Citrus Sinensis ID: 042743

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-----
Protein Sequence
MKKTRKKVIFHASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT
Secondary Structure (PSIPRED)
cccccEEEEEEEcccccccHHHHHHHHHHHHHHcEEEHHccccEEEEEccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEcccccccccHHHHHHHEEccccHHHEEEccccccccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MKKTRKKVIFHASNDIDVGSEYFEAVRFVNSLGSVMLSiwgketdfhiepeLTLELMMAANYLHT
Flexible Loop (DISEMBL)
mkktrkkvifhasndidvgseYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT
Low Complexity Region (SEG)
MKKTRKKVIFHASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT
Disordered region (IsUnstruct)
*******VIFHASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANY***
Disordered Region (DISOPRED)
*****KK**FHASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYL**
Disordered Region (DISEMBL)
MKKTRKKVIFHASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT
Disordered Region (DISPRO)
***TRKKVIFHASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKKTRKKVIFHASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
18424201	96	transcription elongation factor B, polyp	0.384	0.260	0.96	6e-06
168023964	101	predicted protein [Physcomitrella patens	0.384	0.247	0.92	1e-05
168065725	99	predicted protein [Physcomitrella patens	0.384	0.252	0.88	3e-05
302780849	99	hypothetical protein SELMODRAFT_96367 [S	0.384	0.252	0.88	3e-05
255558940	98	Transcription elongation factor B polype	0.384	0.255	0.92	8e-05
351723207	98	uncharacterized protein LOC100500097 [Gl	0.384	0.255	0.92	8e-05
224106387	98	predicted protein [Populus trichocarpa]	0.384	0.255	0.92	0.0001
449455078	98	PREDICTED: transcription elongation fact	0.384	0.255	0.92	0.0001
351724177	98	uncharacterized protein LOC100305702 [Gl	0.384	0.255	0.92	0.0001
225434792	98	PREDICTED: transcription elongation fact	0.384	0.255	0.88	0.0002

>gi|18424201|ref|NP_568900.1| transcription elongation factor B, polypeptide 1 [Arabidopsis thaliana] gi|297790272|ref|XP_002863037.1| SKP1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297793455|ref|XP_002864612.1| SKP1 family protein [Arabidopsis lyrata subsp. lyrata] gi|9759236|dbj|BAB09760.1| unnamed protein product [Arabidopsis thaliana] gi|15028385|gb|AAK76669.1| putative elongin protein [Arabidopsis thaliana] gi|20465563|gb|AAM20264.1| unknown protein [Arabidopsis thaliana] gi|297308839|gb|EFH39296.1| SKP1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297310447|gb|EFH40871.1| SKP1 family protein [Arabidopsis lyrata subsp. lyrata] gi|332009765|gb|AED97148.1| transcription elongation factor B, polypeptide 1 [Arabidopsis thaliana]

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/25 (96%), Positives = 25/25 (100%)

Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
          GKET+FHIEPELTLELMMAANYLHT
Sbjct: 72 GKETEFHIEPELTLELMMAANYLHT 96

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168023964|ref|XP_001764507.1| predicted protein [Physcomitrella patens subsp. patens] gi|162684371|gb|EDQ70774.1| predicted protein [Physcomitrella patens subsp. patens]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/25 (92%), Positives = 25/25 (100%)

Query: 41  GKETDFHIEPELTLELMMAANYLHT 65
           GK+TDFHIEPE+TLELMMAANYLHT
Sbjct: 77  GKKTDFHIEPEMTLELMMAANYLHT 101

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168065725|ref|XP_001784798.1| predicted protein [Physcomitrella patens subsp. patens] gi|162663632|gb|EDQ50386.1| predicted protein [Physcomitrella patens subsp. patens]

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/25 (88%), Positives = 25/25 (100%)

Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
          GKET+FHIEPE+TL+LMMAANYLHT
Sbjct: 75 GKETEFHIEPEITLDLMMAANYLHT 99

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302780849|ref|XP_002972199.1| hypothetical protein SELMODRAFT_96367 [Selaginella moellendorffii] gi|302791489|ref|XP_002977511.1| hypothetical protein SELMODRAFT_106838 [Selaginella moellendorffii] gi|300154881|gb|EFJ21515.1| hypothetical protein SELMODRAFT_106838 [Selaginella moellendorffii] gi|300160498|gb|EFJ27116.1| hypothetical protein SELMODRAFT_96367 [Selaginella moellendorffii]

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/25 (88%), Positives = 25/25 (100%)

Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
          GKET+FHIEPE+TLEL+MAANYLHT
Sbjct: 75 GKETEFHIEPEMTLELLMAANYLHT 99

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558940|ref|XP_002520493.1| Transcription elongation factor B polypeptide, putative [Ricinus communis] gi|223540335|gb|EEF41906.1| Transcription elongation factor B polypeptide, putative [Ricinus communis]

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/25 (92%), Positives = 24/25 (96%)

Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
          GKET+F IEPELTLELMMAANYLHT
Sbjct: 74 GKETEFPIEPELTLELMMAANYLHT 98

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723207|ref|NP_001236759.1| uncharacterized protein LOC100500097 [Glycine max] gi|255629123|gb|ACU14906.1| unknown [Glycine max]

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/25 (92%), Positives = 24/25 (96%)

Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
          GKET+F IEPELTLELMMAANYLHT
Sbjct: 74 GKETEFSIEPELTLELMMAANYLHT 98

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106387|ref|XP_002314149.1| predicted protein [Populus trichocarpa] gi|222850557|gb|EEE88104.1| predicted protein [Populus trichocarpa]

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/25 (92%), Positives = 24/25 (96%)

Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
          GKET+F IEPELTLELMMAANYLHT
Sbjct: 74 GKETEFPIEPELTLELMMAANYLHT 98

