Citrus Sinensis ID: 043015

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
KPGLLLLLFVLSIVSIGWVNSHEESVLAKFKLGLITLDGHADDWEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKGENTRCPSIALMFQIGEDATYHNMGGCKKGTGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTPHCRYLDGMGPSERIQQLLKLQIGNATRMRFRNNCS
Secondary Structure (PSIPRED)
cccEEHHHHHHHHHHHHcccccccEEEEEEEccEEEEcccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEEEcccEEEccccccccccEEEEEEEccccEEEEccccccccccccccccccEEEEEEEEEEccccccccccccccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHccccEEEcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHcccEEEEEEEcccEEEEccccccHHHcccccccccccccccccccccccEEEEEEEEcccEEEEEEEEcccEEEcccccccccEEEEEEEcccccEEEccccccccccccccccccccEEEEEEEEEcccccccEcccccccccccccccccccccEEEEcccccccccccccccHHHHHHEHHcccHHHHHHccccc
Coil and Loop (DISEMBL)
KPGLLLLLFVLSIVSIGWVNSHEESVLAKFKLGLITldghaddwedingsefsllpaldlhaeheykSEKMNVKALHDGHDVYFLLQVdgeyayskgentrcpsIALMFQIgedatyhnmggckkgtgsctsktckghevdIMYFSIesaipgrlydgnpvdnsegnggdrfgHLVDVYVWtphcryldgmgpsERIQQLLKLQIGNATRMRFRNNCS
Flexible Loop (DISEMBL)
KPGLLLLLFVLSIVSIGWVNSHEESVLAKFKLGLITLDGHADDWEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKGENTRCPSIALMFQIGEDATYHNMGGCKKGTGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTPHCRYLDGMGPSERIQQLLKlqignatrmrfrnncs
Low Complexity Region (SEG)
KPglllllfvlsivsigWVNSHEESVLAKFKLGLITLDGHADDWEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKGENTRCPSIALMFQIGEDATYHNMGGCKKGTGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTPHCRYLDGMGPSERIQQLLKLQIGNATRMRFRNNCS
Disordered region (IsUnstruct)
***LLLLLFVLSIVSIGWVNSHEESVLAKFKLGLITLDGHADDWEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKGENTRCPSIALMFQIGEDATYHNMGGCKKGTGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPV******GGDRFGHLVDVYVWTPHCRYLDGMGPSERIQQLLKLQIGN***********
Disordered Region (DISOPRED)
*PGLLLLLFVLSIVSIGWVNSHEESVLAKFKLGLITLDGHADDWEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKGENTRCPSIALMFQIGEDATYHNMGGCKKGTGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTPHCRYLDGMGPSERIQQLLKLQIGNATRMRFRN***
Disordered Region (DISEMBL)
KPGLLLLLFVLSIVSIGWVNSHEESVLAKFKLGLITLDGHADDWEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKGENTRCPSIALMFQIGEDATYHNMGGCKKGTGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTPHCRYLDGMGPSERIQQLLKLQIGNATRMRFRNNCS
Disordered Region (DISPRO)
KPGLLLLLFVLSIVSIGWVNSHEESVLAKFKLGLITLDGHADDWEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKGENTRCPSIALMFQIGEDATYHNMGGCKKGTGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTPHCRYLDGMGPSERIQQLLKLQIGNATRMRFR**C*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KPGLLLLLFVLSIVSIGWVNSHEESVLAKFKLGLITLDGHADDWEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKGENTRCPSIALMFQIGEDATYHNMGGCKKGTGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTPHCRYLDGMGPSERIQQLLKLQIGNATRMRFRNNCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
297817576	361	hypothetical protein ARALYDRAFT_907811 [	0.871	0.526	0.658	1e-74
255548411	364	conserved hypothetical protein [Ricinus	0.821	0.491	0.691	3e-74
15228739	361	heme binding protein [Arabidopsis thalia	0.788	0.476	0.738	3e-74
224128266	362	predicted protein [Populus trichocarpa]	0.821	0.494	0.691	8e-74
359487547	362	PREDICTED: uncharacterized protein LOC10	0.876	0.527	0.635	9e-73
147819855	362	hypothetical protein VITISV_023420 [Viti	0.876	0.527	0.630	2e-72
356499833	397	PREDICTED: uncharacterized protein LOC10	0.802	0.440	0.689	3e-72
356534742	365	PREDICTED: uncharacterized protein LOC10	0.802	0.479	0.679	3e-70
388510480	365	unknown [Medicago truncatula]	0.825	0.493	0.656	1e-69
357442211	365	hypothetical protein MTR_1g086810 [Medic	0.825	0.493	0.656	1e-69

>gi|297817576|ref|XP_002876671.1| hypothetical protein ARALYDRAFT_907811 [Arabidopsis lyrata subsp. lyrata] gi|297322509|gb|EFH52930.1| hypothetical protein ARALYDRAFT_907811 [Arabidopsis lyrata subsp. lyrata]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/202 (65%), Positives = 159/202 (78%), Gaps = 12/202 (5%)

Query: 5   LLLLFVLSIVSIGWVNSHEES------------VLAKFKLGLITLDGHADDWEDINGSEF 52
           LL++  L I +   V SH+ES            ++A F+ G+ITLDGH DDW+DI+GSEF
Sbjct: 4   LLVVAWLLIFTAETVVSHQESGEWSCESDSEIQIIADFRPGIITLDGHNDDWKDIDGSEF 63

Query: 53  SLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKGENTRCPSIALMFQIG 112
            L PALD  A+HEY + KM VKALHDG D+YF+L++DG YAY KGEN +CPS+ALMFQIG
Sbjct: 64  PLRPALDPDADHEYDAGKMTVKALHDGRDIYFMLEIDGNYAYDKGENNKCPSVALMFQIG 123

Query: 113 EDATYHNMGGCKKGTGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDRF 172
           + ATYHNMGGCK+GT SCTSK C+G EVDIM+FSI +AIPGRLY GNP+DN EGNGGDRF
Sbjct: 124 DQATYHNMGGCKEGTDSCTSKACRGFEVDIMHFSIGNAIPGRLYGGNPIDNREGNGGDRF 183

