~~~~l--l~~-gGiii~DNvl~~G~v~~~~~~~~~~~~~~~ 192 (227)
T d1susa1 118 GPALPVLDEMIKDEKNHGSYDFIFVDADK--DNYLNYHKRLIDL--VKV-GGVIGYDNTLWNGSVVAPPDAPLRKYVRYY 192 (227)
T ss_dssp SCHHHHHHHHHHCGGGTTCBSEEEECSCS--TTHHHHHHHHHHH--BCT-TCCEEEETTTGGGGGGCCTTCCCCHHHHHH
T ss_pred hHHHHHHHHHHhccccCCceeEEEeccch--hhhHHHHHHHHhh--cCC-CcEEEEccCCCCCcccCCcccchHHHHHHH
Confidence 9999999876 3579999999999 9999999999998 875 99999999999871
Q ss_pred ------cc-------ceEEEeeecCCcEEEEEEe
Q 042616 158 ------WR-------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 158 ------~~-------~~~s~~lPig~Gl~v~~~~ 178 (220)
++ +|.++++|+|||+.|++|.
T Consensus 193 ~~~i~~~n~~i~~d~r~~~~llPigDGl~i~~K~ 226 (227)
T d1susa1 193 RDFVLELNKALAVDPRIEICMLPVGDGITICRRI 226 (227)
T ss_dssp HHHHHHHHHHHHHCTTBCCEEECSTTCEEEECBC
T ss_pred HHHHHHHHHHHhcCCCEEEEEeecCCeeEEEEEC
Confidence 11 6999999999999999885
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-35 Score=246.92 Aligned_cols=150 Identities=16% Similarity=0.125 Sum_probs=138.4
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
.++++|++|+||+.|++..+|++||||||+ +||||+|||.|+++ +|+|+|||.+ ++..+.|+++++ |+.++|+++
T Consensus 40 ~~~i~~~~g~lL~~L~~~~~~k~vLEiGt~-~GyStl~~a~al~~-~g~i~tie~~-~~~~~~A~~~~~~ag~~~~i~~~ 116 (219)
T d2avda1 40 DSMMTCEQAQLLANLARLIQAKKALDLGTF-TGYSALALALALPA-DGRVVTCEVD-AQPPELGRPLWRQAEAEHKIDLR 116 (219)
T ss_dssp GGSCCHHHHHHHHHHHHHTTCCEEEEECCT-TSHHHHHHHTTSCT-TCEEEEEESC-SHHHHHHHHHHHHTTCTTTEEEE
T ss_pred CcccCHHHHHHHHHHHHccCCCeEEEEech-hhHHHHHHHHhCCC-CceEEEEeec-hhHHHHHHHHHHhcCccceEEEE
Confidence 367999999999999999999999999996 99999999999987 8999999999 999999999997 888999999
Q ss_pred Ecchhhhhhhc-----CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC----------------
Q 042616 99 KGDAQKLLMGD-----YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS---------------- 157 (220)
Q Consensus 99 ~gda~~~L~~~-----~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~---------------- 157 (220)
+||+.+.++.+ .++|||||+|+++ ..|.+|++.+.++ |+| ||+||+||++++|.
T Consensus 117 ~Gda~e~l~~~~~~~~~~~fD~ifiD~dk--~~y~~~~~~~~~l--L~~-GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~ 191 (219)
T d2avda1 117 LKPALETLDELLAAGEAGTFDVAVVDADK--ENCSAYYERCLQL--LRP-GGILAVLRVLWRGKVLQPPKGDVAAECVRN 191 (219)
T ss_dssp ESCHHHHHHHHHHTTCTTCEEEEEECSCS--TTHHHHHHHHHHH--EEE-EEEEEEECCSGGGGGGSCCTTCHHHHHHHH
T ss_pred EeehhhcchhhhhhcccCCccEEEEeCCH--HHHHHHHHHHHHH--hcC-CcEEEEeCCcccCcccCcccCCHHHHHHHH
Confidence 99999988765 4689999999999 9999999999998 875 99999999999871
Q ss_pred cc-------ceEEEeeecCCcEEEEEEe
Q 042616 158 WR-------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 158 ~~-------~~~s~~lPig~Gl~v~~~~ 178 (220)
|+ +|.+++||+|||+.|++|.
T Consensus 192 ~~~~i~~d~r~~~~llPigdGl~ia~Kl 219 (219)
T d2avda1 192 LNERIRRDVRVYISLLPLGDGLTLAFKI 219 (219)
T ss_dssp HHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred HHHHHHhCCCEEEEEeecCCeeEEEEeC
Confidence 22 7999999999999999973
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.97 E-value=5.8e-30 Score=213.96 Aligned_cols=152 Identities=12% Similarity=0.159 Sum_probs=129.9
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
.+.++|++|+||..|++..+|++||||||+ +|+||++||.|+++ +|+|+|||.+ ++.++.|+++++ |+.++|+++
T Consensus 37 ~m~i~~~~G~lL~~lv~~~kpk~ILEiGt~-~G~Sti~la~al~~-~g~v~sid~~-~~~~~~a~~~~~~~gl~~~i~l~ 113 (214)
T d2cl5a1 37 AMNVGDAKGQIMDAVIREYSPSLVLELGAY-CGYSAVRMARLLQP-GARLLTMEMN-PDYAAITQQMLNFAGLQDKVTIL 113 (214)
T ss_dssp CCSCHHHHHHHHHHHHHHHCCSEEEEECCT-TSHHHHHHHTTCCT-TCEEEEEESC-HHHHHHHHHHHHHHTCGGGEEEE
T ss_pred ccccCHHHHHHHHHHHHhhCCCEEEEEccC-chhHHHHHHHhCCC-ccEEEEEecc-HHHHHHHHHHHHHcCCCccceee
Confidence 456999999999999999999999999996 99999999999986 8999999999 999999999997 888899999
Q ss_pred Ecchhhhhhhc-----CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC-----cc----ceEEE
Q 042616 99 KGDAQKLLMGD-----YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS-----WR----GYKTH 164 (220)
Q Consensus 99 ~gda~~~L~~~-----~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~-----~~----~~~s~ 164 (220)
.||+.+.|+.+ .++||+||+|+++ ..|..++.......+|+| ||+||+||++++|. +. ++.+.
T Consensus 114 ~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~--~~~~~~~~l~~~~~lLkp-GGvIv~Ddvl~~g~~~~~~~vr~~~~~~~~ 190 (214)
T d2cl5a1 114 NGASQDLIPQLKKKYDVDTLDMVFLDHWK--DRYLPDTLLLEKCGLLRK-GTVLLADNVIVPGTPDFLAYVRGSSSFECT 190 (214)
T ss_dssp ESCHHHHGGGHHHHSCCCCEEEEEECSCG--GGHHHHHHHHHHTTCEEE-EEEEEESCCCCCCCHHHHHHHHHCTTEEEE
T ss_pred eccccccccchhhcccccccceeeecccc--cccccHHHHHHHhCccCC-CcEEEEeCcCCCCChHHHHHHhccCceeeh
Confidence 99999998875 2579999999999 888876555443222765 99999999999982 11 23322
Q ss_pred -------eeecCCcEEEEEEe
Q 042616 165 -------FLPIGEGLLVTRIG 178 (220)
Q Consensus 165 -------~lPig~Gl~v~~~~ 178 (220)
++|++||++++.+.
T Consensus 191 ~~~~~~~~~~~~dgl~~s~~~ 211 (214)
T d2cl5a1 191 HYSSYLEYMKVVDGLEKAIYQ 211 (214)
T ss_dssp EEEEECTTSSSEEEEEEEEEC
T ss_pred hhhhcceecccCCceEEEEec
Confidence 49999999999875
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=2.8e-17 Score=140.61 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=115.2
Q ss_pred hHHHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHh
Q 042616 9 ATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSL 88 (220)
Q Consensus 9 a~~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l 88 (220)
....|...++...+++-|..+.+|-.++...+..+|||+||| +|+.|++||.++.+ .|+|+++|.+ +++++.|++|+
T Consensus 65 t~~~~~~~~~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~G-sG~lt~~La~~vgp-~G~V~~~d~~-~~~~~~Ar~n~ 141 (264)
T d1i9ga_ 65 LLVDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGP-AGQVISYEQR-ADHAEHARRNV 141 (264)
T ss_dssp CHHHHHTTSCSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCT-TSEEEEECSC-HHHHHHHHHHH
T ss_pred CHHHHHhhccCCccccchHHHHHHHHHhCCCCCCEEEecCcC-CcHHHHHHHHhhCC-CcEEEEecCC-HHHHHHHHHhh
Confidence 355688888888899999999999999999999999999997 99999999999987 8999999999 99999999998
Q ss_pred c----ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 89 G----RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 89 ~----g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+ +..++++++++|+.+. +...+.||.||+|-+. ..++++.+.+. |+| ||.+++....
T Consensus 142 ~~~~~~~~~nv~~~~~d~~~~-~~~~~~fDaV~ldlp~----P~~~l~~~~~~--Lkp-GG~lv~~~P~ 202 (264)
T d1i9ga_ 142 SGCYGQPPDNWRLVVSDLADS-ELPDGSVDRAVLDMLA----PWEVLDAVSRL--LVA-GGVLMVYVAT 202 (264)
T ss_dssp HHHHTSCCTTEEEECSCGGGC-CCCTTCEEEEEEESSC----GGGGHHHHHHH--EEE-EEEEEEEESS
T ss_pred hhhccCCCceEEEEecccccc-cccCCCcceEEEecCC----HHHHHHHHHhc--cCC-CCEEEEEeCc
Confidence 7 2357899999999874 1224789999999765 45778888988 886 9998886544
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.70 E-value=1e-16 Score=129.13 Aligned_cols=119 Identities=19% Similarity=0.208 Sum_probs=101.6
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
....++-.++..+.+..+..+||||||| +|+.|++||.. +++|++||.+ +++++.|++|++ ++.++|++++|
T Consensus 16 ~t~~eir~~il~~l~~~~g~~VLDiGcG-sG~~s~~lA~~----~~~V~avD~~-~~~l~~a~~n~~~~gl~~~v~~~~g 89 (186)
T d1l3ia_ 16 PTAMEVRCLIMCLAEPGKNDVAVDVGCG-TGGVTLELAGR----VRRVYAIDRN-PEAISTTEMNLQRHGLGDNVTLMEG 89 (186)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCT-TSHHHHHHHTT----SSEEEEEESC-HHHHHHHHHHHHHTTCCTTEEEEES
T ss_pred CChHHHHHHHHHhcCCCCCCEEEEEECC-eEccccccccc----ceEEEEecCC-HHHHHHHHHHHHHcCCCcceEEEEC
Confidence 3455665666667788899999999997 99999988753 6799999999 999999999997 78789999999
Q ss_pred chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|+.+.+.. ...||.||++... ....++++.+.+. |+| ||.+++....
T Consensus 90 da~~~~~~-~~~~D~v~~~~~~--~~~~~~~~~~~~~--Lkp-gG~lvi~~~~ 136 (186)
T d1l3ia_ 90 DAPEALCK-IPDIDIAVVGGSG--GELQEILRIIKDK--LKP-GGRIIVTAIL 136 (186)
T ss_dssp CHHHHHTT-SCCEEEEEESCCT--TCHHHHHHHHHHT--EEE-EEEEEEEECB
T ss_pred chhhcccc-cCCcCEEEEeCcc--ccchHHHHHHHHH--hCc-CCEEEEEeec
Confidence 99998754 5789999999998 8889999999998 876 8888776544
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.70 E-value=1.2e-17 Score=141.86 Aligned_cols=130 Identities=9% Similarity=0.009 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-
Q 042616 11 KAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG- 89 (220)
Q Consensus 11 ~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~- 89 (220)
..|...++.+..++-|+-+.++-+.+...+..+|||+||| +|+.|++||.++.+ .|+|+++|.+ +++++.|++|++
T Consensus 56 ~~~~~~~~r~~qiiypkD~~~Ii~~l~i~pG~rVLEiG~G-sG~lt~~la~~v~~-~g~V~~vD~~-e~~~~~A~~n~~~ 132 (250)
T d1yb2a1 56 MYFGRVIRRNTQIISEIDASYIIMRCGLRPGMDILEVGVG-SGNMSSYILYALNG-KGTLTVVERD-EDNLKKAMDNLSE 132 (250)
T ss_dssp GGHHHHC------------------CCCCTTCEEEEECCT-TSHHHHHHHHHHTT-SSEEEEECSC-HHHHHHHHHHHHT
T ss_pred HHHHhhCCCCCcccCHHHHHHHHHHcCCCCcCEEEEeeee-CcHHHHHHHHHhCC-CcEEEEEECC-HHHHHHHHHHHHH
Confidence 4577788888888888888888888899999999999997 99999999999876 8999999999 999999999997
Q ss_pred -ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 90 -RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 90 -g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+..++|++.++|..+.++ ...||.||+|.+. ..++++.+.+. |+| ||++++...
T Consensus 133 ~~~~~nv~~~~~Di~~~~~--~~~fD~V~ld~p~----p~~~l~~~~~~--LKp-GG~lv~~~P 187 (250)
T d1yb2a1 133 FYDIGNVRTSRSDIADFIS--DQMYDAVIADIPD----PWNHVQKIASM--MKP-GSVATFYLP 187 (250)
T ss_dssp TSCCTTEEEECSCTTTCCC--SCCEEEEEECCSC----GGGSHHHHHHT--EEE-EEEEEEEES
T ss_pred hcCCCceEEEEeeeecccc--cceeeeeeecCCc----hHHHHHHHHHh--cCC-CceEEEEeC
Confidence 445889999999998765 3789999999876 44678889888 876 999998644
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=6.4e-17 Score=138.30 Aligned_cols=132 Identities=12% Similarity=0.060 Sum_probs=114.9
Q ss_pred hHHHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHh
Q 042616 9 ATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSL 88 (220)
Q Consensus 9 a~~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l 88 (220)
....|+..++....++-|..+.++..++...+..+|||+||| +|+.|++||+++.+ +|+|+++|.+ +++++.|++++
T Consensus 72 ~~~d~~~~~~r~~qiiypkd~~~Ii~~l~i~pG~~VLDiG~G-sG~lt~~lA~~~~~-~G~V~~vD~~-~~~~~~A~~~~ 148 (266)
T d1o54a_ 72 SLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVG-SGAMCAVLARAVGS-SGKVFAYEKR-EEFAKLAESNL 148 (266)
T ss_dssp CHHHHHHTCCC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCT-TSHHHHHHHHHTTT-TCEEEEECCC-HHHHHHHHHHH
T ss_pred CHHHHHhhccCCccccchHHHHHHHHhhCCCCCCEEEECCCC-CCHHHHHHHHHhCC-CcEEEEEeCC-HHHHHHHHHHH
Confidence 355788888888899999999999999999999999999997 99999999999876 8999999999 99999999999
Q ss_pred c--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 89 G--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 89 ~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+ ++.+++++..+|..+.++ ...||.||+|.+. ..++++.+.+. |+| ||.+++.-.
T Consensus 149 ~~~g~~~~v~~~~~d~~~~~~--~~~~D~V~~d~p~----p~~~l~~~~~~--LKp-GG~lv~~~P 205 (266)
T d1o54a_ 149 TKWGLIERVTIKVRDISEGFD--EKDVDALFLDVPD----PWNYIDKCWEA--LKG-GGRFATVCP 205 (266)
T ss_dssp HHTTCGGGEEEECCCGGGCCS--CCSEEEEEECCSC----GGGTHHHHHHH--EEE-EEEEEEEES
T ss_pred HHhccccCcEEEecccccccc--ccceeeeEecCCC----HHHHHHHHHhh--cCC-CCEEEEEeC
Confidence 8 677889999999876543 3679999999865 56778999998 886 999988643
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.5e-16 Score=139.63 Aligned_cols=133 Identities=20% Similarity=0.159 Sum_probs=110.6
Q ss_pred hHHHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHh
Q 042616 9 ATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSL 88 (220)
Q Consensus 9 a~~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l 88 (220)
....|...++....++-|..+.++-.++...+..+|||+||| +|+.|++||.++.+ .|+|+++|.+ +++++.|++|+
T Consensus 67 t~~d~~~~~~r~tqiiypkD~~~Il~~l~i~pG~rVLE~GtG-sG~lt~~LAr~vg~-~G~V~t~E~~-~~~~~~A~~n~ 143 (324)
T d2b25a1 67 ALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSG-SGGMSLFLSKAVGS-QGRVISFEVR-KDHHDLAKKNY 143 (324)
T ss_dssp CHHHHHHHSCCSSCCCCHHHHHHHHHHHTCCTTCEEEEECCT-TSHHHHHHHHHHCT-TCEEEEEESS-HHHHHHHHHHH
T ss_pred CHHHHhhccCCCCcccccccHHHHHHHhCCCCCCEEEEeccc-ccHHHHHHHHHhCC-CcEEEEecCC-HHHHHHHHHHH
Confidence 356788888888899999999999999999999999999997 99999999999987 8999999999 99999999998
Q ss_pred c------------ccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 89 G------------RYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 89 ~------------g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+ ++.++|+++++|..+....+ ...||.||+|-+. ..++++.+.+. |+| ||.+++.-
T Consensus 144 ~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~LD~p~----P~~~l~~~~~~--LKp-GG~lv~~~ 212 (324)
T d2b25a1 144 KHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLN----PHVTLPVFYPH--LKH-GGVCAVYV 212 (324)
T ss_dssp HHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSSS----TTTTHHHHGGG--EEE-EEEEEEEE
T ss_pred HHhhhhhhhhhhhccccceeEEecchhhcccccCCCCcceEeecCcC----HHHHHHHHHHh--ccC-CCEEEEEe
Confidence 6 12478999999988765433 3679999999765 23578889988 886 99998864
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.59 E-value=2.1e-15 Score=124.37 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=92.7
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
+..|..-..+-.++...+..+||||||| +||+|+.||+.+.+ .|+|+++|.+ ++.++.|+++++ ++ +++.++++
T Consensus 58 i~~P~~~a~~l~~l~l~~g~~VLdiG~G-tG~~s~~la~~~~~-~g~V~~id~~-~~~~~~a~~~~~~~~~-~n~~~~~~ 133 (213)
T d1dl5a1 58 SSQPSLMALFMEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGE-KGLVVSVEYS-RKICEIAKRNVERLGI-ENVIFVCG 133 (213)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCT-TCEEEEEESC-HHHHHHHHHHHHHTTC-CSEEEEES
T ss_pred eccchhhHHHHHhhhccccceEEEecCc-cchhHHHHHHHhCC-CCcEEEeecc-hhhHHHhhhhHhhhcc-cccccccC
Confidence 4557765545556678899999999997 99999999998876 8999999999 999999999998 44 78999999
Q ss_pred chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|+.+.++. .++||.|++++.. ...+ +.+.+. |+| ||.+|+
T Consensus 134 d~~~~~~~-~~~fD~I~~~~~~--~~~p---~~l~~~--Lkp-GG~lv~ 173 (213)
T d1dl5a1 134 DGYYGVPE-FSPYDVIFVTVGV--DEVP---ETWFTQ--LKE-GGRVIV 173 (213)
T ss_dssp CGGGCCGG-GCCEEEEEECSBB--SCCC---HHHHHH--EEE-EEEEEE
T ss_pred chHHcccc-ccchhhhhhhccH--HHhH---HHHHHh--cCC-CcEEEE
Confidence 99887754 5689999999987 5554 334455 666 888776
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.6e-15 Score=126.21 Aligned_cols=126 Identities=13% Similarity=0.071 Sum_probs=97.9
Q ss_pred HHHHH-Hhc--CCCCCChhH-HHHHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHH
Q 042616 12 AYLQA-LKM--GKRGKEPDV-GEFISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKK 86 (220)
Q Consensus 12 aY~~~-l~~--~~~~~~p~~-~~~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~ 86 (220)
||.|. ++. ++.+..|.. |.+|..|.. ..+..+||||||| +||.|..||..+.+ .|+|++||.+ ++.++.|++
T Consensus 43 aY~D~~l~i~~~~~is~P~~~a~~le~L~~~l~~g~~VLdiG~G-sGy~ta~la~l~~~-~g~V~~ie~~-~~l~~~a~~ 119 (224)
T d1i1na_ 43 PYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG-SGILTACFARMVGC-TGKVIGIDHI-KELVDDSVN 119 (224)
T ss_dssp TTSSSCEEEETTEEECCHHHHHHHHHHTTTTSCTTCEEEEETCT-TSHHHHHHHHHHCT-TCEEEEEESC-HHHHHHHHH
T ss_pred cCCCCCccccchhhhhhhHHHHHHHHHHhhccCCCCeEEEecCC-CCHHHHHHHHHhCC-CceEEEEcCC-HHHHHHHHH
Confidence 46665 332 344666766 677776654 5667899999997 99999999998876 8999999999 999999999
Q ss_pred Hhc--cc----CCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 87 SLG--RY----ANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 87 ~l~--g~----~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+++ ++ .+++++++||+.+..+. ..+||.|++++.. ...+ +.+.+. |+| ||.+|+
T Consensus 120 ~l~~~~~~~~~~~~~~~~~gD~~~~~~~-~~~fD~I~~~~~~--~~ip---~~l~~~--Lkp-GG~LV~ 179 (224)
T d1i1na_ 120 NVRKDDPTLLSSGRVQLVVGDGRMGYAE-EAPYDAIHVGAAA--PVVP---QALIDQ--LKP-GGRLIL 179 (224)
T ss_dssp HHHHHCTHHHHTSSEEEEESCGGGCCGG-GCCEEEEEECSBB--SSCC---HHHHHT--EEE-EEEEEE
T ss_pred hccccCcccccccceEEEEeecccccch-hhhhhhhhhhcch--hhcC---HHHHhh--cCC-CcEEEE
Confidence 986 32 36799999999887654 5789999999987 5443 345555 666 998887
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.56 E-value=2.2e-15 Score=124.98 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=99.7
Q ss_pred hHHHHHHH-Hhc--CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHH
Q 042616 9 ATKAYLQA-LKM--GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASK 85 (220)
Q Consensus 9 a~~aY~~~-l~~--~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar 85 (220)
...||.|+ ++. ++.+..|..-..+..++...+..+||||||| +||+|..||.-+ +++|++||.+ ++.++.|+
T Consensus 44 ~~~AY~D~~l~i~~g~~is~P~~~a~ml~~L~l~~g~~VLeIGsG-sGY~taila~l~---g~~V~~ie~~-~~l~~~a~ 118 (215)
T d1jg1a_ 44 KKYAHIDEPLPIPAGQTVSAPHMVAIMLEIANLKPGMNILEVGTG-SGWNAALISEIV---KTDVYTIERI-PELVEFAK 118 (215)
T ss_dssp GGGTTSSSCEECSTTCEECCHHHHHHHHHHHTCCTTCCEEEECCT-TSHHHHHHHHHH---CSCEEEEESC-HHHHHHHH
T ss_pred hhcccccCCcccchhhhhhhhhhHHHHHHhhccCccceEEEecCC-CChhHHHHHHhh---CceeEEEecc-HHHHHHHH
Confidence 55678887 333 5567888874444455588899999999997 999999999754 5789999999 99999999
Q ss_pred HHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 86 KSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 86 ~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++++ ++ +++++++||+.+..+. ..+||.|++.+.. ...++ .+... |++ ||.+|+-
T Consensus 119 ~~l~~~g~-~nv~~~~gd~~~g~~~-~~pfD~Iiv~~a~--~~ip~---~l~~q--L~~-gGrLv~p 175 (215)
T d1jg1a_ 119 RNLERAGV-KNVHVILGDGSKGFPP-KAPYDVIIVTAGA--PKIPE---PLIEQ--LKI-GGKLIIP 175 (215)
T ss_dssp HHHHHTTC-CSEEEEESCGGGCCGG-GCCEEEEEECSBB--SSCCH---HHHHT--EEE-EEEEEEE
T ss_pred HHHHHcCC-ceeEEEECccccCCcc-cCcceeEEeeccc--ccCCH---HHHHh--cCC-CCEEEEE
Confidence 9998 55 7899999999887765 6899999999988 54432 23344 555 9988873
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=1.3e-14 Score=120.47 Aligned_cols=121 Identities=10% Similarity=-0.034 Sum_probs=97.8
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcc
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGD 101 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gd 101 (220)
..++..+.|..++...+.++||||||| +|..+..|++.. +.+|++||++ +.+++.|+++.. ++.++|+|+++|
T Consensus 17 ~~~~~~~~l~~~~~l~pg~~VLDiGCG-~G~~~~~la~~~---~~~v~GvD~s-~~~~~~ar~~~~~~gl~~~v~~~~~d 91 (245)
T d1nkva_ 17 FTEEKYATLGRVLRMKPGTRILDLGSG-SGEMLCTWARDH---GITGTGIDMS-SLFTAQAKRRAEELGVSERVHFIHND 91 (245)
T ss_dssp CCHHHHHHHHHHTCCCTTCEEEEETCT-TCHHHHHHHHHT---CCEEEEEESC-HHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred CCHHHHHHHHHHcCCCCCCEEEEEcCC-CCHHHHHHHHhc---CCEEEEEecc-cchhhHHHHHHHHhhccccchhhhhH
Confidence 466666777777777888999999997 999999888752 5799999999 999999999986 788899999999
Q ss_pred hhhhhhhcCCCccEEEEc-CCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 102 AQKLLMGDYRGADFVLID-CNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD-~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+.+..+ .++||+|+.= +-..-.++...++.+.+. |+| ||.+++.+..+
T Consensus 92 ~~~~~~--~~~fD~v~~~~~~~~~~d~~~~l~~~~r~--LkP-GG~l~i~~~~~ 140 (245)
T d1nkva_ 92 AAGYVA--NEKCDVAACVGATWIAGGFAGAEELLAQS--LKP-GGIMLIGEPYW 140 (245)
T ss_dssp CTTCCC--SSCEEEEEEESCGGGTSSSHHHHHHHTTS--EEE-EEEEEEEEEEE
T ss_pred Hhhccc--cCceeEEEEEehhhccCCHHHHHHHHHHH--cCc-CcEEEEEeccc
Confidence 998654 4789999843 222124678999999998 886 88888876543
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.53 E-value=5.3e-15 Score=123.34 Aligned_cols=125 Identities=17% Similarity=0.130 Sum_probs=97.3
Q ss_pred hHHHHHHH---Hhc--CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHH
Q 042616 9 ATKAYLQA---LKM--GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDA 83 (220)
Q Consensus 9 a~~aY~~~---l~~--~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~ 83 (220)
...||.|+ ++. ++.+..|.....+...+...+..+||||||| +||.|..||.- +++|++||.+ ++.++.
T Consensus 34 ~~~AY~d~~~~l~i~~g~~~~~p~~~a~ml~~L~l~~g~~VLdIG~G-sGy~ta~La~l----~~~V~aiE~~-~~~~~~ 107 (224)
T d1vbfa_ 34 KDYAYAHTHEALPILPGINTTALNLGIFMLDELDLHKGQKVLEIGTG-IGYYTALIAEI----VDKVVSVEIN-EKMYNY 107 (224)
T ss_dssp GGGSSSSTTCCEEEETTEEECCHHHHHHHHHHTTCCTTCEEEEECCT-TSHHHHHHHHH----SSEEEEEESC-HHHHHH
T ss_pred hhcCccCcccCcccCCCCceehhhhHHHHHHHhhhcccceEEEecCC-CCHHHHHHHHH----hccccccccc-HHHHHH
Confidence 44567665 333 3456777775555556688999999999997 99999999875 5899999999 999999
Q ss_pred HHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 84 SKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 84 Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|++++... ++++++++|.....+. .++||.|++.+.. ...+ +.+... |++ ||.+|+
T Consensus 108 A~~~~~~~-~nv~~~~~d~~~g~~~-~~pfD~Iiv~~a~--~~ip---~~l~~q--Lk~-GGrLV~ 163 (224)
T d1vbfa_ 108 ASKLLSYY-NNIKLILGDGTLGYEE-EKPYDRVVVWATA--PTLL---CKPYEQ--LKE-GGIMIL 163 (224)
T ss_dssp HHHHHTTC-SSEEEEESCGGGCCGG-GCCEEEEEESSBB--SSCC---HHHHHT--EEE-EEEEEE
T ss_pred HHHHHhcc-cccccccCchhhcchh-hhhHHHHHhhcch--hhhh---HHHHHh--cCC-CCEEEE
Confidence 99998755 6899999999886665 5789999999877 5544 334455 665 998876
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.52 E-value=1.9e-14 Score=112.50 Aligned_cols=114 Identities=10% Similarity=0.031 Sum_probs=91.5
Q ss_pred HHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhh
Q 042616 31 FISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 31 ~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~ 108 (220)
+...|....+.++|||+||| +|..++..+. ....+|++||.| +++++.+++|++ ++.++++++++|+.+.++.
T Consensus 5 ~fn~l~~~~~g~~vlDl~~G-tG~~~iea~~---rga~~v~~ve~~-~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~ 79 (152)
T d2esra1 5 IFNMIGPYFNGGRVLDLFAG-SGGLAIEAVS---RGMSAAVLVEKN-RKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC 79 (152)
T ss_dssp HHHHHCSCCCSCEEEEETCT-TCHHHHHHHH---TTCCEEEEECCC-HHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH
T ss_pred HHHHHHhhCCCCeEEEcCCc-cCHHHHHHHH---hCcceeeeehhc-hhhhhhhhhhhhhcccccchhhhcccccccccc
Confidence 34445445678999999997 9998885443 223599999999 999999999998 6778899999999999877
Q ss_pred cCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 109 DYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 109 ~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
...+||+||+|++-....+...++.+...+.|++ ||+|++.
T Consensus 80 ~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~-~g~iiiE 120 (152)
T d2esra1 80 LTGRFDLVFLDPPYAKETIVATIEALAAKNLLSE-QVMVVCE 120 (152)
T ss_dssp BCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEE-EEEEEEE
T ss_pred cccccceeEechhhccchHHHHHHHHHHCCCcCC-CeEEEEE
Confidence 6789999999987423567888998887654664 9998875
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.51 E-value=5.4e-15 Score=123.14 Aligned_cols=127 Identities=16% Similarity=0.117 Sum_probs=96.6
Q ss_pred HHHHH-Hhc--CCCCCChhH-HHHHHHHH-hhCCCCEEEEEcCCchHHHHHHHHHHcCCC----CcEEEEEeCCchhHHH
Q 042616 12 AYLQA-LKM--GKRGKEPDV-GEFISALA-AGNNAQLIVMACSSIAVSRTLALVAAARQT----GGRVVCILSGVIGDID 82 (220)
Q Consensus 12 aY~~~-l~~--~~~~~~p~~-~~~L~~La-~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~----~grV~tIE~d~~~~~~ 82 (220)
||.|. ++. ++.+..|.. |.+|..|. ...+.++||||||| +||.|..|+..+.+. +++|++||.+ ++.++
T Consensus 47 aY~D~~lpi~~~~~is~P~~~a~~l~~L~~~l~~g~~VLeIGtG-sGY~ta~la~l~g~~g~~~~~~V~~iE~~-~~l~~ 124 (223)
T d1r18a_ 47 PYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSG-SGYLTACFYRYIKAKGVDADTRIVGIEHQ-AELVR 124 (223)
T ss_dssp TTBSSCEEEETTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCT-TSHHHHHHHHHHHHSCCCTTCEEEEEESC-HHHHH
T ss_pred ccCCCCccccCCceeehhhhHHHHHHHHhhccCCCCeEEEecCC-CCHHHHHHHHHhhhccCCcccEEEEEecC-HHHHH
Confidence 56666 332 344667765 77777764 46778999999997 999999999876542 3599999999 99999
Q ss_pred HHHHHhc--cc----CCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 83 ASKKSLG--RY----ANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 83 ~Ar~~l~--g~----~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.|++++. ++ ..+|+++++|+.+..+. .++||.|++++.. ...++ .+... |++ ||.+|+
T Consensus 125 ~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~-~~~fD~Iiv~~a~--~~~p~---~l~~~--Lk~-gG~lV~ 188 (223)
T d1r18a_ 125 RSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-NAPYNAIHVGAAA--PDTPT---ELINQ--LAS-GGRLIV 188 (223)
T ss_dssp HHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-GCSEEEEEECSCB--SSCCH---HHHHT--EEE-EEEEEE
T ss_pred HHHHhhhhcchhhcCccEEEEEeccccccccc-ccceeeEEEEeec--hhchH---HHHHh--cCC-CcEEEE
Confidence 9999875 11 26899999999887655 5789999999998 65543 34455 665 898876
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.49 E-value=8.7e-14 Score=114.51 Aligned_cols=113 Identities=10% Similarity=0.039 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchh
Q 042616 26 PDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQ 103 (220)
Q Consensus 26 p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~ 103 (220)
+...+||...+...+.++||||||| +|..|..|+.. +++|++||++ +.+++.|++++. ++ +++.++++|++
T Consensus 2 ~~~~~~l~~~~~~~~~~rILDiGcG-tG~~~~~la~~----~~~v~gvD~S-~~~l~~A~~~~~~~~~-~~~~~~~~d~~ 74 (234)
T d1xxla_ 2 HHSLGLMIKTAECRAEHRVLDIGAG-AGHTALAFSPY----VQECIGVDAT-KEMVEVASSFAQEKGV-ENVRFQQGTAE 74 (234)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCT-TSHHHHHHGGG----SSEEEEEESC-HHHHHHHHHHHHHHTC-CSEEEEECBTT
T ss_pred chHHHHHHHHhCCCCCCEEEEeCCc-CcHHHHHHHHh----CCeEEEEeCC-hhhhhhhhhhhccccc-ccccccccccc
Confidence 5677899999999999999999997 99999999874 5799999999 999999999987 55 67999999998
Q ss_pred hhhhhcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 104 KLLMGDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+ +|-..++||+|+.-..- .-.+...+++.+.+. |+| ||.+++
T Consensus 75 ~-~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~--Lkp-gG~~~~ 117 (234)
T d1xxla_ 75 S-LPFPDDSFDIITCRYAAHHFSDVRKAVREVARV--LKQ-DGRFLL 117 (234)
T ss_dssp B-CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHH--EEE-EEEEEE
T ss_pred c-ccccccccceeeeeceeecccCHHHHHHHHHHe--eCC-CcEEEE
Confidence 8 44335789999975443 114678999999999 987 776554
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.46 E-value=1.9e-13 Score=111.32 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhh
Q 042616 27 DVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQK 104 (220)
Q Consensus 27 ~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~ 104 (220)
+.+++|.. +...+.++||||||| +|.+|..|+.. +.+|++||++ +.+++.|++++. +. ++++++++|+.+
T Consensus 3 ~~~~ll~~-~~l~~~~rVLDiGcG-~G~~~~~l~~~----~~~v~gvD~s-~~~i~~A~~~~~~~~~-~~i~~~~~d~~~ 74 (231)
T d1vl5a_ 3 DLAKLMQI-AALKGNEEVLDVATG-GGHVANAFAPF----VKKVVAFDLT-EDILKVARAFIEGNGH-QQVEYVQGDAEQ 74 (231)
T ss_dssp CHHHHHHH-HTCCSCCEEEEETCT-TCHHHHHHGGG----SSEEEEEESC-HHHHHHHHHHHHHTTC-CSEEEEECCC-C
T ss_pred hHHHHHHh-cCCCCcCEEEEeccc-CcHHHHHHHHh----CCEEEEEECC-HHHHhhhhhccccccc-cccccccccccc
Confidence 45666655 678888999999997 99999988764 6799999999 999999999986 54 689999999988
Q ss_pred hhhhcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 105 LLMGDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+|...++||+|+.-..- .-.+....++.+.+. |+| ||.+++.
T Consensus 75 -l~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~--Lkp-gG~l~i~ 117 (231)
T d1vl5a_ 75 -MPFTDERFHIVTCRIAAHHFPNPASFVSEAYRV--LKK-GGQLLLV 117 (231)
T ss_dssp -CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred -ccccccccccccccccccccCCHHHHHHHHHHh--cCC-CcEEEEE
Confidence 44325789999866543 114678899999999 886 8866653
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=5.2e-13 Score=110.28 Aligned_cols=116 Identities=15% Similarity=-0.014 Sum_probs=90.3
Q ss_pred HHHHHHHh--hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAA--GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~--~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~ 107 (220)
.++..++. ..++++||||||| +|+++.+|++.. ..+|++||++ +.+++.|+++++....++.++.+++.+...
T Consensus 41 ~~~~~la~~~~~~g~~VLdIGcG-~G~~a~~~a~~~---~~~v~~id~s-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 115 (229)
T d1zx0a1 41 PYMHALAAAASSKGGRVLEVGFG-MAIAASKVQEAP---IDEHWIIECN-DGVFQRLRDWAPRQTHKVIPLKGLWEDVAP 115 (229)
T ss_dssp HHHHHHHHHHTTTCEEEEEECCT-TSHHHHHHHTSC---EEEEEEEECC-HHHHHHHHHHGGGCSSEEEEEESCHHHHGG
T ss_pred HHHHHHHHhhccCCCeEEEeecc-chHHHHHHHHcC---CCeEEEeCCC-HHHHHHHHHHhhhccccccccccccccccc
Confidence 34444443 2456799999997 999999998742 4689999999 999999999988544679999999988776
Q ss_pred hc-CCCccEEEEcCCCCC------ccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 108 GD-YRGADFVLIDCNIDI------DGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 108 ~~-~~~~D~VfiD~~k~~------~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+ .++||.||.|..... .+...+++.+.+. |+| ||++++.|..
T Consensus 116 ~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~--Lkp-GG~~~~~~~~ 165 (229)
T d1zx0a1 116 TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRL--LKP-GGVLTYCNLT 165 (229)
T ss_dssp GSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHH--EEE-EEEEEECCHH
T ss_pred ccccccccceeecccccccccccccCHHHHHHHHHHH--cCC-CcEEEEEecC
Confidence 55 478999999986511 2345688889998 886 9999887654
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.40 E-value=5.4e-13 Score=107.35 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=91.5
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhh
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLL 106 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L 106 (220)
-.+...|.......+|||++|| +|..++..+. ....+|++||.| ++.++.+++|++ +..++++++++|+.+++
T Consensus 30 ealFn~l~~~~~~~~vLDlfaG-sG~~g~ea~s---rGa~~v~~ve~~-~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l 104 (182)
T d2fhpa1 30 ESIFNMIGPYFDGGMALDLYSG-SGGLAIEAVS---RGMDKSICIEKN-FAALKVIKENIAITKEPEKFEVRKMDANRAL 104 (182)
T ss_dssp HHHHHHHCSCCSSCEEEETTCT-TCHHHHHHHH---TTCSEEEEEESC-HHHHHHHHHHHHHHTCGGGEEEEESCHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEcccc-cccccceeee---cchhHHHHHHHH-HHHHHHHHHHhhhhhcccccccccccchhhh
Confidence 3444555445678999999996 9999885444 213589999999 999999999998 66678999999999988
Q ss_pred hhc---CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 107 MGD---YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 107 ~~~---~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.+ ..+||+||+|++-....|.++++.+...+.|. ++|+||+.
T Consensus 105 ~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~-~~giIi~E 150 (182)
T d2fhpa1 105 EQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLT-NEAVIVCE 150 (182)
T ss_dssp HHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEE-EEEEEEEE
T ss_pred hhhcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCC-CCEEEEEE
Confidence 654 35799999999743478899999998755465 59998874
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.37 E-value=1.4e-12 Score=109.04 Aligned_cols=121 Identities=11% Similarity=0.039 Sum_probs=89.2
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcC--CCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAAR--QTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~--~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~ 99 (220)
.+..|....+++.|....+|++||||||+ .|.|+++++..+. ...++|++||++ +.....+. ...++|++++
T Consensus 62 ~~k~p~d~~~~~eli~~~KPk~ILEIGv~-~GgS~~~~a~~l~~~~~~~kI~giDId-~~~~~~~~----~~~~~I~~i~ 135 (232)
T d2bm8a1 62 MLKDPDTQAVYHDMLWELRPRTIVELGVY-NGGSLAWFRDLTKIMGIDCQVIGIDRD-LSRCQIPA----SDMENITLHQ 135 (232)
T ss_dssp CCSCHHHHHHHHHHHHHHCCSEEEEECCT-TSHHHHHHHHHHHHTTCCCEEEEEESC-CTTCCCCG----GGCTTEEEEE
T ss_pred cccCHHHHHHHHHHHHHhCCCEEEEECCC-CchHHHHHHHHHHhcCCCceEEecCcC-hhhhhhhh----ccccceeeee
Confidence 35669999999999999999999999995 8999999987653 226999999999 75433221 2237899999
Q ss_pred cchh--hhhhhc-CCCccEEEEcCCCCCccHHHHHHH-HHhhcCCCCCCEEEEEecCC
Q 042616 100 GDAQ--KLLMGD-YRGADFVLIDCNIDIDGHKNVFRA-AKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 100 gda~--~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~-l~~~~~L~~~Ggviv~dNv~ 153 (220)
||+. +.+..+ ...+|+||+|+.+ .......+. +.+. |+ +||++|++|+.
T Consensus 136 gDs~~~~~~~~l~~~~~dlIfID~~H--~~~~v~~~~~~~~l--Lk-~GG~iIveD~i 188 (232)
T d2bm8a1 136 GDCSDLTTFEHLREMAHPLIFIDNAH--ANTFNIMKWAVDHL--LE-EGDYFIIEDMI 188 (232)
T ss_dssp CCSSCSGGGGGGSSSCSSEEEEESSC--SSHHHHHHHHHHHT--CC-TTCEEEECSCH
T ss_pred cccccHHHHHHHHhcCCCEEEEcCCc--chHHHHHHHHHhcc--cC-cCCEEEEEcCC
Confidence 9974 344443 3468999999998 444333333 3355 66 59999998875
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.37 E-value=1e-12 Score=105.72 Aligned_cols=110 Identities=13% Similarity=0.019 Sum_probs=87.1
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccC-CcEEEEEcchhhh
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYA-NCIEFVKGDAQKL 105 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~-~~Ve~v~gda~~~ 105 (220)
.++|...+...+.++|||+||| +|+.++.|+.. +.+|+++|.+ +.+++.|+++++ ++. .+++++.+|..+.
T Consensus 41 t~lLi~~l~~~~~~~VLDiGcG-~G~~~~~la~~----~~~v~~iD~s-~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~ 114 (194)
T d1dusa_ 41 TKILVENVVVDKDDDILDLGCG-YGVIGIALADE----VKSTTMADIN-RRAIKLAKENIKLNNLDNYDIRVVHSDLYEN 114 (194)
T ss_dssp HHHHHHHCCCCTTCEEEEETCT-TSHHHHHHGGG----SSEEEEEESC-HHHHHHHHHHHHHTTCTTSCEEEEECSTTTT
T ss_pred HHHHHHhCCcCCCCeEEEEeec-CChhHHHHHhh----ccccceeeec-cccchhHHHHHHHhCCccceEEEEEcchhhh
Confidence 4666666677889999999997 99999988864 5689999999 999999999997 554 4699999999876
Q ss_pred hhhcCCCccEEEEcCCCCCc--cHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 106 LMGDYRGADFVLIDCNIDID--GHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 106 L~~~~~~~D~VfiD~~k~~~--~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
++ .+.||+|+.+.+-... ....+++.+.+. |+| ||.+++
T Consensus 115 ~~--~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~--Lkp-gG~l~i 155 (194)
T d1dusa_ 115 VK--DRKYNKIITNPPIRAGKEVLHRIIEEGKEL--LKD-NGEIWV 155 (194)
T ss_dssp CT--TSCEEEEEECCCSTTCHHHHHHHHHHHHHH--EEE-EEEEEE
T ss_pred hc--cCCceEEEEcccEEecchhhhhHHHHHHHh--cCc-CcEEEE
Confidence 54 4789999999875211 235678888888 886 776543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.36 E-value=1.9e-12 Score=106.53 Aligned_cols=111 Identities=17% Similarity=0.184 Sum_probs=85.4
Q ss_pred HHHHHHHHh---hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh
Q 042616 29 GEFISALAA---GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL 105 (220)
Q Consensus 29 ~~~L~~La~---~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~ 105 (220)
..++..+.. ..++++||||||| +|..++.|++. +.+|++||++ +.+++.|++++.....+++++++|+.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~iLDiGcG-tG~~~~~l~~~----~~~v~gvD~s-~~mi~~a~~~~~~~~~~i~~~~~d~~~l 100 (251)
T d1wzna1 27 IDFVEEIFKEDAKREVRRVLDLACG-TGIPTLELAER----GYEVVGLDLH-EEMLRVARRKAKERNLKIEFLQGDVLEI 100 (251)
T ss_dssp HHHHHHHHHHTCSSCCCEEEEETCT-TCHHHHHHHHT----TCEEEEEESC-HHHHHHHHHHHHHTTCCCEEEESCGGGC
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCC-CCccchhhccc----ceEEEEEeec-cccccccccccccccccchheehhhhhc
Confidence 445555543 3456789999997 99999999874 6799999999 9999999999873223799999999885
Q ss_pred hhhcCCCccEEEEcCCC----CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 106 LMGDYRGADFVLIDCNI----DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 106 L~~~~~~~D~VfiD~~k----~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
- ..+.||+|++=... +..+....++.+.+. |+| ||+++++
T Consensus 101 ~--~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~--Lkp-gG~lii~ 144 (251)
T d1wzna1 101 A--FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEA--LKP-GGVFITD 144 (251)
T ss_dssp C--CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred c--cccccchHhhhhhhhhcCChHHHHHHHHHHHHH--cCC-CcEEEEE
Confidence 3 24789999974322 113456789999999 886 9988886
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.35 E-value=1.5e-12 Score=113.13 Aligned_cols=110 Identities=15% Similarity=0.054 Sum_probs=87.9
Q ss_pred HHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc--
Q 042616 34 ALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-- 109 (220)
Q Consensus 34 ~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-- 109 (220)
.+++..+.++|||++|| +|..++++|.. +.+|+++|.+ +.+++.|++|++ |+ ++++++++|+.+++..+
T Consensus 139 ~~~~~~~g~rVLDl~~g-tG~~s~~~a~g----~~~V~~vD~s-~~al~~a~~n~~~ngl-~~~~~i~~d~~~~~~~~~~ 211 (318)
T d1wxxa2 139 LYMERFRGERALDVFSY-AGGFALHLALG----FREVVAVDSS-AEALRRAEENARLNGL-GNVRVLEANAFDLLRRLEK 211 (318)
T ss_dssp HHGGGCCEEEEEEETCT-TTHHHHHHHHH----EEEEEEEESC-HHHHHHHHHHHHHTTC-TTEEEEESCHHHHHHHHHH
T ss_pred HHHHHhCCCeeeccCCC-CcHHHHHHHhc----CCcEEeecch-HHHHHHHHHHHHHcCC-CCcceeeccHHHHhhhhHh
Confidence 34556678999999996 99999988754 5789999999 999999999997 77 67999999998876543
Q ss_pred -CCCccEEEEcCCCCC----------ccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 110 -YRGADFVLIDCNIDI----------DGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 110 -~~~~D~VfiD~~k~~----------~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+.||+|++|++.-. ..|.+++..+.+. |+| ||+|+.-...
T Consensus 212 ~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~l--Lkp-GG~Lv~~scs 263 (318)
T d1wxxa2 212 EGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKL--LKE-GGILATASCS 263 (318)
T ss_dssp TTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHT--EEE-EEEEEEEECC
T ss_pred hhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHH--cCC-CCEEEEEeCC
Confidence 468999999987511 3456777788887 876 8888775443
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.34 E-value=2.3e-12 Score=112.20 Aligned_cols=113 Identities=16% Similarity=0.109 Sum_probs=90.2
Q ss_pred HHHhh-CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-
Q 042616 34 ALAAG-NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD- 109 (220)
Q Consensus 34 ~La~~-~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~- 109 (220)
.++.. .+.++|||+||| +|..++.+|.+- .++|+++|.+ +..++.|++|++ |+.++++++++|+.+.+..+
T Consensus 138 ~~~~~~~~g~~VLDl~~g-~G~~si~~a~~g---a~~V~~vD~s-~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~ 212 (324)
T d2as0a2 138 ALEKWVQPGDRVLDVFTY-TGGFAIHAAIAG---ADEVIGIDKS-PRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQ 212 (324)
T ss_dssp HHGGGCCTTCEEEETTCT-TTHHHHHHHHTT---CSEEEEEESC-HHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH
T ss_pred HHHhhcCCCCeeecccCc-ccchhhhhhhcC---CcEEEeecCC-HHHHHHHHHHHHHcCCCccceeeechhhhhhHHHH
Confidence 34443 457899999996 999999887641 3599999999 999999999997 77788999999998876543
Q ss_pred --CCCccEEEEcCCCCC----------ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 110 --YRGADFVLIDCNIDI----------DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 110 --~~~~D~VfiD~~k~~----------~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
..+||+|++|++... ..|.+++..+.+. |+| ||+|+.-+...
T Consensus 213 ~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~l--l~p-GG~lv~~s~s~ 266 (324)
T d2as0a2 213 KKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNL--VKD-GGILVTCSCSQ 266 (324)
T ss_dssp HTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTT--EEE-EEEEEEEECCT
T ss_pred hccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHH--cCC-CcEEEEEeCCc
Confidence 468999999998611 2578888888888 876 88888765443
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.33 E-value=4.2e-12 Score=107.26 Aligned_cols=116 Identities=12% Similarity=0.058 Sum_probs=92.2
Q ss_pred CChhHHHHHHHHHhh-CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 24 KEPDVGEFISALAAG-NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 24 ~~p~~~~~L~~La~~-~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
..|.+.-.|..|... .+.++|||+||| +|..++++++. +.+|++||.| +.+++.|++|++ ++ +++++++
T Consensus 103 ~H~TT~l~l~~l~~~~~~g~~VLDiGcG-sG~l~i~aa~~----g~~V~gvDis-~~av~~A~~na~~n~~--~~~~~~~ 174 (254)
T d2nxca1 103 HHETTRLALKALARHLRPGDKVLDLGTG-SGVLAIAAEKL----GGKALGVDID-PMVLPQAEANAKRNGV--RPRFLEG 174 (254)
T ss_dssp CSHHHHHHHHHHHHHCCTTCEEEEETCT-TSHHHHHHHHT----TCEEEEEESC-GGGHHHHHHHHHHTTC--CCEEEES
T ss_pred ccchhhHHHHHHHhhcCccCEEEEcccc-hhHHHHHHHhc----CCEEEEEECC-hHHHHHHHHHHHHcCC--ceeEEec
Confidence 455566666666664 456899999997 99999877652 6899999999 999999999997 55 4688999
Q ss_pred chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|..+.++. ++||+|+..... ....++++.+.+. |+| ||.++.-.++.
T Consensus 175 d~~~~~~~--~~fD~V~ani~~--~~l~~l~~~~~~~--Lkp-GG~lilSgil~ 221 (254)
T d2nxca1 175 SLEAALPF--GPFDLLVANLYA--ELHAALAPRYREA--LVP-GGRALLTGILK 221 (254)
T ss_dssp CHHHHGGG--CCEEEEEEECCH--HHHHHHHHHHHHH--EEE-EEEEEEEEEEG
T ss_pred cccccccc--cccchhhhcccc--ccHHHHHHHHHHh--cCC-CcEEEEEecch
Confidence 99887764 789999987665 6667888889998 886 88888755543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.32 E-value=3.5e-12 Score=107.73 Aligned_cols=107 Identities=12% Similarity=0.053 Sum_probs=86.0
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
..+..+||||||| +|..+..||+.. +.+|++||++ +.+++.|+++.. ++.++|+++++|+.++ |.-.++||+
T Consensus 65 l~~~~~vLDiGcG-~G~~~~~la~~~---~~~v~gvD~s-~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-~~~~~sfD~ 138 (282)
T d2o57a1 65 LQRQAKGLDLGAG-YGGAARFLVRKF---GVSIDCLNIA-PVQNKRNEEYNNQAGLADNITVKYGSFLEI-PCEDNSYDF 138 (282)
T ss_dssp CCTTCEEEEETCT-TSHHHHHHHHHH---CCEEEEEESC-HHHHHHHHHHHHHHTCTTTEEEEECCTTSC-SSCTTCEEE
T ss_pred CCCCCEEEEeCCC-CcHHHhhhhccC---CcEEEEEecc-chhhhhhhcccccccccccccccccccccc-cccccccch
Confidence 4567899999997 999999998753 5699999999 999999999986 8888999999999884 433578999
Q ss_pred EEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 116 VLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 116 VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|+.-.-- .-.+...+++.+.+. |+| ||.+++.+..
