Citrus Sinensis ID: 043020

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560----
MASFLFRTIQSHSFLLCPTTLLRRNNGAFYCSMKSTHTQTATQEKQQPPPKIKSSPQGNQAKTRTLDRISKEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPGLLNKILLEKLNAKS
cHHHHHHHHccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccHHHHccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccccEEcccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccc
ccHHHHHHcccccccccccHHHEHccccEEEEEEcccccccccccccccccccccccccccccccccHHcccEEEEEEEEEEEEEccccEEEcccccccccccccccccEEccccccHHHHHHHHHHHHHHHHHHHccccccccHcccccccccccccccEEEccccccccccEEEEEEEccccccEEEEEEEEEEEEcccccEEEccccccccccccccccccEEEcccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEccccccHcccEEEEccHcHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccEEEEEccccccccccccccccccEEEcHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHcccEEEccHHHHHHHHHHHHHHcHHHHHHHHcccccEEEEEHHHHHHHccccccHHHHHHHHHHHHcccc
MASFLFRTIqshsfllcpttllrrnngafycsmksthtqtatqekqqpppkiksspqgnqaktrTLDRISKEYEAIIGIETHVQLSTLTKafctcpynygaqpntsvcpicmglpgalpvvnSKVVEFAVKLGLALNcklsfnskfdrkqyfypdlpkgyqisqfdipiatggyldvdlpveyggghrrfgiTRVHMEEDagkllhaddgeysqeiTFPIIYALQVDlnragvplleivsepdmrtGLEAAEYAAELQRLVRYLGvsngnmqegslrcdvnvsirpvgqskfgtKVEIKNLNSFSSINRAIDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKkegladyryfpepdlpeviLNKEYVDSIQsslpelpemKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEkdlvqivdpsEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKiskgkanpgLLNKILLEKLNAKS
masflfrtiqshsfllCPTTLLRRNNGAFYCSMKSTHTQtatqekqqpppkiksspqgnqaktrTLDRISKEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRpvgqskfgtkveIKNLNSFSSINRAIDFEIARQALLYSQGKADQIVQetrlweegsqktvtmrkkegladyryfpEPDLPEVILNKEYVDsiqsslpelpeMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKiskgkanpgllnkilleklnaks
MASFLFRTIQSHSFLLCPTTLLRRNNGAFYCSMKSTHTQTATqekqqpppkiksspqGNQAKTRTLDRISKEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINeiklsaaelaeliasikGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPGLLNKILLEKLNAKS
***FLFRTIQSHSFLLCPTTLLRRNNGAFYCS************************************ISKEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQALLYSQGKADQIVQETRLWEE*****VT***KEGLADYRYFPEPDLPEVILNKEYVDS******************MGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMV*****************KTKLQGFFAGQVMKISKGKANPGLLNKILL*******
**SFLFRTIQSHSFLLCPTTLLRRNNGAFYCSM**********************************RISKEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPGLLNKILLEKLN***
MASFLFRTIQSHSFLLCPTTLLRRNNGAFYCSMK*******************************LDRISKEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPGLLNKILLEKLNAKS
*ASFLFRTIQSHSFLLCPTTLLRRNNGAFYCSMKST*******************************RISKEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHA*************IYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPGLLNKILLEKL****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASFLFRTIQSHSFLLCPTTLLRRNNGAFYCSMKSTHTQTATQEKQQPPPKIKSSPQGNQAKTRTLDRISKEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPGLLNKILLEKLNAKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query564 2.2.26 [Sep-21-2011]
B9SQR9549 Glutamyl-tRNA(Gln) amidot N/A no 0.973 1.0 0.817 0.0
Q9FV81550 Glutamyl-tRNA(Gln) amidot yes no 0.969 0.994 0.762 0.0
A2ZF53544 Glutamyl-tRNA(Gln) amidot N/A no 0.937 0.972 0.741 0.0
Q2R2Z0544 Glutamyl-tRNA(Gln) amidot yes no 0.936 0.970 0.738 0.0
C5Y3V8548 Glutamyl-tRNA(Gln) amidot N/A no 0.925 0.952 0.728 0.0
A9TWD9562 Glutamyl-tRNA(Gln) amidot N/A no 0.904 0.907 0.668 0.0
Q8DGC4500 Aspartyl/glutamyl-tRNA(As yes no 0.870 0.982 0.596 1e-170
B0BZQ6494 Aspartyl/glutamyl-tRNA(As yes no 0.852 0.973 0.588 1e-169
Q10XY9494 Aspartyl/glutamyl-tRNA(As yes no 0.858 0.979 0.578 1e-169
C1E9T6543 Glutamyl-tRNA(Gln) amidot yes no 0.902 0.937 0.568 1e-166
>sp|B9SQR9|GATB_RICCO Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Ricinus communis GN=GATB PE=3 SV=1 Back     alignment and function desciption
 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/564 (81%), Positives = 507/564 (89%), Gaps = 15/564 (2%)

