Citrus Sinensis ID: 042873

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MASQALHPLYKNNSPTTSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIFGSGKNYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
masqalhplyknnspttshkpetkMISAKRAFRSLAFSISVPLSVTLAIICIFgsgknyralpkpfwfpplwfiHLATLSSSFFMSLAAWLVWAdggfharsDSLLLYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL
Flexible Loop (DISEMBL)
masqalhplyknnspttshkpeTKMISAKRAFRSLAFSISVPLSVTLAIICIFGSGKNYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL
Low Complexity Region (SEG)
MASQALHPLYKNNSPTTSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIFGSGKNYRAlpkpfwfpplwfIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL
Disordered region (IsUnstruct)
*****************************RAFRSLAFSISVPLSVTLAIICIFGSGKNYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIY*
Disordered Region (DISOPRED)
*******************************FRSLAFSISVPLSVTLAIICIFGSGKNYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL
Disordered Region (DISEMBL)
********LYKNNSPTTSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIFGSGKNYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL
Disordered Region (DISPRO)
****************************KRAFRSLAFSISVPLSVTLAIICIFGSGKNYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASQALHPLYKNNSPTTSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIFGSGKNYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
O82245	196	Translocator protein homo	yes	no	0.977	0.897	0.395	1e-33
P30536	169	Translocator protein OS=H	yes	no	0.777	0.828	0.306	4e-08
P16257	169	Translocator protein OS=R	yes	no	0.677	0.721	0.325	2e-07
P30535	169	Translocator protein OS=B	yes	no	0.788	0.840	0.308	6e-07
Q9GMC9	169	Translocator protein OS=O	N/A	no	0.705	0.751	0.340	1e-06
P50637	169	Translocator protein OS=M	yes	no	0.666	0.710	0.305	2e-06
Q6UN27	169	Translocator protein OS=S	yes	no	0.777	0.828	0.299	4e-06

>sp|O82245|TSPO_ARATH Translocator protein homolog OS=Arabidopsis thaliana GN=TSPO PE=1 SV=1

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/177 (39%), Positives = 99/177 (55%), Gaps = 1/177 (0%)

Query: 2   ASQALHPLYKNNSPTTSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIFGSGKNYRA 61
           A+ A+    + ++     K + K   AKR  +SL  +++ P+ VTL      G+   Y  
Sbjct: 17  ATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGTSDGYGN 76

Query: 62  LPKPF-WFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWDP 120
             K   W PPLW +H   L+SS  M LAAWLVW DGGFH + ++L LY+AQ  L ++WDP
Sbjct: 77  RAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDP 136

Query: 121 LVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKL 177
           +    G+   GL   +     L  CYK+F +++P A +LVKPCLAW  F+  VN KL
Sbjct: 137 VTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAVNVKL 193

Stress-induced membrane protein that can bind heme and may play a role in the transport of tetrapyrrole intermediates during salt stress and contribute to the detoxification of highly reactive porphyrins in the cytoplasm.
Arabidopsis thaliana (taxid: 3702)

>sp|P30536|TSPOA_HUMAN Translocator protein OS=Homo sapiens GN=TSPO PE=1 SV=3

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 7/147 (4%)

Query: 34  SLAFSISVPLSVTLAIICIFGSG-KNYRALPKPFWFPPLWFIH--LATLSSSFFMSLAAW 90
           ++ F+++  L   +    + G G + Y  L KP W PP W +     TL S+  M   ++
Sbjct: 8   AMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSA--MGYGSY 65

Query: 91  LVWAD-GGFHARSD-SLLLYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKS 148
           LVW + GGF  ++   L LY  Q++L+  W P+          LV  +   G   A   +
Sbjct: 66  LVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAAATTVA 125

Query: 149 FEKVNPFAKDLVKPCLAWMGFLTMVNY 175
           + +V+P A  L+ P LAW+ F T +NY
Sbjct: 126 WYQVSPLAARLLYPYLAWLAFTTTLNY 152

Responsible for the manifestation of peripheral-type benzodiazepine recognition sites and is most likely to comprise binding domains for benzodiazepines and isoquinoline carboxamides. May play a role in the transport of porphyrins and heme. Plays a role in the transport of cholesterol across mitochondrial membranes in steroidogenic cells.

Homo sapiens (taxid: 9606)

>sp|P16257|TSPO_RAT Translocator protein OS=Rattus norvegicus GN=Tspo PE=1 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 7/129 (5%)

Query: 52  IFGSG-KNYRALPKPFWFPPLWFIH--LATLSSSFFMSLAAWLVWAD-GGFHARSD-SLL 106
           + G G + Y +L KP W PP W +     TL S+  M   ++++W + GGF   +   L 
Sbjct: 26  VRGEGLRWYASLQKPSWHPPRWTLAPIWGTLYSA--MGYGSYIIWKELGGFTEEAMVPLG 83

Query: 107 LYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAW 166
           LY  Q++L+  W P+          LV  +   G   A   ++ +V+P A  L+ P LAW
Sbjct: 84  LYTGQLALNWAWPPIFFGARQMGWALVDLMLVSGVATATTLAWHRVSPPAARLLYPYLAW 143

Query: 167 MGFLTMVNY 175
           + F TM+NY
Sbjct: 144 LAFATMLNY 152

Responsible for the manifestation of peripheral-type benzodiazepine recognition sites and is most likely to comprise binding domains for benzodiazepines and isoquinoline carboxamides. May play a role in the transport of porphyrins and heme. Plays a role in the transport of cholesterol across mitochondrial membranes in steroidogenic cells.

Rattus norvegicus (taxid: 10116)

>sp|P30535|TSPO_BOVIN Translocator protein OS=Bos taurus GN=TSPO PE=2 SV=1

 Score = 53.9 bits (128), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 7/149 (4%)

Query: 34  SLAFSISVPLSVTLAIICIFGSG-KNYRALPKPFWFPPLWFIH--LATLSSSFFMSLAAW 90
           ++ F++   L   L      G G + Y +L KP W PP W +     TL S+  M   ++
Sbjct: 8   AVGFTLLPSLGGFLGAQYTRGEGFRWYASLQKPPWHPPRWILAPIWGTLYSA--MGYGSY 65

Query: 91  LVWAD-GGFHARSD-SLLLYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKS 148
           ++W + GGF   +   L LY  Q++L+  W PL   T      LV  +   G   A   +
Sbjct: 66  MIWKELGGFSKEAVVPLGLYAGQLALNWAWPPLFFGTRQMGWALVDLLLTGGMAAATAMA 125

Query: 149 FEKVNPFAKDLVKPCLAWMGFLTMVNYKL 177
           + +V+P A  L+ P LAW+ F  M+NY++
Sbjct: 126 WHQVSPPAACLLYPYLAWLAFAGMLNYRM 154

Responsible for the manifestation of peripheral-type benzodiazepine recognition sites and is most likely to comprise binding domains for benzodiazepines and isoquinoline carboxamides. May play a role in the transport of porphyrins and heme (By similarity). Plays a role in the transport of cholesterol across mitochondrial membranes in steroidogenic cells.

