Citrus Sinensis ID: 042971


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80
WWAPAKFDPVKSPMLFFEKDKPVIPPVQPNVGLDMIQYVEKTARPGSIKLFRTQSPRHFEGVDWDQGGSCQRLQPLLPEQ
cccccccccccccEEEEccccccccccccccccHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccccc
cccccccccccccEEEEEccccccccccccHHHHHHHHHHHccccccEEEEEEccccHEEEEEEEccccccccccccccc
wwapakfdpvkspmlffekdkpvippvqpnvgldMIQYVEktarpgsiklfrtqsprhfegvdwdqggscqrlqpllpeq
wwapakfdpvkspMLFFEKDKPVIPPVQPNVGLDMIQYVEKTARPGSIKLFRTQSPRHfegvdwdqggscqrlqpllpeq
WWAPAKFDPVKSPMLFFEKDKPVIPPVQPNVGLDMIQYVEKTARPGSIKLFRTQSPRHFEGVDWDQGGSCQRLQPLLPEQ
*************MLFFEKDKPVIPPVQPNVGLDMIQYVEKTARPGSIKLFRT*****FEGVDW****************
WWA****DPVKSPMLFFEKDKPVIPPVQPNVGLDMIQYVEKTARPGSIKLFRTQSPRHFEGVDWDQGGSC**********
WWAPAKFDPVKSPMLFFEKDKPVIPPVQPNVGLDMIQYVEKTARPGSIKLFRTQSPRHFEGVDWDQGGSCQRLQPLLPEQ
WWAPAKFDPVKSPMLFFEKDKPVIPPVQPNVGLDMIQYVEKTARPGSIKLFRTQSPRHFEGVDWDQGGSCQR********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
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WWAPAKFDPVKSPMLFFEKDKPVIPPVQPNVGLDMIQYVEKTARPGSIKLFRTQSPRHFEGVDWDQGGSCQRLQPLLPEQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query80
15225951 412 trichome birefringence-like 13 protein [ 0.975 0.189 0.710 1e-29
224105809 407 predicted protein [Populus trichocarpa] 1.0 0.196 0.741 8e-29
297736366 315 unnamed protein product [Vitis vinifera] 1.0 0.253 0.705 2e-28
359475560 407 PREDICTED: uncharacterized protein LOC10 1.0 0.196 0.705 3e-27
356521269 410 PREDICTED: uncharacterized protein LOC10 1.0 0.195 0.682 2e-26
242050282 407 hypothetical protein SORBIDRAFT_02g03380 1.0 0.196 0.635 2e-25
147858857 422 hypothetical protein VITISV_006073 [Viti 1.0 0.189 0.705 9e-25
297831908 411 hypothetical protein ARALYDRAFT_480347 [ 0.975 0.189 0.686 2e-24
255562098 410 conserved hypothetical protein [Ricinus 1.0 0.195 0.717 2e-24
219362423 408 uncharacterized protein LOC100216985 [Ze 1.0 0.196 0.588 1e-23
>gi|15225951|ref|NP_179059.1| trichome birefringence-like 13 protein [Arabidopsis thaliana] gi|4263820|gb|AAD15463.1| hypothetical protein [Arabidopsis thaliana] gi|18650652|gb|AAL75895.1| At2g14530/T13P21.9 [Arabidopsis thaliana] gi|21700859|gb|AAM70553.1| At2g14530/T13P21.9 [Arabidopsis thaliana] gi|330251215|gb|AEC06309.1| trichome birefringence-like 13 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/83 (71%), Positives = 67/83 (80%), Gaps = 5/83 (6%)

Query: 1   WWAPAKFDPVKSPMLFFEKDKPVIPPVQPNVGLD-----MIQYVEKTARPGSIKLFRTQS 55
           WWAP+KFDPVKSPMLFFE  +P++PP+ P  GLD     M+ +VEKT RPG I  FRTQS
Sbjct: 241 WWAPSKFDPVKSPMLFFEGGRPILPPIPPATGLDRVLNNMVNFVEKTKRPGGIIFFRTQS 300