Query: 1   MASFLFRTIQSHSFLLCPTTLLRRNNGAFYCSMKSTHTQTATQEKQQPPPKIKSSPQGNQ 60
           MAS LFR IQ+H  LL PT+  RR +  FYC++ ST + TATQEKQQ P +IK SPQ   
Sbjct: 1   MASTLFRNIQTHPLLLYPTSFFRRKSSVFYCTVNST-SPTATQEKQQCP-RIKVSPQ--- 55

Query: 61  AKTRTLDRISKEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPV 120
            ++++LD+++K+YE IIGIETHVQLSTLTKAFC+CPYNYGAQPN+++CP+CMGLPGALPV
Sbjct: 56  TQSKSLDKLTKDYETIIGIETHVQLSTLTKAFCSCPYNYGAQPNSTICPVCMGLPGALPV 115

Query: 121 VNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLP 180
           +NSKV+EFAVKLGLALNCKLS NSKFDRKQYFYPDLPKGYQISQFDIPIAT GY+D+DLP
Sbjct: 116 LNSKVIEFAVKLGLALNCKLSLNSKFDRKQYFYPDLPKGYQISQFDIPIATSGYVDLDLP 175

Query: 181 VEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVS 240
           VE+GGGHRRFGITRVHMEEDAGKLLH+  G          I    VDLNRAGVPLLEIVS
Sbjct: 176 VEFGGGHRRFGITRVHMEEDAGKLLHSGGG----------ISGAIVDLNRAGVPLLEIVS 225

Query: 241 EPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKN 300
           EPDMR G+EAAEYAAELQR+VRYLGVSNGNMQEGSLRCDVNVSIRP+GQS+FGTKVEIKN
Sbjct: 226 EPDMRNGIEAAEYAAELQRVVRYLGVSNGNMQEGSLRCDVNVSIRPIGQSEFGTKVEIKN 285

Query: 301 LNSFSSINRAIDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFP 360
           LNSFSSINRAIDFEI+RQ LL+SQG++D IVQETRLWEEG+QKTVTMRKKEGL+DYRYFP
Sbjct: 286 LNSFSSINRAIDFEISRQVLLHSQGQSDSIVQETRLWEEGAQKTVTMRKKEGLSDYRYFP 345

Query: 361 EPDLPEVILNKEYVDSIQSSLPELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIE 420
           EPDLPEV+L +EYVDSIQSSLPELPE KRRRYE MGLSMQDVLFLAND +VA FFDATI 
Sbjct: 346 EPDLPEVVLTEEYVDSIQSSLPELPETKRRRYENMGLSMQDVLFLANDTSVAEFFDATIA 405

Query: 421 KGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFE 480
           +GA VKLAANWIMGDIAAYMKNEK++INEIKL+  ELAELIASIKG  ISGKIGKEILFE
Sbjct: 406 QGAQVKLAANWIMGDIAAYMKNEKVSINEIKLTPKELAELIASIKGGIISGKIGKEILFE 465

Query: 481 LMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVM 540
           L+AKGGTVKG+I EKDLVQIVDP+EIEKMVDKVLSENPKQLEQYR GKTKLQGFFAGQVM
Sbjct: 466 LIAKGGTVKGLIKEKDLVQIVDPAEIEKMVDKVLSENPKQLEQYRAGKTKLQGFFAGQVM 525