T Consensus 139 V~~~~~l~h~~d~~~~l~~~~~~--Lkp-gG~l~~~~~~ 174 (282)
T d2o57a1 139 IWSQDAFLHSPDKLKVFQECARV--LKP-RGVMAITDPM 174 (282)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHH--EEE-EEEEEEEEEE
T ss_pred hhccchhhhccCHHHHHHHHHHh--cCC-CcEEEEEEee
Confidence 9864322 225678899999999 887 7776665443
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=6.6e-12 Score=100.74 Aligned_cols=114 Identities=11% Similarity=0.011 Sum_probs=90.5
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~ 107 (220)
.+...|-......+|||++|| +|..++..+. ....+|+.||.| +..++.+++|++ +. ++++++.+|+.+++.
T Consensus 33 ~lfn~l~~~~~~~~vLDlfaG-sG~~gieals---rGa~~v~~VE~~-~~a~~~~k~N~~~~~~-~~~~ii~~d~~~~l~ 106 (183)
T d2fpoa1 33 TLFNWLAPVIVDAQCLDCFAG-SGALGLEALS---RYAAGATLIEMD-RAVSQQLIKNLATLKA-GNARVVNSNAMSFLA 106 (183)
T ss_dssp HHHHHHHHHHTTCEEEETTCT-TCHHHHHHHH---TTCSEEEEECSC-HHHHHHHHHHHHHTTC-CSEEEECSCHHHHHS
T ss_pred HHHhhhhcccchhhhhhhhcc-ccceeeeEEe---cCcceeEEEEEe-echhhHHHHHHhhccc-cceeeeeeccccccc
Confidence 344444445677899999996 9999885443 223589999999 999999999998 44 679999999999987
Q ss_pred hcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 108 GDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
....+||+||+|++-....+...++.+...++|.+ +|+|++.
T Consensus 107 ~~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~-~~iIiiE 148 (183)
T d2fpoa1 107 QKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLAD-EALIYVE 148 (183)
T ss_dssp SCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEE-EEEEEEE
T ss_pred ccccccCEEEEcCccccchHHHHHHHHHHCCCCCC-CeEEEEE
Confidence 65678999999998534678999999988765664 8888874
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.30 E-value=5.5e-12 Score=101.19 Aligned_cols=129 Identities=12% Similarity=0.068 Sum_probs=96.5
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhH
Q 042616 1 MSSWSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGD 80 (220)
Q Consensus 1 ~~~w~~e~a~~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~ 80 (220)
|..|+..-..+.|=.+ ..+ .+++.. +...++.+||||||| +|..+++|++. +-+|++||++ +.+
T Consensus 1 ~~~~d~~~~~~~~~~~-------~~~--~~~~~~-~~~~~~grvLDiGcG-~G~~~~~la~~----g~~v~gvD~s-~~~ 64 (198)
T d2i6ga1 1 MTVRDENYFTEKYGLT-------RTH--SDVLAA-AKVVAPGRTLDLGCG-NGRNSLYLAAN----GYDVTAWDKN-PAS 64 (198)
T ss_dssp CCCCSHHHHHHHHCBC-------CCC--HHHHHH-HTTSCSCEEEEETCT-TSHHHHHHHHT----TCEEEEEESC-HHH
T ss_pred CCcchHHHHhcccCCC-------CCH--HHHHHH-cccCCCCcEEEECCC-CCHHHHHHHHH----hhhhccccCc-HHH
Confidence 6677777666655222 112 245554 355677899999997 99999999973 6799999999 999
Q ss_pred HHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 81 IDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 81 ~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
++.|+++.+ ++ +++++..+|..+..+ .+.||+|+...-- +..+...+++.+.+. |+| ||+++...
T Consensus 65 l~~a~~~~~~~~~-~~~~~~~~d~~~~~~--~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~--L~p-gG~~~~~~ 134 (198)
T d2i6ga1 65 MANLERIKAAEGL-DNLQTDLVDLNTLTF--DGEYDFILSTVVMMFLEAQTIPGLIANMQRC--TKP-GGYNLIVA 134 (198)
T ss_dssp HHHHHHHHHHTTC-TTEEEEECCTTTCCC--CCCEEEEEEESCGGGSCTTHHHHHHHHHHHT--EEE-EEEEEEEE
T ss_pred HHHHHHHhhhccc-cchhhhheecccccc--cccccEEEEeeeeecCCHHHHHHHHHHHHHH--cCC-CcEEEEEE
Confidence 999999887 55 579999999888654 4789999975532 114567889999998 876 88777643
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.30 E-value=6.2e-12 Score=106.77 Aligned_cols=107 Identities=16% Similarity=0.146 Sum_probs=86.6
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
...++.+||||||| +|..++.|+...++ +++|++||.+ +.+++.|++++.....+++|+++|+.+. + ..++||+|
T Consensus 24 ~~~~~~~ILDiGcG-~G~~~~~la~~~~~-~~~v~giD~s-~~~l~~a~~~~~~~~~~~~f~~~d~~~~-~-~~~~fD~v 98 (281)
T d2gh1a1 24 KITKPVHIVDYGCG-YGYLGLVLMPLLPE-GSKYTGIDSG-ETLLAEARELFRLLPYDSEFLEGDATEI-E-LNDKYDIA 98 (281)
T ss_dssp CCCSCCEEEEETCT-TTHHHHHHTTTSCT-TCEEEEEECC-HHHHHHHHHHHHSSSSEEEEEESCTTTC-C-CSSCEEEE
T ss_pred ccCCcCEEEEecCc-CCHHHHHHHHhCCC-CCEEEEEecc-hhHhhhhhcccccccccccccccccccc-c-ccCCceEE
Confidence 35788999999997 99999999987766 7899999999 9999999999974434799999999874 3 24689999
Q ss_pred EEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 117 LIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 117 fiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+.-.-- .-.+....++.+.+. |+| ||.+++-.
T Consensus 99 ~~~~~l~~~~d~~~~l~~~~~~--Lkp-gG~lii~~ 131 (281)
T d2gh1a1 99 ICHAFLLHMTTPETMLQKMIHS--VKK-GGKIICFE 131 (281)
T ss_dssp EEESCGGGCSSHHHHHHHHHHT--EEE-EEEEEEEE
T ss_pred EEehhhhcCCCHHHHHHHHHHH--cCc-CcEEEEEE
Confidence 977643 114677899999998 887 77766544
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.30 E-value=3.5e-12 Score=105.29 Aligned_cols=114 Identities=14% Similarity=0.035 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHhhC--CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh
Q 042616 26 PDVGEFISALAAGN--NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ 103 (220)
Q Consensus 26 p~~~~~L~~La~~~--~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~ 103 (220)
++..+++..++... ++++||||||| +|..+..|++. +.+|++||.+ +++++.|++.+.....+++++++|+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~vLDiGCG-~G~~~~~l~~~----g~~v~GvD~S-~~ml~~A~~~~~~~~~~v~~~~~d~~ 94 (246)
T d1y8ca_ 21 KKWSDFIIEKCVENNLVFDDYLDLACG-TGNLTENLCPK----FKNTWAVDLS-QEMLSEAENKFRSQGLKPRLACQDIS 94 (246)
T ss_dssp HHHHHHHHHHHHTTTCCTTEEEEETCT-TSTTHHHHGGG----SSEEEEECSC-HHHHHHHHHHHHHTTCCCEEECCCGG
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEeCc-CCHHHHHHHHh----CCccEeeccc-hhhhhhccccccccCccceeeccchh
Confidence 45567777776553 46899999997 99999999874 6799999999 99999999988733247999999998
Q ss_pred hhhhhcCCCccEEEEcCCC-----CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 104 KLLMGDYRGADFVLIDCNI-----DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k-----~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++- +.++||+|+.=... ...+...+++.+.+. |+| ||.+++|
T Consensus 95 ~~~--~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~~i~~ 141 (246)
T d1y8ca_ 95 NLN--INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNH--LKE-GGVFIFD 141 (246)
T ss_dssp GCC--CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTT--EEE-EEEEEEE
T ss_pred hhc--ccccccccceeeeeeeccCCHHHHHHHHHHHHHh--CCC-CeEEEEE
Confidence 853 35789999963221 113445689999998 886 9998875
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.28 E-value=1.2e-11 Score=107.18 Aligned_cols=112 Identities=17% Similarity=0.124 Sum_probs=82.9
Q ss_pred HHHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCC-cEEEEEcchhhh
Q 042616 30 EFISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYAN-CIEFVKGDAQKL 105 (220)
Q Consensus 30 ~~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~-~Ve~v~gda~~~ 105 (220)
+++..++. ..++++||+++|| +|.+++.+|.+ +.+|++||.+ +.+++.|++|++ ++.+ +++++++|+.++
T Consensus 121 ~~~~~~~~~~~~~~rVLdlf~~-tG~~sl~aa~~----GA~V~~VD~s-~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~ 194 (309)
T d2igta1 121 EWLKNAVETADRPLKVLNLFGY-TGVASLVAAAA----GAEVTHVDAS-KKAIGWAKENQVLAGLEQAPIRWICEDAMKF 194 (309)
T ss_dssp HHHHHHHHHSSSCCEEEEETCT-TCHHHHHHHHT----TCEEEEECSC-HHHHHHHHHHHHHHTCTTSCEEEECSCHHHH
T ss_pred HHHHHHHhhccCCCeEEEecCC-CcHHHHHHHhC----CCeEEEEeCh-HHHHHHHHHhhhhhcccCCcEEEEeCCHHHh
Confidence 34444443 4568899999996 99999987764 6799999999 999999999998 6654 699999999998
Q ss_pred hhhc---CCCccEEEEcCCC---C-C------ccH-HHHHHHHHhhcCCCCCCEEEEE
Q 042616 106 LMGD---YRGADFVLIDCNI---D-I------DGH-KNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 106 L~~~---~~~~D~VfiD~~k---~-~------~~y-~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|... ...||+|++|++. . . ..| ...++.+..+ |.|+|+++++
T Consensus 195 l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~l--l~~~g~~ll~ 250 (309)
T d2igta1 195 IQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREI--LSPKALGLVL 250 (309)
T ss_dssp HHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHT--BCTTCCEEEE
T ss_pred HHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHh--cCCCCCEEEE
Confidence 8654 4689999999885 0 0 123 3344556666 7764444444
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.27 E-value=2.2e-11 Score=99.33 Aligned_cols=120 Identities=13% Similarity=0.158 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHhh--CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcc
Q 042616 26 PDVGEFISALAAG--NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGD 101 (220)
Q Consensus 26 p~~~~~L~~La~~--~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gd 101 (220)
+...+++..+++. .+..+|||+||| +|..|+.|++.+...+.+|++||++ +++++.|++.++ +...++++..+|
T Consensus 23 ~~~~~~i~~~~~~~~~~~~~vLDlGCG-tG~~~~~l~~~~~~~~~~v~giD~S-~~ml~~A~~~~~~~~~~~~~~~~~~d 100 (225)
T d1im8a_ 23 SNIITAIGMLAERFVTADSNVYDLGCS-RGAATLSARRNINQPNVKIIGIDNS-QPMVERCRQHIAAYHSEIPVEILCND 100 (225)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEESCT-TCHHHHHHHHTCCCSSCEEEEECSC-HHHHHHHHHHHHTSCCSSCEEEECSC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeccc-hhhHHHHHHHhhcCCCCceEEeCCC-HHHHHHHHHHhHhhcccchhhhccch
Confidence 3344555555553 456789999997 9999999998776558899999999 999999999886 445678999999
Q ss_pred hhhhhhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 102 AQKLLMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
..+. + .+.+|+++.-..- +..+...+++.+.+. |+| ||+++..+..
T Consensus 101 ~~~~-~--~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~--Lkp-gG~li~~~~~ 149 (225)
T d1im8a_ 101 IRHV-E--IKNASMVILNFTLQFLPPEDRIALLTKIYEG--LNP-NGVLVLSEKF 149 (225)
T ss_dssp TTTC-C--CCSEEEEEEESCGGGSCGGGHHHHHHHHHHH--EEE-EEEEEEEEEC
T ss_pred hhcc-c--cccceeeEEeeeccccChhhHHHHHHHHHHh--CCC-Cceeeccccc
Confidence 8764 2 3678988865322 114667899999999 987 7766665443
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.26 E-value=2e-11 Score=106.09 Aligned_cols=119 Identities=12% Similarity=0.044 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccC-CcEEEEEcc
Q 042616 26 PDVGEFISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYA-NCIEFVKGD 101 (220)
Q Consensus 26 p~~~~~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~-~~Ve~v~gd 101 (220)
.++-+.-..+++ ..+.++|||++|| +|.++++++.+- ..+|++||.+ +..++.|++|++ ++. ++++++++|
T Consensus 129 lDqR~~r~~l~~~~~~g~~VLdlf~~-~G~~sl~aa~~g---a~~V~~vD~s-~~a~~~a~~N~~~n~l~~~~~~~i~~d 203 (317)
T d2b78a2 129 LDQRQVRNELINGSAAGKTVLNLFSY-TAAFSVAAAMGG---AMATTSVDLA-KRSRALSLAHFEANHLDMANHQLVVMD 203 (317)
T ss_dssp GGGHHHHHHHHHTTTBTCEEEEETCT-TTHHHHHHHHTT---BSEEEEEESC-TTHHHHHHHHHHHTTCCCTTEEEEESC
T ss_pred HHHHHHHHHHHHHhhCCCceeecCCC-CcHHHHHHHhCC---CceEEEecCC-HHHHHHHHHHHHHhcccCcceEEEEcc
Confidence 444444344433 4567899999996 999998877531 3589999999 999999999997 663 679999999
Q ss_pred hhhhhhhc---CCCccEEEEcCCCCC----------ccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 102 AQKLLMGD---YRGADFVLIDCNIDI----------DGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 102 a~~~L~~~---~~~~D~VfiD~~k~~----------~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+.+.|+.+ ..+||+|++|++.-. ..|.++++.+.+. |+| ||+|++-..
T Consensus 204 ~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~l--l~p-gG~l~~~sc 264 (317)
T d2b78a2 204 VFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEI--LSE-NGLIIASTN 264 (317)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHT--EEE-EEEEEEEEC
T ss_pred HHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHH--cCC-CCEEEEEeC
Confidence 99988654 358999999988410 2578888888888 876 888877543
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.25 E-value=8.9e-12 Score=105.50 Aligned_cols=101 Identities=12% Similarity=0.082 Sum_probs=83.3
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
..+.++|||+||| +|+.++.+|... .++|++||.| |.+++.+++|++ ++.++|++++||+.++++. ..||.
T Consensus 105 ~~~g~~VlD~~aG-~G~~~l~~a~~~---~~~V~avd~n-~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~--~~~D~ 177 (260)
T d2frna1 105 AKPDELVVDMFAG-IGHLSLPIAVYG---KAKVIAIEKD-PYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE--NIADR 177 (260)
T ss_dssp CCTTCEEEETTCT-TTTTHHHHHHHT---CCEEEEECCC-HHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC--SCEEE
T ss_pred cCCccEEEECcce-EcHHHHHHHHhC---CcEEEEecCC-HHHHHHHHHHHHHhCCCceEEEEEcchHHhccC--CCCCE
Confidence 3568999999997 999999888641 4699999999 999999999998 8888999999999997653 68999
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
|+++.+. . ..++++.+... |++ ||+|..+.
T Consensus 178 Ii~~~p~--~-~~~~l~~a~~~--l~~-gG~lh~~~ 207 (260)
T d2frna1 178 ILMGYVV--R-THEFIPKALSI--AKD-GAIIHYHN 207 (260)
T ss_dssp EEECCCS--S-GGGGHHHHHHH--EEE-EEEEEEEE
T ss_pred EEECCCC--c-hHHHHHHHHhh--cCC-CCEEEEEe
Confidence 9999876 2 34566777777 654 99886654
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.25 E-value=2.7e-11 Score=97.24 Aligned_cols=112 Identities=19% Similarity=0.167 Sum_probs=83.9
Q ss_pred HHHHHHHHh--hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhh
Q 042616 29 GEFISALAA--GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLL 106 (220)
Q Consensus 29 ~~~L~~La~--~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L 106 (220)
.+.|..++. ..+..+||||||| +|..|..|+.- +.+|++||++ +.+++.|++++.....++.++++|+.++
T Consensus 24 ~~~~~~~~~~~l~~~~~ILDiGcG-~G~~~~~la~~----~~~v~giD~S-~~~i~~ak~~~~~~~~~~~~~~~d~~~l- 96 (226)
T d1ve3a1 24 IETLEPLLMKYMKKRGKVLDLACG-VGGFSFLLEDY----GFEVVGVDIS-EDMIRKAREYAKSRESNVEFIVGDARKL- 96 (226)
T ss_dssp HHHHHHHHHHSCCSCCEEEEETCT-TSHHHHHHHHT----TCEEEEEESC-HHHHHHHHHHHHHTTCCCEEEECCTTSC-
T ss_pred HHHHHHHHHHhcCCCCEEEEECCC-cchhhhhHhhh----hccccccccc-ccchhhhhhhhccccccccccccccccc-
Confidence 444444443 2455799999997 99999999862 7899999999 9999999998873335688999999884
Q ss_pred hhcCCCccEEEEcCCCC---CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 107 MGDYRGADFVLIDCNID---IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~k~---~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.-.++||+|+.-.--. ..+....++.+.+. |+| ||.+++.
T Consensus 97 ~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~--Lkp-gG~lii~ 140 (226)
T d1ve3a1 97 SFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRV--LKP-SGKFIMY 140 (226)
T ss_dssp CSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred cccCcCceEEEEecchhhCChhHHHHHHHHHHHH--cCc-CcEEEEE
Confidence 44357899998654331 12455679999999 887 8876665
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.22 E-value=1.9e-11 Score=95.74 Aligned_cols=117 Identities=15% Similarity=0.014 Sum_probs=89.0
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--cc---------
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RY--------- 91 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~--------- 91 (220)
.+.|..-+++..| ...++.+|||+||| +|..+++||.. |.+|++||++ +.+++.|++..+ +.
T Consensus 4 ~~~~~~~~~~~~l-~~~~~~rvLd~GCG-~G~~a~~la~~----G~~V~gvD~S-~~~i~~a~~~~~~~~~~~~~~~~~~ 76 (201)
T d1pjza_ 4 EVNKDLQQYWSSL-NVVPGARVLVPLCG-KSQDMSWLSGQ----GYHVVGAELS-EAAVERYFTERGEQPHITSQGDFKV 76 (201)
T ss_dssp SSTHHHHHHHHHH-CCCTTCEEEETTTC-CSHHHHHHHHH----CCEEEEEEEC-HHHHHHHHHHHCSCSEEEEETTEEE
T ss_pred hHHHHHHHHHHHc-CCCCCCEEEEecCc-CCHHHHHHHHc----CCceEeeccc-HHHHHHHHHHhccccchhhhhhhhh
Confidence 4567777788877 56778899999997 99999999984 8899999999 999999999875 11
Q ss_pred --CCcEEEEEcchhhhhhhcCCCccEEEEcCCCC---CccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 92 --ANCIEFVKGDAQKLLMGDYRGADFVLIDCNID---IDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 92 --~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~---~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
...++++++|..+.-+.....||+|+.-..-. ..++..+++.+.+. |+| ||.++.
T Consensus 77 ~~~~~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~--Lkp-gG~l~l 136 (201)
T d1pjza_ 77 YAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEAL--MPQ-ACSGLL 136 (201)
T ss_dssp EECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHH--SCS-EEEEEE
T ss_pred ccccccceecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHh--cCC-CcEEEE
Confidence 24468899998875544346899997543320 12456788999998 886 776544
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.21 E-value=5.9e-11 Score=94.11 Aligned_cols=102 Identities=9% Similarity=-0.010 Sum_probs=72.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhh---cCCCc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMG---DYRGA 113 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~---~~~~~ 113 (220)
.+..+|||+||| +|..++.++. . +.++++||.| +++++.+++|++ ++.+++.. .++..+++. ...+|
T Consensus 40 ~~g~~vLDl~~G-~G~~~i~a~~---~-ga~vv~vD~~-~~a~~~~~~N~~~~~~~~~v~~--~~~d~~~~~~~~~~~~f 111 (171)
T d1ws6a1 40 PRRGRFLDPFAG-SGAVGLEAAS---E-GWEAVLVEKD-PEAVRLLKENVRRTGLGARVVA--LPVEVFLPEAKAQGERF 111 (171)
T ss_dssp TTCCEEEEETCS-SCHHHHHHHH---T-TCEEEEECCC-HHHHHHHHHHHHHHTCCCEEEC--SCHHHHHHHHHHTTCCE
T ss_pred cCCCeEEEeccc-cchhhhhhhh---c-cchhhhcccC-HHHHhhhhHHHHhhccccceee--eehhcccccccccCCcc
Confidence 567899999997 8988875443 3 7899999999 999999999998 66555544 555444322 24689
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+||+|++-. .++.+.+..+...++|+ +||+++..
T Consensus 112 D~If~DPPY~-~~~~~~l~~l~~~~ll~-~~g~ivie 146 (171)
T d1ws6a1 112 TVAFMAPPYA-MDLAALFGELLASGLVE-AGGLYVLQ 146 (171)
T ss_dssp EEEEECCCTT-SCTTHHHHHHHHHTCEE-EEEEEEEE
T ss_pred ceeEEccccc-cCHHHHHHHHHHcCCcC-CCeEEEEE
Confidence 9999999742 23444555554434365 58888874
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.19 E-value=7.4e-11 Score=97.91 Aligned_cols=104 Identities=12% Similarity=-0.025 Sum_probs=83.0
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhh--hhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLL--MGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L--~~~~~~~D~ 115 (220)
..+..+|||+||| +|++|..||....+ .|+|+++|++ +.+++.++++.+.. .++..+.+|+.... +.....+|+
T Consensus 71 i~pG~~VLDlGaG-sG~~t~~la~~VG~-~G~V~aVD~s-~~~l~~a~~~a~~~-~~~~~i~~d~~~~~~~~~~~~~vD~ 146 (227)
T d1g8aa_ 71 IKPGKSVLYLGIA-SGTTASHVSDIVGW-EGKIFGIEFS-PRVLRELVPIVEER-RNIVPILGDATKPEEYRALVPKVDV 146 (227)
T ss_dssp CCTTCEEEEETTT-STTHHHHHHHHHCT-TSEEEEEESC-HHHHHHHHHHHSSC-TTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred cCCCCEEEEeccC-CCHHHHHHHHHhCC-CCEEEEEeCc-HHHHHHHHHHHHhc-CCceEEEEECCCcccccccccceEE
Confidence 4567899999996 99999999999876 8999999999 99999999998754 56888888875432 222478999
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
||.|... ..+....++.+.+. |+| ||.++.
T Consensus 147 i~~d~~~-~~~~~~~l~~~~~~--Lkp-gG~lvi 176 (227)
T d1g8aa_ 147 IFEDVAQ-PTQAKILIDNAEVY--LKR-GGYGMI 176 (227)
T ss_dssp EEECCCS-TTHHHHHHHHHHHH--EEE-EEEEEE
T ss_pred EEEEccc-cchHHHHHHHHHHh--ccc-CCeEEE
Confidence 9999876 24556778999988 887 666544
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.17 E-value=4.7e-11 Score=97.02 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=79.2
Q ss_pred HHHHHHHh--hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAA--GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~--~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~ 107 (220)
+++..+.. ..++.+|||+||| +|..+..|+.. +.+|++||++ +++++.|+++.. ..++.+|+.+ ++
T Consensus 30 ~~~~~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~----~~~v~giD~s-~~~l~~a~~~~~-----~~~~~~~~~~-l~ 97 (246)
T d2avna1 30 RLIGSFLEEYLKNPCRVLDLGGG-TGKWSLFLQER----GFEVVLVDPS-KEMLEVAREKGV-----KNVVEAKAED-LP 97 (246)
T ss_dssp HHHHHHHHHHCCSCCEEEEETCT-TCHHHHHHHTT----TCEEEEEESC-HHHHHHHHHHTC-----SCEEECCTTS-CC
T ss_pred HHHHHHHHHhcCCCCEEEEECCC-Cchhccccccc----ceEEEEeecc-cccccccccccc-----cccccccccc-cc
Confidence 44444443 3356899999997 99999999863 7799999999 999999998742 2367789887 44
Q ss_pred hcCCCccEEEEcCCC--CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 108 GDYRGADFVLIDCNI--DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k--~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
...+.||+|+.-... ...+....++.+.+. |+| ||++++.
T Consensus 98 ~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~--Lk~-gG~~ii~ 139 (246)
T d2avna1 98 FPSGAFEAVLALGDVLSYVENKDKAFSEIRRV--LVP-DGLLIAT 139 (246)
T ss_dssp SCTTCEEEEEECSSHHHHCSCHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred cccccccceeeecchhhhhhhHHHHHHHHHhh--cCc-CcEEEEE
Confidence 335789999853321 114677889999998 886 8888775
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.15 E-value=1.1e-10 Score=95.29 Aligned_cols=103 Identities=11% Similarity=-0.007 Sum_probs=80.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CCCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~~~D~ 115 (220)
++...||||||| .|.+++.||..-+ +..+++||.+ +..++.|.+.++ ++ +||.++++|+.+++..+ .+.+|.
T Consensus 28 ~~~PlvLeIGcG-~G~~~~~lA~~~p--~~~~iGiD~~-~~~i~~a~~~~~~~~l-~Nv~~~~~Da~~l~~~~~~~~~d~ 102 (204)
T d2fcaa1 28 NDNPIHIEVGTG-KGQFISGMAKQNP--DINYIGIELF-KSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKR 102 (204)
T ss_dssp SCCCEEEEECCT-TSHHHHHHHHHCT--TSEEEEECSC-HHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCE
T ss_pred CCCceEEEEEec-CcHHHHHHHHhCC--CCcEEEeecc-hHHHHHHHHHHHHHhc-cCchhcccchhhhhcccCchhhhc
Confidence 344579999997 9999999998754 6899999999 999999988886 66 68999999998876443 467998
Q ss_pred EEEcCCCCC--c-------cHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 116 VLIDCNIDI--D-------GHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 116 VfiD~~k~~--~-------~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|++-.+..- . -....++.+.+. |+| ||.|..
T Consensus 103 v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~--Lkp-gG~l~i 142 (204)
T d2fcaa1 103 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEV--MGK-GGSIHF 142 (204)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHH--HTT-SCEEEE
T ss_pred cccccccccchhhhcchhhhHHHHHHHHHHh--CCC-CcEEEE
Confidence 887654410 1 125789999998 887 676543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.15 E-value=9.9e-11 Score=95.76 Aligned_cols=104 Identities=12% Similarity=0.007 Sum_probs=82.0
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhh--hhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLL--MGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L--~~~~~~~D~ 115 (220)
..+..+|||+||| +|+++..||...+ .|+|++||.+ +.+++.|++..+.. ++++++.+|+...- +.....+|+
T Consensus 54 lkpg~~VLDlGcG-~G~~~~~la~~v~--~g~V~gvDis-~~~i~~a~~~a~~~-~ni~~i~~d~~~~~~~~~~~~~vd~ 128 (209)
T d1nt2a_ 54 LRGDERVLYLGAA-SGTTVSHLADIVD--EGIIYAVEYS-AKPFEKLLELVRER-NNIIPLLFDASKPWKYSGIVEKVDL 128 (209)
T ss_dssp CCSSCEEEEETCT-TSHHHHHHHHHTT--TSEEEEECCC-HHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred CCCCCEEEEeCCc-CCHHHHHHHHhcc--CCeEEEEeCC-HHHHHHHHHHhhcc-CCceEEEeeccCccccccccceEEE
Confidence 4567899999997 9999999999875 4799999999 99999999988754 58999999987642 122457899
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEE-EEe
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVI-VGY 150 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggvi-v~d 150 (220)
+|.|-.. ..+....++.+.+. |+| ||.+ +++
T Consensus 129 v~~~~~~-~~~~~~~l~~~~~~--Lkp-gG~l~i~~ 160 (209)
T d1nt2a_ 129 IYQDIAQ-KNQIEILKANAEFF--LKE-KGEVVIMV 160 (209)
T ss_dssp EEECCCS-TTHHHHHHHHHHHH--EEE-EEEEEEEE
T ss_pred EEecccC-hhhHHHHHHHHHHH--hcc-CCeEEEEE
Confidence 9998654 14556778889988 887 6654 444
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=4e-11 Score=97.68 Aligned_cols=109 Identities=13% Similarity=0.023 Sum_probs=80.9
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
..+..+||||||| +|..+..|+.. ...+|++||++ +++++.||+++. +. .+++|+++|+.++. ...++||+
T Consensus 58 ~~~~~~vLDiGcG-~G~~~~~l~~~---~~~~v~~vD~s-~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~-~~~~~fD~ 130 (222)
T d2ex4a1 58 KTGTSCALDCGAG-IGRITKRLLLP---LFREVDMVDIT-EDFLVQAKTYLGEEGK-RVRNYFCCGLQDFT-PEPDSYDV 130 (222)
T ss_dssp CCCCSEEEEETCT-TTHHHHHTTTT---TCSEEEEEESC-HHHHHHHHHHTGGGGG-GEEEEEECCGGGCC-CCSSCEEE
T ss_pred CCCCCEEEEeccC-CCHhhHHHHHh---cCCEEEEeecC-HHHhhccccccccccc-cccccccccccccc-cccccccc
Confidence 4566899999997 99988877532 25689999999 999999999987 44 57899999999854 22578999
Q ss_pred EEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 116 VLIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 116 VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|+.-.-... .+...+++.+.+. |+|.|-+++.+++...
T Consensus 131 I~~~~~l~h~~~~~~~~~l~~i~~~--Lk~~G~~~i~~~~~~~ 171 (222)
T d2ex4a1 131 IWIQWVIGHLTDQHLAEFLRRCKGS--LRPNGIIVIKDNMAQE 171 (222)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHH--EEEEEEEEEEEEEBSS
T ss_pred cccccccccchhhhhhhHHHHHHHh--cCCcceEEEEEccccc
Confidence 997654411 2234689999999 8874444555554443
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=2.9e-10 Score=93.08 Aligned_cols=118 Identities=8% Similarity=-0.035 Sum_probs=92.2
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-------------
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG------------- 89 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~------------- 89 (220)
-..|..-+++..+....+..+|||+||| .|..+++||.. |-+||+||.+ +++++.|++...
T Consensus 28 ~~~~~l~~~~~~~l~~~~~~rvLd~GCG-~G~~a~~LA~~----G~~V~gvD~S-~~ai~~a~~~~~~~~~~~~~~~~~~ 101 (229)
T d2bzga1 28 QGHQLLKKHLDTFLKGKSGLRVFFPLCG-KAVEMKWFADR----GHSVVGVEIS-ELGIQEFFTEQNLSYSEEPITEIPG 101 (229)
T ss_dssp TCCHHHHHHHHHHHTTCCSCEEEETTCT-TCTHHHHHHHT----TCEEEEECSC-HHHHHHHHHHTTCCEEEEECTTSTT
T ss_pred CCCHHHHHHHHHhcCCCCCCEEEEeCCC-CcHHHHHHHhC----CCcEEEEeCC-HHHHHHHHHHhhccccccchhcccc
Confidence 3556667888888888888999999997 99999999973 7899999999 999999988653
Q ss_pred -----ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 90 -----RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 90 -----g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
....+++++++|..+.-+.....||+|+.-+-- .......+++.+.+. |+| ||.++.
T Consensus 102 ~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~--Lkp-gG~~~l 166 (229)
T d2bzga1 102 TKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSL--LGK-KFQYLL 166 (229)
T ss_dssp CEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHT--EEE-EEEEEE
T ss_pred cceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhh--cCC-cceEEE
Confidence 113579999999988766556789999754322 124568899999998 886 775443
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.13 E-value=8.7e-11 Score=95.92 Aligned_cols=105 Identities=12% Similarity=0.124 Sum_probs=80.9
Q ss_pred HHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCC
Q 042616 32 ISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYR 111 (220)
Q Consensus 32 L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~ 111 (220)
+.++..-.++++||||||| +|..+..|+.. +.+|++||++ +++++.||+.+. ++++++++++.+..+ .+
T Consensus 12 ~~~~~~~~~~~~VLDiGcG-~G~~~~~l~~~----g~~v~giD~s-~~~i~~a~~~~~---~~~~~~~~~~~~~~~--~~ 80 (225)
T d2p7ia1 12 VRAFTPFFRPGNLLELGSF-KGDFTSRLQEH----FNDITCVEAS-EEAISHAQGRLK---DGITYIHSRFEDAQL--PR 80 (225)
T ss_dssp HHHHGGGCCSSCEEEESCT-TSHHHHHHTTT----CSCEEEEESC-HHHHHHHHHHSC---SCEEEEESCGGGCCC--SS
T ss_pred HHHhhhhCCCCcEEEEeCC-CcHHHHHHHHc----CCeEEEEeCc-HHHhhhhhcccc---ccccccccccccccc--cc
Confidence 4556666788999999997 99999888753 6789999999 999999998764 569999999988543 57
Q ss_pred CccEEEEcCCC-CCccHHHHHHHHH-hhcCCCCCCEEEEEe
Q 042616 112 GADFVLIDCNI-DIDGHKNVFRAAK-ESVMHGSGAGVIVGY 150 (220)
Q Consensus 112 ~~D~VfiD~~k-~~~~y~~~l~~l~-~~~~L~~~Ggviv~d 150 (220)
+||+|+.-.-- .-.+....+..+. +. |+| ||.++..
T Consensus 81 ~fD~I~~~~vleh~~d~~~~l~~i~~~~--Lk~-gG~l~i~ 118 (225)
T d2p7ia1 81 RYDNIVLTHVLEHIDDPVALLKRINDDW--LAE-GGRLFLV 118 (225)
T ss_dssp CEEEEEEESCGGGCSSHHHHHHHHHHTT--EEE-EEEEEEE
T ss_pred ccccccccceeEecCCHHHHHHHHHHHh--cCC-CceEEEE
Confidence 89999975533 1145567777776 45 665 8887764
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.11 E-value=1.4e-10 Score=96.29 Aligned_cols=104 Identities=10% Similarity=-0.019 Sum_probs=79.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+.++|||+||| +|..+..++.. ..++|++||++ +++++.|++... +...++.+.++|+.........+||+|
T Consensus 23 ~~~~~VLDlGCG-~G~~~~~~~~~---~~~~v~GiD~S-~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V 97 (252)
T d1ri5a_ 23 KRGDSVLDLGCG-KGGDLLKYERA---GIGEYYGVDIA-EVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVI 97 (252)
T ss_dssp CTTCEEEEETCT-TTTTHHHHHHH---TCSEEEEEESC-HHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCcCEEEEeccc-CcHHHHHHHHc---CCCeEEEecCC-HHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEE
Confidence 466899999997 99888888875 14689999999 999999998876 444679999999865432335689999
Q ss_pred EEcCCCCC-----ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 117 LIDCNIDI-----DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 117 fiD~~k~~-----~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.-..-.. .+...+++.+.+. |+| ||+++++
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~i~~~--Lk~-gG~~i~~ 133 (252)
T d1ri5a_ 98 SSQFSFHYAFSTSESLDIAQRNIARH--LRP-GGYFIMT 133 (252)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHT--EEE-EEEEEEE
T ss_pred EEcceeeecCCCHHHHHHHHHHHhce--eCC-CCEEEEE
Confidence 87654310 1234678888888 876 9998874
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.11 E-value=1.1e-10 Score=97.69 Aligned_cols=114 Identities=12% Similarity=0.130 Sum_probs=83.3
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~ 109 (220)
.||..+ ...+..+|||+||| +|..|..|+.-. ..+|++||++ +.+++.||+.+.+. .+++++++|++++-+.
T Consensus 84 ~fl~~l-~~~~~~~vLD~GcG-~G~~t~~ll~~~---~~~v~~vD~s-~~~l~~a~~~~~~~-~~~~~~~~d~~~~~~~- 155 (254)
T d1xtpa_ 84 NFIASL-PGHGTSRALDCGAG-IGRITKNLLTKL---YATTDLLEPV-KHMLEEAKRELAGM-PVGKFILASMETATLP- 155 (254)
T ss_dssp HHHHTS-TTCCCSEEEEETCT-TTHHHHHTHHHH---CSEEEEEESC-HHHHHHHHHHTTTS-SEEEEEESCGGGCCCC-
T ss_pred HHHhhC-CCCCCCeEEEeccc-CChhhHHHHhhc---CceEEEEcCC-HHHHHhhhcccccc-ccceeEEccccccccC-
Confidence 444433 34567899999997 999999877543 4589999999 99999999998754 5699999999886432
Q ss_pred CCCccEEEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEE-EEEecCCC
Q 042616 110 YRGADFVLIDCNIDI---DGHKNVFRAAKESVMHGSGAGV-IVGYNALP 154 (220)
Q Consensus 110 ~~~~D~VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggv-iv~dNv~~ 154 (220)
.+.||+|+.-.--.. .+...+++.+.+. |+| ||. ++.+|+..
T Consensus 156 ~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~--Lkp-gG~iii~e~~~~ 201 (254)
T d1xtpa_ 156 PNTYDLIVIQWTAIYLTDADFVKFFKHCQQA--LTP-NGYIFFKENCST 201 (254)
T ss_dssp SSCEEEEEEESCGGGSCHHHHHHHHHHHHHH--EEE-EEEEEEEEEBC-
T ss_pred CCccceEEeeccccccchhhhHHHHHHHHHh--cCC-CcEEEEEecCCC
Confidence 478999997654411 2235779999998 887 555 45555543
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.09 E-value=4.7e-10 Score=89.61 Aligned_cols=116 Identities=11% Similarity=0.034 Sum_probs=90.1
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccC-CcEEEEEcchhhh
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYA-NCIEFVKGDAQKL 105 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~-~~Ve~v~gda~~~ 105 (220)
..+...|.......+|||+.+| +|..++..+ ..-..+|+.||.| +..++..++|++ +.. ....++..|+.+.
T Consensus 32 ealFn~l~~~~~~~~vLDlFaG-sG~~glEal---SRGA~~v~fVE~~-~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~ 106 (183)
T d2ifta1 32 ETLFNWLMPYIHQSECLDGFAG-SGSLGFEAL---SRQAKKVTFLELD-KTVANQLKKNLQTLKCSSEQAEVINQSSLDF 106 (183)
T ss_dssp HHHHHHHHHHHTTCEEEETTCT-TCHHHHHHH---HTTCSEEEEECSC-HHHHHHHHHHHHHTTCCTTTEEEECSCHHHH
T ss_pred HHHHHHhhhhcccceEeecccC-ccceeeeee---eecceeeEEeecc-cchhhhHhhHHhhhccccccccccccccccc
Confidence 4555666555677899999986 899888433 3324589999999 999999999998 443 3588899999888
Q ss_pred hhhc--CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 106 LMGD--YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 106 L~~~--~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+... ..+||+||+|++-....+...++.+...+.|. ++|+|++.
T Consensus 107 l~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~-~~~liiiE 152 (183)
T d2ifta1 107 LKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLK-PNALIYVE 152 (183)
T ss_dssp TTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEE-EEEEEEEE
T ss_pred ccccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcC-CCcEEEEE
Confidence 7543 35699999999975566889999998866565 59999986
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.08 E-value=3.4e-10 Score=96.35 Aligned_cols=110 Identities=5% Similarity=-0.035 Sum_probs=86.0
Q ss_pred HHHHH---hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhh
Q 042616 32 ISALA---AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLL 106 (220)
Q Consensus 32 L~~La---~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L 106 (220)
+..++ ...+.++||||||| .|..++.+++.. +.+|++|+.+ ++.++.|++.++ ++..++++...|..+.
T Consensus 41 ~~~~~~~l~l~~g~~VLDiGCG-~G~~a~~~a~~~---g~~v~gi~ls-~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~- 114 (280)
T d2fk8a1 41 VDLNLDKLDLKPGMTLLDIGCG-WGTTMRRAVERF---DVNVIGLTLS-KNQHARCEQVLASIDTNRSRQVLLQGWEDF- 114 (280)
T ss_dssp HHHHHTTSCCCTTCEEEEESCT-TSHHHHHHHHHH---CCEEEEEESC-HHHHHHHHHHHHTSCCSSCEEEEESCGGGC-
T ss_pred HHHHHHHcCCCCCCEEEEecCC-chHHHHHHHHhC---ceeEEEecch-HHHHHHHHHHHHhhccccchhhhhhhhhhh-
Confidence 44444 45668999999997 899998888653 6799999999 999999999886 7778899999987653
Q ss_pred hhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 107 MGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.++||.|+.-.-- ...+|..+|+.+.+. |+| ||.++...+.
T Consensus 115 ---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~--Lkp-gG~~~i~~i~ 158 (280)
T d2fk8a1 115 ---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNI--MPA-DGRMTVQSSV 158 (280)
T ss_dssp ---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHH--SCT-TCEEEEEEEE
T ss_pred ---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhc--cCC-CceEEEEEee
Confidence 3689999744322 115678999999999 987 8887776443
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.08 E-value=2.3e-10 Score=99.06 Aligned_cols=109 Identities=14% Similarity=0.083 Sum_probs=85.8
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----c--cCCcEEEEEcchhhhhhh
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----R--YANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g--~~~~Ve~v~gda~~~L~~ 108 (220)
++...+|++||.||.| .|.++.++++. + ...+|++||+| ++.++.|++++. + -..+++++.+|+.+++..
T Consensus 72 l~~~~~pk~VLiiG~G-~G~~~~~ll~~-~-~~~~v~~VEiD-~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~ 147 (312)
T d1uira_ 72 MLTHPEPKRVLIVGGG-EGATLREVLKH-P-TVEKAVMVDID-GELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER 147 (312)
T ss_dssp HHHSSCCCEEEEEECT-TSHHHHHHTTS-T-TCCEEEEEESC-HHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH
T ss_pred hhhCCCcceEEEeCCC-chHHHHHHHhc-C-CcceEEEecCC-HHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh
Confidence 3445678999999975 78777766642 2 26799999999 999999999984 2 246799999999999987
Q ss_pred cCCCccEEEEcCCCCC-------ccH-HHHHHHHHhhcCCCCCCEEEEEe
Q 042616 109 DYRGADFVLIDCNIDI-------DGH-KNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 109 ~~~~~D~VfiD~~k~~-------~~y-~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
....||+|++|..... ..| .++++.+.+. |+| ||++++.
T Consensus 148 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~--L~p-~Gvlv~~ 194 (312)
T d1uira_ 148 TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAH--LNP-GGVMGMQ 194 (312)
T ss_dssp CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHT--EEE-EEEEEEE
T ss_pred cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHh--cCC-CceEEEe
Confidence 6778999999984310 123 6789999999 876 9998874
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=7.3e-10 Score=93.70 Aligned_cols=118 Identities=14% Similarity=0.072 Sum_probs=86.6
Q ss_pred ChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccC---CcEEEEE
Q 042616 25 EPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYA---NCIEFVK 99 (220)
Q Consensus 25 ~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~---~~Ve~v~ 99 (220)
.....++|..+....+.++|||+||| +|..++.||+. +.+|++||.+ +++++.|+++.. +.. .+..+..
T Consensus 41 ~~~~~~~l~~~l~~~~~~~vLD~GcG-~G~~~~~la~~----g~~v~gvD~S-~~ml~~A~~~~~~~~~~~~~~~~~~~~ 114 (292)
T d1xvaa_ 41 TAEYKAWLLGLLRQHGCHRVLDVACG-TGVDSIMLVEE----GFSVTSVDAS-DKMLKYALKERWNRRKEPAFDKWVIEE 114 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSCT-TSHHHHHHHHT----TCEEEEEESC-HHHHHHHHHHHHHTTTSHHHHTCEEEE
T ss_pred HHHHHHHHHHHhhhcCCCEEEEecCC-CcHHHHHHHHc----CCeeeeccCc-hHHHHHHHHHHHhcccccccceeeeee
Confidence 34456788888888889999999997 99999999874 5699999999 999999999875 221 2345556
Q ss_pred cchhhhhhhc--CCCccEEEEcCCC---------CCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 100 GDAQKLLMGD--YRGADFVLIDCNI---------DIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 100 gda~~~L~~~--~~~~D~VfiD~~k---------~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
.+....-... .+.||+|+.-+.. +..+....++.+.+. |+| ||++|++.
T Consensus 115 ~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~li~~~ 174 (292)
T d1xvaa_ 115 ANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASM--VRP-GGLLVIDH 174 (292)
T ss_dssp CCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHT--EEE-EEEEEEEE
T ss_pred ccccccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHH--cCc-CcEEEEee
Confidence 6654432111 4689999875422 012355689999998 886 99998863
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.06 E-value=9.3e-10 Score=89.25 Aligned_cols=105 Identities=13% Similarity=0.168 Sum_probs=80.3
Q ss_pred hHHHHHHHHhc--------CCCCCChhHHHHHHHHHhhC---CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCc
Q 042616 9 ATKAYLQALKM--------GKRGKEPDVGEFISALAAGN---NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGV 77 (220)
Q Consensus 9 a~~aY~~~l~~--------~~~~~~p~~~~~L~~La~~~---~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~ 77 (220)
....+++.++. .|...++..+..+..++... ..++|||+||| +|..++.++.. ...+|++||.|
T Consensus 4 ~l~~~l~~~~~f~~~~~~l~qy~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~G-tG~l~i~a~~~---g~~~v~~vdi~- 78 (201)
T d1wy7a1 4 ELAIALSKLKGFKNPKVWLEQYRTPGNAASELLWLAYSLGDIEGKVVADLGAG-TGVLSYGALLL---GAKEVICVEVD- 78 (201)
T ss_dssp HHHHHHHTSCCCSSCCGGGTCCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCT-TCHHHHHHHHT---TCSEEEEEESC-
T ss_pred HHHHHHccCCCCCCCCcccccCCCCHHHHHHHHHHHHhcCCCCCCEEEECcCc-chHHHHHHHHc---CCCEEEEEcCc-
Confidence 34556666544 34466777787776666654 46899999997 99988876542 13599999999
Q ss_pred hhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 78 IGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 78 ~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
+.+++.|++|++....+++++.+|+.+. ..+||+||.|++-
T Consensus 79 ~~~~~~a~~N~~~~~~~~~~~~~d~~~~----~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 79 KEAVDVLIENLGEFKGKFKVFIGDVSEF----NSRVDIVIMNPPF 119 (201)
T ss_dssp HHHHHHHHHHTGGGTTSEEEEESCGGGC----CCCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCceEEECchhhh----CCcCcEEEEcCcc
Confidence 9999999999985546789999998763 4689999999985
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.06 E-value=6.5e-10 Score=94.99 Aligned_cols=112 Identities=7% Similarity=-0.014 Sum_probs=88.5
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~ 107 (220)
+++...+...+..+||||||| .|..++++|+. .+.+|++|.++ ++.++.|++.++ ++.+++++..+|..+.
T Consensus 52 ~~~~~~l~l~~G~~VLDiGCG-~G~~a~~~a~~---~g~~v~git~s-~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~-- 124 (285)
T d1kpga_ 52 DLALGKLGLQPGMTLLDVGCG-WGATMMRAVEK---YDVNVVGLTLS-KNQANHVQQLVANSENLRSKRVLLAGWEQF-- 124 (285)
T ss_dssp HHHHTTTTCCTTCEEEEETCT-TSHHHHHHHHH---HCCEEEEEESC-HHHHHHHHHHHHTCCCCSCEEEEESCGGGC--
T ss_pred HHHHHHcCCCCCCEEEEecCc-chHHHHHHHhc---CCcceEEEecc-HHHHHHHHHHHHhhhhhhhhHHHHhhhhcc--
Confidence 445555566778999999997 89999999986 37899999999 999999999875 7889999999998653
Q ss_pred hcCCCccEEEE-cCCC--CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 108 GDYRGADFVLI-DCNI--DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 108 ~~~~~~D~Vfi-D~~k--~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.++||.|+. ..-. ...+|..+++.+.+. |+| ||.++...+.
T Consensus 125 --~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~--Lkp-gG~~~l~~i~ 168 (285)
T d1kpga_ 125 --DEPVDRIVSIGAFEHFGHERYDAFFSLAHRL--LPA-DGVMLLHTIT 168 (285)
T ss_dssp --CCCCSEEEEESCGGGTCTTTHHHHHHHHHHH--SCT-TCEEEEEEEE
T ss_pred --cccccceeeehhhhhcCchhHHHHHHHHHhh--cCC-CCcEEEEEEe
Confidence 368998763 2211 115788999999999 976 8888776654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.05 E-value=9.3e-10 Score=94.26 Aligned_cols=113 Identities=9% Similarity=-0.071 Sum_probs=88.8
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~ 107 (220)
+++...+...+..+||||||| .|..++++|+.- +.+|++|+.+ ++.++.|++.++ ++.+++++...|...
T Consensus 51 ~~~~~~l~l~~G~~VLDiGCG-~G~~~~~~a~~~---g~~v~git~s-~~q~~~a~~~~~~~~l~~~v~~~~~d~~~--- 122 (291)
T d1kpia_ 51 KLALDKLNLEPGMTLLDIGCG-WGSTMRHAVAEY---DVNVIGLTLS-ENQYAHDKAMFDEVDSPRRKEVRIQGWEE--- 122 (291)
T ss_dssp HHHHHTTCCCTTCEEEEETCT-TSHHHHHHHHHH---CCEEEEEESC-HHHHHHHHHHHHHSCCSSCEEEEECCGGG---
T ss_pred HHHHHhcCCCCCCEEEEecCc-chHHHHHHHHhc---Ccceeeccch-HHHHHHHHHHHHhhccchhhhhhhhcccc---
Confidence 344444566778999999997 899999998763 6799999999 999999999886 788889999999753
Q ss_pred hcCCCccEEEEcCCC----C------CccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 108 GDYRGADFVLIDCNI----D------IDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k----~------~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
..++||.|+.-.-- + ..+|..+|+.+.+. |+| ||.++...+..