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455078|ref|XP_004145280.1| PREDICTED: transcription elongation factor B polypeptide 1-like [Cucumis sativus] gi|449474021|ref|XP_004154051.1| PREDICTED: transcription elongation factor B polypeptide 1-like [Cucumis sativus] gi|449508510|ref|XP_004163332.1| PREDICTED: transcription elongation factor B polypeptide 1-like [Cucumis sativus]

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/25 (92%), Positives = 24/25 (96%)

Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
          GKET+F IEPELTLELMMAANYLHT
Sbjct: 74 GKETEFPIEPELTLELMMAANYLHT 98

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724177|ref|NP_001235513.1| uncharacterized protein LOC100305702 [Glycine max] gi|255626357|gb|ACU13523.1| unknown [Glycine max]

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/25 (92%), Positives = 24/25 (96%)

Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
          GKET+F IEPELTLELMMAANYLHT
Sbjct: 74 GKETEFPIEPELTLELMMAANYLHT 98

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434792|ref|XP_002282124.1| PREDICTED: transcription elongation factor B polypeptide 1 [Vitis vinifera]

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/25 (88%), Positives = 24/25 (96%)

Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
          GK+T+F IEPELTLELMMAANYLHT
Sbjct: 74 GKDTEFPIEPELTLELMMAANYLHT 98

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
TAIR|locus:2168454	96	AT5G59140 [Arabidopsis thalian	0.384	0.260	0.96	2e-08

TAIR|locus:2168454 AT5G59140 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 24/25 (96%), Positives = 25/25 (100%)

Query:    41 GKETDFHIEPELTLELMMAANYLHT 65
             GKET+FHIEPELTLELMMAANYLHT
Sbjct:    72 GKETEFHIEPELTLELMMAANYLHT 96


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       65        65   0.00091  102 3  11 22  0.39    28
                                                     29  0.46    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  492 (52 KB)
  Total size of DFA:  87 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.69u 0.17s 6.86t   Elapsed:  00:00:00
  Total cpu time:  6.69u 0.17s 6.86t   Elapsed:  00:00:00
  Start:  Fri May 10 22:09:58 2013   End:  Fri May 10 22:09:58 2013

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	65
KOG3473	112	consensus RNA polymerase II transcription elongati	99.91
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	99.2
KOG1724	162	consensus SCF ubiquitin ligase, Skp1 component [Po	97.26
COG5201	158	SKP1 SCF ubiquitin ligase, SKP1 component [Posttra	96.34
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	93.6
PF01466	78	Skp1: Skp1 family, dimerisation domain; InterPro:	93.41
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	90.79
PHA03098	534	kelch-like protein; Provisional	82.47
PHA02713	557	hypothetical protein; Provisional	80.35
PHA02790	480	Kelch-like protein; Provisional	80.01

>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]

Probab=99.91  E-value=6.1e-25  Score=147.20  Aligned_cols=47  Identities=43%  Similarity=0.641  Sum_probs=45.3

Q ss_pred             eccchHHHHHHHh-hhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743           11 HASNDIDVGSEYF-EAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT   65 (65)
Q Consensus        11 ~~S~vLekV~eYl-Yk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~   65 (65)
                      +.||+|+|||||| ||+||+|++        .++|+|+||||+|||||||||||+|
T Consensus        65 i~shiLeKvc~Yl~Yk~rY~~~s--------~eiPeF~IppemaleLL~aAn~Lec  112 (112)
T KOG3473|consen   65 IPSHILEKVCEYLAYKVRYTNSS--------TEIPEFDIPPEMALELLMAANYLEC  112 (112)
T ss_pred             chHHHHHHHHHHhhheeeecccc--------ccCCCCCCCHHHHHHHHHHhhhhcC
Confidence            6799999999999 999999997        7999999999999999999999998

>smart00512 Skp1 Found in Skp1 protein family

Probab=99.20  E-value=1.1e-11  Score=77.15  Aligned_cols=50  Identities=28%  Similarity=0.283  Sum_probs=41.5

Q ss_pred             eccchHHHHHHHh-hhhhcccCcccccccccCCCCCCC-----CChHHHHHHHHhhhhcCC
Q 042743           11 HASNDIDVGSEYF-EAVRFVNSLGSVMLSIWGKETDFH-----IEPELTLELMMAANYLHT   65 (65)
Q Consensus        11 ~~S~vLekV~eYl-Yk~rY~~s~~~~~~~~~~~iPeF~-----IppEiaLELLmAAdyLd~   65 (65)
                      +.|.+|++||+|+ |+..|.++..     ...++|+|+     ++++.++|||+|||||++
T Consensus        49 v~~~~L~~Vi~yc~~h~~~~~~~~-----~~~~~~~wD~~F~~~d~~~l~dLl~AAnyL~I  104 (104)
T smart00512       49 VTSKILSKVIEYCEHHVDDPPSVA-----DKDDIPTWDAEFLKIDQETLFELILAANYLDI  104 (104)
T ss_pred             cCHHHHHHHHHHHHHcccCCCCcc-----ccccccHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            6899999999999 8888876542     113578776     999999999999999986

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.0003  Score=48.96  Aligned_cols=55  Identities=16%  Similarity=0.192  Sum_probs=36.3

Q ss_pred             eccchHHHHHHHhhhhhcccCcc--cccccccCCCCCC-----CCChHHHHHHHHhhhhcCC
Q 042743           11 HASNDIDVGSEYFEAVRFVNSLG--SVMLSIWGKETDF-----HIEPELTLELMMAANYLHT   65 (65)
Q Consensus        11 ~~S~vLekV~eYlYk~rY~~s~~--~~~~~~~~~iPeF-----~IppEiaLELLmAAdyLd~   65 (65)
                      .+|.+|.||++|.++|+-.+...  +.......++|+.     .++-..-.||+.|||||++
T Consensus        51 V~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi  112 (162)
T KOG1724|consen   51 VTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLKVDQGTLFDLILAANYLDI  112 (162)
T ss_pred             cCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHHHhcCHHHHHHHHHHhhhccc
Confidence            57999999999997666432110  0000111235532     5888899999999999985