Query: 541 KISKGKANPGLLNKILLEKLNAKS 564
           K SKGKANPGLLNKIL EKLNAKS
Sbjct: 526 KASKGKANPGLLNKILQEKLNAKS 549
Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
Ricinus communis (taxid: 3988)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: -
>sp|Q9FV81|GATB_ARATH Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GATB PE=1 SV=1 Back     alignment and function description
>sp|A2ZF53|GATB_ORYSI Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica GN=GATB PE=3 SV=1 Back     alignment and function description
>sp|Q2R2Z0|GATB_ORYSJ Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=GATB PE=2 SV=1 Back     alignment and function description
>sp|C5Y3V8|GATB_SORBI Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Sorghum bicolor GN=GATB PE=3 SV=1 Back     alignment and function description
>sp|A9TWD9|GATB_PHYPA Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Physcomitrella patens subsp. patens GN=GATB PE=3 SV=1 Back     alignment and function description
>sp|Q8DGC4|GATB_THEEB Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Thermosynechococcus elongatus (strain BP-1) GN=gatB PE=3 SV=1 Back     alignment and function description
>sp|B0BZQ6|GATB_ACAM1 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Acaryochloris marina (strain MBIC 11017) GN=gatB PE=3 SV=1 Back     alignment and function description
>sp|Q10XY9|GATB_TRIEI Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Trichodesmium erythraeum (strain IMS101) GN=gatB PE=3 SV=1 Back     alignment and function description
>sp|C1E9T6|GATB1_MICSR Glutamyl-tRNA(Gln) amidotransferase subunit B-1, chloroplastic/mitochondrial OS=Micromonas sp. (strain RCC299 / NOUM17) GN=GATB-1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query564
225433298556 PREDICTED: glutamyl-tRNA(Gln) amidotrans 0.985 1.0 0.815 0.0
255574863549 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotra 0.973 1.0 0.817 0.0
449458866555 PREDICTED: glutamyl-tRNA(Gln) amidotrans 0.984 1.0 0.803 0.0
449525870556 PREDICTED: LOW QUALITY PROTEIN: glutamyl 0.984 0.998 0.798 0.0
356524618549 PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gl 0.973 1.0 0.790 0.0
356513040544 PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gl 0.964 1.0 0.780 0.0
18402234550 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) a 0.969 0.994 0.762 0.0
357488611542 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotra 0.960 1.0 0.752 0.0
224099987506 predicted protein [Populus trichocarpa] 0.859 0.958 0.8 0.0
353558774544 RecName: Full=Glutamyl-tRNA(Gln) amidotr 0.937 0.972 0.741 0.0
>gi|225433298|ref|XP_002282340.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  959 bits (2479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/564 (81%), Positives = 511/564 (90%), Gaps = 8/564 (1%)

Query: 1   MASFLFRTIQSHSFLLCPTTLLRRNNGAFYCSMKSTHTQTATQEKQQPPPKIKSSPQGNQ 60
           MAS LFR +Q+  FLL P+ L  R +G  YC++K T T TA  E +QP  ++K SPQ   
Sbjct: 1   MASILFRGVQARPFLLYPSALFGRKSGVLYCTIKGTQTHTAAPENKQP--QLKVSPQ--- 55

Query: 61  AKTRTLDRISKEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPV 120
            K + LD+IS++YEAIIGIETHVQLSTLTKAFC+CPYNYG+QPNT +CPICMGLPG LPV
Sbjct: 56  TKAKVLDKISQDYEAIIGIETHVQLSTLTKAFCSCPYNYGSQPNTCICPICMGLPGTLPV 115

Query: 121 VNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLP 180
           +NSKV+EFAVK+GLALN KLS NSKFDRKQYFYPDLPKGYQISQFDIPIA+GGY+D+DLP
Sbjct: 116 LNSKVIEFAVKVGLALNSKLSLNSKFDRKQYFYPDLPKGYQISQFDIPIASGGYVDLDLP 175

Query: 181 VEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVS 240
           VE+GGGHRRFGITRVHMEEDAGKLLH+ +G YSQEITF +     VDLNRAGVPLLEIVS
Sbjct: 176 VEFGGGHRRFGITRVHMEEDAGKLLHSGNGSYSQEITFSL---YSVDLNRAGVPLLEIVS 232

Query: 241 EPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKN 300
           EPDMR+G+EA+EYAAELQRLVRYLGVSNGNMQEGSLRCDVNVS+RP+GQ +FGTKVEIKN
Sbjct: 233 EPDMRSGIEASEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSVRPIGQLEFGTKVEIKN 292

Query: 301 LNSFSSINRAIDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFP 360
           LNSFS++NRAIDFEI+RQ  L+SQG++DQIVQETRLWEEG QKTVTMRKKEGL+DYRYFP
Sbjct: 293 LNSFSAMNRAIDFEISRQVSLHSQGQSDQIVQETRLWEEGGQKTVTMRKKEGLSDYRYFP 352

Query: 361 EPDLPEVILNKEYVDSIQSSLPELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIE 420
           EPDLPEVIL ++YV SI+SSLPELPE+KRRRYE+MGLSMQDVLFLAND+NVA FFDATI 
Sbjct: 353 EPDLPEVILTEDYVGSIRSSLPELPELKRRRYEKMGLSMQDVLFLANDVNVAGFFDATIG 412

Query: 421 KGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFE 480
           KGADVKLAANWIMGDIAAYMKNEKL+INEIKL+  ELAELIASIKG TISGKIGKEILFE
Sbjct: 413 KGADVKLAANWIMGDIAAYMKNEKLSINEIKLTPQELAELIASIKGGTISGKIGKEILFE 472

Query: 481 LMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVM 540
           L+AKGGTVKG+I EKDLVQIVDP+EIEKMVDKVL EN KQLEQYRGGKTKLQG+FAGQVM
Sbjct: 473 LIAKGGTVKGLIEEKDLVQIVDPAEIEKMVDKVLVENQKQLEQYRGGKTKLQGYFAGQVM 532

Query: 541 KISKGKANPGLLNKILLEKLNAKS 564
           K SKGKANPGLLNKILLEKLNAKS
Sbjct: 533 KASKGKANPGLLNKILLEKLNAKS 556

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255574863|ref|XP_002528338.1| Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, putative [Ricinus communis] gi|353558725|sp|B9SQR9.1|GATB_RICCO RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Short=Glu-AdT subunit B; Flags: Precursor gi|223532206|gb|EEF34010.1| Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449458866|ref|XP_004147167.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449525870|ref|XP_004169939.1| PREDICTED: LOW QUALITY PROTEIN: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356524618|ref|XP_003530925.1| PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B-like [Glycine max] Back     alignment and taxonomy information
>gi|356513040|ref|XP_003525222.1| PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B-like [Glycine max] Back     alignment and taxonomy information
>gi|18402234|ref|NP_564530.1| aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [Arabidopsis thaliana] gi|75263039|sp|Q9FV81.1|GATB_ARATH RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Short=Glu-AdT subunit B; Flags: Precursor gi|11078540|gb|AAG29096.1|AF239836_1 Glu-tRNA(Gln) amidotransferase subunit B [Arabidopsis thaliana] gi|15809911|gb|AAL06883.1| At1g48520/T1N15_12 [Arabidopsis thaliana] gi|18377821|gb|AAL67097.1| At1g48520/T1N15_12 [Arabidopsis thaliana] gi|110742579|dbj|BAE99203.1| hypothetical protein [Arabidopsis thaliana] gi|332194188|gb|AEE32309.1| aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357488611|ref|XP_003614593.1| Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [Medicago truncatula] gi|355515928|gb|AES97551.1| Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [Medicago truncatula] Back     alignment and taxonomy information
>gi|224099987|ref|XP_002311699.1| predicted protein [Populus trichocarpa] gi|222851519|gb|EEE89066.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|353558774|sp|A2ZF53.1|GATB_ORYSI RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Short=Glu-AdT subunit B; Flags: Precursor gi|125534689|gb|EAY81237.1| hypothetical protein OsI_36412 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query564
TAIR|locus:2198045550 GATB "GLU-ADT subunit B" [Arab 0.973 0.998 0.737 4.4e-219
TIGR_CMR|CHY_1103481 CHY_1103 "glutamyl-tRNA(Gln) a 0.843 0.989 0.470 1.3e-121
TIGR_CMR|BA_0322475 BA_0322 "glutamyl-tRNA(Gln) am 0.656 0.778 0.435 1.1e-120
TIGR_CMR|GSU_3380479 GSU_3380 "glutamyl-tRNA(Gln) a 0.840 0.989 0.474 6e-119
TIGR_CMR|CBU_1475477 CBU_1475 "glutamyl-tRNA(Gln) a 0.836 0.989 0.474 1.1e-110
TIGR_CMR|DET_1550492 DET_1550 "glutamyl-tRNA(Gln) a 0.840 0.963 0.424 2.2e-105
TIGR_CMR|APH_0470483 APH_0470 "glutamyl-tRNA(Gln) a 0.636 0.743 0.384 6.8e-98
TIGR_CMR|ECH_0813481 ECH_0813 "glutamyl-tRNA(Gln) a 0.624 0.731 0.404 1.4e-97
UNIPROTKB|Q97SE7480 gatB "Aspartyl/glutamyl-tRNA(A 0.833 0.979 0.410 2.9e-96
TIGR_CMR|NSE_0084488 NSE_0084 "glutamyl-tRNA(Gln) a 0.636 0.735 0.394 4.8e-93
TAIR|locus:2198045 GATB "GLU-ADT subunit B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2116 (749.9 bits), Expect = 4.4e-219, P = 4.4e-219
 Identities = 415/563 (73%), Positives = 471/563 (83%)