Bos taurus (taxid: 9913)

>sp|Q9GMC9|TSPO_SHEEP Translocator protein OS=Ovis aries GN=TSPO PE=1 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 11/138 (7%)

Query: 47  LAIICIFGSG-KNYRALPKPFWFPPLWFIH--LATLSSSFFMSLAAWLVWAD-GGFHARS 102
           L    I G G + Y +L KP W PP W +     TL S+  M   ++L+W + GGF   +
Sbjct: 21  LGTQYIRGEGFRWYASLQKPPWHPPRWILAPIWGTLYSA--MGYGSYLIWKELGGFSKEA 78

Query: 103 D-SLLLYVAQVSLSVLWDPLVLVTGAACLGLVFC--VAHFGTLVACYKSFEKVNPFAKDL 159
              L LY  Q++L+  W PL    GA  +G  F   +   G   A   ++ +V+P A  L
Sbjct: 79  VVPLGLYAGQLALNWAWPPLFF--GARQMGWAFVDLLLTGGMAAATAMAWRQVSPPAACL 136

Query: 160 VKPCLAWMGFLTMVNYKL 177
           + P LAW+ F  M+NY++
Sbjct: 137 LYPYLAWLAFAAMLNYRM 154

Responsible for the manifestation of peripheral-type benzodiazepine recognition sites and is most likely to comprise binding domains for benzodiazepines and isoquinoline carboxamides (By similarity). May play a role in the transport of porphyrins and heme (By similarity). Plays a role in the transport of cholesterol across mitochondrial membranes in steroidogenic cells.

Ovis aries (taxid: 9940)

>sp|P50637|TSPO_MOUSE Translocator protein OS=Mus musculus GN=Tspo PE=2 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 11/131 (8%)

Query: 52  IFGSG-KNYRALPKPFWFPPLWFIHLATLSSSFF--MSLAAWLVWAD-GGFHARSDSLL- 106
           + G G + Y +L KP W PP W   LA +  + +  M   +++VW + GGF    D+++ 
Sbjct: 26  VRGEGLRWYASLQKPSWHPPRW--TLAPIWGTLYSAMGYGSYIVWKELGGFT--EDAMVP 81

Query: 107 --LYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCL 164
             LY  Q++L+  W P+          L   +   G   A   ++ +V+P A  L+ P L
Sbjct: 82  LGLYTGQLALNWAWPPIFFGARQMGWALADLLLVSGVATATTLAWHRVSPPAARLLYPYL 141

Query: 165 AWMGFLTMVNY 175
           AW+ F T++NY
Sbjct: 142 AWLAFATVLNY 152

Responsible for the manifestation of peripheral-type benzodiazepine recognition sites and is most likely to comprise binding domains for benzodiazepines and isoquinoline carboxamides. May play a role in the transport of porphyrins and heme (By similarity). Plays a role in the transport of cholesterol across mitochondrial membranes in steroidogenic cells.

Mus musculus (taxid: 10090)

>sp|Q6UN27|TSPO_PIG Translocator protein OS=Sus scrofa GN=TSPO PE=2 SV=1

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 7/147 (4%)

Query: 34  SLAFSISVPLSVTLAIICIFGSGKN-YRALPKPFWFPPLWFIHLATLSSSFF--MSLAAW 90
           ++ F++   L   L+   + G G + Y  L KP W PP W   LA +  + +  M   ++
Sbjct: 8   AVGFTLVPSLGGFLSSRNVLGKGLHWYAGLQKPSWHPPHW--TLAPIWGTLYSAMGYGSY 65

Query: 91  LVWAD-GGFHARSD-SLLLYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKS 148
           ++W + GGF   +   L LY  Q++L+  W PL          LV  V   G   A   +
Sbjct: 66  MIWKELGGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGWALVDLVLTGGVAAATAVA 125

Query: 149 FEKVNPFAKDLVKPCLAWMGFLTMVNY 175
           + +V+P A  L+ P LAW+ F   +NY
Sbjct: 126 WYQVSPLAARLLYPYLAWLAFAATLNY 152

Responsible for the manifestation of peripheral-type benzodiazepine recognition sites and is most likely to comprise binding domains for benzodiazepines and isoquinoline carboxamides. May play a role in the transport of porphyrins and heme (By similarity). Plays a role in the transport of cholesterol across mitochondrial membranes in steroidogenic cells.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
356532573	167	PREDICTED: uncharacterized protein LOC10	0.922	0.994	0.563	3e-50
225432312	168	PREDICTED: uncharacterized protein LOC10	0.894	0.958	0.529	1e-45
224107327	180	predicted protein [Populus trichocarpa]	1.0	1.0	0.5	3e-44
225437310	185	PREDICTED: uncharacterized protein LOC10	0.994	0.967	0.483	4e-44
449433405	172	PREDICTED: translocator protein homolog	0.938	0.982	0.517	2e-43
224064430	197	predicted protein [Populus trichocarpa]	0.944	0.862	0.485	3e-43
224131166	199	predicted protein [Populus trichocarpa]	0.944	0.854	0.482	4e-42
255582174	190	peripheral-type benzodiazepine receptor,	0.988	0.936	0.463	1e-41
383932366	189	putative peripheral-type benzodiazepine	0.938	0.894	0.497	5e-39
50978430	192	peripheral-type benzodiazepine receptor	0.938	0.880	0.476	1e-38

>gi|356532573|ref|XP_003534846.1| PREDICTED: uncharacterized protein LOC100790873 [Glycine max]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 102/181 (56%), Positives = 127/181 (70%), Gaps = 15/181 (8%)

Query: 1   MASQALHPLYKNNSPTTSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIFGSGKNY- 59
           MASQ LH              +TK   A+RA RSLA  I+VP ++TL II +FGSG+ Y 
Sbjct: 1   MASQTLH--------------DTKKSQARRALRSLAIGIAVPFTLTLTIIILFGSGRKYN 46

Query: 60  RALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWD 119
           + + KPFWF PLWFIHL+ L SSFFM LAAWLVWADGGF   +D++ LY+A VSLS++W 
Sbjct: 47  QIISKPFWFAPLWFIHLSILGSSFFMGLAAWLVWADGGFQGETDAMSLYIAHVSLSIVWH 106

Query: 120 PLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIY 179
           PLVLV GA  L L+ C+ +F TL  CY  F KVNPFAKDL KPCLAW  +L +V++KLI+
Sbjct: 107 PLVLVMGAYWLALISCLVNFVTLFLCYLRFRKVNPFAKDLAKPCLAWAAYLCLVSFKLIF 166

Query: 180 L 180
           +
Sbjct: 167 I 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432312|ref|XP_002276187.1| PREDICTED: uncharacterized protein LOC100259718 [Vitis vinifera]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 120/170 (70%), Gaps = 9/170 (5%)

Query: 11  KNNSPTTSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIFGSGKNYRALPKPFWFPP 70
           ++ +PT  HK     IS  +    LA ++ VP+ +T+AII +FGS   YRA+ KPFWFPP
Sbjct: 8   EDQAPTHQHK-----ISLPK----LAVAVGVPVCLTMAIIFLFGSSHKYRAIAKPFWFPP 58

