Citrus Sinensis ID: 042717

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470----

ATQIEPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIKVKPETPEEFNSNKGVQSSRNLVNAQNSIAEKSNTTSQEEAISRFPMNWLQKLREKWPRIL

cccccccccccccccccccEEEEEEcccHHHHHHHHHHHHccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHHHccccEEEccccEEEEEccccccccccEEEccccccccHHHHcccccHHHHHcccccccccccHHHHHHHHHcccccccccccccccEEccccHHHHHHHHHccccccEEEcccccEEEEEccccccHHHHcccccccccEEEEEEEEccccEEEEEcccccccccccEEEEccccccccccccccEEEEEEEccccccccEEEEEEEEccccccEEEEEEcccccccccccEEEEEcccEEEEEEEEEEEEccccccccHHHHHHHHHcccccccccccEEEcccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHccccc

cccccccccccccccccccEEEEEccccccHHHHHHHHHHccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccEEEEcEEEEEEEcccccccccEEEEEcccccccHHHHHHHccHHHHHHHcccccccccHHHHHHHHHcccccccccccccEEEEccccHHHHHHHHcccccccEEEcccccEEcccccEEEEEcccccccccccccEEEEccccHccEEEEEccccccHHHHccEEEccEEEEccccccccEEEEEEEEEccccccEEEEEEEcccccccEEEEEEcccEEEEccccEEEEEcccEEcccHHHHHHHccccccHHHHHHHHHHHHccccccccEEEEEccccccccccccccEEcccccccHHEEHHHcccccHHHHHccccHHHHHHHHHHHHHHc

atqieprylscsmphqkgLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFEnfwtecpweedMKYAKAVCDqvdvplevvHLTDEYWKNVVSYIIEEyrcgrtpnpdvlcntriKFGAFMDAISSMEFDYVASGHYAkvvhssadqeykpsvLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFatqfdlpnkdrkdsqgicflgkiKFSEFVARHIGEMEGVILEAetgdflgkhwGFWFYTIGqrqglrlpggpwyvvekdvknnVVFVSRnyysfdkkrrlfrvgslkwlsglppeeisrlqckvrhgpgfyncnLMIEHVEDGGENIAVVQLseddqglaAGQFAAFyqgtrcigsgvileswddqgfpVCEKALEIARMEdksklgkpikikvkpetpeefnsnkgvqssrNLVNAQNsiaeksnttsQEEAISRFPMNWLQKLREKWPRIL

atqieprylscsmphqKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEyrcgrtpnpdvLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFAtqfdlpnkdrkdsqgICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVsrnyysfdkkrrlfrvgslkwlsglppEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESWDDQGFPVCEKALEIarmedksklgkpikikvkpetpeefnsnkgvqssrNLVNAQnsiaeksnttsqeeaisrfpmnwlqklrekwpril

**************HQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSS********VLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPN****DSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESWDDQGFPVCEKALEIA**************************************************************WL***********

*******************KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESWDDQGFPVCEKAL***************************************************************MNWLQKLREKWPRIL

ATQIEPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIKVKPE**************RNLVNAQNSIA**********AISRFPMNWLQKLREKWPRIL

*****PRYLSC*MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIKVKPETP*******GVQSS****NAQN************EAISRFPMNWLQKLREKWPRIL

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		474	2.2.26 [Sep-21-2011]
O51625		355	tRNA-specific 2-thiouridy	yes	no	0.740	0.988	0.460	1e-100
B7J2N7		355	tRNA-specific 2-thiouridy	yes	no	0.740	0.988	0.460	1e-99
Q0SMH1		355	tRNA-specific 2-thiouridy	yes	no	0.740	0.988	0.460	1e-99
Q660I8		355	tRNA-specific 2-thiouridy	yes	no	0.740	0.988	0.452	7e-98
B2S125		354	tRNA-specific 2-thiouridy	yes	no	0.740	0.991	0.472	8e-98
A1R0A7		354	tRNA-specific 2-thiouridy	yes	no	0.740	0.991	0.467	1e-97
B5RMM8		354	tRNA-specific 2-thiouridy	yes	no	0.740	0.991	0.456	1e-95
B5RQ24		354	tRNA-specific 2-thiouridy	yes	no	0.740	0.991	0.453	2e-95
Q5LFN5		353	tRNA-specific 2-thiouridy	yes	no	0.732	0.983	0.430	1e-76
Q8ABF5		355	tRNA-specific 2-thiouridy	yes	no	0.734	0.980	0.422	1e-76

>sp\|O51625\|MNMA_BORBU tRNA-specific 2-thiouridylase MnmA OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=mnmA PE=3 SV=1	Back alignment and function desciption

 Score =  364 bits (934), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 168/365 (46%), Positives = 250/365 (68%), Gaps = 14/365 (3%)

Query: 19  LKVAVLLSGGVDSSVAL-RLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
           +K+AVLLSGGVDSSVAL R+++    +   +YLKIW +++  ++   CPW+ED+ Y +A+
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDEL-SYIGNCPWQEDLNYVEAI 59

Query: 78  CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
           C++ +VP E+++   EY+  VVSY IEE + G TP+PD+ CN RIKFGAF + I+S ++D
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINS-QYD 118

Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
            V +GHYAK+    +       +L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYAKIQIKES-----KFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173

Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
           VR+ A   +LPNKDRKDSQGICFLGKIK++EF+  H+GE +G I+E ETG  +G H G+W
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYW 233

Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
           F+T+GQR+G++L  GPW+V+EKD++ N++++S N     + +R F V  + W++   P  
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND-TPTN 292

Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
               + K+RHG   Y+C L +        N+  + L++ DQG++ GQFA FY+ T C+G 
Sbjct: 293 FENFKIKIRHGEKKYSCKLKLI-----TNNLMEISLNKKDQGISPGQFAIFYKNTECLGG 347

Query: 378 GVILE 382
             I +
Sbjct: 348 AKIFK 352

Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) (taxid: 224326)
EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: -

>sp\|B7J2N7\|MNMA_BORBZ tRNA-specific 2-thiouridylase MnmA OS=Borrelia burgdorferi (strain ZS7) GN=mnmA PE=3 SV=1	Back alignment and function description

>sp\|Q0SMH1\|MNMA_BORAP tRNA-specific 2-thiouridylase MnmA OS=Borrelia afzelii (strain PKo) GN=mnmA PE=3 SV=1	Back alignment and function description

>sp\|Q660I8\|MNMA_BORGA tRNA-specific 2-thiouridylase MnmA OS=Borrelia garinii (strain PBi) GN=mnmA PE=3 SV=1	Back alignment and function description

>sp\|B2S125\|MNMA_BORHD tRNA-specific 2-thiouridylase MnmA OS=Borrelia hermsii (strain DAH) GN=mnmA PE=3 SV=2	Back alignment and function description

>sp\|A1R0A7\|MNMA_BORT9 tRNA-specific 2-thiouridylase MnmA OS=Borrelia turicatae (strain 91E135) GN=mnmA PE=3 SV=1	Back alignment and function description

>sp\|B5RMM8\|MNMA_BORDL tRNA-specific 2-thiouridylase MnmA OS=Borrelia duttonii (strain Ly) GN=mnmA PE=3 SV=1	Back alignment and function description

>sp\|B5RQ24\|MNMA_BORRA tRNA-specific 2-thiouridylase MnmA OS=Borrelia recurrentis (strain A1) GN=mnmA PE=3 SV=1	Back alignment and function description

>sp\|Q5LFN5\|MNMA2_BACFN tRNA-specific 2-thiouridylase MnmA 2 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=mnmA2 PE=3 SV=1	Back alignment and function description

>sp\|Q8ABF5\|MNMA1_BACTN tRNA-specific 2-thiouridylase MnmA 1 OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=mnmA1 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		474
297746327		544	unnamed protein product [Vitis vinifera]	0.983	0.856	0.816	0.0
225435460		540	PREDICTED: tRNA-specific 2-thiouridylase	0.983	0.862	0.816	0.0
449448726		538	PREDICTED: tRNA-specific 2-thiouridylase	0.983	0.866	0.786	0.0
255544898		497	tRNA (5-methylaminomethyl-2-thiouridylat	0.928	0.885	0.809	0.0
356541193		488	PREDICTED: tRNA-specific 2-thiouridylase	0.877	0.852	0.817	0.0
224055025		434	predicted protein [Populus trichocarpa]	0.900	0.983	0.794	0.0
145336613		497	tRNA (5-methylaminomethyl-2-thiouridylat	0.907	0.865	0.772	0.0
297852856		500	tRNA (5-methylaminomethyl-2-thiouridylat	0.900	0.854	0.782	0.0
62320516		497	hypothetical protein [Arabidopsis thalia	0.907	0.865	0.770	0.0
4836940		421	Unknown protein [Arabidopsis thaliana] g	0.888	1.0	0.774	0.0