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.34  E-value=0.0035  Score=44.49  Aligned_cols=55  Identities=29%  Similarity=0.319  Sum_probs=38.2

Q ss_pred             eccchHHHHHHHhhhhhcccCcccccccccCCCC-CC------CCChHHHHHHHHhhhhcCC
Q 042743           11 HASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKET-DF------HIEPELTLELMMAANYLHT   65 (65)
Q Consensus        11 ~~S~vLekV~eYlYk~rY~~s~~~~~~~~~~~iP-eF------~IppEiaLELLmAAdyLd~   65 (65)
                      ..|.||.||.+|+-.++-+++.+....++..--| ||      .++.|+-+|...|||||++
T Consensus        46 VrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~Fm~vDqemL~eI~laaNYL~i  107 (158)
T COG5201          46 VRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEVDQEMLLEICLAANYLEI  107 (158)
T ss_pred             hhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHHHHhhHHHHHHHHHhhccccc
Confidence            4689999999999767767664322222221112 33      4889999999999999984

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=93.60  E-value=0.035  Score=32.06  Aligned_cols=17  Identities=18%  Similarity=0.094  Sum_probs=13.2

Q ss_pred             eccchHHHHHHHhhhhh
Q 042743           11 HASNDIDVGSEYFEAVR   27 (65)
Q Consensus        11 ~~S~vLekV~eYlYk~r   27 (65)
                      +.|.+|+||+||+++++
T Consensus        45 v~~~~L~kViewc~~H~   61 (62)
T PF03931_consen   45 VSSRILKKVIEWCEHHK   61 (62)
T ss_dssp             S-HHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcC
Confidence            57999999999994444

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=93.41  E-value=0.059  Score=32.46  Aligned_cols=19  Identities=32%  Similarity=0.587  Sum_probs=15.0

Q ss_pred             CCChHHHHHHHHhhhhcCC
Q 042743           47 HIEPELTLELMMAANYLHT   65 (65)
Q Consensus        47 ~IppEiaLELLmAAdyLd~   65 (65)
                      ++..+.-++|+.||+||++
T Consensus        10 ~~~~~~L~~l~~AA~yL~I   28 (78)
T PF01466_consen   10 DVDNDELFDLLNAANYLDI   28 (78)
T ss_dssp             -S-HHHHHHHHHHHHHHT-
T ss_pred             HcCHHHHHHHHHHHHHHcc
Confidence            6678899999999999985

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=90.79  E-value=0.27  Score=26.61  Aligned_cols=36  Identities=22%  Similarity=0.311  Sum_probs=24.6

Q ss_pred             ccchHHHHHHHhhhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743           12 ASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT   65 (65)
Q Consensus        12 ~S~vLekV~eYlYk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~   65 (65)
                      .+..++.+++|+|..                  +.+++++...+++.+|+++++
T Consensus        47 ~~~~f~~~l~~ly~~------------------~~~~~~~~~~~l~~~a~~~~~   82 (90)
T smart00225       47 SPEDFRALLEFLYTG------------------KLDLPEENVEELLELADYLQI   82 (90)
T ss_pred             CHHHHHHHHHeecCc------------------eeecCHHHHHHHHHHHHHHCc
Confidence            455666666666532                  124566688999999999874

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>PHA03098 kelch-like protein; Provisional

Probab=82.47  E-value=1.7  Score=32.75  Aligned_cols=19  Identities=26%  Similarity=0.398  Sum_probs=16.3

Q ss_pred             CCChHHHHHHHHhhhhcCC
Q 042743           47 HIEPELTLELMMAANYLHT   65 (65)
Q Consensus        47 ~IppEiaLELLmAAdyLd~   65 (65)
                      +|..+.+.+||.|||+|+.
T Consensus        72 ~i~~~~~~~ll~~A~~l~~   90 (534)
T PHA03098         72 NITSNNVKDILSIANYLII   90 (534)
T ss_pred             EEcHHHHHHHHHHHHHhCc
Confidence            5678889999999999873

>PHA02713 hypothetical protein; Provisional

Probab=80.35  E-value=1.8  Score=34.00  Aligned_cols=35  Identities=17%  Similarity=0.313  Sum_probs=27.2

Q ss_pred             eccchHHHHHHHhhhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743           11 HASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT   65 (65)
Q Consensus        11 ~~S~vLekV~eYlYk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~   65 (65)
                      +...+++.+++|+|.-                    +|.++.+.+||.|||+|++
T Consensus        74 v~~~~~~~ll~y~Yt~--------------------~i~~~nv~~ll~aA~~lqi  108 (557)
T PHA02713         74 FDKDAVKNIVQYLYNR--------------------HISSMNVIDVLKCADYLLI  108 (557)
T ss_pred             CCHHHHHHHHHHhcCC--------------------CCCHHHHHHHHHHHHHHCH
Confidence            4567888888888751                    1567889999999999973

>PHA02790 Kelch-like protein; Provisional

Probab=80.01  E-value=1.4  Score=33.72  Aligned_cols=18  Identities=17%  Similarity=0.174  Sum_probs=13.8

Q ss_pred             CCChHHHHHHHHhhhhcC
Q 042743           47 HIEPELTLELMMAANYLH   64 (65)
Q Consensus        47 ~IppEiaLELLmAAdyLd   64 (65)
                      .|..+.+.+||.||++|+
T Consensus        87 ~it~~nV~~ll~aA~~Lq  104 (480)
T PHA02790         87 YIDSHNVVNLLRASILTS  104 (480)
T ss_pred             EEecccHHHHHHHHHHhC
Confidence            355567888999999886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	65
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	3e-06
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	4e-06
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	3e-05

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Length = 112

 Score = 40.1 bits (94), Expect = 3e-06
 Identities = 12/19 (63%), Positives = 16/19 (84%)