Query: 71  LWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWDPLVLVTGAACL 130
           LW +H+ +L  S  M ++AW VW++GGF   SD+L LYVA +SL ++W+PLV+V GAA +
Sbjct: 59  LWVMHVGSLVCSGLMGVSAWAVWSEGGFRGESDALPLYVAHISLGIVWEPLVVVMGAAWM 118

Query: 131 GLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL 180
           GL FCV HFGTLVACY +F  VNP   +LVKPCLAW+  LT + +KLIYL
Sbjct: 119 GLGFCVVHFGTLVACYSAFRNVNPVVGELVKPCLAWVAILTFLTFKLIYL 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107327|ref|XP_002314447.1| predicted protein [Populus trichocarpa] gi|222863487|gb|EEF00618.1| predicted protein [Populus trichocarpa]

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 90/180 (50%), Positives = 122/180 (67%)

Query: 1   MASQALHPLYKNNSPTTSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIFGSGKNYR 60
           MAS+ L  L + + P  +     K  + K +  SL   +  P S++L II +FGSG+ YR
Sbjct: 1   MASRTLKNLAEKDQPVLAKPKTRKTSNTKGSLWSLFMVLVAPPSLSLTIIYLFGSGRRYR 60

Query: 61  ALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWDP 120
           AL KP WFP L  IHL ++ S+F MSLAAWLVW + GFH  SD+L LY+AQ+SLS++WDP
Sbjct: 61  ALAKPSWFPSLTIIHLGSVGSTFLMSLAAWLVWTNDGFHVDSDALPLYIAQISLSMVWDP 120

Query: 121 LVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL 180
           LVL  GA  LG +F + + GTL+ACY +F KVNP +K  VKPCL W+ +LT+V + L++L
Sbjct: 121 LVLRIGAVWLGFLFSMLNLGTLLACYWAFGKVNPLSKKFVKPCLTWVAYLTLVTFDLMFL 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437310|ref|XP_002263702.1| PREDICTED: uncharacterized protein LOC100267613 [Vitis vinifera]

 Score =  182 bits (463), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 89/184 (48%), Positives = 119/184 (64%), Gaps = 5/184 (2%)

Query: 1   MASQALHPLYKNNSPT-----TSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIFGS 55
           MAS  L    K+   T      + K E KM  AKR  RSL  ++S+PLS+TL  I   G+
Sbjct: 1   MASTNLKQRIKDGPSTPFPTNNTTKREKKMAMAKRGLRSLTTAVSIPLSLTLVTIYFSGA 60

Query: 56  GKNYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLS 115
              YR LPKPFWFPPLW +H  +++SS  M L+AWLVWA+GGFH +  +L L+VAQ++LS
Sbjct: 61  TDRYRTLPKPFWFPPLWAVHATSMASSLLMGLSAWLVWAEGGFHKKPTALPLFVAQLALS 120

Query: 116 VLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNY 175
           ++ DP+V   G   +GLV C+  FG LV C + F +VNP A DLVKPCLAW  ++ +V  
Sbjct: 121 LIRDPIVFGYGGTRVGLVVCMGLFGALVGCARMFREVNPIAGDLVKPCLAWTAYVGVVTL 180

Query: 176 KLIY 179
           KL++
Sbjct: 181 KLLF 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433405|ref|XP_004134488.1| PREDICTED: translocator protein homolog [Cucumis sativus] gi|449529256|ref|XP_004171617.1| PREDICTED: translocator protein homolog [Cucumis sativus]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 122/170 (71%), Gaps = 1/170 (0%)

Query: 12  NNSPTTSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIFG-SGKNYRALPKPFWFPP 70
           +++P    +PE+K   AKRA RSLA S+++P+S+T+A I +FG S ++Y    +P W  P
Sbjct: 3   SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGP 62

Query: 71  LWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWDPLVLVTGAACL 130
           LW I L+++ SSF + LAAWLVWADGGFH  S++L LY+A +SLSV+W+PLVLV  +  +
Sbjct: 63  LWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVI 122

Query: 131 GLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL 180
             +FCV    TL ACY +F++VNPFAKDL+KPCLAW  +L+ V Y  I L
Sbjct: 123 AFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 172

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064430|ref|XP_002301472.1| predicted protein [Populus trichocarpa] gi|224100985|ref|XP_002334319.1| predicted protein [Populus trichocarpa] gi|222843198|gb|EEE80745.1| predicted protein [Populus trichocarpa] gi|222870389|gb|EEF07520.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 85/175 (48%), Positives = 117/175 (66%), Gaps = 5/175 (2%)

Query: 11  KNNSPTTSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIFGSGKNY-----RALPKP 65
           KNNS     + E ++  A+R  RSLA ++++PLS+ L  +  FGS K Y     R++ KP
Sbjct: 23  KNNSKNVRFRREKRVAMAQRGIRSLAIAVALPLSLALCNVYFFGSTKGYGTSSSRSISKP 82

Query: 66  FWFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWDPLVLVT 125
           FWFPPLW +H+  ++SSF M L+AWLVWA+GGFH    +L LY+ Q+ LS+ WDP+V   
Sbjct: 83  FWFPPLWALHMTCVTSSFLMGLSAWLVWAEGGFHRNPTALYLYLTQLGLSLAWDPIVFRM 142

Query: 126 GAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL 180
            A  +GL+ C+A FG LV C + F++VNP A +LV PCLAW  FL  VN KL++L
Sbjct: 143 SAPWVGLLVCLATFGALVGCSRQFKEVNPIAGNLVMPCLAWASFLAFVNLKLLFL 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131166|ref|XP_002321017.1| predicted protein [Populus trichocarpa] gi|222861790|gb|EEE99332.1| predicted protein [Populus trichocarpa]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 119/174 (68%), Gaps = 4/174 (2%)

Query: 11  KNNSPTTSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIFGSGKNYR----ALPKPF 66
           K+NS T   K E ++  AKR  RSLA ++++PLS+T++ +  FG+ + Y     ++  PF
Sbjct: 26  KDNSKTVRLKREKRVAMAKRGIRSLAIAVALPLSLTISNLYFFGTTRGYGTSTGSISMPF 85

Query: 67  WFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWDPLVLVTG 126
           WFPP W +HL  ++SSF M L+AWLVWA+GGFH    +L LY+AQ+ LS+ W+P+V    
Sbjct: 86  WFPPPWALHLTCMTSSFLMGLSAWLVWAEGGFHRNPAALYLYLAQLGLSLAWEPIVFRMA 145

Query: 127 AACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL 180
           A  +GL+ C+A F  LV C + F++VNP A DLVKPCLAW  FL +VN KL++L
Sbjct: 146 APWVGLLVCLATFAVLVGCSRQFKEVNPIAGDLVKPCLAWASFLAIVNLKLLFL 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582174|ref|XP_002531881.1| peripheral-type benzodiazepine receptor, putative [Ricinus communis] gi|223528489|gb|EEF30518.1| peripheral-type benzodiazepine receptor, putative [Ricinus communis]

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/192 (46%), Positives = 120/192 (62%), Gaps = 14/192 (7%)