T Consensus 123 -~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~--Lkp-gG~~~l~~i~~ 175 (291)
T d1kpia_ 123 -FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNL--TPD-DGRMLLHTITI 175 (291)
T ss_dssp -CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHT--SCT-TCEEEEEEEEC
T ss_pred -cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHh--CCC-CCceEEEEEec
Confidence 24789999832221 0 14689999999999 986 99988876653
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.05 E-value=7.4e-10 Score=91.79 Aligned_cols=106 Identities=17% Similarity=0.060 Sum_probs=80.0
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcC--CCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDY--RGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~--~~~D~ 115 (220)
..+..+|||+||| +|+++..||...+ +|+|++||.+ +.+++.+++..+.. .++..+.+|+....+... ..+|+
T Consensus 72 ikpG~~VLDlGcG-sG~~~~~la~~~~--~g~V~aVDiS-~~~i~~a~~~a~~~-~ni~~i~~d~~~~~~~~~~~~~v~~ 146 (230)
T d1g8sa_ 72 IKRDSKILYLGAS-AGTTPSHVADIAD--KGIVYAIEYA-PRIMRELLDACAER-ENIIPILGDANKPQEYANIVEKVDV 146 (230)
T ss_dssp CCTTCEEEEESCC-SSHHHHHHHHHTT--TSEEEEEESC-HHHHHHHHHHTTTC-TTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred CCCCCEEEEeCEE-cCHHHHHHHHhCC--CCEEEEEeCc-HHHHHHHHHHHhhh-cccceEEEeeccCcccccccceeEE
Confidence 4567899999997 9999999999754 6899999999 99999999887643 578889999877554322 34666
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEE-EEEecC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGV-IVGYNA 152 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggv-iv~dNv 152 (220)
+|.|-.. ..+....+..+.+. |+| ||. ++++..
T Consensus 147 i~~~~~~-~~~~~~~l~~~~r~--LKp-gG~~~i~~k~ 180 (230)
T d1g8sa_ 147 IYEDVAQ-PNQAEILIKNAKWF--LKK-GGYGMIAIKA 180 (230)
T ss_dssp EEECCCS-TTHHHHHHHHHHHH--EEE-EEEEEEEEEG
T ss_pred eeccccc-hHHHHHHHHHHHHh--ccc-CceEEEEeec
Confidence 7776654 24556778889888 887 665 444433
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=1.2e-09 Score=93.00 Aligned_cols=116 Identities=12% Similarity=0.139 Sum_probs=87.9
Q ss_pred ChhHHHHHHHHHhh--CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 25 EPDVGEFISALAAG--NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 25 ~p~~~~~L~~La~~--~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
.|++-.++...... .++.+|||+||| +|..++.||...+ ..+|+++|.+ +.+++.|++|++ ++ ++|+|+++
T Consensus 91 RpeTE~lv~~~l~~~~~~~~~vlDlGtG-SG~I~i~la~~~p--~~~v~avDis-~~Al~~A~~Na~~~~~-~~v~~~~~ 165 (274)
T d2b3ta1 91 RPDTECLVEQALARLPEQPCRILDLGTG-TGAIALALASERP--DCEIIAVDRM-PDAVSLAQRNAQHLAI-KNIHILQS 165 (274)
T ss_dssp CTTHHHHHHHHHHHSCSSCCEEEEETCT-TSHHHHHHHHHCT--TSEEEEECSS-HHHHHHHHHHHHHHTC-CSEEEECC
T ss_pred ccchhhhhhhHhhhhcccccceeeeehh-hhHHHHHHHhhCC--cceeeeccch-hHHHhHHHHHHHHhCc-ccceeeec
Confidence 36665555444333 346689999997 9999999998765 5899999999 999999999998 66 57999999
Q ss_pred chhhhhhhcCCCccEEEEcCCC-CC-------------------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 101 DAQKLLMGDYRGADFVLIDCNI-DI-------------------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k-~~-------------------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|..+.++. .+||+|+.+++- .. ..|.++++.+... |+| ||.+++.
T Consensus 166 d~~~~~~~--~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~--L~~-~G~l~lE 236 (274)
T d2b3ta1 166 DWFSALAG--QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNA--LVS-GGFLLLE 236 (274)
T ss_dssp STTGGGTT--CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGG--EEE-EEEEEEE
T ss_pred ccccccCC--CceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHh--cCC-CCEEEEE
Confidence 99887653 689999987653 00 1245567777777 775 7777774
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=8.5e-10 Score=92.74 Aligned_cols=94 Identities=12% Similarity=-0.007 Sum_probs=74.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.++.+||||||| +|+.+..|+...+ +.++++||++ +.+++.|++.. .+++++++|+.+ +|...+.||+|+.
T Consensus 83 ~~~~~iLDiGcG-~G~~~~~l~~~~~--~~~~~giD~s-~~~~~~a~~~~----~~~~~~~~d~~~-l~~~~~sfD~v~~ 153 (268)
T d1p91a_ 83 DKATAVLDIGCG-EGYYTHAFADALP--EITTFGLDVS-KVAIKAAAKRY----PQVTFCVASSHR-LPFSDTSMDAIIR 153 (268)
T ss_dssp TTCCEEEEETCT-TSTTHHHHHHTCT--TSEEEEEESC-HHHHHHHHHHC----TTSEEEECCTTS-CSBCTTCEEEEEE
T ss_pred CCCCEEEEeCCC-CcHHHHHHHHHCC--CCEEEEecch-Hhhhhhhhccc----ccccceeeehhh-ccCCCCCEEEEee
Confidence 467899999997 9999999998764 5899999999 99999998764 578999999987 4443578999996
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
-... .. ++.+.+. |+| ||++++-
T Consensus 154 ~~~~--~~----~~e~~rv--Lkp-gG~l~~~ 176 (268)
T d1p91a_ 154 IYAP--CK----AEELARV--VKP-GGWVITA 176 (268)
T ss_dssp ESCC--CC----HHHHHHH--EEE-EEEEEEE
T ss_pred cCCH--HH----HHHHHHH--hCC-CcEEEEE
Confidence 5444 33 3556677 776 7777664
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=1.7e-09 Score=93.95 Aligned_cols=117 Identities=16% Similarity=0.110 Sum_probs=89.7
Q ss_pred CCChhHHHHHHHHH----hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEE
Q 042616 23 GKEPDVGEFISALA----AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIE 96 (220)
Q Consensus 23 ~~~p~~~~~L~~La----~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve 96 (220)
...+..++.|...+ ...+.++|||++|| +|.+|+.||.. ..+|++||.+ ++.++.|++|.+ ++ ++++
T Consensus 191 Q~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG-~G~fsl~La~~----~~~V~gvE~~-~~ai~~A~~na~~n~i-~n~~ 263 (358)
T d1uwva2 191 QVNAGVNQKMVARALEWLDVQPEDRVLDLFCG-MGNFTLPLATQ----AASVVGVEGV-PALVEKGQQNARLNGL-QNVT 263 (358)
T ss_dssp CSBHHHHHHHHHHHHHHHTCCTTCEEEEESCT-TTTTHHHHHTT----SSEEEEEESC-HHHHHHHHHHHHHTTC-CSEE
T ss_pred ccchhhhhHHHHHHHHhhccCCCceEEEeccc-ccccchhcccc----ccEEEeccCc-HHHHHHHHHhHHhccc-ccce
Confidence 35566666555443 34467899999997 99999999863 6899999999 999999999987 65 7899
Q ss_pred EEEcchhhhhhhc---CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 97 FVKGDAQKLLMGD---YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 97 ~v~gda~~~L~~~---~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
|+.+++.+.++.. ...+|+|++|.++ .--.+.++.+.+. .|+.=+.|.=|
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~d~vilDPPR--~G~~~~~~~l~~~---~~~~ivYVSCn 316 (358)
T d1uwva2 264 FYHENLEEDVTKQPWAKNGFDKVLLDPAR--AGAAGVMQQIIKL---EPIRIVYVSCN 316 (358)
T ss_dssp EEECCTTSCCSSSGGGTTCCSEEEECCCT--TCCHHHHHHHHHH---CCSEEEEEESC
T ss_pred eeecchhhhhhhhhhhhccCceEEeCCCC--ccHHHHHHHHHHc---CCCEEEEEeCC
Confidence 9999998877543 3679999999998 3345688888876 35444445433
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.97 E-value=2.6e-09 Score=90.76 Aligned_cols=107 Identities=13% Similarity=0.164 Sum_probs=83.7
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---c--------cCCcEEEEEcchh
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---R--------YANCIEFVKGDAQ 103 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---g--------~~~~Ve~v~gda~ 103 (220)
+....+|++||.||.| .|.++..++. .+ ..+|+.||+| |+.++.|++++. + ...+++++.+|+.
T Consensus 67 l~~~~~p~~vLiiG~G-~G~~~~~~l~--~~-~~~v~~VEiD-~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~ 141 (276)
T d1mjfa_ 67 MLAHPKPKRVLVIGGG-DGGTVREVLQ--HD-VDEVIMVEID-EDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGF 141 (276)
T ss_dssp HHHSSCCCEEEEEECT-TSHHHHHHTT--SC-CSEEEEEESC-HHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHH
T ss_pred hhcCCCCceEEEecCC-chHHHHHHHH--hC-CceEEEecCC-HHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHH
Confidence 4556789999999975 7876654443 23 5799999999 999999999884 1 2467999999999
Q ss_pred hhhhhcCCCccEEEEcCCCCC----ccH-HHHHHHHHhhcCCCCCCEEEEEe
Q 042616 104 KLLMGDYRGADFVLIDCNIDI----DGH-KNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k~~----~~y-~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++.. .+.||+|++|...+. ..| .+.++.+.+. |+| ||++|+.
T Consensus 142 ~~l~~-~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~--L~~-~Gv~v~q 189 (276)
T d1mjfa_ 142 EFIKN-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDA--LNN-PGIYVTQ 189 (276)
T ss_dssp HHHHH-CCCEEEEEEECCCCC-----TTSHHHHHHHHHH--EEE-EEEEEEE
T ss_pred HHHhc-cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhh--cCC-CceEEEe
Confidence 99976 678999999987621 122 5789999999 876 8988875
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.95 E-value=2.6e-09 Score=92.06 Aligned_cols=103 Identities=10% Similarity=0.090 Sum_probs=77.5
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
...+.++||||||| +|..++.+|++. ..+|+++|.+ + .++.|+++.+ ++.++|++++++..++- ...+.||
T Consensus 35 ~~~~~~~VLDlGcG-tG~ls~~aa~~G---a~~V~avd~s-~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~-~~~~~~D 107 (328)
T d1g6q1_ 35 DLFKDKIVLDVGCG-TGILSMFAAKHG---AKHVIGVDMS-S-IIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVD 107 (328)
T ss_dssp HHHTTCEEEEETCT-TSHHHHHHHHTC---CSEEEEEESS-T-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEE
T ss_pred ccCCcCEEEEeCCC-CCHHHHHHHHhC---CCEEEEEeCC-H-HHHHHHHHHHHhCccccceEEEeehhhcc-Cccccee
Confidence 34578999999997 999999888752 2589999998 5 6788888876 77789999999998852 2246899
Q ss_pred EEEEcCCC---CC-ccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 115 FVLIDCNI---DI-DGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 115 ~VfiD~~k---~~-~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|+...-. .. .....++....+. |+| ||+++-
T Consensus 108 ~i~se~~~~~~~~e~~~~~~~~a~~r~--Lkp-gG~iiP 143 (328)
T d1g6q1_ 108 IIISEWMGYFLLYESMMDTVLYARDHY--LVE-GGLIFP 143 (328)
T ss_dssp EEEECCCBTTBSTTCCHHHHHHHHHHH--EEE-EEEEES
T ss_pred EEEEEecceeeccchhHHHHHHHHHhc--cCC-CeEEEe
Confidence 99875322 11 3446677777777 876 888863
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1.8e-09 Score=92.23 Aligned_cols=103 Identities=10% Similarity=0.042 Sum_probs=73.3
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
..+.++||||||| +|..++.+|++. ..+|+++|.+ +.+...++...+ +..++|+++++++.++- ...++||+|
T Consensus 33 ~~~~~~VLDiGcG-~G~lsl~aa~~G---a~~V~aid~s-~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~-~~~~~~D~I 106 (311)
T d2fyta1 33 IFKDKVVLDVGCG-TGILSMFAAKAG---AKKVLGVDQS-EILYQAMDIIRLNKLEDTITLIKGKIEEVH-LPVEKVDVI 106 (311)
T ss_dssp GTTTCEEEEETCT-TSHHHHHHHHTT---CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSCSCEEEE
T ss_pred cCCcCEEEEECCC-CCHHHHHHHHcC---CCEEEEEeCH-HHHHHHHHHHHHhCCCccceEEEeeHHHhc-CccccceEE
Confidence 4567899999997 999999988862 2599999999 776544443333 77789999999998853 224789999
Q ss_pred EEcCCC---CCccH-HHHHHHHHhhcCCCCCCEEEEE
Q 042616 117 LIDCNI---DIDGH-KNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fiD~~k---~~~~y-~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+.+.-- ..+.. ..++....+. |+| ||.++-
T Consensus 107 vse~~~~~~~~e~~~~~~~~a~~~~--Lkp-~G~iip 140 (311)
T d2fyta1 107 ISEWMGYFLLFESMLDSVLYAKNKY--LAK-GGSVYP 140 (311)
T ss_dssp EECCCBTTBTTTCHHHHHHHHHHHH--EEE-EEEEES
T ss_pred EEeeeeeecccccccHHHHHHHHhc--CCC-CcEEec
Confidence 975332 11233 4556656666 776 888773
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.94 E-value=6.5e-09 Score=84.49 Aligned_cols=101 Identities=11% Similarity=-0.069 Sum_probs=78.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CCCccEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YRGADFV 116 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~~~D~V 116 (220)
....||||||| .|-+++.||+..+ +..+++||.+ +..+..|.+.+. ++ .||.++.+|+.+++..+ ..++|.|
T Consensus 31 ~~plvLdIGcG-~G~~~~~lA~~~p--~~~~iGid~~-~~~v~~a~~~~~~~~l-~Ni~~~~~da~~l~~~~~~~~~~~i 105 (204)
T d1yzha1 31 DNPIHVEVGSG-KGAFVSGMAKQNP--DINYIGIDIQ-KSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRL 105 (204)
T ss_dssp CCCEEEEESCT-TSHHHHHHHHHCT--TSEEEEEESC-HHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred CCCeEEEEecc-CCHHHHHHHHHCC--CCceEEEecc-HHHHHHHHHhhhhhcc-ccceeeecCHHHHhhhccCCceehh
Confidence 44679999997 9999999999865 5889999999 999998888776 66 68999999998876443 3678988
Q ss_pred EEcCCC---CC------ccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 117 LIDCNI---DI------DGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 117 fiD~~k---~~------~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
++-.+- .. --...+++.+.+. |+| ||.+.
T Consensus 106 ~i~fPdPw~K~~h~krRl~~~~~l~~~~~~--Lkp-gG~l~ 143 (204)
T d1yzha1 106 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRI--LPE-NGEIH 143 (204)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHH--SCT-TCEEE
T ss_pred cccccccccchhhhhhhhhHHHHHHHHHHh--CCC-CcEEE
Confidence 775432 00 1126889999999 987 66553
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.94 E-value=2.3e-09 Score=86.98 Aligned_cols=90 Identities=8% Similarity=0.079 Sum_probs=69.6
Q ss_pred CCCCCChhHHHHHHHHHhhC---CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEE
Q 042616 20 GKRGKEPDVGEFISALAAGN---NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIE 96 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~---~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve 96 (220)
.|...+++.|+.+...+... ..++|||+||| +|..++.++..- ..+|++||.| +..++.|++|+ .+++
T Consensus 25 eQy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcG-tG~l~i~a~~~g---a~~V~~vDid-~~a~~~ar~N~----~~~~ 95 (197)
T d1ne2a_ 25 EQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTG-NGILACGSYLLG---AESVTAFDID-PDAIETAKRNC----GGVN 95 (197)
T ss_dssp --CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCT-TCHHHHHHHHTT---BSEEEEEESC-HHHHHHHHHHC----TTSE
T ss_pred ccCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCC-CcHHHHHHHHcC---CCcccccccC-HHHHHHHHHcc----cccc
Confidence 45678888876665444443 57999999997 998887766531 3689999999 99999999997 4689
Q ss_pred EEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 97 FVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 97 ~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
++++|..++ .++||.||.|.+-
T Consensus 96 ~~~~D~~~l----~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 96 FMVADVSEI----SGKYDTWIMNPPF 117 (197)
T ss_dssp EEECCGGGC----CCCEEEEEECCCC
T ss_pred EEEEehhhc----CCcceEEEeCccc
Confidence 999998662 4689999999874
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.94 E-value=1.8e-09 Score=92.78 Aligned_cols=101 Identities=13% Similarity=0.092 Sum_probs=76.6
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
..+.+.||||||| +|..++.+|++. ..+|++||.+ +. +..|+++++ ++.++|+++++++.++- .-.++||+
T Consensus 31 ~~~~~~VLDiGcG-~G~ls~~aa~~G---a~~V~avd~s-~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~-~~~~~~D~ 103 (316)
T d1oria_ 31 LFKDKVVLDVGSG-TGILCMFAAKAG---ARKVIGIECS-SI-SDYAVKIVKANKLDHVVTIIKGKVEEVE-LPVEKVDI 103 (316)
T ss_dssp HHTTCEEEEETCT-TSHHHHHHHHTT---CSEEEEEECS-TT-HHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSSCEEE
T ss_pred cCCcCEEEEEecC-CcHHHHHHHHhC---CCEEEEEcCc-HH-HhhhhhHHHHhCCccccceEeccHHHcc-cccceeEE
Confidence 4477999999997 999999888752 2589999999 75 466666665 77889999999998852 22478999
Q ss_pred EEEcCCC----CCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 116 VLIDCNI----DIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 116 VfiD~~k----~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
|+.+.-. ....+..+++.+.+. |+| ||.++
T Consensus 104 ivs~~~~~~l~~e~~~~~~l~~~~r~--Lkp-~G~ii 137 (316)
T d1oria_ 104 IISEWMGYCLFYESMLNTVLHARDKW--LAP-DGLIF 137 (316)
T ss_dssp EEECCCBBTBTBTCCHHHHHHHHHHH--EEE-EEEEE
T ss_pred EeeeeeeeeeccHHHHHHHHHHHHhc--CCC-CeEEE
Confidence 9876432 113467788888888 876 88876
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.92 E-value=2.2e-09 Score=89.11 Aligned_cols=104 Identities=14% Similarity=0.170 Sum_probs=79.5
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
-.+.++||||||| +|..++.|++..+ +.+++.+|. ++.++.|++++. ++.++|+++.+|..+..| .+||+
T Consensus 78 ~~~~~~VLDvGcG-~G~~~~~la~~~p--~~~~~~~D~--~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~---~~~D~ 149 (253)
T d1tw3a2 78 WTNVRHVLDVGGG-KGGFAAAIARRAP--HVSATVLEM--AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP---RKADA 149 (253)
T ss_dssp CTTCSEEEEETCT-TSHHHHHHHHHCT--TCEEEEEEC--TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS---SCEEE
T ss_pred CccCCEEEEeCCC-CCHHHHHHHHhcc--eeEEEEccC--HHHHHHHHHHHHHhhcccchhhccccchhhcc---cchhh
Confidence 3567899999996 9999999998865 578999996 468899999886 777899999999876443 57999
Q ss_pred EEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEE-EEEecC
Q 042616 116 VLIDCNIDI---DGHKNVFRAAKESVMHGSGAGV-IVGYNA 152 (220)
Q Consensus 116 VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggv-iv~dNv 152 (220)
|++-.--+. ++...+|+.+.+. |+| ||. +|.+..
T Consensus 150 v~~~~vlh~~~d~~~~~~L~~~~~~--LkP-GG~l~i~e~~ 187 (253)
T d1tw3a2 150 IILSFVLLNWPDHDAVRILTRCAEA--LEP-GGRILIHERD 187 (253)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHT--EEE-EEEEEEEECC
T ss_pred eeeccccccCCchhhHHHHHHHHHh--cCC-CcEEEEEecc
Confidence 997654411 2224678999998 887 665 444433
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.92 E-value=3.1e-09 Score=91.22 Aligned_cols=109 Identities=12% Similarity=0.096 Sum_probs=84.0
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc-CCcEEEEEcchhhhhhhcC
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY-ANCIEFVKGDAQKLLMGDY 110 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~-~~~Ve~v~gda~~~L~~~~ 110 (220)
....+|++||.||.| .|..+-.+++- ....+|++||+| |+.++.|++++. ++ ..+++++.+|+.+++.+..
T Consensus 85 ~~~~~pk~VLiiGgG-~G~~~r~~l~~--~~~~~i~~VEID-p~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~ 160 (295)
T d1inla_ 85 FLHPNPKKVLIIGGG-DGGTLREVLKH--DSVEKAILCEVD-GLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFK 160 (295)
T ss_dssp HHSSSCCEEEEEECT-TCHHHHHHTTS--TTCSEEEEEESC-HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCS
T ss_pred hhCCCCceEEEecCC-chHHHHHHHhc--CCCceEEEecCC-HHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCC
Confidence 345678999999965 78665555542 225799999999 999999999885 23 4689999999999998767
Q ss_pred CCccEEEEcCCCCC-----ccH-HHHHHHHHhhcCCCCCCEEEEEec
Q 042616 111 RGADFVLIDCNIDI-----DGH-KNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 111 ~~~D~VfiD~~k~~-----~~y-~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+.||+|++|+.... ..| .+.++.+.+. |+| ||++++.-
T Consensus 161 ~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~--L~~-~Gi~v~q~ 204 (295)
T d1inla_ 161 NEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDA--LKE-DGVFSAET 204 (295)
T ss_dssp SCEEEEEEEC----------CCSHHHHHHHHHH--EEE-EEEEEEEC
T ss_pred CCCCEEEEcCCCCCcCchhhhccHHHHHHHHhh--cCC-CcEEEEec
Confidence 88999999975411 233 7889999999 876 99998863
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.91 E-value=3.4e-09 Score=89.96 Aligned_cols=110 Identities=12% Similarity=0.107 Sum_probs=86.1
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---c-c-CCcEEEEEcchhhhhhhc
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---R-Y-ANCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---g-~-~~~Ve~v~gda~~~L~~~ 109 (220)
|....+|++||-||.| .|..+-++.+- +...+|++||+| |+.++.|++++. + + ..+++++.+|+.++|...
T Consensus 70 l~~~~~p~~vLiiGgG-~G~~~~~~l~~--~~~~~i~~VEID-~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~ 145 (274)
T d1iy9a_ 70 LFTHPNPEHVLVVGGG-DGGVIREILKH--PSVKKATLVDID-GKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS 145 (274)
T ss_dssp HHHSSSCCEEEEESCT-TCHHHHHHTTC--TTCSEEEEEESC-HHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC
T ss_pred hhccCCcceEEecCCC-CcHHHHHHHhc--CCcceEEEecCC-HHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc
Confidence 3445678999999964 78776665542 225799999999 999999999984 2 2 367999999999999776
Q ss_pred CCCccEEEEcCCCCC----ccH-HHHHHHHHhhcCCCCCCEEEEEec
Q 042616 110 YRGADFVLIDCNIDI----DGH-KNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 110 ~~~~D~VfiD~~k~~----~~y-~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
.+.||+|++|...+. ..| .+.++.+++. |+| ||+++...
T Consensus 146 ~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~--L~~-~Gv~v~q~ 189 (274)
T d1iy9a_ 146 ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKA--LKE-DGIFVAQT 189 (274)
T ss_dssp CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHH--EEE-EEEEEEEC
T ss_pred CCCCCEEEEcCCCCCCcchhhccHHHHHHHHhh--cCC-CceEEEec
Confidence 678999999986511 123 7889999999 876 99999863
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.86 E-value=6.4e-09 Score=89.88 Aligned_cols=115 Identities=12% Similarity=0.169 Sum_probs=84.9
Q ss_pred HHHHHH--HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc-CCcEEEEEcc
Q 042616 29 GEFISA--LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY-ANCIEFVKGD 101 (220)
Q Consensus 29 ~~~L~~--La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~-~~~Ve~v~gd 101 (220)
-++|.. +....+|++||.||.| .|..+-.+.+- ++..+|++||+| ++.++.|++++. ++ ..+++++.+|
T Consensus 93 hE~l~h~pl~~~~~pk~VLIiGgG-~G~~~rellk~--~~v~~v~~VEID-~~Vv~~a~~~~~~~~~~~~dprv~i~i~D 168 (312)
T d2b2ca1 93 QEMLAHLPMFAHPDPKRVLIIGGG-DGGILREVLKH--ESVEKVTMCEID-EMVIDVAKKFLPGMSCGFSHPKLDLFCGD 168 (312)
T ss_dssp HHHHHHHHHHHSSSCCEEEEESCT-TSHHHHHHTTC--TTCCEEEEECSC-HHHHHHHHHHCTTTSGGGGCTTEEEECSC
T ss_pred HHHhhhHHHhcCCCCCeEEEeCCC-chHHHHHHHHc--CCcceEEEEccc-HHHHHHHHhhchhhccccCCCCeEEEEch
Confidence 344443 4456779999999965 77766655532 224799999999 999999999985 23 3679999999
Q ss_pred hhhhhhhcCCCccEEEEcCCCCC----ccH-HHHHHHHHhhcCCCCCCEEEEEe
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDI----DGH-KNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~----~~y-~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.+++....+.||+|++|...+. ..| .+.++.+.+. |+| ||++|..
T Consensus 169 a~~~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~--L~~-~Gi~v~q 219 (312)
T d2b2ca1 169 GFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDA--LKE-DGILSSQ 219 (312)
T ss_dssp HHHHHHHCTTCEEEEEECCC-------------HHHHHHHH--EEE-EEEEEEE
T ss_pred HHHHHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhh--cCC-CcEEEEe
Confidence 99999776678999999986511 233 6778999998 876 9999986
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.85 E-value=1.2e-08 Score=82.23 Aligned_cols=114 Identities=17% Similarity=0.233 Sum_probs=87.3
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh---
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--- 105 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--- 105 (220)
-+++..| ...+...+||++|| +|.-|..+++..+ +++|+++|.| +++++.|++.++.+.+++.+++++..+.
T Consensus 13 ~evi~~l-~~~~~~~~lD~t~G-~Gghs~~il~~~~--~~~vi~~D~d-~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~ 87 (192)
T d1m6ya2 13 REVIEFL-KPEDEKIILDCTVG-EGGHSRAILEHCP--GCRIIGIDVD-SEVLRIAEEKLKEFSDRVSLFKVSYREADFL 87 (192)
T ss_dssp HHHHHHH-CCCTTCEEEETTCT-TSHHHHHHHHHCT--TCEEEEEESC-HHHHHHHHHHTGGGTTTEEEEECCGGGHHHH
T ss_pred HHHHHhh-CCCCCCEEEEecCC-CcHHHHHHHhcCC--CCeEEEeech-HHHHHHHHHhhccccccccchhHHHhhHHHH
Confidence 3455555 56778899999886 8888888888874 6899999999 9999999999987768899999987653
Q ss_pred hhhc-CCCccEEEEcCCCCC----------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 106 LMGD-YRGADFVLIDCNIDI----------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 106 L~~~-~~~~D~VfiD~~k~~----------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++.. .++||.|++|..... ....+.++.+... |+| ||.+++-
T Consensus 88 ~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~--Lk~-gG~l~ii 140 (192)
T d1m6ya2 88 LKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDL--LNP-GGRIVVI 140 (192)
T ss_dssp HHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGG--EEE-EEEEEEE
T ss_pred HHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHh--cCC-CCeeeee
Confidence 3333 478999999976511 2234667777777 776 8887764
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.85 E-value=3.4e-09 Score=84.53 Aligned_cols=102 Identities=15% Similarity=0.057 Sum_probs=76.0
Q ss_pred HHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCC
Q 042616 32 ISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYR 111 (220)
Q Consensus 32 L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~ 111 (220)
+..+....+..+||||||| +|..+..|+ ++++||++ +.+++.|++. +++++++|+.++ +...+
T Consensus 28 ~~~~~~~~~~~~vLDiGcG-~G~~~~~~~--------~~~giD~s-~~~~~~a~~~------~~~~~~~d~~~l-~~~~~ 90 (208)
T d1vlma_ 28 LQAVKCLLPEGRGVEIGVG-TGRFAVPLK--------IKIGVEPS-ERMAEIARKR------GVFVLKGTAENL-PLKDE 90 (208)
T ss_dssp HHHHHHHCCSSCEEEETCT-TSTTHHHHT--------CCEEEESC-HHHHHHHHHT------TCEEEECBTTBC-CSCTT
T ss_pred HHHHHhhCCCCeEEEECCC-Ccccccccc--------eEEEEeCC-hhhccccccc------cccccccccccc-ccccc
Confidence 3444445556689999997 998776552 46899999 9999999874 689999999874 33357
Q ss_pred CccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 112 GADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 112 ~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+||+|+.-.-- .-.+...+++.+.+. |+| ||.+++....
T Consensus 91 ~fD~I~~~~~l~h~~d~~~~l~~~~~~--L~p-gG~l~i~~~~ 130 (208)
T d1vlma_ 91 SFDFALMVTTICFVDDPERALKEAYRI--LKK-GGYLIVGIVD 130 (208)
T ss_dssp CEEEEEEESCGGGSSCHHHHHHHHHHH--EEE-EEEEEEEEEC
T ss_pred cccccccccccccccccccchhhhhhc--CCC-CceEEEEecC
Confidence 89999865433 114567889999999 886 8877776543
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=6.7e-09 Score=88.65 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=85.5
Q ss_pred HHHHHH--HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc-CCcEEEEEcc
Q 042616 29 GEFISA--LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY-ANCIEFVKGD 101 (220)
Q Consensus 29 ~~~L~~--La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~-~~~Ve~v~gd 101 (220)
-+.|.. ++...+|++||-||.| .|..+-.+.+- ++..+|+.||+| |+.++.|++++. .. ..+++++.+|
T Consensus 65 he~l~h~~l~~~~~pk~vLiiGgG-~G~~~~~~l~~--~~~~~v~~vEiD-~~Vv~~a~~~~~~~~~~~~d~rv~i~~~D 140 (285)
T d2o07a1 65 QEMIANLPLCSHPNPRKVLIIGGG-DGGVLREVVKH--PSVESVVQCEID-EDVIQVSKKFLPGMAIGYSSSKLTLHVGD 140 (285)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEECT-TSHHHHHHTTC--TTCCEEEEEESC-HHHHHHHHHHCHHHHGGGGCTTEEEEESC
T ss_pred HHHhccHhhhhCcCcCeEEEeCCC-chHHHHHHHHc--CCcceeeeccCC-HHHHHHHHhhchhhccccCCCCceEEEcc
Confidence 344543 3345679999999964 78766655532 225799999999 999999999984 22 4689999999
Q ss_pred hhhhhhhcCCCccEEEEcCCCCC----ccH-HHHHHHHHhhcCCCCCCEEEEEe
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDI----DGH-KNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~----~~y-~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.++|....+.||+|++|...+. ..| .+.++.+.+. |+| ||++++.
T Consensus 141 a~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~--L~~-~Gi~v~q 191 (285)
T d2o07a1 141 GFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTA--LKE-DGVLCCQ 191 (285)
T ss_dssp HHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHH--EEE-EEEEEEE
T ss_pred HHHHHhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHh--cCC-CCeEEEe
Confidence 99999765678999999986411 222 4678999998 876 9998875
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=2.2e-08 Score=86.56 Aligned_cols=113 Identities=10% Similarity=-0.049 Sum_probs=83.3
Q ss_pred HHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---------cc-CCcEEEEEcchh
Q 042616 34 ALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---------RY-ANCIEFVKGDAQ 103 (220)
Q Consensus 34 ~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---------g~-~~~Ve~v~gda~ 103 (220)
..+...+...||||||| +|..++.+|...+ .+++++||.+ +.+++.|+++++ |. ..+|+|++||+.
T Consensus 145 ~~~~l~~~~~vlD~GcG-~G~~~~~~a~~~~--~~~~~Gid~s-~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~ 220 (328)
T d1nw3a_ 145 DEIKMTDDDLFVDLGSG-VGQVVLQVAAATN--CKHHYGVEKA-DIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL 220 (328)
T ss_dssp HHSCCCTTCEEEEETCT-TSHHHHHHHHHCC--CSEEEEEECS-HHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT
T ss_pred HHcCCCCCCEEEEcCCC-CCHHHHHHHHHhC--CCeEEEEeCC-HHHHHHHHHHHHHHHHHhhhccccCCceEEEECccc
Confidence 34456778999999997 9999998887543 5799999999 999999988764 22 256999999997
Q ss_pred hhhhhcC--CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 104 KLLMGDY--RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 104 ~~L~~~~--~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+. +... ...|+||+..-....+....+..+.+. |+| ||.||+-..+.
T Consensus 221 ~~-~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~--LKp-Gg~iv~~~~~~ 269 (328)
T d1nw3a_ 221 SE-EWRERIANTSVIFVNNFAFGPEVDHQLKERFAN--MKE-GGRIVSSKPFA 269 (328)
T ss_dssp SH-HHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTT--CCT-TCEEEESSCSS
T ss_pred cc-ccccccCcceEEEEcceecchHHHHHHHHHHHh--CCC-CcEEEEecccC
Confidence 63 2111 236899986554223456677788887 876 99998865554
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.80 E-value=3.1e-08 Score=83.87 Aligned_cols=94 Identities=7% Similarity=0.086 Sum_probs=74.5
Q ss_pred CCChhHHHHHHHHH---hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 23 GKEPDVGEFISALA---AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 23 ~~~p~~~~~L~~La---~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
+-.|++..++.... ...+..+++|+||| +|..++.++.. + ..+|+++|.+ +++++.|++|++ ++.+++.+
T Consensus 90 IPRpeTE~lv~~~~~~~~~~~~~~vld~g~G-sG~i~~~la~~--~-~~~v~a~Dis-~~Al~~A~~Na~~~~~~~~~~i 164 (271)
T d1nv8a_ 90 VPRPETEELVELALELIRKYGIKTVADIGTG-SGAIGVSVAKF--S-DAIVFATDVS-SKAVEIARKNAERHGVSDRFFV 164 (271)
T ss_dssp CCCTTHHHHHHHHHHHHHHHTCCEEEEESCT-TSHHHHHHHHH--S-SCEEEEEESC-HHHHHHHHHHHHHTTCTTSEEE
T ss_pred CchhhhhhhhhhhhhhhccccccEEEEeeee-eehhhhhhhhc--c-cceeeechhh-hhHHHHHHHHHHHcCCCceeEE
Confidence 34466655544333 34567889999986 89888887753 3 6899999999 999999999998 77788999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCC
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCN 121 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~ 121 (220)
..++..+.++...+.||+|+-+.+
T Consensus 165 ~~~~~~~~~~~~~~~fDlIVsNPP 188 (271)
T d1nv8a_ 165 RKGEFLEPFKEKFASIEMILSNPP 188 (271)
T ss_dssp EESSTTGGGGGGTTTCCEEEECCC
T ss_pred eecccccccccccCcccEEEEccc
Confidence 999999888765679999998765
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.80 E-value=1.3e-08 Score=86.95 Aligned_cols=107 Identities=16% Similarity=0.146 Sum_probs=83.5
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc-CCcEEEEEcchhhhhhhcC-C
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY-ANCIEFVKGDAQKLLMGDY-R 111 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~-~~~Ve~v~gda~~~L~~~~-~ 111 (220)
..+|++||-||.| .|..+-.+.+- ....+|+.||+| ++.++.|++++. .. ..+++++.+|+.+++.+.. +
T Consensus 78 ~~~pk~VLiiGgG-~G~~~r~~l~~--~~~~~i~~VEiD-~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~ 153 (290)
T d1xj5a_ 78 IPNPKKVLVIGGG-DGGVLREVARH--ASIEQIDMCEID-KMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEG 153 (290)
T ss_dssp SSCCCEEEEETCS-SSHHHHHHTTC--TTCCEEEEEESC-HHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTT
T ss_pred CCCCcceEEecCC-chHHHHHHHhc--ccceeeEEecCC-HHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhcccc
Confidence 4678999999964 77766555542 224799999999 999999999884 22 4779999999999997653 5
Q ss_pred CccEEEEcCCCCC----ccH-HHHHHHHHhhcCCCCCCEEEEEec
Q 042616 112 GADFVLIDCNIDI----DGH-KNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 112 ~~D~VfiD~~k~~----~~y-~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
.||+|++|+.... ..| .+.++.+++. |+| ||++|..-
T Consensus 154 ~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~--L~~-~Gi~v~q~ 195 (290)
T d1xj5a_ 154 SYDAVIVDSSDPIGPAKELFEKPFFQSVARA--LRP-GGVVCTQA 195 (290)
T ss_dssp CEEEEEECCCCTTSGGGGGGSHHHHHHHHHH--EEE-EEEEEEEC
T ss_pred CccEEEEcCCCCCCcchhhCCHHHHHHHHHh--cCC-CcEEEEec
Confidence 8999999987511 233 6789999999 876 99999863
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=6.2e-09 Score=86.96 Aligned_cols=120 Identities=8% Similarity=0.063 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcC----CCCcEEEEEeCCchhHHHHHHHHhccc--CCc--EEE
Q 042616 26 PDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAAR----QTGGRVVCILSGVIGDIDASKKSLGRY--ANC--IEF 97 (220)
Q Consensus 26 p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~----~~~grV~tIE~d~~~~~~~Ar~~l~g~--~~~--Ve~ 97 (220)
....++|..+....+.-+||||||| +|..+..|+.++. ....++++||++ +.+++.|++.++.. ..+ +++
T Consensus 26 ~~l~~~l~~l~~~~~~~~VLDiGcG-~G~~~~~ll~~l~~~~~~~~~~~~~vD~s-~~~l~~a~~~~~~~~~~~~~~~~~ 103 (280)
T d1jqea_ 26 KKLPGIIGRIGDTKSEIKILSIGGG-AGEIDLQILSKVQAQYPGVCINNEVVEPS-AEQIAKYKELVAKISNLENVKFAW 103 (280)
T ss_dssp HTHHHHTTTTTTTCSEEEEEEETCT-TSHHHHHHHHHHHHHSTTCEEEEEEECCC-HHHHHHHHHHHTTCCSCTTEEEEE
T ss_pred HHHHHHHHHhccCCCCCeEEEEcCC-CCHHHHHHHHHhhhhccCCceEEEEEeCc-HHHHHHHHHHHhhccccccccccc
Confidence 3344455555544445589999997 9999999887643 224578999999 99999999988622 133 456
Q ss_pred EEcchhhhhhh-----cCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 98 VKGDAQKLLMG-----DYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 98 v~gda~~~L~~-----~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
...+++++... ..++||+|+.=.-- .-.+....++.+.+. |+| ||.+++-
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~--Lkp-gG~l~i~ 159 (280)
T d1jqea_ 104 HKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSL--LGT-NAKMLII 159 (280)
T ss_dssp ECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHT--EEE-EEEEEEE
T ss_pred hhhhhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhh--CCC-CCEEEEE
Confidence 77777665321 14789999864332 225678899999998 887 7765553
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.77 E-value=1.5e-08 Score=84.47 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=80.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+.++||||||| +|..+..|+++.| +.+++.+|. |+.++.|+++++ ++.++++++.+|..+.+| .++|+|
T Consensus 80 ~~~~~vlDvG~G-~G~~~~~l~~~~P--~~~~~~~Dl--p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p---~~~D~v 151 (256)
T d1qzza2 80 SAVRHVLDVGGG-NGGMLAAIALRAP--HLRGTLVEL--AGPAERARRRFADAGLADRVTVAEGDFFKPLP---VTADVV 151 (256)
T ss_dssp TTCCEEEEETCT-TSHHHHHHHHHCT--TCEEEEEEC--HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS---CCEEEE
T ss_pred ccCCEEEEECCC-CCHHHHHHHHhhc--CcEEEEecC--hHHHHHHHHHHhhcCCcceeeeeeeecccccc---ccchhh
Confidence 456899999986 9999999999865 589999996 578999999986 777899999999876443 469999
Q ss_pred EEcCCCCC---ccHHHHHHHHHhhcCCCCCCE-EEEEecCC
Q 042616 117 LIDCNIDI---DGHKNVFRAAKESVMHGSGAG-VIVGYNAL 153 (220)
Q Consensus 117 fiD~~k~~---~~y~~~l~~l~~~~~L~~~Gg-viv~dNv~ 153 (220)
++-.--+. ++-..+|+.+.+. |+| || ++|.|.+.
T Consensus 152 ~~~~vLh~~~d~~~~~lL~~i~~~--Lkp-gG~llI~d~~~ 189 (256)
T d1qzza2 152 LLSFVLLNWSDEDALTILRGCVRA--LEP-GGRLLVLDRAD 189 (256)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHH--EEE-EEEEEEEECCH
T ss_pred hccccccccCcHHHHHHHHHHHhh--cCC-cceeEEEEecc
Confidence 87644311 2335678999998 887 66 56666554
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=8.8e-08 Score=79.83 Aligned_cols=78 Identities=18% Similarity=0.040 Sum_probs=64.8
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhh-c----CCCc
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMG-D----YRGA 113 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~-~----~~~~ 113 (220)
..+||||||| +|..++.||...+ +.+++++|.+ +++++.|++|++ ++.+++.+++.+..+.+.. + ...|
T Consensus 62 ~~~~LDiGtG-sg~I~~~l~~~~~--~~~~~~~Di~-~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~f 137 (250)
T d2h00a1 62 LRRGIDIGTG-ASCIYPLLGATLN--GWYFLATEVD-DMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIY 137 (250)
T ss_dssp CCEEEEESCT-TTTHHHHHHHHHH--CCEEEEEESC-HHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred cceEEEeCCC-chHHHHHHHHhCC--CccccceecC-HHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCce
Confidence 4689999997 8999999998775 6899999999 999999999998 7889999999876554321 1 3579
Q ss_pred cEEEEcCCC
Q 042616 114 DFVLIDCNI 122 (220)
Q Consensus 114 D~VfiD~~k 122 (220)
|+|+..++-
T Consensus 138 D~ivsNPPY 146 (250)
T d2h00a1 138 DFCMCNPPF 146 (250)
T ss_dssp SEEEECCCC
T ss_pred eEEEecCcc
Confidence 999977765
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=2.2e-07 Score=82.68 Aligned_cols=118 Identities=8% Similarity=-0.007 Sum_probs=82.4
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--c-------c-CCcEEE-
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--R-------Y-ANCIEF- 97 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g-------~-~~~Ve~- 97 (220)
.+++.. +...+.+.+|||||| +|..++.+|...+ .+++++||.+ +.+++.|+++.+ + . ...+.+
T Consensus 206 ~~Il~~-l~Lkpgd~fLDLGCG-~G~~vl~aA~~~g--~~~v~GIDiS-~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~ 280 (406)
T d1u2za_ 206 SDVYQQ-CQLKKGDTFMDLGSG-VGNCVVQAALECG--CALSFGCEIM-DDASDLTILQYEELKKRCKLYGMRLNNVEFS 280 (406)
T ss_dssp HHHHHH-TTCCTTCEEEEESCT-TSHHHHHHHHHHC--CSEEEEEECC-HHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred HHHHHH-hCCCCCCEEEeCCCC-CcHHHHHHHHHcC--CCeEEEEeCC-HHHHHHHHHHHHHHhhhhhhhccccccceee
Confidence 444433 356777999999997 9999999998754 4699999999 999999998775 1 1 123444
Q ss_pred EEcchhh--hhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 98 VKGDAQK--LLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 98 v~gda~~--~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
..++..+ ........+|+||+.......+....+..+.+. |+| ||.||+-+.+.
T Consensus 281 ~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~--LKP-GGrIVs~~~~~ 336 (406)
T d1u2za_ 281 LKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQT--AKV-GCKIISLKSLR 336 (406)
T ss_dssp ESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTT--CCT-TCEEEESSCSS
T ss_pred eeechhhccccccccccceEEEEecccCchHHHHHHHHHHHh--cCC-CcEEEEecccC
Confidence 3444322 222223568999998654235667788888888 876 99888766554
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.50 E-value=4.8e-07 Score=74.70 Aligned_cols=105 Identities=14% Similarity=0.014 Sum_probs=76.9
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA 102 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda 102 (220)
.+.+...+-+-..+...+.+.|||||+| +|..|..|+.. +.+|++||.| +..++..++.+... +++++++||+
T Consensus 4 L~d~~i~~~iv~~~~~~~~d~VlEIGpG-~G~LT~~Ll~~----~~~v~avE~D-~~l~~~l~~~~~~~-~n~~i~~~D~ 76 (235)
T d1qama_ 4 ITSKHNIDKIMTNIRLNEHDNIFEIGSG-KGHFTLELVQR----CNFVTAIEID-HKLCKTTENKLVDH-DNFQVLNKDI 76 (235)
T ss_dssp CCCHHHHHHHHTTCCCCTTCEEEEECCT-TSHHHHHHHHH----SSEEEEECSC-HHHHHHHHHHTTTC-CSEEEECCCG
T ss_pred cCCHHHHHHHHHhcCCCCCCeEEEECCC-chHHHHHHHhC----cCceEEEeec-cchHHHHHHHhhcc-cchhhhhhhh
Confidence 4556666666666677789999999997 99999999975 5799999999 99999999877644 6899999999
Q ss_pred hhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 103 QKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
.++- +....++.++ ++-++.-...++..+...
T Consensus 77 l~~~--~~~~~~~~vv-~NLPYnIss~il~~ll~~ 108 (235)
T d1qama_ 77 LQFK--FPKNQSYKIF-GNIPYNISTDIIRKIVFD 108 (235)
T ss_dssp GGCC--CCSSCCCEEE-EECCGGGHHHHHHHHHHS
T ss_pred hhcc--ccccccceee-eeehhhhhHHHHHHHHhh
Confidence 9852 1222233333 444335556666666543
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=1.7e-07 Score=79.71 Aligned_cols=98 Identities=16% Similarity=0.254 Sum_probs=78.6
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
+...+......+...++...+..+|||++++ .|.-|+.||..+.. .++|+++|.+ +.+++..+++++ |+ .++++
T Consensus 74 G~~~~QD~sS~l~~~~L~~~~g~~vLD~cAa-pGgKt~~la~l~~~-~~~i~a~d~~-~~R~~~l~~~l~r~g~-~~~~~ 149 (293)
T d2b9ea1 74 GHLILQDRASCLPAMLLDPPPGSHVIDACAA-PGNKTSHLAALLKN-QGKIFAFDLD-AKRLASMATLLARAGV-SCCEL 149 (293)
T ss_dssp TSEEECCTGGGHHHHHHCCCTTCEEEESSCT-TCHHHHHHHHHHTT-CSEEEEEESC-HHHHHHHHHHHHHTTC-CSEEE
T ss_pred cEEEEcCCcccccccccCCCccceEEecccc-hhhHHHHHHHHhcC-CceEeeecCC-HHHHHHHHHHHHhcCc-cceee
Confidence 4434444445666666677888999999985 89999999988775 8999999999 999999999998 66 67999
Q ss_pred EEcchhhhhhhc--CCCccEEEEcCC
Q 042616 98 VKGDAQKLLMGD--YRGADFVLIDCN 121 (220)
Q Consensus 98 v~gda~~~L~~~--~~~~D~VfiD~~ 121 (220)
...|+..+-+.. .+.||.|++|++
T Consensus 150 ~~~d~~~~~~~~~~~~~fD~VL~DaP 175 (293)
T d2b9ea1 150 AEEDFLAVSPSDPRYHEVHYILLDPS 175 (293)
T ss_dssp EECCGGGSCTTCGGGTTEEEEEECCC
T ss_pred eehhhhhhcccccccceeeEEeecCc
Confidence 999988754432 367999999987
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.46 E-value=7.6e-07 Score=78.32 Aligned_cols=108 Identities=16% Similarity=0.080 Sum_probs=87.2
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccC--------------CcEEEE
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYA--------------NCIEFV 98 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~--------------~~Ve~v 98 (220)
+++..++.+|||..++ +|..++..|..++ ..+|++.|.+ +..++.+++|++ +.. .++++.
T Consensus 40 ~~~~~~~~~vLD~~sa-sG~rsiRya~E~~--~~~V~~nDis-~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~ 115 (375)
T d2dula1 40 LLNILNPKIVLDALSA-TGIRGIRFALETP--AEEVWLNDIS-EDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVIN 115 (375)
T ss_dssp HHHHHCCSEEEESSCT-TSHHHHHHHHHSS--CSEEEEEESC-HHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEE
T ss_pred HHHHhCCCEEEEcCCC-ccHHHHHHHHhCC--CCEEEEecCC-HHHHHHHHHHHHhcCccccccccccccccccceeEee
Confidence 3455689999999985 9999997666543 4699999999 999999999996 322 358899
Q ss_pred EcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 99 KGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 99 ~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+.|+...+......||+|.+|+- +....+++.+.+. ++ +||+|.+--+
T Consensus 116 ~~Da~~~~~~~~~~fDvIDiDPf---Gs~~pfldsAi~a--~~-~~Gll~vTaT 163 (375)
T d2dula1 116 HDDANRLMAERHRYFHFIDLDPF---GSPMEFLDTALRS--AK-RRGILGVTAT 163 (375)
T ss_dssp ESCHHHHHHHSTTCEEEEEECCS---SCCHHHHHHHHHH--EE-EEEEEEEEEC
T ss_pred hhhhhhhhHhhcCcCCcccCCCC---CCcHHHHHHHHHH--hc-cCCEEEEEec
Confidence 99999988765678999999984 5668899999998 76 5898877544
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.42 E-value=9.5e-07 Score=75.74 Aligned_cols=98 Identities=9% Similarity=0.057 Sum_probs=79.3
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
|...+......+...+....+...|||++++ .|.=|+.|+..+.. .|+++++|.+ +.+++..+++++ +. .++.+
T Consensus 96 G~~~vQD~aS~l~~~~l~~~~g~~vlD~CAa-pGgKt~~l~~~~~~-~~~i~a~d~~-~~r~~~l~~~~~r~~~-~~i~~ 171 (313)
T d1ixka_ 96 GLIYIQEASSMYPPVALDPKPGEIVADMAAA-PGGKTSYLAQLMRN-DGVIYAFDVD-ENRLRETRLNLSRLGV-LNVIL 171 (313)
T ss_dssp TSEEECCHHHHHHHHHHCCCTTCEEEECCSS-CSHHHHHHHHHTTT-CSEEEEECSC-HHHHHHHHHHHHHHTC-CSEEE
T ss_pred ceEEEecccccchhhcccCCccceeeecccc-hhhhhHhhhhhccc-ccceeeeccC-HHHHHHHHHHHHHHHh-hcccc
Confidence 3444555556777777778888999999985 89889999988776 8999999999 999999999997 66 57888
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCC
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
...|+... +.....||.|++|++=
T Consensus 172 ~~~d~~~~-~~~~~~fD~ILvDaPC 195 (313)
T d1ixka_ 172 FHSSSLHI-GELNVEFDKILLDAPC 195 (313)
T ss_dssp ESSCGGGG-GGGCCCEEEEEEECCT
T ss_pred cccccccc-ccccccccEEEEcccc
Confidence 88888764 3446789999999883
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=5.4e-07 Score=73.19 Aligned_cols=129 Identities=10% Similarity=0.014 Sum_probs=93.1
Q ss_pred hHHHHHHHHhcCC---CCCChhH-H-----HHHHH--HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCc
Q 042616 9 ATKAYLQALKMGK---RGKEPDV-G-----EFISA--LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGV 77 (220)
Q Consensus 9 a~~aY~~~l~~~~---~~~~p~~-~-----~~L~~--La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~ 77 (220)
..+.|.+.+.... ..+++.. - -++.. ++...++++|+|+||| .|.=++.||.+.| +.+++-||.+
T Consensus 23 ~L~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~~~~ilDiGsG-aG~PGi~laI~~p--~~~~~Lves~- 98 (207)
T d1jsxa_ 23 QLIAYVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVVAPYLQGERFIDVGTG-PGLPGIPLSIVRP--EAHFTLLDSL- 98 (207)
T ss_dssp HHHHHHHHHHHHC------------CHHHHHHHHHHHHGGGCCSSEEEEETCT-TTTTHHHHHHHCT--TSEEEEEESC-
T ss_pred HHHHHHHHHHHhCCceeeEECCCHHHHHHHHhcchHhhhhhhcCCceeeeecc-CCceeeehhhhcc--cceEEEEecc-
Confidence 6678888876642 1122111 1 11111 3345667899999997 8999999998765 5999999999
Q ss_pred hhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 78 IGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 78 ~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..++...++... ++ ++|+++++.+++..+ ..+||+|+.=|- ......++.+.+. +++ ||.+++.
