Citrus Sinensis ID: 042996

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MDLSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDGPNEGFAEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDIRDIPGLAPPAMARRLLSNPR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHEEEccccccccccccccccHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccccccccccccccccccHHHccccc
Coil and Loop (DISEMBL)
MDLSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVkdiegrndpetnkMLSEKKQSMVKELNSYVALKKQHQtnlennkrvdlfdgpnegfaeDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLvnpnnkdirdipglappAMARRLLSNPR
Flexible Loop (DISEMBL)
MDLSSISDDLAEINGQITDIFRALSNGFQklekikdvnrqsrqleeltdkmrECKRLIKefdrevkdiegrndpetnkmlsEKKQSMVKELNSYVALKKqhqtnlennkrvDLFDGPNEGFAEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNpnnkdirdipglappamarrllsnpr
Low Complexity Region (SEG)
MDLSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDGPNEGFAEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLivigviaiiivKLVNPNNKDIRDIPGLAPPAMARRLLSNPR
Disordered region (IsUnstruct)
***********EINGQITDIFRALSNGFQKL*******************************************************************************************************************************VHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDI********************
Disordered Region (DISOPRED)
******SDDLAEINGQITDIFRAL*******************************RLIKE*****************************************************************************************************TINVGTETAAV*******************FSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVN********************LLS***
Disordered Region (DISEMBL)
MDLSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDGPNEGFAEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDIRDIPGLAPPAMARRLLSNPR
Disordered Region (DISPRO)
****SISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDGPNEGFAEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDIRDIPGLAPPAMA********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLSSISDDLAEINGQITDIFRALSNGFQKLEKIKDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDGPNEGFAEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDIRDIPGLAPPAMARRLLSNPR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
Q944A9	265	Novel plant SNARE 11 OS=A	yes	no	0.984	0.969	0.784	1e-107
Q9LRP1	269	Novel plant SNARE 13 OS=A	no	no	0.961	0.933	0.703	1e-93
Q9LNH6	265	Novel plant SNARE 12 OS=A	no	no	0.961	0.947	0.687	3e-92
O88384	232	Vesicle transport through	yes	no	0.643	0.724	0.228	4e-05
Q2KIU0	232	Vesicle transport through	yes	no	0.425	0.478	0.216	0.0001
P58200	232	Vesicle transport through	yes	no	0.379	0.426	0.212	0.0006

>sp|Q944A9|NPS11_ARATH Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NPSN11 PE=1 SV=2

 Score =  386 bits (991), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/260 (78%), Positives = 234/260 (90%), Gaps = 3/260 (1%)

Query: 3   LSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFD 62
           +S++S++LAEI GQI DIFRALSNGFQKLEKIKD NRQSRQLEELTDKMR+CK LIK+FD
Sbjct: 4   ISAVSEELAEIEGQINDIFRALSNGFQKLEKIKDANRQSRQLEELTDKMRDCKSLIKDFD 63

Query: 63  REVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNL-ENNKRVDLFDGPNEGF 121
           RE+K +E  ND  TN+ML++++QSMVKELNSYVALKK++ +NL  NNKRVDLFDGP E  
Sbjct: 64  REIKSLESGNDASTNRMLNDRRQSMVKELNSYVALKKKYSSNLASNNKRVDLFDGPGEEH 123

Query: 122 AEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMS 181
            E+NVLLAS+M+NQ+LMD GN MMD+TDQAIER K++V ETINVGT+T+A LKAQTEQMS
Sbjct: 124 MEENVLLASNMSNQELMDKGNSMMDDTDQAIERGKKIVQETINVGTDTSAALKAQTEQMS 183

Query: 182 RIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDI 241
           R+VNELDSIHFS+KKAS+LVKEIGRQVATDKCIMA LFLIVIGVIAIIIVK+VNPNNKDI
Sbjct: 184 RVVNELDSIHFSLKKASKLVKEIGRQVATDKCIMAFLFLIVIGVIAIIIVKIVNPNNKDI 243

Query: 242 RDIP--GLAPPAMARRLLSN 259
           RDIP  GLAPPAM RRLL N
Sbjct: 244 RDIPGVGLAPPAMNRRLLWN 263

t-SNARE involved in diverse vesicle trafficking and membrane fusion processes, including cell plate formation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRP1|NPS13_ARATH Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NPSN13 PE=1 SV=1

 Score =  342 bits (878), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 180/256 (70%), Positives = 216/256 (84%), Gaps = 5/256 (1%)

Query: 6   ISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREV 65
           +S  L +I+G+I D FRAL+NGFQ+L+KIKD  RQS+QLEELTDKMRECKRL+KEFDRE+
Sbjct: 7   MSPQLEQIHGEIRDHFRALANGFQRLDKIKDSTRQSKQLEELTDKMRECKRLVKEFDREL 66

Query: 66  KDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDG----PNEGF 121
           KD E RN PE NK L+++KQSM+KELNSYVAL+K + + L  NK+V+LFD       E  
Sbjct: 67  KDEEARNSPEVNKQLNDEKQSMIKELNSYVALRKTYMSTL-GNKKVELFDMGAGVSGEPT 125

Query: 122 AEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMS 181
           AE+NV +ASSM+NQ+L+D+G + MDETDQAIERSKQVV +T+ VGT+TAA LK QT+QM 
Sbjct: 126 AEENVQVASSMSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQTDQMG 185

Query: 182 RIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDI 241
           R+VN LD+I FSIKKASQLVKEIGRQVATDKCIM  LFLIV GV+AIIIVK+VNPNNKDI
Sbjct: 186 RVVNHLDTIQFSIKKASQLVKEIGRQVATDKCIMGFLFLIVCGVVAIIIVKIVNPNNKDI 245

Query: 242 RDIPGLAPPAMARRLL 257
           RDIPGLAPPA +R+LL
Sbjct: 246 RDIPGLAPPAQSRKLL 261

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNH6|NPS12_ARATH Novel plant SNARE 12 OS=Arabidopsis thaliana GN=NPSN12 PE=2 SV=1

 Score =  338 bits (866), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 176/256 (68%), Positives = 218/256 (85%), Gaps = 5/256 (1%)

Query: 6   ISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREV 65
           +S  L +I+G+I D FRAL+NGFQ+L+KIKD +RQS+QLEEL +KMR+CKRL+KEFDRE+
Sbjct: 7   MSPHLEQIHGEIRDHFRALANGFQRLDKIKDSSRQSKQLEELAEKMRDCKRLVKEFDREL 66

Query: 66  KDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDG----PNEGF 121
           KD E RN P+ NK L+++KQSM+KELNSYVAL+K +   L  NK+V+LFD       E  
Sbjct: 67  KDGEARNSPQVNKQLNDEKQSMIKELNSYVALRKTYLNTL-GNKKVELFDTGAGVSGEPT 125

Query: 122 AEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMS 181
           AE+NV +AS+M+NQ+L+D+G + MDETDQAIERSKQVVH+T+ VGT+TA+ LK QT+QM 
Sbjct: 126 AEENVQMASTMSNQELVDAGMKRMDETDQAIERSKQVVHQTLEVGTQTASNLKGQTDQMG 185

Query: 182 RIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDI 241
           R+VN+LD+I FS+KKASQLVKEIGRQVATDKCIMA LFLIV GVIAIIIVK+VNPNNKDI
Sbjct: 186 RVVNDLDTIQFSLKKASQLVKEIGRQVATDKCIMAFLFLIVCGVIAIIIVKIVNPNNKDI 245

Query: 242 RDIPGLAPPAMARRLL 257
           RDIPGLAPPA +R+LL
Sbjct: 246 RDIPGLAPPAQSRKLL 261

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|O88384|VTI1B_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1B OS=Mus musculus GN=Vti1b PE=1 SV=1

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 94/197 (47%), Gaps = 29/197 (14%)

Query: 53  ECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQS-----------MVKELNSYVA-LKKQ 100
           E K+L+++FD         N  E N+ L+E ++            M+ +L +Y   L K 
Sbjct: 40  EKKKLVRDFDE--------NQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKL 91

Query: 101 HQ------TNLENNKRVDLFDGPNEGFAEDNVLLASSMTNQQLMDSGNRMMDETDQAIER 154
           H+             R DL  G    +  +N  L    + + L+  G   ++   Q+IER
Sbjct: 92  HREVRSTPLTAAPGGRGDLKYGT---YTLENEHLNRLQSQRALLLQGTESLNRATQSIER 148

Query: 155 SKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCI 214
           S ++  ET  +GTE    L  Q +Q+ R  + L + + ++ K+ ++++ + R+V T+K +
Sbjct: 149 SHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLL 208

Query: 215 MAMLFLIVIGVIAIIIV 231
           ++++ L+ + ++  ++ 
Sbjct: 209 LSVIILLELAILVGLVY 225

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers.

Mus musculus (taxid: 10090)

>sp|Q2KIU0|VTI1B_BOVIN Vesicle transport through interaction with t-SNAREs homolog 1B OS=Bos taurus GN=VTI1B PE=2 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/111 (21%), Positives = 62/111 (55%)

Query: 121 FAEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQM 180
           +A +N  +    + + L+  G   ++   Q+IERS ++  ET  +G+E    L  Q +Q+
Sbjct: 115 YAVENEHMNRLQSQRALLLQGTDSLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQL 174

Query: 181 SRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIV 231
            R  + L +   ++ K+ ++++ + R+V T+K +++++ L+ + ++  ++ 
Sbjct: 175 ERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLLSIVILLELAILGGLVY 225

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. May be concerned with increased secretion of cytokines associated with cellular senescence.

Bos taurus (taxid: 9913)

>sp|P58200|VTI1B_RAT Vesicle transport through interaction with t-SNAREs homolog 1B OS=Rattus norvegicus GN=Vti1b PE=1 SV=2

 Score = 45.1 bits (105), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/99 (21%), Positives = 58/99 (58%)

Query: 133 TNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHF 192
           + + L+  G   ++   Q+IERS ++  ET  +G+E    L  Q +Q+ R  + L + + 
Sbjct: 127 SQRALLLQGTESLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKSRLVNTNE 186

Query: 193 SIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIV 231
           ++ K+ ++++ + R+V T+K +++++ ++ + ++  ++ 
Sbjct: 187 NLSKSRKILRSMSRKVITNKLLLSVIIVLELAILVGLVY 225

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
224126593	266	predicted protein [Populus trichocarpa]	0.988	0.969	0.875	1e-120
224137988	262	predicted protein [Populus trichocarpa]	0.988	0.984	0.852	1e-118
255552932	272	novel plant snare, putative [Ricinus com	0.988	0.948	0.844	1e-117
225427372	261	PREDICTED: novel plant SNARE 11 [Vitis v	0.984	0.984	0.833	1e-115
147835746	261	hypothetical protein VITISV_030969 [Viti	0.984	0.984	0.833	1e-115
449459022	261	PREDICTED: novel plant SNARE 11-like [Cu	0.980	0.980	0.828	1e-113
356563416	261	PREDICTED: novel plant SNARE 11-like [Gl	0.973	0.973	0.819	1e-109
255637841	261	unknown [Glycine max]	0.973	0.973	0.807	1e-108
297823307	263	NPSN11 [Arabidopsis lyrata subsp. lyrata	0.984	0.977	0.786	1e-106
18403771	265	Novel plant SNARE 11 [Arabidopsis thalia	0.984	0.969	0.784	1e-105

>gi|224126593|ref|XP_002329593.1| predicted protein [Populus trichocarpa] gi|222870302|gb|EEF07433.1| predicted protein [Populus trichocarpa]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/258 (87%), Positives = 244/258 (94%)

Query: 3   LSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFD 62
           LSSIS++LAEINGQI DIFRALSNGFQKLEKIKDVNRQSRQLEELT K+RECKRLIKEFD
Sbjct: 4   LSSISEELAEINGQIADIFRALSNGFQKLEKIKDVNRQSRQLEELTGKLRECKRLIKEFD 63

Query: 63  REVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDGPNEGFA 122
           RE+KD+E RNDP+TNKML+EKKQSM+KELNSYVALKKQ+ TNLENNKRVDLFDGPNE   
Sbjct: 64  REMKDMESRNDPDTNKMLNEKKQSMIKELNSYVALKKQYATNLENNKRVDLFDGPNEELH 123

Query: 123 EDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSR 182
           +DNVLLASSMTNQQL+D GN+MMDETDQAIER K+VV +TINVGTETAA LKAQTEQMSR
Sbjct: 124 DDNVLLASSMTNQQLVDHGNQMMDETDQAIERGKKVVQDTINVGTETAAALKAQTEQMSR 183

Query: 183 IVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDIR 242
           IVNELDSIHFSIKKASQLVKEIGRQVATDKCIMA+LFLIV+GVIAIIIVKLVNP+NKDIR
Sbjct: 184 IVNELDSIHFSIKKASQLVKEIGRQVATDKCIMALLFLIVVGVIAIIIVKLVNPSNKDIR 243

Query: 243 DIPGLAPPAMARRLLSNP 260
           DIPGLAPPA +RRLL  P
Sbjct: 244 DIPGLAPPAPSRRLLWIP 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137988|ref|XP_002326490.1| predicted protein [Populus trichocarpa] gi|222833812|gb|EEE72289.1| predicted protein [Populus trichocarpa]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/258 (85%), Positives = 240/258 (93%)

Query: 3   LSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFD 62
           LSSIS++LAEINGQ+ DIFRALS GFQ LEKIKD NRQSRQL+ELT KMRECKRLIKEFD
Sbjct: 4   LSSISEELAEINGQVADIFRALSKGFQNLEKIKDANRQSRQLDELTGKMRECKRLIKEFD 63

Query: 63  REVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDGPNEGFA 122
           REVKD+E RNDP+TNKML+EKKQSMVKELNSYVALKKQ+ TNLENNKRVDLFDGPNE   
Sbjct: 64  REVKDMESRNDPDTNKMLNEKKQSMVKELNSYVALKKQYATNLENNKRVDLFDGPNEELH 123

Query: 123 EDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSR 182
           ++NVLLASSMTNQQ+MD GN+MMDETDQAIER K+VV +T+NVG ETA  LKAQTEQMSR
Sbjct: 124 DNNVLLASSMTNQQIMDHGNQMMDETDQAIERGKKVVQDTVNVGRETAEALKAQTEQMSR 183