>gi\|297746327\|emb\|CBI16383.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/468 (81%), Positives = 421/468 (89%), Gaps = 2/468 (0%)

Query: 8   YLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPW 67
           YLSCS+P+ + LK+AVLLSGGVDSSVALRLLH+AGHSCTAFYLKIWFQEDFENFW+ECPW
Sbjct: 78  YLSCSLPNNR-LKIAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPW 136

Query: 68  EEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAF 127
           E+D+KYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAF
Sbjct: 137 EDDLKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAF 196

Query: 128 MDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLI 187
           MDAISS EFDYVASGHYA VVHS  DQ  KPSVLELSKD VKDQTYFLSHLSQ QLKRLI
Sbjct: 197 MDAISSKEFDYVASGHYANVVHSFTDQMDKPSVLELSKDMVKDQTYFLSHLSQIQLKRLI 256

Query: 188 FPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETG 247
           FPLGCI K+EVR  AT+ DLPN+DRKDSQGICFLGKIKFSEFVARHIGE EG+ILEAETG
Sbjct: 257 FPLGCIPKDEVRSLATKLDLPNRDRKDSQGICFLGKIKFSEFVARHIGEKEGIILEAETG 316

Query: 248 DFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
           D LGKH GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNY+S DK+RRLFRVGSL
Sbjct: 317 DLLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSLDKRRRLFRVGSL 376

Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
           KW+S  PP +I++LQCKVRHGPGFYNC+  +E  EDG E++AVVQLSEDDQGLAAGQF A
Sbjct: 377 KWISREPPGQINQLQCKVRHGPGFYNCSFTMEPGEDGHEDVAVVQLSEDDQGLAAGQFTA 436

Query: 368 FYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIKVKPETPEEFNSN- 426
           FYQG  CIGSGVILESWDDQGFPVC KALEIARMEDKSKLGKP+KIKV+PETP + +   
Sbjct: 437 FYQGRSCIGSGVILESWDDQGFPVCAKALEIARMEDKSKLGKPVKIKVRPETPPKGSDQI 496

Query: 427 KGVQSSRNLVNAQNSIAEKSNTTSQEEAISRFPMNWLQKLREKWPRIL 474
            G++  R L N+Q ++ ++ + +S+ EA SRFPMNWLQK+REKW ++L
Sbjct: 497 DGIKLDRELANSQAAVTDEISRSSEGEARSRFPMNWLQKIREKWLQML 544

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225435460\|ref\|XP_002282827.1\| PREDICTED: tRNA-specific 2-thiouridylase mnmA-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449448726\|ref\|XP_004142116.1\| PREDICTED: tRNA-specific 2-thiouridylase MnmA-like [Cucumis sativus] gi\|449524848\|ref\|XP_004169433.1\| PREDICTED: tRNA-specific 2-thiouridylase MnmA-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255544898\|ref\|XP_002513510.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis] gi\|223547418\|gb\|EEF48913.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356541193\|ref\|XP_003539065.1\| PREDICTED: tRNA-specific 2-thiouridylase mnmA-like [Glycine max]	Back alignment and taxonomy information

>gi\|224055025\|ref\|XP_002298404.1\| predicted protein [Populus trichocarpa] gi\|222845662\|gb\|EEE83209.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|145336613\|ref\|NP_175542.2\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arabidopsis thaliana] gi\|332194528\|gb\|AEE32649.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297852856\|ref\|XP_002894309.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arabidopsis lyrata subsp. lyrata] gi\|297340151\|gb\|EFH70568.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|62320516\|dbj\|BAD95081.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|4836940\|gb\|AAD30642.1\|AC006085_15 Unknown protein [Arabidopsis thaliana] gi\|119935887\|gb\|ABM06024.1\| At1g51310 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		474
TAIR\|locus:2008291		497	AT1G51310 "AT1G51310" [Arabido	0.905	0.863	0.779	4.4e-187
TIGR_CMR\|SO_2633		372	SO_2633 "tRNA (5-methylaminome	0.746	0.951	0.382	6.9e-63
UNIPROTKB\|Q9KSX8		372	mnmA "tRNA-specific 2-thiourid	0.738	0.940	0.382	3.8e-62
TIGR_CMR\|VC_1128		372	VC_1128 "tRNA (5-methylaminome	0.738	0.940	0.382	3.8e-62
UNIPROTKB\|P25745		368	mnmA "tRNA-specific 2-thiourid	0.723	0.932	0.384	5.5e-61
TIGR_CMR\|BA_4625		371	BA_4625 "tRNA (5-methylaminome	0.740	0.946	0.370	1.9e-60
TIGR_CMR\|CPS_2900		375	CPS_2900 "tRNA (5-methylaminom	0.729	0.922	0.373	2.4e-60
UNIPROTKB\|O75648		421	TRMU "Mitochondrial tRNA-speci	0.445	0.501	0.382	3.8e-58
UNIPROTKB\|E2QS09		421	TRMU "Uncharacterized protein"	0.445	0.501	0.373	2.6e-57
UNIPROTKB\|F6V9U0		425	TRMU "Uncharacterized protein"	0.445	0.496	0.373	2.6e-57

TAIR\|locus:2008291 AT1G51310 "AT1G51310" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1814 (643.6 bits), Expect = 4.4e-187, P = 4.4e-187
 Identities = 340/436 (77%), Positives = 378/436 (86%)

Query:     4 IEPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWT 63
             I  +YLSCSMP +K L+VAVLLSGGVDSSVALRLLH+AGHSCTAFYLKIWFQE FENFW 
Sbjct:    68 IVDQYLSCSMP-EKPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWN 126

Query:    64 ECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIK 123
             +CPWE+D+KYAK VC+QVDVPLEVVHLTDEYW+ VVSYIIEEYRCGRTPNPDVLCNTRIK
Sbjct:   127 QCPWEDDLKYAKHVCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIK 186

Query:   124 FGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQL 183
             FGAFMDAIS ME+DYV SGHYAKVVH  ADQ    SVLELS+D VKDQTYFLSHLSQ QL
Sbjct:   187 FGAFMDAISDMEYDYVGSGHYAKVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQL 246

Query:   184 KRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILE 243
             KRL+FPLGC+ K+EVRK ATQFDLPNKDRKDSQGICFLGKIKFS+FV RHIGEMEG+ILE
Sbjct:   247 KRLLFPLGCVKKDEVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGEMEGIILE 306

Query:   244 AETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR 303
             AE+GDFLG H GFWFYTIGQRQGLRLPGGPWYVVEKD KNNVVFVSRNYYS DK+RR+FR
Sbjct:   307 AESGDFLGNHRGFWFYTIGQRQGLRLPGGPWYVVEKDTKNNVVFVSRNYYSIDKRRRIFR 366

Query:   304 VGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAG 363
             VGSL+W SG P  ++  L+CKVRHGPGFY+C+  +E   DG  ++AVV L EDDQGLAAG
Sbjct:   367 VGSLRWNSGKPSGKVRELRCKVRHGPGFYSCSFEMEG--DG--DVAVVHLDEDDQGLAAG 422

Query:   364 QFAAFYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIKVKPETPEEF 423
             QFAAFY+GT CIGSGVILESWDDQ FPVC KAL++A +EDK+KLGKP+KI   P T    
Sbjct:   423 QFAAFYEGTTCIGSGVILESWDDQCFPVCAKALQLAALEDKTKLGKPVKIMTMP-TMSSV 481

Query:   424 NSNKGVQSS-RNLVNA 438
              ++ G  S+ + LVNA
Sbjct:   482 EADTGEASAEQKLVNA 497

GO:0004808 "tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0006396 "RNA processing" evidence=ISS

GO:0008033 "tRNA processing" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016740 "transferase activity" evidence=IEA

TIGR_CMR\|SO_2633 SO_2633 "tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KSX8 mnmA "tRNA-specific 2-thiouridylase MnmA" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_1128 VC_1128 "tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