Query: 45  DFHIEPELTLELMMAANYL 63
           +F I PE+ LEL+MAAN+L
Sbjct: 92  EFPIAPEIALELLMAANFL 110

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Length = 96

 Score = 39.3 bits (92), Expect = 4e-06
 Identities = 12/19 (63%), Positives = 16/19 (84%)

Query: 45 DFHIEPELTLELMMAANYL 63
          +F I PE+ LEL+MAAN+L
Sbjct: 76 EFPIAPEIALELLMAANFL 94

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Length = 99

 Score = 37.0 bits (86), Expect = 3e-05
 Identities = 10/19 (52%), Positives = 16/19 (84%)

Query: 45 DFHIEPELTLELMMAANYL 63
          +F I  E++LEL++AA+YL
Sbjct: 79 EFEIPTEMSLELLLAADYL 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	65
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.6
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	99.55
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	99.54
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	99.46
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	99.02
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	98.95
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	98.89
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	98.81
2vpk_A	116	Myoneurin; transcription regulation, transcription	93.85
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	93.76
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	93.7
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	93.62
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	93.53
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	93.38
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	93.2
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	92.86
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	92.43
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	92.29
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	92.2
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	92.18
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	90.7
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	90.0
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	89.52
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	88.44
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	87.21
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	84.4

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.60  E-value=5.2e-16  Score=95.02  Aligned_cols=47  Identities=40%  Similarity=0.602  Sum_probs=43.1

Q ss_pred             eccchHHHHHHHh-hhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743           11 HASNDIDVGSEYF-EAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT   65 (65)
Q Consensus        11 ~~S~vLekV~eYl-Yk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~   65 (65)
                      ++|.+|+||+||+ |+.+|.++.        +++|+|+|+++.++|||+|||||+|
T Consensus        50 V~~~iL~kViey~~~h~~~~~~~--------~~i~~~~i~~~~l~eLl~AAnyL~~   97 (97)
T 4ajy_C           50 IPSHVLSKVCMYFTYKVRYTNSS--------TEIPEFPIAPEIALELLMAANFLDC   97 (97)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCC--------SCCCCCCCCGGGHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhcccCCCc--------CCCCcCcCCHHHHHHHHHHHhhhCC
Confidence            6799999999999 888887654        6899999999999999999999998

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=99.55  E-value=2.6e-15  Score=92.85  Aligned_cols=47  Identities=40%  Similarity=0.602  Sum_probs=42.9

Q ss_pred             eccchHHHHHHHh-hhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743           11 HASNDIDVGSEYF-EAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT   65 (65)
Q Consensus        11 ~~S~vLekV~eYl-Yk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~   65 (65)
                      ++|.+|+|||||+ |+.+|.++.        .++|+|+|++++.+||++||||||+
T Consensus        49 V~~~iL~kVieyc~~h~~~~~~~--------~~i~~w~vd~~~l~eLi~AAnyLdI   96 (96)
T 2fnj_C           49 IPSHVLSKVCMYFTYKVRYTNSS--------TEIPEFPIAPEIALELLMAANFLDC   96 (96)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHSCC--------SCCCCCCCCTTTHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHccccCCCc--------ccCCCcccCHHHHHHHHHHHHHhCc
Confidence            5899999999999 888887654        6899999999999999999999996

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=99.54  E-value=4.8e-15  Score=94.67  Aligned_cols=47  Identities=40%  Similarity=0.602  Sum_probs=43.1

Q ss_pred             eccchHHHHHHHh-hhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743           11 HASNDIDVGSEYF-EAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT   65 (65)
Q Consensus        11 ~~S~vLekV~eYl-Yk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~   65 (65)
                      ++|.+|+|||||+ |+.+|.++.        .++|+|+|++++.+|||+||||||+
T Consensus        65 V~s~iL~kVieyc~~h~~~~~~~--------~~i~~w~vd~~~lfeLi~AAnyLdI  112 (112)
T 1vcb_B           65 IPSHVLSKVCMYFTYKVRYTNSS--------TEIPEFPIAPEIALELLMAANFLDC  112 (112)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSCS--------SCCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhhhccCCc--------CCCCCcccCHHHHHHHHHHHHHhCc
Confidence            6899999999999 888887664        6899999999999999999999996

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=99.46  E-value=3.3e-14  Score=88.42  Aligned_cols=50  Identities=26%  Similarity=0.431  Sum_probs=42.3

Q ss_pred             eccchHHHHHHHh-hhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743           11 HASNDIDVGSEYF-EAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT   65 (65)
Q Consensus        11 ~~S~vLekV~eYl-Yk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~   65 (65)
                      ++|.+|+|||||+ |+..|..+..     ...++|+|+|+++..+||++||||||+
T Consensus        49 V~~~iL~kVieyc~~h~~~~~~~~-----~~~~i~~w~vd~~~lfeLi~AAnyLdI   99 (99)
T 1hv2_A           49 FDSHILEKAVEYLNYNLKYSGVSE-----DDDEIPEFEIPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHCS-----SCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred             cCHHHHHHHHHHHHHhcccCCCcc-----ccccCCCccCCHHHHHHHHHHHHHhCc
Confidence            6899999999999 7777765421     236899999999999999999999996

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=99.02  E-value=1.9e-10  Score=76.97  Aligned_cols=55  Identities=16%  Similarity=0.100  Sum_probs=39.5

Q ss_pred             eccchHHHHHHHh-hhhhcccCcc-cccccccCCCCC-----CCCChHHHHHHHHhhhhcCC
Q 042743           11 HASNDIDVGSEYF-EAVRFVNSLG-SVMLSIWGKETD-----FHIEPELTLELMMAANYLHT   65 (65)
Q Consensus        11 ~~S~vLekV~eYl-Yk~rY~~s~~-~~~~~~~~~iPe-----F~IppEiaLELLmAAdyLd~   65 (65)
                      ++|.+|+|||+|+ |+..+..... ........++|+     |+|+++..+||++|||||++
T Consensus        57 V~s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdI  118 (169)
T 3v7d_A           57 VRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNI  118 (169)
T ss_dssp             CCHHHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            6899999999999 7666632110 000012257888     58999999999999999985