Query: 183 IVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDIR 242
           IVNELDSIHFSIKKAS++VKEIGRQVATDKCIMA+LFL+VIGVIAIIIVKLVNPNNKDIR
Sbjct: 184 IVNELDSIHFSIKKASKMVKEIGRQVATDKCIMALLFLVVIGVIAIIIVKLVNPNNKDIR 243

Query: 243 DIPGLAPPAMARRLLSNP 260
           DIPGLAPPA +RRLL NP
Sbjct: 244 DIPGLAPPAQSRRLLWNP 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552932|ref|XP_002517509.1| novel plant snare, putative [Ricinus communis] gi|223543520|gb|EEF45051.1| novel plant snare, putative [Ricinus communis]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/258 (84%), Positives = 240/258 (93%)

Query: 3   LSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFD 62
           +S++S++L +I+GQI DIFRALSNGFQKLEKIKDVNRQSRQLEELT KM++CKRLIK+FD
Sbjct: 4   ISAVSEELGQIDGQIADIFRALSNGFQKLEKIKDVNRQSRQLEELTGKMKDCKRLIKDFD 63

Query: 63  REVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDGPNEGFA 122
           REVKD+E RNDP TN+ML+EKKQSM+KELNSYVALKKQ+  NLENNKRVDLFDGP E   
Sbjct: 64  REVKDLENRNDPNTNRMLNEKKQSMIKELNSYVALKKQYAANLENNKRVDLFDGPGEELN 123

Query: 123 EDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSR 182
           E+NVLLASSMTNQQLMD+GN+MMDETDQAIER K++V ETINVGT+TAA LKAQTEQMSR
Sbjct: 124 EENVLLASSMTNQQLMDNGNQMMDETDQAIERGKKIVQETINVGTDTAAALKAQTEQMSR 183

Query: 183 IVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDIR 242
           IVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIV GVIAIIIVKLVNPNNKDIR
Sbjct: 184 IVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVAGVIAIIIVKLVNPNNKDIR 243

Query: 243 DIPGLAPPAMARRLLSNP 260
           DIPGLAPPA  RRLL +P
Sbjct: 244 DIPGLAPPAQNRRLLWHP 261

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427372|ref|XP_002282944.1| PREDICTED: novel plant SNARE 11 [Vitis vinifera] gi|297742193|emb|CBI33980.3| unnamed protein product [Vitis vinifera]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/258 (83%), Positives = 242/258 (93%), Gaps = 1/258 (0%)

Query: 3   LSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFD 62
           L+ IS++LAEI+GQI+DIFRALSNGFQKLEKIKD +RQSRQLEELT KMRECKRLIKEFD
Sbjct: 4   LAGISEELAEIDGQISDIFRALSNGFQKLEKIKDTSRQSRQLEELTGKMRECKRLIKEFD 63

Query: 63  REVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDGPNEGFA 122
           REVKD+E RNDPETNKML+EKKQSM+KELNSYVALKKQ+ TNLEN KR+DLFD P +   
Sbjct: 64  REVKDLEIRNDPETNKMLNEKKQSMIKELNSYVALKKQYATNLEN-KRIDLFDAPADDVG 122

Query: 123 EDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSR 182
           E+NVLLASSMTNQQLMD+GNRMMDETDQ IERSK+VV +T+NVGTETAA LK+QTEQMSR
Sbjct: 123 EENVLLASSMTNQQLMDNGNRMMDETDQVIERSKKVVQDTVNVGTETAAALKSQTEQMSR 182

Query: 183 IVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDIR 242
           IVNELDSIHFSIKKASQLVKEIGRQVATD+CIMA+LF++VIGVIA+IIVKLVNPNNKDIR
Sbjct: 183 IVNELDSIHFSIKKASQLVKEIGRQVATDRCIMALLFILVIGVIAVIIVKLVNPNNKDIR 242

Query: 243 DIPGLAPPAMARRLLSNP 260
           D+PGLAPPA+ R+LL +P
Sbjct: 243 DVPGLAPPALTRKLLWHP 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147835746|emb|CAN77481.1| hypothetical protein VITISV_030969 [Vitis vinifera]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/258 (83%), Positives = 241/258 (93%), Gaps = 1/258 (0%)

Query: 3   LSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFD 62
           L+ IS++LAEI+GQI+DIFRALSNGFQKLEKIKD +RQSRQLEELT KMRECKRLIKEFD
Sbjct: 4   LAGISEELAEIDGQISDIFRALSNGFQKLEKIKDTSRQSRQLEELTGKMRECKRLIKEFD 63

Query: 63  REVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDGPNEGFA 122
           REVKD+E RNDPETNKML+EKKQSM KELNSYVALKKQ+ TNLEN KR+DLFD P +   
Sbjct: 64  REVKDLEIRNDPETNKMLNEKKQSMXKELNSYVALKKQYATNLEN-KRIDLFDAPADDVG 122

Query: 123 EDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSR 182
           E+NVLLASSMTNQQLMD+GNRMMDETDQ IERSK+VV +T+NVGTETAA LK+QTEQMSR
Sbjct: 123 EENVLLASSMTNQQLMDNGNRMMDETDQVIERSKKVVQDTVNVGTETAAALKSQTEQMSR 182

Query: 183 IVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDIR 242
           IVNELDSIHFSIKKASQLVKEIGRQVATD+CIMA+LF++VIGVIA+IIVKLVNPNNKDIR
Sbjct: 183 IVNELDSIHFSIKKASQLVKEIGRQVATDRCIMALLFILVIGVIAVIIVKLVNPNNKDIR 242

Query: 243 DIPGLAPPAMARRLLSNP 260
           D+PGLAPPA+ R+LL +P
Sbjct: 243 DVPGLAPPALTRKLLWHP 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459022|ref|XP_004147245.1| PREDICTED: novel plant SNARE 11-like [Cucumis sativus]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/257 (82%), Positives = 240/257 (93%), Gaps = 1/257 (0%)

Query: 3   LSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFD 62
           LSSIS++LA+I GQI DIFRALSNGFQKLEKIKD NR+SRQLEELTDKMRECKRLIK+FD
Sbjct: 4   LSSISEELADIEGQINDIFRALSNGFQKLEKIKDSNRRSRQLEELTDKMRECKRLIKDFD 63

Query: 63  REVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDGPNEGFA 122
           REVKD+EG N+  TNKMLSEKKQSM+KELNSYVALKKQH + L+N KR+DLFDGP E + 
Sbjct: 64  REVKDLEGGNNANTNKMLSEKKQSMIKELNSYVALKKQHASTLDN-KRIDLFDGPGESYG 122

Query: 123 EDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSR 182
           E+NVLLAS+MTNQQL+D+GNRMMDETD+AIERSK+VV ET+NVGTETAA LKAQT+QMSR
Sbjct: 123 EENVLLASNMTNQQLIDNGNRMMDETDEAIERSKKVVQETVNVGTETAAALKAQTDQMSR 182

Query: 183 IVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDIR 242
           IVNELDSIHFS+KKAS+LVKE+GRQVATDKCIMA+LF+IVIGVIAIIIVKLVNPNNKDIR
Sbjct: 183 IVNELDSIHFSLKKASKLVKELGRQVATDKCIMALLFIIVIGVIAIIIVKLVNPNNKDIR 242

Query: 243 DIPGLAPPAMARRLLSN 259
           DIPGLAPP  +R+LL N
Sbjct: 243 DIPGLAPPVQSRKLLWN 259

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563416|ref|XP_003549959.1| PREDICTED: novel plant SNARE 11-like [Glycine max]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/255 (81%), Positives = 235/255 (92%), Gaps = 1/255 (0%)

Query: 3   LSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFD 62
           LS+IS+DLAEI+G I D FRALSNGFQKLEKIKD NRQSRQLE+LT+K+RECKRLIKEFD
Sbjct: 4   LSAISEDLAEIDGHIADNFRALSNGFQKLEKIKDSNRQSRQLEDLTEKLRECKRLIKEFD 63

Query: 63  REVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDGPNEGFA 122
           +EVK +E   D ETNKML+EKKQSM+KELNSYVALKKQ+ TN+EN KR++LF+GPNEG+A
Sbjct: 64  KEVKTLESSFDRETNKMLNEKKQSMIKELNSYVALKKQYATNIEN-KRIELFEGPNEGYA 122

Query: 123 EDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSR 182
           E+N LLASSMTN+QLMD GNRMM+ETDQAIER K+VV +TINVGT+TAA LKAQTEQMSR
Sbjct: 123 EENGLLASSMTNEQLMDHGNRMMNETDQAIERGKKVVQDTINVGTDTAAALKAQTEQMSR 182

Query: 183 IVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDIR 242
           +VNELDSIHFSIKKAS+LVKEIGRQVATDKCIMA+LFLIVIGVIAIIIVKLV+P NKDIR
Sbjct: 183 VVNELDSIHFSIKKASKLVKEIGRQVATDKCIMALLFLIVIGVIAIIIVKLVHPENKDIR 242

Query: 243 DIPGLAPPAMARRLL 257
           DIPGLAPP   RRLL
Sbjct: 243 DIPGLAPPVQNRRLL 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637841|gb|ACU19240.1| unknown [Glycine max]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/255 (80%), Positives = 234/255 (91%), Gaps = 1/255 (0%)

Query: 3   LSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFD 62
           LS+IS+DLAEI+G I D FRALSNGFQKLEKIKD NRQ+RQLE+LT+K+RECKRLIKEFD
Sbjct: 4   LSAISEDLAEIDGHIADNFRALSNGFQKLEKIKDSNRQTRQLEDLTEKLRECKRLIKEFD 63

Query: 63  REVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDGPNEGFA 122
           +EVK +E   D ETNKML+EKKQSM+KELNSYV LKKQ+ TN+EN KR++LF+GPNEG+ 
Sbjct: 64  KEVKTLENSFDRETNKMLNEKKQSMIKELNSYVGLKKQYATNIEN-KRIELFEGPNEGYT 122

Query: 123 EDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSR 182
           E+N LLASSMTN+QLMD GNRMMDETDQAIER K+VV +TINVGT+TAA LKAQTEQMSR
Sbjct: 123 EENGLLASSMTNEQLMDHGNRMMDETDQAIERGKKVVQDTINVGTDTAAALKAQTEQMSR 182

Query: 183 IVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDIR 242
           +VNELDSIHFS+KKAS+LVKEIGRQVATDKCIMA+LFLIVIGVIAIIIVKLV+P+NKDIR
Sbjct: 183 VVNELDSIHFSMKKASKLVKEIGRQVATDKCIMALLFLIVIGVIAIIIVKLVHPDNKDIR 242

Query: 243 DIPGLAPPAMARRLL 257
           DIPGLAPP   RRLL
Sbjct: 243 DIPGLAPPVQNRRLL 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823307|ref|XP_002879536.1| NPSN11 [Arabidopsis lyrata subsp. lyrata] gi|297325375|gb|EFH55795.1| NPSN11 [Arabidopsis lyrata subsp. lyrata]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/258 (78%), Positives = 234/258 (90%), Gaps = 1/258 (0%)

Query: 3   LSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFD 62
           +S++S++LAEI GQI DIFRALSNGFQKLEKIKD NRQSRQLEELTDKMR+CK LIK+FD
Sbjct: 4   ISAVSEELAEIEGQINDIFRALSNGFQKLEKIKDANRQSRQLEELTDKMRDCKSLIKDFD 63

Query: 63  REVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLE-NNKRVDLFDGPNEGF 121
           RE+K +E  ND  TN+ML++++QSMVKELNSYVALKK++ +NL  NNKRVDLFDGP E  
Sbjct: 64  REIKSLESGNDANTNRMLNDRRQSMVKELNSYVALKKKYSSNLATNNKRVDLFDGPGEEH 123

Query: 122 AEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMS 181
            E+NVLLAS+M+NQ+LMD GN MMD+TDQAIER K++V ETINVGT+T+A LKAQTEQMS
Sbjct: 124 MEENVLLASNMSNQELMDKGNSMMDDTDQAIERGKKIVQETINVGTDTSAALKAQTEQMS 183

Query: 182 RIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDI 241
           R+VNELDSIHFS+KKAS+LVKEIGRQVATDKCIMA LFLIVIGVIAIIIVK+VNPNNKDI
Sbjct: 184 RVVNELDSIHFSLKKASKLVKEIGRQVATDKCIMAFLFLIVIGVIAIIIVKIVNPNNKDI 243

Query: 242 RDIPGLAPPAMARRLLSN 259
           R+IPGLAPPAM RRLL N
Sbjct: 244 RNIPGLAPPAMNRRLLWN 261

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403771|ref|NP_565800.1| Novel plant SNARE 11 [Arabidopsis thaliana] gi|332278197|sp|Q944A9.2|NPS11_ARATH RecName: Full=Novel plant SNARE 11; Short=AtNPSN11 gi|20197215|gb|AAC61818.2| expressed protein [Arabidopsis thaliana] gi|330253983|gb|AEC09077.1| Novel plant SNARE 11 [Arabidopsis thaliana]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/260 (78%), Positives = 234/260 (90%), Gaps = 3/260 (1%)

Query: 3   LSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFD 62
           +S++S++LAEI GQI DIFRALSNGFQKLEKIKD NRQSRQLEELTDKMR+CK LIK+FD
Sbjct: 4   ISAVSEELAEIEGQINDIFRALSNGFQKLEKIKDANRQSRQLEELTDKMRDCKSLIKDFD 63

Query: 63  REVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNL-ENNKRVDLFDGPNEGF 121
           RE+K +E  ND  TN+ML++++QSMVKELNSYVALKK++ +NL  NNKRVDLFDGP E  
Sbjct: 64  REIKSLESGNDASTNRMLNDRRQSMVKELNSYVALKKKYSSNLASNNKRVDLFDGPGEEH 123

Query: 122 AEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMS 181
            E+NVLLAS+M+NQ+LMD GN MMD+TDQAIER K++V ETINVGT+T+A LKAQTEQMS
Sbjct: 124 MEENVLLASNMSNQELMDKGNSMMDDTDQAIERGKKIVQETINVGTDTSAALKAQTEQMS 183

Query: 182 RIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPNNKDI 241
           R+VNELDSIHFS+KKAS+LVKEIGRQVATDKCIMA LFLIVIGVIAIIIVK+VNPNNKDI
Sbjct: 184 RVVNELDSIHFSLKKASKLVKEIGRQVATDKCIMAFLFLIVIGVIAIIIVKIVNPNNKDI 243