Query: 1   MASQALHPLYKNNSPTTSHKP-----------ETKMISAKRAFRSLAFSISVPLSVTLAI 49
           M SQ++   ++   P  S  P           + +M  AKR  RSLA +++ PLS+TL  
Sbjct: 1   MDSQSIK--HRTKDPDQSDTPKETDMRSYSRRDKRMAMAKRGIRSLAIAVAFPLSLTLFN 58

Query: 50  ICIFGSGKNYRALP-KPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLY 108
           I  FGS   Y  L  KPFWFPP+W +H   L+SSF M L+AWLVWA+GGFH +  +L  Y
Sbjct: 59  IYFFGSRNGYGPLSTKPFWFPPMWALHFTCLASSFLMGLSAWLVWAEGGFHKKPAALSFY 118

Query: 109 VAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMG 168
           +AQ+ L ++WDP+V    A  +GLV C+A FG+LV C + F++VNP A DLVKP L W  
Sbjct: 119 LAQLGLGLIWDPIVFRMDATWVGLVVCLAMFGSLVGCSRQFKEVNPIAGDLVKPSLTWAA 178

Query: 169 FLTMVNYKLIYL 180
           FL +VN KL++L
Sbjct: 179 FLAIVNLKLVFL 190

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383932366|gb|AFH57280.1| putative peripheral-type benzodiazepine receptor [Gossypium hirsutum]

 Score =  166 bits (419), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 111/169 (65%)

Query: 12  NNSPTTSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIFGSGKNYRALPKPFWFPPL 71
           +N    +++ E +M  AKR  RSL  ++S PLS+TL  I +FGSG+ Y +L KPFWFPPL
Sbjct: 21  SNEKNRANRREKRMAMAKRGLRSLVIAVSFPLSLTLLNIYLFGSGRGYASLAKPFWFPPL 80

Query: 72  WFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWDPLVLVTGAACLG 131
           W +H   L+SSF M L+AW VW +GGFH +  +L LY+  + LS+ W P VL  GA+  G
Sbjct: 81  WLLHTGCLASSFLMGLSAWFVWVEGGFHVKPTALSLYLGYLGLSMAWHPTVLWMGASRAG 140

Query: 132 LVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL 180
           L+  +A  GTLV C + F KVNP A + V PCLAW  FL  VN KL++L
Sbjct: 141 LLVNLAMVGTLVGCSRDFRKVNPIAGNSVMPCLAWAAFLATVNLKLVFL 189

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50978430|emb|CAH10765.1| peripheral-type benzodiazepine receptor [Solanum tuberosum]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 81/170 (47%), Positives = 113/170 (66%), Gaps = 1/170 (0%)

Query: 1   MASQALHPLYKNNSPTTSH-KPETKMISAKRAFRSLAFSISVPLSVTLAIICIFGSGKNY 59
              Q     + N+S T  +    T+   AKR  +SL  ++++PL +TL  I +FGS   Y
Sbjct: 23  QTEQHTKSAHDNDSKTNKNINKSTRKQIAKRGLKSLTIALTIPLLLTLIDISLFGSSYQY 82

Query: 60  RALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWD 119
            ++ KPFWFP LW +HLA L SS  M L+AWLVWA+GGFH +  ++LLY++Q+ LS+ WD
Sbjct: 83  VSMEKPFWFPRLWALHLACLGSSLLMGLSAWLVWAEGGFHRKPMAMLLYLSQLGLSLAWD 142

Query: 120 PLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGF 169
           P+V  +GA  +GLV C+A FG L+AC+++F+ VNP A DLVKPC  W GF
Sbjct: 143 PVVFKSGATRIGLVLCMALFGVLIACFRAFKNVNPIAGDLVKPCFGWAGF 192

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:2043358	196	TSPO "TSPO(outer membrane tryp	0.977	0.897	0.361	2.4e-28
FB|FBgn0031263	185	CG2789 [Drosophila melanogaste	0.516	0.502	0.343	3.3e-08
UNIPROTKB|P30536	169	TSPO "Translocator protein" [H	0.522	0.556	0.352	8.7e-08
RGD|2228	169	Tspo "translocator protein" [R	0.522	0.556	0.343	8.7e-08
UNIPROTKB|P30535	169	TSPO "Translocator protein" [B	0.544	0.579	0.323	1.1e-07
UNIPROTKB|Q6UN27	169	TSPO "Translocator protein" [S	0.522	0.556	0.343	5e-07
UNIPROTKB|F1SJR8	169	TSPO "Translocator protein" [S	0.522	0.556	0.343	8e-07
UNIPROTKB|F1NZA2	167	TSPO "Uncharacterized protein"	0.544	0.586	0.313	1e-06
MGI|MGI:88222	169	Tspo "translocator protein" [M	0.511	0.544	0.326	2.2e-06
UNIPROTKB|E2RQH5	169	TSPO "Uncharacterized protein"	0.533	0.568	0.33	8.1e-06

TAIR|locus:2043358 TSPO "TSPO(outer membrane tryptophan-rich sensory protein)-related" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 64/177 (36%), Positives = 93/177 (52%)

Query:     2 ASQALHPLYKNNSPTTSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIFGSGKNY-R 60
             A+ A+    + ++     K + K   AKR  +SL  +++ P+ VTL      G+   Y  
Sbjct:    17 ATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGTSDGYGN 76

Query:    61 AXXXXXXXXXXXXIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWDP 120
                          +H   L+SS  M LAAWLVW DGGFH + ++L LY+AQ  L ++WDP
Sbjct:    77 RAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDP 136

Query:   121 LVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKL 177
             +    G+   GL   +     L  CYK+F +++P A +LVKPCLAW  F+  VN KL
Sbjct:   137 VTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAVNVKL 193

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005795 "Golgi stack" evidence=IDA

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006778 "porphyrin-containing compound metabolic process" evidence=IMP

GO:0020037 "heme binding" evidence=IDA

FB|FBgn0031263 CG2789 [Drosophila melanogaster (taxid:7227)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 33/96 (34%), Positives = 47/96 (48%)

Query:    85 MSLAAWLVWADGGFHARSDS---LLLYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGT 141
             M   ++LVW DGG  A   +   L+ Y  Q++L+  W P+         GL+  VA    
Sbjct:    65 MGYGSYLVWRDGGGFAGEAAKLPLIAYGTQLALNWAWTPIFFGQHNIKGGLIDIVALTAA 124

Query:   142 LVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKL 177
               AC   F +VN  A  L  P +AW+GF T +NY +
Sbjct:   125 ASACGVLFYRVNKTAGLLFVPYVAWLGFATALNYAI 160

GO:0008503 "benzodiazepine receptor activity" evidence=ISS

GO:0005740 "mitochondrial envelope" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P30536 TSPO "Translocator protein" [Homo sapiens (taxid:9606)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 36/102 (35%), Positives = 55/102 (53%)

Query:    78 TLSSSFFMSLAAWLVWAD-GGFHARSDSLL-LYVAQVSLSVLWDPLVLVTGAACLG--LV 133
             TL S+  M   ++LVW + GGF  ++   L LY  Q++L+  W P+    GA  +G  LV
Sbjct:    55 TLYSA--MGYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFF--GARQMGWALV 110