Query: 173 GHLVDVYVWTPHCRYLDGMGPS 194
           GHLVD+Y W PHCRYLDG+GPS
Sbjct: 184 GHLVDIYAWNPHCRYLDGLGPS 205

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548411|ref|XP_002515262.1| conserved hypothetical protein [Ricinus communis] gi|223545742|gb|EEF47246.1| conserved hypothetical protein [Ricinus communis]

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 132/191 (69%), Positives = 156/191 (81%), Gaps = 12/191 (6%)

Query: 16  IGWVNSHEES------------VLAKFKLGLITLDGHADDWEDINGSEFSLLPALDLHAE 63
           IGW +SH+ES            + A+F+ GLITLDG+ADDW+DI+G EFSLLPALD   +
Sbjct: 18  IGWASSHQESGEWSCDSDSGIQLQAEFRPGLITLDGNADDWKDIDGFEFSLLPALDPDDD 77

Query: 64  HEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKGENTRCPSIALMFQIGEDATYHNMGGC 123
            EYK  KM VKALHDG DV+FLLQVDG+YAY+KG N +CPS+ALMFQIG+ ATYHNMGGC
Sbjct: 78  KEYKGGKMTVKALHDGKDVFFLLQVDGDYAYTKGTNNKCPSVALMFQIGDHATYHNMGGC 137

Query: 124 KKGTGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTP 183
            +G  +CTSKTCKGHEVDIM+FSI +AIPGRLY GNP+DN +GNGGDRFGHLVD+Y W P
Sbjct: 138 GEGPDACTSKTCKGHEVDIMHFSIGNAIPGRLYGGNPIDNRDGNGGDRFGHLVDLYAWNP 197

Query: 184 HCRYLDGMGPS 194
           HCRY+DG+GPS
Sbjct: 198 HCRYIDGIGPS 208

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228739|ref|NP_191796.1| heme binding protein [Arabidopsis thaliana] gi|7340708|emb|CAB82951.1| putative protein [Arabidopsis thaliana] gi|19423876|gb|AAL87316.1| unknown protein [Arabidopsis thaliana] gi|22136956|gb|AAM91707.1| unknown protein [Arabidopsis thaliana] gi|332646823|gb|AEE80344.1| heme binding protein [Arabidopsis thaliana]

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 127/172 (73%), Positives = 147/172 (85%)

Query: 23  EESVLAKFKLGLITLDGHADDWEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDV 82
           E  VLA F+ G+ITLDGH DDW+DI+GSEF L PALD  ++HEY + KM VKALHDG D+
Sbjct: 34  EIQVLADFRPGIITLDGHNDDWKDIDGSEFPLRPALDPDSDHEYDAGKMTVKALHDGRDI 93

Query: 83  YFLLQVDGEYAYSKGENTRCPSIALMFQIGEDATYHNMGGCKKGTGSCTSKTCKGHEVDI 142
           YFLL++DG YAY KGEN +CPS+ALMFQIG+ ATYHNMGGCK+GT SCTSK C+G EVDI
Sbjct: 94  YFLLEIDGNYAYDKGENNKCPSVALMFQIGDQATYHNMGGCKEGTDSCTSKACRGFEVDI 153

Query: 143 MYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTPHCRYLDGMGPS 194
           M+FSI +AIPGRLY GNP+DN EGNGGDRFGHLVD+Y W PHCRYLDG+GPS
Sbjct: 154 MHFSIGNAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWNPHCRYLDGLGPS 205

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128266|ref|XP_002320284.1| predicted protein [Populus trichocarpa] gi|222861057|gb|EEE98599.1| predicted protein [Populus trichocarpa]

 Score =  282 bits (721), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 132/191 (69%), Positives = 155/191 (81%), Gaps = 12/191 (6%)

Query: 16  IGWVNSHEES------------VLAKFKLGLITLDGHADDWEDINGSEFSLLPALDLHAE 63
           IGWVNSH+ES            + A+FK G ITLDGHADDW+DI+G + SLLPALD   +
Sbjct: 17  IGWVNSHQESGEWSCESDEEIRIEAEFKPGFITLDGHADDWKDIDGLDSSLLPALDPDDD 76

Query: 64  HEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKGENTRCPSIALMFQIGEDATYHNMGGC 123
            +Y   KM VKALHDG+D++FLLQVDG YAY+KG+N +CPS+ALMF IG++ATYHNMGGC
Sbjct: 77  KKYTGGKMTVKALHDGNDMFFLLQVDGNYAYTKGDNKKCPSVALMFPIGDEATYHNMGGC 136

Query: 124 KKGTGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTP 183
           K+GTG+C  KTCKGHEVDIM+FSI +AIPGRLY GNP+DN EGNGGDRFGHLVD+Y W P
Sbjct: 137 KEGTGTCNRKTCKGHEVDIMHFSIGNAIPGRLYGGNPLDNGEGNGGDRFGHLVDLYSWNP 196

Query: 184 HCRYLDGMGPS 194
           HCRYLDG GPS
Sbjct: 197 HCRYLDGTGPS 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487547|ref|XP_002277687.2| PREDICTED: uncharacterized protein LOC100244357 [Vitis vinifera] gi|296089782|emb|CBI39601.3| unnamed protein product [Vitis vinifera]

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 129/203 (63%), Positives = 158/203 (77%), Gaps = 12/203 (5%)

Query: 4   LLLLLFVLSIVSIGWVNSHEES------------VLAKFKLGLITLDGHADDWEDINGSE 51
           ++ L+ +L        NSH+ES            + A++K GL+TLDGHADDW D++G E
Sbjct: 6   VVPLILILGSTQTHLANSHQESGEWSCEPDLETRIHAEYKPGLVTLDGHADDWSDVDGLE 65

Query: 52  FSLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKGENTRCPSIALMFQI 111
            SLLPALD   +H+YK  KM VKALHDG D++F+LQVDG+YAYSKG N +CPS+ALMFQI
Sbjct: 66  LSLLPALDPDEDHQYKGGKMTVKALHDGKDIFFMLQVDGDYAYSKGNNNKCPSVALMFQI 125

Query: 112 GEDATYHNMGGCKKGTGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDR 171
           GE+ATYHNMGGCK+    CTSKTC+G+EVDIM+FSI +AIPGRLY GNP+DN EGNGGDR
Sbjct: 126 GENATYHNMGGCKEEPDKCTSKTCRGNEVDIMHFSIGNAIPGRLYGGNPIDNGEGNGGDR 185