UNIPROTKB\|P25745 mnmA "tRNA-specific 2-thiouridylase" [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_4625 BA_4625 "tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_2900 CPS_2900 "tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

UNIPROTKB\|O75648 TRMU "Mitochondrial tRNA-specific 2-thiouridylase 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QS09 TRMU "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F6V9U0 TRMU "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.8.1	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024614001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (536 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00015270001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (752 aa)	•	•		•	0.891
	GSVIVG00017707001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (381 aa)	•			•	0.861
	GSVIVG00011471001	SubName- Full=Chromosome undetermined scaffold_310, whole genome shotgun sequence; (454 aa)	•			•	0.828
	GSVIVG00006007001	SubName- Full=Chromosome chr4 scaffold_162, whole genome shotgun sequence; (796 aa)	•		•	•	0.826
	GSVIVG00036866001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (471 aa)	•		•	•	0.776
	GSVIVG00037524001	SubName- Full=Chromosome undetermined scaffold_89, whole genome shotgun sequence; (396 aa)	•			•	0.767
	GSVIVG00019724001	RecName- Full=Pseudouridylate synthase; EC=5.4.99.-; (304 aa)			•	•	0.755
	GSVIVG00002729001	SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (155 aa)	•			•	0.750
	GSVIVG00018292001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (253 aa)	•		•	•	0.742
	GSVIVG00038605001	SubName- Full=Chromosome chr3 scaffold_95, whole genome shotgun sequence; (468 aa)	•		•	•	0.710

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		474
pfam03054		355	pfam03054, tRNA_Me_trans, tRNA methyl transferase	1e-169
cd01998		349	cd01998, tRNA_Me_trans, tRNA methyl transferase	1e-155
PRK00143		346	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA	1e-143
TIGR00420		352	TIGR00420, trmU, tRNA (5-methylaminomethyl-2-thiou	1e-127
COG0482		356	COG0482, TrmU, Predicted tRNA(5-methylaminomethyl-	1e-124
PRK14665		360	PRK14665, mnmA, tRNA-specific 2-thiouridylase MnmA	3e-36
PRK14664		362	PRK14664, PRK14664, tRNA-specific 2-thiouridylase	8e-36
COG0037		298	COG0037, MesJ, tRNA(Ile)-lysidine synthase MesJ [C	8e-08
cd01990		202	cd01990, Alpha_ANH_like_I, This is a subfamily of	1e-07
cd01991		269	cd01991, Asn_Synthase_B_C, The C-terminal domain o	8e-06
cd01986		103	cd01986, Alpha_ANH_like, Adenine nucleotide alpha	6e-05
cd01993		185	cd01993, Alpha_ANH_like_II, This is a subfamily of	7e-05
COG0175		261	COG0175, CysH, 3'-phosphoadenosine 5'-phosphosulfa	9e-05
pfam00733		195	pfam00733, Asn_synthase, Asparagine synthase	6e-04
TIGR02432		189	TIGR02432, lysidine_TilS_N, tRNA(Ile)-lysidine syn	0.002
cd01713		173	cd01713, PAPS_reductase, This domain is found in p	0.003
COG0367		542	COG0367, AsnB, Asparagine synthase (glutamine-hydr	0.004

>gnl\|CDD\|217339 pfam03054, tRNA_Me_trans, tRNA methyl transferase	Back alignment and domain information

 Score =  479 bits (1236), Expect = e-169
 Identities = 166/366 (45%), Positives = 220/366 (60%), Gaps = 15/366 (4%)

Query: 19  LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
           +KV V +SGGVDSSVA  LL   G+     ++K W  ++ +     C  EED+  A+ VC
Sbjct: 1   MKVVVAMSGGVDSSVAAYLLKEQGYEVIGVFMKNW--DEEDEEGHGCCSEEDLADAQRVC 58

Query: 79  DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFD 137
           +Q+ +PL VV+   EYW+ V    ++EY+ GRTPNPD+LCN  IKFGA +D A  ++  D
Sbjct: 59  EQLGIPLYVVNFEKEYWEKVFEPFLDEYKNGRTPNPDILCNREIKFGALLDYAKENLGAD 118

Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
           Y+A+GHYA+V  +    E   S L   KDK KDQ+YFLS LSQ QL +L+FPLG ++KEE
Sbjct: 119 YLATGHYARVSLN----EDGESELLRGKDKNKDQSYFLSTLSQEQLAKLLFPLGELTKEE 174

Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
           VRK A +  LP   +KDSQGICF+GK  F +F+ R++    G I++ +TG+ LG+H G W
Sbjct: 175 VRKIAKEAGLPTAKKKDSQGICFIGKRNFKDFLKRYLPVKPGDIIDIDTGEVLGEHEGIW 234

Query: 258 FYTIGQRQGLRLPG--GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG-LP 314
           FYTIGQR+GL + G   PWYVVEKD +NN V+V R +   D      R   L WL   LP
Sbjct: 235 FYTIGQRKGLGIGGYGEPWYVVEKDPENNTVYVGRGHDHEDLYSDGLRAKDLNWLGPELP 294

Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
             E  R   KVRH      C      V+   +N   V   E  + +  GQ A FY G RC
Sbjct: 295 TGETLRCTVKVRHRQPPVPC-----KVKLLDDNTIEVHFDEPVRAVTPGQAAVFYDGDRC 349

Query: 375 IGSGVI 380
           +G G+I
Sbjct: 350 LGGGII 355

This family represents tRNA(5-methylaminomethyl-2-thiouridine)- methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. Length = 355

>gnl\|CDD\|238956 cd01998, tRNA_Me_trans, tRNA methyl transferase	Back alignment and domain information

>gnl\|CDD\|234664 PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	Back alignment and domain information

>gnl\|CDD\|232968 TIGR00420, trmU, tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	Back alignment and domain information

>gnl\|CDD\|223558 COG0482, TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|173128 PRK14665, mnmA, tRNA-specific 2-thiouridylase MnmA; Provisional	Back alignment and domain information

>gnl\|CDD\|173127 PRK14664, PRK14664, tRNA-specific 2-thiouridylase MnmA; Provisional	Back alignment and domain information

>gnl\|CDD\|223115 COG0037, MesJ, tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|238948 cd01990, Alpha_ANH_like_I, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>gnl\|CDD\|238949 cd01991, Asn_Synthase_B_C, The C-terminal domain of Asparagine Synthase B	Back alignment and domain information

>gnl\|CDD\|238944 cd01986, Alpha_ANH_like, Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases	Back alignment and domain information

>gnl\|CDD\|238951 cd01993, Alpha_ANH_like_II, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>gnl\|CDD\|223253 COG0175, CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|216090 pfam00733, Asn_synthase, Asparagine synthase	Back alignment and domain information

>gnl\|CDD\|233864 TIGR02432, lysidine_TilS_N, tRNA(Ile)-lysidine synthetase, N-terminal domain	Back alignment and domain information

>gnl\|CDD\|238846 cd01713, PAPS_reductase, This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase	Back alignment and domain information