Query:   134 FCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNY 175
               +   G   A   ++ +V+P A  L+ P LAW+ F T +NY
Sbjct:   111 DLLLVSGAAAATTVAWYQVSPLAARLLYPYLAWLAFTTTLNY 152

GO:0016021 "integral to membrane" evidence=IEA

GO:0005497 "androgen binding" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0007568 "aging" evidence=IEA

GO:0008347 "glial cell migration" evidence=IEA

GO:0008503 "benzodiazepine receptor activity" evidence=IEA

GO:0010042 "response to manganese ion" evidence=IEA

GO:0010266 "response to vitamin B1" evidence=IEA

GO:0010940 "positive regulation of necrotic cell death" evidence=IEA

GO:0014012 "peripheral nervous system axon regeneration" evidence=IEA

GO:0030325 "adrenal gland development" evidence=IEA

GO:0032570 "response to progesterone stimulus" evidence=IEA

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IEA

GO:0033574 "response to testosterone stimulus" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0045019 "negative regulation of nitric oxide biosynthetic process" evidence=IEA

GO:0048266 "behavioral response to pain" evidence=IEA

GO:0050810 "regulation of steroid biosynthetic process" evidence=IEA

GO:0051901 "positive regulation of mitochondrial depolarization" evidence=IEA

GO:0051928 "positive regulation of calcium ion transport" evidence=IEA

GO:0060242 "contact inhibition" evidence=IEA

GO:0060252 "positive regulation of glial cell proliferation" evidence=IEA

GO:0060253 "negative regulation of glial cell proliferation" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0071294 "cellular response to zinc ion" evidence=IEA

GO:0071476 "cellular hypotonic response" evidence=IEA

GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0006783 "heme biosynthetic process" evidence=TAS

GO:0006820 "anion transport" evidence=TAS

GO:0008202 "steroid metabolic process" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0015485 "cholesterol binding" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0032374 "regulation of cholesterol transport" evidence=TAS

RGD|2228 Tspo "translocator protein" [Rattus norvegicus (taxid:10116)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 35/102 (34%), Positives = 55/102 (53%)

Query:    78 TLSSSFFMSLAAWLVWAD-GGFHARSDSLL-LYVAQVSLSVLWDPLVLVTGAACLG--LV 133
             TL S+  M   ++++W + GGF   +   L LY  Q++L+  W P+    GA  +G  LV
Sbjct:    55 TLYSA--MGYGSYIIWKELGGFTEEAMVPLGLYTGQLALNWAWPPIFF--GARQMGWALV 110

Query:   134 FCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNY 175
               +   G   A   ++ +V+P A  L+ P LAW+ F TM+NY
Sbjct:   111 DLMLVSGVATATTLAWHRVSPPAARLLYPYLAWLAFATMLNY 152

GO:0005497 "androgen binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=ISO;IDA;TAS

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0006694 "steroid biosynthetic process" evidence=IMP

GO:0006811 "ion transport" evidence=IDA

GO:0006821 "chloride transport" evidence=IDA

GO:0006950 "response to stress" evidence=IEP

GO:0007568 "aging" evidence=IEP

GO:0008347 "glial cell migration" evidence=IDA

GO:0008503 "benzodiazepine receptor activity" evidence=IDA

GO:0010042 "response to manganese ion" evidence=IEP

GO:0010266 "response to vitamin B1" evidence=IEP

GO:0010940 "positive regulation of necrotic cell death" evidence=IMP

GO:0014012 "peripheral nervous system axon regeneration" evidence=IEP

GO:0016021 "integral to membrane" evidence=IEA

GO:0030325 "adrenal gland development" evidence=IEP

GO:0032570 "response to progesterone stimulus" evidence=IEP

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IDA

GO:0033574 "response to testosterone stimulus" evidence=IEP

GO:0042493 "response to drug" evidence=IEP

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0045019 "negative regulation of nitric oxide biosynthetic process" evidence=IDA

GO:0048265 "response to pain" evidence=IEP

GO:0048266 "behavioral response to pain" evidence=IMP

GO:0048678 "response to axon injury" evidence=IEP

GO:0050810 "regulation of steroid biosynthetic process" evidence=IMP

GO:0051901 "positive regulation of mitochondrial depolarization" evidence=IDA

GO:0051928 "positive regulation of calcium ion transport" evidence=IMP

GO:0060242 "contact inhibition" evidence=IDA

GO:0060252 "positive regulation of glial cell proliferation" evidence=IDA

GO:0060253 "negative regulation of glial cell proliferation" evidence=IDA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEP

GO:0071294 "cellular response to zinc ion" evidence=IEP

GO:0071476 "cellular hypotonic response" evidence=IEP

GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=IDA

UNIPROTKB|P30535 TSPO "Translocator protein" [Bos taurus (taxid:9913)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 33/102 (32%), Positives = 53/102 (51%)

Query:    78 TLSSSFFMSLAAWLVWAD-GGFHARSDSLL-LYVAQVSLSVLWDPLVLVTGAACLGLVFC 135
             TL S+  M   ++++W + GGF   +   L LY  Q++L+  W PL   T      LV  
Sbjct:    55 TLYSA--MGYGSYMIWKELGGFSKEAVVPLGLYAGQLALNWAWPPLFFGTRQMGWALVDL 112

Query:   136 VAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKL 177
             +   G   A   ++ +V+P A  L+ P LAW+ F  M+NY++
Sbjct:   113 LLTGGMAAATAMAWHQVSPPAACLLYPYLAWLAFAGMLNYRM 154

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q6UN27 TSPO "Translocator protein" [Sus scrofa (taxid:9823)]

 Score = 118 (46.6 bits), Expect = 5.0e-07, P = 5.0e-07
 Identities = 35/102 (34%), Positives = 53/102 (51%)

Query:    78 TLSSSFFMSLAAWLVWAD-GGFHARSDSLL-LYVAQVSLSVLWDPLVLVTGAACLG--LV 133
             TL S+  M   ++++W + GGF   +   L LY  Q++L+  W PL    GA  +G  LV
Sbjct:    55 TLYSA--MGYGSYMIWKELGGFSEEAVVPLGLYAGQLALNWAWPPLFF--GARQMGWALV 110

Query:   134 FCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNY 175
               V   G   A   ++ +V+P A  L+ P LAW+ F   +NY
Sbjct:   111 DLVLTGGVAAATAVAWYQVSPLAARLLYPYLAWLAFAATLNY 152

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1SJR8 TSPO "Translocator protein" [Sus scrofa (taxid:9823)]

 Score = 117 (46.2 bits), Expect = 8.0e-07, P = 8.0e-07
 Identities = 35/102 (34%), Positives = 53/102 (51%)

Query:    78 TLSSSFFMSLAAWLVWAD-GGFHARSDSLL-LYVAQVSLSVLWDPLVLVTGAACLG--LV 133
             TL S+  M   ++++W + GGF   +   L LY  Q++L+  W PL    GA  +G  LV
Sbjct:    55 TLYSA--MGYGSYMIWKELGGFSEEAVVPLGLYAGQLALNWAWPPLFF--GARQMGWALV 110