Query: 242 RDIP--GLAPPAMARRLLSN 259
           RDIP  GLAPPAM RRLL N
Sbjct: 244 RDIPGVGLAPPAMNRRLLWN 263

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:2063459	265	NPSN11 "AT2G35190" [Arabidopsi	0.992	0.977	0.741	1.7e-98
TAIR|locus:2093601	269	NPSN13 "AT3G17440" [Arabidopsi	0.961	0.933	0.671	6.2e-85
TAIR|locus:2007730	265	NPSN12 "AT1G48240" [Arabidopsi	0.961	0.947	0.652	1.2e-83
UNIPROTKB|E1BUX5	232	VTI1B "Uncharacterized protein	0.758	0.853	0.221	1.5e-11
DICTYBASE|DDB_G0285365	232	DDB_G0285365 [Dictyostelium di	0.850	0.956	0.209	2.4e-08
GENEDB_PFALCIPARUM|PF14_0464	253	PF14_0464 "hypothetical protei	0.731	0.754	0.253	2.8e-08
UNIPROTKB|Q8IKY7	253	PfVti1 "SNARE protein, putativ	0.731	0.754	0.253	2.8e-08
ZFIN|ZDB-GENE-040426-1148	225	vti1b "vesicle transport throu	0.747	0.866	0.198	1.2e-07
UNIPROTKB|F1N1Z0	232	VTI1B "Vesicle transport throu	0.747	0.840	0.245	3.6e-07
UNIPROTKB|Q2KIU0	232	VTI1B "Vesicle transport throu	0.747	0.840	0.245	3.6e-07

TAIR|locus:2063459 NPSN11 "AT2G35190" [Arabidopsis thaliana (taxid:3702)]

 Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
 Identities = 195/263 (74%), Positives = 225/263 (85%)

Query:     1 MD-LSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIK 59
             MD +S++S++LAEI GQI DIFRALSNGFQKLEKIKD NRQSRQLEELTDKMR+CK LIK
Sbjct:     1 MDPISAVSEELAEIEGQINDIFRALSNGFQKLEKIKDANRQSRQLEELTDKMRDCKSLIK 60

Query:    60 EFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNL-ENNKRVDLFDGPN 118
             +FDRE+K +E  ND  TN+ML++++QSMVKELNSYVALKK++ +NL  NNKRVDLFDGP 
Sbjct:    61 DFDREIKSLESGNDASTNRMLNDRRQSMVKELNSYVALKKKYSSNLASNNKRVDLFDGPG 120

Query:   119 EGFAEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTE 178
             E   E+NVLLAS+M+NQ+LMD GN MMD+TDQAIER K++V ETINVGT+T+A LKAQTE
Sbjct:   121 EEHMEENVLLASNMSNQELMDKGNSMMDDTDQAIERGKKIVQETINVGTDTSAALKAQTE 180

Query:   179 QMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLXXXXXXXXXXXKLVNPNN 238
             QMSR+VNELDSIHFS+KKAS+LVKEIGRQVATDKCIMA LFL           K+VNPNN
Sbjct:   181 QMSRVVNELDSIHFSLKKASKLVKEIGRQVATDKCIMAFLFLIVIGVIAIIIVKIVNPNN 240

Query:   239 KDIRDIPG--LAPPAMARRLLSN 259
             KDIRDIPG  LAPPAM RRLL N
Sbjct:   241 KDIRDIPGVGLAPPAMNRRLLWN 263

GO:0008565 "protein transporter activity" evidence=ISS

GO:0000910 "cytokinesis" evidence=TAS

GO:0005484 "SNAP receptor activity" evidence=ISS

GO:0009504 "cell plate" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2093601 NPSN13 "AT3G17440" [Arabidopsis thaliana (taxid:3702)]

 Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
 Identities = 172/256 (67%), Positives = 208/256 (81%)

Query:     6 ISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREV 65
             +S  L +I+G+I D FRAL+NGFQ+L+KIKD  RQS+QLEELTDKMRECKRL+KEFDRE+
Sbjct:     7 MSPQLEQIHGEIRDHFRALANGFQRLDKIKDSTRQSKQLEELTDKMRECKRLVKEFDREL 66

Query:    66 KDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFD---GPN-EGF 121
             KD E RN PE NK L+++KQSM+KELNSYVAL+K + + L  NK+V+LFD   G + E  
Sbjct:    67 KDEEARNSPEVNKQLNDEKQSMIKELNSYVALRKTYMSTL-GNKKVELFDMGAGVSGEPT 125

Query:   122 AEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMS 181
             AE+NV +ASSM+NQ+L+D+G + MDETDQAIERSKQVV +T+ VGT+TAA LK QT+QM 
Sbjct:   126 AEENVQVASSMSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQTDQMG 185

Query:   182 RIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLXXXXXXXXXXXKLVNPNNKDI 241
             R+VN LD+I FSIKKASQLVKEIGRQVATDKCIM  LFL           K+VNPNNKDI
Sbjct:   186 RVVNHLDTIQFSIKKASQLVKEIGRQVATDKCIMGFLFLIVCGVVAIIIVKIVNPNNKDI 245

Query:   242 RDIPGLAPPAMARRLL 257
             RDIPGLAPPA +R+LL
Sbjct:   246 RDIPGLAPPAQSRKLL 261

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2007730 NPSN12 "AT1G48240" [Arabidopsis thaliana (taxid:3702)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 167/256 (65%), Positives = 210/256 (82%)

Query:     6 ISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREV 65
             +S  L +I+G+I D FRAL+NGFQ+L+KIKD +RQS+QLEEL +KMR+CKRL+KEFDRE+
Sbjct:     7 MSPHLEQIHGEIRDHFRALANGFQRLDKIKDSSRQSKQLEELAEKMRDCKRLVKEFDREL 66

Query:    66 KDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFD---GPN-EGF 121
             KD E RN P+ NK L+++KQSM+KELNSYVAL+K +   L  NK+V+LFD   G + E  
Sbjct:    67 KDGEARNSPQVNKQLNDEKQSMIKELNSYVALRKTYLNTL-GNKKVELFDTGAGVSGEPT 125

Query:   122 AEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMS 181
             AE+NV +AS+M+NQ+L+D+G + MDETDQAIERSKQVVH+T+ VGT+TA+ LK QT+QM 
Sbjct:   126 AEENVQMASTMSNQELVDAGMKRMDETDQAIERSKQVVHQTLEVGTQTASNLKGQTDQMG 185

Query:   182 RIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLXXXXXXXXXXXKLVNPNNKDI 241
             R+VN+LD+I FS+KKASQLVKEIGRQVATDKCIMA LFL           K+VNPNNKDI
Sbjct:   186 RVVNDLDTIQFSLKKASQLVKEIGRQVATDKCIMAFLFLIVCGVIAIIIVKIVNPNNKDI 245

Query:   242 RDIPGLAPPAMARRLL 257
             RDIPGLAPPA +R+LL
Sbjct:   246 RDIPGLAPPAQSRKLL 261

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

UNIPROTKB|E1BUX5 VTI1B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 165 (63.1 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 46/208 (22%), Positives = 105/208 (50%)

Query:    16 QITDIFRALSNGFQKL-EKIKD--VNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRN 72
             ++ +IFR L    + + E+++      + + + E  +K RE    ++E + E+K      
Sbjct:    14 RLHEIFRGLHGELRGVPERLRGGAAEEKKKLIREFDEKQREANETLREMEEELKYAPL-- 71

Query:    73 DPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDGPNEGFAEDNVLLASSM 132
              P  N+M+S K ++  ++L+ +    K     L    + D+  G    F+ +N    +  
Sbjct:    72 -PFRNQMMS-KIRAYRRDLSMFQREMKNTDLGLGPGSQGDMKYGI---FSTENEQSTNLQ 126

Query:   133 TNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHF 192
             + + L+  G   ++   Q+IERS ++  ET  +GT+    L  Q EQ+ R  + L +   
Sbjct:   127 SQRVLLLQGTESLNRASQSIERSHRIAAETDQIGTDIIEELGEQREQLERTKSRLVNTSE 186

Query:   193 SIKKASQLVKEIGRQVATDKCIMAMLFL 220
             ++ K+ ++++ + R++AT+K +++++ +
Sbjct:   187 NLSKSRKILRSMSRRIATNKLLLSIIII 214

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

DICTYBASE|DDB_G0285365 DDB_G0285365 [Dictyostelium discoideum (taxid:44689)]

 Score = 144 (55.7 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 49/234 (20%), Positives = 100/234 (42%)

Query:     9 DLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDI 68
             DL E       I R +  G + L K K         E L +++   K++++ +  + +++
Sbjct:     3 DLQENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFREL 62

Query:    69 EGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDGPNEGFAEDNVLL 128
               +N+ +  +  + + +  +K L + +   ++   N EN        G   G +  N   
Sbjct:    63 -AKNEQKPYQDKANQYEEQIKTLENDLNWAEK---NSEN--------GGGGGGSGGNNSQ 110

Query:   129 ASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELD 188
             +     Q+ M    ++  +      R    V +   VGT T   +  Q EQM RI  +++
Sbjct:   111 SIDTEYQETMQKAKKIQQQDIDTTHRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDME 170

Query:   189 SIHFSIKKASQLVKEIGRQVATDKCIMAMLFLXXXXXXXXXXXKLVNPNNKDIR 242
              I  ++K A++ ++   R++ATDK IM ++ L            +V P +K ++
Sbjct:   171 EIDGNLKLATRQMRAFARKMATDKLIMGLVLLIVAAIIFVIVYSIVKPKSKTVQ 224

GO:0044351 "macropinocytosis" evidence=RCA

GENEDB_PFALCIPARUM|PF14_0464 PF14_0464 "hypothetical protein" [Plasmodium falciparum (taxid:5833)]

 Score = 145 (56.1 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 54/213 (25%), Positives = 101/213 (47%)

Query:    12 EINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKD---I 68
             EIN  + D  R L    Q+LEK ++V        E T+K       I E  +  KD   I
Sbjct:    10 EINNLLEDFKRIL----QELEK-EEVKN------EKTEKYCNDIHFINERIKTAKDAYFI 58

Query:    69 EGRNDPETNKMLSEKKQSMVKELNSYVALKKQH-QTNLENNKRVDLFDGPNEGFAEDNVL 127
             E RN  E      E+ +++ K  N  + L+  + Q + + +K +  ++   +      +L
Sbjct:    59 EIRNLSE-----EEQIENISKIKNKMIILENLNIQFDFKKSKLI--YEEDKQAKENKKLL 111

Query:   128 LASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNEL 187
                 ++ + +   G+ + D+TD AI R K +V E+ N+  + A  L  Q E++ +  +++
Sbjct:   112 KVRYVSAKDIETKGDIIQDQTDDAIFRMKMMVDESENITKDAADKLNIQNEKLQKARDKI 171

Query:   188 DSIHFSIKKASQLVKEIGRQVATDKCIMAMLFL 220
             + +  ++  A Q +KEI ++  TD+ +  M  L
Sbjct:   172 EDVDINVYSAKQTLKEIAKEAVTDRFVRLMSIL 204

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IKY7 PfVti1 "SNARE protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 145 (56.1 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 54/213 (25%), Positives = 101/213 (47%)

Query:    12 EINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKD---I 68
             EIN  + D  R L    Q+LEK ++V        E T+K       I E  +  KD   I
Sbjct:    10 EINNLLEDFKRIL----QELEK-EEVKN------EKTEKYCNDIHFINERIKTAKDAYFI 58

Query:    69 EGRNDPETNKMLSEKKQSMVKELNSYVALKKQH-QTNLENNKRVDLFDGPNEGFAEDNVL 127
             E RN  E      E+ +++ K  N  + L+  + Q + + +K +  ++   +      +L
Sbjct:    59 EIRNLSE-----EEQIENISKIKNKMIILENLNIQFDFKKSKLI--YEEDKQAKENKKLL 111

Query:   128 LASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNEL 187
                 ++ + +   G+ + D+TD AI R K +V E+ N+  + A  L  Q E++ +  +++
Sbjct:   112 KVRYVSAKDIETKGDIIQDQTDDAIFRMKMMVDESENITKDAADKLNIQNEKLQKARDKI 171

Query:   188 DSIHFSIKKASQLVKEIGRQVATDKCIMAMLFL 220
             + +  ++  A Q +KEI ++  TD+ +  M  L
Sbjct:   172 EDVDINVYSAKQTLKEIAKEAVTDRFVRLMSIL 204

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-1148 vti1b "vesicle transport through interaction with t-SNAREs homolog 1B (yeast)" [Danio rerio (taxid:7955)]

 Score = 138 (53.6 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 41/207 (19%), Positives = 99/207 (47%)

Query:    25 SNGFQKL-EKIKDVNRQSRQLEELTDKMR--ECKRLIKEFDREVKDIEGRNDPETNKMLS 81
             S  F+KL E  K +  + + + E   K +  E KR++++FD  V + E        ++  
Sbjct:     3 SEEFEKLHEMYKSLYDEVKLMPERVQKSQGEERKRIVRDFDERVSEAEEVLQGMEQELFG 62

Query:    82 EKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDGPNEGFAEDNVLLASSMTNQQ----- 136
                 S    +++ + L ++    L+ + R+    G      +  + + +S  +Q      
Sbjct:    63 APS-SFRTPMSTKIRLYRRDLAKLQRDIRLSATPGLTGQLGDSRLGVYASQNDQSTHLQS 121

Query:   137 ---LMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFS 193
                L+  G   ++   ++IERS+++  ET  +GT+    L  Q EQ+ R  + L +   +
Sbjct:   122 QRALLIQGTESLNNASKSIERSQRIAAETDQIGTDIIEELGEQREQLDRTRDRLVNTGEN 181

Query:   194 IKKASQLVKEIGRQVATDKCIMAMLFL 220
             + ++ ++++ + R++ T+K +++++ +
Sbjct:   182 LSRSRKILRAMSRRIVTNKLLLSIIII 208

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|F1N1Z0 VTI1B "Vesicle transport through interaction with t-SNAREs homolog 1B" [Bos taurus (taxid:9913)]

 Score = 135 (52.6 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 52/212 (24%), Positives = 102/212 (48%)