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=98.95  E-value=3.7e-10  Score=73.07  Aligned_cols=55  Identities=13%  Similarity=0.042  Sum_probs=35.0

Q ss_pred             eccchHHHHHHHh-hhhhcccCcccc--cccccCCCCC-----CCCChHHHHHHHHhhhhcCC
Q 042743           11 HASNDIDVGSEYF-EAVRFVNSLGSV--MLSIWGKETD-----FHIEPELTLELMMAANYLHT   65 (65)
Q Consensus        11 ~~S~vLekV~eYl-Yk~rY~~s~~~~--~~~~~~~iPe-----F~IppEiaLELLmAAdyLd~   65 (65)
                      ++|.+|+||++|+ |+..+......-  ......++|+     |+|+++..+||++|||||++
T Consensus        44 V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I  106 (141)
T 1fs1_B           44 VNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDI  106 (141)
T ss_dssp             CCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence            5799999999999 555553221000  0001246777     79999999999999999985

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=98.89  E-value=2.4e-10  Score=75.26  Aligned_cols=55  Identities=24%  Similarity=0.216  Sum_probs=20.7

Q ss_pred             eccchHHHHHHHh-hhhhcccCccc--cc-ccccCCCCCC-----CCChHHHHHHHHhhhhcCC
Q 042743           11 HASNDIDVGSEYF-EAVRFVNSLGS--VM-LSIWGKETDF-----HIEPELTLELMMAANYLHT   65 (65)
Q Consensus        11 ~~S~vLekV~eYl-Yk~rY~~s~~~--~~-~~~~~~iPeF-----~IppEiaLELLmAAdyLd~   65 (65)
                      ++|.+|+||++|+ |+..+......  .. .....++|+|     +|+++..+|||+|||||++
T Consensus        47 V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I  110 (160)
T 2p1m_A           47 VTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNI  110 (160)
T ss_dssp             SCHHHHHHHHHC------------------------------------------CHHHHHHTTC
T ss_pred             CcHHHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcCCHHHHHHHHHHHHHHhH
Confidence            6799999999999 55544211000  00 0112567876     8999999999999999985

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=93.85  E-value=0.062  Score=31.67  Aligned_cols=19  Identities=26%  Similarity=0.373  Sum_probs=16.3

Q ss_pred             CCChHHHHHHHHhhhhcCC
Q 042743           47 HIEPELTLELMMAANYLHT   65 (65)
Q Consensus        47 ~IppEiaLELLmAAdyLd~   65 (65)
                      +|+++.+.+||.||+++++
T Consensus        85 ~~~~~~v~~ll~~A~~~~i  103 (116)
T 2vpk_A           85 NLDSWNVKEIHQAADYLKV  103 (116)
T ss_dssp             CCCTTTHHHHHHHHHHTTC
T ss_pred             ccCHHHHHHHHHHHHHhCC
Confidence            3677899999999999974

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=93.76  E-value=0.058  Score=33.11  Aligned_cols=36  Identities=11%  Similarity=0.135  Sum_probs=26.3

Q ss_pred             ccchHHHHHHHhhhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743           12 ASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT   65 (65)
Q Consensus        12 ~S~vLekV~eYlYk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~   65 (65)
                      ...+++.+++|+|.-    .              .+|+++.+.+||.||++|++
T Consensus        69 ~~~~f~~lL~fiYtg----~--------------~~i~~~~v~~ll~~A~~l~i  104 (135)
T 2yy9_A           69 FAEIFGLLLDFFYTG----H--------------LALTSGNRDQVLLAAKELRV  104 (135)
T ss_dssp             GHHHHHHHHHHHHHS----C--------------CCCCTTTHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHhCC----C--------------CCCCHHHHHHHHHHHHHhCc
Confidence            345777788887741    1              24567889999999999974

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=93.70  E-value=0.085  Score=31.64  Aligned_cols=19  Identities=21%  Similarity=0.343  Sum_probs=16.7

Q ss_pred             CCChHHHHHHHHhhhhcCC
Q 042743           47 HIEPELTLELMMAANYLHT   65 (65)
Q Consensus        47 ~IppEiaLELLmAAdyLd~   65 (65)
                      .|+++.+.+||.||++|++
T Consensus        92 ~~~~~~~~~ll~~A~~l~i  110 (116)
T 3fkc_A           92 RVRSDLLDELIKSGQLLGV  110 (116)
T ss_dssp             SCCHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhCc
Confidence            3788999999999999874

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=93.62  E-value=0.08  Score=31.60  Aligned_cols=36  Identities=19%  Similarity=0.180  Sum_probs=25.5

Q ss_pred             ccchHHHHHHHhhhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743           12 ASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT   65 (65)
Q Consensus        12 ~S~vLekV~eYlYk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~   65 (65)
                      .+..++.+++|+|.    +           .   .+++++.+.+||.||+++++
T Consensus        71 ~~~~f~~ll~~~Yt----g-----------~---~~~~~~~~~~ll~~A~~~~i  106 (121)
T 1buo_A           71 SPKTFQQILEYAYT----A-----------T---LQAKAEDLDDLLYAAEILEI  106 (121)
T ss_dssp             CHHHHHHHHHHHHH----S-----------C---CCCCGGGHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhhcC----C-----------C---cCCCHHHHHHHHHHHHHHCC
Confidence            34566777777763    1           1   23677899999999999874

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=93.53  E-value=0.08  Score=31.25  Aligned_cols=19  Identities=16%  Similarity=0.204  Sum_probs=16.3