T Consensus 99 ~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~~--~~~fD~V~sRA~---~~~~~ll~~~~~~--l~~-~g~~~~~ 164 (207)
T d1jsxa_ 99 GKRVRFLRQVQHELKL-ENIEPVQSRVEEFPS--EPPFDGVISRAF---ASLNDMVSWCHHL--PGE-QGRFYAL 164 (207)
T ss_dssp HHHHHHHHHHHHHTTC-SSEEEEECCTTTSCC--CSCEEEEECSCS---SSHHHHHHHHTTS--EEE-EEEEEEE
T ss_pred hHHHHHHHHHHHHcCC-cceeeeccchhhhcc--ccccceehhhhh---cCHHHHHHHHHHh--cCC-CcEEEEE
Confidence 999999998887 66 689999999998653 368999875443 4778899999998 775 7776664
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.32 E-value=1.6e-06 Score=73.30 Aligned_cols=124 Identities=12% Similarity=0.052 Sum_probs=87.2
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
.+.....++...+....+..+|||++++ .|-=|+.||..+. +|+|+++|.+ +.+++..+++++ |. .++.++..
T Consensus 85 ~vQD~sS~l~~~~L~~~~g~~vLD~CAa-PGgKt~~la~l~~--~~~i~a~d~~-~~R~~~l~~~~~r~g~-~~~~~~~~ 159 (284)
T d1sqga2 85 TVQDASAQGCMTWLAPQNGEHILDLCAA-PGGKTTHILEVAP--EAQVVAVDID-EQRLSRVYDNLKRLGM-KATVKQGD 159 (284)
T ss_dssp EECCHHHHTHHHHHCCCTTCEEEEESCT-TCHHHHHHHHHCT--TCEEEEEESS-TTTHHHHHHHHHHTTC-CCEEEECC
T ss_pred EeccccccccccccCccccceeEeccCc-cccchhhhhhhhh--hhhhhhhhcc-hhhhhhHhhhhhcccc-cceeeecc
Confidence 3555566777777778888999999985 8888888887654 5999999999 999999999998 55 34555555
Q ss_pred chhhhhhhcCCCccEEEEcCCCCC----------------c---cH----HHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDI----------------D---GH----KNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~----------------~---~y----~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+...........||.|++|++=.. . ++ .++++.+.+. |+| ||.||.--...
T Consensus 160 ~~~~~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~--lk~-gG~lvYsTCS~ 233 (284)
T d1sqga2 160 GRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPH--LKT-GGTLVYATCSV 233 (284)
T ss_dssp TTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGG--EEE-EEEEEEEESCC
T ss_pred ccccchhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHh--cCC-CceEEEeeecC
Confidence 543322222467999999987611 1 11 3345555666 765 99888765543
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.26 E-value=1.1e-07 Score=79.35 Aligned_cols=81 Identities=12% Similarity=0.020 Sum_probs=66.6
Q ss_pred hcCCC-CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEE
Q 042616 18 KMGKR-GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIE 96 (220)
Q Consensus 18 ~~~~~-~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve 96 (220)
|.||. .+.+...+-+-..+...+.+.|||||+| +|..|..|+.. +.+|++||.| +..++.+++.+... .+++
T Consensus 6 k~GQnFL~d~~ii~kIv~~~~~~~~d~VLEIGpG-~G~LT~~L~~~----~~~v~aIE~D-~~l~~~l~~~~~~~-~n~~ 78 (245)
T d1yuba_ 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTG-KGHLTTKLAKI----SKQVTSIELD-SHLFNLSSEKLKLN-TRVT 78 (245)
T ss_dssp CSCCCBCCCTTTHHHHHHHCCCCSSEEEEECSCC-CSSCSHHHHHH----SSEEEESSSS-CSSSSSSSCTTTTC-SEEE
T ss_pred CCCCcccCCHHHHHHHHHhcCCCCCCeEEEECCC-ccHHHHHHHhh----cCceeEeeec-ccchhhhhhhhhhc-cchh
Confidence 34665 4667777777777788889999999997 99999999985 5799999999 88888777766543 6899
Q ss_pred EEEcchhhh
Q 042616 97 FVKGDAQKL 105 (220)
Q Consensus 97 ~v~gda~~~ 105 (220)
++++|+.++
T Consensus 79 ii~~D~l~~ 87 (245)
T d1yuba_ 79 LIHQDILQF 87 (245)
T ss_dssp ECCSCCTTT
T ss_pred hhhhhhhcc
Confidence 999999885
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=2.5e-07 Score=76.98 Aligned_cols=108 Identities=10% Similarity=-0.014 Sum_probs=68.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcE-----------------------
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCI----------------------- 95 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~V----------------------- 95 (220)
.+++++||+||| +|..++.++. +. ..+|+++|.+ +.+++.+++.++......
T Consensus 53 ~~g~~vLDiGcG-~g~~~~~~~~--~~-~~~v~~~D~S-~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 127 (263)
T d2g72a1 53 VSGRTLIDIGSG-PTVYQLLSAC--SH-FEDITMTDFL-EVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKE 127 (263)
T ss_dssp SCCSEEEEETCT-TCCGGGTTGG--GG-CSEEEEECSC-HHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHH
T ss_pred CCCcEEEEeccC-CCHHHHHHhc--cc-CCeEEEEeCC-HHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhH
Confidence 357899999997 8866553332 22 5689999999 999999998875110111
Q ss_pred --------EEEEcchhh--hh---hhcCCCccEEEEc----CCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 96 --------EFVKGDAQK--LL---MGDYRGADFVLID----CNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 96 --------e~v~gda~~--~L---~~~~~~~D~VfiD----~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.+...|... .+ +...+.||+|+.= +-. +.++|...++.+.++ |+| ||++|.-..+.
T Consensus 128 ~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~--LkP-GG~li~~~~~~ 201 (263)
T d2g72a1 128 RQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTL--LRP-GGHLLLIGALE 201 (263)
T ss_dssp HHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTT--EEE-EEEEEEEEEES
T ss_pred HHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHH--cCC-CCEEEEecccC
Confidence 122223221 11 1112479999752 211 114678889999998 887 88887765653
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=4.7e-07 Score=73.62 Aligned_cols=110 Identities=14% Similarity=0.001 Sum_probs=69.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCC-----------------------
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYAN----------------------- 93 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~----------------------- 93 (220)
.++++||||||| +|..++.++.. . ..+|+++|.+ +.+++.|+++++ ....
T Consensus 50 ~~g~~vLDlGcG-~G~~~~~~~~~--~-~~~v~giD~S-~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (257)
T d2a14a1 50 LQGDTLIDIGSG-PTIYQVLAACD--S-FQDITLSDFT-DRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKE 124 (257)
T ss_dssp CCEEEEEESSCT-TCCGGGTTGGG--T-EEEEEEEESC-HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCCCEEEEECCC-CCHhHHHHhcc--c-cCcEEEecCC-HHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHH
Confidence 346789999997 89777666542 1 3479999999 999999999875 1110
Q ss_pred -----cE-EEEEcch--hhhh-hhcCCCccEEEEcCCC-----CCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 94 -----CI-EFVKGDA--QKLL-MGDYRGADFVLIDCNI-----DIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 94 -----~V-e~v~gda--~~~L-~~~~~~~D~VfiD~~k-----~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
.+ .....+. ...+ +...+.||+|+.-.-- ...++..+++.+.+. |+| ||.++..+.....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~--Lkp-GG~li~~~~~~~~ 198 (257)
T d2a14a1 125 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASL--LKP-GGHLVTTVTLRLP 198 (257)
T ss_dssp HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTT--EEE-EEEEEEEEESSCC
T ss_pred HHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhc--cCC-CcEEEEEEecccc
Confidence 01 1111111 1111 1114679999864221 013667889999998 886 8888887666543
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=8.2e-06 Score=68.84 Aligned_cols=104 Identities=14% Similarity=0.010 Sum_probs=78.7
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
.+.+...+-+...+...+...|||||+| .|..|..|+.. +.+|++||.| +..++..++.+. ...++++++++
T Consensus 4 L~d~~i~~kIv~~~~~~~~d~VlEIGPG-~G~LT~~Ll~~----~~~v~aiE~D-~~l~~~L~~~~~~~~~~~~~~~i~~ 77 (278)
T d1zq9a1 4 LKNPLIINSIIDKAALRPTDVVLEVGPG-TGNMTVKLLEK----AKKVVACELD-PRLVAELHKRVQGTPVASKLQVLVG 77 (278)
T ss_dssp ECCHHHHHHHHHHTCCCTTCEEEEECCT-TSTTHHHHHHH----SSEEEEEESC-HHHHHHHHHHHTTSTTGGGEEEEES
T ss_pred cCCHHHHHHHHHHhCCCCCCEEEEECCC-chHHHHHHHhc----CCcEEEEEEc-cchhHHHHHHHhhhccccchhhhHH
Confidence 3567777777777777788999999997 99999999975 5799999999 999999998886 33478999999
Q ss_pred chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
|+.+.- ...++.|+-.-+- .-...++..+...
T Consensus 78 D~l~~~---~~~~~~vV~NLPY--~Iss~il~~~~~~ 109 (278)
T d1zq9a1 78 DVLKTD---LPFFDTCVANLPY--QISSPFVFKLLLH 109 (278)
T ss_dssp CTTTSC---CCCCSEEEEECCG--GGHHHHHHHHHHC
T ss_pred HHhhhh---hhhhhhhhcchHH--HHHHHHHHHHHhh
Confidence 998752 2345666643333 4446666665543
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.16 E-value=9.3e-07 Score=73.76 Aligned_cols=106 Identities=8% Similarity=-0.162 Sum_probs=74.9
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA 102 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda 102 (220)
.+.+...+-+...+...+.+.|||||+| .|+.|-.|++. +.+|++||.| +..++..++.+... ++++++++|+
T Consensus 4 L~d~~~~~~Iv~~~~~~~~d~vlEIGpG-~G~LT~~Ll~~----~~~v~aiEiD-~~l~~~L~~~~~~~-~~~~ii~~D~ 76 (252)
T d1qyra_ 4 LNDQFVIDSIVSAINPQKGQAMVEIGPG-LAALTEPVGER----LDQLTVIELD-RDLAARLQTHPFLG-PKLTIYQQDA 76 (252)
T ss_dssp ECCHHHHHHHHHHHCCCTTCCEEEECCT-TTTTHHHHHTT----CSCEEEECCC-HHHHHHHHTCTTTG-GGEEEECSCG
T ss_pred cCCHHHHHHHHHhcCCCCCCEEEEECCC-chHHHHHHHcc----CCceEEEEec-cchhHHHHHHhhhc-cchhHHhhhh
Confidence 3566777777777777889999999997 99999999874 6799999999 99998888755422 6899999999
Q ss_pred hhhh-hhc---CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 103 QKLL-MGD---YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 103 ~~~L-~~~---~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
.++- +.+ .+..-.|+-.-+- .--.+++..+...
T Consensus 77 l~~~~~~~~~~~~~~~~vvgNlPY--~Iss~Il~~l~~~ 113 (252)
T d1qyra_ 77 MTFNFGELAEKMGQPLRVFGNLPY--NISTPLMFHLFSY 113 (252)
T ss_dssp GGCCHHHHHHHHTSCEEEEEECCT--TTHHHHHHHHHTT
T ss_pred hhhcccccccccCCCeEEEecchH--HHHHHHHHHhccc
Confidence 8742 111 1222245533333 4446666665443
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.13 E-value=9.8e-06 Score=64.09 Aligned_cols=86 Identities=16% Similarity=0.079 Sum_probs=67.9
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ 103 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~ 103 (220)
.++.+++||..++...+..+|||.||| +|.+.+.+.+.... ...++++|.+ +..++ +..+..++++|..
T Consensus 3 TP~~i~~~m~~l~~~~~~~~IlDp~~G-~G~fl~~~~~~~~~-~~~i~g~ei~-~~~~~--------~~~~~~~~~~~~~ 71 (223)
T d2ih2a1 3 TPPEVVDFMVSLAEAPRGGRVLEPACA-HGPFLRAFREAHGT-AYRFVGVEID-PKALD--------LPPWAEGILADFL 71 (223)
T ss_dssp CCHHHHHHHHHHCCCCTTCEEEEETCT-TCHHHHHHHHHHCS-CSEEEEEESC-TTTCC--------CCTTEEEEESCGG
T ss_pred CCHHHHHHHHHhcCCCCcCEEEECCCc-hHHHHHHHHHhccc-cceEEeeecC-HHHHh--------hcccceeeeeehh
Confidence 467789999999999999999999997 99988888877665 7889999999 65432 2245678888877
Q ss_pred hhhhhcCCCccEEEEcCCC
Q 042616 104 KLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k 122 (220)
...+ ...||+++.+.+-
T Consensus 72 ~~~~--~~~fd~ii~npP~ 88 (223)
T d2ih2a1 72 LWEP--GEAFDLILGNPPY 88 (223)
T ss_dssp GCCC--SSCEEEEEECCCC
T ss_pred cccc--ccccceecccCcc
Confidence 6543 3689999988763
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.09 E-value=3e-06 Score=70.60 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=62.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--c--------cCCcEEEEEcchhhhhhhcCC
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--R--------YANCIEFVKGDAQKLLMGDYR 111 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g--------~~~~Ve~v~gda~~~L~~~~~ 111 (220)
.+|||.-+| .|.-++.||.. +++|+.||.+ |..+...+.+++ . ...+++++++|+.++|.....
T Consensus 90 ~~VlD~TaG-lG~Da~vlA~~----G~~V~~iEr~-p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~ 163 (250)
T d2oyra1 90 PDVVDATAG-LGRDAFVLASV----GCRVRMLERN-PVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (250)
T ss_dssp CCEEETTCT-TCHHHHHHHHH----TCCEEEEECC-HHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSS
T ss_pred CEEEECCCc-ccHHHHHHHhC----CCEEEEEccC-HHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCC
Confidence 489998654 99999999875 7899999999 998888777765 1 124799999999999987667
Q ss_pred CccEEEEcCCC
Q 042616 112 GADFVLIDCNI 122 (220)
Q Consensus 112 ~~D~VfiD~~k 122 (220)
.||+|++|+--
T Consensus 164 ~~DvIYlDPMF 174 (250)
T d2oyra1 164 RPQVVYLDPMF 174 (250)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 89999999844
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.07 E-value=1.2e-05 Score=66.48 Aligned_cols=100 Identities=13% Similarity=-0.020 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhh--cCCCccE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMG--DYRGADF 115 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~--~~~~~D~ 115 (220)
.+.+++||||| .|+=++.||-+.+ +.+++-||.+ ..++...+...+ ++ ++++++++.++++-.. ..+.||+
T Consensus 70 ~~~~ilDiGSG-aGfPGi~laI~~p--~~~v~Lves~-~KK~~FL~~v~~~L~L-~n~~i~~~R~E~~~~~~~~~~~~D~ 144 (239)
T d1xdza_ 70 QVNTICDVGAG-AGFPSLPIKICFP--HLHVTIVDSL-NKRITFLEKLSEALQL-ENTTFCHDRAETFGQRKDVRESYDI 144 (239)
T ss_dssp GCCEEEEECSS-SCTTHHHHHHHCT--TCEEEEEESC-HHHHHHHHHHHHHHTC-SSEEEEESCHHHHTTCTTTTTCEEE
T ss_pred CCCeEEeecCC-CchHHHHHHHhCC--Cccceeecch-HHHHHHHHHHHHHhCC-CCcEEEeehhhhccccccccccceE
Confidence 46899999997 7999999998766 5899999999 999998888877 77 6899999999986532 2368999
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+-=+- .....+++.+.+. +++ ||.+++.
T Consensus 145 v~sRAv---a~l~~ll~~~~~~--l~~-~g~~i~~ 173 (239)
T d1xdza_ 145 VTARAV---ARLSVLSELCLPL--VKK-NGLFVAL 173 (239)
T ss_dssp EEEECC---SCHHHHHHHHGGG--EEE-EEEEEEE
T ss_pred EEEhhh---hCHHHHHHHHhhh--ccc-CCEEEEE
Confidence 997654 4678899999998 875 7776663
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.99 E-value=1.4e-05 Score=67.69 Aligned_cols=126 Identities=10% Similarity=0.019 Sum_probs=85.3
Q ss_pred CCCChhHHHHHHHHH----hhCCCCEEEEEcCCchHHHHHHHHHHcCCC---CcEEEEEeCCchhHHHHHHHHhcccCCc
Q 042616 22 RGKEPDVGEFISALA----AGNNAQLIVMACSSIAVSRTLALVAAARQT---GGRVVCILSGVIGDIDASKKSLGRYANC 94 (220)
Q Consensus 22 ~~~~p~~~~~L~~La----~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~---~grV~tIE~d~~~~~~~Ar~~l~g~~~~ 94 (220)
.+.++..++++..++ ...+..+|+|.+|| +|...+.+...+... ..+++++|.| +..++.|+.++.-....
T Consensus 95 ~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~G-sG~~l~~~~~~l~~~~~~~~~~~g~di~-~~~~~~a~~~~~~~~~~ 172 (328)
T d2f8la1 95 QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACG-TANLLTTVINQLELKGDVDVHASGVDVD-DLLISLALVGADLQRQK 172 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCT-TSHHHHHHHHHHHTTSSCEEEEEEEESC-HHHHHHHHHHHHHHTCC
T ss_pred EECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCC-cchhHHHHHHHHHhccCccceEEEeccc-HHHHHHHHHHHHHhhhh
Confidence 345666777776654 34566789999997 898877766543321 3579999999 99999999988732356
Q ss_pred EEEEEcchhhhhhhcCCCccEEEEcCCCCC-------------------ccHHHHHHHHHhhcCCCCCCEE--EEEecCC
Q 042616 95 IEFVKGDAQKLLMGDYRGADFVLIDCNIDI-------------------DGHKNVFRAAKESVMHGSGAGV--IVGYNAL 153 (220)
Q Consensus 95 Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~-------------------~~y~~~l~~l~~~~~L~~~Ggv--iv~dNv~ 153 (220)
+.+.++|.....+ ..+||+|+.+++-.. ..+.-.++.+... |++ ||. +|..+-+
T Consensus 173 ~~~~~~d~~~~~~--~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~--Lk~-~G~~~~I~p~~~ 247 (328)
T d2f8la1 173 MTLLHQDGLANLL--VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRY--TKP-GGYLFFLVPDAM 247 (328)
T ss_dssp CEEEESCTTSCCC--CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHT--EEE-EEEEEEEEEGGG
T ss_pred hhhhccccccccc--cccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHh--cCC-CCceEEEecCcc
Confidence 7888888766443 478999999987410 0123357777777 876 553 3444444
Q ss_pred C
Q 042616 154 P 154 (220)
Q Consensus 154 ~ 154 (220)
.
T Consensus 248 l 248 (328)
T d2f8la1 248 F 248 (328)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.87 E-value=2.3e-05 Score=59.86 Aligned_cols=103 Identities=16% Similarity=0.094 Sum_probs=71.1
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
+...+.++||-+|+|++|..++.+|++. +.+|+++|.+ +++++.+++.- ....+.....|..+.+......+|.
T Consensus 23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~---G~~Vi~~~~~-~~~~~~a~~~G--a~~~i~~~~~~~~~~~~~~~~g~~~ 96 (166)
T d1llua2 23 TNARPGQWVAISGIGGLGHVAVQYARAM---GLHVAAIDID-DAKLELARKLG--ASLTVNARQEDPVEAIQRDIGGAHG 96 (166)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHT---TCEEEEEESC-HHHHHHHHHTT--CSEEEETTTSCHHHHHHHHHSSEEE
T ss_pred hCCCCCCEEEEeeccccHHHHHHHHHHc---CCccceecch-hhHHHhhhccC--ccccccccchhHHHHHHHhhcCCcc
Confidence 5567789999999999999999999875 6799999999 99999988752 2111111122333333332355777
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
++++... ...++.+.+. |++ ||.++.-.+
T Consensus 97 ~i~~~~~-----~~~~~~~~~~--l~~-~G~iv~~G~ 125 (166)
T d1llua2 97 VLVTAVS-----NSAFGQAIGM--ARR-GGTIALVGL 125 (166)
T ss_dssp EEECCSC-----HHHHHHHHTT--EEE-EEEEEECCC
T ss_pred ccccccc-----chHHHHHHHH--hcC-CcEEEEEEe
Confidence 7777665 3457778887 775 888877543
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.86 E-value=8.1e-05 Score=58.70 Aligned_cols=109 Identities=21% Similarity=0.189 Sum_probs=73.5
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh---h
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL---L 106 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~---L 106 (220)
|.|..| ...+...+||...|+-|++. .|... +|+|+++|.| |++++.|++.. ..++.+++++..++ +
T Consensus 9 Evl~~l-~~~~g~~~vD~T~G~GGhs~-~iL~~----~~~viaiD~D-~~ai~~a~~~~---~~~~~~~~~~f~~~~~~l 78 (182)
T d1wg8a2 9 EALDLL-AVRPGGVYVDATLGGAGHAR-GILER----GGRVIGLDQD-PEAVARAKGLH---LPGLTVVQGNFRHLKRHL 78 (182)
T ss_dssp HHHHHH-TCCTTCEEEETTCTTSHHHH-HHHHT----TCEEEEEESC-HHHHHHHHHTC---CTTEEEEESCGGGHHHHH
T ss_pred HHHHhc-CCCCCCEEEEeCCCCcHHHH-HHhcc----cCcEEEEhhh-hhHHHHHhhcc---ccceeEeehHHHHHHHHH
Confidence 445444 56778899996555445554 44442 6899999999 99999888743 36799999876553 3
Q ss_pred hhc-CCCccEEEEcCCCCCc----------cHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 107 MGD-YRGADFVLIDCNIDID----------GHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 107 ~~~-~~~~D~VfiD~~k~~~----------~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+.. .+.+|.|++|...... .....|+..... |++ ||.+++-+
T Consensus 79 ~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~--lk~-gg~~~ii~ 131 (182)
T d1wg8a2 79 AALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEV--LAP-GGRLVVIA 131 (182)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHH--EEE-EEEEEEEE
T ss_pred HHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhh--hCC-CCeEEEEe
Confidence 332 3679999999876110 113356777777 765 88777643
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.84 E-value=3.5e-05 Score=58.91 Aligned_cols=103 Identities=11% Similarity=0.105 Sum_probs=70.1
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE----cchhh---hhhh
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK----GDAQK---LLMG 108 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~----gda~~---~L~~ 108 (220)
+...+.++||-+|+|++|..++.+|++. +.+|+.+|.+ +++.+.|++.-. ...+.. .+..+ .+..
T Consensus 22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~---Ga~vi~v~~~-~~r~~~a~~~ga----~~~~~~~~~~~~~~~~~~~~~~ 93 (170)
T d1e3ja2 22 AGVQLGTTVLVIGAGPIGLVSVLAAKAY---GAFVVCTARS-PRRLEVAKNCGA----DVTLVVDPAKEEESSIIERIRS 93 (170)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHT---TCEEEEEESC-HHHHHHHHHTTC----SEEEECCTTTSCHHHHHHHHHH
T ss_pred hCCCCCCEEEEEcccccchhhHhhHhhh---cccccccchH-HHHHHHHHHcCC----cEEEeccccccccchhhhhhhc
Confidence 4456679999999999999999999875 6799999999 999999998642 112221 11122 2222
Q ss_pred c-CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 109 D-YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 109 ~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
. ...+|+|| |+.- ....++.+.+. +++ ||.++.-....
T Consensus 94 ~~g~g~D~vi-d~~g----~~~~~~~a~~~--~~~-~G~iv~~G~~~ 132 (170)
T d1e3ja2 94 AIGDLPNVTI-DCSG----NEKCITIGINI--TRT-GGTLMLVGMGS 132 (170)
T ss_dssp HSSSCCSEEE-ECSC----CHHHHHHHHHH--SCT-TCEEEECSCCS
T ss_pred ccccCCceee-ecCC----ChHHHHHHHHH--Hhc-CCceEEEecCC
Confidence 1 35689775 4433 24567778787 775 88888766543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.76 E-value=1.7e-05 Score=61.04 Aligned_cols=103 Identities=10% Similarity=0.022 Sum_probs=68.8
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE-cchhhhhhhcCCCcc
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK-GDAQKLLMGDYRGAD 114 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~-gda~~~L~~~~~~~D 114 (220)
+...+.++||.+|+|++|..++.+|++. |.+|++++.+ +++++.|++. |. + +++. .+-.+......+.+|
T Consensus 23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~---G~~vi~~~~~-~~k~~~a~~l--Ga-~--~~i~~~~~~~~~~~~~~~~d 93 (168)
T d1piwa2 23 NGCGPGKKVGIVGLGGIGSMGTLISKAM---GAETYVISRS-SRKREDAMKM--GA-D--HYIATLEEGDWGEKYFDTFD 93 (168)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHH---TCEEEEEESS-STTHHHHHHH--TC-S--EEEEGGGTSCHHHHSCSCEE
T ss_pred hCcCCCCEEEEECCCCcchhHHHHhhhc---cccccccccc-hhHHHHhhcc--CC-c--EEeeccchHHHHHhhhcccc
Confidence 3456679999999998999999999875 6799999999 9999999876 22 2 2222 112233334457899
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+++.-... .....++.+.+. ++| ||.++.-.+.
T Consensus 94 ~vi~~~~~---~~~~~~~~~~~~--l~~-~G~iv~~G~~ 126 (168)
T d1piwa2 94 LIVVCASS---LTDIDFNIMPKA--MKV-GGRIVSISIP 126 (168)
T ss_dssp EEEECCSC---STTCCTTTGGGG--EEE-EEEEEECCCC
T ss_pred eEEEEecC---CccchHHHHHHH--hhc-cceEEEeccc
Confidence 88753222 222234566666 765 7888776543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.73 E-value=5e-05 Score=58.71 Aligned_cols=103 Identities=13% Similarity=0.081 Sum_probs=70.9
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADF 115 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~ 115 (220)
...+.++||-+|+|++|..++.+|+++. ..+|+.+|.+ +++++.|++. |...-+.....|..+.+.++ .+.+|+
T Consensus 25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g--~~~v~~~~~~-~~k~~~a~~~--Ga~~~i~~~~~~~~~~i~~~t~gg~D~ 99 (174)
T d1f8fa2 25 KVTPASSFVTWGAGAVGLSALLAAKVCG--ASIIIAVDIV-ESRLELAKQL--GATHVINSKTQDPVAAIKEITDGGVNF 99 (174)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHT--CSEEEEEESC-HHHHHHHHHH--TCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred CCCCCCEEEEeCCCHHHhhhhhcccccc--cceeeeeccH-HHHHHHHHHc--CCeEEEeCCCcCHHHHHHHHcCCCCcE
Confidence 4566789999999999999999999874 3678899999 9999999876 22111222223444444333 357998
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
||-.... ...++.+.+. ++| +|.++.-.+
T Consensus 100 vid~~G~-----~~~~~~~~~~--~~~-~G~i~~~G~ 128 (174)
T d1f8fa2 100 ALESTGS-----PEILKQGVDA--LGI-LGKIAVVGA 128 (174)
T ss_dssp EEECSCC-----HHHHHHHHHT--EEE-EEEEEECCC
T ss_pred EEEcCCc-----HHHHHHHHhc--ccC-ceEEEEEee
Confidence 8766554 3566777777 765 787776544
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=97.70 E-value=6.6e-05 Score=58.25 Aligned_cols=106 Identities=13% Similarity=0.072 Sum_probs=70.8
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc--hhhhhhhc-CCC
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD--AQKLLMGD-YRG 112 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd--a~~~L~~~-~~~ 112 (220)
+...+.+.||-+|+|+.|.+++.+++++. ..+|+++|++ +++++.|+++=. ...|.....| ..+..... .+.
T Consensus 23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G--~~~Vi~~d~~-~~kl~~a~~lGa--~~~i~~~~~d~~~~~~~~~~~~~G 97 (174)
T d1p0fa2 23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAG--ASRIIGVGTH-KDKFPKAIELGA--TECLNPKDYDKPIYEVICEKTNGG 97 (174)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECSC-GGGHHHHHHTTC--SEEECGGGCSSCHHHHHHHHTTSC
T ss_pred hCCCCCCEEEEECCCchhHHHHHHHHHcC--CceeeccCCh-HHHHHHHHHcCC--cEEEcCCCchhHHHHHHHHhcCCC
Confidence 45567799999999999999999999874 3789999999 999999988522 1112222233 23333222 357
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+|.+|..... ...++..... +++++|.++.-.+.
T Consensus 98 ~d~vid~~g~-----~~~~~~~~~~--~~~~~G~~v~vG~~ 131 (174)
T d1p0fa2 98 VDYAVECAGR-----IETMMNALQS--TYCGSGVTVVLGLA 131 (174)
T ss_dssp BSEEEECSCC-----HHHHHHHHHT--BCTTTCEEEECCCC
T ss_pred CcEEEEcCCC-----chHHHHHHHH--HHHhcCceEEEEEe
Confidence 9999977665 3445555555 54545777665544
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.69 E-value=3.8e-05 Score=59.74 Aligned_cols=107 Identities=17% Similarity=0.120 Sum_probs=70.5
Q ss_pred HHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CC
Q 042616 34 ALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YR 111 (220)
Q Consensus 34 ~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~ 111 (220)
..+...+.+.||-+|+|++|.+++.+|++.. ..+|+++|++ +++.+.|++.= ...-|.....+..+.+.++ ..
T Consensus 21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~G--a~~Vi~~d~~-~~r~~~a~~lG--a~~~i~~~~~~~~~~v~~~t~g~ 95 (174)
T d1jqba2 21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRG--AGRIIGVGSR-PICVEAAKFYG--ATDILNYKNGHIEDQVMKLTNGK 95 (174)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTT--CSCEEEECCC-HHHHHHHHHHT--CSEEECGGGSCHHHHHHHHTTTS
T ss_pred HHhCCCCCCEEEEEcCCcchhhhhhhhhccc--ccccccccch-hhhHHHHHhhC--ccccccccchhHHHHHHHHhhcc
Confidence 3456677899999999989999999998753 2589999999 99999998752 2111222223333333333 24
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+|+||--... . ..++.+.+. ++| ||.++.-.+.
T Consensus 96 G~D~vid~~g~--~---~~~~~a~~~--~~~-~G~iv~~G~~ 129 (174)
T d1jqba2 96 GVDRVIMAGGG--S---ETLSQAVKM--VKP-GGIISNINYH 129 (174)
T ss_dssp CEEEEEECSSC--T---THHHHHHHH--EEE-EEEEEECCCC
T ss_pred CcceEEEccCC--H---HHHHHHHHH--Hhc-CCEEEEEeec
Confidence 69987654443 2 345666676 665 8888776544
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=0.00024 Score=54.26 Aligned_cols=104 Identities=12% Similarity=-0.008 Sum_probs=70.0
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEE-EEcchhhhhhhc----C
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEF-VKGDAQKLLMGD----Y 110 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~-v~gda~~~L~~~----~ 110 (220)
+...+.+.||-+|+|+.|..++.++.+.. ..+|+.+|++ +++++.|++.- . +.+.. -..+..+....+ .
T Consensus 22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G--~~~Vi~~d~~-~~rl~~a~~~G--a-~~~~~~~~~~~~~~~~~~~~~~g 95 (171)
T d1pl8a2 22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMG--AAQVVVTDLS-ATRLSKAKEIG--A-DLVLQISKESPQEIARKVEGQLG 95 (171)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESC-HHHHHHHHHTT--C-SEEEECSSCCHHHHHHHHHHHHT
T ss_pred hCCCCCCEEEEECCCccHHHHHHHHHHcC--CceEEeccCC-HHHHHHHHHhC--C-cccccccccccccccccccccCC
Confidence 34566789999999999999999998863 2489999999 99999998752 2 22222 122333322111 3
Q ss_pred CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 111 RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 111 ~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
..+|++|--... ...++.+... +++ ||.++.-...
T Consensus 96 ~g~Dvvid~~G~-----~~~~~~a~~~--~~~-gG~iv~~G~~ 130 (171)
T d1pl8a2 96 CKPEVTIECTGA-----EASIQAGIYA--TRS-GGTLVLVGLG 130 (171)
T ss_dssp SCCSEEEECSCC-----HHHHHHHHHH--SCT-TCEEEECSCC
T ss_pred CCceEEEeccCC-----chhHHHHHHH--hcC-CCEEEEEecC
Confidence 578986643333 4567888887 775 7877776554
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.64 E-value=5.2e-05 Score=58.79 Aligned_cols=104 Identities=12% Similarity=0.067 Sum_probs=67.2
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh---hhhc--CC
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL---LMGD--YR 111 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~---L~~~--~~ 111 (220)
+..+.++||-+|+|++|..++.+|++.. ..+|+.+|.+ +++.+.|++.- ...-+.....+..+. +.++ ..
T Consensus 25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~G--a~~Vi~~~~~-~~~~~~a~~lG--a~~vi~~~~~~~~~~~~~i~~~~~~~ 99 (182)
T d1vj0a2 25 ESFAGKTVVIQGAGPLGLFGVVIARSLG--AENVIVIAGS-PNRLKLAEEIG--ADLTLNRRETSVEERRKAIMDITHGR 99 (182)
T ss_dssp SCCBTCEEEEECCSHHHHHHHHHHHHTT--BSEEEEEESC-HHHHHHHHHTT--CSEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred CCCCCCEEEEECCCccchhheecccccc--cccccccccc-ccccccccccc--ceEEEeccccchHHHHHHHHHhhCCC
Confidence 3455699999999999999999999853 2489999999 99999998752 111122222333332 2222 24
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+|+||--... ...++.+.+. +++ ||.++.-.+.
T Consensus 100 g~Dvvid~vG~-----~~~~~~a~~~--l~~-~G~iv~~G~~ 133 (182)
T d1vj0a2 100 GADFILEATGD-----SRALLEGSEL--LRR-GGFYSVAGVA 133 (182)
T ss_dssp CEEEEEECSSC-----TTHHHHHHHH--EEE-EEEEEECCCC
T ss_pred CceEEeecCCc-----hhHHHHHHHH--hcC-CCEEEEEeec
Confidence 69987743332 2345666676 665 8887766544
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.60 E-value=4.2e-05 Score=62.83 Aligned_cols=100 Identities=13% Similarity=0.124 Sum_probs=70.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.+.++|||||+| .|..++.++++-|. -+++..|.- +.++.+ +..++|+++.||..+-. .++|++++
T Consensus 79 ~~~~~vvDvGGG-~G~~~~~l~~~~P~--l~~~v~Dlp--~vi~~~-----~~~~rv~~~~gD~f~~~----p~aD~~~l 144 (244)
T d1fp2a2 79 DGLESIVDVGGG-TGTTAKIICETFPK--LKCIVFDRP--QVVENL-----SGSNNLTYVGGDMFTSI----PNADAVLL 144 (244)
T ss_dssp TTCSEEEEETCT-TSHHHHHHHHHCTT--CEEEEEECH--HHHTTC-----CCBTTEEEEECCTTTCC----CCCSEEEE
T ss_pred cCceEEEEecCC-ccHHHHHHHHhCCC--CeEEEecCH--HHHHhC-----cccCceEEEecCcccCC----CCCcEEEE
Confidence 456889999975 99999999998764 688888874 443221 34588999999987633 35799997
Q ss_pred cCCCC---CccHHHHHHHHHhhcCCCCC---CEEEEEecCCC
Q 042616 119 DCNID---IDGHKNVFRAAKESVMHGSG---AGVIVGYNALP 154 (220)
Q Consensus 119 D~~k~---~~~y~~~l~~l~~~~~L~~~---Ggviv~dNv~~ 154 (220)
-.--+ .++-.++|+.+.+. |+|. |-++|++.++.
T Consensus 145 ~~vLHdw~d~~~~~iL~~~~~a--l~pgg~~~~lli~e~~~~ 184 (244)
T d1fp2a2 145 KYILHNWTDKDCLRILKKCKEA--VTNDGKRGKVTIIDMVID 184 (244)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHH--HSGGGCCCEEEEEECEEC
T ss_pred EeecccCChHHHHHHHHHHHHH--cCcccCCcEEEEEEeecC
Confidence 43320 04446788888888 7764 34677776664
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.60 E-value=0.00011 Score=57.98 Aligned_cols=123 Identities=12% Similarity=0.052 Sum_probs=73.2
Q ss_pred CCChhHHHHHHHHHhhC-CCCEEEEEcCCchHHHH----HHHHHHcCCCC--cEEEEEeCCchhHHHHHHHHh-------
Q 042616 23 GKEPDVGEFISALAAGN-NAQLIVMACSSIAVSRT----LALVAAARQTG--GRVVCILSGVIGDIDASKKSL------- 88 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~-~a~~ILEIGtg~~G~sT----l~LA~A~~~~~--grV~tIE~d~~~~~~~Ar~~l------- 88 (220)
+-+|.+=++|...+... ++-+|+.+||| +|--+ +.|.++....+ =+|++.|.+ +..++.|++..
T Consensus 6 FRd~~~f~~L~~~~~~~~~~lrIwsaGCs-tGeE~YSlA~~l~e~~~~~~~~~~I~atDi~-~~~l~~A~~g~y~~~~~~ 83 (193)
T d1af7a2 6 FREAHHFPILAEHARRRHGEYRVWSAAAS-TGEEPYSIAITLADALGMAPGRWKVFASDID-TEVLEKARSGIYRLSELK 83 (193)
T ss_dssp TTTTTHHHHHHHHHHHSCSCEEEEESCCT-TTHHHHHHHHHHHHHHCSCTTSEEEEEEESC-HHHHHHHHHTEEEGGGGT
T ss_pred cCCcHHHHHHHHHHhccCCCeEEEEeCCC-CchhHHHHHHHHHHhhhhcCCceEEEeecCC-hHHhhHhhcCcccHHHHh
Confidence 34555556666665443 45699999995 89643 33444433212 279999999 99999998432
Q ss_pred -----------c--cc------------CCcEEEEEcchhhhhhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCC
Q 042616 89 -----------G--RY------------ANCIEFVKGDAQKLLMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMH 140 (220)
Q Consensus 89 -----------~--g~------------~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L 140 (220)
. +. ...+++...+..+..+...++||+||.=.-- +.+.-.++++.+... |
T Consensus 84 ~~~~~~~~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~--L 161 (193)
T d1af7a2 84 TLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPL--L 161 (193)
T ss_dssp TSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGG--E
T ss_pred hhhHHHHhhceeecCCCccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHH--h
Confidence 1 00 0113344444333222224689999943211 113346788989988 8
Q ss_pred CCCCEEEEEe
Q 042616 141 GSGAGVIVGY 150 (220)
Q Consensus 141 ~~~Ggviv~d 150 (220)
+| ||+++.=
T Consensus 162 ~p-GG~L~lG 170 (193)
T d1af7a2 162 KP-DGLLFAG 170 (193)
T ss_dssp EE-EEEEEEC
T ss_pred CC-CcEEEEe
Confidence 76 8887653
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.58 E-value=3.4e-05 Score=63.46 Aligned_cols=100 Identities=12% Similarity=0.047 Sum_probs=71.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.+.++|||||+| .|..++.|+++.| +-+++..|.- +.++. ....++|+++.||..+.+| ..|++++
T Consensus 80 ~~~~~vlDiGGG-~G~~~~~l~~~~P--~l~~~v~Dlp--~vi~~-----~~~~~ri~~~~gd~~~~~p----~~D~~~l 145 (244)
T d1fp1d2 80 EGISTLVDVGGG-SGRNLELIISKYP--LIKGINFDLP--QVIEN-----APPLSGIEHVGGDMFASVP----QGDAMIL 145 (244)
T ss_dssp TTCSEEEEETCT-TSHHHHHHHHHCT--TCEEEEEECH--HHHTT-----CCCCTTEEEEECCTTTCCC----CEEEEEE
T ss_pred cCCcEEEEecCC-CcHHHHHHHHHCC--CCeEEEecch--hhhhc-----cCCCCCeEEecCCcccccc----cceEEEE
Confidence 446899999975 9999999999876 4788888874 44321 1334889999999876544 4599987
Q ss_pred cCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 119 DCNIDI---DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 119 D~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
-.-.+. ++-..+|+.+.+. |+|.|-+||+|.++.
T Consensus 146 ~~vLh~~~de~~~~iL~~~~~a--L~pgg~llI~e~v~~ 182 (244)
T d1fp1d2 146 KAVCHNWSDEKCIEFLSNCHKA--LSPNGKVIIVEFILP 182 (244)
T ss_dssp ESSGGGSCHHHHHHHHHHHHHH--EEEEEEEEEEEEEEC
T ss_pred ehhhhhCCHHHHHHHHHHHHHH--cCCCcEEEEEEEEec
Confidence 544311 3446778888898 887555677776553
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.55 E-value=0.00012 Score=55.33 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=71.1
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
.+...+.++||-.|+|++|..++.++.+. +.+|+.++.+ +++.+.++++- ...-+.....|..+.+......+|
T Consensus 22 ~~~~~~g~~vlv~G~G~iG~~a~~~a~~~---g~~v~~~~~~-~~r~~~~k~~G--a~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T d1rjwa2 22 VTGAKPGEWVAIYGIGGLGHVAVQYAKAM---GLNVVAVDIG-DEKLELAKELG--ADLVVNPLKEDAAKFMKEKVGGVH 95 (168)
T ss_dssp HHTCCTTCEEEEECCSTTHHHHHHHHHHT---TCEEEEECSC-HHHHHHHHHTT--CSEEECTTTSCHHHHHHHHHSSEE
T ss_pred HhCCCCCCEEEEeecccchhhhhHHHhcC---CCeEeccCCC-HHHhhhhhhcC--cceecccccchhhhhcccccCCCc
Confidence 34566789999999999999999999874 6799999999 99999888852 111111112344444444345677
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.+++|+.- ...++...+. ++| ||.++.-.+
T Consensus 96 ~~v~~~~~-----~~~~~~a~~~--l~~-~G~i~~~g~ 125 (168)
T d1rjwa2 96 AAVVTAVS-----KPAFQSAYNS--IRR-GGACVLVGL 125 (168)
T ss_dssp EEEESSCC-----HHHHHHHHHH--EEE-EEEEEECCC
T ss_pred eEEeecCC-----HHHHHHHHHH--hcc-CCceEeccc
Confidence 77777654 4567888887 766 777776543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.53 E-value=2.4e-05 Score=64.03 Aligned_cols=99 Identities=16% Similarity=0.069 Sum_probs=70.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+.++|||||+| .|..++.|+++-| +.+++..|.- ..++.+ ...++++++.+|..+-+|. .|++++-
T Consensus 81 ~~~~vvDvGGG-~G~~~~~l~~~~P--~l~~~v~Dlp--~vi~~~-----~~~~r~~~~~~d~~~~~P~----ad~~~l~ 146 (243)
T d1kyza2 81 GLKSLVDVGGG-TGAVINTIVSKYP--TIKGINFDLP--HVIEDA-----PSYPGVEHVGGDMFVSIPK----ADAVFMK 146 (243)
T ss_dssp SCSEEEEETCT-TSHHHHHHHHHCT--TSEEEEEECT--TTTTTC-----CCCTTEEEEECCTTTCCCC----CSCEECS
T ss_pred CCcEEEEecCC-CcHHHHHHHHHCC--CCeEEEcccH--Hhhhhc-----ccCCceEEecccccccCCC----cceEEEE
Confidence 35789999975 9999999999876 5789999985 333211 3347899999998775553 4555542
Q ss_pred CCC---CCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 120 CNI---DIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 120 ~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.-. +..+...+|+.+.+. |+|.|.++|+|.++.
T Consensus 147 ~vlh~~~d~~~~~iL~~~~~a--l~pgg~~li~d~~~~ 182 (243)
T d1kyza2 147 WICHDWSDEHCLKFLKNCYEA--LPDNGKVIVAECILP 182 (243)
T ss_dssp SSSTTSCHHHHHHHHHHHHHH--CCSSSCEEEEECEEC
T ss_pred EEeecCCHHHHHHHHHHHHHh--cCCCceEEEEEEEec
Confidence 222 114457789999999 888777788876664
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.51 E-value=0.00028 Score=54.63 Aligned_cols=105 Identities=11% Similarity=0.005 Sum_probs=68.4
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch--hhhhhhc-CCCcc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA--QKLLMGD-YRGAD 114 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda--~~~L~~~-~~~~D 114 (220)
..+.+.||-+|+|+.|.+++.++++.. ..+|+++|++ +++++.|++.-.. ..|.....|. ....... ...+|
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G--~~~Vi~vd~~-~~kl~~Ak~~GA~--~~in~~~~~~~~~~~~~~~~g~G~d 101 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAG--ASRIIGIDLN-KDKFEKAMAVGAT--ECISPKDSTKPISEVLSEMTGNNVG 101 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSC-GGGHHHHHHHTCS--EEECGGGCSSCHHHHHHHHHTSCCC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcC--CceEEEecCc-HHHHHHHHhcCCc--EEECccccchHHHHHHHHhccccce
Confidence 455788999999999999999998753 3799999999 9999999997431 1111112221 2222111 46799
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.++..... ...++..... +.+++|.+|.-.+..
T Consensus 102 ~vi~~~g~-----~~~~~~a~~~--~~~~~G~~v~vG~~~ 134 (176)
T d1d1ta2 102 YTFEVIGH-----LETMIDALAS--CHMNYGTSVVVGVPP 134 (176)
T ss_dssp EEEECSCC-----HHHHHHHHTT--SCTTTCEEEECSCCC
T ss_pred EEEEeCCc-----hHHHHHHHHH--hhcCCeEEEEEEccc
Confidence 88887776 2334444444 444457777765543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=0.00036 Score=53.21 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=67.4
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
+...+.++||-+|+|++|..++.+|+++ +.+++.++.+ +++.+.+++.-. + .++.-+-.+......+.+|.
T Consensus 26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~---Ga~~i~~~~~-~~~~~~a~~lGa---d--~~i~~~~~~~~~~~~~~~D~ 96 (168)
T d1uufa2 26 WQAGPGKKVGVVGIGGLGHMGIKLAHAM---GAHVVAFTTS-EAKREAAKALGA---D--EVVNSRNADEMAAHLKSFDF 96 (168)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHT---TCEEEEEESS-GGGHHHHHHHTC---S--EEEETTCHHHHHTTTTCEEE
T ss_pred hCCCCCCEEEEeccchHHHHHHHHhhcc---cccchhhccc-hhHHHHHhccCC---c--EEEECchhhHHHHhcCCCce
Confidence 4567789999999999999999999985 6688899999 888888876521 1 22332222222233468999
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+|-.... .. .++..... +++ ||.++.--+
T Consensus 97 vid~~g~--~~---~~~~~~~~--l~~-~G~iv~~G~ 125 (168)
T d1uufa2 97 ILNTVAA--PH---NLDDFTTL--LKR-DGTMTLVGA 125 (168)
T ss_dssp EEECCSS--CC---CHHHHHTT--EEE-EEEEEECCC
T ss_pred eeeeeec--ch---hHHHHHHH--Hhc-CCEEEEecc
Confidence 8866654 32 24555555 665 788777544
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.44 E-value=0.00041 Score=54.67 Aligned_cols=112 Identities=9% Similarity=-0.073 Sum_probs=75.4
Q ss_pred HHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcE-EEEEcchhhhhhhc--C
Q 042616 34 ALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCI-EFVKGDAQKLLMGD--Y 110 (220)
Q Consensus 34 ~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~V-e~v~gda~~~L~~~--~ 110 (220)
..+...+.+.||.+|+|++|..++.+|+++. .++|+++|.+ +++++.|+++-. +.+ .-...+..+.+.++ .
T Consensus 19 ~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~g--a~~Vi~~d~~-~~rl~~a~~~Ga---~~~~~~~~~~~~~~i~~~t~g 92 (195)
T d1kola2 19 VTAGVGPGSTVYVAGAGPVGLAAAASARLLG--AAVVIVGDLN-PARLAHAKAQGF---EIADLSLDTPLHEQIAALLGE 92 (195)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESC-HHHHHHHHHTTC---EEEETTSSSCHHHHHHHHHSS
T ss_pred HHhCCCCCCEEEEECcCHHHHHHHHHHHhhc--ccceeeeccc-chhhHhhhhccc---cEEEeCCCcCHHHHHHHHhCC
Confidence 3466778899999999988999999998764 5799999999 999999988732 111 11123333333232 3
Q ss_pred CCccEEEEcCCCCC----------ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 111 RGADFVLIDCNIDI----------DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 111 ~~~D~VfiD~~k~~----------~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
..+|.+|-....+. ..-...++.+.+. ++| ||.|+.-.+..
T Consensus 93 ~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~--~r~-gG~v~~~G~~~ 143 (195)
T d1kola2 93 PEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQV--TRV-AGKIGIPGLYV 143 (195)
T ss_dssp SCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHH--EEE-EEEEEECSCCC
T ss_pred CCcEEEEECccccccCCcccceeecCcHHHHHHHHHH--Hhc-CCEEEEeeecC
Confidence 57999884433200 0124678999988 776 88888776643
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.30 E-value=0.00045 Score=53.43 Aligned_cols=105 Identities=15% Similarity=0.081 Sum_probs=68.9
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc--hhhhhhhc-CCC
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD--AQKLLMGD-YRG 112 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd--a~~~L~~~-~~~ 112 (220)
+...+.+.||-+|+|+.|..++.+|+++. ..+|+.+|++ +++.+.|+++-. ...+.....| ........ ...