Query: 172 FGHLVDVYVWTPHCRYLDGMGPS 194
           FGHLVD+Y W PHCR+LDG+GPS
Sbjct: 186 FGHLVDLYAWNPHCRHLDGLGPS 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819855|emb|CAN71815.1| hypothetical protein VITISV_023420 [Vitis vinifera]

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 128/203 (63%), Positives = 158/203 (77%), Gaps = 12/203 (5%)

Query: 4   LLLLLFVLSIVSIGWVNSHEES------------VLAKFKLGLITLDGHADDWEDINGSE 51
           ++ L+ +L        NSH+ES            + A++K GL+TLDGHADDW D++G +
Sbjct: 6   VVPLILILGSTQTHLANSHQESGEWSCEPDLETRIHAEYKPGLVTLDGHADDWSDVDGLD 65

Query: 52  FSLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKGENTRCPSIALMFQI 111
            SLLPALD   +H+YK  KM VKALHDG D++F+LQVDG+YAYSKG N +CPS+ALMFQI
Sbjct: 66  LSLLPALDPDEDHQYKGGKMTVKALHDGKDIFFMLQVDGDYAYSKGNNNKCPSVALMFQI 125

Query: 112 GEDATYHNMGGCKKGTGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDR 171
           GE+ATYHNMGGCK+    CTSKTC+G+EVDIM+FSI +AIPGRLY GNP+DN EGNGGDR
Sbjct: 126 GENATYHNMGGCKEEPDKCTSKTCRGNEVDIMHFSIGNAIPGRLYGGNPIDNGEGNGGDR 185

Query: 172 FGHLVDVYVWTPHCRYLDGMGPS 194
           FGHLVD+Y W PHCR+LDG+GPS
Sbjct: 186 FGHLVDLYAWNPHCRHLDGLGPS 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499833|ref|XP_003518741.1| PREDICTED: uncharacterized protein LOC100786799 [Glycine max]

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 129/187 (68%), Positives = 154/187 (82%), Gaps = 12/187 (6%)

Query: 19  VNSHEES------------VLAKFKLGLITLDGHADDWEDINGSEFSLLPALDLHAEHEY 66
           V SHEES            V  +FK G+ITLDGHADDW+DI+GS F LLPALD  AE+E+
Sbjct: 49  VESHEESGHWSCESESEIRVETEFKPGVITLDGHADDWKDIDGSYFPLLPALDPDAENEF 108

Query: 67  KSEKMNVKALHDGHDVYFLLQVDGEYAYSKGENTRCPSIALMFQIGEDATYHNMGGCKKG 126
           K  KM+VK++HDG D++FLLQVDG+YAYSKGE+ +CPS+ALMFQIG+ A+YH+MGGCK+ 
Sbjct: 109 KGGKMSVKSVHDGRDIFFLLQVDGDYAYSKGESNKCPSVALMFQIGDSASYHDMGGCKEH 168

Query: 127 TGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTPHCR 186
           + SCT KTCKGHEVDIM+FSI SAIPGRLY GNP+DN +GNGGDRFGHLVD+Y W PHCR
Sbjct: 169 STSCTDKTCKGHEVDIMHFSIGSAIPGRLYGGNPLDNRDGNGGDRFGHLVDLYAWNPHCR 228

Query: 187 YLDGMGP 193
           YLDG+GP
Sbjct: 229 YLDGIGP 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534742|ref|XP_003535911.1| PREDICTED: uncharacterized protein LOC100798285 [Glycine max]

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 127/187 (67%), Positives = 151/187 (80%), Gaps = 12/187 (6%)

Query: 19  VNSHEES------------VLAKFKLGLITLDGHADDWEDINGSEFSLLPALDLHAEHEY 66
           V SHEES            V A+FK G+ITLDGH DDW+DI+GS F LLPALD  AE+E+
Sbjct: 17  VESHEESGHWSCESESEIRVEAEFKYGVITLDGHTDDWKDIDGSYFPLLPALDPDAENEF 76

Query: 67  KSEKMNVKALHDGHDVYFLLQVDGEYAYSKGENTRCPSIALMFQIGEDATYHNMGGCKKG 126
           K  K+ VK++HDG D++FLLQVDG+YAYSKGE+ +CPS+ALMFQIG+ A+YHNMGGC++ 
Sbjct: 77  KGGKITVKSVHDGRDIFFLLQVDGDYAYSKGESNKCPSVALMFQIGDGASYHNMGGCEEH 136

Query: 127 TGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTPHCR 186
             SCT K+CKGHEVDIM+FSI SAIPGRLY GNP+DN  GNGGDRFGHLVD+Y W PHCR
Sbjct: 137 PTSCTDKSCKGHEVDIMHFSIGSAIPGRLYGGNPLDNRYGNGGDRFGHLVDLYAWNPHCR 196

Query: 187 YLDGMGP 193
           YLDG+GP
Sbjct: 197 YLDGIGP 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510480|gb|AFK43306.1| unknown [Medicago truncatula]

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 126/192 (65%), Positives = 154/192 (80%), Gaps = 12/192 (6%)

Query: 19  VNSHEES------------VLAKFKLGLITLDGHADDWEDINGSEFSLLPALDLHAEHEY 66
           V SHEES            V ++F+ G+ITLDGHADDW+DI+GS FSLL ALD  AE+E+
Sbjct: 19  VYSHEESGPWSCETGSEIHVESEFQPGVITLDGHADDWKDIDGSHFSLLLALDPDAENEF 78

Query: 67  KSEKMNVKALHDGHDVYFLLQVDGEYAYSKGENTRCPSIALMFQIGEDATYHNMGGCKKG 126
              KM VK++HDG D++FLLQVDG+YAYS GE+ +CPS+ALMFQIG+ A+YHNMGGC++ 
Sbjct: 79  NGGKMTVKSVHDGRDIFFLLQVDGDYAYSNGESKKCPSVALMFQIGDGASYHNMGGCEEH 138

Query: 127 TGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTPHCR 186
           + SCT+KTCKGHEVDIM+FSI +AIPGRLY GNP+DN +GNGGDRFGHLVD+Y W PHCR
Sbjct: 139 STSCTNKTCKGHEVDIMHFSIGNAIPGRLYGGNPIDNRDGNGGDRFGHLVDLYAWNPHCR 198