Q ss_pred             CCChHHHHHHHHhhhhcCC
Q 042743           47 HIEPELTLELMMAANYLHT   65 (65)
Q Consensus        47 ~IppEiaLELLmAAdyLd~   65 (65)
                      +++++.+.+||.+|+++++
T Consensus        90 ~~~~~~~~~ll~~A~~~~i  108 (120)
T 2if5_A           90 TVSTANVGDILSAARLLEI  108 (120)
T ss_dssp             CCCGGGHHHHHHHHHHTTC
T ss_pred             ccCHHHHHHHHHHHHHhCC
Confidence            3678899999999999874

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=93.38  E-value=0.08  Score=31.62  Aligned_cols=35  Identities=11%  Similarity=0.191  Sum_probs=24.6

Q ss_pred             cchHHHHHHHhhhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743           13 SNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT   65 (65)
Q Consensus        13 S~vLekV~eYlYk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~   65 (65)
                      +.+++.+++|+|.    +.              .+|+++.+.+||.||+++++
T Consensus        69 ~~~f~~ll~~iYt----g~--------------~~~~~~~v~~ll~~A~~~~i  103 (119)
T 3b84_A           69 AEIFGLLLDFFYT----GH--------------LALTSGNRDQVLLAARELRV  103 (119)
T ss_dssp             HHHHHHHHHHHHH----SC--------------CCCCTTTHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcC----CC--------------CccCHHHHHHHHHHHHHhCc
Confidence            4566777777763    11              13567789999999999974

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=93.20  E-value=0.089  Score=30.35  Aligned_cols=19  Identities=21%  Similarity=0.267  Sum_probs=16.3

Q ss_pred             CCChHHHHHHHHhhhhcCC
Q 042743           47 HIEPELTLELMMAANYLHT   65 (65)
Q Consensus        47 ~IppEiaLELLmAAdyLd~   65 (65)
                      +++++.+.+||.+|+++++
T Consensus        76 ~~~~~~~~~ll~~A~~~~~   94 (109)
T 2vkp_A           76 DLEADTVLATLYAAKKYIV   94 (109)
T ss_dssp             CCCTTTHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHHHhCc
Confidence            4677899999999999875

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=92.86  E-value=0.11  Score=31.00  Aligned_cols=19  Identities=21%  Similarity=0.462  Sum_probs=16.2

Q ss_pred             CCChHHHHHHHHhhhhcCC
Q 042743           47 HIEPELTLELMMAANYLHT   65 (65)
Q Consensus        47 ~IppEiaLELLmAAdyLd~   65 (65)
                      +|+++.+.+||.+|++|++
T Consensus        87 ~i~~~~~~~ll~~A~~l~i  105 (119)
T 2q81_A           87 SLSPENVDDVLAVATFLQM  105 (119)
T ss_dssp             CCCTTTHHHHHHHHHHTTC
T ss_pred             ccCHHHHHHHHHHHHHhCC
Confidence            4677889999999999974

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=92.43  E-value=0.12  Score=30.82  Aligned_cols=19  Identities=21%  Similarity=0.368  Sum_probs=16.1

Q ss_pred             CCChHHHHHHHHhhhhcCC
Q 042743           47 HIEPELTLELMMAANYLHT   65 (65)
Q Consensus        47 ~IppEiaLELLmAAdyLd~   65 (65)
                      +|+++.+.+||.+|+++++
T Consensus        94 ~~~~~~~~~ll~~A~~~~i  112 (127)
T 1r29_A           94 NLREGNIMAVMATAMYLQM  112 (127)
T ss_dssp             CCCTTTHHHHHHHHHHTTC
T ss_pred             CcCHHHHHHHHHHHHHhCC
Confidence            3577889999999999874

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=92.29  E-value=0.25  Score=30.27  Aligned_cols=19  Identities=16%  Similarity=0.086  Sum_probs=15.9

Q ss_pred             CCChHHHHHHHHhhhhcCC
Q 042743           47 HIEPELTLELMMAANYLHT   65 (65)
Q Consensus        47 ~IppEiaLELLmAAdyLd~   65 (65)
                      +++++.+.+||.+|+++++
T Consensus        99 ~~~~~~~~~ll~~A~~~~~  117 (172)
T 3htm_A           99 PNLDKMADDLLAAADKYAL  117 (172)
T ss_dssp             TTGGGTHHHHHHHHHHTTC
T ss_pred             CCcHHHHHHHHHHHHHhCc
Confidence            3677889999999999874

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=92.20  E-value=0.13  Score=31.93  Aligned_cols=19  Identities=16%  Similarity=0.281  Sum_probs=16.3

Q ss_pred             CCChHHHHHHHHhhhhcCC
Q 042743           47 HIEPELTLELMMAANYLHT   65 (65)
Q Consensus        47 ~IppEiaLELLmAAdyLd~   65 (65)
                      +|+++.+.+||.||++|++
T Consensus       114 ~i~~~~v~~ll~~A~~l~i  132 (144)
T 2ppi_A          114 RLNEDTIQDVVQAADLLLL  132 (144)
T ss_dssp             CCCTTTHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHhCc
Confidence            4677899999999999974

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=92.18  E-value=0.15  Score=30.52  Aligned_cols=36  Identities=8%  Similarity=-0.013  Sum_probs=25.2

Q ss_pred             ccchHHHHHHHhhhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743           12 ASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT   65 (65)
Q Consensus        12 ~S~vLekV~eYlYk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~   65 (65)
                      .+..++.+++|+|.-+               +   +++++.+.+||.+|+++++
T Consensus        73 ~~~~~~~~l~~~Y~~~---------------~---~~~~~~~~~ll~~A~~~~~  108 (145)
T 4eoz_A           73 EPEVFKEMMCFIYTGK---------------A---PNLDKMADDLLAAADKYAL  108 (145)
T ss_dssp             CHHHHHHHHHHHHHSC---------------C---TTGGGTHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHhhccCc---------------c---CCcHHHHHHHHHHHHHhCH
Confidence            4566677777776321               1   2567889999999999874

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=90.70  E-value=0.22  Score=30.35  Aligned_cols=19  Identities=11%  Similarity=0.162  Sum_probs=16.3