T Consensus 24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~G--a~~Vi~~d~~-~~r~~~a~~~Ga--~~~i~~~~~~~~~~~~~~~~~~~G 98 (174)
T d1e3ia2 24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAG--ASRIIAIDIN-GEKFPKAKALGA--TDCLNPRELDKPVQDVITELTAGG 98 (174)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSC-GGGHHHHHHTTC--SEEECGGGCSSCHHHHHHHHHTSC
T ss_pred hCCCCCCEEEEECCChHHHHHHHHHHHhC--Cceeeeeccc-hHHHHHHHHhCC--CcccCCccchhhhhhhHhhhhcCC
Confidence 34456799999999999999999999874 3689999999 999999998632 1111111111 12222111 467
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+|++|--... ...++.+.+. +++.+|.++.--+
T Consensus 99 ~d~vie~~G~-----~~~~~~a~~~--~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 99 VDYSLDCAGT-----AQTLKAAVDC--TVLGWGSCTVVGA 131 (174)
T ss_dssp BSEEEESSCC-----HHHHHHHHHT--BCTTTCEEEECCC
T ss_pred CcEEEEeccc-----chHHHHHHHH--hhcCCeEEEecCC
Confidence 9999744433 4567888877 7663366666443
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.28 E-value=0.00047 Score=60.37 Aligned_cols=131 Identities=9% Similarity=-0.017 Sum_probs=93.5
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCC-----------cEEEEEeCCchhHHHHHHHHh
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTG-----------GRVVCILSGVIGDIDASKKSL 88 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~-----------grV~tIE~d~~~~~~~Ar~~l 88 (220)
|+...++.+.+|+..++...+..+|+|-.|| +|.+-+.+...+.... ..++++|.+ +..+..|+.++
T Consensus 142 G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacG-sG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~-~~~~~la~~n~ 219 (425)
T d2okca1 142 GQYFTPRPLIQAMVDCINPQMGETVCDPACG-TGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNT-PLVVTLASMNL 219 (425)
T ss_dssp GGGCCCHHHHHHHHHHHCCCTTCCEEETTCT-TCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESC-HHHHHHHHHHH
T ss_pred hhhccchhhhHhhheeccCcccceeeccccc-cCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhcc-HHHHHHHHhhh
Confidence 4567888899999999998888999999987 7887777666554322 248999999 99999999887
Q ss_pred c--ccC-CcEEEEEcchhhhhhhcCCCccEEEEcCCCCC------------------ccHHHHHHHHHhhcCCCCCC--E
Q 042616 89 G--RYA-NCIEFVKGDAQKLLMGDYRGADFVLIDCNIDI------------------DGHKNVFRAAKESVMHGSGA--G 145 (220)
Q Consensus 89 ~--g~~-~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~------------------~~y~~~l~~l~~~~~L~~~G--g 145 (220)
- +.. .+..+..+|..+.-+ ...||+|+.+++-.. ..+.-++..+... |++.| +
T Consensus 220 ~l~g~~~~~~~i~~~d~l~~~~--~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~--Lk~~G~~~ 295 (425)
T d2okca1 220 YLHGIGTDRSPIVCEDSLEKEP--STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLM--LKTGGRAA 295 (425)
T ss_dssp HHTTCCSSCCSEEECCTTTSCC--SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHH--EEEEEEEE
T ss_pred hhcCCccccceeecCchhhhhc--ccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHh--cCCCCeEE
Confidence 5 542 456788888776432 468999998876511 1234477788887 87644 2
Q ss_pred EEEEecCCCCC
Q 042616 146 VIVGYNALPKG 156 (220)
Q Consensus 146 viv~dNv~~~g 156 (220)
+|+-+.+++.+
T Consensus 296 iI~p~~~L~~~ 306 (425)
T d2okca1 296 VVLPDNVLFEA 306 (425)
T ss_dssp EEEEHHHHHCS
T ss_pred EEechHHhhhh
Confidence 23334566544
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.00024 Score=54.48 Aligned_cols=100 Identities=5% Similarity=-0.010 Sum_probs=66.3
Q ss_pred hhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCc
Q 042616 37 AGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGA 113 (220)
Q Consensus 37 ~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~ 113 (220)
...+.++||-.|+ |++|..++.+|+++ +.+|++++.+ +++.+.+++. |...-+.....|..+.+... ...+
T Consensus 25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~---G~~vi~~~~~-~~~~~~~~~~--Ga~~vi~~~~~~~~~~i~~~t~~~g~ 98 (174)
T d1yb5a2 25 CVKAGESVLVHGASGGVGLAACQIARAY---GLKILGTAGT-EEGQKIVLQN--GAHEVFNHREVNYIDKIKKYVGEKGI 98 (174)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHT---TCEEEEEESS-HHHHHHHHHT--TCSEEEETTSTTHHHHHHHHHCTTCE
T ss_pred CCCCCCEEEEEecccccccccccccccc---Cccccccccc-cccccccccc--CcccccccccccHHHHhhhhhccCCc
Confidence 3456789999994 78999999999875 6799999999 8888888764 32111222223444433222 3568
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
|+|| |+.- ...++.+.+. ++| ||.+|.-.
T Consensus 99 d~v~-d~~g-----~~~~~~~~~~--l~~-~G~iv~~G 127 (174)
T d1yb5a2 99 DIII-EMLA-----NVNLSKDLSL--LSH-GGRVIVVG 127 (174)
T ss_dssp EEEE-ESCH-----HHHHHHHHHH--EEE-EEEEEECC
T ss_pred eEEe-eccc-----HHHHHHHHhc--cCC-CCEEEEEe
Confidence 9765 5543 2467777777 776 78777754
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.25 E-value=0.00075 Score=51.51 Aligned_cols=98 Identities=7% Similarity=0.003 Sum_probs=67.9
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc---chhhhhhhc-CCCc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG---DAQKLLMGD-YRGA 113 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g---da~~~L~~~-~~~~ 113 (220)
..+.+.||-+|+|+.|..++.++++.. ..+|+.+|.+ +++++.+++... .+++.. +..+.+... ...+
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g--~~~vv~~~~~-~~k~~~~~~~ga-----~~~i~~~~~~~~~~~~~~~~~g~ 101 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMT--PATVIALDVK-EEKLKLAERLGA-----DHVVDARRDPVKQVMELTRGRGV 101 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHC--CCEEEEEESS-HHHHHHHHHTTC-----SEEEETTSCHHHHHHHHTTTCCE
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhc--Ccccccccch-hHHHHHHhhccc-----ceeecCcccHHHHHHHhhCCCCc
Confidence 355689999999999999999998764 3688999999 999999987642 122222 223333322 3469
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
|.+|-.... ...++..... +++ ||.++.--
T Consensus 102 d~vid~~g~-----~~~~~~a~~~--l~~-~G~iv~~G 131 (172)
T d1h2ba2 102 NVAMDFVGS-----QATVDYTPYL--LGR-MGRLIIVG 131 (172)
T ss_dssp EEEEESSCC-----HHHHHHGGGG--EEE-EEEEEECC
T ss_pred eEEEEecCc-----chHHHHHHHH--HhC-CCEEEEEe
Confidence 988765554 3457888887 765 88777644
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.18 E-value=0.00049 Score=58.47 Aligned_cols=80 Identities=8% Similarity=-0.070 Sum_probs=61.1
Q ss_pred CCC-CCChhHHHHHHHHHhhC------CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccC
Q 042616 20 GKR-GKEPDVGEFISALAAGN------NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYA 92 (220)
Q Consensus 20 ~~~-~~~p~~~~~L~~La~~~------~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~ 92 (220)
||. .+.+..++-+...+... ....|||||.| .|..|..|..+.. ..+|++||.| +...+.-++.+.+
T Consensus 16 GQnfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG-~G~LT~~Ll~~~~--~~~v~~iE~D-~~~~~~L~~~~~~-- 89 (322)
T d1i4wa_ 16 GFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPG-VGIQSAIFYNKYC--PRQYSLLEKR-SSLYKFLNAKFEG-- 89 (322)
T ss_dssp GCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCT-TCHHHHHHHHHHC--CSEEEEECCC-HHHHHHHHHHTTT--
T ss_pred cccccCCHHHHHHHHHHhcCCccccccCCCeEEEECCC-CCHHHHHHHhcCC--CCEEEEEECC-HHHHHHHHHhccC--
Confidence 444 56787777766665543 45679999997 9999999987643 2599999999 8888887776653
Q ss_pred CcEEEEEcchhhh
Q 042616 93 NCIEFVKGDAQKL 105 (220)
Q Consensus 93 ~~Ve~v~gda~~~ 105 (220)
++++++++|+..+
T Consensus 90 ~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 90 SPLQILKRDPYDW 102 (322)
T ss_dssp SSCEEECSCTTCH
T ss_pred CCcEEEeCchhhc
Confidence 6799999998653
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.16 E-value=0.00086 Score=50.91 Aligned_cols=102 Identities=19% Similarity=0.120 Sum_probs=65.6
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE--cchhhhhhhc-CCC
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK--GDAQKLLMGD-YRG 112 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~--gda~~~L~~~-~~~ 112 (220)
+...+.+.||-.|+|+.|.+++.+|+++. ..+|++++.+ +++.+.++++=. ...|.... .+..+.+... ...
T Consensus 24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G--~~~vi~~~~~-~~k~~~ak~lGa--~~~i~~~~~~~~~~~~~~~~~~~g 98 (176)
T d2fzwa2 24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAG--ASRIIGVDIN-KDKFARAKEFGA--TECINPQDFSKPIQEVLIEMTDGG 98 (176)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECSC-GGGHHHHHHHTC--SEEECGGGCSSCHHHHHHHHTTSC
T ss_pred hCCCCCCEEEEecchhHHHHHHHHHHHHh--cCceEEEccc-HHHHHHHHHhCC--cEEEeCCchhhHHHHHHHHHcCCC
Confidence 44567899999999889999999999874 3789999999 999999987532 11111111 2233333222 367
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|+||--... ...++.+... +++.|.++++
T Consensus 99 ~D~vid~~G~-----~~~~~~~~~~--~~~g~~~~~v 128 (176)
T d2fzwa2 99 VDYSFECIGN-----VKVMRAALEA--CHKGWGVSVV 128 (176)
T ss_dssp BSEEEECSCC-----HHHHHHHHHT--BCTTTCEEEE
T ss_pred CcEeeecCCC-----HHHHHHHHHh--hcCCceeEEE
Confidence 9988865544 3455666666 5543344433
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=97.16 E-value=0.0013 Score=50.23 Aligned_cols=100 Identities=16% Similarity=0.048 Sum_probs=65.3
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE-c---c-hhhhhhhc-
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK-G---D-AQKLLMGD- 109 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~-g---d-a~~~L~~~- 109 (220)
++..+.+.||-+|+|+.|.+++.++.+.. +.+|++++.+ +++.+.++++-. .+++. . + ..+.+...
T Consensus 24 ~~vk~GdtVlV~GaGG~G~~~~~~~~~~g--~~~Vi~~~~~-~~k~~~a~~~Ga-----~~~i~~~~~~~~~~~~~~~~~ 95 (176)
T d2jhfa2 24 AKVTQGSTCAVFGLGGVGLSVIMGCKAAG--AARIIGVDIN-KDKFAKAKEVGA-----TECVNPQDYKKPIQEVLTEMS 95 (176)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSC-GGGHHHHHHTTC-----SEEECGGGCSSCHHHHHHHHT
T ss_pred hCCCCCCEEEEECCCCcHHHHHHHHHHcC--CceEEeecCc-HHHHHHHHHhCC-----eeEEecCCchhHHHHHHHHHh
Confidence 34566789999999888988888887753 4799999999 999999988743 11111 1 1 22222222
Q ss_pred CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 110 YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 110 ~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+.+|++|-.... ...++.+... +++.|++++.-
T Consensus 96 ~~G~D~vid~~G~-----~~~~~~a~~~--~~~~~g~~~~~ 129 (176)
T d2jhfa2 96 NGGVDFSFEVIGR-----LDTMVTALSC--CQEAYGVSVIV 129 (176)
T ss_dssp TSCBSEEEECSCC-----HHHHHHHHHH--BCTTTCEEEEC
T ss_pred cCCCCEEEecCCc-----hhHHHHHHHH--HhcCCcceEEe
Confidence 3679987765554 3445555555 55545666654
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.14 E-value=0.0011 Score=50.25 Aligned_cols=101 Identities=11% Similarity=0.104 Sum_probs=67.4
Q ss_pred hhCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc---chhhhhhhc--C
Q 042616 37 AGNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG---DAQKLLMGD--Y 110 (220)
Q Consensus 37 ~~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g---da~~~L~~~--~ 110 (220)
...+.++||-+| +|+.|..++.++.+.. ..+|+.++.+ +++.+.++++- . + .++.. |..+.+.+. .
T Consensus 24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g--~~~V~~~~~~-~~~~~~~~~~G--a-~--~~i~~~~~~~~~~~~~~~~~ 95 (170)
T d1jvba2 24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVS--GATIIGVDVR-EEAVEAAKRAG--A-D--YVINASMQDPLAEIRRITES 95 (170)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHT--CCEEEEEESS-HHHHHHHHHHT--C-S--EEEETTTSCHHHHHHHHTTT
T ss_pred CCCCCCEEEEEeccccceeeeeecccccc--cccccccccc-hhhHHHHHHcC--C-c--eeeccCCcCHHHHHHHHhhc
Confidence 456678999999 4778988888888753 3699999999 99999998752 1 1 22222 332322222 3
Q ss_pred CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 111 RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 111 ~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
..+|++|--... ...++.+... ++| ||.++.-...
T Consensus 96 ~~~d~vid~~g~-----~~~~~~a~~~--l~~-~G~iv~~G~~ 130 (170)
T d1jvba2 96 KGVDAVIDLNNS-----EKTLSVYPKA--LAK-QGKYVMVGLF 130 (170)
T ss_dssp SCEEEEEESCCC-----HHHHTTGGGG--EEE-EEEEEECCSS
T ss_pred ccchhhhccccc-----chHHHhhhhh--ccc-CCEEEEeccc
Confidence 568966643333 4566777777 776 8888876544
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.0025 Score=49.64 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=68.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh------hc-CC
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM------GD-YR 111 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~------~~-~~ 111 (220)
.+..+|||+|++ .|.++-.++.-... .++++++|.. +- +.. +.+.+++||..+... .. ..
T Consensus 21 k~~~~vlDLg~a-PGgw~q~~~~~~~~-~~~v~~vDl~-~~---------~~i-~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T d1ej0a_ 21 KPGMTVVDLGAA-PGGWSQYVVTQIGG-KGRIIACDLL-PM---------DPI-VGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp CTTCEEEEESCT-TCHHHHHHHHHHCT-TCEEEEEESS-CC---------CCC-TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred CCCCeEEEEecc-CCcceEEEEeeccc-cceEEEeecc-cc---------ccc-CCceEeecccccchhhhhhhhhccCc
Confidence 467899999985 99999988887665 7999999998 52 223 568899998754221 11 36
Q ss_pred CccEEEEcCCCCC------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 112 GADFVLIDCNIDI------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 112 ~~D~VfiD~~k~~------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++|+|+-|...+. ......+..+.+. |++ ||.+|+.
T Consensus 88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~--Lk~-gG~fV~K 135 (180)
T d1ej0a_ 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDV--LAP-GGSFVVK 135 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhc--cCC-CCcEEEE
Confidence 7999999987622 1123445556666 765 9999998
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=96.84 E-value=0.0025 Score=48.25 Aligned_cols=103 Identities=17% Similarity=0.066 Sum_probs=63.8
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc--hhhhhhhc-CCC
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD--AQKLLMGD-YRG 112 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd--a~~~L~~~-~~~ 112 (220)
+...+.+.||-+|+|+.|.+++.++.++. +.+|+++|.+ +++++.|++.=. ...|.....+ ..+..... ...
T Consensus 24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g--~~~Vi~~~~~-~~rl~~a~~~GA--d~~in~~~~~~~~~~~~~~~~~~G 98 (175)
T d1cdoa2 24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAG--AKRIIAVDLN-PDKFEKAKVFGA--TDFVNPNDHSEPISQVLSKMTNGG 98 (175)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSC-GGGHHHHHHTTC--CEEECGGGCSSCHHHHHHHHHTSC
T ss_pred hCCCCCCEEEEEecCCccchHHHHHHHHh--hchheeecch-HHHHHHHHHcCC--cEEEcCCCcchhHHHHHHhhccCC
Confidence 34566789999999878888887777643 5789999999 999999888521 1111111111 12222111 467
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+|++|-.... ...++.+... +++.|+++++-
T Consensus 99 ~d~vid~~G~-----~~~~~~a~~~--~~~g~~~~~~~ 129 (175)
T d1cdoa2 99 VDFSLECVGN-----VGVMRNALES--CLKGWGVSVLV 129 (175)
T ss_dssp BSEEEECSCC-----HHHHHHHHHT--BCTTTCEEEEC
T ss_pred cceeeeecCC-----HHHHHHHHHH--hhCCCcceeEE
Confidence 9999866654 3345555554 44545666654
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.74 E-value=0.0063 Score=45.65 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=64.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCC--CcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQT--GGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~--~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
++|+-||+|..|.| ||.++.+. ..+|+.+|++ ++.++.|++.- .+.....+..+.. ....|+|++-
T Consensus 2 k~I~IIG~G~mG~s---la~~L~~~g~~~~I~~~D~~-~~~~~~a~~~~-----~~~~~~~~~~~~~---~~~~dlIila 69 (171)
T d2g5ca2 2 QNVLIVGVGFMGGS---FAKSLRRSGFKGKIYGYDIN-PESISKAVDLG-----IIDEGTTSIAKVE---DFSPDFVMLS 69 (171)
T ss_dssp CEEEEESCSHHHHH---HHHHHHHTTCCSEEEEECSC-HHHHHHHHHTT-----SCSEEESCGGGGG---GTCCSEEEEC
T ss_pred CEEEEEccCHHHHH---HHHHHHhcCCCeEEEEEECC-hHHHHHHHHhh-----cchhhhhhhhhhh---cccccccccc
Confidence 46888998765653 33333321 3589999999 99888888752 2222222322221 2468999999
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
.+. ..+.++++.+.+. +. .+.++.|....++
T Consensus 70 ~p~--~~~~~vl~~l~~~--~~--~~~ii~d~~s~k~ 100 (171)
T d2g5ca2 70 SPV--RTFREIAKKLSYI--LS--EDATVTDQGSVKG 100 (171)
T ss_dssp SCH--HHHHHHHHHHHHH--SC--TTCEEEECCSCCT
T ss_pred CCc--hhhhhhhhhhhcc--cc--ccccccccccccH
Confidence 998 8899999999998 64 3466677555555
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.70 E-value=0.0017 Score=49.43 Aligned_cols=98 Identities=8% Similarity=0.053 Sum_probs=64.1
Q ss_pred hCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 38 GNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 38 ~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
..+.++||-.| +|++|..++.||... +.+++++..+ ++..+.++++ |...-+.....|..+.+.+. ...+|
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~---g~~vi~~~~~-~~~~~~l~~~--Ga~~vi~~~~~~~~~~v~~~t~~~g~d 96 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMI---GARIYTTAGS-DAKREMLSRL--GVEYVGDSRSVDFADEILELTDGYGVD 96 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH---TCEEEEEESS-HHHHHHHHTT--CCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CCCCCEEEEECCCCCcccccchhhccc---cccceeeecc-cccccccccc--cccccccCCccCHHHHHHHHhCCCCEE
Confidence 34568899877 478999999999875 6799998888 8888877764 32111222223443433333 35799
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+| |+.- . +.++.+.+. |++ +|.+|.-
T Consensus 97 ~v~-d~~g--~---~~~~~~~~~--l~~-~G~~v~~ 123 (183)
T d1pqwa_ 97 VVL-NSLA--G---EAIQRGVQI--LAP-GGRFIEL 123 (183)
T ss_dssp EEE-ECCC--T---HHHHHHHHT--EEE-EEEEEEC
T ss_pred EEE-eccc--c---hHHHHHHHH--hcC-CCEEEEE
Confidence 988 4443 2 456777777 776 7877774
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.006 Score=54.58 Aligned_cols=132 Identities=11% Similarity=-0.007 Sum_probs=88.5
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCC----------------cEEEEEeCCchhHHHH
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTG----------------GRVVCILSGVIGDIDA 83 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~----------------grV~tIE~d~~~~~~~ 83 (220)
|+...++.+.+++..++...+..+|+|-.|| +|.+-+.....+.... ..++++|.+ +..+..
T Consensus 144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacG-sG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~-~~~~~l 221 (524)
T d2ar0a1 144 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAG-TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV-PGTRRL 221 (524)
T ss_dssp -CCCCCHHHHHHHHHHHCCCTTCCEEETTCT-TTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESC-HHHHHH
T ss_pred chhccccchhHhhhhcccCccchhhcchhhh-cchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccC-HHHHHH
Confidence 5677888899999999998888899999987 7777665555443321 258999999 999999
Q ss_pred HHHHhc--ccCC----cEEEEEcchhhhhhhcCCCccEEEEcCCCCC---------------ccHHHHHHHHHhhcCCCC
Q 042616 84 SKKSLG--RYAN----CIEFVKGDAQKLLMGDYRGADFVLIDCNIDI---------------DGHKNVFRAAKESVMHGS 142 (220)
Q Consensus 84 Ar~~l~--g~~~----~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~---------------~~y~~~l~~l~~~~~L~~ 142 (220)
|+-|+- +... .-.+..++....-......||+|+-+++-.. ..+.-++..+... |++
T Consensus 222 a~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~--Lk~ 299 (524)
T d2ar0a1 222 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIET--LHP 299 (524)
T ss_dssp HHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHH--EEE
T ss_pred HHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHh--ccc
Confidence 998774 4322 1245556654322122467999998876511 1123367777777 776
Q ss_pred CCE---EEEEecCCCCC
Q 042616 143 GAG---VIVGYNALPKG 156 (220)
Q Consensus 143 ~Gg---viv~dNv~~~g 156 (220)
|| +|+-+++++.+
T Consensus 300 -gGr~aiIlP~~~Lf~~ 315 (524)
T d2ar0a1 300 -GGRAAVVVPDNVLFEG 315 (524)
T ss_dssp -EEEEEEEEEHHHHHCC
T ss_pred -cCcEEEEEehHHhhhh
Confidence 54 34456777654
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.0025 Score=48.39 Aligned_cols=104 Identities=9% Similarity=0.065 Sum_probs=66.3
Q ss_pred HhhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCC
Q 042616 36 AAGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRG 112 (220)
Q Consensus 36 a~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~ 112 (220)
++..+.+.||-.|. |++|..++.||++. +.+|++++.+ ++..+.+++. |...-|.....|..+-+.++ ...
T Consensus 24 ~~l~~g~~Vlv~ga~g~vG~~~iqlak~~---Ga~Vi~~~~s-~~k~~~~~~l--Ga~~vi~~~~~d~~~~v~~~t~g~g 97 (179)
T d1qora2 24 YEIKPDEQFLFHAAAGGVGLIACQWAKAL---GAKLIGTVGT-AQKAQSALKA--GAWQVINYREEDLVERLKEITGGKK 97 (179)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHH---TCEEEEEESS-HHHHHHHHHH--TCSEEEETTTSCHHHHHHHHTTTCC
T ss_pred hCCCCCCEEEEEccccccchHHHHHHHHh---CCeEeecccc-hHHHHHHHhc--CCeEEEECCCCCHHHHHHHHhCCCC
Confidence 34456789998865 44888888899874 7899999999 8888888765 32112222234444444333 356
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+|+ ++|+.- .. .+..+... +++ +|.++......
T Consensus 98 ~d~-v~d~~g--~~---~~~~~~~~--l~~-~G~~v~~g~~~ 130 (179)
T d1qora2 98 VRV-VYDSVG--RD---TWERSLDC--LQR-RGLMVSFGNSS 130 (179)
T ss_dssp EEE-EEECSC--GG---GHHHHHHT--EEE-EEEEEECCCTT
T ss_pred eEE-EEeCcc--HH---HHHHHHHH--Hhc-CCeeeeccccc
Confidence 885 667665 43 34566666 665 77666654443
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.58 E-value=0.0068 Score=46.05 Aligned_cols=98 Identities=13% Similarity=0.111 Sum_probs=63.4
Q ss_pred HhhCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 36 AAGNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 36 a~~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
+...+.++||-.| +|++|..++.+|++. +.+|++++.+ +++.+.+++. |. +.+ +-..+..+.+.. ...+|
T Consensus 23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~---G~~vi~~~~~-~~~~~~~~~l--Ga-~~~-i~~~~~~~~~~~-~~g~D 93 (171)
T d1iz0a2 23 AQARPGEKVLVQAAAGALGTAAVQVARAM---GLRVLAAASR-PEKLALPLAL--GA-EEA-ATYAEVPERAKA-WGGLD 93 (171)
T ss_dssp TTCCTTCEEEESSTTBHHHHHHHHHHHHT---TCEEEEEESS-GGGSHHHHHT--TC-SEE-EEGGGHHHHHHH-TTSEE
T ss_pred hCCCCCCEEEEEeccccchhhhhhhhccc---cccccccccc-cccccccccc--cc-cee-eehhhhhhhhhc-ccccc
Confidence 4456778899888 477899999999875 6799999999 8888888764 22 221 111222222322 46799
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+|| |+.- .. ++..... |+| ||.++....
T Consensus 94 ~v~-d~~G--~~----~~~~~~~--l~~-~G~~v~~G~ 121 (171)
T d1iz0a2 94 LVL-EVRG--KE----VEESLGL--LAH-GGRLVYIGA 121 (171)
T ss_dssp EEE-ECSC--TT----HHHHHTT--EEE-EEEEEEC--
T ss_pred ccc-cccc--hh----HHHHHHH--Hhc-CCcEEEEeC
Confidence 875 6643 22 4566666 766 787776543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.51 E-value=0.0056 Score=47.36 Aligned_cols=108 Identities=12% Similarity=0.125 Sum_probs=70.7
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
.-+|.+|+-||+|-+|..++..|..+ ++.|+.+|.+ ++.++..+..+. .+++....+...+- +.....|+|+
T Consensus 29 gv~pa~V~ViGaGvaG~~A~~~A~~l---GA~V~~~D~~-~~~l~~l~~~~~---~~~~~~~~~~~~l~-~~~~~aDivI 100 (168)
T d1pjca1 29 GVKPGKVVILGGGVVGTEAAKMAVGL---GAQVQIFDIN-VERLSYLETLFG---SRVELLYSNSAEIE-TAVAEADLLI 100 (168)
T ss_dssp TBCCCEEEEECCSHHHHHHHHHHHHT---TCEEEEEESC-HHHHHHHHHHHG---GGSEEEECCHHHHH-HHHHTCSEEE
T ss_pred CCCCcEEEEECCChHHHHHHHHHhhC---CCEEEEEeCc-HHHHHHHHHhhc---ccceeehhhhhhHH-HhhccCcEEE
Confidence 45789999999998999999888876 7899999999 888877766654 35777777665543 3234689987
Q ss_pred EcCCCCCccHHHH-HHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 118 IDCNIDIDGHKNV-FRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 118 iD~~k~~~~y~~~-l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
--.-.....-+.+ -+...+. .+ +|+|||=-.+-+.|
T Consensus 101 ~aalipG~~aP~lIt~~mv~~--Mk-~GSVIVDvaidqGG 137 (168)
T d1pjca1 101 GAVLVPGRRAPILVPASLVEQ--MR-TGSVIVDVAVDQGG 137 (168)
T ss_dssp ECCCCTTSSCCCCBCHHHHTT--SC-TTCEEEETTCTTCC
T ss_pred EeeecCCcccCeeecHHHHhh--cC-CCcEEEEeecCCCC
Confidence 4432211111111 2333333 44 48887765554544
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=96.11 E-value=0.0063 Score=46.90 Aligned_cols=106 Identities=9% Similarity=0.097 Sum_probs=62.0
Q ss_pred HhhCCCCEEEEE--cCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh---hh-
Q 042616 36 AAGNNAQLIVMA--CSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL---LM- 107 (220)
Q Consensus 36 a~~~~a~~ILEI--Gtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~---L~- 107 (220)
+...+.+.+|-+ |+|++|..++.||+++ +.+|+++-.. ++..+...+.++ |....|..-..+..+. +.
T Consensus 24 ~~~~~g~~vli~~ga~g~vG~~aiqlAk~~---Ga~vI~~v~~-~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~ 99 (189)
T d1gu7a2 24 VKLTPGKDWFIQNGGTSAVGKYASQIGKLL---NFNSISVIRD-RPNLDEVVASLKELGATQVITEDQNNSREFGPTIKE 99 (189)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHH---TCEEEEEECC-CTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHH
T ss_pred hCCCCCCEEEEEeCCCchHHHHHHHHHhhc---CCeEEEEEec-ccccchHHhhhhhccccEEEeccccchhHHHHHHHH
Confidence 334455677776 5577899999999986 6799887666 555554444444 4322121111121121 11
Q ss_pred ---hcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 108 ---GDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 108 ---~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
....++|++| |+-- .+.++.+.+. |++ ||.+|......
T Consensus 100 ~~~~~g~~vdvv~-D~vg-----~~~~~~~~~~--l~~-~G~~v~~G~~~ 140 (189)
T d1gu7a2 100 WIKQSGGEAKLAL-NCVG-----GKSSTGIARK--LNN-NGLMLTYGGMS 140 (189)
T ss_dssp HHHHHTCCEEEEE-ESSC-----HHHHHHHHHT--SCT-TCEEEECCCCS
T ss_pred HHhhccCCceEEE-ECCC-----cchhhhhhhh--hcC-CcEEEEECCcc
Confidence 1135688887 6643 3445667777 765 88888765543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.93 E-value=0.013 Score=44.69 Aligned_cols=105 Identities=12% Similarity=0.072 Sum_probs=66.8
Q ss_pred HHHHhhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh-hhhhhc-
Q 042616 33 SALAAGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ-KLLMGD- 109 (220)
Q Consensus 33 ~~La~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~-~~L~~~- 109 (220)
...++..+.+.||-.|+ |++|..++.||+.. +.+|+++..+ ++..+.+++.- ....|.....+.. ..+...
T Consensus 22 ~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~---Ga~vi~~~~~-~~~~~~~~~~G--a~~vi~~~~~~~~~~~~~~~~ 95 (182)
T d1v3va2 22 LEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK---GCKVVGAAGS-DEKIAYLKQIG--FDAAFNYKTVNSLEEALKKAS 95 (182)
T ss_dssp HTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT---TCEEEEEESS-HHHHHHHHHTT--CSEEEETTSCSCHHHHHHHHC
T ss_pred HHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc---CCEEEEeCCC-HHHHHHHHhhh--hhhhcccccccHHHHHHHHhh
Confidence 33445567799998886 55888888888864 7899999999 88888877753 2111111112222 222222
Q ss_pred CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 110 YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 110 ~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
...+|+|| |+-- .+.++.+... |++ ||.++....
T Consensus 96 ~~Gvd~v~-D~vG-----~~~~~~~~~~--l~~-~G~~v~~G~ 129 (182)
T d1v3va2 96 PDGYDCYF-DNVG-----GEFLNTVLSQ--MKD-FGKIAICGA 129 (182)
T ss_dssp TTCEEEEE-ESSC-----HHHHHHHGGG--EEE-EEEEEECCC
T ss_pred cCCCceeE-EecC-----chhhhhhhhh--ccC-CCeEEeecc
Confidence 35799966 5543 3567888888 776 777776543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.92 E-value=0.018 Score=43.05 Aligned_cols=96 Identities=14% Similarity=0.056 Sum_probs=64.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc------ccC--CcEEEEEcchhhhhhhcCCCc
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG------RYA--NCIEFVKGDAQKLLMGDYRGA 113 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~------g~~--~~Ve~v~gda~~~L~~~~~~~ 113 (220)
++|--||+|..|. .+|..+...|-.|+.++.+ ++.++..++.-. +.. .....+..|..+.+ ...
T Consensus 2 k~iaIiGaG~~G~---~~A~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----~~a 73 (184)
T d1bg6a2 2 KTYAVLGLGNGGH---AFAAYLALKGQSVLAWDID-AQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----KDA 73 (184)
T ss_dssp CEEEEECCSHHHH---HHHHHHHHTTCEEEEECSC-HHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----TTC
T ss_pred CEEEEECccHHHH---HHHHHHHHCCCEEEEEECC-HHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh----cCC
Confidence 6787889765444 3333333336789999999 998888776532 110 11223345556655 468
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+||+-.+. .....+++.+.++ +.+ +.+|+.-
T Consensus 74 D~iii~v~~--~~~~~~~~~i~~~--l~~-~~~iv~~ 105 (184)
T d1bg6a2 74 DVILIVVPA--IHHASIAANIASY--ISE-GQLIILN 105 (184)
T ss_dssp SEEEECSCG--GGHHHHHHHHGGG--CCT-TCEEEES
T ss_pred CEEEEEEch--hHHHHHHHHhhhc--cCC-CCEEEEe
Confidence 999997776 7789999999998 864 7776653
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.73 E-value=0.0067 Score=46.83 Aligned_cols=98 Identities=7% Similarity=-0.057 Sum_probs=61.2
Q ss_pred CCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEE
Q 042616 40 NAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVL 117 (220)
Q Consensus 40 ~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~Vf 117 (220)
+.+.||-.| +|++|..++.||+++ +.+|++.-.+ ++..+.+++.-. ...|. ...+..+..... .+.+|.||
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~---Ga~Viat~~s-~~k~~~~~~lGa--~~vi~-~~~~~~~~~~~~~~~gvD~vi 103 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKR---GYTVEASTGK-AAEHDYLRVLGA--KEVLA-REDVMAERIRPLDKQRWAAAV 103 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHT---TCCEEEEESC-TTCHHHHHHTTC--SEEEE-CC---------CCSCCEEEEE
T ss_pred CCCEEEEEeccchHHHHHHHHHHHc---CCceEEecCc-hHHHHHHHhccc--ceeee-cchhHHHHHHHhhccCcCEEE
Confidence 357799887 478999999999885 7899999999 888988887532 11121 111222222222 46899655
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|.-- +. .++...+. |++ ||.++.-...
T Consensus 104 -d~vg--g~---~~~~~l~~--l~~-~Griv~~G~~ 130 (176)
T d1xa0a2 104 -DPVG--GR---TLATVLSR--MRY-GGAVAVSGLT 130 (176)
T ss_dssp -ECST--TT---THHHHHHT--EEE-EEEEEECSCC
T ss_pred -EcCC--ch---hHHHHHHH--hCC-CceEEEeecc
Confidence 5544 33 35666676 766 8888776554
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.66 E-value=0.054 Score=38.85 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=49.1
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh--hhhhhc-CCCccEEEEc
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ--KLLMGD-YRGADFVLID 119 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~--~~L~~~-~~~~D~VfiD 119 (220)
+|+-+|. |..+..+++.+...+-.|+.||.| ++.++.++..+ .+.+++||+. ++|... ....|.++.=
T Consensus 2 ~IvI~G~---G~~G~~la~~L~~~g~~v~vid~d-~~~~~~~~~~~-----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 2 YIIIAGI---GRVGYTLAKSLSEKGHDIVLIDID-KDICKKASAEI-----DALVINGDCTKIKTLEDAGIEDADMYIAV 72 (132)
T ss_dssp EEEEECC---SHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHC-----SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred EEEEECC---CHHHHHHHHHHHHCCCCcceecCC-hhhhhhhhhhh-----hhhhccCcccchhhhhhcChhhhhhhccc
Confidence 5787885 455556666665546789999999 99888776543 3678999985 455444 3678987764
Q ss_pred CCC
Q 042616 120 CNI 122 (220)
Q Consensus 120 ~~k 122 (220)
.+.
T Consensus 73 t~~ 75 (132)
T d1lssa_ 73 TGK 75 (132)
T ss_dssp CSC
T ss_pred CCc
Confidence 443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.60 E-value=0.021 Score=42.59 Aligned_cols=88 Identities=10% Similarity=0.111 Sum_probs=58.0
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
+|.-||+|..|. .||.++.+.+-+|+.+|++ ++.++.|++. +. +.....+ .+.+ ...|+||+-.+.
T Consensus 2 kI~iIG~G~mG~---~lA~~l~~~g~~V~~~d~~-~~~~~~a~~~--~~---~~~~~~~-~~~~----~~~DiIilavp~ 67 (165)
T d2f1ka2 2 KIGVVGLGLIGA---SLAGDLRRRGHYLIGVSRQ-QSTCEKAVER--QL---VDEAGQD-LSLL----QTAKIIFLCTPI 67 (165)
T ss_dssp EEEEECCSHHHH---HHHHHHHHTTCEEEEECSC-HHHHHHHHHT--TS---CSEEESC-GGGG----TTCSEEEECSCH
T ss_pred EEEEEeecHHHH---HHHHHHHHCCCEEEEEECC-chHHHHHHHh--hc---cceeeee-cccc----cccccccccCcH
Confidence 577789765554 3444444447789999999 8888877664 21 1111222 2222 568999998877
Q ss_pred CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 123 DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 123 ~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
....++++.+.+. +.+ +.+| .|
T Consensus 68 --~~~~~vl~~l~~~--l~~-~~iv-~~ 89 (165)
T d2f1ka2 68 --QLILPTLEKLIPH--LSP-TAIV-TD 89 (165)
T ss_dssp --HHHHHHHHHHGGG--SCT-TCEE-EE
T ss_pred --hhhhhhhhhhhhh--ccc-ccce-ee
Confidence 7889999999998 643 5544 54
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.07 E-value=0.022 Score=43.61 Aligned_cols=106 Identities=13% Similarity=0.065 Sum_probs=64.7
Q ss_pred HHHhhCCC--CEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-
Q 042616 34 ALAAGNNA--QLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD- 109 (220)
Q Consensus 34 ~La~~~~a--~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~- 109 (220)
..++..+. +.||-.| +|++|..++.||+.+. ..+|+++... ++......+.+ +...-+.....+..+.+...
T Consensus 22 ~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~G--a~~vi~~~~~-~e~~~~l~~~~-gad~vi~~~~~~~~~~~~~~~ 97 (187)
T d1vj1a2 22 EKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLG--CSRVVGICGT-QEKCLFLTSEL-GFDAAVNYKTGNVAEQLREAC 97 (187)
T ss_dssp HHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTT--CSEEEEEESS-HHHHHHHHHHS-CCSEEEETTSSCHHHHHHHHC
T ss_pred HHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcC--Ccceecccch-HHHHhhhhhcc-cceEEeeccchhHHHHHHHHh
Confidence 33344444 7799877 5889999999999863 2467777776 55444333333 22122344444555555443
Q ss_pred CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 110 YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 110 ~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
...+|+|| |+-- .+.++...+. |++ ||.++....
T Consensus 98 ~~GvDvv~-D~vG-----g~~~~~~~~~--l~~-~G~iv~~G~ 131 (187)
T d1vj1a2 98 PGGVDVYF-DNVG-----GDISNTVISQ--MNE-NSHIILCGQ 131 (187)
T ss_dssp TTCEEEEE-ESSC-----HHHHHHHHTT--EEE-EEEEEEC--
T ss_pred ccCceEEE-ecCC-----chhHHHHhhh--ccc-cccEEEecc
Confidence 45699986 6654 3567788887 775 888877644
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=95.03 E-value=0.017 Score=44.03 Aligned_cols=96 Identities=8% Similarity=-0.053 Sum_probs=62.6
Q ss_pred CCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc-h-hhhhhhc-CCCccEE
Q 042616 41 AQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD-A-QKLLMGD-YRGADFV 116 (220)
Q Consensus 41 a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd-a-~~~L~~~-~~~~D~V 116 (220)
.+.||--| +|++|..++.||+++ +.+|+++..+ ++..+.+++.- . +.+ +.-+ . .+.+... .+.+|.|
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~---Ga~Viat~~s-~~k~~~~~~lG--a-d~v--i~~~~~~~~~~~~~~~~gvd~v 94 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKR---GYDVVASTGN-REAADYLKQLG--A-SEV--ISREDVYDGTLKALSKQQWQGA 94 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHH---TCCEEEEESS-SSTHHHHHHHT--C-SEE--EEHHHHCSSCCCSSCCCCEEEE
T ss_pred CCEEEEeCCcchHHHHHHHHHHHc---CCceEEEecC-HHHHHHHHhhc--c-cce--EeccchhchhhhcccCCCceEE
Confidence 44688777 588999999999986 7899999999 88888877653 2 222 2211 1 1111111 3579987
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
| |+-- .+.+..+.+. |++ ||.+|......
T Consensus 95 i-d~vg-----g~~~~~~~~~--l~~-~G~iv~~G~~~ 123 (167)
T d1tt7a2 95 V-DPVG-----GKQLASLLSK--IQY-GGSVAVSGLTG 123 (167)
T ss_dssp E-ESCC-----THHHHHHHTT--EEE-EEEEEECCCSS
T ss_pred E-ecCc-----HHHHHHHHHH--hcc-CceEEEeeccC
Confidence 6 4433 2456777777 765 88888876554
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.62 E-value=0.046 Score=42.50 Aligned_cols=50 Identities=12% Similarity=0.047 Sum_probs=42.7
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG 89 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~ 89 (220)
+-.-+|.+||-||.|-.|..++..|..+ |++|+.+|.+ ++..+..+....
T Consensus 24 ~g~V~pa~VvViGaGvaG~~Aa~~A~~l---GA~V~v~D~~-~~~~~~l~~l~~ 73 (183)
T d1l7da1 24 AGTVPPARVLVFGVGVAGLQAIATAKRL---GAVVMATDVR-AATKEQVESLGG 73 (183)
T ss_dssp TEEECCCEEEEECCSHHHHHHHHHHHHT---TCEEEEECSC-STTHHHHHHTTC
T ss_pred cCCcCCcEEEEEcCcHHHHHHHHHHHHc---CCEEEEEecc-HHHHHHHHHhhc
Confidence 3456788999999988999999888876 7899999999 999998888764
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=94.48 E-value=0.027 Score=48.74 Aligned_cols=50 Identities=14% Similarity=0.065 Sum_probs=41.9
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG 89 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~ 89 (220)
..+...++|||+. .|.+++.++...+...++|+++||+ |...+..+++++
T Consensus 210 l~kn~vfIDVGAn-iG~~s~~f~~~~~~~~~kV~aFEP~-p~n~~~LkkNi~ 259 (395)
T d2py6a1 210 FSDSEKMVDCGAS-IGESLAGLIGVTKGKFERVWMIEPD-RINLQTLQNVLR 259 (395)
T ss_dssp CCSSCEEEEETCT-TSHHHHHHHHHHTSCCSEEEEECCC-HHHHHHHHHHHH
T ss_pred cCCCCEEEECCcC-CCHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHHHH
Confidence 4566789999985 9999999887776546899999999 999999888764
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=94.36 E-value=0.84 Score=38.80 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=81.3
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEF 97 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~ 97 (220)
..+.-.|-...|=..|+...++...+-..+ |.+++. |...+++ |.+|++.+.-=.......++.+....-.+.+
T Consensus 52 Y~R~~nPt~~~le~~la~LEg~~~a~~~~S---GMaAi~~~l~~l~~~-Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~ 127 (391)
T d1cl1a_ 52 YGRRGTLTHFSLQQAMCELEGGAGCVLFPC---GAAAVANSILAFIEQ-GDHVLMTNTAYEPSQDFCSKILSKLGVTTSW 127 (391)
T ss_dssp CTTTCCHHHHHHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHHCCT-TCEEEEETTSCHHHHHHHHHTGGGGTCEEEE
T ss_pred eECCCChhHHHHHHHHHHHhCCccEEEecc---ccceeeehhhcccCC-CCeEEEecccccchhhhhhhccccccccccc
Confidence 346788999999999999999988886654 555543 3334444 8898887655244455555555533234555
Q ss_pred EEc-chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 98 VKG-DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 98 v~g-da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+.. |..++...+.+..++|++-.+-.. .+...+-+.+... .+|.++|+||.+-
T Consensus 128 ~d~~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~----~~g~~~vVDnT~a 185 (391)
T d1cl1a_ 128 FDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSV----VPDAIIMIDNTWA 185 (391)
T ss_dssp ECTTCGGGGGGTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH----CTTCEEEEECTTT
T ss_pred ccCccccccccccccccceeeecccCcccccccccHHHHHHHHhc----cCCcEEEEecccc
Confidence 553 444444333467899999887621 3445555544444 2599999999984
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=94.30 E-value=0.016 Score=42.62 Aligned_cols=99 Identities=10% Similarity=0.005 Sum_probs=57.8
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
+|+-||+|..|.. ||..+.+.+-.|+.++.+ ++..+..+..-.........+..+..+.+ ..+|+||+-...
T Consensus 2 kI~IiGaG~iG~~---~a~~L~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~D~iii~vka 73 (167)
T d1ks9a2 2 KITVLGCGALGQL---WLTALCKQGHEVQGWLRV-PQPYCSVNLVETDGSIFNESLTANDPDFL----ATSDLLLVTLKA 73 (167)
T ss_dssp EEEEECCSHHHHH---HHHHHHHTTCEEEEECSS-CCSEEEEEEECTTSCEEEEEEEESCHHHH----HTCSEEEECSCG
T ss_pred EEEEECcCHHHHH---HHHHHHHCCCceEEEEcC-HHHhhhhccccCCccccccccccchhhhh----cccceEEEeecc
Confidence 6888998755543 333333336689999999 65332110000011111233333433433 468999998887
Q ss_pred CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 123 DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 123 ~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+..+.++.+.+. +.+..-++.+-|-+
T Consensus 74 --~~~~~~~~~l~~~--~~~~~~Iv~~qNG~ 100 (167)
T d1ks9a2 74 --WQVSDAVKSLAST--LPVTTPILLIHNGM 100 (167)
T ss_dssp --GGHHHHHHHHHTT--SCTTSCEEEECSSS
T ss_pred --cchHHHHHhhccc--cCcccEEeeccCcc
Confidence 7788899999998 76544455555644
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=94.26 E-value=0.25 Score=42.39 Aligned_cols=127 Identities=14% Similarity=0.071 Sum_probs=80.4
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK 99 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~ 99 (220)
..+.-.|....|=..|+...++...+-..+| .+..+..+...+++ |.+|++.+.-=.......+..+....-.++++.
T Consensus 53 Y~R~~nPT~~~LE~~la~LEg~~~a~~~~SG-maAi~~~l~~l~~~-Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d 130 (392)
T d1gc0a_ 53 YSRISNPTLNLLEARMASLEGGEAGLALASG-MGAITSTLWTLLRP-GDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVD 130 (392)
T ss_dssp ----CCHHHHHHHHHHHHHHTCSEEEEESSH-HHHHHHHHHHHCCT-TCEEEEESSCCSHHHHHHHHTGGGGTCEEEEEC
T ss_pred ecCCCChHHHHHHHHHHHHhCCcceeehhhH-HHHHHHHHHhhccC-CCeeecccccchhhhhhhhhhhccCCcccccCC
Confidence 3467889999999999999999888877653 45444444444554 889888776535555666666653322466664
Q ss_pred c-chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 100 G-DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 100 g-da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
. |.+++-..+.+.-++||+-.+... .+...+-+.+.+ +|..+|+||++-
T Consensus 131 ~~d~~~~~~ai~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~------~g~~~vvDnT~a 184 (392)
T d1gc0a_ 131 MADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARK------HGATVVVDNTYC 184 (392)
T ss_dssp TTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGG------GTCEEEEECTTT
T ss_pred ccCHHHHHHhCCCCCeEEEecccccceeeecchHHHHHHHHh------cCCEEEEecCcc
Confidence 3 444443333567899999887622 244444444443 499999999984
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=93.60 E-value=0.89 Score=33.11 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=47.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHH-HHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDA-SKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~-Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
|.+|.-||+|.+|.+..+++ ++.....+++-+|.+ ++.++- +...-. .+.....+..++-.+.+ ..-|+|+
T Consensus 1 p~Ki~IIGaG~VG~~~a~~l-~~~~l~~ElvL~D~~-~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~----~daDvVV 74 (143)
T d1llda1 1 PTKLAVIGAGAVGSTLAFAA-AQRGIAREIVLEDIA-KERVEAEVLDMQHGSSFYPTVSIDGSDDPEIC----RDADMVV 74 (143)
T ss_dssp CCEEEEECCSHHHHHHHHHH-HHTTCCSEEEEECSS-HHHHHHHHHHHHHTGGGSTTCEEEEESCGGGG----TTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHH-HhcCCCcEEEEEEec-cccchhHHHHHHhccccCCCceeecCCCHHHh----hCCcEEE
Confidence 56788899998898666555 444446799999999 665432 222211 23234555544434434 3469999
Q ss_pred EcCCC
Q 042616 118 IDCNI 122 (220)
Q Consensus 118 iD~~k 122 (220)
+-+..
T Consensus 75 itaG~ 79 (143)
T d1llda1 75 ITAGP 79 (143)
T ss_dssp ECCCC
T ss_pred Eeccc
Confidence 98876
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=93.44 E-value=0.21 Score=37.80 Aligned_cols=94 Identities=17% Similarity=0.011 Sum_probs=61.3
Q ss_pred CEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEc
Q 042616 42 QLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLID 119 (220)
Q Consensus 42 ~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD 119 (220)
+.||-.| +|++|..++.||+++ |.+|+++-.+ ++..+.+++.-. -.++.-+-.+....+ ...+|.+ +|
T Consensus 33 ~~vlV~gasGGVG~~aiQlAk~~---Ga~Via~~~~-~~k~~~~~~lGa-----d~vi~~~~~~~~~~l~~~~~~~v-vD 102 (177)
T d1o89a2 33 GEIVVTGASGGVGSTAVALLHKL---GYQVVAVSGR-ESTHEYLKSLGA-----SRVLPRDEFAESRPLEKQVWAGA-ID 102 (177)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHT---TCCEEEEESC-GGGHHHHHHHTE-----EEEEEGGGSSSCCSSCCCCEEEE-EE
T ss_pred CcEEEEEccccchHHHHHHHHHc---CCCeEEEecc-hhHHHHHHhhcc-----ccccccccHHHHHHHHhhcCCee-EE
Confidence 5777665 478999999999986 7899999999 888887776421 122222222222222 2457875 58
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+-- + +.++...+. +++ +|.+|.....
T Consensus 103 ~Vg--g---~~~~~~l~~--l~~-~Griv~~G~~ 128 (177)
T d1o89a2 103 TVG--D---KVLAKVLAQ--MNY-GGCVAACGLA 128 (177)
T ss_dssp SSC--H---HHHHHHHHT--EEE-EEEEEECCCT
T ss_pred Ecc--h---HHHHHHHHH--hcc-ccceEeeccc
Confidence 755 3 457788887 765 7877776433
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=93.43 E-value=1.2 Score=37.94 Aligned_cols=127 Identities=15% Similarity=0.119 Sum_probs=81.8
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK 99 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~ 99 (220)
..+.-.|.+..|=..|+...++...+-..+| .+..+..|..-+++ |.+|++.+.--.......+..+....=.++++.
T Consensus 57 Y~R~~nPT~~~LE~~la~LEgg~~a~~~sSG-maAi~~~l~~ll~~-Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd 134 (397)
T d1y4ia1 57 YTRLGNPTTDALEKKLAVLERGEAGLATASG-ISAITTTLLTLCQQ-GDHIVSASAIYGCTHAFLSHSMPKFGINVRFVD 134 (397)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTCSEEEEESSH-HHHHHHHHHHHCCT-TCEEEEESSSCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred eeCCCCHHHHHHHHHHHHHhCCccceeehHH-HHHHHHHHhhccCC-CCeeeeecccccccchhhhcccCCCceEeeccC
Confidence 3467889999999999999998887766643 44444444444454 899988877623444555555542222466665
Q ss_pred cc-hhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 100 GD-AQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 100 gd-a~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.+ ..++-..+.++-.+||+-.+-.. .+...+.+.+.+ .|.++++||.+-
T Consensus 135 ~~d~~~~~~~i~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~------~gi~~vvDnT~a 188 (397)
T d1y4ia1 135 AGKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQ------QGALLVVDNTFM 188 (397)
T ss_dssp TTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHH------TTCEEEEECTTT
T ss_pred CCCHHHHHHhcCCCCcEEEecCCcccceeecccHHHHHHhhc------CCceEEecCccc
Confidence 43 34443333467899999987621 344555554444 499999999974
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=93.32 E-value=1 Score=32.89 Aligned_cols=75 Identities=16% Similarity=0.020 Sum_probs=47.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHH-HHHHhc---ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDA-SKKSLG---RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~-Ar~~l~---g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
+++|.-||+|.+|++....+ +......+++-+|.+ +++++. +..... .....+.+..+|..+ + ..-|+|
T Consensus 1 ~kKI~IIGaG~VG~~~a~~l-~~~~~~~elvL~Di~-~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~-l----~~adiV 73 (146)
T d1hyha1 1 ARKIGIIGLGNVGAAVAHGL-IAQGVADDYVFIDAN-EAKVKADQIDFQDAMANLEAHGNIVINDWAA-L----ADADVV 73 (146)
T ss_dssp CCEEEEECCSHHHHHHHHHH-HHHTCCSEEEEECSS-HHHHHHHHHHHHHHGGGSSSCCEEEESCGGG-G----TTCSEE
T ss_pred CCeEEEECcCHHHHHHHHHH-HhcCCCceEEEEecc-cchhhhHHHhhhccccccCCccceeccCHHH-h----ccccEE
Confidence 47888899988887655533 333336799999999 666532 222222 223345667777555 3 356999
Q ss_pred EEcCCC
Q 042616 117 LIDCNI 122 (220)
Q Consensus 117 fiD~~k 122 (220)
++-+..