Query: 187 YLDGMGPSERIQ 198
           YLDG GPS  + 
Sbjct: 199 YLDGTGPSGSVN 210

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442211|ref|XP_003591383.1| hypothetical protein MTR_1g086810 [Medicago truncatula] gi|355480431|gb|AES61634.1| hypothetical protein MTR_1g086810 [Medicago truncatula]

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 126/192 (65%), Positives = 154/192 (80%), Gaps = 12/192 (6%)

Query: 19  VNSHEES------------VLAKFKLGLITLDGHADDWEDINGSEFSLLPALDLHAEHEY 66
           V SHEES            V ++F+ G+ITLDGHADDW+DI+GS FSLL ALD  AE+E+
Sbjct: 19  VYSHEESGPWSCETGSEIHVESEFQPGVITLDGHADDWKDIDGSHFSLLLALDPDAENEF 78

Query: 67  KSEKMNVKALHDGHDVYFLLQVDGEYAYSKGENTRCPSIALMFQIGEDATYHNMGGCKKG 126
              KM VK++HDG D++FLLQVDG+YAYS GE+ +CPS+ALMFQIG+ A+YHNMGGC++ 
Sbjct: 79  NGGKMTVKSVHDGRDIFFLLQVDGDYAYSNGESKKCPSVALMFQIGDGASYHNMGGCEEH 138

Query: 127 TGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTPHCR 186
           + SCT+KTCKGHEVDIM+FSI +AIPGRLY GNP+DN +GNGGDRFGHLVD+Y W PHCR
Sbjct: 139 STSCTNKTCKGHEVDIMHFSIGNAIPGRLYGGNPIDNRDGNGGDRFGHLVDLYAWNPHCR 198

Query: 187 YLDGMGPSERIQ 198
           YLDG GPS  + 
Sbjct: 199 YLDGTGPSGSVN 210

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
TAIR|locus:2096064	361	AT3G62370 [Arabidopsis thalian	0.788	0.476	0.738	5.9e-73

TAIR|locus:2096064 AT3G62370 [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 127/172 (73%), Positives = 147/172 (85%)

Query:    23 EESVLAKFKLGLITLDGHADDWEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDV 82
             E  VLA F+ G+ITLDGH DDW+DI+GSEF L PALD  ++HEY + KM VKALHDG D+
Sbjct:    34 EIQVLADFRPGIITLDGHNDDWKDIDGSEFPLRPALDPDSDHEYDAGKMTVKALHDGRDI 93

Query:    83 YFLLQVDGEYAYSKGENTRCPSIALMFQIGEDATYHNMGGCKKGTGSCTSKTCKGHEVDI 142
             YFLL++DG YAY KGEN +CPS+ALMFQIG+ ATYHNMGGCK+GT SCTSK C+G EVDI
Sbjct:    94 YFLLEIDGNYAYDKGENNKCPSVALMFQIGDQATYHNMGGCKEGTDSCTSKACRGFEVDI 153

Query:   143 MYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTPHCRYLDGMGPS 194
             M+FSI +AIPGRLY GNP+DN EGNGGDRFGHLVD+Y W PHCRYLDG+GPS
Sbjct:   154 MHFSIGNAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWNPHCRYLDGLGPS 205


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.137   0.431    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      218       203   0.00092  111 3  11 22  0.38    33
                                                     31  0.46    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  193 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.62u 0.12s 16.74t   Elapsed:  00:00:00
  Total cpu time:  16.62u 0.12s 16.74t   Elapsed:  00:00:00
  Start:  Sat May 11 14:18:32 2013   End:  Sat May 11 14:18:32 2013

GO:0020037 "heme binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_503515.1 annotation not avaliable (361 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	218
pfam09459	180	pfam09459, EB_dh, Ethylbenzene dehydrogenase	2e-18
smart00887	209	smart00887, EB_dh, Ethylbenzene dehydrogenase	1e-14
cd00241	158	cd00241, DOMON_like, Domon-like ligand-binding dom	2e-05

>gnl|CDD|220250 pfam09459, EB_dh, Ethylbenzene dehydrogenase

 Score = 79.0 bits (195), Expect = 2e-18
 Identities = 33/146 (22%), Positives = 49/146 (33%), Gaps = 30/146 (20%)

Query: 41  ADDWEDINGSEFSLLPALDLHAEHEYKSEKMN--VKALHDGHDVYFLLQVDGE---YAYS 95
           A DW      E  L P  +++ E + K       VKA +DG ++YF L            
Sbjct: 1   APDWSKAPPVEIPLYPGPNVYPEPDPKGATKPVTVKAAYDGENIYFRLSWKDPTRSLEKQ 60

Query: 96  KGENTRCPSIALMFQIGEDATYHNMGGCKKGTGSCTSKTCKGHEVDIMYFSIESAIPGRL 155
             ++     +A+MF  G+       G       SC              F   +A  GR 
Sbjct: 61  GEDDYYEDKVAVMFPDGKVTPAAGAGCW----LSC---------HKDARFPAGAAGRGRK 107

Query: 156 YDGNPVDNSEGNGGDRFGHLVDVYVW 181
           Y G+             G  VD++ W
Sbjct: 108 YMGDS------------GQPVDLWHW 121

Eythylbenzene dehydrogenase is a heterotrimer of three subunits that catalyzes the anaerobic degradation of hydrocarbons. The alpha subunit contains the catalytic centre as a Molybdenum cofactor-complex. This removes an electron-pair from the hydrocarbon and passes it along an electron transport system involving iron-sulphur complexes held in the beta subunit and a Haem b molecule contained in the gamma subunit. The electron-pair is then subsequently passed to an as yet unknown receiver. The enzyme is found in a variety of different bacteria. Length = 180

>gnl|CDD|214885 smart00887, EB_dh, Ethylbenzene dehydrogenase

 Score = 69.5 bits (170), Expect = 1e-14
 Identities = 22/156 (14%), Positives = 35/156 (22%), Gaps = 6/156 (3%)