Q ss_pred             CCChHHHHHHHHhhhhcCC
Q 042743           47 HIEPELTLELMMAANYLHT   65 (65)
Q Consensus        47 ~IppEiaLELLmAAdyLd~   65 (65)
                      +|+++.+.+||.||++|++
T Consensus       100 ~i~~~~v~~ll~~A~~~~i  118 (138)
T 2z8h_A          100 ILSKDNVDEVCRCVEFLSV  118 (138)
T ss_dssp             CCCTTTHHHHHHHHHHHTC
T ss_pred             ccCHHHHHHHHHHHHHhCC
Confidence            4677889999999999975

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=90.00  E-value=0.19  Score=30.59  Aligned_cols=36  Identities=17%  Similarity=0.128  Sum_probs=26.4

Q ss_pred             ccchHHHHHHHhhhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743           12 ASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT   65 (65)
Q Consensus        12 ~S~vLekV~eYlYk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~   65 (65)
                      .+.+++.+++|+|.    +.              ..|+.+.+.+||.||++|++
T Consensus        69 ~~~~f~~ll~fiYt----g~--------------~~i~~~~v~~ll~aA~~l~i  104 (119)
T 3m5b_A           69 SPSTFAQLLNFVYG----ES--------------VELQPGELRPLQEAARALGV  104 (119)
T ss_dssp             CHHHHHHHHHHHTT----CC--------------EEECGGGHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHcC----CC--------------cCcCHHHHHHHHHHHHHhCC
Confidence            45677778888763    22              14567889999999999974

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=89.52  E-value=0.15  Score=30.35  Aligned_cols=19  Identities=21%  Similarity=0.301  Sum_probs=15.7

Q ss_pred             CCChHHHHHHHHhhhhcCC
Q 042743           47 HIEPELTLELMMAANYLHT   65 (65)
Q Consensus        47 ~IppEiaLELLmAAdyLd~   65 (65)
                      +|+++.+.+||.||++|++
T Consensus        96 ~~~~~~v~~ll~~A~~l~i  114 (125)
T 3ohu_A           96 LLSRENIREVIRCAEFLRM  114 (125)
T ss_dssp             EECTTTHHHHHHHHHHHTB
T ss_pred             EECHHHHHHHHHHHHHhCC
Confidence            3567788999999999874

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=88.44  E-value=0.23  Score=29.83  Aligned_cols=36  Identities=14%  Similarity=0.113  Sum_probs=24.7

Q ss_pred             ccchHHHHHHHhhhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743           12 ASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT   65 (65)
Q Consensus        12 ~S~vLekV~eYlYk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~   65 (65)
                      .+.+++.+++|+|.-+                  .+|+++.+.+||.||++|++
T Consensus        78 ~~~~f~~ll~~iYtg~------------------~~i~~~~~~~ll~~A~~~~i  113 (129)
T 3ga1_A           78 QPQSFQQILSFCYTGR------------------LSMNVGDQDLLMYTAGFLQI  113 (129)
T ss_dssp             CHHHHHHHHHHHHHSE------------------EECCTTTHHHHHHHHHHTTB
T ss_pred             CHHHHHHHHHHHhCCc------------------cccCHHHHHHHHHHHHHhCC
Confidence            3456667777766321                  13566778999999999874

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=87.21  E-value=0.23  Score=29.76  Aligned_cols=18  Identities=17%  Similarity=0.233  Sum_probs=15.2

Q ss_pred             CChHHHHHHHHhhhhcCC
Q 042743           48 IEPELTLELMMAANYLHT   65 (65)
Q Consensus        48 IppEiaLELLmAAdyLd~   65 (65)
                      |+++.+.+||.||+++++
T Consensus        94 i~~~~v~~ll~~A~~~~~  111 (124)
T 2ihc_A           94 LSKENVDEVCKCVEFLSV  111 (124)
T ss_dssp             EETTTHHHHHHHHHHHTB
T ss_pred             cCHHHHHHHHHHHHHHCC
Confidence            566789999999999874

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=84.40  E-value=0.73  Score=30.37  Aligned_cols=19  Identities=16%  Similarity=0.281  Sum_probs=15.1

Q ss_pred             CCChHHHHHHHHhhhhcCC
Q 042743           47 HIEPELTLELMMAANYLHT   65 (65)
Q Consensus        47 ~IppEiaLELLmAAdyLd~   65 (65)
                      +|+++.+.+||.||++|++
T Consensus        98 ~i~~~~v~~ll~~A~~l~i  116 (256)
T 3hve_A           98 RLNEDTIQDVVQAADLLLL  116 (256)
T ss_dssp             CCC-CCHHHHHHHHHHHTC
T ss_pred             cccHhHHHHHHHHHHHHCh
Confidence            3667889999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	65
d2c9wc1	96	d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens	5e-05
d1hv2a_	99	d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomy	3e-04

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 5e-05
 Identities = 12/19 (63%), Positives = 16/19 (84%)

Query: 45 DFHIEPELTLELMMAANYL 63
          +F I PE+ LEL+MAAN+L
Sbjct: 76 EFPIAPEIALELLMAANFL 94

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 99

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.6 bits (77), Expect = 3e-04
 Identities = 10/19 (52%), Positives = 16/19 (84%)

Query: 45 DFHIEPELTLELMMAANYL 63
          +F I  E++LEL++AA+YL
Sbjct: 79 EFEIPTEMSLELLLAADYL 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	65
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	99.5
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	94.57
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	94.28
d1fs1b1	55	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	93.89
d1nexa1	70	Centromere DNA-binding protein complex Cbf3 subuni	93.49
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	92.6
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	92.59

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.9e-19  Score=107.64  Aligned_cols=47  Identities=40%  Similarity=0.602  Sum_probs=41.7