Query: 56  PRHFEGVDWDQGGSCQRLQPLLP 78
           PRHFEG DWDQGG+CQRLQPLLP
Sbjct: 301 PRHFEGGDWDQGGTCQRLQPLLP 323




Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105809|ref|XP_002313938.1| predicted protein [Populus trichocarpa] gi|222850346|gb|EEE87893.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297736366|emb|CBI25089.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359475560|ref|XP_003631702.1| PREDICTED: uncharacterized protein LOC100256594 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356521269|ref|XP_003529279.1| PREDICTED: uncharacterized protein LOC100802467 [Glycine max] Back     alignment and taxonomy information
>gi|242050282|ref|XP_002462885.1| hypothetical protein SORBIDRAFT_02g033800 [Sorghum bicolor] gi|241926262|gb|EER99406.1| hypothetical protein SORBIDRAFT_02g033800 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|147858857|emb|CAN78688.1| hypothetical protein VITISV_006073 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297831908|ref|XP_002883836.1| hypothetical protein ARALYDRAFT_480347 [Arabidopsis lyrata subsp. lyrata] gi|297329676|gb|EFH60095.1| hypothetical protein ARALYDRAFT_480347 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255562098|ref|XP_002522057.1| conserved hypothetical protein [Ricinus communis] gi|223538656|gb|EEF40257.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|219362423|ref|NP_001136835.1| uncharacterized protein LOC100216985 [Zea mays] gi|194697302|gb|ACF82735.1| unknown [Zea mays] gi|414886756|tpg|DAA62770.1| TPA: putative DUF231 domain containing family protein [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query80
TAIR|locus:2055200412 TBL13 "AT2G14530" [Arabidopsis 0.975 0.189 0.710 3.8e-30
TAIR|locus:2179386407 TBL12 "AT5G64470" [Arabidopsis 0.987 0.194 0.4 1.8e-12
TAIR|locus:2146062526 TBL21 "AT5G15890" [Arabidopsis 0.35 0.053 0.5 0.00043
TAIR|locus:2055200 TBL13 "AT2G14530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 59/83 (71%), Positives = 67/83 (80%)

Query:     1 WWAPAKFDPVKSPMLFFEKDKPVIPPVQPNVGLD-----MIQYVEKTARPGSIKLFRTQS 55
             WWAP+KFDPVKSPMLFFE  +P++PP+ P  GLD     M+ +VEKT RPG I  FRTQS
Sbjct:   241 WWAPSKFDPVKSPMLFFEGGRPILPPIPPATGLDRVLNNMVNFVEKTKRPGGIIFFRTQS 300

Query:    56 PRHFEGVDWDQGGSCQRLQPLLP 78
             PRHFEG DWDQGG+CQRLQPLLP
Sbjct:   301 PRHFEGGDWDQGGTCQRLQPLLP 323




GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2179386 TBL12 "AT5G64470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146062 TBL21 "AT5G15890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
AT2G14530
unknown protein; unknown protein; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF231, plant (InterPro-IPR004253); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G64470.2); Has 704 Blast hits to 689 proteins in 17 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 702; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (412 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query80
pfam13839270 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera 6e-07
>gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
 Score = 44.3 bits (105), Expect = 6e-07
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 50  LFRTQSPRHFEGVDWDQGGSCQRLQPLLPE 79
            FRT SP HFEG +W+ GGSC   +PLL  
Sbjct: 163 FFRTFSPVHFEGGEWNTGGSCYETEPLLGS 192


The PC-Esterase family is comprised of Cas1p, the Homo sapiens C7orf58, Arabidopsis thaliana PMR5 and a group of plant freezing resistance/coldacclimatization proteins typified by Arabidopsis thaliana ESKIMO1, animal FAM55D proteins, and animal FAM113 proteins. The PC-Esterase family has features that are both similar and different from the canonical GDSL/SGNH superfamily. The members of this family are predicted to have Acyl esterase activity and predicted to modify cell-surface biopolymers such as glycans and glycoproteins. The Cas1p protein has a Cas1_AcylT domain, in addition, with the opposing acyltransferase activity. The C7orf58 family has a ATP-Grasp domain fused to the PC-Esterase and is the first identified secreted tubulin-tyrosine ligase like enzyme in eukaryotes. The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich potential sugar binding domain followed by the PC-Esterase domain. Length = 270

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 80
PLN02629387 powdery mildew resistance 5 99.88
PF13839263 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f 98.73
>PLN02629 powdery mildew resistance 5 Back     alignment and domain information
Probab=99.88  E-value=7.6e-23  Score=152.61  Aligned_cols=76  Identities=20%  Similarity=0.473  Sum_probs=68.4

Q ss_pred             CCCCCCCCCCCCCceEeccCeeccCCCChHHHhH-----HHHHHHHh-CCCCceEEEEeccCCcccCCCCCCCC-----C
Q 042971            1 WWAPAKFDPVKSPMLFFEKDKPVIPPVQPNVGLD-----MIQYVEKT-ARPGSIKLFRTQSPRHFEGVDWDQGG-----S   69 (80)
Q Consensus         1 WW~~~~~~~~~~~~~y~~~g~~v~~~~~~~~a~r-----~~~wv~~~-~~~kt~vffrT~SP~Hfe~g~W~~Gg-----~   69 (80)
                      ||++.+.   +++++|++.|..++++|++.+|||     |++||+.+ ++.+++|||||+||+|||+|+||+||     +
T Consensus       216 Ww~~~~~---~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~SP~Hfe~g~Wn~gg~~~~~~  292 (387)
T PLN02629        216 WWSHQGS---LQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISPTHYNPSEWSAGASTTTKN  292 (387)
T ss_pred             ccCCCCe---eEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCcccccCCCcCCCCCCCCCC
Confidence            8999887   889999999999999999999998     88999987 78899999999999999999999875     5


Q ss_pred             cc-ccccCCCC
Q 042971           70 CQ-RLQPLLPE   79 (80)
Q Consensus        70 C~-~T~P~~~~   79 (80)
                      |+ +|+|+.++
T Consensus       293 C~~et~P~~~~  303 (387)
T PLN02629        293 CYGETTPMSGM  303 (387)
T ss_pred             CccCCccCcCc
Confidence            87 59998753



>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00