Query: 41  ADDWEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKGENT 100
           A DW     SE  L        E     +     AL    D         +YA   G   
Sbjct: 1   APDWSKAPPSEIPLFYPGQSAVEWVLVKDDHGGYALFKWGDACASCHKVPDYAADDGWKM 60

Query: 101 RCPS-IALMFQIGEDATYHNMGGCKKGTGSCTSKTCKGHEVDIMYFSIES-AIPGRLYDG 158
                +  +F   + A   N+            +            S       G +   
Sbjct: 61  LAGGKLEPLFWEDKTADVPNIVQIAYDADGLAVRFPLKAPGLPATASAGDMWHMGAVRGP 120

Query: 159 NPVDNSEGNGGDRFGHLVDVYVWTPHCRYLDGMGPS 194
             +   +     + G  V+   W         M  +
Sbjct: 121 VAIMLDD----GKVGEAVNAGYWGGCHGDARTMAGA 152

Eythylbenzene dehydrogenase is a heterotrimer of three subunits that catalyses the anaerobic degradation of hydrocarbons. The alpha subunit contains the catalytic centre as a Molybdenum cofactor-complex. This removes an electron-pair from the hydrocarbon and passes it along an electron transport system involving iron-sulphur complexes held in the beta subunit and a Haem b molecule contained in the gamma subunit. The electron-pair is then subsequently passed to an as yet unknown receiver. The enzyme is found in a variety of different bacteria. Length = 209

>gnl|CDD|187675 cd00241, DOMON_like, Domon-like ligand-binding domains

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 3/73 (4%)

Query: 53  SLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSK---GENTRCPSIALMF 109
           +L                  VK   DG  +YFL++V  +                + L F
Sbjct: 2   ALDIDPSGLGGGGPGDLSATVKLAWDGEYLYFLVEVTDDVLRDTAALSLVWDGDGVELFF 61

Query: 110 QIGEDATYHNMGG 122
               D T  N  G
Sbjct: 62  DPDNDGTDGNAFG 74

DOMON-like domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases. Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
PF09459	261	EB_dh: Ethylbenzene dehydrogenase; InterPro: IPR01	99.72
TIGR03477	205	DMSO_red_II_gam DMSO reductase family type II enzy	98.38
PF06452	185	DUF1083: Domain of unknown function (DUF1083); Int	95.34
cd00005	186	CBM9 Family 9 carbohydrate-binding module (CBM), p	94.84
TIGR03785	703	marine_sort_HK proteobacterial dedicated sortase s	84.97

>PF09459 EB_dh: Ethylbenzene dehydrogenase; InterPro: IPR019020 This entry represents a haem-binding domain found in cytochromes b558/566 (subunit A), c-551 and c-552, as well as in members of the type-II members of the microbial dimethyl sulphoxide (DMSO) reductase family

Probab=99.72  E-value=1.2e-18  Score=148.03  Aligned_cols=127  Identities=30%  Similarity=0.509  Sum_probs=60.4

Q ss_pred             CCcccccCcccccccccCCC--cCCcCCCCceEEEEeecCccEEEEEEecC---cee------ec--cCCcccCCceeee
Q 043015           42 DDWEDINGSEFSLLPALDLH--AEHEYKSEKMNVKALHDGHDVYFLLQVDG---EYA------YS--KGENTRCPSIALM  108 (218)
Q Consensus        42 ~DW~~i~g~efsL~pALdpd--~d~~Y~~Gkm~VKa~HDG~dvfFLLqV~G---~Y~------y~--~gen~~CpsvaLM  108 (218)
                      .+|++|+..+++|.|.+++.  +..++...+|+|||+|||++||||||.+.   ++.      |.  +....-+..+|+|
T Consensus         2 ~~W~~~p~~~v~L~pg~~~~p~~~~~~~~~~v~VkAa~dg~~Iyfll~W~d~t~~~~~~p~~~~~~~~~~~~yeDk~Avm   81 (261)
T PF09459_consen    2 PDWSKAPPVEVPLYPGQSSYPEPPPKGGTIPVEVKAAHDGENIYFLLEWPDPTRSYERHPDGGWVQAGEDDYYEDKVAVM   81 (261)
T ss_dssp             HHHHTS-EEEEE-EE--GGG----T-----EEEEEEEE-SSEEEEEEEEE-----S------------STT----EEEEE
T ss_pred             chhccCCCeEEEECCCccCCccccCCCCcEEEEEEEEECCCeEEEEEEecCCCCCccccccccccccCCCCcCcceEEEE
Confidence            58999999999999997644  44588889999999999999999999998   233      22  3567788999999


Q ss_pred             eeecCCceeeecCCCCCCCCCccccccCCeeeeEEEEEecccccccccCCCCCCCCCCCCCCccccceeeeecCC-----
Q 043015          109 FQIGEDATYHNMGGCKKGTGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTP-----  183 (218)
Q Consensus       109 FqiGd~AtyhNMGGC~e~~~sCt~ksC~ghEVDImHFsi~~AiPGRlYG~N~~Dn~~G~G~DrfGhLvD~YaWnP-----  183 (218)
                      |.+| ++.++.+.        |+..+|...+.|+.++.+++   ||.|-+..            |+++|++.|++     
T Consensus        82 f~~g-~v~~~~~~--------Gc~~~ch~~~~~~p~~~~~~---~~ky~~~~------------g~~vdlW~Wka~r~~~  137 (261)
T PF09459_consen   82 FSDG-DVPYFGQD--------GCWHTCHKPLRDMPAAPIGR---GRKYMGDS------------GEPVDLWHWKASRSGM  137 (261)
T ss_dssp             E----------------------------ESST--T--GG-------GT-BT------------TB-EEEEEEET-----
T ss_pred             eeec-cccccccc--------cccccccCCcccccCCCccc---ceeeeCCC------------CeEEEEEEeccccccc
Confidence            9999 88888555        45678999999999998887   88888774            99999999999     


Q ss_pred             --------cccccCCCC
Q 043015          184 --------HCRYLDGMG  192 (218)
Q Consensus       184 --------HCRylDG~g  192 (218)
                              +|||.+|.|
T Consensus       138 ~~d~~~~~~r~~~~G~g  154 (261)
T PF09459_consen  138 ADDGYVFGKRRYDAGYG  154 (261)
T ss_dssp             -----------------
T ss_pred             ccccccccccccccccc
Confidence                    899999998