Query:   134 FCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNY 175
               V   G   A   ++ +V+P A  L+ P LAW+ F   +NY
Sbjct:   111 DLVLTGGLAAATAVAWYQVSPLAARLLYPYLAWLAFAATLNY 152

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NZA2 TSPO "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 116 (45.9 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 32/102 (31%), Positives = 52/102 (50%)

Query:    78 TLSSSFFMSLAAWLVWAD-GGFHARSDSLL-LYVAQVSLSVLWDPLVLVTGAACLGLVFC 135
             TL +S  M   ++LVW + GGF  ++   L LY  Q++L+  W P+         GL   
Sbjct:    58 TLYTS--MGYGSYLVWKELGGFTEKAAVPLGLYAGQLALNWAWTPIFFGAHKMGWGLATL 115

Query:   136 VAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKL 177
             +   GT  A   S+  +N  A  L+ P LAW+   +++NY++
Sbjct:   116 LLTTGTATATTASWYHINRTAAYLMVPYLAWLTMASVLNYRI 157

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:88222 Tspo "translocator protein" [Mus musculus (taxid:10090)]

 Score = 115 (45.5 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 34/104 (32%), Positives = 56/104 (53%)

Query:    78 TLSSSFFMSLAAWLVWAD-GGFHARSDSLL---LYVAQVSLSVLWDPLVLVTGAACLG-- 131
             TL S+  M   +++VW + GGF    D+++   LY  Q++L+  W P+    GA  +G  
Sbjct:    55 TLYSA--MGYGSYIVWKELGGF--TEDAMVPLGLYTGQLALNWAWPPIFF--GARQMGWA 108

Query:   132 LVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNY 175
             L   +   G   A   ++ +V+P A  L+ P LAW+ F T++NY
Sbjct:   109 LADLLLVSGVATATTLAWHRVSPPAARLLYPYLAWLAFATVLNY 152

GO:0005497 "androgen binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=ISO

GO:0006694 "steroid biosynthetic process" evidence=ISO

GO:0006811 "ion transport" evidence=ISO

GO:0006821 "chloride transport" evidence=ISO

GO:0008347 "glial cell migration" evidence=ISO

GO:0008503 "benzodiazepine receptor activity" evidence=ISO

GO:0010940 "positive regulation of necrotic cell death" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0045019 "negative regulation of nitric oxide biosynthetic process" evidence=ISO

GO:0048266 "behavioral response to pain" evidence=ISO

GO:0050810 "regulation of steroid biosynthetic process" evidence=ISO

GO:0051901 "positive regulation of mitochondrial depolarization" evidence=ISO

GO:0051928 "positive regulation of calcium ion transport" evidence=ISO

GO:0060242 "contact inhibition" evidence=ISO

GO:0060252 "positive regulation of glial cell proliferation" evidence=ISO

GO:0060253 "negative regulation of glial cell proliferation" evidence=ISO

GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=ISO

UNIPROTKB|E2RQH5 TSPO "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 112 (44.5 bits), Expect = 8.1e-06, P = 8.1e-06
 Identities = 33/100 (33%), Positives = 50/100 (50%)

Query:    78 TLSSSFFMSLAAWLVWAD-GGFHARSDSLL-LYVAQVSLSVLWDPLVLVTGAACLGLVFC 135
             TL S+  M   +++VW + GGF   +   L LY  Q++L+  W PL   T      LV  
Sbjct:    55 TLYSA--MGYGSYMVWKELGGFSEEAVVPLGLYAGQLALNWAWPPLFFGTRQMGWALVDL 112

Query:   136 VAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNY 175
             +   G   A   ++ +V+P A  L+ P LAW+ F   +NY
Sbjct:   113 LLTGGLAGATAVAWHRVSPPAARLLYPYLAWLAFAAALNY 152

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82245	TSPO_ARATH	No assigned EC number	0.3954	0.9777	0.8979	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
pfam03073	147	pfam03073, TspO_MBR, TspO/MBR family	3e-13
COG3476	161	COG3476, COG3476, Tryptophan-rich sensory protein	2e-09

>gnl|CDD|217354 pfam03073, TspO_MBR, TspO/MBR family

 Score = 63.4 bits (155), Expect = 3e-13
 Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 2/147 (1%)

Query: 36  AFSISVPLSVTLAIICIFGSGKN-YRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWA 94
              I++ L+          +    Y +L KP W PP W            M +AA+LVW 
Sbjct: 1   LIFIAICLAAGFLGGLFTPTSSEWYASLRKPSWTPPNWVFGPVWTVLYILMGIAAYLVWR 60

Query: 95  DGGFHARSDSLL-LYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVN 153
            G    R    L L+  Q++L+ LW PL     +  L L+  +  +  ++A   +F +V+
Sbjct: 61  AGPGTKRRKLALALFALQLALNALWSPLFFGLHSPGLALIVILLLWLLVLATIVAFWRVS 120

Query: 154 PFAKDLVKPCLAWMGFLTMVNYKLIYL 180
             A  L+ P L W+ F T +NY +  L
Sbjct: 121 RLAALLLVPYLLWVSFATYLNYSIWRL 147

Tryptophan-rich sensory protein (TspO) is an integral membrane protein that acts as a negative regulator of the expression of specific photosynthesis genes in response to oxygen/light. It is involved in the efflux of porphyrin intermediates from the cell. This reduces the activity of coproporphyrinogen III oxidase, which is thought to lead to the accumulation of a putative repressor molecule that inhibits the expression of specific photosynthesis genes. Several conserved aromatic residues are necessary for TspO function: they are thought to be involved in binding porphyrin intermediates. In, the rat mitochondrial peripheral benzodiazepine receptor (MBR) was shown to not only retain its structure within a bacterial outer membrane, but also to be able to functionally substitute for TspO in TspO- mutants, and to act in a similar manner to TspO in its in situ location: the outer mitochondrial membrane. The biological significance of MBR remains unclear, however. It is thought to be involved in a variety of cellular functions, including cholesterol transport in steroidogenic tissues. Length = 147

>gnl|CDD|226007 COG3476, COG3476, Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 2/151 (1%)

Query: 32  FRSLAFSISVPLSVTLAIICIFGSGKN-YRALPKPFWFPPLWFIHLATLSSSFFMSLAAW 90
                  + V L+V L    I     N Y  L KPFW PP W            + ++A+
Sbjct: 6   KPLWLSILLVALAVALGSFFISSRDPNWYNNLKKPFWLPPEWAFPPVWTVLYALIGISAY 65

Query: 91  LVWADGGFHARSDSLL-LYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSF 149
           LVW  G     S  L+ LY+ Q+ L+  W P+     +    L+  +  +  ++      
Sbjct: 66  LVWEKGPGQGTSWLLMFLYLLQLILNFAWSPIFFGLRSLGAALIIILLLWIAVLVLTIIV 125

Query: 150 EKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL 180
             ++  A  L+ P L W  F T +N+ +  L
Sbjct: 126 WPISKTASLLLIPYLLWSPFATYLNFSIWQL 156

Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
PF03073	148	TspO_MBR: TspO/MBR family; InterPro: IPR004307 Mem	100.0
COG3476	161	Tryptophan-rich sensory protein (mitochondrial ben	100.0
PHA02980	160	hypothetical protein; Provisional	100.0
KOG3797	168	consensus Peripheral-type benzodiazepine receptor	100.0
PF07096	124	DUF1358: Protein of unknown function (DUF1358); In	90.22

>PF03073 TspO_MBR: TspO/MBR family; InterPro: IPR004307 Members of this group are involved in transmembrane signalling

Probab=100.00  E-value=9.6e-42  Score=266.96  Aligned_cols=144  Identities=31%  Similarity=0.540  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHHHHHHHhcC--CcccCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhcCC-CccchhHHHHHHHHHH
Q 042873           37 FSISVPLSVTLAIICIFGS--GKNYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGG-FHARSDSLLLYVAQVS  113 (180)
Q Consensus        37 ~~i~~~~~~g~~~~~~~~~--~~wY~~L~kP~w~PP~~vF~~vW~ily~lmg~a~~lv~~~~~-~~~~~~~l~ly~~ql~  113 (180)
                      +++++|.++|.++++++++  ++||++|+||+|+||+|+|+++|+++|++||+|+|++|++++ .++++.++.+|++|++
T Consensus         2 i~~~~~~~~~~~~~~~~~~~~~~wy~~L~kP~~~Pp~~~f~~vW~~ly~l~g~a~~~v~~~~~~~~~~~~~l~l~~~~l~   81 (148)
T PF03073_consen    2 IFIAAPLVVGFLSGYLTPTDVSEWYDSLKKPSWTPPGWVFGPVWTILYILMGIASYLVWRKGGGSPRRRRALALYAIQLA   81 (148)
T ss_pred             eeeHHHHHHHHHHHHHcCCcchHHHhhccCCCCCCcccHHHHHHHHHHHHHHHHHHhhHhcccCcchhHHHHHHHHHHHH
Confidence            5678899999999999875  578999999999999999999999999999999999999874 4455788999999999


Q ss_pred             hhhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHhHHHHHHHHHHHHHHHHHhC
Q 042873          114 LSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL  180 (180)
Q Consensus       114 lN~~Ws~lFF~~~~~~la~i~i~~l~~~~~~~~~~f~~i~~~Aa~LliPYl~W~~fAt~Ln~~i~~l  180 (180)
                      +|.+|+++||+.|++++|+++++++++++..++..++|+||.|+++++||++|++|||+||++++||
T Consensus        82 ln~~W~~ifF~~~~~~la~~~~~~l~~~~~~~~~~~~~~~~~a~~l~~Pyl~W~~fAt~Ln~~i~~L  148 (148)
T PF03073_consen   82 LNFAWSPIFFGLRSLGLALIIILALLGLLAALIFAFWKISRTAGLLLIPYLAWLSFATYLNFSIWRL  148 (148)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHhhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999997

In both prokaryotes and mitochondria they are localized to the outer membrane, and have been shown to bind and transport dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway [, ]. They are associated with the major outer membrane porins (in prokaryotes) and with the voltage-dependent anion channel (in mitochondria) []. Rhodobacter sphaeroides TspO (previously CrtK) is involved in signal transduction, functioning as a negative regulator of the expression of some photosynthesis genes (PpsR/AppA repressor/antirepressor regulon). This down-regulation is believed to be in response to oxygen levels. TspO works through (or modulates) the PpsR/AppA system and acts upstream of the site of action of these regulatory proteins []. It has been suggested that the TspO regulatory pathway works by regulating the efflux of certain tetrapyrrole intermediates of the haem/bacteriochlorophyll biosynthetic pathways in response to the availability of molecular oxygen, thereby causing the accumulation of a biosynthetic intermediate that serves as a corepressor for the regulated genes []. A homologue of the TspO protein in Rhizobium meliloti (Sinorhizobium meliloti) is involved in regulating expression of the ndi locus in response to stress conditions []. There is evidence that the S. meliloti TspO acts through, or in addition to, the FixL regulatory system. In animals, the peripheral-type benzodiazepine receptor (PBR, MBR) is a mitochondrial protein (located in the outer mitochondrial membrane) characterised by its ability to bind with nanomolar affinity to a variety of benzodiazepine-like drugs, as well as to dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway. Depending upon the tissue, it was shown to be involved in steroidogenesis, haem biosynthesis, apoptosis, cell growth and differentiation, mitochondrial respiratory control, and immune and stress response, but the precise function of the PBR remains unclear. The role of PBR in the regulation of cholesterol transport from the outer to the inner mitochondrial membrane, the rate-determining step in steroid biosynthesis, has been studied in detail. PBR is required for the binding, uptake and release, upon ligand activation, of the substrate cholesterol []. PBR forms a multimeric complex with the voltage-dependent anion channel (VDAC) [] and adenine nucleotide carrier []. Molecular modeling of PBR suggested that it might function as a channel for cholesterol. Indeed, cholesterol uptake and transport by bacterial cells was induced upon PBR expression. Mutagenesis studies identified a cholesterol recognition/interaction motif (CRAC) in the cytoplasmic C terminus of PBR [, ]. In complementation experiments, rat PBR (pk18) functionally substitutes for its homologue TspO in R. sphaeroides, negatively affecting transcription of specific photosynthesis genes []. This suggests that PBR may function as an oxygen sensor, transducing an oxygen-triggered signal leading to an adaptive cellular response. These observations suggest that fundamental aspects of this receptor and the downstream signal transduction pathway are conserved in bacteria and higher eukaryotic mitochondria. The alpha-3 subdivision of the purple bacteria is considered to be a likely source of the endosymbiont that ultimately gave rise to the mitochondrion. Therefore, it is possible that the mammalian PBR remains both evolutionarily and functionally related to the TspO of R. sphaeroides.; GO: 0016021 integral to membrane

>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]

Probab=100.00  E-value=8.9e-41  Score=263.91  Aligned_cols=147  Identities=23%  Similarity=0.375  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC--CcccCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhcCCCcc-chhHHHHHHH
Q 042873           34 SLAFSISVPLSVTLAIICIFGS--GKNYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHA-RSDSLLLYVA  110 (180)
Q Consensus        34 ~l~~~i~~~~~~g~~~~~~~~~--~~wY~~L~kP~w~PP~~vF~~vW~ily~lmg~a~~lv~~~~~~~~-~~~~l~ly~~  110 (180)
                      +...++++.++.+.++++++.+  .+||++|+||.|+||+|+||+||+++|++||+|+|++|+++..++ .+..+.+|.+
T Consensus         7 ~~~~~i~~~~~~~a~gs~~~~~~~~~wy~~L~kP~w~pp~~~f~~vWtvLy~l~~iSa~lvW~~~~~~~~~~~~~~ly~~   86 (161)
T COG3476           7 PLWLSILLVALAVALGSFFISSRDPNWYNNLKKPFWLPPEWAFPPVWTVLYALIGISAYLVWEKGPGQGTSWLLMFLYLL   86 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHhccCCCCCChHHHhhHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence            4556666666677777776543  358999999999999999999999999999999999999986544 5678899999