>gnl\|CDD\|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		474
PF03054		356	tRNA_Me_trans: tRNA methyl transferase; InterPro:	100.0
COG0482		356	TrmU Predicted tRNA(5-methylaminomethyl-2-thiourid	100.0
KOG2805		377	consensus tRNA (5-methylaminomethyl-2-thiouridylat	100.0
PRK14665		360	mnmA tRNA-specific 2-thiouridylase MnmA; Provision	100.0
TIGR00420		352	trmU tRNA (5-methylaminomethyl-2-thiouridylate)-me	100.0
PRK14664		362	tRNA-specific 2-thiouridylase MnmA; Provisional	100.0
PRK00143		346	mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed	100.0
cd01998		349	tRNA_Me_trans tRNA methyl transferase. This family	100.0
PRK00509		399	argininosuccinate synthase; Provisional	99.95
PRK08384		381	thiamine biosynthesis protein ThiI; Provisional	99.93
PRK04527		400	argininosuccinate synthase; Provisional	99.93
PRK13820		394	argininosuccinate synthase; Provisional	99.93
PF01171		182	ATP_bind_3: PP-loop family; InterPro: IPR011063 Th	99.92
TIGR02432		189	lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t	99.92
cd01992		185	PP-ATPase N-terminal domain of predicted ATPase of	99.92
cd01993		185	Alpha_ANH_like_II This is a subfamily of Adenine n	99.92
TIGR00268		252	conserved hypothetical protein TIGR00268. The N-te	99.9
COG0037		298	MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle	99.9
cd01997		295	GMP_synthase_C The C-terminal domain of GMP synthe	99.9
PRK10696		258	tRNA 2-thiocytidine biosynthesis protein TtcA; Pro	99.9
cd01712		177	ThiI ThiI is required for thiazole synthesis in th	99.89
PLN00200		404	argininosuccinate synthase; Provisional	99.89
PRK08349		198	hypothetical protein; Validated	99.89
cd01990		202	Alpha_ANH_like_I This is a subfamily of Adenine nu	99.89
PRK00074		511	guaA GMP synthase; Reviewed	99.87
cd01999		385	Argininosuccinate_Synthase Argininosuccinate synth	99.87
TIGR00342		371	thiazole biosynthesis/tRNA modification protein Th	99.85
TIGR00884		311	guaA_Cterm GMP synthase (glutamine-hydrolyzing), C	99.85
PRK10660		436	tilS tRNA(Ile)-lysidine synthetase; Provisional	99.84
PRK00919		307	GMP synthase subunit B; Validated	99.84
TIGR00032		394	argG argininosuccinate synthase. argG in bacteria,	99.84
COG1606		269	ATP-utilizing enzymes of the PP-loop superfamily [	99.84
TIGR00552		250	nadE NAD+ synthetase. NAD+ synthetase is a nearly	99.83
PRK01565		394	thiamine biosynthesis protein ThiI; Provisional	99.83
PRK14561		194	hypothetical protein; Provisional	99.82
PF02568		197	ThiI: Thiamine biosynthesis protein (ThiI); InterP	99.8
TIGR00364		201	exsB protein. This protein family is represented b	99.8
PLN02347		536	GMP synthetase	99.79
PRK11106		231	queuosine biosynthesis protein QueC; Provisional	99.77
cd00553		248	NAD_synthase NAD+ synthase is a homodimer, which c	99.76
cd01713		173	PAPS_reductase This domain is found in phosphoaden	99.76
cd01995		169	ExsB ExsB is a transcription regulator related pro	99.75
PRK13980		265	NAD synthetase; Provisional	99.75
PRK01269		482	tRNA s(4)U8 sulfurtransferase; Provisional	99.72
PF06508		209	QueC: Queuosine biosynthesis protein QueC; InterPr	99.7
COG0603		222	Predicted PP-loop superfamily ATPase [General func	99.69
COG0137		403	ArgG Argininosuccinate synthase [Amino acid transp	99.67
PRK05370		447	argininosuccinate synthase; Validated	99.67
PRK05253		301	sulfate adenylyltransferase subunit 2; Provisional	99.65
cd01994		194	Alpha_ANH_like_IV This is a subfamily of Adenine n	99.6
PF00764		388	Arginosuc_synth: Arginosuccinate synthase; InterPr	99.59
cd01996		154	Alpha_ANH_like_III This is a subfamily of Adenine	99.59
TIGR03679		218	arCOG00187 arCOG00187 universal archaeal metal-bin	99.56
PRK00876		326	nadE NAD synthetase; Reviewed	99.55
PF02540		242	NAD_synthase: NAD synthase; InterPro: IPR022310 NA	99.54
PRK08576		438	hypothetical protein; Provisional	99.52
COG0301		383	ThiI Thiamine biosynthesis ATP pyrophosphatase [Co	99.51
TIGR02039		294	CysD sulfate adenylyltransferase, small subunit. I	99.51
TIGR03573		343	WbuX N-acetyl sugar amidotransferase. This enzyme	99.49
TIGR00289		222	conserved hypothetical protein TIGR00289. Homologo	99.49
PRK02090		241	phosphoadenosine phosphosulfate reductase; Provisi	99.48
COG0519		315	GuaA GMP synthase, PP-ATPase domain/subunit [Nucle	99.45
PRK13981		540	NAD synthetase; Provisional	99.43
cd01986		103	Alpha_ANH_like Adenine nucleotide alpha hydrolases	99.39
PRK12563		312	sulfate adenylyltransferase subunit 2; Provisional	99.39
COG2117		198	Predicted subunit of tRNA(5-methylaminomethyl-2-th	99.38
PTZ00323		294	NAD+ synthase; Provisional	99.37
PF01507		174	PAPS_reduct: Phosphoadenosine phosphosulfate reduc	99.37
KOG1706		412	consensus Argininosuccinate synthase [Amino acid t	99.36
PRK02628		679	nadE NAD synthetase; Reviewed	99.32
PRK00768		268	nadE NAD synthetase; Reviewed	99.32
COG1365		255	Predicted ATPase (PP-loop superfamily) [General fu	99.27
TIGR00290		223	MJ0570_dom MJ0570-related uncharacterized domain.	99.22
COG0171		268	NadE NAD synthase [Coenzyme metabolism]	99.18
PRK08557		417	hypothetical protein; Provisional	99.14
cd01991		269	Asn_Synthase_B_C The C-terminal domain of Asparagi	99.12
KOG2840		347	consensus Uncharacterized conserved protein with s	99.1
TIGR00434		212	cysH phosophoadenylyl-sulfate reductase (thioredox	99.1
PRK13794		479	hypothetical protein; Provisional	99.09
COG0175		261	CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotr	99.03
PF01902		218	ATP_bind_4: ATP-binding region; InterPro: IPR00276	99.01
PRK13795		636	hypothetical protein; Provisional	98.99
TIGR02057		226	PAPS_reductase phosphoadenosine phosphosulfate red	98.96
KOG1622		552	consensus GMP synthase [Nucleotide transport and m	98.94
PF00733		255	Asn_synthase: Asparagine synthase; InterPro: IPR00	98.92
COG2102		223	Predicted ATPases of PP-loop superfamily [General	98.87
TIGR01536		467	asn_synth_AEB asparagine synthase (glutamine-hydro	98.85
PLN02339		700	NAD+ synthase (glutamine-hydrolysing)	98.69
PRK06850		507	hypothetical protein; Provisional	98.48
TIGR03183		447	DNA_S_dndC putative sulfurtransferase DndC. Member	98.43
cd01984		86	AANH_like Adenine nucleotide alpha hydrolases supe	98.33
PTZ00077		586	asparagine synthetase-like protein; Provisional	98.25
PRK09431		554	asnB asparagine synthetase B; Provisional	98.23
TIGR02055		191	APS_reductase thioredoxin-dependent adenylylsulfat	98.2
PLN02549		578	asparagine synthase (glutamine-hydrolyzing)	98.19
TIGR03104		589	trio_amidotrans asparagine synthase family amidotr	98.05
TIGR00424		463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	98.02
TIGR03108		628	eps_aminotran_1 exosortase 1 system-associated ami	98.0
PLN02309		457	5'-adenylylsulfate reductase	97.99
PF02677		176	DUF208: Uncharacterized BCR, COG1636; InterPro: IP	97.98
COG0367		542	AsnB Asparagine synthase (glutamine-hydrolyzing) [	97.96
KOG0571		543	consensus Asparagine synthase (glutamine-hydrolyzi	97.71
KOG2594		396	consensus Uncharacterized conserved protein [Funct	97.35
COG1636		204	Uncharacterized protein conserved in bacteria [Fun	97.18
KOG2316		277	consensus Predicted ATPase (PP-loop superfamily) [	95.83
COG3969		407	Predicted phosphoadenosine phosphosulfate sulfotra	95.73
KOG0573		520	consensus Asparagine synthase [Amino acid transpor	93.25
KOG0189		261	consensus Phosphoadenosine phosphosulfate reductas	92.61
TIGR00269		104	conserved hypothetical protein TIGR00269.	90.77
cd01987		124	USP_OKCHK USP domain is located between the N-term	90.13
KOG2303		706	consensus Predicted NAD synthase, contains CN hydr	89.97
cd03706		93	mtEFTU_III Domain III of mitochondrial EF-TU (mtEF	86.35
PTZ00327		460	eukaryotic translation initiation factor 2 gamma s	86.17
cd04094		97	selB_III This family represents the domain of elon	85.85
cd03707		90	EFTU_III Domain III of elongation factor (EF) Tu.	84.37
PRK10490		895	sensor protein KdpD; Provisional	84.06
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	83.55
TIGR03680		406	eif2g_arch translation initiation factor 2 subunit	80.92
cd01989		146	STK_N The N-terminal domain of Eukaryotic Serine T	80.33

>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34	Back alignment and domain information