Query:    23 ALSNGFQKLEKI-KDVNRQSRQLEELTDKM---RECKRLIKEFD---REVKDIEGRNDPE 75
             A S  F+KL +I + ++   R + E    M    E K+LI++FD   +E  +     + E
Sbjct:     6 ASSEHFEKLHEIFRGLHEDLRGVPERLLGMAGTEEKKKLIRDFDEKQQEANETLAEMEEE 65

Query:    76 TNKMLSEKKQSMVKELNSYVA-LKKQHQ----TNLENNK--RVDLFDGPNEGFAEDNVLL 128
                     +  M+ +L +Y   L K H+    T L      R D+  G    +A +N  +
Sbjct:    66 LRYAPLSFRNPMMSKLRTYRKDLAKLHREVRSTPLTATPGARGDMKYGT---YAVENEHM 122

Query:   129 ASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELD 188
                 + + L+  G   ++   Q+IERS ++  ET  +G+E    L  Q +Q+ R  + L 
Sbjct:   123 NRLQSQRALLLQGTDSLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKSRLV 182

Query:   189 SIHFSIKKASQLVKEIGRQVATDKCIMAMLFL 220
             +   ++ K+ ++++ + R+V T+K +++++ L
Sbjct:   183 NTSENLSKSRKILRSMSRKVTTNKLLLSIVIL 214

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|Q2KIU0 VTI1B "Vesicle transport through interaction with t-SNAREs homolog 1B" [Bos taurus (taxid:9913)]

 Score = 135 (52.6 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 52/212 (24%), Positives = 102/212 (48%)

Query:    23 ALSNGFQKLEKI-KDVNRQSRQLEELTDKM---RECKRLIKEFD---REVKDIEGRNDPE 75
             A S  F+KL +I + ++   R + E    M    E K+LI++FD   +E  +     + E
Sbjct:     6 ASSEHFEKLHEIFRGLHEDLRGVPERLLGMAGTEEKKKLIRDFDEKQQEANETLAEMEEE 65

Query:    76 TNKMLSEKKQSMVKELNSYVA-LKKQHQ----TNLENNK--RVDLFDGPNEGFAEDNVLL 128
                     +  M+ +L +Y   L K H+    T L      R D+  G    +A +N  +
Sbjct:    66 LRYAPLSFRNPMMSKLRTYRKDLAKLHREVRSTPLTATPGARGDMKYGT---YAVENEHM 122

Query:   129 ASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELD 188
                 + + L+  G   ++   Q+IERS ++  ET  +G+E    L  Q +Q+ R  + L 
Sbjct:   123 NRLQSQRALLLQGTDSLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKSRLV 182

Query:   189 SIHFSIKKASQLVKEIGRQVATDKCIMAMLFL 220
             +   ++ K+ ++++ + R+V T+K +++++ L
Sbjct:   183 NTSENLSKSRKILRSMSRKVTTNKLLLSIVIL 214

GO:0012505 "endomembrane system" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q944A9	NPS11_ARATH	No assigned EC number	0.7846	0.9846	0.9698	yes	no
Q9LRP1	NPS13_ARATH	No assigned EC number	0.7031	0.9616	0.9330	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.118.213.1 hypothetical protein (259 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	261
smart00397	66	smart00397, t_SNARE, Helical region found in SNARE	2e-05

>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLV 201
               +E D+ +E+ ++ + E   +  +    L+ Q EQ+ RI + +D    ++KKA++ +
Sbjct: 4   LAREEERDEELEQLEKSIQELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRL 63

Query: 202 KEI 204
           K+ 
Sbjct: 64  KKA 66

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs". Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	100.0
KOG3251	213	consensus Golgi SNAP receptor complex member [Intr	99.83
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	99.49
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	99.37
KOG3208	231	consensus SNARE protein GS28 [Intracellular traffi	99.24
PF05008	79	V-SNARE: Vesicle transport v-SNARE protein N-termi	99.23
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	99.03
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	98.92
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	98.85
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	98.81
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	98.48
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	98.05
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	98.03
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	97.96
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	97.7
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	97.61
KOG3385	118	consensus V-SNARE [Intracellular trafficking, secr	97.53
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	97.43
KOG3065	273	consensus SNAP-25 (synaptosome-associated protein)	97.36
KOG3894	316	consensus SNARE protein Syntaxin 18/UFE1 [Intracel	97.04
cd00193	60	t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu	96.85
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	96.71
PRK10884	206	SH3 domain-containing protein; Provisional	96.08
PF04210	70	MtrG: Tetrahydromethanopterin S-methyltransferase,	94.64
TIGR01149	70	mtrG N5-methyltetrahydromethanopterin:coenzyme M m	94.15
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	93.66
PRK01026	77	tetrahydromethanopterin S-methyltransferase subuni	93.65
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	93.55
KOG3065	273	consensus SNAP-25 (synaptosome-associated protein)	93.51
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	93.02
COG4064	75	MtrG Tetrahydromethanopterin S-methyltransferase,	92.87
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	90.98
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	90.01
PF12911	56	OppC_N: N-terminal TM domain of oligopeptide trans	89.92
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	89.56
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	88.66
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	88.3
KOG2678	244	consensus Predicted membrane protein [Function unk	88.23
PF07423	217	DUF1510: Protein of unknown function (DUF1510); In	86.63
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	86.54
KOG0862	216	consensus Synaptobrevin/VAMP-like protein SEC22 [I	86.33
PHA03049	68	IMV membrane protein; Provisional	85.58
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	84.41
PRK11637	428	AmiB activator; Provisional	83.51
PF02468	43	PsbN: Photosystem II reaction centre N protein (ps	82.6
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	80.78

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.3e-43  Score=290.17  Aligned_cols=218  Identities=16%  Similarity=0.297  Sum_probs=194.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHH
Q 042996            6 ISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQ   85 (261)
Q Consensus         6 ~s~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~   85 (261)
                      ||+.|++||++|..+..+|++.++++.+.+ +++|+..+.+|+..++||+++|.|||+||+.+    ||+.|..|..|++
T Consensus         1 ms~~fe~yEqqy~~l~a~it~k~~~~~~~~-~~ekk~~l~~i~~~leEa~ell~qMdlEvr~l----p~~~Rs~~~~KlR   75 (220)
T KOG1666|consen    1 MSSLFEGYEQQYRELSAEITKKIGRALSLP-GSEKKQLLSEIDSKLEEANELLDQMDLEVREL----PPNFRSSYLSKLR   75 (220)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhHHHHhcCC-chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC----CchhhhHHHHHHH
Confidence            689999999999999999999999999875 88999999999999999999999999999876    5667889999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhh-hhhhhhhcCCCCCCCCcchhhhhchhhHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHH
Q 042996           86 SMVKELNSYVALKKQHQTNLE-NNKRVDLFDGPNEGFAEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETIN  164 (261)
Q Consensus        86 ~~~~~l~~~~~~~k~~~~~~~-~~~R~~L~~~~~~~~~~~n~~~~~~~~~~~ll~~~~~~l~~~~~~L~~s~~~~~ete~  164 (261)
                      .|++++++++.+++...+... ..+|+++++...  +++.   ..+.+||++|++ +++++.+++++|.+++|++.|||+
T Consensus        76 ~yksdl~~l~~e~k~~~~~~~~~~~rde~~~~~~--add~---~~~~dQR~rLl~-nTerLeRst~rl~ds~Ria~ETEq  149 (220)
T KOG1666|consen   76 EYKSDLKKLKRELKRTTSRNLNAGDRDELLEALE--ADDQ---NISADQRARLLQ-NTERLERSTDRLKDSQRIALETEQ  149 (220)
T ss_pred             HHHHHHHHHHHHHHHhhccccccchHHHHHhhhh--cccc---ccchhHHHHHHh-hhHHHHHhHHHHHHHHHHHHHHHH
Confidence            999999999999887763321 257888886642  2222   245679999998 999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHhhc
Q 042996          165 VGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFL-IVIGVIAIIIVKLV  234 (261)
Q Consensus       165 ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iil-l~i~Ii~vi~~k~~  234 (261)
                      ||.+|+++|+.||++|++++..+.+++++|++|+++|+.|.||+..|||++++||+ ++++|++++|+||+
T Consensus       150 IG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~kf~  220 (220)
T KOG1666|consen  150 IGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSKFT  220 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999887 66777788888885

>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=2e-18  Score=145.20  Aligned_cols=206  Identities=15%  Similarity=0.191  Sum_probs=156.1

Q ss_pred             HHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHH---HHHHHHHHH
Q 042996           13 INGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKML---SEKKQSMVK   89 (261)
Q Consensus        13 ~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~---~~~~~~~~~   89 (261)
                      +-...+.++.+++.+++++++.....+-...+..+...|.++...+..|+.-+...|++.+++.|.++   ..++..++.
T Consensus         4 ly~~t~~~~~k~q~~l~rlE~~~~~~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp~~rq~~rlr~dQl~~d~~~l~~   83 (213)
T KOG3251|consen    4 LYQSTNRQLDKLQRGLIRLERTIKTQEVSAVENSIQRSIDQYASRCQRLDVLVSKEPPKSRQAARLRVDQLLEDVEHLQT   83 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccccccchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            34556677778899999999854334678999999999999999999999999999888777766443   355555555


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhcCCCCCCCCcchhhhhchhhHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 042996           90 ELNSYVALKKQHQTNLENNKRVDLFDGPNEGFAEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTET  169 (261)
Q Consensus        90 ~l~~~~~~~k~~~~~~~~~~R~~L~~~~~~~~~~~n~~~~~~~~~~~ll~~~~~~l~~~~~~L~~s~~~~~ete~ig~~i  169 (261)
                      .+..+......-...+  .+|.+|+++.   |+. +....+.         ..+-.-+.+++|.++++.+++.-..|.+|
T Consensus        84 ~l~~~~~R~~~r~~~~--~er~~lL~~~---~~~-~~~~~~~---------~~D~el~~~d~l~~s~~~lDd~l~~G~~i  148 (213)
T KOG3251|consen   84 SLRTSMNRNNRREQQA--RERVELLDRR---FTN-GATGTSI---------PFDEELQENDSLKRSHNMLDDLLESGSAI  148 (213)
T ss_pred             HHHHHHHHhHHHHHHH--HHHHHHhcCC---CCC-CCccCCC---------cchHHHHhhhHHHHHHhhHHHHHHHHHHH
Confidence            5555553322222211  3589999775   222 1111110         12234567889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 042996          170 AAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLV  234 (261)
Q Consensus       170 l~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iill~i~Ii~vi~~k~~  234 (261)
                      +++|..|+-.|.++++++.++.++||.|+.+|+.|.||...||+|||++++ ++.|++|++|+|.
T Consensus       149 le~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i-~~~v~~yl~~~wl  212 (213)
T KOG3251|consen  149 LENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVI-LTLVIMYLFYRWL  212 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999886 4444455555565

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=99.49  E-value=9.4e-13  Score=98.82  Aligned_cols=88  Identities=19%  Similarity=0.359  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 042996          146 DETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGV  225 (261)
Q Consensus       146 ~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iill~i~I  225 (261)
                      .+.+.+|.++.+++.+..+.|..+++.|.+|+++|.+++++++++.+.++.|+++++.+.|+..+||+++|+.+++|+++
T Consensus         4 ~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~   83 (92)
T PF03908_consen    4 SDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLV   83 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 042996          226 IAIIIVKL  233 (261)
Q Consensus       226 i~vi~~k~  233 (261)
                      |+||+||.
T Consensus        84 v~yI~~rR   91 (92)
T PF03908_consen   84 VLYILWRR   91 (92)
T ss_pred             HHHHhhhc
Confidence            99998874

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=99.37  E-value=5.3e-12  Score=88.84  Aligned_cols=65  Identities=29%  Similarity=0.487  Sum_probs=62.3

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042996          144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQV  208 (261)
Q Consensus       144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~  208 (261)
                      .+.+++++|.++.++++|++++|.+|+.+|..||++|.++++++++++++++.|+++|+.|.||.
T Consensus         2 ~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~   66 (66)
T PF12352_consen    2 RLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK   66 (66)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence            57789999999999999999999999999999999999999999999999999999999999984

>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=4.1e-09  Score=89.13  Aligned_cols=209  Identities=15%  Similarity=0.178  Sum_probs=139.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhchhhhcch-----------h-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042996            7 SDDLAEINGQITDIFRALSNGFQKLEKIKDV-----------N-----RQSRQLEELTDKMRECKRLIKEFDREVKDIEG   70 (261)
Q Consensus         7 s~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~-----------~-----~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~   70 (261)
                      ++-++.+..+...+=.++...+..+.++...           -     .=+..-.+|+.-|++...+..+|..-+   ..
T Consensus         4 ~s~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~~~---~s   80 (231)
T KOG3208|consen    4 SSSWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMNDCA---SS   80 (231)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHhhc---cC
Confidence            3445666666666666666666665554322           0     113555677777788888877777621   11


Q ss_pred             CCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhhcCCCCCCCCcchhhhhchhhHHHHHHhhhhhhHHHH
Q 042996           71 RNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLEN-NKRVDLFDGPNEGFAEDNVLLASSMTNQQLMDSGNRMMDETD  149 (261)
Q Consensus        71 s~~~~~r~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~-~~R~~L~~~~~~~~~~~n~~~~~~~~~~~ll~~~~~~l~~~~  149 (261)
                      ..+.   ..+...++.|+.-|..|.+++......+.. .+|+.|++.... ....+ .......+.       +..-+-.
T Consensus        81 ~a~~---aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~-~~~~~-~~~~~~~~~-------e~~lkE~  148 (231)
T KOG3208|consen   81 PANS---AAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERESLLESVRA-DISSY-PSASGFNRG-------EMYLKEH  148 (231)
T ss_pred             CCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccC-CccCCCchH-------HHHHHHh
Confidence            1122   235566667776677777666555554432 568888765310 00000 011112222       3445678


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 042996          150 QAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAII  229 (261)
Q Consensus       150 ~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iill~i~Ii~vi  229 (261)
                      +.|+++.+.++|+..++.+|-++|+.||..+.+++.++.++...+=.-+.+|..+.+|-..|-+|+..||. +|.|++++
T Consensus       149 ~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis-~C~llllf  227 (231)
T KOG3208|consen  149 DHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVIS-VCTLLLLF  227 (231)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999888775 33333333