Query:     1 MASFLFRTIQSHSFLLCPTTLLRRNNGAFYCSMKSTHTQTATXXXXXXXXXXXXXXXGNQ 60
             M++ L RTIQ + F L  T+LLRR     + S++S  +QT T                + 
Sbjct:     1 MSTTLLRTIQLNQFSLLGTSLLRRRRSNNF-SVRSCGSQTTTTHEAKQSSPTRVAPKNH- 58

Query:    61 AKTRTLDRISKEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPV 120
              K+  LD I ++YEA+IGIETHVQLSTLTKAFC+C  NYG+ PNTS+CP+CMGLPGALPV
Sbjct:    59 -KSNQLDEILRDYEAVIGIETHVQLSTLTKAFCSCSNNYGSYPNTSICPVCMGLPGALPV 117

Query:   121 VNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLP 180
             +NSKVVEF V+LGLALNC LS  SKFDRKQYFYPDLPKGYQISQFDIPIA+GGY+DVD+P
Sbjct:   118 LNSKVVEFGVRLGLALNCDLSLKSKFDRKQYFYPDLPKGYQISQFDIPIASGGYVDVDIP 177

Query:   181 VEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVS 240
             +E+GGGHRRFGITRVHMEEDAGKLLH+D G+YSQ           VDLNRAGVPLLEIVS
Sbjct:   178 LEFGGGHRRFGITRVHMEEDAGKLLHSDTGDYSQ-----------VDLNRAGVPLLEIVS 226

Query:   241 EPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKN 300
             EPDMR+G+EAAEYA E+QR+ RYLGVSNGNMQEGSLRCDVN+SIRP+GQ++FGTKVEIKN
Sbjct:   227 EPDMRSGIEAAEYACEMQRIARYLGVSNGNMQEGSLRCDVNISIRPIGQAEFGTKVEIKN 286

Query:   301 LNSFSSINRAIDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFP 360
             LN+FS+I+RAIDFEI+RQALLY+QGKADQIV ETRLWEEG+QKTVTMRKKEGLADYRYFP
Sbjct:   287 LNAFSAISRAIDFEISRQALLYNQGKADQIVTETRLWEEGAQKTVTMRKKEGLADYRYFP 346

Query:   361 EPDLPEVILNKEYVDSIQSSLPELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIE 420
             EPDLPEVIL +EYVDSI++SLPELPE KRRRYE MGL MQDVLFLAND++VA +FDA I 
Sbjct:   347 EPDLPEVILTQEYVDSIRASLPELPEAKRRRYEAMGLGMQDVLFLANDVSVAEYFDAVIG 406

Query:   421 KGADVKLAANWIMGDIAAYMKNEKLTINXXXXXXXXXXXXXXXXXGATISGKIGKEILFE 480
             KGA+VKLAANWIM DIAAY+KNEKL+IN                   TISGKIGKEILFE
Sbjct:   407 KGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGKEILFE 466

Query:   481 LMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVM 540
             L+AKGGTVKG+I  KDLVQI DP+EIEKMV +V+SENPKQLEQYR GKTKLQG+FAGQVM
Sbjct:   467 LLAKGGTVKGMIKAKDLVQITDPAEIEKMVIQVVSENPKQLEQYRSGKTKLQGYFAGQVM 526