The DMSO reductase family is a large and rapidly expanding group of enzymes found in bacteria and archaea that share a common form of molybdenum cofactor known as bis(molybdopterin guanine dinucleotide)Mo []. In addition to the molybdopterin subunit, these enzymes also contain an iron-sulphur subunit. These include two distinct but very closely related periplasmic proteins of anaerobic respiration: selenate reductase and chlorate reductase []. Other proteins containing this subunit include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase [, , ]. One member of the DMSO reductase family is eythylbenzene dehydrogenase, which is a heterotrimer of three subunits that catalyses the anaerobic degradation of hydrocarbons (alpha, beta and gamma subunits). This entry matches the gamma subunit, whose structure is known []. The alpha subunit contains the catalytic centre as a Molybdenum cofactor-complex. This removes an electron-pair from the hydrocarbon and passes it along an electron transport system involving iron-sulphur complexes held in the beta subunit and a Haem b molecule contained in the gamma subunit. The electron-pair is then subsequently passed to an as yet unknown receiver. The enzyme is found in a variety of different bacteria.; GO: 0020037 heme binding; PDB: 2IVF_C.

>TIGR03477 DMSO_red_II_gam DMSO reductase family type II enzyme, heme b subunit

Probab=98.38  E-value=1.7e-06  Score=74.02  Aligned_cols=104  Identities=20%  Similarity=0.335  Sum_probs=77.4

Q ss_pred             cceEeecCCCCCcccccCcccccccccCCCcCCcCCCC--ceEEEEeecCccEEEEEEecCceeeccCC--cccCCceee
Q 043015           32 LGLITLDGHADDWEDINGSEFSLLPALDLHAEHEYKSE--KMNVKALHDGHDVYFLLQVDGEYAYSKGE--NTRCPSIAL  107 (218)
Q Consensus        32 PG~iTlDG~~~DW~~i~g~efsL~pALdpd~d~~Y~~G--km~VKa~HDG~dvfFLLqV~G~Y~y~~ge--n~~CpsvaL  107 (218)
                      -|.+.+|-.+.-|++++..+.+|.|+---.+...|++-  +|.|||+||++.|||+|+=+-+=+=....  +.-=-.||+
T Consensus         8 ~g~~~~dp~d~vW~~ap~~~V~l~~q~~~~pn~~~~~~~~~v~VkA~~n~~~Iyf~l~W~D~T~d~~~~~~d~F~DgvAv   87 (205)
T TIGR03477         8 GGDLPLDPDAPVWAGAPATEVPMVSAPLVHPFLADTGVIKTLDVQAARNGERLAVRLKWADETHDVNTDGTDSFVDGVAV   87 (205)
T ss_pred             CCCCCCCcchhHHhcCCcEEEEeccccccccCccCCCcceEEEEEEEECCCeEEEEEEECCCCCccccccccccCcceEE
Confidence            36888999999999999999999777654333334333  79999999999999999876543211111  112246999


Q ss_pred             eeeecCCc-eeeecCCCCCCCCCccccccCCeeeeEEEEEec
Q 043015          108 MFQIGEDA-TYHNMGGCKKGTGSCTSKTCKGHEVDIMYFSIE  148 (218)
Q Consensus       108 MFqiGd~A-tyhNMGGC~e~~~sCt~ksC~ghEVDImHFsi~  148 (218)
                      +|++..+. .|.-||+             .+|.|.|-||+-.
T Consensus        88 qFP~~~~~~p~i~MG~-------------~~~pVniw~W~a~  116 (205)
T TIGR03477        88 QFPVSRGSLPYITMGA-------------ADNPVNIWYWKAD  116 (205)
T ss_pred             EcccCCCccCceecCC-------------CCCceEEEEECCC
Confidence            99999877 7888886             4789999999764

This model represents a heme b-binding subunit, typically called the gamma subunit, of various proteins that also contain a molybdopterin subunit and an iron-sulfur protein. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.

>PF06452 DUF1083: Domain of unknown function (DUF1083); InterPro: IPR010502 This entry represents the family 9 carbohydrate-binding module (CBD9), which exhibit an immunoglobulin-like beta-sandwich fold, with an additional beta-strand at the N terminus []

Probab=95.34  E-value=0.023  Score=43.50  Aligned_cols=53  Identities=19%  Similarity=0.377  Sum_probs=34.4

Q ss_pred             ecCCCC-CcccccCcccccccccCCCcCCcCCCCceEEEEeecCccEEEEEEecCce
Q 043015           37 LDGHAD-DWEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVDGEY   92 (218)
Q Consensus        37 lDG~~~-DW~~i~g~efsL~pALdpd~d~~Y~~Gkm~VKa~HDG~dvfFLLqV~G~Y   92 (218)
                      |||..+ .|+..+  .+.+.....+..... +.-+.+||+++|.+.+||+++|--+.
T Consensus         1 IDG~~d~~W~~a~--~~~~~~~~~~~~~~~-~~~s~~~~~~wD~~~LY~~~~v~D~~   54 (185)
T PF06452_consen    1 IDGKLDAEWKGAP--PITIFYQWWGSDWSG-EDLSTRVRLLWDDENLYFAFEVTDDT   54 (185)
T ss_dssp             SSSS--GGGGGS---EEE--EEEES-T--T-TS-EEEEEEEE-SSEEEEEEEEE-SS
T ss_pred             CCCcccchhcCCc--eEeeeeeecccccCC-CCccEEEEEEEeCCeEEEEEEEECCc
Confidence            699992 499998  455556666554444 67789999999999999999998777

Bacterial extracellular cellulases and hemicellulases are involved in the hydrolysis of the major structural polysaccharides of plant cell walls. These are usually modular enzymes that contain catalytic and non-catalytic domains. The CBD9 domain binds to cellulose, xylan, as well as to a range of soluble di- and mono-saccharides, and is found in cellulose- and xylan-degrading enzymes, such as endo-1,4-beta-xylanase (3.2.1.8 from EC) [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0016052 carbohydrate catabolic process; PDB: 1I82_A 1I8A_A 1I8U_A.