T Consensus 74 VitaG~ 79 (146)
T d1hyha1 74 ISTLGN 79 (146)
T ss_dssp EECCSC
T ss_pred EEeccc
Confidence 997653
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.32 E-value=1.5 Score=37.14 Aligned_cols=129 Identities=19% Similarity=0.087 Sum_probs=81.9
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+.-.|.+..|=..|+...++...+-..+ |..++..+.++-..+++|++.+.-=.......+..+....-.+.++..
T Consensus 50 sR~gnPT~~~lE~~la~LE~~~~a~~~sS---GmaAi~~~l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~ 126 (393)
T d1n8pa_ 50 SRSQNPNRENLERAVAALENAQYGLAFSS---GSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTND 126 (393)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCSEEEEESC---HHHHHHHHHHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESS
T ss_pred eCCCChHHHHHHHHHHHHhCCceEEEecC---chhHHHhhhhcccCCCeeeeeeeecccchhhhhhhhhcccceeEEeec
Confidence 46778999999999999999988876654 444443333333348898887665244445555555422234667665
Q ss_pred chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+..++-....+..++||+-.+... .+...+-+.+.+. -...|.++|+||.+-
T Consensus 127 ~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~--~~~~g~~lvVDnT~a 182 (393)
T d1n8pa_ 127 LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKH--AAGQDVILVVDNTFL 182 (393)
T ss_dssp HHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHH--TTTTTCEEEEECTTT
T ss_pred chHHHHHHhhhhcceeEecCcchhhhhccchhhhhhhhhhh--cccCCceEEEecCcc
Confidence 444433233567899999987621 3556556666654 223589999999983
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=93.12 E-value=0.052 Score=42.42 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=37.1
Q ss_pred EEEEcchhhhhhhcC-CCccEEEEcCCCCC--------ccHH-------HHHHHHHhhcCCCCCCEEEEEe
Q 042616 96 EFVKGDAQKLLMGDY-RGADFVLIDCNIDI--------DGHK-------NVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 96 e~v~gda~~~L~~~~-~~~D~VfiD~~k~~--------~~y~-------~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++++||..++|+.+. +++|+||.|++-.. ..+. ++++.+.+. |+| ||.+++.
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rv--Lk~-~g~~~~~ 73 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDK--LDK-DGSLYIF 73 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhc--ccc-Ccccccc
Confidence 589999999998874 68999999987410 1222 356677888 876 6666544
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.69 E-value=2.2 Score=35.95 Aligned_cols=144 Identities=13% Similarity=0.071 Sum_probs=86.5
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+.-.|....|=..|+...++...+-..+ |.+++....++-+.|.+|++.+.--.......+..+....-.+.++..
T Consensus 44 ~R~~nPt~~~le~~la~LE~~~~a~~fsS---GMaAisall~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~ 120 (380)
T d1ibja_ 44 TRSGNPTRDALESLLAKLDKADRAFCFTS---GMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT 120 (380)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCSEEEEESS---HHHHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT
T ss_pred eCCCChHHHHHHHHHHHHcCCceEEehhh---HHHHHHHHHHhhCCCCEEEEEecccccccchhhhhhccccccccccCc
Confidence 35678888899999999999888775554 555554333444458999887766233334444444433234566654
Q ss_pred ch-hhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCccceEEEeeecCCcEEEE
Q 042616 101 DA-QKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWRGYKTHFLPIGEGLLVT 175 (220)
Q Consensus 101 da-~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~~~~~~s~~lPig~Gl~v~ 175 (220)
+- .++...+..+.++||+..+... .+...+-+.+.+ .|..+|+||.+-.. ...-|+.-|..|.
T Consensus 121 ~~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~------~g~~~vVDnT~atP------~~~~Pl~~GaDiV 188 (380)
T d1ibja_ 121 TKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHA------QGALVLVDNSIMSP------VLSRPLELGADIV 188 (380)
T ss_dssp TSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHT------TTCEEEEECTTTCT------TTCCGGGTTCSEE
T ss_pred chHHHHHHHhccCccEEEeccccccccccccHHHHHHHHHH------cCCeEEeecccccc------ccccccccCCCEE
Confidence 33 3433333567899999876621 344444444443 48999999998421 1123555555555
Q ss_pred EEee
Q 042616 176 RIGE 179 (220)
Q Consensus 176 ~~~~ 179 (220)
.-..
T Consensus 189 vhS~ 192 (380)
T d1ibja_ 189 MHSA 192 (380)
T ss_dssp EEET
T ss_pred Eecc
Confidence 5544
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=92.41 E-value=0.26 Score=37.37 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccC-CcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYA-NCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~-~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+.|+||-.|. +|-....+|..+.+.|.+|+.++.+ ++.++...+.+. ... ....+-..|..+ +....+.+|++
T Consensus 21 l~gK~vlItGa--sgGIG~~ia~~la~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~iDil 96 (191)
T d1luaa1 21 VKGKKAVVLAG--TGPVGMRSAALLAGEGAEVVLCGRK-LDKAQAAADSVNKRFKVNVTAAETADDAS-RAEAVKGAHFV 96 (191)
T ss_dssp CTTCEEEEETT--TSHHHHHHHHHHHHTTCEEEEEESS-HHHHHHHHHHHHHHHTCCCEEEECCSHHH-HHHHTTTCSEE
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHhhccchhhcccc-hHHHHHHHHHHHhccchhhhhhhcccHHH-HHHHhcCcCee
Confidence 36799999984 2333444444444458999999999 888887777775 221 112233334344 33446789999
Q ss_pred EEcCCC
Q 042616 117 LIDCNI 122 (220)
Q Consensus 117 fiD~~k 122 (220)
|--+..
T Consensus 97 in~Ag~ 102 (191)
T d1luaa1 97 FTAGAI 102 (191)
T ss_dssp EECCCT
T ss_pred eecCcc
Confidence 876543
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=92.37 E-value=1.2 Score=33.20 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=45.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCC---CcEEEEEeCCchhHHHHHHHHh----cccCCcEEE-EEcchhhhhhhcCCC
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQT---GGRVVCILSGVIGDIDASKKSL----GRYANCIEF-VKGDAQKLLMGDYRG 112 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~---~grV~tIE~d~~~~~~~Ar~~l----~g~~~~Ve~-v~gda~~~L~~~~~~ 112 (220)
.-+|.-||+|++|...+......... ...++-+|.| +++++.....+ .......++ ...|..+.+ ..
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal----~~ 77 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDND-KERQDRIAGACDVFIREKAPDIEFAATTDPEEAF----TD 77 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSC-HHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHH----SS
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCC-hhHHHHHHHHHHHHHHHhCCCcceEecCChhhcc----CC
Confidence 45688899876654433322222211 2589999999 88876433333 222223443 345666766 36
Q ss_pred ccEEEEcCCC
Q 042616 113 ADFVLIDCNI 122 (220)
Q Consensus 113 ~D~VfiD~~k 122 (220)
.|+|++-+..
T Consensus 78 AD~Vvitag~ 87 (167)
T d1u8xx1 78 VDFVMAHIRV 87 (167)
T ss_dssp CSEEEECCCT
T ss_pred CCEEEECCCc
Confidence 7999999876
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=92.35 E-value=1.4 Score=32.17 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=45.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----ccCCcEEE-EEcchhhhhhhcCCCc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RYANCIEF-VKGDAQKLLMGDYRGA 113 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~~~~Ve~-v~gda~~~L~~~~~~~ 113 (220)
.+..+|.-||+|.+|. ++++..+... -..++-+|.+ ++.++--..-+. ....+... ...+.++.+ ..-
T Consensus 5 ~k~~KI~IIGaG~VG~-~lA~~l~~~~-~~el~L~D~~-~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~a 77 (154)
T d1pzga1 5 QRRKKVAMIGSGMIGG-TMGYLCALRE-LADVVLYDVV-KGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAAL----TGA 77 (154)
T ss_dssp SCCCEEEEECCSHHHH-HHHHHHHHHT-CCEEEEECSS-SSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHH----TTC
T ss_pred cCCCcEEEECCCHHHH-HHHHHHHhCC-CceEEEEEec-cccchhHHHHHhhhccccCCeeEEeccCchhhhh----cCC
Confidence 4567888899998995 5554444444 3589999999 665543322222 12223333 344444544 357
Q ss_pred cEEEEcCCC
Q 042616 114 DFVLIDCNI 122 (220)
Q Consensus 114 D~VfiD~~k 122 (220)
|+|++-+..
T Consensus 78 diVvitag~ 86 (154)
T d1pzga1 78 DCVIVTAGL 86 (154)
T ss_dssp SEEEECCSC
T ss_pred CeEEEeccc
Confidence 999997743
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=92.35 E-value=0.47 Score=38.72 Aligned_cols=123 Identities=15% Similarity=0.015 Sum_probs=81.9
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ 103 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~ 103 (220)
..+....++..+...+... -+.+..| |.+..+..+++ ..|++.+|.. |+..+.-++++.+. .++.+...|+.
T Consensus 67 ~p~~~~~yl~~v~~~n~~~-~l~~YPG----SP~ia~~llR~-~Drl~l~ELH-p~e~~~L~~~~~~~-~~~~v~~~DG~ 138 (271)
T d2oo3a1 67 LPSLFLEYISVIKQINLNS-TLSYYPG----SPYFAINQLRS-QDRLYLCELH-PTEYNFLLKLPHFN-KKVYVNHTDGV 138 (271)
T ss_dssp SCGGGHHHHHHHHHHSSSS-SCCEEEC----HHHHHHHHSCT-TSEEEEECCS-HHHHHHHTTSCCTT-SCEEEECSCHH
T ss_pred hhhhHHHHHHHHHHhCCCC-CcCcCCC----CHHHHHHhCCC-CCceEEeecC-HHHHHHHHHHhccC-CCceEEcCchH
Confidence 3455667777665554433 3345555 34444455565 8899999999 99999988888753 57999999998
Q ss_pred hhhhhcC---CCccEEEEcCCCCC-ccHHHHHHHHHhhc-CCCCCCEEEEEecCCCC
Q 042616 104 KLLMGDY---RGADFVLIDCNIDI-DGHKNVFRAAKESV-MHGSGAGVIVGYNALPK 155 (220)
Q Consensus 104 ~~L~~~~---~~~D~VfiD~~k~~-~~y~~~l~~l~~~~-~L~~~Ggviv~dNv~~~ 155 (220)
+.+..+. ..=-+|+||.+-+. .+|.++.+.+...- +- |.|.++|-+=+..+
T Consensus 139 ~~l~allPP~~rRgLVLIDPpYE~k~ey~~v~~~l~~a~kr~-~~g~~~iWYPi~~~ 194 (271)
T d2oo3a1 139 SKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKF-STGLYCVWYPVVNK 194 (271)
T ss_dssp HHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHC-TTSEEEEEEEESSH
T ss_pred HHHHhhCCCCCCceEEEecCCcCCHHHHHHHHHHHHHHHHhC-CCceEEEEeeccCc
Confidence 8775542 33469999987522 57777666554430 02 55777777766654
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=92.25 E-value=1.4 Score=31.95 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=58.6
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHH-HHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDID-ASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~-~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
-++|.-||+|.+|++... ..+.......|+-+|.+ ++.++ .|..... .......+..+|..+. ..-|+|+
T Consensus 5 ~~KI~IIGaG~VG~~~A~-~l~~~~~~~elvL~D~~-~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~~-----~~adivv 77 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAF-AMAQQGIAEEFVIVDVV-KDRTKGDALDLEDAQAFTAPKKIYSGEYSDC-----KDADLVV 77 (146)
T ss_dssp BCEEEEECCSHHHHHHHH-HHHHHTCCSEEEEECSS-HHHHHHHHHHHHGGGGGSCCCEEEECCGGGG-----TTCSEEE
T ss_pred CCEEEEECCCHHHHHHHH-HHHhcCCCcEEEEeecc-cchhHHHHHHHhccccccCCceEeeccHHHh-----ccccEEE
Confidence 457888999888875443 33333335799999999 65543 2322222 2223456677886542 3569999
Q ss_pred EcCCCCC--------------ccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 118 IDCNIDI--------------DGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 118 iD~~k~~--------------~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+-+.... .-..++.+.+.+. .|++-++++-|
T Consensus 78 itag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~---~p~aivivvtN 122 (146)
T d1ez4a1 78 ITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS---GFDGIFLVAAN 122 (146)
T ss_dssp ECCCC----------CHHHHHHHHHHHHHHHHHT---TCCSEEEECSS
T ss_pred EecccccCCCCCHHHHHHHHHHHHHHHHHHHhhc---CCCcEEEEeCC
Confidence 9765411 0123556666666 36555555544
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=91.89 E-value=0.31 Score=34.06 Aligned_cols=70 Identities=10% Similarity=-0.012 Sum_probs=50.6
Q ss_pred CcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 67 GGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 67 ~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
|.||.-||-+ +...+..+..++...-.+.....++.+.+..+ ...||+|++|-..+..+-.+.++.+++.
T Consensus 1 GkrILivDD~-~~~~~~l~~~L~~~g~~v~~~a~~~~~al~~~~~~~~dliilD~~mp~~~G~e~~~~ir~~ 71 (118)
T d1u0sy_ 1 GKRVLIVDDA-AFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKI 71 (118)
T ss_dssp CCEEEEECSC-HHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHH
T ss_pred CCEEEEEeCC-HHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHhccCCEEEEecCCCCCCHHHHHHHHHHh
Confidence 4588889999 88889999988732223444456777766443 3579999999988445667888888766
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.88 E-value=0.11 Score=40.93 Aligned_cols=51 Identities=14% Similarity=0.050 Sum_probs=36.9
Q ss_pred EEEEcchhhhhhhcC-CCccEEEEcCCCC--------CccH----HHHHHHHHhhcCCCCCCEEEEE
Q 042616 96 EFVKGDAQKLLMGDY-RGADFVLIDCNID--------IDGH----KNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 96 e~v~gda~~~L~~~~-~~~D~VfiD~~k~--------~~~y----~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
-+++||..+.|+.+. +++|+||.|++-. ..+| .++++.+.+. |++ ||.++.
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rv--Lk~-~G~~~~ 69 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERV--LSP-TGSIAI 69 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHH--EEE-EEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHH--hCC-CccEEE
Confidence 578899999998874 7899999999841 1345 4445667787 876 565554
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=91.77 E-value=0.14 Score=40.90 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=38.2
Q ss_pred CcEEEEEcchhhhhhhcC-CCccEEEEcCCCCC-----------ccH----HHHHHHHHhhcCCCCCCEEEEE
Q 042616 93 NCIEFVKGDAQKLLMGDY-RGADFVLIDCNIDI-----------DGH----KNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 93 ~~Ve~v~gda~~~L~~~~-~~~D~VfiD~~k~~-----------~~y----~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
++=.+++||+.+.|..+. +++|+|+.|++-.. .+| .+++..+.+. |++ +|.++.
T Consensus 11 ~~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rv--Lk~-~G~i~i 80 (320)
T d1booa_ 11 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKK--LKP-DGSFVV 80 (320)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHH--EEE-EEEEEE
T ss_pred CCCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHh--Ccc-cCcccc
Confidence 345899999999998874 68999999987411 122 3457777787 877 555443
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=91.77 E-value=0.65 Score=37.35 Aligned_cols=98 Identities=13% Similarity=0.016 Sum_probs=68.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
++.-+|||+-|| +|-+++.|-.| |- .+.++|.| +.+++.-+.|+.. . .++|..++-+.....+|+++
T Consensus 9 ~~~lrv~~lFsG-~Gg~~~gl~~a----G~~~v~a~e~d-~~a~~~~~~N~~~---~---~~~Di~~~~~~~~~~~Dll~ 76 (327)
T d2c7pa1 9 LTGLRFIDLFAG-LGGFRLALESC----GAECVYSNEWD-KYAQEVYEMNFGE---K---PEGDITQVNEKTIPDHDILC 76 (327)
T ss_dssp TTTCEEEEETCT-TTHHHHHHHHT----TCEEEEEECCC-HHHHHHHHHHHSC---C---CBSCGGGSCGGGSCCCSEEE
T ss_pred CCCCeEEEECcc-ccHHHHHHHHC----CCeEEEEEeCC-HHHHHHHHHHCCC---C---CcCchhcCchhhcceeeeee
Confidence 456789999986 88888888765 43 45779999 9888888888742 1 24777766544446788887
Q ss_pred EcCCC---------------CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 118 IDCNI---------------DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 118 iD~~k---------------~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
-..+= ++..+.++++.+... +| -+++..||-
T Consensus 77 ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~---kP--~~~~lENV~ 122 (327)
T d2c7pa1 77 AGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREK---KP--KVVFMENVK 122 (327)
T ss_dssp EECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHH---CC--SEEEEEEEG
T ss_pred cccccchhhhhhhhcCCcccchhHHHHHHHHHhcc---CC--cEEecccch
Confidence 54331 224667788888775 45 578888885
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=91.76 E-value=0.15 Score=41.51 Aligned_cols=133 Identities=8% Similarity=-0.018 Sum_probs=78.0
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHh--hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc
Q 042616 12 AYLQALKMGKRGKEPDVGEFISALAA--GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG 89 (220)
Q Consensus 12 aY~~~l~~~~~~~~p~~~~~L~~La~--~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~ 89 (220)
.|+..-+......+.....|....-+ ..+..+|||+||+ .|..|-.++.- .+ ...|.+++.- -...+ ......
T Consensus 36 ~~~~~~~~~~~~~SR~~~Kl~~~~~~~~~~~~~~vvDlG~~-pGgws~~~a~~-~~-v~~V~g~~iG-~d~~e-~P~~~~ 110 (257)
T d2p41a1 36 EGIKRGETDHHAVSRGSAKLRWFVERNLVTPEGKVVDLGCG-RGGWSYYCGGL-KN-VREVKGLTKG-GPGHE-EPIPMS 110 (257)
T ss_dssp HHHHTTCCSSCCSSTHHHHHHHHHHTTSSCCCEEEEEETCT-TSHHHHHHHTS-TT-EEEEEEECCC-STTSC-CCCCCC
T ss_pred HHHHhccccCCCcchHHHHHHHHHHhcCccCCCeEEEecCC-CChHHHHHHhh-cC-CCceeEEEec-Ccccc-CCcccc
Confidence 33443333334667777777665544 2455789999996 89888877642 22 4577777763 11110 001111
Q ss_pred ccC-CcEEEEEcchhhhhhhcCCCccEEEEcCCCCC-------ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 90 RYA-NCIEFVKGDAQKLLMGDYRGADFVLIDCNIDI-------DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 90 g~~-~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~-------~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
.+. +-+++..++--..++ ..+.|.|+.|..... ....++++.+.+- |+| ||-+|+. ||.+
T Consensus 111 ~~~~ni~~~~~~~dv~~l~--~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~w--Lk~-gg~FvvK-Vl~p 178 (257)
T d2p41a1 111 TYGWNLVRLQSGVDVFFIP--PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENW--LSN-NTQFCVK-VLNP 178 (257)
T ss_dssp STTGGGEEEECSCCTTTSC--CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHH--CCT-TCEEEEE-ESCC
T ss_pred ccccccccchhhhhHHhcC--CCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHH--ccc-CCEEEEE-ECCC
Confidence 111 336776666544443 368999999975411 2345778888888 886 7777776 6654
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.59 E-value=1.7 Score=31.46 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=48.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-c---cCCcEEEEEcchhhhhhhcCCCcc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-R---YANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g---~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
.+.++|.-||+|.+|++..+.+ +......+++-+|.+ ++.++--..-+. . ....+.+..+|.++ + ..-|
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l-~~~~l~~el~L~Di~-~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~-l----~daD 76 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFAL-MNQGIADEIVLIDAN-ESKAIGDAMDFNHGKVFAPKPVDIWHGDYDD-C----RDAD 76 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHH-HHHTCCSEEEEECSS-HHHHHHHHHHHHHHTTSSSSCCEEEECCGGG-T----TTCS
T ss_pred CCCCeEEEECcCHHHHHHHHHH-HhcCCCceEEEEeec-cccccchhccHhhCccccCCCeEEEECCHHH-h----ccce
Confidence 4567898899988887655443 444446799999999 766443222222 1 22446677777544 2 3569
Q ss_pred EEEEcCCC
Q 042616 115 FVLIDCNI 122 (220)
Q Consensus 115 ~VfiD~~k 122 (220)
+|++-+..
T Consensus 77 vvvitag~ 84 (148)
T d1ldna1 77 LVVICAGA 84 (148)
T ss_dssp EEEECCSC
T ss_pred eEEEeccc
Confidence 99986544
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.58 E-value=0.24 Score=40.22 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=55.4
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCC---chhHHHHHHHHhc-ccCCcEEEEEcchhhhhhh--cCC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSG---VIGDIDASKKSLG-RYANCIEFVKGDAQKLLMG--DYR 111 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d---~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~~L~~--~~~ 111 (220)
..++++||-+| | +|+.+-+|+..+.+.|-+|+++|.. .....+..+.... ....+++++.+|..+.... ...
T Consensus 13 ~~~~k~iLVTG-~-tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~ 90 (341)
T d1sb8a_ 13 PAQPKVWLITG-V-AGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA 90 (341)
T ss_dssp HHSCCEEEEET-T-TSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT
T ss_pred CCCCCEEEEec-C-CCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccc
Confidence 45789999988 3 7999999988887767899999852 0333444444433 2225799999998765421 135
Q ss_pred CccEEEEcCCC
Q 042616 112 GADFVLIDCNI 122 (220)
Q Consensus 112 ~~D~VfiD~~k 122 (220)
..|.++..+..
T Consensus 91 ~~~~v~~~~a~ 101 (341)
T d1sb8a_ 91 GVDYVLHQAAL 101 (341)
T ss_dssp TCSEEEECCSC
T ss_pred ccccccccccc
Confidence 56777766544
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=91.55 E-value=0.33 Score=38.74 Aligned_cols=95 Identities=15% Similarity=0.061 Sum_probs=66.2
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCN 121 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~ 121 (220)
+|||+-|| +|-+++.|-.| |-+ +.++|.| +...+.-+.|+. -+++.+|..++-+.....+|+++-..+
T Consensus 2 k~~~lF~G-~Gg~~~gl~~a----G~~~~~a~e~d-~~a~~~~~~N~~-----~~~~~~Di~~~~~~~~~~~dll~~g~P 70 (324)
T d1dcta_ 2 NLISLFSG-AGGLDLGFQKA----GFRIICANEYD-KSIWKTYESNHS-----AKLIKGDISKISSDEFPKCDGIIGGPP 70 (324)
T ss_dssp EEEEESCS-SCHHHHHHHHH----TCEEEEEEECC-HHHHHHHHHHCC-----SEEEESCTTTSCGGGSCCCSEEEECCC
T ss_pred eEEEeCcC-cCHHHHHHHHC----CCEEEEEEeCC-HHHHHHHHHHCC-----CCCccCChhhCCHhHcccccEEeeccc
Confidence 69999986 78888888776 434 5699999 888877777763 245778888765444567899985533
Q ss_pred C--------C-------CccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 122 I--------D-------IDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 122 k--------~-------~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
- . ...+.++++.+... +| -+++..||-
T Consensus 71 Cq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~---~P--k~~~lENV~ 112 (324)
T d1dcta_ 71 CQSWSEGGSLRGIDDPRGKLFYEYIRILKQK---KP--IFFLAENVK 112 (324)
T ss_dssp CTTTSSSSCCCCSSSHHHHHHHHHHHHHHHH---CC--SEEEEEEEG
T ss_pred ccccccccccccccccccchHHHHHHHHHhh---CC--ceeeccccc
Confidence 2 0 02335667766664 55 588999995
|
| >d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Receiver domain of the ethylene receptor domain: Receiver domain of the ethylene receptor species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.35 E-value=0.48 Score=33.77 Aligned_cols=68 Identities=12% Similarity=-0.008 Sum_probs=50.2
Q ss_pred CcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHh
Q 042616 67 GGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKE 136 (220)
Q Consensus 67 ~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~ 136 (220)
|-||.-||-+ +...+..++.++...-.++ ...++.+.+..+..+||+||+|..-+.-+-.+..+.+.+
T Consensus 7 g~rILvVDD~-~~~~~~l~~~L~~~G~~v~-~a~~g~eal~~l~~~~dlillD~~mP~~dG~el~~~ir~ 74 (134)
T d1dcfa_ 7 GLKVLVMDEN-GVSRMVTKGLLVHLGCEVT-TVSSNEECLRVVSHEHKVVFMDVCMPGVENYQIALRIHE 74 (134)
T ss_dssp TCEEEEECSC-HHHHHHHHHHHHHTTCEEE-EESSHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHHH
T ss_pred CCEEEEEeCC-HHHHHHHHHHHHHCCCEEE-EECCHHHHHHHhhcCCCeEEEEeccCCCchHHHHHHHHH
Confidence 5689999999 8888889998884323454 567778878665678999999998733344666677754
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=91.26 E-value=3 Score=35.12 Aligned_cols=124 Identities=19% Similarity=0.117 Sum_probs=78.1
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHH--HHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTL--ALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFV 98 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl--~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v 98 (220)
.+.-.|-+..|=..|+...++...+-..+ |.+++ .|...+++ +.+|++.+.--..........+....-.+.++
T Consensus 45 ~R~~nPt~~~le~~la~LEgg~~a~~~sS---GMaAi~~~l~~l~~~-gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~ 120 (384)
T d1cs1a_ 45 SRRGNPTRDVVQRALAELEGGAGAVLTNT---GMSAIHLVTTVFLKP-GDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFV 120 (384)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHHCCT-TCEEEEETTCCHHHHHHHHHHHTTTSCEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHhCCCceEEecC---hHHHHHHHHhhcccc-cceecccccccchhhhhhhhhhcccccccccc
Confidence 46778999999999999999988876554 55444 34433444 88888886552344455555554222234554
Q ss_pred E-cchhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 99 K-GDAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 99 ~-gda~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
. .|..++.....++.++||+-.+... .+...+-+.+.+ .|.++|+||.+-
T Consensus 121 d~~d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~ia~~------~g~~~vVDNT~a 175 (384)
T d1cs1a_ 121 DQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLARE------VGAVSVVDNTFL 175 (384)
T ss_dssp CTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHH------TTCEEEEECTTT
T ss_pred cCCCHHHHHhhccccccEEEEeccccccceeccHHHHhhhhhh------cCcEEEEecccc
Confidence 4 3444433233467799999987622 344555555544 489999999984
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.23 E-value=0.43 Score=34.44 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=49.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch--hhhhhhcCCCccEEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA--QKLLMGDYRGADFVLI 118 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda--~~~L~~~~~~~D~Vfi 118 (220)
.|+||-||+|.+|...+. .+.+.+-.|+.+|.+ .+.++...+.+. .......+. ...+.......|.++.
T Consensus 2 ~K~IliiGaG~~G~~~a~---~L~~~g~~V~v~dr~-~~~a~~l~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~i~ 73 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLD---VLTDSGIKVTVACRT-LESAKKLSAGVQ----HSTPISLDVNDDAALDAEVAKHDLVIS 73 (182)
T ss_dssp CCEEEEECCSTTHHHHHH---HHHTTTCEEEEEESC-HHHHHHHHTTCT----TEEEEECCTTCHHHHHHHHTTSSEEEE
T ss_pred CCEEEEECCCHHHHHHHH---HHHhCCCEEEEEECC-hHHHHHHHhccc----ccccccccccchhhhHhhhhccceeEe
Confidence 478999998877776553 333446689999999 777766555442 222222222 2222222346677776
Q ss_pred cCCCCCccHHHHHHHHHh
Q 042616 119 DCNIDIDGHKNVFRAAKE 136 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~ 136 (220)
-.+. .........+..
T Consensus 74 ~~~~--~~~~~~~~~~~~ 89 (182)
T d1e5qa1 74 LIPY--TFHATVIKSAIR 89 (182)
T ss_dssp CSCG--GGHHHHHHHHHH
T ss_pred eccc--hhhhHHHHHHHh
Confidence 5555 444444444443
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=91.16 E-value=1.2 Score=30.22 Aligned_cols=85 Identities=15% Similarity=0.102 Sum_probs=53.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.+.++|.-||-|++|.++|+.... +.|-.|+.-|..+....+ ...+ ..+++..+...+.+ ...|+|++
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~--~~G~~VsGSD~~~~~~~~---~L~~---~Gi~v~~g~~~~~i----~~~d~vV~ 73 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILL--NEGYQISGSDIADGVVTQ---RLAQ---AGAKIYIGHAEEHI----EGASVVVV 73 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHH--HHTCEEEEEESCCSHHHH---HHHH---TTCEEEESCCGGGG----TTCSEEEE
T ss_pred hhCCEEEEEEECHHHHHHHHHHHH--hCCCEEEEEeCCCChhhh---HHHH---CCCeEEECCccccC----CCCCEEEE
Confidence 457889889987899998753332 237899999987222222 2222 23667777776655 35799998
Q ss_pred cCCCCCccHHHHHHHHHhh
Q 042616 119 DCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~ 137 (220)
-..-. .+.+++.. +++.
T Consensus 74 S~AI~-~~npel~~-A~~~ 90 (96)
T d1p3da1 74 SSAIK-DDNPELVT-SKQK 90 (96)
T ss_dssp CTTSC-TTCHHHHH-HHHT
T ss_pred CCCcC-CCCHHHHH-HHHc
Confidence 88762 33454444 4443
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=91.15 E-value=1.2 Score=32.93 Aligned_cols=85 Identities=13% Similarity=0.019 Sum_probs=52.7
Q ss_pred CEEEEEcCCchHHHH-HHHHHHcCCCCcEEEE-EeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 42 QLIVMACSSIAVSRT-LALVAAARQTGGRVVC-ILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 42 ~~ILEIGtg~~G~sT-l~LA~A~~~~~grV~t-IE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
-+|.-||||..|... +......+. ...+++ .|++ ++.++...+.+. +..+..|..+++.. ..+|+|++-
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~-~~~i~~v~d~~-~~~~~~~~~~~~-----~~~~~~~~~ell~~--~~id~v~I~ 74 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSH-LFEITAVTSRT-RSHAEEFAKMVG-----NPAVFDSYEELLES--GLVDAVDLT 74 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTT-TEEEEEEECSS-HHHHHHHHHHHS-----SCEEESCHHHHHHS--SCCSEEEEC
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCC-CeEEEEEEecc-Hhhhhhhhcccc-----ccceeeeeeccccc--cccceeecc
Confidence 467778987444321 212222222 347776 4888 776655444432 22345788887743 679999998
Q ss_pred CCCCCccHHHHHHHHHhh
Q 042616 120 CNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~ 137 (220)
.+. ....++...+.+.
T Consensus 75 tp~--~~h~~~~~~al~~ 90 (181)
T d1zh8a1 75 LPV--ELNLPFIEKALRK 90 (181)
T ss_dssp CCG--GGHHHHHHHHHHT
T ss_pred ccc--ccccccccccccc
Confidence 887 7777777777775
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=90.89 E-value=0.25 Score=34.89 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=46.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh--hhhhc-CCCccEEEE
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK--LLMGD-YRGADFVLI 118 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~--~L~~~-~~~~D~Vfi 118 (220)
|+++-+|.|-. +..+|+.+...+-.|+.||.| ++.++.++.. ....+.||+.+ +|... ....|.+++
T Consensus 1 k~~iIiG~G~~---G~~la~~L~~~g~~vvvid~d-~~~~~~~~~~------~~~~~~gd~~~~~~l~~a~i~~a~~vi~ 70 (134)
T d2hmva1 1 KQFAVIGLGRF---GGSIVKELHRMGHEVLAVDIN-EEKVNAYASY------ATHAVIANATEENELLSLGIRNFEYVIV 70 (134)
T ss_dssp CCEEEECCSHH---HHHHHHHHHHTTCCCEEEESC-HHHHHHTTTT------CSEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred CEEEEECCCHH---HHHHHHHHHHCCCeEEEecCc-HHHHHHHHHh------CCcceeeecccchhhhccCCccccEEEE
Confidence 35666786544 445555555557789999999 8888766432 23566788754 34332 356899888
Q ss_pred cCCC
Q 042616 119 DCNI 122 (220)
Q Consensus 119 D~~k 122 (220)
-.+.
T Consensus 71 ~~~~ 74 (134)
T d2hmva1 71 AIGA 74 (134)
T ss_dssp CCCS
T ss_pred EcCc
Confidence 7765
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=90.81 E-value=0.22 Score=35.03 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=37.1
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCc-------hhHHHHHHHHhc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGV-------IGDIDASKKSLG 89 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~-------~~~~~~Ar~~l~ 89 (220)
....|++|+-||. |+.++-+|.++...+.+|+-++... ++..+.+++.++
T Consensus 18 ~l~~p~~v~IiGg---G~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~ 74 (117)
T d1onfa2 18 NIKESKKIGIVGS---GYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMK 74 (117)
T ss_dssp TCCCCSEEEEECC---SHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECC---chHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHH
Confidence 3456899999994 6777788888877788999999730 555666666665
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=90.81 E-value=2.5 Score=35.84 Aligned_cols=125 Identities=13% Similarity=0.114 Sum_probs=78.1
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE-c
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK-G 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~-g 100 (220)
+.-.|.+..|=..|+...++...+-..+| ....+..|..-++ .+.+|++.+.-=.......+..+....-.+.++. .
T Consensus 63 R~~nPt~~~LE~~la~LEgg~~a~~~sSG-MaAi~~~l~~l~~-~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~ 140 (398)
T d1qgna_ 63 RYGNPTTVVLEEKISALEGAESTLLMASG-MCASTVMLLALVP-AGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA 140 (398)
T ss_dssp GGCCHHHHHHHHHHHHHHTCSEEEEESCH-HHHHHHHHHHHSC-SSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS
T ss_pred CCCChHHHHHHHHHHHHhCCceEEEecCc-chHHHHHHhhccc-ccccccccccccchhhhhhccccccccccccccccc
Confidence 56789999999999999999888766543 4443333443344 4889988876524444455555543323355555 3
Q ss_pred chhhhhhhc-CCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 DAQKLLMGD-YRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 da~~~L~~~-~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+..+..... .++..+||+-.+-.. .+...+-+.+.+ .|.++|+||.+-
T Consensus 141 ~~~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~------~g~~~vVDnT~a 193 (398)
T d1qgna_ 141 DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHE------KGALVCIDGTFA 193 (398)
T ss_dssp CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHH------TTCEEEEECTTT
T ss_pred chhhhhhhhccccceEEEccCccccccccchHHHHHHHHhh------cCCEEEecceee
Confidence 333333222 367899999887621 354555555554 389999999984
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.36 E-value=2.2 Score=30.55 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=46.6
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHH-HHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDA-SKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~-Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+|--||+|.+|++... +.+......+++-+|.+ ++.++. +..... .+...+.+..+|.++ + ...|+|++-
T Consensus 2 KI~IIGaG~VG~~~a~-~l~~~~l~~el~L~Di~-~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~-~----~~adivvit 74 (140)
T d1a5za1 2 KIGIVGLGRVGSSTAF-ALLMKGFAREMVLIDVD-KKRAEGDALDLIHGTPFTRRANIYAGDYAD-L----KGSDVVIVA 74 (140)
T ss_dssp EEEEECCSHHHHHHHH-HHHHHTCCSEEEEECSS-HHHHHHHHHHHHHHGGGSCCCEEEECCGGG-G----TTCSEEEEC
T ss_pred EEEEECcCHHHHHHHH-HHHhCCCCCEEEEEecc-cccccchhccccccccccccccccCCcHHH-h----cCCCEEEEe
Confidence 4666899888876544 33444446799999999 666543 222222 333456667777554 3 357999998
Q ss_pred CCC
Q 042616 120 CNI 122 (220)
Q Consensus 120 ~~k 122 (220)
+..
T Consensus 75 ag~ 77 (140)
T d1a5za1 75 AGV 77 (140)
T ss_dssp CCC
T ss_pred ccc
Confidence 755
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=90.34 E-value=0.86 Score=31.86 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=49.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh--hhhhhc-CCCccEEEE
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ--KLLMGD-YRGADFVLI 118 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~--~~L~~~-~~~~D~Vfi 118 (220)
|+|+-+|. |-.+..++..+. +-.++.||.| ++..+..+. ..+.++.||+. +.|... ....+.+++
T Consensus 1 kHivI~G~---g~~g~~l~~~L~--~~~i~vi~~d-~~~~~~~~~------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~ 68 (129)
T d2fy8a1 1 RHVVICGW---SESTLECLRELR--GSEVFVLAED-ENVRKKVLR------SGANFVHGDPTRVSDLEKANVRGARAVIV 68 (129)
T ss_dssp CCEEEESC---CHHHHHHHHTSC--GGGEEEEESC-TTHHHHHHH------TTCEEEESCTTSHHHHHHTTCTTCSEEEE
T ss_pred CEEEEECC---CHHHHHHHHHHc--CCCCEEEEcc-hHHHHHHHh------cCccccccccCCHHHHHHhhhhcCcEEEE
Confidence 46777774 556667788775 4568889999 888776543 34789999984 455443 367899998
Q ss_pred cCCC
Q 042616 119 DCNI 122 (220)
Q Consensus 119 D~~k 122 (220)
..+.
T Consensus 69 ~~~~ 72 (129)
T d2fy8a1 69 NLES 72 (129)
T ss_dssp CCSS
T ss_pred eccc
Confidence 7765
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=90.29 E-value=2.6 Score=31.22 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=47.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCC---CCcEEEEEeCCchhHHHHHHHHhc----ccCCcEEEEE-cchhhhhhhcCCC
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQ---TGGRVVCILSGVIGDIDASKKSLG----RYANCIEFVK-GDAQKLLMGDYRG 112 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~---~~grV~tIE~d~~~~~~~Ar~~l~----g~~~~Ve~v~-gda~~~L~~~~~~ 112 (220)
.-+|.-||+|++|++...++..+.. .+.+++-+|.| +++++.....+. .+...+++.. .|..+.| ..
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did-~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL----~d 76 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDID-EERLDAILTIAKKYVEEVGADLKFEKTMNLDDVI----ID 76 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSC-HHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHH----TT
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCC-chHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcc----cC
Confidence 4578889998788654333222221 13599999999 887765443332 2333455544 4666666 35
Q ss_pred ccEEEEcCCC
Q 042616 113 ADFVLIDCNI 122 (220)
Q Consensus 113 ~D~VfiD~~k 122 (220)
.|+|++-...
T Consensus 77 ad~Vv~~~~~ 86 (171)
T d1obba1 77 ADFVINTAMV 86 (171)
T ss_dssp CSEEEECCCT
T ss_pred CCeEeeeccc
Confidence 7999987655
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=90.17 E-value=0.93 Score=35.63 Aligned_cols=80 Identities=11% Similarity=0.170 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhh---cC
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMG---DY 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~---~~ 110 (220)
..|.+|-.|.+ .| ....+|+.+.+.|.+|+.++.+ ++.++.+.+.++....++..+..|..+. +.. ..
T Consensus 9 enKvalITGas-~G-IG~a~a~~la~~Ga~V~~~~r~-~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 85 (251)
T d2c07a1 9 ENKVALVTGAG-RG-IGREIAKMLAKSVSHVICISRT-QKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH 85 (251)
T ss_dssp SSCEEEEESTT-SH-HHHHHHHHHTTTSSEEEEEESS-HHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCC-CH-HHHHHHHHHHHcCCEEEEEECC-HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 35778888852 23 4556666666668999999999 8888888887774445788888886431 111 14
Q ss_pred CCccEEEEcCCC
Q 042616 111 RGADFVLIDCNI 122 (220)
Q Consensus 111 ~~~D~VfiD~~k 122 (220)
+++|.++..+..
T Consensus 86 g~iDilvnnag~ 97 (251)
T d2c07a1 86 KNVDILVNNAGI 97 (251)
T ss_dssp SCCCEEEECCCC
T ss_pred CCceeeeecccc
Confidence 789999876644
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=90.05 E-value=0.21 Score=33.05 Aligned_cols=45 Identities=20% Similarity=0.107 Sum_probs=36.7
Q ss_pred CCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH
Q 042616 39 NNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKS 87 (220)
Q Consensus 39 ~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~ 87 (220)
.+.++||-.|. |++|..++.|++++ +.+|+++-.+ ++..+..++.
T Consensus 30 ~~~~~vlI~gasGgVG~~aiQlak~~---G~~Vi~~t~s-~~k~~~~~~l 75 (77)
T d1o8ca2 30 PQDGEIVVTGASGGVGSTAVALLHKL---GYQVVAVSGR-ESTHEYLKSL 75 (77)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHT---TCCEEEEESC-GGGHHHHHHH
T ss_pred cCCCcEEEEeCCCcHHHHHHHHHHHc---CCeEEEEECC-HHHHHHHHHC
Confidence 45677877664 78999999999885 6799999999 8999888763
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=89.94 E-value=0.91 Score=32.61 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=48.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHH-HHHHHhcccCCcEEEEEcchhh--hhhhc-CCCccEEE
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDID-ASKKSLGRYANCIEFVKGDAQK--LLMGD-YRGADFVL 117 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~-~Ar~~l~g~~~~Ve~v~gda~~--~L~~~-~~~~D~Vf 117 (220)
.+|+-+|.| -.+..+++.+...+-.++.||.| ++... .+.+.. ...+.++.||+.+ .|... .+..|.++
T Consensus 4 nHiII~G~g---~~g~~l~~~L~~~~~~v~vId~d-~~~~~~~~~~~~---~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi 76 (153)
T d1id1a_ 4 DHFIVCGHS---ILAINTILQLNQRGQNVTVISNL-PEDDIKQLEQRL---GDNADVIPGDSNDSSVLKKAGIDRCRAIL 76 (153)
T ss_dssp SCEEEECCS---HHHHHHHHHHHHTTCCEEEEECC-CHHHHHHHHHHH---CTTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred CEEEEECCC---HHHHHHHHHHHHcCCCEEEEecc-chhHHHHHHHhh---cCCcEEEEccCcchHHHHHhccccCCEEE
Confidence 468878854 44445555555557789999999 76543 233222 2458999999854 45443 36789999
Q ss_pred EcCCC
Q 042616 118 IDCNI 122 (220)
Q Consensus 118 iD~~k 122 (220)
+-.+.
T Consensus 77 ~~~~~ 81 (153)
T d1id1a_ 77 ALSDN 81 (153)
T ss_dssp ECSSC
T ss_pred Ecccc
Confidence 88765
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=89.94 E-value=0.46 Score=31.70 Aligned_cols=84 Identities=13% Similarity=0.126 Sum_probs=53.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch-hhhhhhcCCCccEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA-QKLLMGDYRGADFVL 117 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda-~~~L~~~~~~~D~Vf 117 (220)
.+.++|+-+|-|.+|.+++.++.. .+.+|+..|.. +.... +.. +...+.+..+.. .+.+ ..+|+|+
T Consensus 3 ~~~K~v~ViGlG~sG~s~a~~L~~---~g~~v~~~D~~-~~~~~--~~~---~~~~~~~~~~~~~~~~~----~~~d~vi 69 (93)
T d2jfga1 3 YQGKNVVIIGLGLTGLSCVDFFLA---RGVTPRVMDTR-MTPPG--LDK---LPEAVERHTGSLNDEWL----MAADLIV 69 (93)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHH---TTCCCEEEESS-SSCTT--GGG---SCTTSCEEESBCCHHHH----HHCSEEE
T ss_pred cCCCEEEEEeECHHHHHHHHHHHH---CCCEEEEeeCC-cCchh--HHH---Hhhccceeecccchhhh----ccCCEEE
Confidence 456889999988788877655543 37899999986 33111 111 223355555553 3333 4689999
Q ss_pred EcCCCCCccHHHHHHHHHhh
Q 042616 118 IDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~ 137 (220)
+-+.- ......++.+...
T Consensus 70 ~SPGi--~~~~~~~~~a~~~ 87 (93)
T d2jfga1 70 ASPGI--ALAHPSLSAAADA 87 (93)
T ss_dssp ECTTS--CTTSHHHHHHHHT
T ss_pred ECCCC--CCCCHHHHHHHHc
Confidence 98877 4445667777664
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.66 E-value=0.63 Score=36.82 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=55.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhh------hhhhc-
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQK------LLMGD- 109 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~------~L~~~- 109 (220)
.+.|.+|-.|++ .| ....+|+.+.+.|.+|+..+.+ ++.++.+.+.++ +...++.++..|..+ ++...
T Consensus 8 lk~Kv~lITGas-~G-IG~aiA~~la~~G~~Vv~~~r~-~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~ 84 (257)
T d1xg5a_ 8 WRDRLALVTGAS-GG-IGAAVARALVQQGLKVVGCART-VGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR 84 (257)
T ss_dssp GTTCEEEEESTT-SH-HHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC-CH-HHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 567899999852 23 3445555555558999999999 888888777665 445678888887643 12111
Q ss_pred --CCCccEEEEcCCC
Q 042616 110 --YRGADFVLIDCNI 122 (220)
Q Consensus 110 --~~~~D~VfiD~~k 122 (220)
.+.+|.++-.+..
T Consensus 85 ~~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 85 SQHSGVDICINNAGL 99 (257)
T ss_dssp HHHCCCSEEEECCCC
T ss_pred HhcCCCCEEEecccc
Confidence 4689999877654
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.59 E-value=2.1 Score=31.44 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=52.4
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEE-eCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCI-LSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCN 121 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tI-E~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~ 121 (220)
+|.-||||..|..=+......+ +.+|++| |++ ++.++...+.+. ...... +..|..+++. ...+|+|++-.+
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~--~~~i~ai~d~~-~~~~~~~~~~~~-~~~~~~-~~~~~~~ll~--~~~iD~v~I~tp 75 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAP--NATISGVASRS-LEKAKAFATANN-YPESTK-IHGSYESLLE--DPEIDALYVPLP 75 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCT--TEEEEEEECSS-HHHHHHHHHHTT-CCTTCE-EESSHHHHHH--CTTCCEEEECCC
T ss_pred EEEEEcCCHHHHHHHHHHHhCC--CCEEEEEEeCC-ccccccchhccc-ccccee-ecCcHHHhhh--ccccceeeeccc
Confidence 4666898766654232222222 5688875 888 766655444332 212222 4678888774 357999999887
Q ss_pred CCCccHHHHHHHHHhh
Q 042616 122 IDIDGHKNVFRAAKES 137 (220)
Q Consensus 122 k~~~~y~~~l~~l~~~ 137 (220)
. ....++...+.+.
T Consensus 76 ~--~~h~~~~~~~l~~ 89 (184)
T d1ydwa1 76 T--SLHVEWAIKAAEK 89 (184)
T ss_dssp G--GGHHHHHHHHHTT
T ss_pred c--hhhcchhhhhhhc
Confidence 7 6666666666654
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=89.45 E-value=1.1 Score=31.29 Aligned_cols=68 Identities=12% Similarity=0.040 Sum_probs=50.0
Q ss_pred cEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 68 GRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 68 grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
++|.-||-| +...+..++.++...-.|. ...++.+.+..+ ..+||+|++|-..+..+-.+.++.+.+.
T Consensus 4 ~~ILIVDDd-~~~~~~l~~~L~~~g~~v~-~a~~~~~a~~~l~~~~~dlii~D~~mp~~~G~el~~~l~~~ 72 (123)
T d1krwa_ 4 GIVWVVDDD-SSIRWVLERALAGAGLTCT-TFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQR 72 (123)
T ss_dssp CEEEEESSS-HHHHHHHHHHHHHTTCEEE-EESSSHHHHHHHTTCCCSEEEECCSSSSSTTHHHHHHHHHH
T ss_pred CEEEEEECC-HHHHHHHHHHHHHCCCEEE-EeCCHHHHHHHHHhCCCCEEEehhhcCCchHHHHHHHHHHh
Confidence 688899999 9999999998873222454 456666665443 3689999999887445667888888776
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=89.35 E-value=0.62 Score=36.87 Aligned_cols=80 Identities=10% Similarity=0.083 Sum_probs=54.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh------hhhhc---
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK------LLMGD--- 109 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~------~L~~~--- 109 (220)
.+.|.+|-.|.+ .| ....+|+.+...|.+|+.++.+ ++.++.+.+.++....++..+..|..+ .+...
T Consensus 3 L~gK~alITGas-~G-IG~aia~~la~~Ga~V~~~~r~-~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T d1zema1 3 FNGKVCLVTGAG-GN-IGLATALRLAEEGTAIALLDMN-REALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRD 79 (260)
T ss_dssp TTTCEEEEETTT-SH-HHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC-CH-HHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467889988852 22 2344444444458999999999 888888888777444578888887532 12111
Q ss_pred CCCccEEEEcCC
Q 042616 110 YRGADFVLIDCN 121 (220)
Q Consensus 110 ~~~~D~VfiD~~ 121 (220)
.+.+|.++..+.
T Consensus 80 ~g~iDilVnnaG 91 (260)
T d1zema1 80 FGKIDFLFNNAG 91 (260)
T ss_dssp HSCCCEEEECCC
T ss_pred hCCCCeehhhhc
Confidence 368999997754
|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.25 E-value=0.95 Score=31.45 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=49.3
Q ss_pred EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 69 RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 69 rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
||.-||-| +...+..+..++...-.|. ...++.+.+..+ ..+||+|++|-..+..+-.+.++.++..
T Consensus 3 rILiVdDd-~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~dlillD~~mp~~~g~~~~~~lr~~ 70 (122)
T d1kgsa2 3 RVLVVEDE-RDLADLITEALKKEMFTVD-VCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRES 70 (122)
T ss_dssp EEEEECSS-HHHHHHHHHHHHHTTCEEE-EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHT
T ss_pred EEEEEeCC-HHHHHHHHHHHHHCCCEEE-EEcchHHHHHHHHhhCccccccccccccchhHHHHHHHHhc
Confidence 78889999 9999999999872212344 456777666443 3789999999987555667888888765
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=89.05 E-value=4.8 Score=33.83 Aligned_cols=127 Identities=10% Similarity=0.097 Sum_probs=79.0
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+.-.|.+..|=..|++..++...+-..+| ....+..+. ++.+.+.+|++-+.-=.......+..+....-.++++..
T Consensus 54 sR~~nPT~~~le~~la~LEg~~~a~~~sSG-maAi~~~~l-~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~ 131 (394)
T d1e5ea_ 54 TRLGNPTVSNLEGKIAFLEKTEACVATSSG-MGAIAATVL-TILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINT 131 (394)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCSEEEEESSH-HHHHHHHHH-HHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred cCCCCHHHHHHHHHHHHHhCCcceeeeccc-hHHHHHHHH-hhcccccccccccceeehhhHhHHHHhhccceeeeccCC
Confidence 467889999999999999999988866543 333333333 334448888887765134445555555533234666654
Q ss_pred c-hhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 D-AQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 d-a~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+ ..++...+.+.-++||+-.+... .+.....+.+... +|.++|+||.+.