Probab=100.00  E-value=2.1e-102  Score=795.89  Aligned_cols=352  Identities=42%  Similarity=0.709  Sum_probs=281.7

Q ss_pred             CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhh
Q 042717           19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNV   98 (474)
Q Consensus        19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V   98 (474)
                      |||+|||||||||||||+||+++||+|+|+||.+|+.++...  ..|++.+++++|+++|++|||||+++|++++||+.|
T Consensus         1 ~kV~vamSGGVDSsvaA~LLk~~G~~V~Gv~m~~~~~~~~~~--~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~~V   78 (356)
T PF03054_consen    1 KKVLVAMSGGVDSSVAAALLKEQGYDVIGVTMRNWDEEDESG--KSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWEEV   78 (356)
T ss_dssp             -EEEEE--SSHHHHHHHHHHHHCT-EEEEEEEE-SS-SSSHH---HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHHHT
T ss_pred             CeEEEEccCCHHHHHHHHHHHhhcccceEEEEEEeccccccC--CCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence            689999999999999999999999999999999997643221  358889999999999999999999999999999999


Q ss_pred             HhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHH-cCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccc
Q 042717           99 VSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISS-MEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSH  177 (474)
Q Consensus        99 ~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~-~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~  177 (474)
                      +++|+++|..|+|||||+.||+.|||++|+++|.+ +|+++|||||||++...   +..+.+.|.++.|..|||||||+.
T Consensus        79 i~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~---~~~~~~~L~r~~D~~KDQSYfL~~  155 (356)
T PF03054_consen   79 IEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKD---EKNGRYRLLRGADPKKDQSYFLSR  155 (356)
T ss_dssp             HHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEE---S-TTEEEEEE-SSTTC--GGGGTT
T ss_pred             HHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEee---ccCCceEEEecCCCCCCceEEEEe
Confidence            99999999999999999999999999999999999 99999999999998642   124567899999999999999999


Q ss_pred             cChhhhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccccccchHHHHHhhhccCCCcEEeccCCceeeeeccee
Q 042717          178 LSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW  257 (474)
Q Consensus       178 L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl~~~~~~~fL~~~~~~~~G~ivd~~~g~~lG~H~G~~  257 (474)
                      |++++|.+++|||++++|+|||++|+++||+.++++||||+||+++++|++||+++++..||+|+|.++|++||+|+|+|
T Consensus       156 l~~~~L~~~~FPLG~~~K~eVR~iA~~~gl~~a~k~eSq~iCFi~~~~~~~fl~~~~~~~~G~ivd~~tG~vlG~H~G~~  235 (356)
T PF03054_consen  156 LPQEQLSRLIFPLGELTKEEVREIAREAGLPVAEKKESQGICFIGDGDYREFLKRYLPEKPGPIVDIDTGKVLGEHKGIH  235 (356)
T ss_dssp             --HHHHCCEE-TCCCS-HHHHHHHHHHCT-TTTT-----SSTTTCCCHHHHHHCTTS----EEEEETT-S-EEEEES-CC
T ss_pred             cCHHHHHhhcCCCCCCCHHHHHHHHHhcCCcccCccccceEEEecCCcHHHhhhhccccccCcccccccceeeeeccCee
Confidence            99999999999999999999999999999999999999999999999999999999998999999975599999999999


Q ss_pred             eEeecccccCCCC--CceEEEEEEecCCCeEEEecCCCCccceeeEEEEcceeeccCCCcc-cccceeeeeccCCCccce
Q 042717          258 FYTIGQRQGLRLP--GGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE-EISRLQCKVRHGPGFYNC  334 (474)
Q Consensus       258 ~yTiGQR~Gl~i~--~~p~yVv~~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~~~~-~~~~~~~kiR~~~~~~~c  334 (474)
                      +|||||||||+++  ++||||++||+++|+|+|+++.+.++|+++.+.+.++||+....+. .+.++.+|+||++++.+|
T Consensus       236 ~yTiGQRkGlgi~g~~~p~yV~~id~~~N~V~Vg~g~~~~~L~~~~~~~~~~~w~~~~~~~~~~~~~~vkiR~~~~~~~~  315 (356)
T PF03054_consen  236 FYTIGQRKGLGIAGYGEPLYVVEIDPETNTVVVGPGYDHEDLFSREFTVEDFNWISPELPDGNPLECQVKIRYRQKPVPC  315 (356)
T ss_dssp             C--TT-BTTTTTT-TSS-EEEEEEECCCTEEEEEESTT-GGGEEEEEEEECEEETT-S--SSCEEEEEEESSTTS--EEE
T ss_pred             eEccCCCCCCCCCCCCCeEEEEEEecCCCEEEEeCCcChHHHccCEEEEEeeeeccccCcccCceEEEEEEccCCCCCCE
Confidence            9999999999999  6899999999999999999977677899999999999999864443 467899999999999999


Q ss_pred             EEEEeeeecCCCCEEEEEecCCccCCCCCceEEEEeCCEEEEeeEE
Q 042717          335 NLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI  380 (474)
Q Consensus       335 ~v~~~~~~~~~~~~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I  380 (474)
                      +++..     +++.++|+|++||+||||||+||||++|+|||||+|
T Consensus       316 ~v~~~-----~~~~~~V~f~eP~~avaPGQ~aVfY~~d~vLGgG~I  356 (356)
T PF03054_consen  316 TVEPI-----GDGRLRVEFDEPQRAVAPGQSAVFYDGDRVLGGGII  356 (356)
T ss_dssp             EEEE------SSS-EEEEEEEEEET--TTSEEEEEETTEEEEEEEE
T ss_pred             EEEEe-----cCCeEEEEeCCCCCCCCCCcEEEEEECCEEEEEEEC
Confidence            99886     456899999999999999999999999999999998

; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.

>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional	Back alignment and domain information

>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	Back alignment and domain information

>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional	Back alignment and domain information

>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed	Back alignment and domain information

>cd01998 tRNA_Me_trans tRNA methyl transferase	Back alignment and domain information

>PRK00509 argininosuccinate synthase; Provisional	Back alignment and domain information

>PRK08384 thiamine biosynthesis protein ThiI; Provisional	Back alignment and domain information

>PRK04527 argininosuccinate synthase; Provisional	Back alignment and domain information

>PRK13820 argininosuccinate synthase; Provisional	Back alignment and domain information

>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]	Back alignment and domain information

>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain	Back alignment and domain information

>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	Back alignment and domain information

>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>TIGR00268 conserved hypothetical protein TIGR00268	Back alignment and domain information

>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase	Back alignment and domain information

>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	Back alignment and domain information

>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway	Back alignment and domain information

>PLN00200 argininosuccinate synthase; Provisional	Back alignment and domain information

>PRK08349 hypothetical protein; Validated	Back alignment and domain information

>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>PRK00074 guaA GMP synthase; Reviewed	Back alignment and domain information

>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase	Back alignment and domain information

>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI	Back alignment and domain information

>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit	Back alignment and domain information

>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional	Back alignment and domain information

>PRK00919 GMP synthase subunit B; Validated	Back alignment and domain information

>TIGR00032 argG argininosuccinate synthase	Back alignment and domain information

>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]	Back alignment and domain information

>TIGR00552 nadE NAD+ synthetase	Back alignment and domain information

>PRK01565 thiamine biosynthesis protein ThiI; Provisional	Back alignment and domain information

>PRK14561 hypothetical protein; Provisional	Back alignment and domain information

>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell	Back alignment and domain information

>TIGR00364 exsB protein	Back alignment and domain information

>PLN02347 GMP synthetase	Back alignment and domain information

>PRK11106 queuosine biosynthesis protein QueC; Provisional	Back alignment and domain information

>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD)	Back alignment and domain information

>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase	Back alignment and domain information

>cd01995 ExsB ExsB is a transcription regulator related protein	Back alignment and domain information

>PRK13980 NAD synthetase; Provisional	Back alignment and domain information

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional	Back alignment and domain information

>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome	Back alignment and domain information

>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]	Back alignment and domain information

>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK05370 argininosuccinate synthase; Validated	Back alignment and domain information

>PRK05253 sulfate adenylyltransferase subunit 2; Provisional	Back alignment and domain information

>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6	Back alignment and domain information

>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK00876 nadE NAD synthetase; Reviewed	Back alignment and domain information

>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6	Back alignment and domain information

>PRK08576 hypothetical protein; Provisional	Back alignment and domain information