Q ss_pred             eccchHHHHHHHh-hhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743           11 HASNDIDVGSEYF-EAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT   65 (65)
Q Consensus        11 ~~S~vLekV~eYl-Yk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~   65 (65)
                      ++|.+|+||+||+ |+++|.++.        .++|+|+||+++++||++|||||||
T Consensus        49 V~s~iL~kViey~~~h~~~~~~~--------~~~~~fdi~~~~l~eLi~AAnyLd~   96 (96)
T d2c9wc1          49 IPSHVLSKVCMYFTYKVRYTNSS--------TEIPEFPIAPEIALELLMAANFLDC   96 (96)
T ss_dssp             CCHHHHHHHHHHHHHHHHTC------------CCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHhhccCcCCc--------CCCCCCcCCHHHHHHHHHHHhhhcC
Confidence            6899999999999 999998875        6899999999999999999999998

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=4.1e-15  Score=90.86  Aligned_cols=50  Identities=26%  Similarity=0.431  Sum_probs=43.9

Q ss_pred             eccchHHHHHHHh-hhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743           11 HASNDIDVGSEYF-EAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT   65 (65)
Q Consensus        11 ~~S~vLekV~eYl-Yk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~   65 (65)
                      ++|.+|+|||||+ |+.+|.+...     ..+++|+|+|++++.+||++||||||+
T Consensus        49 V~s~iL~kViey~~~h~~~~~~~~-----~~~~~~efdvd~~~l~eLi~AAnyLdI   99 (99)
T d1hv2a_          49 FDSHILEKAVEYLNYNLKYSGVSE-----DDDEIPEFEIPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHCS-----SCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred             CChHHHHHHHHHHHHhhhCcCccc-----ccccCCCCCCCHHHHHHHHHHHhhhCC
Confidence            7899999999999 9999976532     236789999999999999999999985

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.0059  Score=33.69  Aligned_cols=17  Identities=0%  Similarity=-0.076  Sum_probs=14.1

Q ss_pred             eccchHHHHHHHhhhhh
Q 042743           11 HASNDIDVGSEYFEAVR   27 (65)
Q Consensus        11 ~~S~vLekV~eYlYk~r   27 (65)
                      +.|.+|+|||||+++|+
T Consensus        43 V~s~iL~kVieyc~~H~   59 (61)
T d1fs1b2          43 VNAAILKKVIQWCTHHK   59 (61)
T ss_dssp             CCHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHcc
Confidence            68999999999994444

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.28  E-value=0.0075  Score=33.89  Aligned_cols=15  Identities=13%  Similarity=-0.059  Sum_probs=13.4

Q ss_pred             eeccchHHHHHHHh-h
Q 042743           10 FHASNDIDVGSEYF-E   24 (65)
Q Consensus        10 ~~~S~vLekV~eYl-Y   24 (65)
                      -++|.+|+|||||+ |
T Consensus        50 ~V~s~iL~kVieyc~~   65 (72)
T d1nexa2          50 NVRSSVLQKVIEWAEH   65 (72)
T ss_dssp             TCCHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            46899999999999 5

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.016  Score=31.80  Aligned_cols=19  Identities=37%  Similarity=0.665  Sum_probs=16.8

Q ss_pred             CCChHHHHHHHHhhhhcCC
Q 042743           47 HIEPELTLELMMAANYLHT   65 (65)
Q Consensus        47 ~IppEiaLELLmAAdyLd~   65 (65)
                      +++...-.+|++|||||++
T Consensus         9 ~~d~~~Lf~Li~AAnyL~I   27 (55)
T d1fs1b1           9 KVDQGTLFELILAANYLDI   27 (55)
T ss_dssp             CSCHHHHHHHHHHHHHHTC
T ss_pred             HcCHHHHHHHHHHHHHcCc
Confidence            5778889999999999985

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.49  E-value=0.02  Score=32.55  Aligned_cols=19  Identities=37%  Similarity=0.772  Sum_probs=17.0

Q ss_pred             CCChHHHHHHHHhhhhcCC
Q 042743           47 HIEPELTLELMMAANYLHT   65 (65)
Q Consensus        47 ~IppEiaLELLmAAdyLd~   65 (65)
                      +++...-.+|+.|||||++
T Consensus        10 ~~d~~~L~~li~AAnyL~I   28 (70)
T d1nexa1          10 KVDQEMLYEIILAANYLNI   28 (70)
T ss_dssp             CSCHHHHHHHHHHHHHHTC
T ss_pred             hcCHHHHHHHHHHHHHcCc
Confidence            5788899999999999985

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.60  E-value=0.047  Score=31.68  Aligned_cols=19  Identities=21%  Similarity=0.368  Sum_probs=16.5

Q ss_pred             CCChHHHHHHHHhhhhcCC
Q 042743           47 HIEPELTLELMMAANYLHT   65 (65)
Q Consensus        47 ~IppEiaLELLmAAdyLd~   65 (65)
                      .|+.+.+.++|.||++|++
T Consensus        90 ~i~~~~v~~ll~~A~~l~i  108 (122)
T d1r29a_          90 NLREGNIMAVMATAMYLQM  108 (122)
T ss_dssp             CCCTTTHHHHHHHHHHTTC
T ss_pred             cCchhhHHHHHHHHHHHCc
Confidence            4778889999999999975

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.056  Score=31.85  Aligned_cols=19  Identities=26%  Similarity=0.253  Sum_probs=16.3

Q ss_pred             CCChHHHHHHHHhhhhcCC
Q 042743           47 HIEPELTLELMMAANYLHT   65 (65)
Q Consensus        47 ~IppEiaLELLmAAdyLd~   65 (65)
                      +++++...+|+.||++|++
T Consensus        88 ~l~~~~v~~ll~~A~~l~~  106 (121)
T d1buoa_          88 QAKAEDLDDLLYAAEILEI  106 (121)
T ss_dssp             CCCGGGHHHHHHHHHHHTC
T ss_pred             CCcHHHHHHHHHHHHHhCC
Confidence            4678889999999999874