>cd00005 CBM9 Family 9 carbohydrate-binding module (CBM), plays a role in microbial degradation of cellulose and hemicellulose found in plants; previously called cellulose-binding domain; the binding sites of the CBMs for which structures have been determined are of two general types: flat surfaces comprising predominantly aromatic residues tryptophan and tyrosine and extended shallow grooves; this domain frequently occurs in tandem

Probab=94.84  E-value=0.047  Score=44.45  Aligned_cols=54  Identities=28%  Similarity=0.461  Sum_probs=39.6

Q ss_pred             eeecceEeecCCCCC-cccccCcccccccccCCCcCCcCCCCceEEEEeecCccEEEEEEec
Q 043015           29 KFKLGLITLDGHADD-WEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVD   89 (218)
Q Consensus        29 ef~PG~iTlDG~~~D-W~~i~g~efsL~pALdpd~d~~Y~~Gkm~VKa~HDG~dvfFLLqV~   89 (218)
                      .=..|.|+|||..++ |+..+...-  +....|.     ++-+-+||+++|...+|++.+|-
T Consensus         4 ~~~~~~p~IDG~~de~W~~a~~~~~--~~~~~~~-----~~~~t~~k~lwDd~~LYv~~~v~   58 (186)
T cd00005           4 KAKYGTPVIDGQVDDIWKKAKPLET--NTYVEGT-----SGATATVRVLWDEKNLYVLAEVK   58 (186)
T ss_pred             eeccCCCeecCccchhHhhCcceee--eeEecCC-----CCcceEEEEEEcCCcEEEEEEEE
Confidence            345678999999999 998765432  1122331     44578999999999999999964

>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase

Probab=84.97  E-value=1.4  Score=42.41  Aligned_cols=61  Identities=26%  Similarity=0.359  Sum_probs=47.0

Q ss_pred             eeeeeecceEeecCCCCCcccccCcccccccccCCCcCCcCCCCceEEEEeec----CccEEEEEEecCc
Q 043015           26 VLAKFKLGLITLDGHADDWEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHD----GHDVYFLLQVDGE   91 (218)
Q Consensus        26 v~Aef~PG~iTlDG~~~DW~~i~g~efsL~pALdpd~d~~Y~~Gkm~VKa~HD----G~dvfFLLqV~G~   91 (218)
                      +-|-=.+|-|.|||..+||..... .|..+|.+-    ...+..-..+++.|.    +..+|.++||..+
T Consensus        72 ~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~  136 (703)
T TIGR03785        72 LYAYPLDTAIYLDGYLDDWPEYQH-RFQQYGQLQ----TAGKPKPLSLSFTHMVGKYDQYLYLLFQVTDN  136 (703)
T ss_pred             eeeccCCCCeecCCcccccccccc-hhhhchhhh----hcCCCCCcceEEEEeccccCceEEEEEEEcCC
Confidence            666667899999999999999887 566776421    112223577899999    9999999999876

This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
2ivf_C	214	Ethylbenzene dehydrogenase gamma-subunit; anaerobi	2e-18

>2ivf_C Ethylbenzene dehydrogenase gamma-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum} Length = 214

 Score = 79.1 bits (194), Expect = 2e-18
 Identities = 22/142 (15%), Positives = 43/142 (30%), Gaps = 24/142 (16%)

Query: 35  ITLDGHADDWEDINGSEFSLLPALDLHAEHEY----------KSEKMNVKALHDGHDVYF 84
           + LD  A  W     + F + P   +  +               ++++V ALH+G  +  
Sbjct: 12  LLLDLDAPIWAGAESTTFEMFPTPLVMVKEVSPFLALSEGHGVIKRLDVAALHNGSMIAL 71

Query: 85  LLQ-VDGEYAYSKGENTRCPSIALMFQIGEDATYHNMGGCKKGTGSCTSKTCKGHEVDIM 143
            L+    ++      N+    +  MF +   A    MG               G  V+  
Sbjct: 72  RLKWASEKHDKIVDLNSFVDGVGAMFPVARGAQAVTMGA-------------TGRPVNAW 118

Query: 144 YFSIESAIPGRLYDGNPVDNSE 165
           Y+   +  P  +          
Sbjct: 119 YWKANANEPMEIVAEGFSAVRR 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	218
2ivf_C	214	Ethylbenzene dehydrogenase gamma-subunit; anaerobi	99.88
1i82_A	189	Xylanase A, endo-1,4-beta-xylanase A; cellobiose c	96.98

>2ivf_C Ethylbenzene dehydrogenase gamma-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}

Probab=99.88  E-value=1.1e-23  Score=176.76  Aligned_cols=119  Identities=22%  Similarity=0.357  Sum_probs=106.9

Q ss_pred             eEeecCCCCCcccccCcccccccc-----cCCCc-----CCcCCCCceEEEEeecCccEEEEEEecCceeeccCC-cccC
Q 043015           34 LITLDGHADDWEDINGSEFSLLPA-----LDLHA-----EHEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKGE-NTRC  102 (218)
Q Consensus        34 ~iTlDG~~~DW~~i~g~efsL~pA-----Ldpd~-----d~~Y~~Gkm~VKa~HDG~dvfFLLqV~G~Y~y~~ge-n~~C  102 (218)
                      .|++|+++..|++++..+++|.|+     +|+++     ..++...+|+|||+|||++|||+|+.+.+++++..+ ...|
T Consensus        11 ~~~~d~~~~~W~~ap~~~v~L~~~~~~~p~~~~~~~~~~~~~~~~~~v~VkAa~dg~~i~f~l~W~D~t~~~~~~~~~f~   90 (214)
T 2ivf_C           11 ELLLDLDAPIWAGAESTTFEMFPTPLVMVKEVSPFLALSEGHGVIKRLDVAALHNGSMIALRLKWASEKHDKIVDLNSFV   90 (214)
T ss_dssp             HHHTCTTCHHHHTSCEEEEECEECCGGGGTTTCTTGGGCCSCCCCCEEEEEEEECSSEEEEEEEEECCCCCSCCSTTCCC
T ss_pred             cccCCCChHHHhcCCceEEEccCCccccccccccccccccCCCCceEEEEEEEECCCeEEEEEEECCCCCCccccccccC
Confidence            568899999999999999999999     78877     788999999999999999999999999999998777 7779