Q ss_pred             HH
Q 042996          230 IV  231 (261)
Q Consensus       230 ~~  231 (261)
                      ||
T Consensus       228 y~  229 (231)
T KOG3208|consen  228 YW  229 (231)
T ss_pred             HH
Confidence            33

>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles

Probab=99.23  E-value=2e-10  Score=83.54  Aligned_cols=78  Identities=15%  Similarity=0.326  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHH
Q 042996           17 ITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVA   96 (261)
Q Consensus        17 ~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~   96 (261)
                      |..++.+|.+.+..+.... +++|+..+++++..|++|+++|+|||+|++.+    |++.|..|..+++.|+++++++++
T Consensus         1 f~~l~~~i~~~l~~~~~~~-~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~----p~s~r~~~~~kl~~yr~~l~~lk~   75 (79)
T PF05008_consen    1 FQALTAEIKSKLERIKNLS-GEQRKSLIREIERDLDEAEELLKQMELEVRSL----PPSERNQYKSKLRSYRSELKKLKK   75 (79)
T ss_dssp             HHHHHHHHHHHHHHGGGS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888888888888754 58999999999999999999999999998754    678999999999999999999887


Q ss_pred             HHH
Q 042996           97 LKK   99 (261)
Q Consensus        97 ~~k   99 (261)
                      .++
T Consensus        76 ~l~   78 (79)
T PF05008_consen   76 ELK   78 (79)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            765

The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=3.8e-07  Score=79.25  Aligned_cols=103  Identities=16%  Similarity=0.234  Sum_probs=79.9

Q ss_pred             hhhhhcCCCCCCCCcchhhhhchhh-HHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          109 KRVDLFDGPNEGFAEDNVLLASSMT-NQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNEL  187 (261)
Q Consensus       109 ~R~~L~~~~~~~~~~~n~~~~~~~~-~~~ll~~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l  187 (261)
                      .|+.|++...++--+.+.......+ -+...+.....+++++..|+....++..+.++|..+.++|..|...|+.....+
T Consensus       110 ~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~  189 (235)
T KOG3202|consen  110 IRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEM  189 (235)
T ss_pred             chhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3888886643221012212223333 244445567788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhh
Q 042996          188 DSIHFSIKKASQLVKEIGRQVATDK  212 (261)
Q Consensus       188 ~~i~~~L~~s~~~l~~m~rr~~~dK  212 (261)
                      +.+++-|.+..+.+..|.+ +..++
T Consensus       190 d~t~srl~~~~~~l~~v~~-~~s~~  213 (235)
T KOG3202|consen  190 DRTESRLDRVMKRLAKVNR-MASQC  213 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHH-Hhccc
Confidence            9999999999999999999 44443

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=1.6e-06  Score=76.31  Aligned_cols=85  Identities=18%  Similarity=0.317  Sum_probs=74.8

Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 042996          136 QLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIM  215 (261)
Q Consensus       136 ~ll~~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~  215 (261)
                      .+++.+.+-..+-...+.+++..+.|..+|..++..-...|.|.+.||++.+++++-+++-|...|.++--|+-.|||++
T Consensus       213 ~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLm  292 (311)
T KOG0812|consen  213 ALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLM  292 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHH
Confidence            34454445556667788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 042996          216 AMLFL  220 (261)
Q Consensus       216 ~~iil  220 (261)
                      +=|+.
T Consensus       293 vkiF~  297 (311)
T KOG0812|consen  293 VKIFG  297 (311)
T ss_pred             HHHHH
Confidence            76654

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=98.85  E-value=2.6e-06  Score=72.95  Aligned_cols=90  Identities=16%  Similarity=0.240  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHHH
Q 042996          146 DETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKE---IGRQVATDKCIMAMLFLIV  222 (261)
Q Consensus       146 ~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~---m~rr~~~dK~i~~~iill~  222 (261)
                      ..-...|.+.+++++|..++.+.+-+....|.+.++.+.+.+.+...+++.+...+.+   .+|.+..+||++|+|++++
T Consensus       181 q~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~ii  260 (280)
T COG5074         181 QARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFII  260 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHH
Confidence            3455678899999999999999999999999999999999999999999988755432   3788999999999998877


Q ss_pred             HHHHHHHHHhhcc
Q 042996          223 IGVIAIIIVKLVN  235 (261)
Q Consensus       223 i~Ii~vi~~k~~~  235 (261)
                      |++|+++++|.+.
T Consensus       261 i~viv~vv~~v~~  273 (280)
T COG5074         261 IIVIVVVVFKVVP  273 (280)
T ss_pred             HHHHHHHHhcccc
Confidence            7777777776653

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=5.5e-06  Score=74.62  Aligned_cols=88  Identities=19%  Similarity=0.346  Sum_probs=75.0

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHH
Q 042996          144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVK---EIGRQVATDKCIMAMLFL  220 (261)
Q Consensus       144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~---~m~rr~~~dK~i~~~iil  220 (261)
                      -...-.+.+.+.++.+.|..++..++..-...|.|+|++|..++....+.+..|...++   ...+++.++|||++++++
T Consensus       200 Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~i  279 (297)
T KOG0810|consen  200 EIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILI  279 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHH
Confidence            44556678999999999999999999999999999999999999999999999999888   789999999988887776


Q ss_pred             HHHHHHHHHHH
Q 042996          221 IVIGVIAIIIV  231 (261)
Q Consensus       221 l~i~Ii~vi~~  231 (261)
                      ++++|+++++.
T Consensus       280 ii~~v~v~~i~  290 (297)
T KOG0810|consen  280 IIIVVLVVVIV  290 (297)
T ss_pred             HHHHHHhhhhc
Confidence            55555444333

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=0.00024  Score=63.13  Aligned_cols=90  Identities=18%  Similarity=0.313  Sum_probs=69.2

Q ss_pred             hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHH
Q 042996          142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKE---IGRQVATDKCIMAML  218 (261)
Q Consensus       142 ~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~---m~rr~~~dK~i~~~i  218 (261)
                      .+..++-.+.+.+.++-+.|.++|..+...-.+.|.++++.|..++..+..++..|+.-|+.   ..+....-+|++.+|
T Consensus       172 ~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v  251 (269)
T KOG0811|consen  172 LDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLV  251 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHH
Confidence            34556678899999999999999999999999999999999999999999999999998866   333344444554444


Q ss_pred             HHHHHHHHHHHHH
Q 042996          219 FLIVIGVIAIIIV  231 (261)
Q Consensus       219 ill~i~Ii~vi~~  231 (261)
                      ++++++||+.+++
T Consensus       252 ~~~v~lii~l~i~  264 (269)
T KOG0811|consen  252 GGPVGLIIGLIIA  264 (269)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444443

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=98.05  E-value=0.0022  Score=56.54  Aligned_cols=90  Identities=19%  Similarity=0.291  Sum_probs=72.3

Q ss_pred             hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHH
Q 042996          142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVK-EIGRQVATDKCIMAMLFL  220 (261)
Q Consensus       142 ~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~-~m~rr~~~dK~i~~~iil  220 (261)
                      +....+-.+.+.+..+.+.|..+|..+...-..+|.+.+++++-.+..+..++.-|++-|. .+..+-.+.||-+|+.++
T Consensus       187 q~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Lli  266 (283)
T COG5325         187 QILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLI  266 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHH
Confidence            3346677889999999999999999999999999999999999999999999999998774 466667788887777554


Q ss_pred             -HHHHHHHHHHH
Q 042996          221 -IVIGVIAIIIV  231 (261)
Q Consensus       221 -l~i~Ii~vi~~  231 (261)
                       ++++.++++..
T Consensus       267 l~vv~lfv~l~~  278 (283)
T COG5325         267 LLVVLLFVSLIK  278 (283)
T ss_pred             HHHHHHHHHHHH
Confidence             33333333333

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=98.03  E-value=0.0041  Score=54.90  Aligned_cols=97  Identities=12%  Similarity=0.290  Sum_probs=64.2

Q ss_pred             hHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 042996          133 TNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDK  212 (261)
Q Consensus       133 ~~~~ll~~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK  212 (261)
                      .-+.++.++...+++-++.+-.   ++....+-....-..|......|.++...++.--+.++.+..-|+.+.+....  
T Consensus       153 ~~e~~l~~~~~~QE~L~~em~~---La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~--  227 (251)
T PF09753_consen  153 SLEKILQHHRNLQEDLTEEMLS---LARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG--  227 (251)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence            3344444444455554444444   44455555666667779999999999999999999999999999998766544  


Q ss_pred             HHHHHHHH--HHHHHHHHHHHhhc
Q 042996          213 CIMAMLFL--IVIGVIAIIIVKLV  234 (261)
Q Consensus       213 ~i~~~iil--l~i~Ii~vi~~k~~  234 (261)
                      |++|++++  +++.|+.|+|.|+|
T Consensus       228 ~~~~~~i~~v~~~Fi~mvl~iri~  251 (251)
T PF09753_consen  228 CWTWLMIFVVIIVFIMMVLFIRIF  251 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHheeC
Confidence            66666443  33334455555554

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.96  E-value=0.0035  Score=55.82  Aligned_cols=74  Identities=11%  Similarity=0.212  Sum_probs=63.9

Q ss_pred             HhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 042996          139 DSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDK  212 (261)
Q Consensus       139 ~~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK  212 (261)
                      ..+.+...+-...+....+.+.|..+|..+...-..+|.-.+++++-+++.+.-.++.|.+.|.+..+--..+|
T Consensus       207 e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~  280 (305)
T KOG0809|consen  207 ENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNK  280 (305)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCC
Confidence            43566667777888889999999999999999999999999999999999999999999999988766555554

>smart00397 t_SNARE Helical region found in SNAREs

Probab=97.70  E-value=0.00043  Score=47.53  Aligned_cols=62  Identities=26%  Similarity=0.423  Sum_probs=57.5

Q ss_pred             hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKE  203 (261)
Q Consensus       142 ~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~  203 (261)
                      ...+.+....|.+....+.++.++|..+...+..|.+.|.++...++.+...+..+.+-++.
T Consensus         4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~   65 (66)
T smart00397        4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence            34677899999999999999999999999999999999999999999999999999987754

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=97.61  E-value=0.0037  Score=46.20  Aligned_cols=82  Identities=21%  Similarity=0.312  Sum_probs=62.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHH
Q 042996          150 QAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFL-IVIGVIAI  228 (261)
Q Consensus       150 ~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iil-l~i~Ii~v  228 (261)
                      +.+...+..++++..+-.+-++.+-+..+.|+...++..+....-..=.+.-+.+.|++.-.++-++++++ ++++++++
T Consensus         3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~   82 (89)
T PF00957_consen    3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILI   82 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhH
Confidence            46777888888888888888999999999999999998888888877777777788887776666666655 33333344


Q ss_pred             HHH
Q 042996          229 IIV  231 (261)
Q Consensus       229 i~~  231 (261)
                      +++
T Consensus        83 i~~   85 (89)
T PF00957_consen   83 III   85 (89)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.53  E-value=0.00076  Score=51.88  Aligned_cols=76  Identities=14%  Similarity=0.190  Sum_probs=61.8

Q ss_pred             hh-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 042996          144 MM-DETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFL  220 (261)
Q Consensus       144 ~l-~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iil  220 (261)
                      .+ .+..+.+.....-+.-.+.+.-+|..+...|...|+.+.+.++.+.+-|+.+-.-++.|+|+ -.-++.+|.++.
T Consensus        29 ~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-sg~~l~~~m~~f  105 (118)
T KOG3385|consen   29 SLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-SGISLLCWMAVF  105 (118)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-CCcchHHHHHHH
Confidence            44 44556666667777888889999999999999999999999999999999999999999999 444455555443

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=97.43  E-value=0.0033  Score=43.13  Aligned_cols=60  Identities=18%  Similarity=0.295  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          148 TDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQ  207 (261)
Q Consensus       148 ~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr  207 (261)
                      ..+.|......+.+..+++.++...+..|.+.|+++...++.+...+..+.+-|..+.+.
T Consensus         2 ~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~   61 (63)
T PF05739_consen    2 RDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            457788999999999999999999999999999999999999999999999999888765

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.36  E-value=0.0016  Score=58.04  Aligned_cols=72  Identities=24%  Similarity=0.327  Sum_probs=64.0

Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          134 NQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIG  205 (261)
Q Consensus       134 ~~~ll~~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~  205 (261)
                      .+.+-.........+..+-.++...+.+++..|..|+..|..|+|+|.+|...++.++.++.++.+.|..|.
T Consensus        63 ~~~l~~e~~~~~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~  134 (273)
T KOG3065|consen   63 VDELEQEIESTAQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELK  134 (273)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHH
Confidence            344444455567778899999999999999999999999999999999999999999999999999999886

>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.04  E-value=0.12  Score=46.64  Aligned_cols=87  Identities=9%  Similarity=0.131  Sum_probs=70.9

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHH
Q 042996          145 MDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDK-CIMAMLFLIVI  223 (261)
Q Consensus       145 l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK-~i~~~iill~i  223 (261)
                      ++...+....+++.+.|...+-.-..+.+-.|-..|+.+.+...++..+++.++..|+...++....+ |++++++++-+
T Consensus       227 ~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf  306 (316)
T KOG3894|consen  227 LNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSF  306 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence            45566778888999999999999999999999999999999999999999999999998777765555 66666555555


Q ss_pred             HHHHHHHH
Q 042996          224 GVIAIIIV  231 (261)
Q Consensus       224 ~Ii~vi~~  231 (261)
                      .++|+-||
T Consensus       307 ~lLFldwy  314 (316)
T KOG3894|consen  307 SLLFLDWY  314 (316)
T ss_pred             HHHHHhhc
Confidence            55555554

>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

Probab=96.85  E-value=0.013  Score=39.28  Aligned_cols=57  Identities=21%  Similarity=0.358  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          147 ETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKE  203 (261)
Q Consensus       147 ~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~  203 (261)
                      +....|......+.+..+++.++...+..|.+.|.++...++.+...+..+.+-|..
T Consensus         3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k   59 (60)
T cd00193           3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK   59 (60)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456778899999999999999999999999999999999999999999999987754