T Consensus 132 ~d~~~~~~~i~~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~-----~g~~vvvDnT~a 185 (394)
T d1e5ea_ 132 AIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQ-----EGVLVIADNTFC 185 (394)
T ss_dssp TSTTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTS-----TTCEEEEECTTT
T ss_pred CCHHHHHHhhcccccEEEEeccCCcceeeehhhhhhhccccc-----cCeEEEecCccc
Confidence 3 33433334567899999977511 2334444444433 478899999984
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=88.88 E-value=2.9 Score=29.79 Aligned_cols=73 Identities=14% Similarity=0.029 Sum_probs=44.3
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHh-c---ccCCcEEEE-EcchhhhhhhcCCCccEEE
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSL-G---RYANCIEFV-KGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l-~---g~~~~Ve~v-~gda~~~L~~~~~~~D~Vf 117 (220)
+|.-||+|.+|++-. ++.+.......++-+|.+ ++..+....-+ . .......+. .+|. +.+ ...|+|+
T Consensus 2 KI~IIGaG~VG~~la-~~l~~~~l~~el~L~Di~-~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~-~~~----~dadvvv 74 (142)
T d1guza1 2 KITVIGAGNVGATTA-FRLAEKQLARELVLLDVV-EGIPQGKALDMYESGPVGLFDTKVTGSNDY-ADT----ANSDIVI 74 (142)
T ss_dssp EEEEECCSHHHHHHH-HHHHHTTCCSEEEEECSS-SSHHHHHHHHHHTTHHHHTCCCEEEEESCG-GGG----TTCSEEE
T ss_pred EEEEECcCHHHHHHH-HHHHhCCCCceEEEeccc-cccchhhhhhhhcccchhcccceEEecCCH-HHh----cCCeEEE
Confidence 466789988888644 343444446799999999 66654333222 2 112345554 3443 333 4579999
Q ss_pred EcCCC
Q 042616 118 IDCNI 122 (220)
Q Consensus 118 iD~~k 122 (220)
+-+..
T Consensus 75 itag~ 79 (142)
T d1guza1 75 ITAGL 79 (142)
T ss_dssp ECCSC
T ss_pred EEEec
Confidence 98764
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=88.86 E-value=0.66 Score=34.37 Aligned_cols=97 Identities=8% Similarity=0.035 Sum_probs=53.1
Q ss_pred CCEEEEEcCCchHHHHH-HHHHHcCCCCcEEEEE-eCCchh--HHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccE
Q 042616 41 AQLIVMACSSIAVSRTL-ALVAAARQTGGRVVCI-LSGVIG--DIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADF 115 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl-~LA~A~~~~~grV~tI-E~d~~~--~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~ 115 (220)
.-+|--||||..|--.+ -+.+.. + ...++++ +.+ ++ ..+.|++. .+.+..+..++++... ...+|+
T Consensus 4 kirvaIIGaG~ig~~~~~~~l~~~-~-~~el~avas~~-~~~~~~~~a~~~------~i~~~~~~~d~l~~~~~~~~iDi 74 (157)
T d1nvmb1 4 KLKVAIIGSGNIGTDLMIKVLRNA-K-YLEMGAMVGID-AASDGLARAQRM------GVTTTYAGVEGLIKLPEFADIDF 74 (157)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHC-S-SEEEEEEECSC-TTCHHHHHHHHT------TCCEESSHHHHHHHSGGGGGEEE
T ss_pred CcEEEEEcCcHHHHHHHHHHHhhC-C-cceEEEEEecc-hhccchhhhhhc------CCcccccceeeeeecccccccCE
Confidence 34677789876665333 233322 2 5788887 455 43 23444442 3555555555555332 256999
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
||+-.+. +.....-..+... +-|.+|.||.-
T Consensus 75 Vf~ATpa--g~h~~~~~~~~aa-----~~G~~VID~s~ 105 (157)
T d1nvmb1 75 VFDATSA--SAHVQNEALLRQA-----KPGIRLIDLTP 105 (157)
T ss_dssp EEECSCH--HHHHHHHHHHHHH-----CTTCEEEECST
T ss_pred EEEcCCc--hhHHHhHHHHHHH-----HcCCEEEEccc
Confidence 9987765 4443333333332 35677777765
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Probab=88.62 E-value=1.2 Score=30.79 Aligned_cols=68 Identities=12% Similarity=0.019 Sum_probs=49.4
Q ss_pred cEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 68 GRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 68 grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
-||.-||-+ +...+..++.++...-.+. ...++.+.+..+ ...||+|++|-..+.-+-.+.++.+...
T Consensus 2 krILvVDD~-~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~~~~~~~dlillD~~mP~~~G~el~~~lr~~ 70 (119)
T d1peya_ 2 EKILIVDDQ-SGIRILLNEVFNKEGYQTF-QAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVI 70 (119)
T ss_dssp CEEEEECSC-HHHHHHHHHHHHHTTCEEE-EESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHH
T ss_pred CEEEEEeCC-HHHHHHHHHHHHHcCCEEE-EeCCHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHh
Confidence 488999999 9988888888872212333 456666666433 3579999999987545668888888876
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=88.53 E-value=1.2 Score=30.78 Aligned_cols=67 Identities=9% Similarity=0.042 Sum_probs=48.2
Q ss_pred EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 69 RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 69 rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
||.-||-| +...+..+..++...-.|. ...++.+.+..+ ..+||+|++|-..+..+-.+.++.+.+.
T Consensus 2 rILiVdDd-~~~~~~l~~~L~~~g~~v~-~a~~~~eal~~~~~~~~dlillD~~mp~~~G~~~~~~i~~~ 69 (117)
T d2a9pa1 2 KILIVDDE-KPISDIIKFNMTKEGYEVV-TAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKT 69 (117)
T ss_dssp EEEEECSC-HHHHHHHHHHHHHTTCEEE-EESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHTT
T ss_pred EEEEEECC-HHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHhcCCCEEEeccccCCCCccHHHHHHHhC
Confidence 68889988 9989998888873222454 456666666443 3689999999877445667788888765
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.39 E-value=2 Score=29.75 Aligned_cols=67 Identities=10% Similarity=0.040 Sum_probs=47.7
Q ss_pred EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 69 RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 69 rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
+|.-||-| +...+..+..++...-.|. ...++.+.+..+ ..+||+|++|-.....+-.+.++.+...
T Consensus 4 ~ILiVDDd-~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~dlii~D~~mp~~~G~~~~~~~r~~ 71 (121)
T d1xhfa1 4 HILIVEDE-LVTRNTLKSIFEAEGYDVF-EATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQ 71 (121)
T ss_dssp EEEEECSC-HHHHHHHHHHHHTTTCEEE-EESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHH
T ss_pred EEEEEECC-HHHHHHHHHHHHHCCCEEE-EECChHHHHHHHHhcCCCEEEeecccCCccCcHHHHHHHhc
Confidence 88899999 9988888888873212343 445666665433 3689999999887444556777777765
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.10 E-value=4 Score=30.51 Aligned_cols=104 Identities=15% Similarity=0.069 Sum_probs=56.9
Q ss_pred EEEEEcCCchHHHHHH-HHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-------------ccCCcEEEEEcchhhhhhh
Q 042616 43 LIVMACSSIAVSRTLA-LVAAARQTGGRVVCILSGVIGDIDASKKSLG-------------RYANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~-LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-------------g~~~~Ve~v~gda~~~L~~ 108 (220)
+|--||+|.+|..+.. ||. .+-+|+++|.| ++.++...+... .....--....|..+.+.
T Consensus 2 kI~ViGlG~vGl~~a~~la~----~g~~V~g~D~n-~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~- 75 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSA----RGHEVIGVDVS-STKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL- 75 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHH----TTCEEEEECSC-HHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH-
T ss_pred EEEEECCCHhHHHHHHHHHh----CCCcEEEEeCC-HHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHh-
Confidence 5777898777754333 332 26799999999 887765443211 011111233344455442
Q ss_pred cCCCccEEEEcCCCC--------CccHHHHHHHHHhhcC-CCCCCEEEEEecCCCCC
Q 042616 109 DYRGADFVLIDCNID--------IDGHKNVFRAAKESVM-HGSGAGVIVGYNALPKG 156 (220)
Q Consensus 109 ~~~~~D~VfiD~~k~--------~~~y~~~l~~l~~~~~-L~~~Ggviv~dNv~~~g 156 (220)
..|++|+--+.+ ........+.+..... + .++.+||.-....+|
T Consensus 76 ---~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~-~~~~liii~STv~pG 128 (202)
T d1mv8a2 76 ---DSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREK-SERHTVVVRSTVLPG 128 (202)
T ss_dssp ---TCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTC-CSCCEEEECSCCCTT
T ss_pred ---hCCEEEEecCccccccccccchhhhhhhhhhhheeecc-cCCcceeeccccCCc
Confidence 358888765431 0112344444433210 2 358899998888877
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.03 E-value=0.48 Score=32.77 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=30.2
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchh
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIG 79 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~ 79 (220)
|.....|++|+-||. |+.++-+|..+...|.+|+-||.. +.
T Consensus 16 l~~~~~p~~v~IiGg---G~ig~E~A~~l~~~G~~Vtlve~~-~~ 56 (117)
T d1ebda2 16 LNLGEVPKSLVVIGG---GYIGIELGTAYANFGTKVTILEGA-GE 56 (117)
T ss_dssp HTCSSCCSEEEEECC---SHHHHHHHHHHHHTTCEEEEEESS-SS
T ss_pred hChhhcCCeEEEECC---CccceeeeeeecccccEEEEEEec-ce
Confidence 334556899999994 566666666666668899999987 54
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=88.01 E-value=0.63 Score=35.95 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=35.0
Q ss_pred CChhHHHHHHHHH----hhCCCCEEEEEcCCchHHHHHH-HHHHcCCCCcEEEEEeCC
Q 042616 24 KEPDVGEFISALA----AGNNAQLIVMACSSIAVSRTLA-LVAAARQTGGRVVCILSG 76 (220)
Q Consensus 24 ~~p~~~~~L~~La----~~~~a~~ILEIGtg~~G~sTl~-LA~A~~~~~grV~tIE~d 76 (220)
.+|+.-++|...- ...+|++|+-||+|.+|.++.+ |+++ |-+|+-+|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~pkkV~IIGaG~aGLsaA~~L~~~----G~~V~vlE~~ 62 (370)
T d2iida1 9 QENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGA----GHQVTVLEAS 62 (370)
T ss_dssp CCTTHHHHHHHHHHCSCCCSSCCEEEEECCBHHHHHHHHHHHHH----TCEEEEECSS
T ss_pred CCccHHHHHHHHhcCCCCCCCCCeEEEECCCHHHHHHHHHHHHC----CCCEEEEeCC
Confidence 4566666665442 3567899999999988888887 4443 5578888876
|
| >d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulatory protein StyR, N-terminal domain species: Pseudomonas fluorescens [TaxId: 294]
Probab=87.86 E-value=1.9 Score=30.01 Aligned_cols=67 Identities=9% Similarity=-0.011 Sum_probs=50.5
Q ss_pred EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 69 RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 69 rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
+|.-||-| +...+..+..++...-.|. ...++.+.+..+ ..+||+|++|-.....+-.+.++.+...
T Consensus 4 ~ILiVDDd-~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~~~~~~~dliilD~~mp~~~G~~~~~~i~~~ 71 (128)
T d1yioa2 4 TVFVVDDD-MSVREGLRNLLRSAGFEVE-TFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAI 71 (128)
T ss_dssp EEEEECSC-HHHHHHHHHHHHTTTCEEE-EESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHT
T ss_pred EEEEEECC-HHHHHHHHHHHHHcCCCcc-ccccHHHHHHHHHhcCCCEeehhhhcccchhHHHHHHHHhh
Confidence 88999999 9999999999873322343 445777777554 3689999999987445667888888876
|
| >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: TorCAD operon transcriptional regulator TorD, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.73 E-value=2 Score=29.46 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=48.0
Q ss_pred cEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 68 GRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 68 grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
.||.-||-| +...+..+..++...-.|. ...++.+.+..+ ...||+|++|-..+..+-.+.++.+...
T Consensus 2 ~rILiVDDd-~~~~~~l~~~L~~~g~~v~-~a~~~~~a~~~~~~~~~dliilD~~mp~~~g~~~~~~~~~~ 70 (120)
T d1zgza1 2 HHIVIVEDE-PVTQARLQSYFTQEGYTVS-VTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRER 70 (120)
T ss_dssp CEEEEECSS-HHHHHHHHHHHHHTTCEEE-EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTT
T ss_pred CEEEEEeCC-HHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHhcCCCEEeeehhhccchhHHHHHHHhcc
Confidence 378899999 9999999998873222344 455666655433 3689999999988445666777776654
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.67 E-value=0.49 Score=35.66 Aligned_cols=89 Identities=19% Similarity=0.206 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hhhcCCCccEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LMGDYRGADFVL 117 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~~~~~D~Vf 117 (220)
.-++|+-+|+ +|+.+-+++..+-..+-+|+++..+ ++.+. .....+++++.+|..+. +.+.....|.||
T Consensus 2 ~~kkIlV~Ga--tG~iG~~v~~~Ll~~g~~V~~~~R~-~~~~~------~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi 72 (205)
T d1hdoa_ 2 AVKKIAIFGA--TGQTGLTTLAQAVQAGYEVTVLVRD-SSRLP------SEGPRPAHVVVGDVLQAADVDKTVAGQDAVI 72 (205)
T ss_dssp CCCEEEEEST--TSHHHHHHHHHHHHTTCEEEEEESC-GGGSC------SSSCCCSEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECC--CCHHHHHHHHHHHHCcCEEEEEEcC-hhhcc------cccccccccccccccchhhHHHHhcCCCEEE
Confidence 4578999983 5666666555444447789999999 76531 12235689999998653 222245689888
Q ss_pred EcCCCCC---------ccHHHHHHHHHhh
Q 042616 118 IDCNIDI---------DGHKNVFRAAKES 137 (220)
Q Consensus 118 iD~~k~~---------~~y~~~l~~l~~~ 137 (220)
.-..... ....++++.+.+.
T Consensus 73 ~~~g~~~~~~~~~~~~~~~~~l~~aa~~~ 101 (205)
T d1hdoa_ 73 VLLGTRNDLSPTTVMSEGARNIVAAMKAH 101 (205)
T ss_dssp ECCCCTTCCSCCCHHHHHHHHHHHHHHHH
T ss_pred EEeccCCchhhhhhhHHHHHHHHHHHHhc
Confidence 6432210 1124567777776
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=87.65 E-value=1.4 Score=30.38 Aligned_cols=67 Identities=12% Similarity=0.052 Sum_probs=48.4
Q ss_pred EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 69 RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 69 rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
||.-||-| +...+..+..++...-.|. ...++.+.+..+ ...||+|++|-..+..+-.+.++.+...
T Consensus 2 rILvVDDd-~~~~~~l~~~L~~~G~~v~-~a~~g~eal~~l~~~~~dliilD~~mP~~~G~e~~~~i~~~ 69 (119)
T d2pl1a1 2 RVLVVEDN-ALLRHHLKVQIQDAGHQVD-DAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSN 69 (119)
T ss_dssp EEEEECSC-HHHHHHHHHHHHHTTCEEE-EESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHT
T ss_pred EEEEEeCC-HHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHhcccceeehhccCCCchhHHHHHHHHhc
Confidence 67789999 9999999998873222343 456666655433 3689999999987445667888888776
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=87.63 E-value=0.88 Score=34.48 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=54.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH---h---c--ccCCcEEEEEcchhhhhhhcCCCc
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKS---L---G--RYANCIEFVKGDAQKLLMGDYRGA 113 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~---l---~--g~~~~Ve~v~gda~~~L~~~~~~~ 113 (220)
++|.-||+| .++.+||..+.+.+-.|+...+| ++.++...+. . . .+.++++ ...|..+.+ ...
T Consensus 8 ~KI~ViGaG---~wGtAlA~~La~~g~~V~l~~r~-~~~~~~i~~~~~n~~yl~~~~l~~~i~-~t~~l~~a~----~~a 78 (189)
T d1n1ea2 8 NKAVVFGSG---AFGTALAMVLSKKCREVCVWHMN-EEEVRLVNEKRENVLFLKGVQLASNIT-FTSDVEKAY----NGA 78 (189)
T ss_dssp EEEEEECCS---HHHHHHHHHHHTTEEEEEEECSC-HHHHHHHHHHTBCTTTSTTCBCCTTEE-EESCHHHHH----TTC
T ss_pred ceEEEECCC---HHHHHHHHHHHHcCCeEEEEEec-HHHHHHHhhcccccccccccccccccc-cchhhhhcc----CCC
Confidence 579999965 44455666666645578888999 8777655432 1 1 2345676 456767766 346
Q ss_pred cEEEEcCCCCCccHHHHHHHHHh
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKE 136 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~ 136 (220)
|+||+--+. ....++++.+.+
T Consensus 79 d~iiiavPs--~~~~~~~~~~~~ 99 (189)
T d1n1ea2 79 EIILFVIPT--QFLRGFFEKSGG 99 (189)
T ss_dssp SCEEECSCH--HHHHHHHHHHCH
T ss_pred CEEEEcCcH--HHHHHHHHHHHh
Confidence 999998776 555677777654
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=87.49 E-value=1.1 Score=32.62 Aligned_cols=82 Identities=15% Similarity=0.049 Sum_probs=52.3
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCC-CcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQT-GGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCN 121 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~-~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~ 121 (220)
+|.-||+|..|... + +.++... +-.++.+|.+ ++..+...+.+. +..+..|.++++. ..+|+|+|-.+
T Consensus 3 rvgiiG~G~~~~~~-~-~~~l~~~~~~~~~~~d~~-~~~~~~~~~~~~-----~~~~~~~~~~ll~---~~iD~V~I~tp 71 (167)
T d1xeaa1 3 KIAMIGLGDIAQKA-Y-LPVLAQWPDIELVLCTRN-PKVLGTLATRYR-----VSATCTDYRDVLQ---YGVDAVMIHAA 71 (167)
T ss_dssp EEEEECCCHHHHHT-H-HHHHTTSTTEEEEEECSC-HHHHHHHHHHTT-----CCCCCSSTTGGGG---GCCSEEEECSC
T ss_pred EEEEEcCCHHHHHH-H-HHHHHhCCCcEEEEEECC-HHHHHHHHHhcc-----cccccccHHHhcc---cccceeccccc
Confidence 57778987444321 2 2233322 4567788999 877776665543 1112356677663 36899999888
Q ss_pred CCCccHHHHHHHHHhh
Q 042616 122 IDIDGHKNVFRAAKES 137 (220)
Q Consensus 122 k~~~~y~~~l~~l~~~ 137 (220)
. ....++...+.+.
T Consensus 72 ~--~~H~~~~~~al~~ 85 (167)
T d1xeaa1 72 T--DVHSTLAAFFLHL 85 (167)
T ss_dssp G--GGHHHHHHHHHHT
T ss_pred c--ccccccccccccc
Confidence 7 7788887777776
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=87.48 E-value=0.97 Score=35.65 Aligned_cols=80 Identities=6% Similarity=-0.009 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhhc---C
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMGD---Y 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~~---~ 110 (220)
+.|.+|-.|. ++-....+|..+.+.|.+|+.++.+ ++.++.+.+.++....++.++..|..+. +... .
T Consensus 10 ~gK~alITGa--s~GIG~aia~~la~~Ga~V~~~~r~-~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~ 86 (255)
T d1fmca_ 10 DGKCAIITGA--GAGIGKEIAITFATAGASVVVSDIN-ADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TTCEEEETTT--TSHHHHHHHHHHHTTTCEEEEEESC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC--CcHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5688898875 2223444555555558999999999 8888888777764445788888886431 1111 3
Q ss_pred CCccEEEEcCCC
Q 042616 111 RGADFVLIDCNI 122 (220)
Q Consensus 111 ~~~D~VfiD~~k 122 (220)
+++|+++..+..
T Consensus 87 g~iDilvnnAG~ 98 (255)
T d1fmca_ 87 GKVDILVNNAGG 98 (255)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEeeeCCcC
Confidence 689999876543
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=87.43 E-value=1.5 Score=30.02 Aligned_cols=85 Identities=12% Similarity=0.052 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
..++||-+|+|-+|..-+ +.+...+.+|+-++++ .... .+...+ ..++++......+.. ...+|+|++.
T Consensus 11 ~~k~vlVvG~G~va~~ka---~~ll~~ga~v~v~~~~-~~~~--~~~~~~--~~~i~~~~~~~~~~d---l~~~~lv~~a 79 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKA---RLLLEAGARLTVNALT-FIPQ--FTVWAN--EGMLTLVEGPFDETL---LDSCWLAIAA 79 (113)
T ss_dssp BTCEEEEECCSHHHHHHH---HHHHHTTBEEEEEESS-CCHH--HHHHHT--TTSCEEEESSCCGGG---GTTCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHH---HHHHHCCCeEEEEecc-CChH--HHHHHh--cCCceeeccCCCHHH---hCCCcEEeec
Confidence 468999999765555444 3333447888887776 4321 111111 146788877665422 3578999988
Q ss_pred CCCCCccH-HHHHHHHHhh
Q 042616 120 CNIDIDGH-KNVFRAAKES 137 (220)
Q Consensus 120 ~~k~~~~y-~~~l~~l~~~ 137 (220)
.+. ... .++.+.+++.
T Consensus 80 t~d--~~~n~~i~~~a~~~ 96 (113)
T d1pjqa1 80 TDD--DTVNQRVSDAAESR 96 (113)
T ss_dssp CSC--HHHHHHHHHHHHHT
T ss_pred CCC--HHHHHHHHHHHHHc
Confidence 776 444 4555666654
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=87.34 E-value=0.49 Score=36.40 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=35.0
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG 89 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~ 89 (220)
..+...|||-=+| +|.++++ |. .++-+-+++|.+ ++.++.|++.++
T Consensus 210 s~~gd~VlDpF~G-SGTT~~a-a~---~~~R~~ig~El~-~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 210 SNPNDLVLDCFMG-SGTTAIV-AK---KLGRNFIGCDMN-AEYVNQANFVLN 255 (256)
T ss_dssp CCTTCEEEESSCT-TCHHHHH-HH---HTTCEEEEEESC-HHHHHHHHHHHH
T ss_pred CCCCCEEEECCCC-chHHHHH-HH---HcCCeEEEEeCC-HHHHHHHHHHHc
Confidence 3567899998765 7765542 22 247799999999 999999998763
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=87.28 E-value=4.8 Score=34.28 Aligned_cols=148 Identities=17% Similarity=0.157 Sum_probs=89.1
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK 99 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~ 99 (220)
..+.-.|..-.|=..|+...++...+-..+| ....+..+..-++ .|.+|++.+.--.......+..+....-.++++.
T Consensus 52 YsR~~nPT~~~LE~~la~LE~~~~a~~~~SG-maAi~~~~~~l~~-~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d 129 (421)
T d2ctza1 52 YSRIMNPTVDVLEKRLAALEGGKAALATASG-HAAQFLALTTLAQ-AGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTS 129 (421)
T ss_dssp CBTTBCHHHHHHHHHHHHHHTCSEEEEESSH-HHHHHHHHHHHCC-TTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECC
T ss_pred ecCCCCHHHHHHHHHHHHHhCCCeEEEecCh-HHHHHHHHHhhcc-cccceeecCCcCCchhHHHHHHHhhccccceecc
Confidence 4577889999999999999999888866543 3333333333344 4889988766523334455555443322355554
Q ss_pred c-chhhhhhh-cCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCccceEEEeeecCCcEE
Q 042616 100 G-DAQKLLMG-DYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWRGYKTHFLPIGEGLL 173 (220)
Q Consensus 100 g-da~~~L~~-~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~~~~~~s~~lPig~Gl~ 173 (220)
. +..+.... ..+...+||+-.+... .+...+-+.+.++ |.++|+||.+.... -..-|+--|..
T Consensus 130 ~~~~~~~~~~~~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~------g~~~vvDnT~a~tP-----~~~~Pl~~GaD 198 (421)
T d2ctza1 130 REERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREK------GVALIVDNTFGMGG-----YLLRPLAWGAA 198 (421)
T ss_dssp TTCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECGGGGGG-----TSCCGGGGTCS
T ss_pred cccCcchhccccCCCceEEEEcCCCcceeEecchHHHHHHHHhc------CCceEecccccccc-----eeccccccCCc
Confidence 3 22222222 2467899999987622 3555555555543 99999999985211 11236667777
Q ss_pred EEEEeec
Q 042616 174 VTRIGEN 180 (220)
Q Consensus 174 v~~~~~~ 180 (220)
|..-..|
T Consensus 199 iVvhS~T 205 (421)
T d2ctza1 199 LVTHSLT 205 (421)
T ss_dssp EEEEETT
T ss_pred EEEEech
Confidence 7666653
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.23 E-value=0.12 Score=39.53 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=21.5
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCC
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSG 76 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d 76 (220)
||+|-||+. ||.++...+.+|.-||.|
T Consensus 12 GGvGKTtia~nLA~~la~~g~~VlliD~D 40 (237)
T d1g3qa_ 12 GGTGKTTVTANLSVALGDRGRKVLAVDGD 40 (237)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 568888875 777777767799999987
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.16 E-value=0.3 Score=39.41 Aligned_cols=102 Identities=10% Similarity=0.043 Sum_probs=64.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcC--CCccEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDY--RGADFVL 117 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~--~~~D~Vf 117 (220)
|-+|+|+-|| +|-.++.|-.|-- ..+ |.++|.| +.+.+.-+.|+. ..+++++|..++.+... ..+|+++
T Consensus 2 p~kv~~lF~G-~Gg~~~gl~~aG~--~~~~~~a~E~~-~~a~~~~~~n~~----~~~~~~~di~~~~~~~~~~~~~Dll~ 73 (343)
T d1g55a_ 2 PLRVLELYSG-VGGMHHALRESCI--PAQVVAAIDVN-TVANEVYKYNFP----HTQLLAKTIEGITLEEFDRLSFDMIL 73 (343)
T ss_dssp CEEEEEETCT-TCHHHHHHHHHTC--SEEEEEEECCC-HHHHHHHHHHCT----TSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred CCEEEEcCcC-ccHHHHHHHHcCC--CCeEEEEEECC-HHHHHHHHHHCC----CCCcccCchhhCCHhHcCCCCccEEE
Confidence 5679999986 7878887766521 123 6799999 888888887763 34566677665433211 3688887
Q ss_pred EcCCC---------------CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 118 IDCNI---------------DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 118 iD~~k---------------~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
-..+= +...+..+++.+.... .+| -+++..||-
T Consensus 74 ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~-~kP--k~~i~ENV~ 121 (343)
T d1g55a_ 74 MSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQ-KLP--KYILLENVK 121 (343)
T ss_dssp ECCC------------------CHHHHHHHHGGGCS-SCC--SEEEEEEET
T ss_pred eecccccccccccccccccccccccchhhhhHhhhc-CCC--ceeeeeccC
Confidence 44331 1134456666665420 135 478889997
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=87.13 E-value=4.1 Score=29.62 Aligned_cols=110 Identities=12% Similarity=0.040 Sum_probs=62.1
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEE-Ecchhhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFV-KGDAQKLLMG 108 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v-~gda~~~L~~ 108 (220)
++........+.++||-||+|.+|...+....... ..+++-+-.+ .++++...+.+.+ +.+ ..+..+.+
T Consensus 13 ~la~~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g--~~~i~v~nRt-~~ka~~l~~~~~~-----~~~~~~~~~~~l-- 82 (159)
T d1gpja2 13 ELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRG--VRAVLVANRT-YERAVELARDLGG-----EAVRFDELVDHL-- 82 (159)
T ss_dssp HHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHC--CSEEEEECSS-HHHHHHHHHHHTC-----EECCGGGHHHHH--
T ss_pred HHHHHHhCCcccCeEEEECCCHHHHHHHHHHHhcC--CcEEEEEcCc-HHHHHHHHHhhhc-----ccccchhHHHHh--
Confidence 44555545567899999999877765554333221 2578888888 6665544444421 111 12333333
Q ss_pred cCCCccEEEEcCCCCCccH---HHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 109 DYRGADFVLIDCNIDIDGH---KNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 109 ~~~~~D~VfiD~~k~~~~y---~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
..+|+||.-..- ..| .+.++..... -.....++++|=..++
T Consensus 83 --~~~Divi~atss--~~~ii~~~~i~~~~~~--r~~~~~~~iiDlavPr 126 (159)
T d1gpja2 83 --ARSDVVVSATAA--PHPVIHVDDVREALRK--RDRRSPILIIDIANPR 126 (159)
T ss_dssp --HTCSEEEECCSS--SSCCBCHHHHHHHHHH--CSSCCCEEEEECCSSC
T ss_pred --ccCCEEEEecCC--CCccccHhhhHHHHHh--cccCCCeEEEeecCCC
Confidence 479999987655 332 5556555543 1123457888844443
|
| >d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein DctD, receiver domain species: Sinorhizobium meliloti [TaxId: 382]
Probab=87.00 E-value=2.3 Score=30.19 Aligned_cols=67 Identities=18% Similarity=0.035 Sum_probs=49.7
Q ss_pred EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 69 RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 69 rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
+|.-||-| +...+..+..++...-.+. ...++.+.+..+ ...+|+|++|-..+.-+-.+.++.+...
T Consensus 2 ~ILiVDDd-~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~dlil~D~~mP~~~G~el~~~lr~~ 69 (140)
T d1qkka_ 2 SVFLIDDD-RDLRKAMQQTLELAGFTVS-SFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILAL 69 (140)
T ss_dssp EEEEECSC-HHHHHHHHHHHHHTTCEEE-EESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHH
T ss_pred EEEEEECC-HHHHHHHHHHHHHCCCEEE-EeCChHHHHHHHhccCcchHHHhhccCCCCHHHHHHHHHHh
Confidence 57788888 8888888888873222444 347777777554 3679999999888445668888888876
|
| >d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Hypothetical protein BH3024 species: Bacillus halodurans [TaxId: 86665]
Probab=86.97 E-value=2.2 Score=29.51 Aligned_cols=68 Identities=10% Similarity=0.075 Sum_probs=48.3
Q ss_pred cEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 68 GRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 68 grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
-||.-||-| +...+..+..++...-.|+ ...++.+.+..+ ..+||+|++|......+-.++++.++..
T Consensus 3 ~rILvVdDd-~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~dliilD~~lp~~~G~el~~~ir~~ 72 (118)
T d2b4aa1 3 FRVTLVEDE-PSHATLIQYHLNQLGAEVT-VHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQ 72 (118)
T ss_dssp CEEEEECSC-HHHHHHHHHHHHHTTCEEE-EESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTS
T ss_pred CEEEEEECC-HHHHHHHHHHHHhcCCCeE-EECCHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 478899999 9999999999873222344 344555555333 2479999999988445668888888765
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=86.95 E-value=2.7 Score=31.07 Aligned_cols=79 Identities=11% Similarity=-0.023 Sum_probs=44.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----ccCCcEEEEEc-chhhhhhhcCCCcc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RYANCIEFVKG-DAQKLLMGDYRGAD 114 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~~~~Ve~v~g-da~~~L~~~~~~~D 114 (220)
+.++||-||+|+++-+.++.... ....+++-+..+ ++.++.+...++ .....++...- +..+ ++.....+|
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~--~g~~~i~i~nR~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d 92 (182)
T d1vi2a1 17 KGKTMVLLGAGGASTAIGAQGAI--EGLKEIKLFNRR-DEFFDKALAFAQRVNENTDCVVTVTDLADQQA-FAEALASAD 92 (182)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEECS-STTHHHHHHHHHHHHHHSSCEEEEEETTCHHH-HHHHHHTCS
T ss_pred CCCEEEEECCcHHHHHHHHHHhh--cCCceEeeeccc-hHHHHHHHHHHHHHHhhcCcceEeeecccccc-hhhhhcccc
Confidence 35799999998666554432222 213578888998 887776655443 22233444332 2222 222235678
Q ss_pred EEEEcCCC
Q 042616 115 FVLIDCNI 122 (220)
Q Consensus 115 ~VfiD~~k 122 (220)
+|+--.+.
T Consensus 93 iiIN~Tp~ 100 (182)
T d1vi2a1 93 ILTNGTKV 100 (182)
T ss_dssp EEEECSST
T ss_pred eeccccCC
Confidence 88866554
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=86.80 E-value=1.6 Score=30.95 Aligned_cols=65 Identities=14% Similarity=0.007 Sum_probs=48.9
Q ss_pred EEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 69 RVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 69 rV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
+|.-||-| +...+..+..++ |+ .|. ...++.+.+..+ ..+||+|++|-..+..+-.+.++.+...
T Consensus 2 kILiVDDd-~~~~~~l~~~L~~~g~--~v~-~a~~~~eAl~~l~~~~~dlvilD~~mp~~~G~e~~~~lr~~ 69 (137)
T d1ny5a1 2 NVLVIEDD-KVFRGLLEEYLSMKGI--KVE-SAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKER 69 (137)
T ss_dssp EEEEECCC-HHHHHHHHHHHHHHTC--EEE-EESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHH
T ss_pred EEEEEecC-HHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHhhccccccchHHHhhhhhhHHHHHHHHHHh
Confidence 56778999 999999999997 54 454 456776666443 3689999999877446778888888876
|
| >d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator DrrB species: Thermotoga maritima [TaxId: 2336]
Probab=86.53 E-value=2.5 Score=29.11 Aligned_cols=65 Identities=11% Similarity=0.122 Sum_probs=48.9
Q ss_pred EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 69 RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 69 rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
||.-||-| +...+..+..++.. ..+. ...++.+.+.. ..+||+|++|-.-+.-+-.+.++.++..
T Consensus 4 kILiVDDd-~~~~~~l~~~L~~~-g~v~-~~~~~~~al~~-~~~~dlillD~~mP~~~G~~~~~~lr~~ 68 (120)
T d1p2fa2 4 KIAVVDDD-KNILKKVSEKLQQL-GRVK-TFLTGEDFLND-EEAFHVVVLDVMLPDYSGYEICRMIKET 68 (120)
T ss_dssp EEEEECSC-HHHHHHHHHHHTTT-EEEE-EESSHHHHHHC-CSCCSEEEEESBCSSSBHHHHHHHHHHH
T ss_pred EEEEEECC-HHHHHHHHHHHHhC-CEEE-EECCHHHHHhc-CCCCCEEEEeCcccccchhHHHHHHhhc
Confidence 78889999 88888888888732 1343 45678888753 5679999999987445667888888876
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=86.40 E-value=3.7 Score=29.41 Aligned_cols=73 Identities=12% Similarity=0.147 Sum_probs=42.6
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHH-HHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDI-DASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~-~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+|.-||+|.+|.+-..+. +.......++-+|.+ ++.+ ..+..... .....+.+..++..+ + ..-|+|++-
T Consensus 3 KI~IIGaG~VG~~~a~~l-~~~~l~~el~L~D~~-~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~-~----~~adivvit 75 (142)
T d1y6ja1 3 KVAIIGAGFVGASAAFTM-ALRQTANELVLIDVF-KEKAIGEAMDINHGLPFMGQMSLYAGDYSD-V----KDCDVIVVT 75 (142)
T ss_dssp CEEEECCSHHHHHHHHHH-HHTTCSSEEEEECCC----CCHHHHHHTTSCCCTTCEEEC--CGGG-G----TTCSEEEEC
T ss_pred eEEEECCCHHHHHHHHHH-HhcCCCCEEEEEecc-CCccceeeeeeccCcccCCCeeEeeCcHHH-h----CCCceEEEe
Confidence 577789987887655443 444446799999999 6543 23333332 222446666666444 2 356999998
Q ss_pred CCC
Q 042616 120 CNI 122 (220)
Q Consensus 120 ~~k 122 (220)
+..
T Consensus 76 ag~ 78 (142)
T d1y6ja1 76 AGA 78 (142)
T ss_dssp CCC
T ss_pred ccc
Confidence 765
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.21 E-value=3.7 Score=29.55 Aligned_cols=99 Identities=11% Similarity=-0.034 Sum_probs=55.6
Q ss_pred EEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEE--cchhhhhhhcCCCccEEEE
Q 042616 43 LIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVK--GDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 43 ~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~--gda~~~L~~~~~~~D~Vfi 118 (220)
+|.-|| +|.+|++...+. +....-..++-+|.+ +...+ |..... .......... ++-.+.+ ..-|+|++
T Consensus 2 Kv~IiGA~G~VG~~~A~~l-~~~~~~~elvLiDi~-~~~~~-a~Dl~~~~~~~~~~~~~~~~~~~~~~----~~aDivVi 74 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLL-KNSPLVSRLTLYDIA-HTPGV-AADLSHIETRATVKGYLGPEQLPDCL----KGCDVVVI 74 (144)
T ss_dssp EEEEETTTSTTHHHHHHHH-HTCTTCSEEEEEESS-SHHHH-HHHHTTSSSSCEEEEEESGGGHHHHH----TTCSEEEE
T ss_pred eEEEECCCChHHHHHHHHH-HhCCccceEEEEecc-ccchh-hHHHhhhhhhcCCCeEEcCCChHHHh----CCCCEEEE
Confidence 577799 488997665544 455546899999999 64433 333322 1112233222 3334434 45799998
Q ss_pred cCCCCC--------------ccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 119 DCNIDI--------------DGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 119 D~~k~~--------------~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
-+...+ ..+.++.+.+.+.+ |++=++++-|
T Consensus 75 tag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~---p~~iiivvtN 118 (144)
T d1mlda1 75 PAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC---PDAMICIISN 118 (144)
T ss_dssp CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC---TTSEEEECSS
T ss_pred CCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcC---CCeEEEEecC
Confidence 876411 12355666677762 6444455444
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=86.01 E-value=3.9 Score=29.16 Aligned_cols=73 Identities=14% Similarity=0.070 Sum_probs=44.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---c-cCCcEEEE-EcchhhhhhhcCCCccEE
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---R-YANCIEFV-KGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---g-~~~~Ve~v-~gda~~~L~~~~~~~D~V 116 (220)
++|--||+|.+|++... +.+... -..++.+|.+ ++..+....-+. . ....+.+. .+|..+ + ..-|+|
T Consensus 2 ~KI~IIGaG~VG~~~A~-~l~~~~-l~dl~l~D~~-~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~-~----~~advv 73 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAH-WLAAKE-LGDIVLLDIV-EGVPQGKALDLYEASPIEGFDVRVTGTNNYAD-T----ANSDVI 73 (142)
T ss_dssp CEEEEECCSHHHHHHHH-HHHHHT-CSEEEEECSS-SSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG-G----TTCSEE
T ss_pred CeEEEECCCHHHHHHHH-HHHhCC-cceEEEEeec-cccchhHHHHhhccccccCCCCEEEecCcHHH-h----cCCCEE
Confidence 46778999988875444 344444 3589999999 665544333232 1 12344554 456554 2 346999
Q ss_pred EEcCCC
Q 042616 117 LIDCNI 122 (220)
Q Consensus 117 fiD~~k 122 (220)
++-+..
T Consensus 74 vitag~ 79 (142)
T d1uxja1 74 VVTSGA 79 (142)
T ss_dssp EECCSC
T ss_pred EEeeec
Confidence 998865
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.92 E-value=1.2 Score=34.87 Aligned_cols=80 Identities=13% Similarity=0.128 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-c-cCCcEEEEEcchhhh------hhhc--
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-R-YANCIEFVKGDAQKL------LMGD-- 109 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g-~~~~Ve~v~gda~~~------L~~~-- 109 (220)
+.|.+|-.|++ .| ....+|..+.+.|.+|+.++.+ ++.++.+.+.+. . ...++.++..|..+. +...
T Consensus 2 ~GKvalITGas-~G-IG~aia~~la~~Ga~V~i~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (254)
T d2gdza1 2 NGKVALVTGAA-QG-IGRAFAEALLLKGAKVALVDWN-LEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVD 78 (254)
T ss_dssp TTCEEEEETTT-SH-HHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CH-HHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 56888988852 22 2444445444448999999999 888877777664 2 235688888886431 2111
Q ss_pred -CCCccEEEEcCCC
Q 042616 110 -YRGADFVLIDCNI 122 (220)
Q Consensus 110 -~~~~D~VfiD~~k 122 (220)
.+++|.++-.+..
T Consensus 79 ~~G~iDilVnnAg~ 92 (254)
T d2gdza1 79 HFGRLDILVNNAGV 92 (254)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HcCCcCeecccccc
Confidence 3689999987765
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.90 E-value=0.94 Score=33.90 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=52.3
Q ss_pred hhHHHHHHH-HhcCC-CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHH---HHHcCCCCcEEEEEeCCchhHHH
Q 042616 8 NATKAYLQA-LKMGK-RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLAL---VAAARQTGGRVVCILSGVIGDID 82 (220)
Q Consensus 8 ~a~~aY~~~-l~~~~-~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~L---A~A~~~~~grV~tIE~d~~~~~~ 82 (220)
..+-+|+-. |+... .-..|-+.+.+..+.+ +...++...|| +|=+.+++ ...+.. +++++.+-|. ...+.
T Consensus 8 ~~~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~~--~~~~il~apTG-sGKT~~a~l~i~~~~~~-~~~vl~l~P~-~~L~~ 82 (202)
T d2p6ra3 8 ESISSYAVGILKEEGIEELFPPQAEAVEKVFS--GKNLLLAMPTA-AGKTLLAEMAMVREAIK-GGKSLYVVPL-RALAG 82 (202)
T ss_dssp HHHHHHHHHHHHCC---CCCCCCHHHHHHHTT--CSCEEEECSSH-HHHHHHHHHHHHHHHHT-TCCEEEEESS-HHHHH
T ss_pred hhhhHHHHHHHHHcCCCCCCHHHHHHHHHHHc--CCCEEEEcCCC-CchhHHHHHHHHHHhhc-cCcceeeccc-HHHHH
Confidence 345555555 44421 2355666777766654 33567777886 99987653 333334 6899999999 76666
Q ss_pred HHHHHhc---ccCCcEEEEEcc
Q 042616 83 ASKKSLG---RYANCIEFVKGD 101 (220)
Q Consensus 83 ~Ar~~l~---g~~~~Ve~v~gd 101 (220)
...+.+. +...++....++
T Consensus 83 q~~~~~~~~~~~~~~v~~~~~~ 104 (202)
T d2p6ra3 83 EKYESFKKWEKIGLRIGISTGD 104 (202)
T ss_dssp HHHHHHTTTTTTTCCEEEECSS
T ss_pred HHHHHHHHHhhccccceeeccC
Confidence 6555554 222345555544
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=85.79 E-value=2.9 Score=28.89 Aligned_cols=69 Identities=9% Similarity=-0.059 Sum_probs=50.6
Q ss_pred CcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 67 GGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 67 ~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
.-+|.-||-+ +...+..+..++...-.|+ ...++.+.+..+ ..+||+|++|-.-+..+-.+.++.++..
T Consensus 3 ~~~ILiVDDd-~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~~~~~~~dlvi~D~~mp~~~G~e~~~~lr~~ 72 (123)
T d1dbwa_ 3 DYTVHIVDDE-EPVRKSLAFMLTMNGFAVK-MHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDL 72 (123)
T ss_dssp CCEEEEEESS-HHHHHHHHHHHHHTTCEEE-EESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHT
T ss_pred CCEEEEEECC-HHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHhhcCCcEEEEeccCccccchHHHHHHHhc
Confidence 3588899999 8888888888872222454 456677766443 3679999999987446778889998875
|
| >d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Bacillus subtilis [TaxId: 1423]
Probab=85.57 E-value=1.8 Score=29.84 Aligned_cols=68 Identities=10% Similarity=0.131 Sum_probs=49.1
Q ss_pred cEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 68 GRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 68 grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
.||.-||-| +...+..+..++...-.|. ...++.+.+..+ ..+||+|++|-.-+..+-.+.++.+...
T Consensus 3 krILiVDDd-~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~dlillD~~mp~~~G~~~~~~~r~~ 71 (121)
T d1mvoa_ 3 KKILVVDDE-ESIVTLLQYNLERSGYDVI-TASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQ 71 (121)
T ss_dssp CEEEEECSC-HHHHHHHHHHHHHTTCEEE-EESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHT
T ss_pred CCEEEEECC-HHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHhcccccEEEecccccCCCCchhhhhhhcc
Confidence 589999999 9999999999973212344 456666665433 3689999999988445567777877765
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=85.57 E-value=0.63 Score=36.80 Aligned_cols=59 Identities=12% Similarity=0.069 Sum_probs=41.0
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG 89 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~ 89 (220)
.+.+..+.|-.+ ...+...|||.-+| +|.+++ .|.. .+-+-+++|.+ ++.++.|++.+.
T Consensus 235 kP~~L~~rlI~~-~s~~gdiVlDpF~G-SGTT~~-AA~~---lgR~~Ig~El~-~~y~~~a~~Rl~ 293 (320)
T d1booa_ 235 FPAKLPEFFIRM-LTEPDDLVVDIFGG-SNTTGL-VAER---ESRKWISFEMK-PEYVAASAFRFL 293 (320)
T ss_dssp CCTHHHHHHHHH-HCCTTCEEEETTCT-TCHHHH-HHHH---TTCEEEEEESC-HHHHHHHHGGGS
T ss_pred CchHHHHHhhhh-cccCCCEEEecCCC-CcHHHH-HHHH---cCCcEEEEeCC-HHHHHHHHHHHH
Confidence 333444444333 25677999999765 776544 2332 37799999999 999999998886
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=85.55 E-value=1.1 Score=36.29 Aligned_cols=80 Identities=14% Similarity=0.026 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh--hhhcCCCccE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL--LMGDYRGADF 115 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~--L~~~~~~~D~ 115 (220)
+.++||-.| + +|+.+-+|+..+-+.|-+|+++..+ ++..+..+.... .......++.+|..+. +.......|.
T Consensus 10 ~gk~VlVTG-~-sGfIGs~l~~~Ll~~G~~V~~~vR~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 86 (342)
T d1y1pa1 10 EGSLVLVTG-A-NGFVASHVVEQLLEHGYKVRGTARS-ASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG 86 (342)
T ss_dssp TTCEEEEET-T-TSHHHHHHHHHHHHTTCEEEEEESS-HHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred CcCEEEEEC-C-CCHHHHHHHHHHHHCcCEEEEEeCC-chhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchh
Confidence 468999988 3 7999999888775547799999988 777665555444 2234456677887542 2233456888
Q ss_pred EEEcCCC
Q 042616 116 VLIDCNI 122 (220)
Q Consensus 116 VfiD~~k 122 (220)
|+.-+..
T Consensus 87 v~~~a~~ 93 (342)
T d1y1pa1 87 VAHIASV 93 (342)
T ss_dssp EEECCCC
T ss_pred hhhhccc
Confidence 8855443
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=85.33 E-value=1.8 Score=33.82 Aligned_cols=79 Identities=13% Similarity=0.150 Sum_probs=52.1
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhh---cCC
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMG---DYR 111 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~---~~~ 111 (220)
.|.+|-.|.+ .| ....+|..+.+.|.+|+.++.+ ++.++.+.+.++....++.++..|..+. +.. ..+
T Consensus 2 gKValITGas-~G-IG~aia~~la~~Ga~V~i~~r~-~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGAT-SG-IGLEIARRLGKEGLRVFVCARG-EEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCS-SH-HHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCC-CH-HHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 3566777852 23 2444555554458999999999 8888888887764435788888875331 111 147
Q ss_pred CccEEEEcCCC
Q 042616 112 GADFVLIDCNI 122 (220)
Q Consensus 112 ~~D~VfiD~~k 122 (220)
++|.++-.+..
T Consensus 79 ~iDilVnnAG~ 89 (257)
T d2rhca1 79 PVDVLVNNAGR 89 (257)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEecccc
Confidence 89999876543
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=85.17 E-value=2.3 Score=29.94 Aligned_cols=68 Identities=12% Similarity=0.031 Sum_probs=49.4
Q ss_pred cEEEEEeCCchhHHHHHHHHhcccCCcEEE--EEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 68 GRVVCILSGVIGDIDASKKSLGRYANCIEF--VKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 68 grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~--v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
-+|.-||-+ +...+..++.++.. ..+.. ...++.+.+..+ ...||+|++|-..+..+-.+.++.++..
T Consensus 3 i~VLiVDD~-~~~r~~l~~~L~~~-~~~~~v~~a~~~~~al~~~~~~~~DlvllD~~mP~~~G~el~~~ir~~ 73 (138)
T d1a04a2 3 ATILLIDDH-PMLRTGVKQLISMA-PDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREK 73 (138)
T ss_dssp EEEEEECSC-HHHHHHHHHHHTTC-TTEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTTSCHHHHHHHHHHS
T ss_pred CEEEEECCC-HHHHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhh
Confidence 478889999 88888888888633 23333 356777766433 2579999999988556778899999876
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=85.14 E-value=2 Score=33.66 Aligned_cols=80 Identities=10% Similarity=0.060 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh------hhhhc---C
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK------LLMGD---Y 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~------~L~~~---~ 110 (220)
+.|.+|-.|.+ .| ....+|..+.+.|.+|+.++.+ ++.++.+.+.+.....++.++..|..+ ++... .
T Consensus 7 ~GK~alITGas-~G-IG~aia~~la~~Ga~V~~~~r~-~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d2ae2a_ 7 EGCTALVTGGS-RG-IGYGIVEELASLGASVYTCSRN-QKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHF 83 (259)
T ss_dssp TTCEEEEESCS-SH-HHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCC-CH-HHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 57889988852 23 2334444444448899999999 888888777776434578888887632 12111 2
Q ss_pred -CCccEEEEcCCC
Q 042616 111 -RGADFVLIDCNI 122 (220)
Q Consensus 111 -~~~D~VfiD~~k 122 (220)
.++|+++-.+..
T Consensus 84 ~~~idilvnnAG~ 96 (259)
T d2ae2a_ 84 HGKLNILVNNAGI 96 (259)
T ss_dssp TTCCCEEEECCCC
T ss_pred CCCceEEEECCce
Confidence 479999876643
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.05 E-value=5 Score=28.65 Aligned_cols=73 Identities=8% Similarity=0.037 Sum_probs=44.2
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHH-HHHHhc---ccCCcEEEEE-cchhhhhhhcCCCccEEE
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDA-SKKSLG---RYANCIEFVK-GDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~-Ar~~l~---g~~~~Ve~v~-gda~~~L~~~~~~~D~Vf 117 (220)
+|.-||+|.+|.+...+. +.......++-+|.+ +++++- |...-. .+.....+.. +|. +.+ ...|+|+
T Consensus 2 KI~IIGaG~VG~~~a~~l-~~~~~~~elvL~Di~-~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-~~~----~~adiVv 74 (142)
T d1ojua1 2 KLGFVGAGRVGSTSAFTC-LLNLDVDEIALVDIA-EDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLL----KGSEIIV 74 (142)
T ss_dssp EEEEECCSHHHHHHHHHH-HHHSCCSEEEEECSS-HHHHHHHHHHHHHHHHTTTCCCEEEEESCG-GGG----TTCSEEE
T ss_pred EEEEECcCHHHHHHHHHH-HhcCcCceEEEEecc-cchhhHHHHHHhhhccccCCCCccccCCCH-HHh----ccccEEE
Confidence 566789988887665544 333336789999999 766532 222211 2333344444 454 333 4579999
Q ss_pred EcCCC
Q 042616 118 IDCNI 122 (220)
Q Consensus 118 iD~~k 122 (220)
+.+..
T Consensus 75 itag~ 79 (142)
T d1ojua1 75 VTAGL 79 (142)
T ss_dssp ECCCC
T ss_pred Eeccc
Confidence 98864
|
| >d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Sinorhizobium meliloti, CheY2 [TaxId: 382]
Probab=85.03 E-value=1.8 Score=30.28 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=47.5
Q ss_pred cEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 68 GRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 68 grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
-||.-||-+ +...+..+..++ |+ ..|+ ...++.+.+..+ ..+||+|++|..-+..+-.+.++.++..