>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]	Back alignment and domain information

>TIGR02039 CysD sulfate adenylyltransferase, small subunit	Back alignment and domain information

>TIGR03573 WbuX N-acetyl sugar amidotransferase	Back alignment and domain information

>TIGR00289 conserved hypothetical protein TIGR00289	Back alignment and domain information

>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional	Back alignment and domain information

>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK13981 NAD synthetase; Provisional	Back alignment and domain information

>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases	Back alignment and domain information

>PRK12563 sulfate adenylyltransferase subunit 2; Provisional	Back alignment and domain information

>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PTZ00323 NAD+ synthase; Provisional	Back alignment and domain information

>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase	Back alignment and domain information

>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK02628 nadE NAD synthetase; Reviewed	Back alignment and domain information

>PRK00768 nadE NAD synthetase; Reviewed	Back alignment and domain information

>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]	Back alignment and domain information

>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain	Back alignment and domain information

>COG0171 NadE NAD synthase [Coenzyme metabolism]	Back alignment and domain information

>PRK08557 hypothetical protein; Provisional	Back alignment and domain information

>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B	Back alignment and domain information

>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]	Back alignment and domain information

>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin)	Back alignment and domain information

>PRK13794 hypothetical protein; Provisional	Back alignment and domain information

>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal	Back alignment and domain information

>PRK13795 hypothetical protein; Provisional	Back alignment and domain information

>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent	Back alignment and domain information

>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]	Back alignment and domain information

>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO)	Back alignment and domain information

>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]	Back alignment and domain information

>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing)	Back alignment and domain information

>PLN02339 NAD+ synthase (glutamine-hydrolysing)	Back alignment and domain information

>PRK06850 hypothetical protein; Provisional	Back alignment and domain information

>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC	Back alignment and domain information

>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF)	Back alignment and domain information

>PTZ00077 asparagine synthetase-like protein; Provisional	Back alignment and domain information

>PRK09431 asnB asparagine synthetase B; Provisional	Back alignment and domain information

>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase	Back alignment and domain information

>PLN02549 asparagine synthase (glutamine-hydrolyzing)	Back alignment and domain information

>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase	Back alignment and domain information

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent	Back alignment and domain information

>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1	Back alignment and domain information

>PLN02309 5'-adenylylsulfate reductase	Back alignment and domain information

>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function	Back alignment and domain information

>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	Back alignment and domain information

>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	Back alignment and domain information

>KOG2594 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]	Back alignment and domain information

>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]	Back alignment and domain information

>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]	Back alignment and domain information

>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00269 conserved hypothetical protein TIGR00269	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]	Back alignment and domain information

>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU)	Back alignment and domain information

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional	Back alignment and domain information

>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu	Back alignment and domain information

>cd03707 EFTU_III Domain III of elongation factor (EF) Tu	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma	Back alignment and domain information

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		474
2der_A		380	Cocrystal Structure Of An Rna Sulfuration Enzyme Mn		9e-62
2hma_A		376	The Crystal Structure Of Trna (5-Methylaminomethyl-		2e-50

>pdb|2DER|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And Trna-Glu In The Initial Trna Binding State Length = 380

Back alignment and structure

Iteration: 1

Score = 234 bits (596), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%) Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79 KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD Sbjct: 19 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 75 Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138 ++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY Sbjct: 76 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 135 Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198 +A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V Sbjct: 136 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 190 Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258 RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G + Sbjct: 191 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 249 Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308 +T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L Sbjct: 250 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 305 Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368 W+ P R K R+ C ++ ++D + I V+ E + GQ A F Sbjct: 306 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 360 Query: 369 YQGTRCIGSGVI 380 Y G C+G G+I Sbjct: 361 YNGEVCLGGGII 372

PyMOL of 2der

>pdb|2HMA|A Chain A, The Crystal Structure Of Trna (5-Methylaminomethyl-2-Thiouridylate)- Methyltransferase Trmu From Streptococcus Pneumoniae Length = 376

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		474
2der_A		380	TRNA-specific 2-thiouridylase MNMA; protein-RNA co	1e-141
2hma_A		376	Probable tRNA (5-methylaminomethyl-2-thiouridylat	1e-139
3k32_A		203	Uncharacterized protein MJ0690; predicted subunit	2e-23
2c5s_A		413	THII, probable thiamine biosynthesis protein THII;	7e-07
1wy5_A		317	TILS, hypothetical UPF0072 protein AQ_1887; N-type	2e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3fiu_A		249	NH(3)-dependent NAD(+) synthetase; rossman fold, a	4e-04
3rjz_A		237	N-type ATP pyrophosphatase superfamily; structural	5e-04
2vxo_A		697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	5e-04

>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* Length = 380	Back alignment and structure

 Score =  408 bits (1051), Expect = e-141
 Identities = 137/379 (36%), Positives = 201/379 (53%), Gaps = 22/379 (5%)

Query: 12  SMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDM 71
           SM      KV V +SGGVDSSV+  LL   G+     ++K W ++D E +   C    D+
Sbjct: 12  SMSETAK-KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADL 67

Query: 72  KYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-A 130
             A+AVCD++ + L  V+   EYW NV    + EY+ GRTPNPD+LCN  IKF AF++ A
Sbjct: 68  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 127

Query: 131 ISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPL 190
              +  DY+A+GHY +      D + +   L    D  KDQ+YFL  LS  Q+ + +FP+
Sbjct: 128 AEDLGADYIATGHYVRRADV--DGKSR---LLRGLDSNKDQSYFLYTLSHEQIAQSLFPV 182

Query: 191 GCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFL 250
           G + K +VRK A    L    +KDS GICF+G+ KF EF+ R++    G I+  + GD +
Sbjct: 183 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEI 241

Query: 251 GKHWGFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRV 304
           G+H G  ++T+GQR+GL + G       PWYVV+KDV+NN++ V++ +            
Sbjct: 242 GEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIA 301

Query: 305 GSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQ 364
             L W+   P     R   K R+      C   ++ ++D       V   E    +  GQ
Sbjct: 302 QQLHWVDREPFTGTMRCTVKTRYRQTDIPC--TVKALDDDR---IEVIFDEPVAAVTPGQ 356

Query: 365 FAAFYQGTRCIGSGVILES 383
            A FY G  C+G G+I + 
Sbjct: 357 SAVFYNGEVCLGGGIIEQR 375

PyMOL of 2der

>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} Length = 376	Back alignment and structure

>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} Length = 203	Back alignment and structure

>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1 Length = 413	Back alignment and structure

>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Length = 317	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp} Length = 249	Back alignment and structure

>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A Length = 237	Back alignment and structure