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.71  E-value=0.065  Score=41.49  Aligned_cols=73  Identities=10%  Similarity=0.282  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHH
Q 042996          148 TDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQ----VATDKCIMAMLFL  220 (261)
Q Consensus       148 ~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr----~~~dK~i~~~iil  220 (261)
                      .++.+.++++.++|+.+|-.+-.+..-.--+.|....++.+.....-+.=++.-..+.|.    .+..+++++++++
T Consensus        27 ~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~  103 (116)
T KOG0860|consen   27 ANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVII  103 (116)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666777777888887777777777777888888888777766665544444444444    3444444444443

>PRK10884 SH3 domain-containing protein; Provisional

Probab=96.08  E-value=0.29  Score=42.01  Aligned_cols=88  Identities=13%  Similarity=0.184  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 042996          145 MDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIG  224 (261)
Q Consensus       145 l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iill~i~  224 (261)
                      +++.....+.-...+.+..+-..+...+|..+.+.+   ...+......+...+..+....+.... +|+++++.+++++
T Consensus       109 l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L---~~~l~~~~~~~~~l~~~~~~~~~~~~~-~wf~~Gg~v~~~G  184 (206)
T PRK10884        109 LNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKL---KNQLIVAQKKVDAANLQLDDKQRTIIM-QWFMYGGGVAGIG  184 (206)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHchHHHHHH
Confidence            333333333333333333333444445566555555   344444555555555555555554443 5888888877777


Q ss_pred             HHHHHHHhhccC
Q 042996          225 VIAIIIVKLVNP  236 (261)
Q Consensus       225 Ii~vi~~k~~~~  236 (261)
                      +++-+++-.+.|
T Consensus       185 lllGlilp~l~p  196 (206)
T PRK10884        185 LLLGLLLPHLIP  196 (206)
T ss_pred             HHHHHHhccccc
Confidence            776555544443

>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea

Probab=94.64  E-value=0.44  Score=33.40  Aligned_cols=55  Identities=20%  Similarity=0.429  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHhh
Q 042996          179 QMSRIVNELDSIHFSIKKASQ-LVKEIGRQVATDKCIMAMLFL-IVIGVIAIIIVKL  233 (261)
Q Consensus       179 ~l~~~~~~l~~i~~~L~~s~~-~l~~m~rr~~~dK~i~~~iil-l~i~Ii~vi~~k~  233 (261)
                      ....+.+++++++..+.-.+. +-..+.++.-.|=-|+|++++ +++.++++++.++
T Consensus        13 ~~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Glii~~~~~~l~~~   69 (70)
T PF04210_consen   13 DFNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGLIIFIIYIVLSSM   69 (70)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345566667777777766664 446788999999899999876 6666555555443

This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane

>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G

Probab=94.15  E-value=0.71  Score=32.34  Aligned_cols=54  Identities=20%  Similarity=0.426  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHhh
Q 042996          180 MSRIVNELDSIHFSIKKASQ-LVKEIGRQVATDKCIMAMLFL-IVIGVIAIIIVKL  233 (261)
Q Consensus       180 l~~~~~~l~~i~~~L~~s~~-~l~~m~rr~~~dK~i~~~iil-l~i~Ii~vi~~k~  233 (261)
                      ...+.+++++++..+...+. +-....++.-.|=-|+|++++ +++.+++.+++.+
T Consensus        14 ~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~viGlli~~~~~~l~~~   69 (70)
T TIGR01149        14 FNEVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVIGLILFLIYILLSSM   69 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44556666666666666664 446788888889899998776 6555555554443

coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.66  E-value=4.2  Score=34.95  Aligned_cols=28  Identities=14%  Similarity=0.267  Sum_probs=16.5

Q ss_pred             hhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 042996          141 GNRMMDETDQAIERSKQVVHETINVGTE  168 (261)
Q Consensus       141 ~~~~l~~~~~~L~~s~~~~~ete~ig~~  168 (261)
                      ...++-..+++|.++.+.+.+.-.++.+
T Consensus       119 QR~rLl~nTerLeRst~rl~ds~Ria~E  146 (220)
T KOG1666|consen  119 QRARLLQNTERLERSTDRLKDSQRIALE  146 (220)
T ss_pred             HHHHHHhhhHHHHHhHHHHHHHHHHHHH
Confidence            4445555666666666666666665555

>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional

Probab=93.65  E-value=0.9  Score=32.56  Aligned_cols=56  Identities=23%  Similarity=0.421  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHhhc
Q 042996          179 QMSRIVNELDSIHFSIKKASQ-LVKEIGRQVATDKCIMAMLFL-IVIGVIAIIIVKLV  234 (261)
Q Consensus       179 ~l~~~~~~l~~i~~~L~~s~~-~l~~m~rr~~~dK~i~~~iil-l~i~Ii~vi~~k~~  234 (261)
                      -...+.+++++++..+..++. +-....++.-.|=-|+|++++ +++.++...+..++
T Consensus        16 d~~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viGlli~~i~~~~~~~~   73 (77)
T PRK01026         16 DFKEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIGLLIVLVYIILSPIF   73 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666777777777777765 446788889999899998776 55555555544443

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=93.55  E-value=0.044  Score=43.46  Aligned_cols=34  Identities=6%  Similarity=0.195  Sum_probs=18.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhccCC-CCccCCCC
Q 042996          212 KCIMAMLFLIVIGVIAIIIVKLVNPN-NKDIRDIP  245 (261)
Q Consensus       212 K~i~~~iill~i~Ii~vi~~k~~~~~-~~~~~~~~  245 (261)
                      ||++++||+++|+|+|++++.+-+++ .+..+.+.
T Consensus         1 RW~l~~iii~~i~l~~~~~~~~~rRR~r~G~~P~~   35 (130)
T PF12273_consen    1 RWVLFAIIIVAILLFLFLFYCHNRRRRRRGLQPIY   35 (130)
T ss_pred             CeeeHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcC
Confidence            57777777655555555555554433 33444443

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.51  E-value=0.4  Score=42.89  Aligned_cols=64  Identities=19%  Similarity=0.394  Sum_probs=57.8

Q ss_pred             hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          141 GNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEI  204 (261)
Q Consensus       141 ~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m  204 (261)
                      ....-++....|.....++.....++.++..+|..|.+.|.+++++++..+..+..+++-++.+
T Consensus       209 ~~~~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kL  272 (273)
T KOG3065|consen  209 EPAAEDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKL  272 (273)
T ss_pred             CChhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhc
Confidence            3445567889999999999999999999999999999999999999999999999999877654

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=93.02  E-value=6.1  Score=34.96  Aligned_cols=62  Identities=10%  Similarity=0.216  Sum_probs=40.2

Q ss_pred             hhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          140 SGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLV  201 (261)
Q Consensus       140 ~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l  201 (261)
                      .....+.+..+.|+++.....+++.+-...-..|..=..+...+.+.-..+...|..|+.+|
T Consensus       189 ~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L  250 (264)
T PF06008_consen  189 DYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLL  250 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566667777777777777777777666666666656666666666666666666655554

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]

Probab=92.87  E-value=1.2  Score=31.28  Aligned_cols=53  Identities=21%  Similarity=0.360  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHhhc
Q 042996          182 RIVNELDSIHFSIKKASQ-LVKEIGRQVATDKCIMAMLFL-IVIGVIAIIIVKLV  234 (261)
Q Consensus       182 ~~~~~l~~i~~~L~~s~~-~l~~m~rr~~~dK~i~~~iil-l~i~Ii~vi~~k~~  234 (261)
                      .+++++++++..+.-.+. +-..+.++.-.|--|+|++++ |++..|.++..+.|
T Consensus        19 e~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGlVIGlil~~i~~~l~~~~   73 (75)
T COG4064          19 EIHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGLVIGLILCMIYILLGVAF   73 (75)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444443 335688888899899998765 55555544444433

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=90.98  E-value=4.8  Score=29.36  Aligned_cols=55  Identities=22%  Similarity=0.329  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 042996          170 AAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIII  230 (261)
Q Consensus       170 l~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iill~i~Ii~vi~  230 (261)
                      +++|..+.+.|...-.....      .|+++=+.|-.+-+.-++++++++++++.+|++++
T Consensus        33 L~~L~~kt~~L~~~a~~F~k------~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i~~~~   87 (89)
T PF00957_consen   33 LEELEDKTEELSDNAKQFKK------NAKKLKRKMWWRNYKLYIIIIIIVIIIILIIIIVI   87 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHH
Confidence            45666666666655554443      45555566777777888888888776666665443

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.01  E-value=13  Score=32.67  Aligned_cols=65  Identities=15%  Similarity=0.213  Sum_probs=39.2

Q ss_pred             hhHHHHHHhhhhhhHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          132 MTNQQLMDSGNRMMDETD---QAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQ  199 (261)
Q Consensus       132 ~~~~~ll~~~~~~l~~~~---~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~  199 (261)
                      ..+++++....+.++.-.   .++......+.+.-+.-..+++   ..-.-+++++.+++.....+..-++
T Consensus       141 ~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llD---dl~~e~d~t~srl~~~~~~l~~v~~  208 (235)
T KOG3202|consen  141 QLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLD---DLDNEMDRTESRLDRVMKRLAKVNR  208 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566654444454444   4444444444444444444554   5566788888898888888877777

>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C

Probab=89.92  E-value=0.42  Score=31.79  Aligned_cols=38  Identities=21%  Similarity=0.308  Sum_probs=27.9

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhccCC
Q 042996          200 LVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPN  237 (261)
Q Consensus       200 ~l~~m~rr~~~dK~i~~~iill~i~Ii~vi~~k~~~~~  237 (261)
                      ..+.+-+|...||..+++.+++++.+++.++.-++-+-
T Consensus         4 ~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~   41 (56)
T PF12911_consen    4 PWKDAWRRFRRNKLAVIGLIILLILVLLAIFAPFISPY   41 (56)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            45678899999999988887766666666666666553

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=89.56  E-value=1.2  Score=30.49  Aligned_cols=30  Identities=10%  Similarity=0.279  Sum_probs=19.2

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 042996          199 QLVKEIGRQVATDKCIMAMLFLIVIGVIAI  228 (261)
Q Consensus       199 ~~l~~m~rr~~~dK~i~~~iill~i~Ii~v  228 (261)
                      .....-.+++.+.+++++++++++++++++
T Consensus        26 ~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~   55 (59)
T PF09889_consen   26 EEYRKRQKRMRKTQYIFFGIFILFLAVWIF   55 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666777778888887655555433

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.66  E-value=9.8  Score=29.58  Aligned_cols=51  Identities=12%  Similarity=0.199  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 042996          170 AAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVI  223 (261)
Q Consensus       170 l~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iill~i  223 (261)
                      |++|.+-.++|....+........|.+-   +-.-..+++.==++.++|+++++
T Consensus        59 L~~L~drad~L~~~as~F~~~A~klkrk---~wWkn~Km~~il~~v~~i~l~ii  109 (116)
T KOG0860|consen   59 LDELDDRADQLQAGASQFEKTAVKLKRK---MWWKNCKMRIILGLVIIILLVVI  109 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678888888888888877776666543   22223333333356666555333

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=88.30  E-value=7  Score=27.46  Aligned_cols=18  Identities=22%  Similarity=0.266  Sum_probs=10.3

Q ss_pred             hhhhHHHHHHHHHHHHHH
Q 042996          209 ATDKCIMAMLFLIVIGVI  226 (261)
Q Consensus       209 ~~dK~i~~~iill~i~Ii  226 (261)
                      ...||+..+++..+++.+
T Consensus        48 ~n~kW~~r~iiGaiI~~i   65 (71)
T PF10779_consen   48 SNTKWIWRTIIGAIITAI   65 (71)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            455777777666343333

>KOG2678 consensus Predicted membrane protein [Function unknown]

Probab=88.23  E-value=16  Score=31.63  Aligned_cols=79  Identities=13%  Similarity=0.169  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHhhccC
Q 042996          158 VVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFL-IVIGVIAIIIVKLVNP  236 (261)
Q Consensus       158 ~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iil-l~i~Ii~vi~~k~~~~  236 (261)
                      ++........+...-|...++++..+...++.-...|+-...-+....+.-..+++.+..||+ ++..|..|++.+||++
T Consensus       163 LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFVsMiliiqifkk  242 (244)
T KOG2678|consen  163 LARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFVSMILIIQIFKK  242 (244)
T ss_pred             HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            334444555566677889999999999999998888888888888877776655433333333 5555558888888875

>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=86.63  E-value=0.9  Score=39.31  Aligned_cols=32  Identities=9%  Similarity=0.135  Sum_probs=22.5

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHhhccC
Q 042996          205 GRQVATDKCIMAMLFLIVIGVIAIIIVKLVNP  236 (261)
Q Consensus       205 ~rr~~~dK~i~~~iill~i~Ii~vi~~k~~~~  236 (261)
                      .+|-.+|+++=++|++++++||++.|.-||+.
T Consensus         7 ~KrRK~N~iLNiaI~IV~lLIiiva~~lf~~~   38 (217)
T PF07423_consen    7 QKRRKTNKILNIAIGIVSLLIIIVAYQLFFGG   38 (217)
T ss_pred             HHhhhhhhhHHHHHHHHHHHHHHHhhhheecC
Confidence            35566777776777777778878888777754

The function of this family is unknown.