Q ss_pred             HHHhhhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHhHHHHHHHHHHHHHHHHHhC
Q 042873          111 QVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL  180 (180)
Q Consensus       111 ql~lN~~Ws~lFF~~~~~~la~i~i~~l~~~~~~~~~~f~~i~~~Aa~LliPYl~W~~fAt~Ln~~i~~l  180 (180)
                      |+++|++|+++||++|++++|+++++.+++++..++..++|+|+.|++|++||++|+.|||+||+.+++|
T Consensus        87 ql~ln~awspiff~l~~l~~a~i~~lll~~~vl~l~i~~~~~s~~As~LLiPYllW~~fat~L~~~i~~L  156 (161)
T COG3476          87 QLILNFAWSPIFFGLRSLGAALIIILLLWIAVLVLTIIVWPISKTASLLLIPYLLWSPFATYLNFSIWQL  156 (161)
T ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999975

>PHA02980 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-40  Score=263.40  Aligned_cols=121  Identities=18%  Similarity=0.239  Sum_probs=115.6

Q ss_pred             ccCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHHHH
Q 042873           58 NYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWDPLVLVTGAACLGLVFCVA  137 (180)
Q Consensus        58 wY~~L~kP~w~PP~~vF~~vW~ily~lmg~a~~lv~~~~~~~~~~~~l~ly~~ql~lN~~Ws~lFF~~~~~~la~i~i~~  137 (180)
                      .|++|+||+|+||+|+|||||+++|++||+|+|++|++++  +.+.++.+|++|+++|++|+++||+.|++++|++++++
T Consensus        32 ~Y~~L~KP~~~PP~wvF~pVWtiLY~lMgiA~~lvw~~~~--~~~~al~ly~~QL~LN~~WS~iFF~~~~~~lAli~ill  109 (160)
T PHA02980         32 NYTKSNKHLIFPPYYVRFSLYIISYIFMGHGMYLIHTRRR--DSNELIAYYILQLSINLSWFIVFYEMHMLRLSIAISTF  109 (160)
T ss_pred             CCccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Confidence            4999999999999999999999999999999999997732  25678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhChhHHHHHhHHHHHHHHHHHHHHHHHhC
Q 042873          138 HFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL  180 (180)
Q Consensus       138 l~~~~~~~~~~f~~i~~~Aa~LliPYl~W~~fAt~Ln~~i~~l  180 (180)
                      ++++++.++..|+|+|+.||+|++||++|++||++||++++++
T Consensus       110 L~~lv~~~~~~f~~i~~~Aa~LliPYl~Wv~FAt~LN~~I~~l  152 (160)
T PHA02980        110 SICLSVYNIYLWRFETDIIDKYVLPYLVTSYINLLLNYYIIRS  152 (160)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999985

>KOG3797 consensus Peripheral-type benzodiazepine receptor and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-39  Score=248.99  Aligned_cols=148  Identities=29%  Similarity=0.299  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhcCC-C--ccchhHHHHHH
Q 042873           33 RSLAFSISVPLSVTLAIICIFGSGKNYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGG-F--HARSDSLLLYV  109 (180)
Q Consensus        33 ~~l~~~i~~~~~~g~~~~~~~~~~~wY~~L~kP~w~PP~~vF~~vW~ily~lmg~a~~lv~~~~~-~--~~~~~~l~ly~  109 (180)
                      ++...++.+|.++|..++---...+||.+|+||+|.||++||+++|+.+|..||++||+||++++ +  +..+..+++|+
T Consensus        11 ~~~~~~~l~p~~~~~f~~~~q~~~~wya~lKkPs~~Pp~~vf~pvw~llys~mGYaSyLvyK~gggf~~naakl~lglYg   90 (168)
T KOG3797|consen   11 ISKNGASLVPVLGGWFIGNSQKPRKWYANLKKPSFHPPASVFGPVWTLLYSTMGYASYLVYKAGGGFITNAAKLPLGLYG   90 (168)
T ss_pred             hhhcceeecccceeEEecCCcchHHHHHhccCCCCCCccccccHHHHHHHcccccceeEEEecCCCcccccccchhHHHH
Confidence            34444777788877666511113589999999999999999999999999999999999999985 3  23467899999


Q ss_pred             HHHHhhhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHhHHHHHHHHHHHHHHHHHhC
Q 042873          110 AQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL  180 (180)
Q Consensus       110 ~ql~lN~~Ws~lFF~~~~~~la~i~i~~l~~~~~~~~~~f~~i~~~Aa~LliPYl~W~~fAt~Ln~~i~~l  180 (180)
                      .|+.+|++|.|+||+.++++++++|+.++.+.+.++.+.|+|++|+||.|++||++|+.||++||+.|++.
T Consensus        91 aqlaln~Aw~Pif~g~~~~g~~l~dl~~ls~aaaa~~~a~y~v~~tAglllvPylaWlafatyL~y~v~k~  161 (168)
T KOG3797|consen   91 AQLALNWAWMPIFFGLAKPGLALADLGILSGAAAALAVAWYPVAPTAGLLLVPYLAWLAFATYLNYNVWKE  161 (168)
T ss_pred             HHHHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHHhheeecCcccceeehHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999873

>PF07096 DUF1358: Protein of unknown function (DUF1358); InterPro: IPR009792 This family consists of several hypothetical eukaryotic proteins of around 125 residues in length

Probab=90.22  E-value=3.7  Score=31.58  Aligned_cols=92  Identities=9%  Similarity=-0.063  Sum_probs=50.1

Q ss_pred             CCcccccccccCCCCCCCCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc-------CCcccCCCCCCCCC-CC-h
Q 042873            1 MASQALHPLYKNNSPTTSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIFG-------SGKNYRALPKPFWF-PP-L   71 (180)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~l~~~i~~~~~~g~~~~~~~~-------~~~wY~~L~kP~w~-PP-~   71 (180)
                      |++|.-||-+..++-+...+.|+|..     ..+..+++......+.++|+.+.       +.+|+++-..+.=. |- +
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~FL~~Va~~s~~aGF~~tl~~aKKk~p~~F~kg~~~~~~l~esG   75 (124)
T PF07096_consen    1 METAVAEPGQSSSAKTEEGSEKSRKF-----LIKGGAFLGGVAGASALAGFGTTLALAKKKSPKWFSKGISQTKALHESG   75 (124)
T ss_pred             CCCCcCCCCCCCcccccccchhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHhccCcCcccCCcch
Confidence            89999999888665333333333333     33444455544455555554322       34566554333322 21 2


Q ss_pred             h--hHH-HHHHHHHHHHHHHH--HHHHhcCC
Q 042873           72 W--FIH-LATLSSSFFMSLAA--WLVWADGG   97 (180)
Q Consensus        72 ~--vF~-~vW~ily~lmg~a~--~lv~~~~~   97 (180)
                      -  +.. .-|..+|...|+..  +.+|+-.+
T Consensus        76 asLAlRALgWGTlyA~~GvG~l~~~iwK~~G  106 (124)
T PF07096_consen   76 ASLALRALGWGTLYAVCGVGVLVFGIWKLSG  106 (124)
T ss_pred             HHHHHHHHhHHHHHHHHhHHHHHHHHHHHhc
Confidence            2  222 25999999886664  66787654

The function of this family is unknown.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00