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Length = 697	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		474
2hma_A		376	Probable tRNA (5-methylaminomethyl-2-thiouridylat	100.0
2der_A		380	TRNA-specific 2-thiouridylase MNMA; protein-RNA co	100.0
1vl2_A		421	Argininosuccinate synthase; TM1780, structural gen	99.94
3k32_A		203	Uncharacterized protein MJ0690; predicted subunit	99.94
1wy5_A		317	TILS, hypothetical UPF0072 protein AQ_1887; N-type	99.92
3a2k_A		464	TRNA(Ile)-lysidine synthase; ligase, pseudo-knot,	99.92
1kor_A		400	Argininosuccinate synthetase; ligase, riken struct	99.91
3fiu_A		249	NH(3)-dependent NAD(+) synthetase; rossman fold, a	99.9
1ni5_A		433	Putative cell cycle protein MESJ; structural genom	99.9
1k92_A		455	Argininosuccinate synthase, argininosuccinate SY;	99.9
2pg3_A		232	Queuosine biosynthesis protein QUEC; YP_049261.1,	99.89
3p52_A		249	NH(3)-dependent NAD(+) synthetase; structural geno	99.89
3bl5_A		219	Queuosine biosynthesis protein QUEC; PREQ1 biosynt	99.89
2nz2_A		413	Argininosuccinate synthase; amino-acid biosynthesi	99.88
1wxi_A		275	NH(3)-dependent NAD(+) synthetase; NADE, E.coli, l	99.87
2c5s_A		413	THII, probable thiamine biosynthesis protein THII;	99.86
1kqp_A		271	NAD+ synthase, NH(3)-dependent NAD(+) synthetase,	99.84
2dpl_A		308	GMP synthetase, GMP synthase [glutamine-hydrolyzin	99.84
3tqi_A		527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	99.84
2vxo_A		697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	99.84
2e18_A		257	NH(3)-dependent NAD(+) synthetase; ligase, structu	99.83
2ywb_A		503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	99.83
1xng_A		268	NH(3)-dependent NAD(+) synthetase; amidotransferas	99.83
1vbk_A		307	Hypothetical protein PH1313; structural genomics,	99.82
1sur_A		215	PAPS reductase; assimilatory sulfate reduction, 3-	99.82
1gpm_A		525	GMP synthetase, XMP aminase; class I glutamine ami	99.82
3q4g_A		279	NH(3)-dependent NAD(+) synthetase; structural geno	99.8
3uow_A		556	GMP synthetase; structural genomics consortium, SG	99.79
3dpi_A		285	NAD+ synthetase; ssgcid, decode, structural genomi	99.79
2o8v_A		252	Phosphoadenosine phosphosulfate reductase; disulfi	99.72
3ilv_A		634	Glutamine-dependent NAD(+) synthetase; protein str	99.7
3n05_A		590	NH(3)-dependent NAD(+) synthetase; ligase, structu	99.65
1zun_A		325	Sulfate adenylyltransferase subunit 2; beta barrel	99.6
3rjz_A		237	N-type ATP pyrophosphatase superfamily; structural	99.54
2oq2_A		261	Phosphoadenosine phosphosulfate reductase; sulfate	99.53
3sdb_A		680	Glutamine-dependent NAD(+) synthetase; glutamine-a	99.48
2goy_A		275	Adenosine phosphosulfate reductase; iron sulfur cl	99.35
2wsi_A		306	FAD synthetase; transferase, nucleotidyltransferas	99.21
1q15_A		503	CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS,	99.01
1jgt_A		513	Beta-lactam synthetase; asparagine synthetase, cla	98.98
1ct9_A		553	Asparagine synthetase B; amidotransferase, substra	98.95
4f4h_A		565	Glutamine dependent NAD+ synthetase; structural ge	98.78
3fwk_A		308	FMN adenylyltransferase; FAD biosynthesis, alpha/b	98.48
3da8_A		215	Probable 5'-phosphoribosylglycinamide formyltransf	82.87
3o1l_A		302	Formyltetrahydrofolate deformylase; structural gen	81.66

>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}	Back alignment and structure

Probab=100.00  E-value=2.2e-84  Score=671.81  Aligned_cols=359  Identities=37%  Similarity=0.672  Sum_probs=320.7

Q ss_pred             CCCCCCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcch
Q 042717           13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTD   92 (474)
Q Consensus        13 ~~~~~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~   92 (474)
                      |...+++||+||||||+||+++|++|+++|++|+++||++|...+..   ..|++.++.++|+++|++|||||+++|+++
T Consensus         4 ~~~~~~~kVlVa~SGGvDSsv~a~lL~~~G~~V~~v~~~~~~~~~~~---~~c~~~~d~~~a~~va~~lGIp~~vv~~~~   80 (376)
T 2hma_A            4 MSDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEN---GVCTATEDYKDVVAVADQIGIPYYSVNFEK   80 (376)
T ss_dssp             -CCGGGSEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEECCCCCC-------CHHHHHHHHHHHHHHHHTCCEEEEECHH
T ss_pred             hhhCCCCeEEEEEeCHHHHHHHHHHHHHcCCcEEEEEEECCCccccc---ccCCCHHHHHHHHHHHHHhCCcEEEEeChH
Confidence            33345679999999999999999999999999999999998642111   236677899999999999999999999999


Q ss_pred             HHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccc
Q 042717           93 EYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQT  172 (474)
Q Consensus        93 ~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQs  172 (474)
                      +|++.|+++++++|..|+|||||+.||+.+||..|.++|+++|+++||||||+++...    ......+.++.+..||||
T Consensus        81 ~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~~~----~~~~~~l~rg~d~~kdqs  156 (376)
T 2hma_A           81 EYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVARD----EDGTVHMLRGVDNGKDQT  156 (376)
T ss_dssp             HHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEEC----SSSCEEEEECSSTTTCCG
T ss_pred             HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhhhC----CCchhhhhhccccccccc
Confidence            9999999999999999999999999999999999999999999999999999986320    112233567788899999


Q ss_pred             ccccccChhhhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccccccchHHHHHhhhccCCCcEEeccCCceeee
Q 042717          173 YFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK  252 (474)
Q Consensus       173 yfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl~~~~~~~fL~~~~~~~~G~ivd~~~g~~lG~  252 (474)
                      |||+.+++.++.+++|||++++|+||+++|+++||+++++|+|+++||+++.+|++||+++++..||.++|. +|+++|+
T Consensus       157 yfL~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~gl~~~~k~~s~~~cf~~~~~~~~fL~~~~~~~pG~~vd~-~g~~~g~  235 (376)
T 2hma_A          157 YFLSQLSQEQLQKTMFPLGHLEKPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTV-DGRDMGE  235 (376)
T ss_dssp             GGGTTCCHHHHTTEECTTTTCCHHHHHHHHHHTTCTTTTCCCCCSCTTTTTSCHHHHHHTTSCCCCEEEEET-TCCEEEE
T ss_pred             hhccCCChhhcCcEEecCcCCCHHHHHHHHHHcCCCcccCCCCCCccccCchhHHHHHHHHhhcCCCCEEcC-CCCEEEE
Confidence            999999998888999999999999999999999999999999999999999999999999988889999995 7999999


Q ss_pred             ecceeeEeecccccCCCCC------ceEEEEEEecCCCeEEEecCCCCccceeeEEEEcceeeccCCCcccccceeeeec
Q 042717          253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVR  326 (474)
Q Consensus       253 H~G~~~yTiGQR~Gl~i~~------~p~yVv~~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~~~~~~~~~~~kiR  326 (474)
                      |.|+|+|||||||||++++      +||||+++|+++|+|+|+.+.+.+.++++.+.+.++||+...++..+.++.+|+|
T Consensus       236 H~g~~~yTiGQr~gl~i~~~~~~~~~p~~V~~~d~~~n~v~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~r  315 (376)
T 2hma_A          236 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTREMPEEFTLECTAKFR  315 (376)
T ss_dssp             ESCGGGCCTTCBSCTTTTC----CCSCEEEEEEEGGGTEEEEEESTTCGGGEEEEEEEEEEEESSCCCSSEEEEEEEESS
T ss_pred             ecCeeeeccCcccccCCCcccCCCCceEEEEEEecCCCEEEEEcCCChHHhccceEEeecceecCCCCCCCCeEEEEEEc
Confidence            9999999999999999975      6999999999999999998766678999999999999997655555678999999


Q ss_pred             cCCCccceEEEEeeeecCCCCEEEEEecCCccCCCCCceEEEEeCCEEEEeeEEeeecc
Q 042717          327 HGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESWD  385 (474)
Q Consensus       327 ~~~~~~~c~v~~~~~~~~~~~~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I~~~~~  385 (474)
                      |++++.+|++...      ++.++|+|++|++||||||+||||+||+|||||+|.+...
T Consensus       316 ~~~~~~~~~~~~~------~~~~~v~~~~~~~~v~pGQ~~v~Y~~~~~lggg~i~~~~~  368 (376)
T 2hma_A          316 YRQPDSKVTVHVK------GEKTEVIFAEPQRAITPGQAVVFYDGEECLGGGLIDNAYR  368 (376)
T ss_dssp             TTSCCEEEEEEEC------SSCEEEEEEEEEECCCTTSEEEEEETTEEEEEEEEEEEES
T ss_pred             cCCCCCCEEEEEe------CCEEEEEeCCCCCCCCCCceEEEEeCCEEEeeEEEeeecC
Confidence            9999999998753      3478999999999999999999999999999999987644

PyMOL of 2hma

>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*	Back alignment and structure

>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1	Back alignment and structure

>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}	Back alignment and structure

>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*	Back alignment and structure

>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}	Back alignment and structure

>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*	Back alignment and structure

>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}	Back alignment and structure

>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1	Back alignment and structure

>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*	Back alignment and structure

>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1	Back alignment and structure

>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0	Back alignment and structure

>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}	Back alignment and structure

>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}	Back alignment and structure

>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*	Back alignment and structure

>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1	Back alignment and structure

>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A	Back alignment and structure

>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A	Back alignment and structure

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}	Back alignment and structure

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}	Back alignment and structure

>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}	Back alignment and structure

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*	Back alignment and structure