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=86.54  E-value=43  Score=34.66  Aligned_cols=41  Identities=24%  Similarity=0.460  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHH
Q 042996           50 KMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYV   95 (261)
Q Consensus        50 ~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~   95 (261)
                      .+.++...+.+++..+..+     ...-.++...++..+.+++...
T Consensus       247 ~~~~~~~~L~~v~~~~~~L-----~~~~~qL~~~L~~vK~~L~~~l  287 (806)
T PF05478_consen  247 AMQETKELLQNVNSSLKDL-----QEYQSQLRDGLRGVKRDLNNTL  287 (806)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777665443     2223345555666666655543

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.33  E-value=13  Score=32.02  Aligned_cols=81  Identities=14%  Similarity=0.180  Sum_probs=55.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 042996          149 DQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAI  228 (261)
Q Consensus       149 ~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iill~i~Ii~v  228 (261)
                      ...+......+.++..+-+..++++..-.+.|......-.+....-..-.+..+.|.++..-++|-.+    ++++++++
T Consensus       133 ~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~----~~~~~~l~  208 (216)
T KOG0862|consen  133 QRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAAY----VVFFVLLL  208 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence            57777778888888888888999998888888777766666655555556666777777766665522    23334444


Q ss_pred             HHHhh
Q 042996          229 IIVKL  233 (261)
Q Consensus       229 i~~k~  233 (261)
                      +|++|
T Consensus       209 f~~~f  213 (216)
T KOG0862|consen  209 FYVRF  213 (216)
T ss_pred             HHHHH
Confidence            44444

>PHA03049 IMV membrane protein; Provisional

Probab=85.58  E-value=1.4  Score=30.55  Aligned_cols=25  Identities=20%  Similarity=0.432  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHhhccCCCCccCCCC
Q 042996          221 IVIGVIAIIIVKLVNPNNKDIRDIP  245 (261)
Q Consensus       221 l~i~Ii~vi~~k~~~~~~~~~~~~~  245 (261)
                      ++++||..|+|.+..++...-..+|
T Consensus        10 ICVaIi~lIvYgiYnkk~~~q~~~p   34 (68)
T PHA03049         10 ICVVIIGLIVYGIYNKKTTTSQNPP   34 (68)
T ss_pred             HHHHHHHHHHHHHHhcccccCCCCC
Confidence            4455555555656555433333343

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=84.41  E-value=0.9  Score=35.72  Aligned_cols=22  Identities=27%  Similarity=0.312  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc
Q 042996          214 IMAMLFLIVIGVIAIIIVKLVN  235 (261)
Q Consensus       214 i~~~iill~i~Ii~vi~~k~~~  235 (261)
                      |.+++++=+|++|++|+|.+-|
T Consensus        69 Ii~gv~aGvIg~Illi~y~irR   90 (122)
T PF01102_consen   69 IIFGVMAGVIGIILLISYCIRR   90 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Confidence            4444444334444444444433

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PRK11637 AmiB activator; Provisional

Probab=83.51  E-value=41  Score=31.87  Aligned_cols=79  Identities=14%  Similarity=0.201  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHH
Q 042996            8 DDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSM   87 (261)
Q Consensus         8 ~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~   87 (261)
                      +.+++++.+++.+-++|...-..+.      +-...+..++..|..+..-|...+.++..+.     ..-..+..++..+
T Consensus        47 ~~l~~l~~qi~~~~~~i~~~~~~~~------~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~-----~ei~~l~~eI~~~  115 (428)
T PRK11637         47 DQLKSIQQDIAAKEKSVRQQQQQRA------SLLAQLKKQEEAISQASRKLRETQNTLNQLN-----KQIDELNASIAKL  115 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence            3455555555554444432222221      1223344455555555555554444443221     1112334444555


Q ss_pred             HHHHHHHHHH
Q 042996           88 VKELNSYVAL   97 (261)
Q Consensus        88 ~~~l~~~~~~   97 (261)
                      +.+++..+..
T Consensus       116 q~~l~~~~~~  125 (428)
T PRK11637        116 EQQQAAQERL  125 (428)
T ss_pred             HHHHHHHHHH
Confidence            5555544433

>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=82.60  E-value=2  Score=27.35  Aligned_cols=29  Identities=17%  Similarity=0.395  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCccCCC
Q 042996          216 AMLFLIVIGVIAIIIVKLVNPNNKDIRDI  244 (261)
Q Consensus       216 ~~iill~i~Ii~vi~~k~~~~~~~~~~~~  244 (261)
                      ++|..+++++..+-+|.-|+|+++...||
T Consensus         9 i~i~~~lv~~Tgy~iYtaFGppSk~LrDP   37 (43)
T PF02468_consen    9 IFISCLLVSITGYAIYTAFGPPSKELRDP   37 (43)
T ss_pred             HHHHHHHHHHHhhhhhheeCCCccccCCc
Confidence            33444777888888888889988887775

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=80.78  E-value=30  Score=28.36  Aligned_cols=83  Identities=16%  Similarity=0.318  Sum_probs=39.4

Q ss_pred             hhHHHHHHHHHHHHHHHH---HHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHH
Q 042996            6 ISDDLAEINGQITDIFRA---LSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSE   82 (261)
Q Consensus         6 ~s~~l~~~e~~~~~i~~~---i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~   82 (261)
                      |..++..+.+++..+=.+   +.+.+..|...+..++....+..++..+...+.-|..+.-...    ...++.+.++..
T Consensus        77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~----~vs~ee~~~~~~  152 (169)
T PF07106_consen   77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSK----PVSPEEKEKLEK  152 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CCCHHHHHHHHH
Confidence            334444444444443332   2333333444333455556666666666666665555554321    234555555555


Q ss_pred             HHHHHHHHHH
Q 042996           83 KKQSMVKELN   92 (261)
Q Consensus        83 ~~~~~~~~l~   92 (261)
                      ....+...+.
T Consensus       153 ~~~~~~k~w~  162 (169)
T PF07106_consen  153 EYKKWRKEWK  162 (169)
T ss_pred             HHHHHHHHHH
Confidence            5444444443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	261
2nps_C	81	Vesicle transport through interaction with T- snar	3e-09
1l4a_C	83	S-SNAP25 fusion protein; snare, snare complex, mem	2e-05
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	2e-05
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	4e-04

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 81

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 13/78 (16%), Positives = 35/78 (44%)

Query: 135 QQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSI 194
           +  +      ++ + + +E   Q+  ET  +G E    L    E++ R    L     ++
Sbjct: 4   RAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANL 63

Query: 195 KKASQLVKEIGRQVATDK 212
            K+S+++  + R++  ++
Sbjct: 64  GKSSRILTGMLRRIIQNR 81

>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Length = 83

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 17/72 (23%), Positives = 37/72 (51%)

Query: 135 QQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSI 194
           +++    N++ D++ ++  R   +  E+   G  T  +L  Q EQ+ RI   LD I+  +
Sbjct: 12  EEIQQQCNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDM 71

Query: 195 KKASQLVKEIGR 206
           K A + ++ + +
Sbjct: 72  KDAEKNLEGMEK 83

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Length = 79

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 18/72 (25%), Positives = 43/72 (59%)

Query: 135 QQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSI 194
           +++    +++ DE+ ++  R  Q+V E+ + G  T  +L  Q EQ+ R+   ++ I+  +
Sbjct: 8   EEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDM 67

Query: 195 KKASQLVKEIGR 206
           K+A + +K++G+
Sbjct: 68  KEAEKNLKDLGK 79

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65

 Score = 37.1 bits (86), Expect = 4e-04
 Identities = 18/62 (29%), Positives = 36/62 (58%)

Query: 145 MDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEI 204
           M+   Q+IERS ++  ET  +GTE    L  Q +Q+ R  + L + + ++ K+ ++++ +
Sbjct: 4   MNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSM 63

Query: 205 GR 206
            R
Sbjct: 64  SR 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
2nps_C	81	Vesicle transport through interaction with T- snar	99.77
2qyw_A	102	Vesicle transport through interaction with T-SNAR	99.67
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	99.6
1vcs_A	102	Vesicle transport through interaction with T- snar	99.6
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	99.54
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	99.41
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	99.02
1l4a_C	83	S-SNAP25 fusion protein; snare, snare complex, mem	98.73
3b5n_C	70	Protein transport protein SEC9; snare complex, syn	98.64
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	98.46
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	97.46
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	97.41
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	97.39
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	97.23
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	97.22
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	97.17
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	96.95
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	95.84
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	94.9
1n7s_B	68	Syntaxin 1A; neuronal snare protein complex, four	94.81
3b5n_B	69	Protein SSO1; snare complex, syntaxin, synaptobrev	94.8
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	94.79
2nps_B	71	Syntaxin 13, vesicle-associated membrane protein 4	94.74
1gl2_B	65	Syntaxin 7; membrane protein, membrane fusion prot	94.53
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.96
1sfc_B	83	Protein (syntaxin 1A), protein (synaptobrevin 2);	93.65
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	93.2
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	91.9
2avr_X	119	Adhesion A; antiparallel helix-loop-helix, leucine	83.15
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	82.79
3c98_B	279	Syntaxin-1A; protein complex, alternative splicing	82.24
4aj5_A	91	SKA1, spindle and kinetochore-associated protein 1	80.25

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=99.77  E-value=2.4e-18  Score=124.83  Aligned_cols=79  Identities=19%  Similarity=0.357  Sum_probs=75.2

Q ss_pred             hHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 042996          133 TNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDK  212 (261)
Q Consensus       133 ~~~~ll~~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK  212 (261)
                      +|++|+. +++.+++++++|.++.+++.|||+||.+|+.+|+.|||+|.++++.++++++++++|.++|+.|.||+++||
T Consensus         3 qR~~Ll~-~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK   81 (81)
T 2nps_C            3 MRAHLLD-NTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR   81 (81)
T ss_dssp             TTTHHHH-HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence            6778887 999999999999999999999999999999999999999999999999999999999999999999999987

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=99.67  E-value=5.9e-16  Score=117.16  Aligned_cols=90  Identities=11%  Similarity=0.192  Sum_probs=82.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHH
Q 042996            5 SISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKK   84 (261)
Q Consensus         5 ~~s~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~   84 (261)
                      +||+.|++||++|+.++.+|...+..+.....+++|+..+++++..|+||+++|.||++|++++    |++.|..|..++
T Consensus        12 ~mSelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~----p~s~R~~~~~kl   87 (102)
T 2qyw_A           12 ASSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYA----PLTFRNPMMSKL   87 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----CHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence            4689999999999999999999999987654569999999999999999999999999999855    688999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 042996           85 QSMVKELNSYVALK   98 (261)
Q Consensus        85 ~~~~~~l~~~~~~~   98 (261)
                      +.|+++|+++++++
T Consensus        88 r~Yk~dL~~lk~el  101 (102)
T 2qyw_A           88 RNYRKDLAKLHREV  101 (102)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999988664

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=99.60  E-value=1.1e-14  Score=109.22  Aligned_cols=93  Identities=12%  Similarity=0.141  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHH
Q 042996            8 DDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSM   87 (261)
Q Consensus         8 ~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~   87 (261)
                      +.|++||++|+.++.+|...+..+..+ .|++|+..+++++..++||+++|.||++|++++.  .|++.|..|..+++.|
T Consensus         1 ~lF~~YE~df~~~~~~i~~~l~~~~~~-~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~--~p~~~R~~~~~klr~Y   77 (97)
T 3onj_A            1 SLLISYESDFKTTLEQAKASLAEAPSQ-PLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSI--GDASERATYKAKLREW   77 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHH
Confidence            479999999999999999999999875 5789999999999999999999999999999762  2578899999999999


Q ss_pred             HHHHHH-HHHHHHHHhh
Q 042996           88 VKELNS-YVALKKQHQT  103 (261)
Q Consensus        88 ~~~l~~-~~~~~k~~~~  103 (261)
                      ++++++ +++.++++.+
T Consensus        78 k~dl~~~lk~~lk~l~d   94 (97)
T 3onj_A           78 KKTIQSDIKRPLQSLVD   94 (97)
T ss_dssp             HHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            999999 9999887764

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1

Probab=99.60  E-value=1.6e-15  Score=114.78  Aligned_cols=94  Identities=14%  Similarity=0.299  Sum_probs=84.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHH
Q 042996            5 SISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKK   84 (261)
Q Consensus         5 ~~s~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~   84 (261)
                      ++|+.|++||++|+.++.+|...+..+..+ .+++|+..+++++..|+||+++|.||++|++++    |++.|..|..++
T Consensus         2 ~sSelFe~YE~df~~l~~~i~~kl~~i~~~-~geerk~~i~~ie~~l~EA~ell~qMelE~r~~----p~~~R~~~~~kl   76 (102)
T 1vcs_A            2 SSGSSGEGYEQDFAVLTAEITSKIARVPRL-PPDEKKQMVANVEKQLEEARELLEQMDLEVREI----PPQSRGMYSNRM   76 (102)
T ss_dssp             CCCCCCCCSHHHHHHHHHHHHHHHHHGGGS-CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTTTHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhcc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CHHhHHHHHHHH
Confidence            457899999999999999999999998875 578999999999999999999999999999865    567789999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 042996           85 QSMVKELNSYVALKKQHQT  103 (261)
Q Consensus        85 ~~~~~~l~~~~~~~k~~~~  103 (261)
                      +.|+++|++++++++.+..
T Consensus        77 r~Yk~dL~~lk~elk~~~~   95 (102)
T 1vcs_A           77 RSYKQEMGKLETDFKRSRI   95 (102)
T ss_dssp             HHHHHHHHHHHHHTHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999988776543

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=99.54  E-value=1.6e-14  Score=100.28  Aligned_cols=64  Identities=28%  Similarity=0.446  Sum_probs=58.4

Q ss_pred             hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          143 RMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGR  206 (261)
Q Consensus       143 ~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~r  206 (261)
                      +++++++++|.++.+++.|||++|.+|+.+|+.|||+|.++++++++++++|++|.++|+.|.|
T Consensus         2 ~rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R   65 (65)
T 1gl2_C            2 SHMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR   65 (65)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence            4688999999999999999999999999999999999999999999999999999999999976

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=99.41  E-value=2.5e-12  Score=92.54  Aligned_cols=74  Identities=24%  Similarity=0.442  Sum_probs=69.4

Q ss_pred             hHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          133 TNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGR  206 (261)
Q Consensus       133 ~~~~ll~~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~r  206 (261)
                      ..+.+..++..+++++++++.++.+++.||+++|.+|+.+|+.|+|+|.+++..+++++++|++|.++|+.|.+
T Consensus         6 ~~q~l~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~k   79 (79)
T 1n7s_C            6 ELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLGK   79 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhcC
Confidence            34556677899999999999999999999999999999999999999999999999999999999999999974

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=99.02  E-value=8.4e-10  Score=73.54  Aligned_cols=52  Identities=27%  Similarity=0.435  Sum_probs=49.7

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          153 ERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEI  204 (261)
Q Consensus       153 ~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m  204 (261)
                      .++.+++.|++++|..|+.+|+.|+|+|.++++.++++++++++|.++|+.|
T Consensus         3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m   54 (54)
T 1nhl_A            3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL   54 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence            5788999999999999999999999999999999999999999999999864

>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=98.73  E-value=2.3e-08  Score=72.16  Aligned_cols=73  Identities=23%  Similarity=0.358  Sum_probs=64.9

Q ss_pred             hHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          133 TNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIG  205 (261)
Q Consensus       133 ~~~~ll~~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~  205 (261)
                      ..+.+..+...+.+.+..+..++.+++.+++++|..++..|+.|.|+|.+++..++.|+.++..|.+.|+.|.
T Consensus        10 ~~q~l~~~~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~   82 (83)
T 1l4a_C           10 ELEEIQQQCNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGME   82 (83)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3445556677788999999999999999999999999999999999999999999999999999999887664

>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=98.64  E-value=3.5e-07  Score=63.87  Aligned_cols=62  Identities=19%  Similarity=0.283  Sum_probs=58.6

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIG  205 (261)
Q Consensus       144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~  205 (261)
                      +.+++..+-.++.+++.+++++|..++..|+.|.|+|.+++..++.++.++..|.+.++.+.
T Consensus         6 ~~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk   67 (70)
T 3b5n_C            6 TKQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELK   67 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45678889999999999999999999999999999999999999999999999999999875

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=98.46  E-value=6.6e-06  Score=62.48  Aligned_cols=83  Identities=14%  Similarity=0.191  Sum_probs=67.2

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHH
Q 042996          144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKE---IGRQVATDKCIMAMLFL  220 (261)
Q Consensus       144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~---m~rr~~~dK~i~~~iil  220 (261)
                      -..+-...+.+.++.+.|..++..+...-+..|.+.++++..++..+..++..|++.|+.   +.++....+|+++++++
T Consensus        15 ~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~   94 (109)
T 3hd7_B           15 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCV   94 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHH
Confidence            456677889999999999999999999999999999999999999999999999998854   55556665565555444


Q ss_pred             HHHHHH
Q 042996          221 IVIGVI  226 (261)
Q Consensus       221 l~i~Ii  226 (261)
                      ++++|+
T Consensus        95 i~~~i~  100 (109)
T 3hd7_B           95 ILGIII  100 (109)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            343333

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}

Probab=97.46  E-value=0.00048  Score=49.34  Aligned_cols=70  Identities=16%  Similarity=0.223  Sum_probs=58.2

Q ss_pred             hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042996          141 GNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVAT  210 (261)
Q Consensus       141 ~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~  210 (261)
                      ....+.+.++.|......+....++|.+|.++|..|.+.|+++.+.++.+.+.|..+++-+..+.++...
T Consensus        10 Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~   79 (82)
T 2nps_D           10 GNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSD   79 (82)
T ss_dssp             --------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            3445667788899999999999999999999999999999999999999999999999999999887543

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=97.41  E-value=0.0056  Score=44.64  Aligned_cols=63  Identities=8%  Similarity=0.164  Sum_probs=48.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042996          149 DQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATD  211 (261)
Q Consensus       149 ~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~d  211 (261)
                      ++.|...+..++|+..+-.+-++.+-+..|.|+...++.++..+.-..=.+.=+.+.|++.-.
T Consensus         4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwk   66 (91)
T 3hd7_A            4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK   66 (91)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888888888888888899999999999999888887777665555556666665444

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=97.39  E-value=0.00067  Score=46.32  Aligned_cols=62  Identities=16%  Similarity=0.310  Sum_probs=51.8

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIG  205 (261)
Q Consensus       144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~  205 (261)
                      .+.+.++.|......+....++|.+|.++|..|.+.|.++.+.++.+++.|..+.+-+..+.
T Consensus         3 ~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~   64 (65)
T 1gl2_D            3 HMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVD   64 (65)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46678888999999999999999999999999999999999999999999999998877664

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=97.23  E-value=0.002  Score=46.59  Aligned_cols=65  Identities=18%  Similarity=0.280  Sum_probs=59.4

Q ss_pred             hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGR  206 (261)
Q Consensus       142 ~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~r  206 (261)
                      .....+.+..|......+....++|.+|..+|..|.+.|.++..+++.+++.|..+++-++.+.+
T Consensus        21 d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~   85 (87)
T 1sfc_D           21 DARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG   85 (87)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence            34566888999999999999999999999999999999999999999999999999998887654

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.0026  Score=43.30  Aligned_cols=60  Identities=17%  Similarity=0.273  Sum_probs=54.7

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKE  203 (261)
Q Consensus       144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~  203 (261)
                      .-++....|.....++.....+|.++..+|..|.++|.++..+++.++..+..+++-|..
T Consensus         4 ~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~   63 (64)
T 3b5n_D            4 MELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG   63 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            445678889999999999999999999999999999999999999999999999887654

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B

Probab=97.17  E-value=0.0037  Score=42.65  Aligned_cols=61  Identities=20%  Similarity=0.319  Sum_probs=55.6

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEI  204 (261)
Q Consensus       144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m  204 (261)
                      ...+....|......+.....+|.+|..+|..|.+.|.++..+++.+++.|..+++-++.+
T Consensus         4 ~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l   64 (66)
T 1n7s_D            4 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM   64 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            3456788899999999999999999999999999999999999999999999999887765

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=96.95  E-value=0.0032  Score=45.53  Aligned_cols=64  Identities=14%  Similarity=0.235  Sum_probs=57.6

Q ss_pred             hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          143 RMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGR  206 (261)
Q Consensus       143 ~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~r  206 (261)
                      ....+.++.|......+.....+|.++..+|..|.+.|.++.++++.++..|..+++-++.+.+
T Consensus        23 ~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~   86 (87)
T 1l4a_D           23 AREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLK   86 (87)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC-
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3566788999999999999999999999999999999999999999999999999988876543

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B

Probab=95.84  E-value=0.11  Score=36.21  Aligned_cols=63  Identities=14%  Similarity=0.183  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          145 MDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQ  207 (261)
Q Consensus       145 l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr  207 (261)
                      ...-...+.+..+.+.|..++..+...-...|.+.|+++..++..+..++..|..-|..-.+.
T Consensus         5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~   67 (77)
T 1jth_B            5 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY   67 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445567788999999999999999999999999999999999999999999999988775543

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B

Probab=94.90  E-value=0.7  Score=39.85  Aligned_cols=71  Identities=14%  Similarity=0.187  Sum_probs=50.5

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHH
Q 042996          144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKE---IGRQVATDKCI  214 (261)
Q Consensus       144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~---m~rr~~~dK~i  214 (261)
                      ....-...+.+..+.+.|..++..+...-...|.+.|+++..++..+..++..|..-|..   +.++....|||
T Consensus       194 ~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~~  267 (267)
T 1dn1_B          194 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM  267 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            455666779999999999999999999999999999999999999999999998887753   55555555554

>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B

Probab=94.81  E-value=0.39  Score=32.58  Aligned_cols=60  Identities=15%  Similarity=0.199  Sum_probs=54.4

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKE  203 (261)
Q Consensus       144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~  203 (261)
                      ....-...+.+..+.+.|..++..+...-...|.+.|+++..++..+..++..|..-|..
T Consensus         6 ~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k   65 (68)
T 1n7s_B            6 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK   65 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667778999999999999999999999999999999999999999999999988764

>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=94.80  E-value=0.42  Score=32.57  Aligned_cols=61  Identities=8%  Similarity=0.163  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          145 MDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIG  205 (261)
Q Consensus       145 l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~  205 (261)
                      +..-...+.+..+.+.|..++..+...-...|.+.|+++..++..+..++..|..-|..=.
T Consensus         5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~   65 (69)
T 3b5n_B            5 VQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAV   65 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456677889999999999999999999999999999999999999999999999886543

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=94.79  E-value=0.0029  Score=48.47  Aligned_cols=73  Identities=8%  Similarity=0.190  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 042996          148 TDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFL  220 (261)
Q Consensus       148 ~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iil  220 (261)
                      +.+.|...+..++|+..+-.+.++.+-+..|.|+...++.++....-..=.+.-+.+.|++.-.++-++++++
T Consensus        31 ~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~  103 (119)
T 2kog_A           31 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILG  103 (119)
T ss_dssp             SCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777777788888888888888888888888887777766555555555555666665544444444433

>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=94.74  E-value=0.39  Score=32.87  Aligned_cols=59  Identities=14%  Similarity=0.228  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          149 DQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQ  207 (261)
Q Consensus       149 ~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr  207 (261)
                      ...+.+..+.+.|..++..+...-...|.+.|+++..++..+..++..|..-|..-.+.
T Consensus         5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~   63 (71)
T 2nps_B            5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY   63 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888999999999999999999999999999999999999999999988664443

>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=94.53  E-value=0.38  Score=32.41  Aligned_cols=57  Identities=12%  Similarity=0.252  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          147 ETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKE  203 (261)
Q Consensus       147 ~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~  203 (261)
                      .-...+.+..+.+.+..++..+...-...|.+.|+++..++..+..++..|..-|..
T Consensus         6 eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k   62 (65)
T 1gl2_B            6 ERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSR   62 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567888999999999999999999999999999999999999999999988764

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=93.96  E-value=11  Score=43.16  Aligned_cols=66  Identities=6%  Similarity=0.046  Sum_probs=52.7

Q ss_pred             hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          141 GNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGR  206 (261)
Q Consensus       141 ~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~r  206 (261)
                      ..+.+..+...|...+..+.+.++-=...-.++..-...-.....++..+...|.+|.+++...+-
T Consensus      2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A         2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            556677788888888888887777666666666776777788889999999999999999988764

>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B

Probab=93.65  E-value=0.9  Score=32.02  Aligned_cols=63  Identities=14%  Similarity=0.182  Sum_probs=56.5

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGR  206 (261)
Q Consensus       144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~r  206 (261)
                      ....-...+.+..+.+.|..++..+...-...|.+.|+++..++..+..++..|..-|..-.+
T Consensus        15 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~   77 (83)
T 1sfc_B           15 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK   77 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355667779999999999999999999999999999999999999999999999998876543

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}

Probab=93.20  E-value=1.3  Score=38.29  Aligned_cols=60  Identities=20%  Similarity=0.291  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996          145 MDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEI  204 (261)
Q Consensus       145 l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m  204 (261)
                      +..-...+..+.+.+.|..++..+...-...|.+.|++|..++..+..++..|..-|..-
T Consensus       212 i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA  271 (279)
T 2xhe_B          212 IRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQA  271 (279)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677899999999999999999999999999999999999999999999999887653

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=91.90  E-value=2.5  Score=30.26  Aligned_cols=71  Identities=7%  Similarity=0.168  Sum_probs=36.8

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 042996          144 MMDETDQAIERSKQVVHETINVGT---ETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFL  220 (261)
Q Consensus       144 ~l~~~~~~L~~s~~~~~ete~ig~---~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iil  220 (261)
                      .+.+....+++...++.+..+--.   +-++.|.+..+.|........      ..|+++=+.|--+-++-++++.++++
T Consensus         6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~------~~A~~l~rkmwwkn~K~~iii~~iv~   79 (91)
T 3hd7_A            6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE------TSAAKLKRKYWWKNLKMMIILGVICA   79 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555554444443222   224556666666655444333      34555556677777776666555544

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=82.79  E-value=37  Score=39.08  Aligned_cols=63  Identities=19%  Similarity=0.240  Sum_probs=40.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhhhhchhhhc-chhHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Q 042996            4 SSISDDLAEINGQITDIFRALSNGFQKLEKIK-DVNRQSRQLE----ELTDKMRECKRLIKEFDREVK   66 (261)
Q Consensus         4 ~~~s~~l~~~e~~~~~i~~~i~~~~~~L~~~~-~~~~r~~~i~----~i~~~l~ea~~ll~qme~Ev~   66 (261)
                      +.|...+..=..++.....-++.|+.+|.... ..++-+..+.    .++.+-.++++++.++..+-.
T Consensus      1902 ~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~ 1969 (3245)
T 3vkg_A         1902 NQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQ 1969 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777788888888888888876642 1222223333    344444677778888776643

>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}

Probab=82.24  E-value=3.8  Score=34.31  Aligned_cols=74  Identities=14%  Similarity=0.167  Sum_probs=51.9

Q ss_pred             hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHH
Q 042996          141 GNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKE---IGRQVATDKCI  214 (261)
Q Consensus       141 ~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~---m~rr~~~dK~i  214 (261)
                      +..........+..+...+.+..++..++..-...|.+.+..+...+..+...+..+..-+..   ..++..+.|||
T Consensus       203 ~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkkk~i  279 (279)
T 3c98_B          203 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM  279 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcC
Confidence            455677888999999999999999999999999999999999999999988877766665543   34444444554

>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}

Probab=80.25  E-value=14  Score=26.39  Aligned_cols=59  Identities=14%  Similarity=0.304  Sum_probs=38.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042996            7 SDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVK   66 (261)
Q Consensus         7 s~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~   66 (261)
                      +++|+++=.-++.-+..|...++ |..+......+..++++...+--+.++|+.||.||.
T Consensus         3 ~s~LEdlc~hineKIs~ikk~L~-Lr~~gqdP~lk~~L~Kig~Ei~~l~eLLn~~E~eV~   61 (91)
T 4aj5_A            3 SSDLEQLCSHVNEKIGNIKKTLS-LRNCGQEPTLKTVLNKIGDEIIVINELLNKLELEIQ   61 (91)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHH-HHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566655555555444443331 233322234668899999999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d1vcsa1	89	Vesicle transport v-SNARE protein Vti1-like 2 {Mou	99.55

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=7.8e-15  Score=106.31  Aligned_cols=86  Identities=14%  Similarity=0.334  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHH
Q 042996           11 AEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKE   90 (261)
Q Consensus        11 ~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~   90 (261)
                      ++||++|+.+..+|...++.+..+ .|++|++.+++++..++||+++|.||++|++++    |++.|..|..+++.|+++
T Consensus         1 E~YE~~y~~l~a~i~~kl~~i~~~-~geerk~~l~~ie~~leEA~ell~qMelEvr~~----p~s~R~~~~~klr~Yk~d   75 (89)
T d1vcsa1           1 EGYEQDFAVLTAEITSKIARVPRL-PPDEKKQMVANVEKQLEEARELLEQMDLEVREI----PPQSRGMYSNRMRSYKQE   75 (89)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHGGGS-CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTTTHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999875 578999999999999999999999999999865    567899999999999999


Q ss_pred             HHHHHHHHHHH
Q 042996           91 LNSYVALKKQH  101 (261)
Q Consensus        91 l~~~~~~~k~~  101 (261)
                      +++++++++..
T Consensus        76 l~~lk~elk~a   86 (89)
T d1vcsa1          76 MGKLETDFKRS   86 (89)
T ss_dssp             HHHHHHHTHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999887643