Q ss_pred             CceeeeeeecCCceeeecCCCCCCCCCccccccCCeeeeEEEEEecccccccccCCCCCCCCCCCCCCcccccee
Q 043015          103 PSIALMFQIGEDATYHNMGGCKKGTGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVD  177 (218)
Q Consensus       103 psvaLMFqiGd~AtyhNMGGC~e~~~sCt~ksC~ghEVDImHFsi~~AiPGRlYG~N~~Dn~~G~G~DrfGhLvD  177 (218)
                      ..||+||++|++++|+.||.             .|++|||+||+.+.         |.++|..++|   ||++.+
T Consensus        91 D~vAvmfp~~~~~~~~~MG~-------------~~~~vdiw~Wka~~---------~~~~~~~a~G---fgs~~~  140 (214)
T 2ivf_C           91 DGVGAMFPVARGAQAVTMGA-------------TGRPVNAWYWKANA---------NEPMEIVAEG---FSAVRR  140 (214)
T ss_dssp             CEEEEEEESSTTCCGGGTCB-------------TTBCEEEEEEETTC---------SSCEEEEESS---TTSEEE
T ss_pred             ceEEEEeEcCCCCcccccCC-------------CCcEEEEEEEecCC---------CcceeeccCC---cccccc
Confidence            99999999999999999994             67999999999875         3577777766   888877

>1i82_A Xylanase A, endo-1,4-beta-xylanase A; cellobiose complex, hydrolase; HET: BGC; 1.90A {Thermotoga maritima} SCOP: b.1.9.2 PDB: 1i8a_A* 1i8u_A

Probab=96.98  E-value=0.001  Score=51.01  Aligned_cols=90  Identities=19%  Similarity=0.266  Sum_probs=56.3

Q ss_pred             eeeeecceEeecCCCCC-cccccCcccccccccCCCcCCcCCCCceEEEEeecCccEEEEEEecCceeeccC-CcccCCc
Q 043015           27 LAKFKLGLITLDGHADD-WEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKG-ENTRCPS  104 (218)
Q Consensus        27 ~Aef~PG~iTlDG~~~D-W~~i~g~efsL~pALdpd~d~~Y~~Gkm~VKa~HDG~dvfFLLqV~G~Y~y~~g-en~~Cps  104 (218)
                      .|....|.|+|||..+| |+..+........     .+...+.=+-+||++||...+|++++|--+.--... .--.--+
T Consensus         2 ~a~~~~~~~~IDG~ld~~W~~a~~~~~~~~~-----~g~~~~~~~t~~~~~~d~~~LYv~~~v~D~~~~~~~~~~~~~D~   76 (189)
T 1i82_A            2 VATAKYGTPVIDGEIDEIWNTTEEIETKAVA-----MGSLDKNATAKVRVLWDENYLYVLAIVKDPVLNKDNSNPWEQDS   76 (189)
T ss_dssp             EEEEEECCCCSSSSCCGGGGGSCEEECCEEE-----ESCTTTSCEEEEEEEECSSEEEEEEEEECSSCCCCSSSGGGSSE
T ss_pred             eeeeccCCceECCccchhhccCccEeeeeee-----cCCcCCCCcEEEEEEEcCCceEEEEEEECCCcccCCCCCccCCe
Confidence            46677899999999998 9987763321111     123234457899999999999999999766543211 1111234


Q ss_pred             eeeeeee-cCCceeeecC
Q 043015          105 IALMFQI-GEDATYHNMG  121 (218)
Q Consensus       105 vaLMFqi-Gd~AtyhNMG  121 (218)
                      |-+.+.- ++..+||+.+
T Consensus        77 veifid~~~~~~~~y~~~   94 (189)
T 1i82_A           77 VEIFIDENNHKTGYYEDD   94 (189)
T ss_dssp             EEEEEETTCCCCSSCCTT
T ss_pred             EEEEECCCCCCCcccccc
Confidence            5555443 3444566654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d1i8aa_	189	Xylanase 10A {Thermotoga maritima [TaxId: 2336]}	96.73

>d1i8aa_ b.1.9.2 (A:) Xylanase 10A {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: CBD9-like
family: Family 9 carbohydrate-binding module, CBD9
domain: Xylanase 10A
species: Thermotoga maritima [TaxId: 2336]

Probab=96.73  E-value=0.001  Score=48.83  Aligned_cols=78  Identities=18%  Similarity=0.251  Sum_probs=51.0

Q ss_pred             eeecceEeecCCCCC-cccccCcccccccccCCCcCCcCCCCceEEEEeecCccEEEEEEecCceeeccC-CcccCCcee
Q 043015           29 KFKLGLITLDGHADD-WEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKG-ENTRCPSIA  106 (218)
Q Consensus        29 ef~PG~iTlDG~~~D-W~~i~g~efsL~pALdpd~d~~Y~~Gkm~VKa~HDG~dvfFLLqV~G~Y~y~~g-en~~Cpsva  106 (218)
                      .=+=|.|||||..++ |+.++-..  +.-...+....   .-+-+||+++|.+.+||+++|--+.-.... .--..-+|.
T Consensus         4 ~~~~g~p~IDG~lde~W~~a~~~~--~~~~~~~~~~~---~~~t~v~~~~D~~~LYv~~~~~D~~~~~~~~~~~~~D~ve   78 (189)
T d1i8aa_           4 TAKYGTPVIDGEIDEIWNTTEEIE--TKAVAMGSLDK---NATAKVRVLWDENYLYVLAIVKDPVLNKDNSNPWEQDSVE   78 (189)
T ss_dssp             EEEECCCCSSSSCCGGGGGSCEEE--CCEEEESCTTT---SCEEEEEEEECSSEEEEEEEEECSSCCCCSSSGGGSSEEE
T ss_pred             ecccCCCEECccCChHHhcCcccc--cceeccCCCCC---CCcEEEEEEEecCeEEEEEEEEcCCcccccCCccCCCeEE
Confidence            334599999999999 99876543  33333333332   236799999999999999999765432211 111235677


Q ss_pred             eeeee
Q 043015          107 LMFQI  111 (218)
Q Consensus       107 LMFqi  111 (218)
                      ++|.-
T Consensus        79 i~id~   83 (189)
T d1i8aa_          79 IFIDE   83 (189)
T ss_dssp             EEEES
T ss_pred             EEEcC
Confidence            77754