T Consensus 7 ~kILiVDD~-~~~~~~l~~~L~~~g~-~~v~-~a~~~~~al~~l~~~~~dlii~D~~mP~~~G~el~~~lr~~ 76 (129)
T d1p6qa_ 7 IKVLIVDDQ-VTSRLLLGDALQQLGF-KQIT-AAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRAN 76 (129)
T ss_dssp CCEEEECSS-HHHHHHHHHHHHTTTC-SCEE-CCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTC
T ss_pred CEEEEEECC-HHHHHHHHHHHHHCCC-eEEE-EECCHHHHHHHHHhCCCCeEEeeeecCCCChHHHHHHHHhC
Confidence 378889999 888888888887 44 2233 244555555333 4689999999988545667888888764
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=84.92 E-value=0.84 Score=36.04 Aligned_cols=77 Identities=13% Similarity=0.002 Sum_probs=47.1
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh--hhhhc--CCCccEEEE
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK--LLMGD--YRGADFVLI 118 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~--~L~~~--~~~~D~Vfi 118 (220)
+||-.| | +|+.+-+|++.+.+.+-+|+++|.-.+.........+... .+++++.+|..+ .+... ...+|.||-
T Consensus 2 KILVTG-a-tGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~-~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih 78 (338)
T d1orra_ 2 KLLITG-G-CGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSL-GNFEFVHGDIRNKNDVTRLITKYMPDSCFH 78 (338)
T ss_dssp EEEEET-T-TSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred EEEEEC-C-CcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhcc-CCcEEEEcccCCHHHHHHHHHhcCCceEEe
Confidence 688888 3 7888888888776557899999832022221111222222 579999999854 23222 135799986
Q ss_pred cCCC
Q 042616 119 DCNI 122 (220)
Q Consensus 119 D~~k 122 (220)
=+..
T Consensus 79 ~aa~ 82 (338)
T d1orra_ 79 LAGQ 82 (338)
T ss_dssp CCCC
T ss_pred eccc
Confidence 5543
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=84.83 E-value=0.65 Score=37.35 Aligned_cols=80 Identities=11% Similarity=0.005 Sum_probs=52.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hhhc--CCCcc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LMGD--YRGAD 114 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~--~~~~D 114 (220)
++.++||-+| | +|+.+-+|+..+-+.+-.|+.++.+ +.......+.. ...++++++.+|..+. +... ...+|
T Consensus 6 ~~~KkILVTG-~-tGfIGs~lv~~Ll~~g~~V~~~~r~-~~~~~~~~~~~-~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~ 81 (356)
T d1rkxa_ 6 WQGKRVFVTG-H-TGFKGGWLSLWLQTMGATVKGYSLT-APTVPSLFETA-RVADGMQSEIGDIRDQNKLLESIREFQPE 81 (356)
T ss_dssp HTTCEEEEET-T-TSHHHHHHHHHHHHTTCEEEEEESS-CSSSSCHHHHT-TTTTTSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred hCCCEEEEEC-C-CCHHHHHHHHHHHHCCCEEEEEECC-CCccHHHHhhh-hcccCCeEEEeeccChHhhhhhhhhchhh
Confidence 4679999998 3 7888888888887767889999988 43222111111 2236799999997432 2222 24578
Q ss_pred EEEEcCCC
Q 042616 115 FVLIDCNI 122 (220)
Q Consensus 115 ~VfiD~~k 122 (220)
+|+.-+..
T Consensus 82 ~v~~~aa~ 89 (356)
T d1rkxa_ 82 IVFHMAAQ 89 (356)
T ss_dssp EEEECCSC
T ss_pred hhhhhhcc
Confidence 88876654
|
| >d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein PrrA, N-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.73 E-value=2.4 Score=29.26 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=48.3
Q ss_pred EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 69 RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 69 rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
||.-||-| +...+..+..++...-.|. ...++.+.+..+ ...||+|++|-..+..+-.+.++.++..
T Consensus 3 kILiVDD~-~~~~~~l~~~L~~~g~~v~-~a~~~~eal~~~~~~~~dlvl~D~~mP~~~G~el~~~ir~~ 70 (121)
T d1ys7a2 3 RVLVVDDD-SDVLASLERGLRLSGFEVA-TAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAM 70 (121)
T ss_dssp EEEEECSC-HHHHHHHHHHHHHTTCEEE-EESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHT
T ss_pred EEEEEECC-HHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHhCCCCEEEEEeeccCcccHHHHHHHHhc
Confidence 78889999 8888888888873212344 456666666443 3689999999877445667888888775
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.67 E-value=0.91 Score=35.26 Aligned_cols=54 Identities=11% Similarity=0.093 Sum_probs=39.2
Q ss_pred HHHHHHHh--hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc
Q 042616 30 EFISALAA--GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG 89 (220)
Q Consensus 30 ~~L~~La~--~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~ 89 (220)
+|+..++. ..+...|||--+| +|.++++-.. ++.+.+++|.+ ++..+.|++.++
T Consensus 195 ~L~~~~I~~~s~~gdiVLDpF~G-SGTT~~Aa~~----lgR~~ig~El~-~~y~~~a~~Ri~ 250 (279)
T d1eg2a_ 195 AVIERLVRALSHPGSTVLDFFAG-SGVTARVAIQ----EGRNSICTDAA-PVFKEYYQKQLT 250 (279)
T ss_dssp HHHHHHHHHHSCTTCEEEETTCT-TCHHHHHHHH----HTCEEEEEESS-THHHHHHHHHHH
T ss_pred hHHHHHHHhhcCCCCEEEecCCC-CcHHHHHHHH----hCCeEEEEeCC-HHHHHHHHHHHH
Confidence 34444444 4567899998765 7766443222 37799999999 999999999886
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.54 E-value=3.9 Score=28.47 Aligned_cols=66 Identities=11% Similarity=0.125 Sum_probs=47.2
Q ss_pred EEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc------CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 69 RVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD------YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 69 rV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~------~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
||.-||-| +...+..++.++ |+ ..|+. ..|+.+.+..+ ..+||+|++|-..+.-+-.+.++.+++.
T Consensus 3 rVLvVDD~-~~~~~~l~~~L~~~g~-~~v~~-a~~g~eAl~~l~~~~~~~~~~dlillD~~mP~~dG~el~~~ir~~ 76 (128)
T d2r25b1 3 KILVVEDN-HVNQEVIKRMLNLEGI-ENIEL-ACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRD 76 (128)
T ss_dssp CEEEECSC-HHHHHHHHHHHHHTTC-CCEEE-ESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHH
T ss_pred EEEEEeCC-HHHHHHHHHHHHHcCC-eEEEE-EcChHHHHHHHHhhhhccCCCCEEEEEeCCCCCCHHHHHHHHHHc
Confidence 67788988 888888899887 44 24554 45555554322 4689999999988445667888888765
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=84.44 E-value=1.2 Score=31.81 Aligned_cols=37 Identities=11% Similarity=-0.097 Sum_probs=28.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhH
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGD 80 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~ 80 (220)
-++|.-|| | .|...-+||..+.+.+=.|+.+|.+ +..
T Consensus 9 ~~kI~iIG-g-~G~mG~~la~~L~~~G~~V~~~d~~-~~~ 45 (152)
T d2pv7a2 9 IHKIVIVG-G-YGKLGGLFARYLRASGYPISILDRE-DWA 45 (152)
T ss_dssp CCCEEEET-T-TSHHHHHHHHHHHTTTCCEEEECTT-CGG
T ss_pred CCeEEEEc-C-CCHHHHHHHHHHHHcCCCcEecccc-ccc
Confidence 46899999 3 5677778888887766788999998 543
|
| >d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sensor kinase protein RcsC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.43 E-value=1.1 Score=31.64 Aligned_cols=69 Identities=13% Similarity=0.016 Sum_probs=48.8
Q ss_pred CcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 67 GGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 67 ~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
+-+|.-||-| +...+..+..++...-.|+ ...++.+.+..+ ..+||+|++|...+..+-.+.++.+...
T Consensus 8 ~~~ILiVDD~-~~~~~~l~~~L~~~g~~v~-~a~~g~ea~~~~~~~~~dlillD~~mP~~dG~el~~~ir~~ 77 (133)
T d2ayxa1 8 DMMILVVDDH-PINRRLLADQLGSLGYQCK-TANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQL 77 (133)
T ss_dssp CCEEEEEESS-HHHHHHHHHHHHHHTSEEE-EECCSHHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHH
T ss_pred CCEEEEEECC-HHHHHHHHHHHHHcCCEEE-EECcHHHHHHHHhccCceEEEEeccCCCCCHHHHHHHHHHh
Confidence 4579999999 9999998988872222454 455566555332 3689999999987444557778888776
|
| >d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Cell division response regulator DivK species: Caulobacter crescentus [TaxId: 155892]
Probab=84.25 E-value=1.4 Score=30.46 Aligned_cols=68 Identities=13% Similarity=0.035 Sum_probs=49.3
Q ss_pred cEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 68 GRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 68 grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
.||.-||-| +...+..++.++...-.|. ...++.+.+..+ ..+||+|++|-..+.-+-.+.++.+...
T Consensus 2 krILiVDD~-~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~~~~~~~dlil~D~~mp~~dG~el~~~ir~~ 70 (123)
T d1mb3a_ 2 KKVLIVEDN-ELNMKLFHDLLEAQGYETL-QTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKED 70 (123)
T ss_dssp CEEEEECSC-HHHHHHHHHHHHHTTCEEE-EESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred ceEEEEECC-HHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHhCCCCEEEEEeccCCCcHHHHHHHHHhC
Confidence 478999999 9999999999973222333 456666666433 3579999999987445678888888765
|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0A species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.15 E-value=3.9 Score=28.07 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=47.9
Q ss_pred EEEEEeCCchhHHHHHHHHhcccCCcEEEE--Ecchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 69 RVVCILSGVIGDIDASKKSLGRYANCIEFV--KGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 69 rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v--~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
||.-||-| +...+..++.++.. ...+.+ ..++.+.+..+ ...+|+||+|-..+.-+-.+.++.++..
T Consensus 3 rILivDD~-~~~~~~l~~~L~~~-~~~~~v~~a~~g~~al~~~~~~~~dlillD~~mP~~dG~e~~~~ir~~ 72 (123)
T d1dz3a_ 3 KVCIADDN-RELVSLLDEYISSQ-PDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAG 72 (123)
T ss_dssp EEEEECSC-HHHHHHHHHHHHTS-TTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHH
T ss_pred EEEEEeCC-HHHHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHhc
Confidence 67778888 88888888888632 224433 45666666433 2579999999988444668889998875
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=84.07 E-value=1.4 Score=34.64 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHh-cccCCcEEEEEcchhhh------hhh---c
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSL-GRYANCIEFVKGDAQKL------LMG---D 109 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l-~g~~~~Ve~v~gda~~~------L~~---~ 109 (220)
+.|.+|-.|.+ .| ....+|+.+.+.|.+|+.++.+ ++.++.+.+.+ +....++..+..|..+. +.. .
T Consensus 8 ~gK~alITGas-~G-IG~aia~~la~~Ga~V~i~~r~-~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (260)
T d1h5qa_ 8 VNKTIIVTGGN-RG-IGLAFTRAVAAAGANVAVIYRS-AADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD 84 (260)
T ss_dssp TTEEEEEETTT-SH-HHHHHHHHHHHTTEEEEEEESS-CTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CH-HHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 46888988852 22 2344444444448899999999 66665554444 33446788888886431 111 1
Q ss_pred CCCccEEEEcCCC
Q 042616 110 YRGADFVLIDCNI 122 (220)
Q Consensus 110 ~~~~D~VfiD~~k 122 (220)
.+++|.++..+..
T Consensus 85 ~g~iDilVnnAg~ 97 (260)
T d1h5qa_ 85 LGPISGLIANAGV 97 (260)
T ss_dssp SCSEEEEEECCCC
T ss_pred hCCCcEecccccc
Confidence 4789999876643
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=84.07 E-value=2 Score=33.76 Aligned_cols=79 Identities=9% Similarity=0.081 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhh------hhhhc--
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQK------LLMGD-- 109 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~------~L~~~-- 109 (220)
+.|.+|-.|.+ .| ....+|..+.+.|.+|+.++.+ ++.++.+.+.+. +...++..+..|..+ ++...
T Consensus 3 ~gK~alITGas-~G-IG~aia~~la~~Ga~V~i~~r~-~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 79 (258)
T d1iy8a_ 3 TDRVVLITGGG-SG-LGRATAVRLAAEGAKLSLVDVS-SEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE 79 (258)
T ss_dssp TTCEEEEETTT-SH-HHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CH-HHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence 56888888852 23 2333444443448999999999 888887777664 444578888887533 11111
Q ss_pred -CCCccEEEEcCC
Q 042616 110 -YRGADFVLIDCN 121 (220)
Q Consensus 110 -~~~~D~VfiD~~ 121 (220)
.+++|.++-.+.
T Consensus 80 ~~G~iDiLVnnAG 92 (258)
T d1iy8a_ 80 RFGRIDGFFNNAG 92 (258)
T ss_dssp HHSCCSEEEECCC
T ss_pred HhCCCCEEEECCc
Confidence 368999987654
|
| >d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Escherichia coli [TaxId: 562]
Probab=83.92 E-value=3.7 Score=28.10 Aligned_cols=67 Identities=10% Similarity=-0.026 Sum_probs=48.4
Q ss_pred EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 69 RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 69 rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
||.-||-| +...+..+..++...-.|. ...++.+.+..+ ..+||+|++|-..+..+-.+.++.+...
T Consensus 2 kILiVDD~-~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~dlil~D~~mp~~~G~~l~~~lr~~ 69 (121)
T d1zesa1 2 RILVVEDE-APIREMVCFVLEQNGFQPV-EAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRE 69 (121)
T ss_dssp EEEEECSC-HHHHHHHHHHHHHTTCEEE-EECSHHHHHHHSSSSCCSEEEECSSCTTSCHHHHHHHHHHS
T ss_pred EEEEEeCC-HHHHHHHHHHHHHCCCEEE-EECChHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHhC
Confidence 67889999 9988888888873212233 455777776544 4679999999877445668888888764
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.87 E-value=1.2 Score=35.46 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--cc-CCcEEEEEcchhhh------hhhc-
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RY-ANCIEFVKGDAQKL------LMGD- 109 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~-~~~Ve~v~gda~~~------L~~~- 109 (220)
+.|.+|-.|.+ .| ....+|..+.+.|.+|+.++.+ ++.++.+.+.+. +. ..++..+..|..+. +...
T Consensus 3 ~gK~alITGas-~G-IG~aia~~la~~Ga~V~~~~r~-~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (274)
T d1xhla_ 3 SGKSVIITGSS-NG-IGRSAAVIFAKEGAQVTITGRN-EDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL 79 (274)
T ss_dssp TTCEEEETTCS-SH-HHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cH-HHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHH
Confidence 56888888852 23 2344444444448899999999 888888887775 33 35789999885331 2111
Q ss_pred --CCCccEEEEcCC
Q 042616 110 --YRGADFVLIDCN 121 (220)
Q Consensus 110 --~~~~D~VfiD~~ 121 (220)
.+.+|.++..+.
T Consensus 80 ~~~G~iDilVnnAG 93 (274)
T d1xhla_ 80 AKFGKIDILVNNAG 93 (274)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HHcCCceEEEeecc
Confidence 368999997754
|
| >d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Probab=83.73 E-value=2.4 Score=29.95 Aligned_cols=68 Identities=15% Similarity=0.079 Sum_probs=48.7
Q ss_pred cEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 68 GRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 68 grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
+||.-||-+ +...+..+..++...-.|. ...++.+.+..+ ...+|+|++|...+..+-.+.++.+...
T Consensus 2 arILiVDD~-~~~~~~l~~~L~~~g~~v~-~a~~~~eal~~~~~~~~dlil~D~~~p~~~G~~~~~~ir~~ 70 (139)
T d1w25a1 2 ARILVVDDI-EANVRLLEAKLTAEYYEVS-TAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDD 70 (139)
T ss_dssp CEEEEECSS-TTHHHHHHHHHHHTTCEEE-EESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred CEEEEEECC-HHHHHHHHHHHHHCCCEEE-EEccchhhhhhhhcccceeeeeeccccCCCchHHHHHhhhc
Confidence 689999999 9999999999972212343 566777766433 3579999999877434557777777764
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=83.64 E-value=2.1 Score=33.62 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=52.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhhc---
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMGD--- 109 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~~--- 109 (220)
.+.|.+|-.|.+ .| ....+|+.+.+.|.+|+-++.+ ++.++.+.+.+... +++.++..|..+. +...
T Consensus 4 L~gKvalITGas-~G-IG~aia~~la~~Ga~V~i~~r~-~~~~~~~~~~l~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (268)
T d2bgka1 4 LQDKVAIITGGA-GG-IGETTAKLFVRYGAKVVIADIA-DDHGQKVCNNIGSP-DVISFVHCDVTKDEDVRNLVDTTIAK 79 (268)
T ss_dssp TTTCEEEEESTT-SH-HHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHCCT-TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC-cH-HHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHhcCC-CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 467889988852 23 2444555544448999999999 88888777777632 4578888776431 1111
Q ss_pred CCCccEEEEcCC
Q 042616 110 YRGADFVLIDCN 121 (220)
Q Consensus 110 ~~~~D~VfiD~~ 121 (220)
.+.+|.++..+.
T Consensus 80 ~g~iD~lVnnAG 91 (268)
T d2bgka1 80 HGKLDIMFGNVG 91 (268)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCcceeccccc
Confidence 368999997664
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=83.62 E-value=3.5 Score=31.47 Aligned_cols=99 Identities=7% Similarity=-0.069 Sum_probs=57.9
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCC-CcEEEE-EeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQT-GGRVVC-ILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~-~grV~t-IE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.-+|--||||..|.. .++.++... +.+|++ +|++ ++.++...+.+ ++...-.....|..+++. ...+|+|+|
T Consensus 33 ~iriaiIG~G~~~~~--~~~~~~~~~~~~~ivav~d~~-~~~a~~~~~~~-~i~~~~~~~~~d~~ell~--~~~iD~V~I 106 (221)
T d1h6da1 33 RFGYAIVGLGKYALN--QILPGFAGCQHSRIEALVSGN-AEKAKIVAAEY-GVDPRKIYDYSNFDKIAK--DPKIDAVYI 106 (221)
T ss_dssp CEEEEEECCSHHHHH--THHHHTTTCSSEEEEEEECSC-HHHHHHHHHHT-TCCGGGEECSSSGGGGGG--CTTCCEEEE
T ss_pred CEEEEEEcCcHHHHH--HHHHHHHhCCCceEEEEecCC-HHHHHHHHHhh-ccccccccccCchhhhcc--cccceeeee
Confidence 346777898644432 233333332 567775 6888 77766555544 222111223366777764 367999999
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
-.+. ....++...+.+. |-=|+++--+
T Consensus 107 ~tp~--~~H~~~~~~al~~------gk~v~~EKPl 133 (221)
T d1h6da1 107 ILPN--SLHAEFAIRAFKA------GKHVMCEKPM 133 (221)
T ss_dssp CSCG--GGHHHHHHHHHHT------TCEEEECSSC
T ss_pred ccch--hhhhhHHHHhhhc------chhhhcCCCc
Confidence 8887 6667666666654 4445555433
|
| >d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpB [TaxId: 1188]
Probab=83.57 E-value=2.1 Score=30.77 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=47.9
Q ss_pred CcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-----------CCCccEEEEcCCCCCccHHHHHHH
Q 042616 67 GGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-----------YRGADFVLIDCNIDIDGHKNVFRA 133 (220)
Q Consensus 67 ~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-----------~~~~D~VfiD~~k~~~~y~~~l~~ 133 (220)
..+|.-||-| +...+..++.++ |+...| +...++.+.+..+ ...+|+|++|-.-+.-+-.+.++.
T Consensus 6 ~~~ILiVDD~-~~~~~~l~~~L~~~g~~~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~pdlillD~~mP~~~G~el~~~ 83 (149)
T d1k66a_ 6 TQPLLVVEDS-DEDFSTFQRLLQREGVVNPI-YRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQE 83 (149)
T ss_dssp TSCEEEECCC-HHHHHHHHHHHHHTTBCSCE-EEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHH
T ss_pred CCcEEEEECC-HHHHHHHHHHHHHcCCceEE-EEECChHHHHHHHHhhccccccccccCCCeEEccccccCCCcHHHHHH
Confidence 4679999999 999999999997 553333 2344444444221 236899999998844566788888
Q ss_pred HHhh
Q 042616 134 AKES 137 (220)
Q Consensus 134 l~~~ 137 (220)
++..
T Consensus 84 ir~~ 87 (149)
T d1k66a_ 84 IKQD 87 (149)
T ss_dssp HTTS
T ss_pred HHhc
Confidence 8654
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.46 E-value=0.67 Score=32.56 Aligned_cols=48 Identities=6% Similarity=-0.036 Sum_probs=33.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCc-------hhHHHHHHHHhc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGV-------IGDIDASKKSLG 89 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~-------~~~~~~Ar~~l~ 89 (220)
.-|++|+-||. |+.++-+|.++...+.+|+-++... ++..+..++.++
T Consensus 20 ~~pk~vvIvGg---G~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~ 74 (125)
T d3grsa2 20 ELPGRSVIVGA---GYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELE 74 (125)
T ss_dssp SCCSEEEEECC---SHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHH
T ss_pred hcCCEEEEEcC---CccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHH
Confidence 34799999994 5677777777776688999999851 344455555554
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=83.38 E-value=2.4 Score=33.04 Aligned_cols=74 Identities=12% Similarity=0.019 Sum_probs=49.0
Q ss_pred EEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhhc---CCCc
Q 042616 44 IVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMGD---YRGA 113 (220)
Q Consensus 44 ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~~---~~~~ 113 (220)
+|-.|. ++.| ..+|..+.+.|.+|+..+.+ ++.++.+.+.++....++..+..|..+. +... .+++
T Consensus 4 alITGas~GIG---~aia~~la~~Ga~V~~~~r~-~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (255)
T d1gega_ 4 ALVTGAGQGIG---KAIALRLVKDGFAVAIADYN-DATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF 79 (255)
T ss_dssp EEEETTTSHHH---HHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred EEEcCCccHHH---HHHHHHHHHCCCEEEEEECC-HHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence 466675 2244 34444444448899999999 8888888777763335788888886431 1111 4789
Q ss_pred cEEEEcCC
Q 042616 114 DFVLIDCN 121 (220)
Q Consensus 114 D~VfiD~~ 121 (220)
|.++-.+.
T Consensus 80 DilVnnAG 87 (255)
T d1gega_ 80 DVIVNNAG 87 (255)
T ss_dssp CEEEECCC
T ss_pred cEEEeccc
Confidence 99986654
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=83.35 E-value=2 Score=28.65 Aligned_cols=81 Identities=14% Similarity=0.023 Sum_probs=47.1
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
+|-=||-|++|.++|+.. +.+.|-.|+.-|..+.+..+. ++.. -+++..|.-.+.+ ...|+|+.-..-
T Consensus 3 ~ihfiGIgG~GMs~LA~~--L~~~G~~VsGSD~~~~~~t~~----L~~~--Gi~i~~gh~~~~i----~~~d~vV~SsAI 70 (89)
T d1j6ua1 3 KIHFVGIGGIGMSAVALH--EFSNGNDVYGSNIEETERTAY----LRKL--GIPIFVPHSADNW----YDPDLVIKTPAV 70 (89)
T ss_dssp EEEEETTTSHHHHHHHHH--HHHTTCEEEEECSSCCHHHHH----HHHT--TCCEESSCCTTSC----CCCSEEEECTTC
T ss_pred EEEEEeECHHHHHHHHHH--HHhCCCeEEEEeCCCChhHHH----HHHC--CCeEEeeeccccc----CCCCEEEEecCc
Confidence 455567667999987533 333488999999983233322 4321 1445445433323 458999998876
Q ss_pred CCccHHHHHHHHHhh
Q 042616 123 DIDGHKNVFRAAKES 137 (220)
Q Consensus 123 ~~~~y~~~l~~l~~~ 137 (220)
. .+-++ +..+++.
T Consensus 71 ~-~~npe-l~~A~~~ 83 (89)
T d1j6ua1 71 R-DDNPE-IVRARME 83 (89)
T ss_dssp C-TTCHH-HHHHHHT
T ss_pred C-CCCHH-HHHHHHc
Confidence 2 33344 4444443
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=83.30 E-value=0.9 Score=31.78 Aligned_cols=48 Identities=13% Similarity=-0.007 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCC
Q 042616 26 PDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSG 76 (220)
Q Consensus 26 p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d 76 (220)
.+.+.-+.......++++|+-||. |+.++-+|.++...+-+|+-||..
T Consensus 15 ~~da~~i~~~~~~~~~k~vvViGg---G~iG~E~A~~l~~~g~~Vtlie~~ 62 (123)
T d1nhpa2 15 RQWAIKLKQKTVDPEVNNVVVIGS---GYIGIEAAEAFAKAGKKVTVIDIL 62 (123)
T ss_dssp HHHHHHHHHHHTCTTCCEEEEECC---SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHHHHhhccCCCEEEEECC---hHHHHHHHHHhhccceEEEEEEec
Confidence 344555666666677899999994 566667777777768899999887
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.23 E-value=2.1 Score=33.68 Aligned_cols=80 Identities=10% Similarity=0.007 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh------hhhhc----
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK------LLMGD---- 109 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~------~L~~~---- 109 (220)
+.|.+|-.|++ .| ....+|.++.+.|.+|+.++.+ ++.++.+.+.+.....++..+..|..+ .+...
T Consensus 7 kgK~alVTGas-~G-IG~aiA~~la~~Ga~V~~~~r~-~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d1xq1a_ 7 KAKTVLVTGGT-KG-IGHAIVEEFAGFGAVIHTCARN-EYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMF 83 (259)
T ss_dssp TTCEEEETTTT-SH-HHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CH-HHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHh
Confidence 56889988852 23 2344444444448999999999 888887777776333568888887632 12111
Q ss_pred CCCccEEEEcCCC
Q 042616 110 YRGADFVLIDCNI 122 (220)
Q Consensus 110 ~~~~D~VfiD~~k 122 (220)
.+.+|+++-.+..
T Consensus 84 ~g~idilvnnAG~ 96 (259)
T d1xq1a_ 84 GGKLDILINNLGA 96 (259)
T ss_dssp TTCCSEEEEECCC
T ss_pred CCCcccccccccc
Confidence 2579999876654
|
| >d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Methylesterase CheB, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=82.94 E-value=3.4 Score=29.11 Aligned_cols=68 Identities=7% Similarity=-0.079 Sum_probs=48.5
Q ss_pred EEEEEeCCchhHHHHHHHHhcccCCcEEE-EEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 69 RVVCILSGVIGDIDASKKSLGRYANCIEF-VKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 69 rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~-v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
||.-||=+ +...+..+..++.......+ ...|+.+.+..+ ...+|+|++|-.-+.-+-.+.++.+...
T Consensus 5 rVLiVDD~-~~~r~~l~~~L~~~g~~~~v~~a~~g~~al~~~~~~~pDlvllDi~MP~~dG~e~~~~ir~~ 74 (140)
T d1a2oa1 5 RVLSVDDS-ALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMDGLDFLEKLMRL 74 (140)
T ss_dssp EEEEECSC-HHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEECCCSSSCHHHHHHHHHHS
T ss_pred EEEEEeCC-HHHHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 78889999 88888888888733222222 346776665433 2578999999977445778889998876
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=82.91 E-value=1.6 Score=30.00 Aligned_cols=48 Identities=4% Similarity=-0.148 Sum_probs=33.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCc-------hhHHHHHHHHhc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGV-------IGDIDASKKSLG 89 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~-------~~~~~~Ar~~l~ 89 (220)
.-|++|+-||. |+.++-+|.++...+.+|+-+|..+ ++..+..++.++
T Consensus 19 ~~p~~vvIiGg---G~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~ 73 (116)
T d1gesa2 19 ALPERVAVVGA---GYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMN 73 (116)
T ss_dssp SCCSEEEEECC---SHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHH
T ss_pred hCCCEEEEECC---ChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHH
Confidence 45799999994 5666677777777688999999851 344455566664
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.81 E-value=2.9 Score=32.55 Aligned_cols=80 Identities=3% Similarity=-0.001 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hh---hcC
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LM---GDY 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~---~~~ 110 (220)
..+.+|-.|++ .| ....+|..+.+.|.+|+.++.+ ++.++...+.++....++..+..|..+. +. ...
T Consensus 6 ~Gkv~lITGas-~G-IG~~ia~~la~~G~~V~l~~r~-~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 6 TGEIVLITGAG-HG-IGRLTAYEFAKLKSKLVLWDIN-KHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp TTCEEEEETTT-SH-HHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCC-cH-HHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 46788888862 23 2334444444448999999999 8888887777774446788888876432 11 114
Q ss_pred CCccEEEEcCCC
Q 042616 111 RGADFVLIDCNI 122 (220)
Q Consensus 111 ~~~D~VfiD~~k 122 (220)
+..|+++..+..
T Consensus 83 g~idilinnag~ 94 (244)
T d1yb1a_ 83 GDVSILVNNAGV 94 (244)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCceeEeeccc
Confidence 679999977665
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=82.76 E-value=1.8 Score=33.81 Aligned_cols=80 Identities=14% Similarity=0.221 Sum_probs=52.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhhc---
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMGD--- 109 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~~--- 109 (220)
.+.|.+|-.|. ++-....+|..+.+.|.+|+.++.+ ++.++.+.+.+.. .+++.++..|..+. +...
T Consensus 4 L~gK~alVTGa--s~GIG~aia~~la~~Ga~V~~~~r~-~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (251)
T d1zk4a1 4 LDGKVAIITGG--TLGIGLAIATKFVEEGAKVMITGRH-SDVGEKAAKSVGT-PDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTCEEEETTT--TSHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCC--CCHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHhCC-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35688888884 2223334444444448999999999 8888888777752 25788999886431 2111
Q ss_pred CCCccEEEEcCCC
Q 042616 110 YRGADFVLIDCNI 122 (220)
Q Consensus 110 ~~~~D~VfiD~~k 122 (220)
.+++|.++-.+..
T Consensus 80 ~G~iDiLVnnAg~ 92 (251)
T d1zk4a1 80 FGPVSTLVNNAGI 92 (251)
T ss_dssp HSSCCEEEECCCC
T ss_pred hCCceEEEecccc
Confidence 3789998876644
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=82.71 E-value=2.4 Score=33.10 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcchhh------hhhhc---
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQK------LLMGD--- 109 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~------~L~~~--- 109 (220)
+.|.+|-.|.+ .| ....+|+.+.+.|.+|+.++.+ ++.++.+.+.+. ....++..+..|..+ ++...
T Consensus 4 ~gK~~lITGas-~G-IG~aia~~la~~Ga~V~i~~r~-~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 4 RGRVALVTGGS-RG-LGFGIAQGLAEAGCSVVVASRN-LEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp TTCEEEEETTT-SH-HHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CH-HHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56888988852 22 2334444443448999999999 777766655553 334568888888643 12111
Q ss_pred CCCccEEEEcCCC
Q 042616 110 YRGADFVLIDCNI 122 (220)
Q Consensus 110 ~~~~D~VfiD~~k 122 (220)
.+++|.++-.+..
T Consensus 81 ~g~iDiLVnnAG~ 93 (251)
T d1vl8a_ 81 FGKLDTVVNAAGI 93 (251)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 3689999976643
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.45 E-value=0.8 Score=37.65 Aligned_cols=77 Identities=13% Similarity=0.021 Sum_probs=46.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhH-----------------HHHHHHHhcccCCcEEEEEcchh
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGD-----------------IDASKKSLGRYANCIEFVKGDAQ 103 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~-----------------~~~Ar~~l~g~~~~Ve~v~gda~ 103 (220)
.++||-.| + +|+.+-+|+..+.+.|-.|+++|.- -.. .+..++.-.....+++++.+|..
T Consensus 1 g~kILVTG-a-tGfiG~~lv~~Ll~~g~~V~~iDnl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~ 77 (393)
T d1i24a_ 1 GSRVMVIG-G-DGYCGWATALHLSKKNYEVCIVDNL-VRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDIC 77 (393)
T ss_dssp -CEEEEET-T-TSHHHHHHHHHHHHTTCEEEEEECC-HHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTT
T ss_pred CCEEEEEC-C-CcHHHHHHHHHHHHCcCEEEEEecC-CcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCC
Confidence 36899888 3 7988888888887767789999832 111 11111111112257999999975
Q ss_pred h--hhhhcC--CCccEEEEcC
Q 042616 104 K--LLMGDY--RGADFVLIDC 120 (220)
Q Consensus 104 ~--~L~~~~--~~~D~VfiD~ 120 (220)
+ .+.... ..+|.||-=+
T Consensus 78 d~~~l~~~~~~~~~d~ViHlA 98 (393)
T d1i24a_ 78 DFEFLAESFKSFEPDSVVHFG 98 (393)
T ss_dssp SHHHHHHHHHHHCCSEEEECC
T ss_pred CHHHHHHHHHhhcchheeccc
Confidence 3 232222 3579888544
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=82.27 E-value=1.6 Score=30.21 Aligned_cols=49 Identities=14% Similarity=-0.018 Sum_probs=35.0
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCc-------hhHHHHHHHHhc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGV-------IGDIDASKKSLG 89 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~-------~~~~~~Ar~~l~ 89 (220)
...|++++-||. |+.++-+|.++...|.+|+-++..+ ++..+..++.++
T Consensus 19 ~~~p~~i~IiG~---G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~ 74 (119)
T d3lada2 19 QNVPGKLGVIGA---GVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILT 74 (119)
T ss_dssp SSCCSEEEEECC---SHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEECC---ChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHH
Confidence 456899999994 6777777777777788999999651 344455555554
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=82.01 E-value=1.5 Score=34.64 Aligned_cols=80 Identities=10% Similarity=0.112 Sum_probs=53.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--cc-CCcEEEEEcchhh------hhhhc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RY-ANCIEFVKGDAQK------LLMGD 109 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~-~~~Ve~v~gda~~------~L~~~ 109 (220)
.+.|.+|-.|.+ .| ....+|+.+...|.+|+.++.+ ++.++.+.+.+. +. ..++..+..|..+ ++...
T Consensus 3 L~gK~alVTGas-~G-IG~aia~~la~~Ga~V~l~~r~-~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 79 (272)
T d1xkqa_ 3 FSNKTVIITGSS-NG-IGRTTAILFAQEGANVTITGRS-SERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST 79 (272)
T ss_dssp TTTCEEEETTCS-SH-HHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCcC-cH-HHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHH
Confidence 356888888852 22 2334444444448899999999 888888887775 33 3468889887533 12111
Q ss_pred ---CCCccEEEEcCC
Q 042616 110 ---YRGADFVLIDCN 121 (220)
Q Consensus 110 ---~~~~D~VfiD~~ 121 (220)
.+++|.++..+.
T Consensus 80 ~~~~g~iDilvnnAG 94 (272)
T d1xkqa_ 80 LKQFGKIDVLVNNAG 94 (272)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCceEEEeCCc
Confidence 368999997654
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=81.95 E-value=1 Score=31.90 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=25.1
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCch
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVI 78 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~ 78 (220)
+++|+-||.|.+|.....-.....+ ..+|+.||++ +
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~-~~~Vtlie~~-~ 37 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPN-T 37 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSC-S
T ss_pred CCcEEEECccHHHHHHHHHHHHcCC-CCcEEEEECC-C
Confidence 5799999987667665543333332 5799999998 6
|
| >d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]
Probab=81.92 E-value=4.6 Score=28.43 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=48.0
Q ss_pred CcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc--------CCCccEEEEcCCCCCccHHHHHHHHHh
Q 042616 67 GGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD--------YRGADFVLIDCNIDIDGHKNVFRAAKE 136 (220)
Q Consensus 67 ~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~--------~~~~D~VfiD~~k~~~~y~~~l~~l~~ 136 (220)
..||.-||-| +...+..++.++ +....|.. ..++.+.+..+ ...||+|++|...+.-+-.+.++.++.
T Consensus 2 ~krILiVDD~-~~~~~~l~~~L~~~g~~~~v~~-a~~g~eAl~~l~~~~~~~~~~~pdlillD~~mP~~dG~el~~~ir~ 79 (140)
T d1k68a_ 2 HKKIFLVEDN-KADIRLIQEALANSTVPHEVVT-VRDGMEAMAYLRQEGEYANASRPDLILLDLNLPKKDGREVLAEIKS 79 (140)
T ss_dssp CCEEEEECCC-HHHHHHHHHHHHTCSSCCEEEE-ECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred CCcEEEEECC-HHHHHHHHHHHHHcCCCeEEEE-ECCHHHHHHHHHHhHHhhccCCCCEEEEeeccccccChHHHHHHHh
Confidence 3589999999 999999999887 44333433 34555544222 246899999998854566888888876
Q ss_pred h
Q 042616 137 S 137 (220)
Q Consensus 137 ~ 137 (220)
.
T Consensus 80 ~ 80 (140)
T d1k68a_ 80 D 80 (140)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=81.91 E-value=1.1 Score=36.18 Aligned_cols=92 Identities=18% Similarity=0.261 Sum_probs=58.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh---hhhhcCCCccEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK---LLMGDYRGADFV 116 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~---~L~~~~~~~D~V 116 (220)
+-++||-+|+ +|+..-.++..+-+.+-+|+++-.+ +..... ..+... .+++++.+|..+ .+.......|.+
T Consensus 2 ~kktIlVtGa--tG~iG~~lv~~Ll~~G~~V~~l~R~-~~~~~~--~~~~~~-~~v~~~~gD~~d~~~~~~~a~~~~~~~ 75 (350)
T d1xgka_ 2 QKKTIAVVGA--TGRQGASLIRVAAAVGHHVRAQVHS-LKGLIA--EELQAI-PNVTLFQGPLLNNVPLMDTLFEGAHLA 75 (350)
T ss_dssp CCCCEEEEST--TSHHHHHHHHHHHHTTCCEEEEESC-SCSHHH--HHHHTS-TTEEEEESCCTTCHHHHHHHHTTCSEE
T ss_pred CCCEEEEECC--ChHHHHHHHHHHHhCCCeEEEEECC-cchhhh--hhhccc-CCCEEEEeeCCCcHHHHHHHhcCCceE
Confidence 4578999983 7888888888876657789999887 654422 222222 469999998644 343444667888
Q ss_pred EEcCCCCC-cc---HHHHHHHHHhh
Q 042616 117 LIDCNIDI-DG---HKNVFRAAKES 137 (220)
Q Consensus 117 fiD~~k~~-~~---y~~~l~~l~~~ 137 (220)
|+-..... .+ -.+.++.+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~aa~~a 100 (350)
T d1xgka_ 76 FINTTSQAGDEIAIGKDLADAAKRA 100 (350)
T ss_dssp EECCCSTTSCHHHHHHHHHHHHHHH
T ss_pred EeecccccchhhhhhhHHHHHHHHh
Confidence 76543311 11 24566666665
|
| >d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
Probab=81.89 E-value=4.4 Score=28.69 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=47.9
Q ss_pred CcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE-EEcchhhhhhhc--------CCCccEEEEcCCCCCccHHHHHHHHH
Q 042616 67 GGRVVCILSGVIGDIDASKKSLG--RYANCIEF-VKGDAQKLLMGD--------YRGADFVLIDCNIDIDGHKNVFRAAK 135 (220)
Q Consensus 67 ~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~-v~gda~~~L~~~--------~~~~D~VfiD~~k~~~~y~~~l~~l~ 135 (220)
..+|.-||-| +...+..++.++ ++. .++ ...|+.+.+..+ ...+|+|++|......+-.+.++.++
T Consensus 3 pk~ILiVdD~-~~~~~~l~~~L~~~g~~--~~v~~a~~g~~Al~~l~~~~~~~~~~~pdlIllD~~mP~~~G~el~~~ir 79 (144)
T d1i3ca_ 3 PKVILLVEDS-KADSRLVQEVLKTSTID--HELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIK 79 (144)
T ss_dssp CEEEEEECCC-HHHHHHHHHHHHSCCSC--EEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred CCEEEEEECC-HHHHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHhchhhhccCCCCEEEEECccccccchHHHHHHH
Confidence 3688899999 998999999886 442 333 345655554322 13599999999885456678888887
Q ss_pred hh
Q 042616 136 ES 137 (220)
Q Consensus 136 ~~ 137 (220)
..
T Consensus 80 ~~ 81 (144)
T d1i3ca_ 80 QN 81 (144)
T ss_dssp HC
T ss_pred hC
Confidence 65
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.84 E-value=0.96 Score=31.62 Aligned_cols=48 Identities=13% Similarity=0.038 Sum_probs=36.0
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCch--------hHHHHHHHHhc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVI--------GDIDASKKSLG 89 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~--------~~~~~Ar~~l~ 89 (220)
...|++++-||. |+.++-+|.++...|.+|+-+|.. + +..+.+++.++
T Consensus 20 ~~~p~~~vIiG~---G~ig~E~A~~l~~lG~~Vtii~~~-~~~l~~~d~ei~~~l~~~l~ 75 (122)
T d1v59a2 20 KEIPKRLTIIGG---GIIGLEMGSVYSRLGSKVTVVEFQ-PQIGASMDGEVAKATQKFLK 75 (122)
T ss_dssp SSCCSEEEEECC---SHHHHHHHHHHHHTTCEEEEECSS-SSSSSSSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEECC---CchHHHHHHHHHhhCcceeEEEec-cccchhhhhhhHHHHHHHHH
Confidence 345899999994 666777777777778899999976 4 56677777775
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=81.81 E-value=0.62 Score=36.39 Aligned_cols=82 Identities=16% Similarity=0.094 Sum_probs=45.9
Q ss_pred CCCCEEEEEcCCchHHHHHH--HHHHcCCCCcEE--EEEeCCchhHHHHHHHHhcccCCcEEEEEc----chhhhhhhc-
Q 042616 39 NNAQLIVMACSSIAVSRTLA--LVAAARQTGGRV--VCILSGVIGDIDASKKSLGRYANCIEFVKG----DAQKLLMGD- 109 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~--LA~A~~~~~grV--~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g----da~~~L~~~- 109 (220)
.+|..|+=+|..|+|-+|.. ||..+...+.+| ++.|.......+.-+.+.+-+ .|.++.. |....+...
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l--~v~~~~~~~~~d~~~~l~~~~ 84 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRN--NIPVIAQHTGADSASVIFDAI 84 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHT--TCCEECCSTTCCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhc--CCcccccccCCCHHHHHHHHH
Confidence 34566677886458877764 776665545565 555554344445555544422 2444432 233333211
Q ss_pred ----CCCccEEEEcCCC
Q 042616 110 ----YRGADFVLIDCNI 122 (220)
Q Consensus 110 ----~~~~D~VfiD~~k 122 (220)
.+.+|+||||..-
T Consensus 85 ~~a~~~~~d~ilIDTaG 101 (211)
T d2qy9a2 85 QAAKARNIDVLIADTAG 101 (211)
T ss_dssp HHHHHTTCSEEEECCCC
T ss_pred HHHHHcCCCEEEeccCC
Confidence 2579999999976
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=81.77 E-value=4 Score=29.70 Aligned_cols=82 Identities=12% Similarity=0.054 Sum_probs=46.6
Q ss_pred HHHHHHhh---CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh
Q 042616 31 FISALAAG---NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 31 ~L~~La~~---~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~ 107 (220)
|+..|-.. .+.++||-+|+|+++-+.++-... .+.+|+-+.++ +++.+...+.+... ..++.+.- .+..
T Consensus 5 f~~~l~~~~~~~~~k~vlIlGaGGaarai~~al~~---~g~~i~I~nRt-~~ka~~l~~~~~~~-~~~~~~~~--~~~~- 76 (170)
T d1nyta1 5 LLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLS---LDCAVTITNRT-VSRAEELAKLFAHT-GSIQALSM--DELE- 76 (170)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSS-HHHHHHHHHHTGGG-SSEEECCS--GGGT-
T ss_pred HHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHhcc---cceEEEeccch-HHHHHHHHHHHhhc-cccccccc--cccc-
Confidence 44455332 346899999998776655542222 25688888999 77776655555432 23433322 2211
Q ss_pred hcCCCccEEEEcCCC
Q 042616 108 GDYRGADFVLIDCNI 122 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k 122 (220)
...+|+|+--.+.
T Consensus 77 --~~~~dliIN~Tp~ 89 (170)
T d1nyta1 77 --GHEFDLIINATSS 89 (170)
T ss_dssp --TCCCSEEEECCSC
T ss_pred --ccccceeeccccc
Confidence 2457877655443
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.55 E-value=2.8 Score=32.48 Aligned_cols=75 Identities=20% Similarity=0.195 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh------hhhhcCCCc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK------LLMGDYRGA 113 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~------~L~~~~~~~ 113 (220)
+.|.+|-.|.+ +-....+|+.+.+.|.+|+.++.+ ++.++...+.+. .++.+..|..+ .+.+ .+++
T Consensus 6 ~GK~~lITGas--~GIG~aia~~la~~G~~V~~~~r~-~~~l~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~-~g~i 77 (244)
T d1pr9a_ 6 AGRRVLVTGAG--KGIGRGTVQALHATGARVVAVSRT-QADLDSLVRECP----GIEPVCVDLGDWEATERALGS-VGPV 77 (244)
T ss_dssp TTCEEEEESTT--SHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHST----TCEEEECCTTCHHHHHHHHTT-CCCC
T ss_pred CCCEEEEeCCC--CHHHHHHHHHHHHcCCEEEEEECC-HHHHHHHHHhcC----CCeEEEEeCCCHHHHHHHHHH-hCCc
Confidence 56899998852 333445555554458899999999 777766655543 35566666532 2322 4789
Q ss_pred cEEEEcCCC
Q 042616 114 DFVLIDCNI 122 (220)
Q Consensus 114 D~VfiD~~k 122 (220)
|.++-.+..
T Consensus 78 DilVnnAg~ 86 (244)
T d1pr9a_ 78 DLLVNNAAV 86 (244)
T ss_dssp CEEEECCCC
T ss_pred eEEEecccc
Confidence 999866544
|
| >d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Escherichia coli [TaxId: 562]
Probab=81.18 E-value=3 Score=28.95 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=49.1
Q ss_pred CcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 67 GGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 67 ~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
+-||.-||-+ +...+..+..++ |+ ..|. ...++.+.+..+ ..+||+|++|-.-+..+-.+.++.++..
T Consensus 4 ~lriLvVDD~-~~~r~~i~~~L~~~g~-~~v~-~a~~g~~a~~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 74 (128)
T d1jbea_ 4 ELKFLVVDDF-STMRRIVRNLLKELGF-NNVE-EAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAD 74 (128)
T ss_dssp TCCEEEECSC-HHHHHHHHHHHHHTTC-CCEE-EESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC-
T ss_pred CCEEEEEeCC-HHHHHHHHHHHHHCCC-cEEE-EecCchHHHHHHhcCCCCEEEEecccccCCHHHHHHHHHhC
Confidence 3578899999 999999999887 54 2333 346666655433 4689999999988545668888888764
|
| >d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein KdpE, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=81.08 E-value=2.3 Score=29.21 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=47.3
Q ss_pred EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 69 RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 69 rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
.|.-||-| +...+..++.++...-+|. ...++.+.+..+ ..+||+|++|-..+..+-.+.++.++..
T Consensus 2 nILiVDDd-~~~~~~l~~~L~~~g~~v~-~a~~~~eal~~l~~~~~dliilD~~mP~~~G~e~~~~ir~~ 69 (119)
T d1zh2a1 2 NVLIVEDE-QAIRRFLRTALEGDGMRVF-EAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQW 69 (119)
T ss_dssp EEEEECSC-HHHHHHHHHHHHTTTCEEE-EESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTT
T ss_pred EEEEEECC-HHHHHHHHHHHHHCCCEEE-EeCCHHHHHHHHHhcCCCEEEeccccCCCCCchHHHHHHhc
Confidence 46778999 9999999998873322343 456666665443 3579999999977445567788888765
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=80.59 E-value=0.48 Score=38.36 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=46.5
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCc---hhHHHHHHHHhcccCCcEEEEEcchhhh--hhhc--CCCccE
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGV---IGDIDASKKSLGRYANCIEFVKGDAQKL--LMGD--YRGADF 115 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~---~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~--~~~~D~ 115 (220)
+||-+| | +|+.+-+|+..+...+-.|+.+|.-. .......+. +. .++++++++|..+. +... ..++|.
T Consensus 2 KiLItG-~-tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~-~~--~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ 76 (338)
T d1udca_ 2 RVLVTG-G-SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LG--GKHPTFVEGDIRNEALMTEILHDHAIDT 76 (338)
T ss_dssp EEEEET-T-TSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHH-HH--TSCCEEEECCTTCHHHHHHHHHHTTCSE
T ss_pred EEEEEC-C-CCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHh-hc--CCCCEEEEeecCCHHHHHHHHhccCCCE
Confidence 589888 3 79999998888876677899998520 222222111 11 25799999996542 2222 246899
Q ss_pred EEEcC
Q 042616 116 VLIDC 120 (220)
Q Consensus 116 VfiD~ 120 (220)
||-=+
T Consensus 77 ViHlA 81 (338)
T d1udca_ 77 VIHFA 81 (338)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 98544
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=80.42 E-value=2 Score=33.70 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=52.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--cc-CCcEEEEEcchhh------hhhhc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RY-ANCIEFVKGDAQK------LLMGD 109 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~-~~~Ve~v~gda~~------~L~~~ 109 (220)
.+.|.+|-.|.+ +-....+|+.+.+.|.+|+.++.+ ++.++.+.+.+. +. ..++.++..|..+ ++...
T Consensus 3 l~gKvalVTGas--~GIG~aia~~la~~Ga~V~~~~r~-~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~ 79 (264)
T d1spxa_ 3 FAEKVAIITGSS--NGIGRATAVLFAREGAKVTITGRH-AERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTT 79 (264)
T ss_dssp TTTCEEEETTTT--SHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCcC--CHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHH
Confidence 356788887752 223344444444448999999999 888888777775 33 3568999988632 22211
Q ss_pred ---CCCccEEEEcCC
Q 042616 110 ---YRGADFVLIDCN 121 (220)
Q Consensus 110 ---~~~~D~VfiD~~ 121 (220)
.+++|.++-.+.
T Consensus 80 ~~~~g~iDilvnnAG 94 (264)
T d1spxa_ 80 LGKFGKLDILVNNAG 94 (264)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCCCEeecccc
Confidence 368999987653
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=80.13 E-value=2.7 Score=32.39 Aligned_cols=92 Identities=13% Similarity=0.047 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCch------------------hHHHHHHHHhc--ccCCcEEEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVI------------------GDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~------------------~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
+..+|+-+|+|++|...+.....+. -|+++-||.|.= .+++.|++.++ ...-+|+.+.
T Consensus 29 ~~~~VliiG~GglGs~va~~La~~G--vg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~ 106 (247)
T d1jw9b_ 29 KDSRVLIVGLGGLGCAASQYLASAG--VGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN 106 (247)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcC--CCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhh
Confidence 4467999999989987776443333 389999997721 13456666665 2223355554
Q ss_pred cch-hhhhhhcCCCccEEEEcCCCCCccHHHHHHHHH
Q 042616 100 GDA-QKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAK 135 (220)
Q Consensus 100 gda-~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~ 135 (220)
... .+.+......+|+++...+. .....++..+.
T Consensus 107 ~~~~~~~~~~~~~~~divid~~d~--~~~~~~in~~~ 141 (247)
T d1jw9b_ 107 ALLDDAELAALIAEHDLVLDCTDN--VAVRNQLNAGC 141 (247)
T ss_dssp SCCCHHHHHHHHHTSSEEEECCSS--HHHHHHHHHHH
T ss_pred hhhhhccccccccccceeeeccch--hhhhhhHHHHH
Confidence 422 11122223567777644443 33443444433
|