>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A	Back alignment and structure

>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1	Back alignment and structure

>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2	Back alignment and structure

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1	Back alignment and structure

>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0	Back alignment and structure

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}	Back alignment and structure

>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0	Back alignment and structure

>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}	Back alignment and structure

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}	Back alignment and structure

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}	Back alignment and structure

>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2	Back alignment and structure

>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A	Back alignment and structure

>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}	Back alignment and structure

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*	Back alignment and structure

>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}	Back alignment and structure

>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}	Back alignment and structure

>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*	Back alignment and structure

>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*	Back alignment and structure

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1	Back alignment and structure

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}	Back alignment and structure

>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*	Back alignment and structure

>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*	Back alignment and structure

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		474
d2c5sa1		218	c.26.2.6 (A:174-391) Thiamine biosynthesis protein	7e-18
d1gpma1		197	c.26.2.1 (A:208-404) GMP synthetase, central domai	2e-17
d1k92a1		188	c.26.2.1 (A:1-188) Argininosuccinate synthetase, N	1e-16
d1j20a1		165	c.26.2.1 (A:1-165) Argininosuccinate synthetase, N	3e-12
d1vl2a1		168	c.26.2.1 (A:2-169) Argininosuccinate synthetase, N	1e-11
d1wy5a1		216	c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aqui	9e-06
d2pg3a1		230	c.26.2.1 (A:1-230) Queuosine biosynthesis protein	2e-05
d2d13a1		226	c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Ar	1e-04
d1zuna1		211	c.26.2.2 (A:1-211) Sulfate adenylyltransferase sub	1e-04
d1ct9a1		324	c.26.2.1 (A:193-516) Asparagine synthetase B, C-te	3e-04
d1xnga1		255	c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {	8e-04
d1ni5a1		227	c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, T	0.003

>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Length = 218	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ThiI-like
domain: Thiamine biosynthesis protein ThiI, C-terminal domain
species: Bacillus anthracis [TaxId: 1392]

 Score = 80.0 bits (196), Expect = 7e-18
 Identities = 32/206 (15%), Positives = 57/206 (27%), Gaps = 33/206 (16%)

Query: 20  KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
           KV VLLSGG+DS VA  L    G S  A +                  E   +    +  
Sbjct: 6   KVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFHSPP----------FTSERAKQKVIDLAQ 55

Query: 80  QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
           ++    + V L    +  V   I +E           +   R+                +
Sbjct: 56  ELTKYCKRVTLHLVPFTEVQKTINKEIPSS---YSMTVMR-RMMMRITERIAEERNALAI 111

Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
            +G                                +  +++     +I PL  + K E+ 
Sbjct: 112 TTGESL-------------------GQVASQTLDSMHTINEVTNYPVIRPLITMDKLEII 152

Query: 200 KFATQFDLPNKDRKDSQGICFLGKIK 225
           K A +    +   +  +  C +    
Sbjct: 153 KIAEEIGTYDISIRPYEDCCTVFTPA 178

PyMOL of d2c5sa1

>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]} Length = 197	Back information, alignment and structure

>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 188	Back information, alignment and structure

>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 165	Back information, alignment and structure

>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 168	Back information, alignment and structure

>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Length = 216	Back information, alignment and structure

>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]} Length = 230	Back information, alignment and structure

>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226	Back information, alignment and structure

>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 211	Back information, alignment and structure

>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 324	Back information, alignment and structure

>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]} Length = 255	Back information, alignment and structure

>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 227	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		474
d1wy5a1		216	TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId	99.94
d1ni5a1		227	tRNA-Ile-lysidine synthetase, TilS, N-terminal dom	99.91
d2c5sa1		218	Thiamine biosynthesis protein ThiI, C-terminal dom	99.91
d1xnga1		255	NH3-dependent NAD+-synthetase {Helicobacter pylori	99.8
d1k92a1		188	Argininosuccinate synthetase, N-terminal domain {E	99.77
d1gpma1		197	GMP synthetase, central domain {Escherichia coli [	99.73
d2pg3a1		230	Queuosine biosynthesis protein QueC {Erwinia carot	99.67
d1vl2a1		168	Argininosuccinate synthetase, N-terminal domain {T	99.67
d1j20a1		165	Argininosuccinate synthetase, N-terminal domain {T	99.64
d1vbka1		132	Hypothetical protein PH1313, C-terminal domain {Ar	99.57
d1wxia1		274	NH3-dependent NAD+-synthetase {Escherichia coli [T	99.44
d2d13a1		226	Hypothetical protein PH1257 {Archaeon Pyrococcus h	99.4
d1kqpa_		271	NH3-dependent NAD+-synthetase {Bacillus subtilis [	99.35
d1sura_		215	Phosphoadenylyl sulphate (PAPS) reductase {Escheri	99.31
d1zuna1		211	Sulfate adenylyltransferase subunit 2, CysD {Pseud	99.16
d1q15a1		296	beta-Lactam synthetase {Pectobacterium carotovorum	98.67
d1jgta1		299	beta-Lactam synthetase {Streptomyces clavuligerus	98.55
d1ct9a1		324	Asparagine synthetase B, C-terminal domain {Escher	98.13

>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: TilS-like protein Aq 1887
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.94  E-value=5.9e-27  Score=222.25  Aligned_cols=173  Identities=16%  Similarity=0.176  Sum_probs=139.8

Q ss_pred             CCCeEEEEEccchhHHHHHHHHHHc----C-CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcc
Q 042717           17 KGLKVAVLLSGGVDSSVALRLLHSA----G-HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLT   91 (474)
Q Consensus        17 ~~~kVlValSGGvDSsvaa~LLke~----G-~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~   91 (474)
                      +++||+||+|||+||+++|++|++.    + .+|.++|++++..+         .+..+.+.++++|+.+|||+++.++.
T Consensus        23 ~~~kv~Va~SGG~DS~~Ll~lL~~~~~~~~~~~i~~~~vdh~~r~---------~s~~~~~~~~~~~~~l~i~~~i~~~~   93 (216)
T d1wy5a1          23 GERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRE---------SAERDEEFCKEFAKERNMKIFVGKED   93 (216)
T ss_dssp             SCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSST---------HHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CCCeEEEEeCCcHHHHHHHHHHHHHHHhcCCCcEEEEEeeccccc---------chhhhhhHHHHHHHhhhhhhhhhccc
Confidence            4679999999999999999999885    2 36889999986532         24678899999999999999999987


Q ss_pred             hHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccc
Q 042717           92 DEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQ  171 (474)
Q Consensus        92 ~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQ  171 (474)
                      ......          .  ...+|..|.|..|+..|.++|++.|+++||||||+|       |..+|++++..++.+.. 
T Consensus        94 ~~~~~~----------~--~~~~~~~~~R~~Ry~~l~~~a~~~~~~~ia~GH~~d-------D~~Et~l~~l~rg~~~~-  153 (216)
T d1wy5a1          94 VRAFAK----------E--NRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLN-------DLLETSLLFFTRGTGLD-  153 (216)
T ss_dssp             HHHHHH----------H--TTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHH-------HHHHHHHHHHHHCCCHH-
T ss_pred             hhhhcc----------C--CccchHHHHHHHHHHHhhhhccccccceeEeeeecc-------chHHHHHHHhhcCCccc-
Confidence            532211          1  234566788889999999999999999999999998       46789999888765422 


Q ss_pred             cccccccChhhhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccc
Q 042717          172 TYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFL  221 (474)
Q Consensus       172 syfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl  221 (474)
                        .|.++..... .+++||..++|+||++||+++|||++++|+|.+.||.
T Consensus       154 --~l~~~~~~~~-~i~RPLl~~~k~eI~~~a~~~~l~~~~D~sN~~~~~~  200 (216)
T d1wy5a1         154 --GLIGFLPKEE-VIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYEVSIP  200 (216)
T ss_dssp             --HHHCSCSEET-TEECTTTTCCHHHHHHHHHHTTCCCCCCGGGGTCCHH
T ss_pred             --cccCCCcccc-eecchhhcCCHHHHHHHHHHcCCcEEECcCCCCCccc
Confidence              2444444432 5789999999999999999999999999999888774

PyMOL of d1wy5a1

>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]}	Back information, alignment and structure

>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]}	Back information, alignment and structure

>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}	Back information, alignment and structure

>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}	Back information, alignment and structure

>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]}	Back information, alignment and structure

>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}	Back information, alignment and structure

>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure