Citrus Sinensis ID: 042697

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
MSWLINSIEVSIGKTHLFLPTAKDVWDAVRETYSDLKNSSQILELKTRLCKLGKVIVQFLSRPKRSVRRNPAANVDSITVHSTPKFEISKRSLKKALSQLADPVHENPQSELEKVKRSLRKVNNPLVENSAFVQSEFEIEKQNHSLDKLPTSSICHEGLEWSLRYLGEKMKKKTTLKQSKLPKVEAMPNLVEMNEMSDSGAKDKTIPMTNGNFEPKEDSTNNENNKSSRKVDVLTKKECVENELQSSPSLPSYIAATESAKAKLRLQGSSRSSEDGAEKNSGTGRHSRFELPYNINFSSSKFSHIDSQFVSFSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHYLCSKSERQSSLSI
cccccccccHHHHccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHcccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccc
ccEEEccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccc
MSWLINSIEVSigkthlflptAKDVWDAVRETYSDLKNSSQILELKTRLCKLGKVIVQFlsrpkrsvrrnpaanvdsitvhstpkfeiSKRSLKKALSQladpvhenpqsELEKVKRSLRKvnnplvensafvqSEFEIEkqnhsldklptssichegLEWSLRYLGEKMkkkttlkqsklpkveampnlvemnemsdsgakdktipmtngnfepkedstnnennkssrkvdvltkkecvenelqsspslpsyIAATESAKAKLRlqgssrssedgaeknsgtgrhsrfelpyninfssskfshidsqFVSFSMYLYADLISVFEVFlprlhlypnissLLNREVAGVITQLHYLCSKserqsslsi
MSWLINSIEVSIGKTHLFLPTAKDVWDAVRETYSDlknssqileLKTRLCKLGKVIVqflsrpkrsvrrnpaanvdsitvhstpkfeiSKRSLKKALSQladpvhenpqselekvkRSLRKVNNPLVENSAFVQSEFEIEKQnhsldklptssicHEGLEWSLRYLGEKMKkkttlkqsklpkveampnlVEMNEMSDSGAKDKTIPMTNgnfepkedstnnennkssrkvdvltkKECVEnelqsspslpsyIAATESAKAKLrlqgssrssedgaeknsgtgrhsrfelPYNINFSSSKFSHIDSQFVSFSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHYlcskserqsslsi
MSWLINSIEVSIGKTHLFLPTAKDVWDAVRETYSDLKNSSQILELKTRLCKLGKVIVQFLSRPKRSVRRNPAANVDSITVHSTPKFEISKRSLKKALSQLADPVHENPQSELEKVKRSLRKVNNPLVENSAFVQSEFEIEKQNHSLDKLPTSSICHEGLEWSLRYLGEkmkkkttlkqsklpkVEAMPNLVEMNEMSDSGAKDKTIPMTNGNFEPKEDSTNNENNKSSRKVDVLTKKECVENELQSSPSLPSYIAATESAKAKLRLQGSSRSSEDGAEKNSGTGRHSRFELPYNINFSSSKFSHIDSQFVSFSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHYLCSKSERQSSLSI
**WLINSIEVSIGKTHLFLPTAKDVWDAVRETYSDLKNSSQILELKTRLCKLGKVIVQFLS******************************************************************************************SSICHEGLEWSLRYLG**************************************************************************************************************************ELPYNINFSSSKFSHIDSQFVSFSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHYLC***********
MSWLINSIEVSIGKTHLFLPTAKDVWDAVRETYSDLKNSSQILELKTRLCKLGKVIVQFLSRPKRSVRRNPAANVD********************************************************************************************************************************************************************************************************************************************SMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHYLCSKSE*******
MSWLINSIEVSIGKTHLFLPTAKDVWDAVRETYSDLKNSSQILELKTRLCKLGKVIVQFLSRPKRSVRRNPAANVDSITVHSTPKFEISKRSLKKALSQLADPVHENPQSELEKVKRSLRKVNNPLVENSAFVQSEFEIEKQNHSLDKLPTSSICHEGLEWSLRYLGEKMKKKTTLKQSKLPKVEAMPNLVEMNEMSDSGAKDKTIPMTNGNFEP***************VDVLTKKECVENELQSSPSLPSYIAATES*************************RHSRFELPYNINFSSSKFSHIDSQFVSFSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHYLCS**********
*SWLINSIEVSIGKTHLFLPTAKDVWDAVRETYSDLKNSSQILELKTRLCKLGKVIVQFL***************************************************************************************************************************************************************************************************************************************************HIDSQFVSFSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHYLCSK*********
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MSWLINSIEVSIGKTHLFLPTAKDVWDAVRETYSDLKNSSQILELKTRLCKLGKVIVQFLSRPKRSVRRNPAANVDSITVHSTPKFEISKRSLKKALSQLADPVHENPQSELEKVKRSLRKVNNPLVENSAFVQSEFEIEKQNHSLDKLPTSSICHEGLEWSLRYLGEKMKKKTTLKQSKLPKVEAMPNLVEMNEMSDSGAKDKTIPMTNGNFEPKEDSTNNENNKSSRKVDVLTKKECVENELQSSPSLPSYIAATESAKAKLRLQGSSRSSEDGAEKNSGTGRHSRFELPYNINFSSSKFSHIDSQFVSFSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHYLCSKSERQSSLSI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query367 2.2.26 [Sep-21-2011]
Q8L4D8587 Protein IQ-DOMAIN 31 OS=A yes no 0.602 0.376 0.391 2e-27
>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1 Back     alignment and function desciption
 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 142/263 (53%), Gaps = 42/263 (15%)

Query: 61  SRPKRSVRRNPAANVDSITVHSTPKFEISKRSLKKALSQ-LADPVHENPQSELEKVKRSL 119
           ++PK+SVR+ PA+N +S +V ++ +FE  KRS +K  SQ +  P  E+PQ ELEKVKRSL
Sbjct: 280 AKPKKSVRKVPASNFESSSVQTSFEFEKPKRSFRKVSSQSIEPPAVEDPQIELEKVKRSL 339

Query: 120 RKVNNPLVENSAFVQ--SEFEIEKQNHSLDKLPTSS--ICHEGLEWSLRYLGEKMKKKTT 175
           RKV+NP+VE+S   Q     E+EK    ++K   SS  + HE  E  +    EK  KK  
Sbjct: 340 RKVHNPVVESSIQPQRSPRKEVEKPKLGVEKTRESSYPLVHETAEEPVNVCDEK--KKQE 397

Query: 176 LKQSKLPKVEAM------PNLVEMNEMSDSG----------------------AKDKTIP 207
           + +    +V A+      P  +E NE  DS                        K++  P
Sbjct: 398 ISEQPEEEVHALEMEVHTPGPLETNEALDSSLVNQIDSNEKAMVEEKPSMEKDTKEEKTP 457

Query: 208 MTNGNFEPKEDSTNNENNKSSRKVDVLTKKECVE--NELQSSPSLPSYIAATESAKAKLR 265
             N     KE+S   EN KS +K    +K E  E     ++SPS+PSY+ AT+SAKAKLR
Sbjct: 458 KPNN----KENSAGKENQKSRKKGSATSKTEREESNGHHETSPSIPSYMQATKSAKAKLR 513

Query: 266 LQGSSRSSE-DGAEKNSGTGRHS 287
           LQGS +S+E DG EK +   RHS
Sbjct: 514 LQGSPKSAEQDGTEKATVPRRHS 536

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query367
225456707 573 PREDICTED: protein IQ-DOMAIN 31-like [Vi 0.626 0.401 0.496 4e-48
255540951 590 calmodulin binding protein, putative [Ri 0.648 0.403 0.472 6e-48
118481218 592 unknown [Populus trichocarpa] 0.648 0.402 0.467 2e-47
224124046 582 predicted protein [Populus trichocarpa] 0.648 0.408 0.467 3e-47
224121528359 predicted protein [Populus trichocarpa] 0.640 0.654 0.454 7e-43
356562818 587 PREDICTED: protein IQ-DOMAIN 31-like [Gl 0.648 0.405 0.408 5e-39
356512359 586 PREDICTED: protein IQ-DOMAIN 31-like [Gl 0.629 0.394 0.407 5e-38
356508590 583 PREDICTED: protein IQ-DOMAIN 31-like [Gl 0.634 0.399 0.385 6e-35
356516764 584 PREDICTED: protein IQ-DOMAIN 31-like [Gl 0.645 0.405 0.394 6e-34
7208782314 hypothetical protein [Cicer arietinum] 0.610 0.713 0.375 2e-33
>gi|225456707|ref|XP_002274035.1| PREDICTED: protein IQ-DOMAIN 31-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 126/254 (49%), Positives = 161/254 (63%), Gaps = 24/254 (9%)

Query: 61  SRPKRSVRRNPAANVDSITVHSTPKFEISKRSLKKALSQLADPVHENPQSELEKVKRSLR 120
            RPKRSVRR PA NVDS++  ST +FE  KR+ KK  S+ ADPV E+PQ+ELEKVKR+LR
Sbjct: 280 GRPKRSVRRIPAMNVDSVSAQSTTEFEKPKRNFKKLSSRPADPVLEHPQNELEKVKRNLR 339

Query: 121 KVNNPLVENSAFVQSEFEIEKQNHSLDKLPTSSICHEGLEWSLRYLGEKMKKKTTLKQSK 180
           KV+NP+VE+SA  Q   E EK   S++K+ +S+  H+ LE S+    EKM  +T +  SK
Sbjct: 340 KVHNPVVESSA--QPGNETEKPKQSMEKM-SSTPGHDVLEQSMGDSAEKMNMETPVTVSK 396

Query: 181 LPKVEAM---PNLVEMNEMSDS---------------GAKDKTIPMTNGNFEPKEDSTNN 222
           LP+VE     P ++ +NE SDS                 KD+ IP+ N     KED+ +N
Sbjct: 397 LPEVETTTEPPAVIWVNEASDSLHNDQTVVELQPVENSGKDENIPVANEELSSKEDAISN 456

Query: 223 ENNKSSRKVDVLTKKECVENELQSSPSLPSYIAATESAKAKLRLQGSSRSSEDGAEKNSG 282
           EN KSSRK  +  K E  EN L+SSP LPSY+A T+SAKAKLR QGS R  +D  EKN+ 
Sbjct: 457 ENQKSSRKASIPAKPERAENGLESSPKLPSYMATTQSAKAKLRAQGSPRLGQDVPEKNNI 516

Query: 283 TGRHSRFELPYNIN 296
           T RHS   LP + N
Sbjct: 517 TRRHS---LPSSTN 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255540951|ref|XP_002511540.1| calmodulin binding protein, putative [Ricinus communis] gi|223550655|gb|EEF52142.1| calmodulin binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|118481218|gb|ABK92559.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224124046|ref|XP_002330091.1| predicted protein [Populus trichocarpa] gi|222871225|gb|EEF08356.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224121528|ref|XP_002318607.1| predicted protein [Populus trichocarpa] gi|222859280|gb|EEE96827.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356562818|ref|XP_003549665.1| PREDICTED: protein IQ-DOMAIN 31-like [Glycine max] Back     alignment and taxonomy information
>gi|356512359|ref|XP_003524887.1| PREDICTED: protein IQ-DOMAIN 31-like [Glycine max] Back     alignment and taxonomy information
>gi|356508590|ref|XP_003523038.1| PREDICTED: protein IQ-DOMAIN 31-like [Glycine max] Back     alignment and taxonomy information
>gi|356516764|ref|XP_003527063.1| PREDICTED: protein IQ-DOMAIN 31-like [Glycine max] Back     alignment and taxonomy information
>gi|7208782|emb|CAB76913.1| hypothetical protein [Cicer arietinum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query367
TAIR|locus:2034929572 IQD30 "AT1G18840" [Arabidopsis 0.683 0.438 0.340 2.6e-24
TAIR|locus:2019205587 IQD31 "AT1G74690" [Arabidopsis 0.591 0.369 0.313 4.4e-17
TAIR|locus:2058862636 IQD29 "AT2G02790" [Arabidopsis 0.242 0.139 0.361 1.4e-06
TAIR|locus:2034929 IQD30 "AT1G18840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 285 (105.4 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 95/279 (34%), Positives = 144/279 (51%)

Query:    54 KVIVQFLSRPKRSVRRNPAANVDSITVHSTP-KFEISKRSLKK-ALSQLADPVH--ENPQ 109
             +++    +RPK+SVR+ P++N+D+ +V  T  + E  KRS +K + SQ  +P+   +NPQ
Sbjct:   274 QIVEAEFARPKKSVRKVPSSNLDNSSVAQTSSELEKPKRSFRKVSTSQSVEPLPSMDNPQ 333

Query:   110 SELEKVKRSLRKVNNPLVENSAFVQ--SEFEIEKQNHSLDKLPTS--SICHEGLEWSLRY 165
              +LEKVKR LRKV+NP+VENS   Q   +  +EK N SL++   +      + +  ++  
Sbjct:   334 VDLEKVKRGLRKVHNPVVENSIQPQLVPQIAVEKPNGSLEESVNAFDEEKEDEVAETVVQ 393

Query:   166 LGEXXXXXXXXXXXXXXXVEAMPNLVEMNE---MSDS--GAKDKTIPMTNGNFEPKEDST 220
               E                  + N +E +E   M++     K++  P  N     KE+S 
Sbjct:   394 QPEELIQTHTPLGTNESLDSTLVNQIEESEENVMAEEKEDVKEERTPKQNH----KENSA 449

Query:   221 NNENNKSSRKVDVLTKKECVE-----NELQ-SSPSLPSYIAATESAKAKLRLQGSSRSSE 274
               EN KS +K   +T  +  E     N  Q SSP +PSY+ AT+SAKAKLRLQGSS   +
Sbjct:   450 GKENQKSGKKASSVTATQTAEFQESGNGNQTSSPGIPSYMQATKSAKAKLRLQGSSSPRQ 509

Query:   275 DGAEKNSGTGRHSRFELPYNINFSSSKFSHIDSQFVSFS 313
              G  + +      R+ LP + N S+   SH     VS S
Sbjct:   510 LGTTEKASR----RYSLPSSGN-SAKITSHSPKTRVSNS 543
GO:0005516 "calmodulin binding" evidence=ISS
GO:0008150 "biological_process" evidence=ND
GO:0005773 "vacuole" evidence=IDA
TAIR|locus:2019205 IQD31 "AT1G74690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058862 IQD29 "AT2G02790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_1290019
SubName- Full=Putative uncharacterized protein; (582 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query367
pfam13178105 pfam13178, DUF4005, Protein of unknown function (D 1e-09
pfam14244135 pfam14244, UBN2_3, gag-polypeptide of LTR copia-ty 3e-05
>gnl|CDD|221960 pfam13178, DUF4005, Protein of unknown function (DUF4005) Back     alignment and domain information 
 Score = 54.9 bits (132), Expect = 1e-09
 Identities = 32/93 (34%), Positives = 47/93 (50%)

Query: 222 NENNKSSRKVDVLTKKECVENELQSSPSLPSYIAATESAKAKLRLQGSSRSSEDGAEKNS 281
           + +  S       TK E  +N   SSPSLP+Y+AATESAKAK+R Q + R   +  E+ S
Sbjct: 9   SSSKSSRSSPSNPTKSERDDNSSTSSPSLPNYMAATESAKAKVRSQSAPRQRPETEERES 68

Query: 282 GTGRHSRFELPYNINFSSSKFSHIDSQFVSFSM 314
           G+    R  LP + +   S  S   +     ++
Sbjct: 69  GSSATKRLSLPVSSSSGGSSSSSPRTSGGKGAL 101

This is a C-terminal region of plant IQ-containing putative calmodulin-binding proteins. Length = 105
>gnl|CDD|222621 pfam14244, UBN2_3, gag-polypeptide of LTR copia-type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 367
KOG0416189 consensus Ubiquitin-protein ligase [Posttranslatio 99.66
PF14244152 UBN2_3: gag-polypeptide of LTR copia-type 99.51
PF13178102 DUF4005: Protein of unknown function (DUF4005) 99.46
KOG0419152 consensus Ubiquitin-protein ligase [Posttranslatio 98.4
COG5078153 Ubiquitin-protein ligase [Posttranslational modifi 98.22
PF14223119 UBN2: gag-polypeptide of LTR copia-type 98.16
KOG0417148 consensus Ubiquitin-protein ligase [Posttranslatio 97.93
KOG0420184 consensus Ubiquitin-protein ligase [Posttranslatio 97.77
PTZ00390152 ubiquitin-conjugating enzyme; Provisional 97.77
PLN00172147 ubiquitin conjugating enzyme; Provisional 97.71
KOG0421175 consensus Ubiquitin-protein ligase [Posttranslatio 97.54
PF14227119 UBN2_2: gag-polypeptide of LTR copia-type 97.47
PF00179140 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP 97.28
cd00195141 UBCc Ubiquitin-conjugating enzyme E2, catalytic (U 97.03
smart00212145 UBCc Ubiquitin-conjugating enzyme E2, catalytic do 96.85
KOG0423223 consensus Ubiquitin-protein ligase [Posttranslatio 95.9
KOG0424158 consensus Ubiquitin-protein ligase [Posttranslatio 94.11
KOG0418200 consensus Ubiquitin-protein ligase [Posttranslatio 92.35
KOG0425171 consensus Ubiquitin-protein ligase [Posttranslatio 88.84
KOG0422153 consensus Ubiquitin-protein ligase [Posttranslatio 81.63
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.66  E-value=4.2e-17  Score=147.53  Aligned_cols=46  Identities=35%  Similarity=0.478  Sum_probs=42.0

Q ss_pred             hhhhhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697          309 FVSFSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY  354 (367)
Q Consensus       309 ~~~~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~  354 (367)
                      -|--.|+|||||+||||+||||||+||||+||||+|||+||+++..
T Consensus        88 ViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~  133 (189)
T KOG0416|consen   88 VINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPE  133 (189)
T ss_pred             HHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHH
Confidence            3445699999999999999999999999999999999999999653

>PF14244 UBN2_3: gag-polypeptide of LTR copia-type Back     alignment and domain information
>PF13178 DUF4005: Protein of unknown function (DUF4005) Back     alignment and domain information
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14223 UBN2: gag-polypeptide of LTR copia-type Back     alignment and domain information
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00390 ubiquitin-conjugating enzyme; Provisional Back     alignment and domain information
>PLN00172 ubiquitin conjugating enzyme; Provisional Back     alignment and domain information
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14227 UBN2_2: gag-polypeptide of LTR copia-type Back     alignment and domain information
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ] Back     alignment and domain information
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain Back     alignment and domain information
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues Back     alignment and domain information
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query367
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 50.2 bits (119), Expect = 6e-07
 Identities = 63/406 (15%), Positives = 114/406 (28%), Gaps = 138/406 (33%)

Query: 24  DVWDAVRETYSDLKNSSQILELKTRLCKLGKVIVQFLSRPKRSVRR--------NPA--- 72
           +V +A  + ++    S +IL L TR     K +  FLS    +            P    
Sbjct: 252 NVQNA--KAWNAFNLSCKIL-LTTR----FKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 73  ---ANVDSITVHSTPKFEISKRS-LKKALSQLADPVHENP-------QSELEKVKRSLRK 121
                         P+ E+   +     LS +A+ + +             +K+      
Sbjct: 305 SLLLKYLDCRPQDLPR-EVLTTNPR--RLSIIAESIRDGLATWDNWKHVNCDKLTT---- 357

Query: 122 VNNPLVENSAFVQSEFEIEKQNHSL-----D-KLPTSSICHEGLEWSLRYLGEKMKKKTT 175
               ++E+S  V    E  K    L        +PT  +    L W              
Sbjct: 358 ----IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS---LIW-------------- 396

Query: 176 LKQSKLPKVEAMPNLVEMNEMS--DSGAKDKTIPMTNGNFEPKEDSTNNENNKSSRKVDV 233
                + K + M  + ++++ S  +   K+ TI + +   E K     NE       VD 
Sbjct: 397 ---FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV-KLENEYALHRSIVDH 452

Query: 234 LTKKECVENELQSSPSLPSYIAATESAKAKLRLQGSSRSSEDGAEKNSGTGRH------- 286
               +  +++    P L  Y                           S  G H       
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFY-------------------------SHIGHHLKNIEHP 487

Query: 287 ---SRFELPY-NINFSSSKFSHIDS-------------QFVSFSMYL------YADLISV 323
              + F + + +  F   K  H  +             Q   +  Y+      Y  L++ 
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547

Query: 324 FEVFLPR----LHLYPNISSL---LNREVAGVITQLHYLCSKSERQ 362
              FLP+    L        L   L  E   +  +       + +Q
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE-------AHKQ 586
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query367
2onu_A152 Ubiquitin-conjugating enzyme, putative; UBC, plasm 98.16
2z5d_A179 Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig 98.08
2c2v_B154 Ubiquitin-conjugating enzyme E2 N; chaperone, heat 97.97
1yf9_A171 Ubiquitin carrier protein 4; SGPP, structural geno 97.93
2ayv_A166 Ubiquitin-conjugating enzyme E2; structural genomi 97.93
1ayz_A169 UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin 97.93
2pwq_A216 Ubiquitin conjugating enzyme; structural genomics 97.91
1yrv_A169 Ubiquitin-conjugating ligase MGC351130; structural 97.91
1zdn_A158 Ubiquitin-conjugating enzyme E2S; structural genom 97.9
1fxt_A149 Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM 97.89
3k9o_A201 Ubiquitin-conjugating enzyme E2 K; E2-25K, complex 97.89
1z2u_A150 Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro 97.89
4gpr_A151 Ubiquitin-conjugating enzyme family protein; ubiqu 97.88
2aak_A152 UBC1, ubiquitin conjugating enzyme; ubiquitin conj 97.88
2bep_A159 Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 97.86
1wzv_A155 Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A 97.84
2r0j_A149 Ubiquitin carrier protein; ubiquitin conjugating, 97.84
2c4o_A165 Ubiquitin-conjugating enzyme E2 D2; thioesterifica 97.84
3h8k_A164 Ubiquitin-conjugating enzyme E2 G2; alpha beta, al 97.81
2f4z_A193 Tgtwinscan_2721 - E2 domain; ubiquitin conjugating 97.8
3o2u_A190 NEDD8-conjugating enzyme UBC12; E2 conjugase, liga 97.8
1yh2_A169 HSPC150 protein similar to ubiquitin-conjugating e 97.8
2ucz_A165 UBC7, ubiquitin conjugating enzyme; ubiquitin conj 97.79
1tte_A215 Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq 97.78
1y8x_A160 Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju 97.78
2awf_A172 Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co 97.78
2e2c_A156 Ubiquitin conjugating enzyme; ubiquitin conjugatio 97.77
3rcz_B163 SUMO-conjugating enzyme UBC9; SUMO-like domain, pr 97.77
1c4z_D154 UBCH7, ubiquitin conjugating enzyme E2; bilobal st 97.76
2y9m_A172 Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra 97.76
1jat_A155 Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig 97.74
3e46_A253 Ubiquitin-conjugating enzyme E2-25 kDa; huntington 97.74
3bzh_A194 Ubiquitin-conjugating enzyme E2 E1; structural gen 97.74
2nvu_C180 NEDD8-conjugating enzyme UBC12; multifunction macr 97.73
2grr_A161 Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj 97.71
1i7k_A179 Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A 97.71
3fn1_B167 NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin 97.7
3rz3_A183 Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj 97.69
2gjd_A157 Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT 97.69
4ddg_A 399 Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI 97.51
4ds2_A167 Ubiquitin-conjugating enzyme E2, putative; structu 97.45
2q0v_A156 Ubiquitin-conjugating enzyme E2, putative; malaria 97.42
1jat_B138 Ubiquitin-conjugating enzyme variant MMS2; UEV, li 97.05
2a4d_A160 Ubiquitin-conjugating enzyme E2 variant 1; alterna 96.39
2hlw_A170 Ubiquitin-conjugating enzyme E2 variant 1; ubiquit 96.04
3ceg_A323 Baculoviral IAP repeat-containing protein 6; apopt 93.56
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Back     alignment and structure
Probab=98.16  E-value=7.5e-07  Score=77.88  Aligned_cols=42  Identities=38%  Similarity=0.561  Sum_probs=39.1

Q ss_pred             hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697          312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH  353 (367)
Q Consensus       312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~  353 (367)
                      -.|.|.|+|..||..+|++||.+|||+||||.|||.+|.+++
T Consensus        90 ~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~  131 (152)
T 2onu_A           90 QTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDK  131 (152)
T ss_dssp             HHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCH
T ss_pred             ccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCH
Confidence            469999999999998899999999999999999999998754
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Back     alignment and structure
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Back     alignment and structure
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Back     alignment and structure
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Back     alignment and structure
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Back     alignment and structure
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Back     alignment and structure
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Back     alignment and structure
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Back     alignment and structure
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica} Back     alignment and structure
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Back     alignment and structure
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Back     alignment and structure
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Back     alignment and structure
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Back     alignment and structure
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Back     alignment and structure
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A Back     alignment and structure
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Back     alignment and structure
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Back     alignment and structure
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Back     alignment and structure
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Back     alignment and structure
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Back     alignment and structure
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Back     alignment and structure
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1 Back     alignment and structure
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Back     alignment and structure
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Back     alignment and structure
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Back     alignment and structure
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Back     alignment and structure
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Back     alignment and structure
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Back     alignment and structure
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Back     alignment and structure
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Back     alignment and structure
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Back     alignment and structure
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Back     alignment and structure
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Back     alignment and structure
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Back     alignment and structure
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Back     alignment and structure
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Back     alignment and structure
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query367
d1fzya_149 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 97.78
d1y8xa1157 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 97.62
d1pzva_161 Ubiquitin conjugating enzyme, UBC {Nematode (Caeno 97.59
d2ucza_164 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 97.56
d2e2ca_156 Ubiquitin conjugating enzyme, UBC {Clam (Spisula s 97.54
d2f4za1161 Hypothetical protein Tgtwinscan_2721, E2 domain {T 97.53
d1yrva1148 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 97.49
d1jata_152 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 97.48
d2bepa1154 Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain 97.47
d1y6la_148 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 97.46
d2uyza1156 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 97.44
d1zdna1151 Ubiquitin conjugating enzyme, UBC {Human(Homo sapi 97.43
d1yf9a1158 Ubiquitin conjugating enzyme, UBC {Leishmania majo 97.4
d1i7ka_146 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 97.38
d1wzva1150 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 97.34
d1yh2a1154 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 97.31
d1j7db_149 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 97.3
d1z2ua1147 Ubiquitin conjugating enzyme, UBC {Caenorhabditis 97.28
d1ayza_153 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 97.26
d2z5da1152 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 97.23
d1z3da1149 Ubiquitin conjugating enzyme, UBC {Nematode (Caeno 97.23
d1c4zd_144 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 97.18
d2a4da1139 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 95.05
d2f4wa1157 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 87.66
d1jatb_136 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 82.08
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=97.78  E-value=4.6e-06  Score=70.02  Aligned_cols=42  Identities=19%  Similarity=0.025  Sum_probs=38.1

Q ss_pred             hhhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697          311 SFSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH  353 (367)
Q Consensus       311 ~~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~  353 (367)
                      --.|.|.+.|..|+.. |..||.+||++||||.|||.+|.++.
T Consensus        92 ~~~W~p~~ti~~il~~-i~~ll~~p~~~~p~n~eaa~~~~~~~  133 (149)
T d1fzya_          92 KNAWSPVITLKSALIS-LQALLQSPEPNDPQDAEVAQHYLRDR  133 (149)
T ss_dssp             TTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSSHHHHHHHHHCH
T ss_pred             cccCCCcCCHHHHHHH-HHHHHhCCCCCChhHHHHHHHHHHCH
Confidence            3469999999999985 99999999999999999999998754
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Back     information, alignment and structure
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Back     information, alignment and structure
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Back     information, alignment and structure
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Back     information, alignment and structure
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Back     information, alignment and structure
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Back     information, alignment and structure
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Back     information, alignment and structure
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Back     information, alignment and structure
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Back     information, alignment and structure
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Back     information, alignment and structure
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Back     information, alignment and structure
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Back     information, alignment and structure
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Back     information, alignment and structure
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Back     information, alignment and structure
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Back     information, alignment and structure
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Back     information, alignment and structure
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Back     information, alignment and structure
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Back     information, alignment and structure
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Back     information, alignment and structure
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Back     information, alignment and structure