Query:   541 KISKGKANPGLLNKILLEKLNAK 563
             K+SKGKANPGLLNKILLEKLNAK
Sbjct:   527 KMSKGKANPGLLNKILLEKLNAK 549
GO:0005739 "mitochondrion" evidence=ISM
GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS
GO:0016874 "ligase activity" evidence=IEA
GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA
GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=ISS
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0016556 "mRNA modification" evidence=RCA
TIGR_CMR|CHY_1103 CHY_1103 "glutamyl-tRNA(Gln) amidotransferase, B subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0322 BA_0322 "glutamyl-tRNA(Gln) amidotransferase, B subunit" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3380 GSU_3380 "glutamyl-tRNA(Gln) amidotransferase, B subunit" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1475 CBU_1475 "glutamyl-tRNA(Gln) amidotransferase, B subunit" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1550 DET_1550 "glutamyl-tRNA(Gln) amidotransferase, B subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0470 APH_0470 "glutamyl-tRNA(Gln) amidotransferase, B subunit" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0813 ECH_0813 "glutamyl-tRNA(Gln) amidotransferase, B subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
UNIPROTKB|Q97SE7 gatB "Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B" [Streptococcus pneumoniae TIGR4 (taxid:170187)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0084 NSE_0084 "glutamyl-tRNA(Gln) amidotransferase, B subunit" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8DGC4GATB_THEEB6, ., 3, ., 5, ., -0.59680.87050.982yesno
Q7VEG1GATB_PROMA6, ., 3, ., 5, ., -0.53330.85630.9817yesno
Q3AD35GATB_CARHZ6, ., 3, ., 5, ., -0.46630.84390.9896yesno
B0BZQ6GATB_ACAM16, ., 3, ., 5, ., -0.58850.85280.9736yesno
B1XKN8GATB_SYNP26, ., 3, ., 5, ., -0.57220.84390.9596yesno
Q8YX22GATB_NOSS16, ., 3, ., 5, ., -0.56310.85100.9775yesno
A4S450GATB_OSTLU6, ., 3, ., 5, ., -0.56180.85460.9659yesno
C0QUH9GATB_PERMH6, ., 3, ., 5, ., -0.49490.83330.9915yesno
A5GPE6GATB_SYNPW6, ., 3, ., 5, ., -0.53560.84920.9696yesno
A2BZG6GATB_PROM16, ., 3, ., 5, ., -0.52340.84920.9755yesno
Q7V3M7GATB_PROMP6, ., 3, ., 5, ., -0.51420.85460.9836yesno
Q31DD5GATB_PROM96, ., 3, ., 5, ., -0.52840.85460.9836yesno
Q3AGQ3GATB_SYNSC6, ., 3, ., 5, ., -0.53970.84920.9696yesno
C0Z4E5GATB_BREBN6, ., 3, ., 5, ., -0.47350.84040.9916yesno
B7K293GATB_CYAP86, ., 3, ., 5, ., -0.56910.85280.9717yesno
B8FJV3GATB_DESAA6, ., 3, ., 5, ., -0.47860.83860.9936yesno
A2BU03GATB_PROM56, ., 3, ., 5, ., -0.51820.85460.9836yesno
Q3A2J9GATB_PELCD6, ., 3, ., 5, ., -0.49790.84570.9979yesno
C6E6Z3GATB_GEOSM6, ., 3, ., 5, ., -0.48870.84040.9895yesno
B9SQR9GATB_RICCO6, ., 3, ., 5, ., -0.81730.97341.0N/Ano
Q3M629GATB_ANAVT6, ., 3, ., 5, ., -0.56110.85100.9775yesno
B9LZ19GATB_GEOSF6, ., 3, ., 5, ., -0.49380.84210.9916yesno
B1WYK7GATB_CYAA56, ., 3, ., 5, ., -0.57140.86170.9818yesno
Q7U3S3GATB_SYNPX6, ., 3, ., 5, ., -0.52740.84920.9755yesno
A5CZ96GATB_PELTS6, ., 3, ., 5, ., -0.48770.84210.9937yesno
Q3AVV7GATB_SYNS96, ., 3, ., 5, ., -0.53360.84920.9696yesno
A2BNH6GATB_PROMS6, ., 3, ., 5, ., -0.51820.85460.9836yesno
B2J8F0GATB_NOSP76, ., 3, ., 5, ., -0.56460.85810.9857yesno
Q46I09GATB_PROMT6, ., 3, ., 5, ., -0.52530.85280.9796yesno
Q2JNH3GATB_SYNJB6, ., 3, ., 5, ., -0.56300.85100.9795yesno
Q9FV81GATB_ARATH6, ., 3, ., 5, ., -0.76280.96980.9945yesno
A2ZF53GATB_ORYSI6, ., 3, ., 5, ., -0.74160.93790.9724N/Ano
Q2JXB3GATB_SYNJA6, ., 3, ., 5, ., -0.56300.85100.9795yesno
B1X4D6GATB_PAUCH6, ., 3, ., 5, ., -0.52030.85460.9717N/Ano
Q10XY9GATB_TRIEI6, ., 3, ., 5, ., -0.57890.85810.9797yesno
C1MIE8GATB1_MICPC6, ., 3, ., 5, ., -0.55980.87230.9027N/Ano
B7KGN0GATB_CYAP76, ., 3, ., 5, ., -0.55930.86170.9818yesno
C5Y3V8GATB_SORBI6, ., 3, ., 5, ., -0.72890.92550.9525N/Ano
Q7TUK1GATB_PROMM6, ., 3, ., 5, ., -0.52130.84920.9676yesno
A5G9J8GATB_GEOUR6, ., 3, ., 5, ., -0.49390.84570.9958yesno
Q2RGY5GATB_MOOTA6, ., 3, ., 5, ., -0.48880.83510.9894yesno
Q31S19GATB_SYNE76, ., 3, ., 5, ., -0.56560.85630.9777yesno
B5ED20GATB_GEOBB6, ., 3, ., 5, ., -0.48000.84390.9754yesno
A9TWD9GATB_PHYPA6, ., 3, ., 5, ., -0.66850.90420.9074N/Ano
Q5N294GATB_SYNP66, ., 3, ., 5, ., -0.56360.85630.9777yesno
P74215GATB_SYNY36, ., 3, ., 5, ., -0.55350.85810.9777N/Ano
C1E9T6GATB1_MICSR6, ., 3, ., 5, ., -0.56870.90240.9373yesno
A2CDJ8GATB_PROM36, ., 3, ., 5, ., -0.52950.84920.9657yesno
Q2R2Z0GATB_ORYSJ6, ., 3, ., 5, ., -0.73840.93610.9705yesno
Q7NI42GATB_GLOVI6, ., 3, ., 5, ., -0.51010.84750.8628yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.50.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020369001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (555 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00018820001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (546 aa)
• ••••• 0.999
GSVIVG00032138001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (137 aa)
•   • • 0.940
GSVIVG00008056001
SubName- Full=Chromosome undetermined scaffold_1205, whole genome shotgun sequence; Flags- Frag [...] (316 aa)
•    •• 0.913
GSVIVG00030362001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (225 aa)
     •  0.899
GSVIVG00019051001
SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (216 aa)
     •  0.899
GSVIVG00014134001
SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (327 aa)
     •  0.899
GSVIVG00013655001
SubName- Full=Chromosome undetermined scaffold_522, whole genome shotgun sequence; (613 aa)
     •  0.899
GSVIVG00019272001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (574 aa)
• • • • 0.861
GSVIVG00038605001
SubName- Full=Chromosome chr3 scaffold_95, whole genome shotgun sequence; (468 aa)
•  •  • 0.823
GSVIVG00006883001
SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (927 aa)
   •  • 0.790

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query564
PLN02751544 PLN02751, PLN02751, glutamyl-tRNA(Gln) amidotransf 0.0
PRK05477474 PRK05477, gatB, aspartyl/glutamyl-tRNA amidotransf 0.0
COG0064483 COG0064, GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransf 0.0
TIGR00133478 TIGR00133, gatB, aspartyl/glutamyl-tRNA(Asn/Gln) a 0.0
pfam02934288 pfam02934, GatB_N, GatB/GatE catalytic domain 0.0
smart00845147 smart00845, GatB_Yqey, GatB domain 9e-60
pfam02637148 pfam02637, GatB_Yqey, GatB domain 7e-59
PRK14703771 PRK14703, PRK14703, glutaminyl-tRNA synthetase/Yqe 7e-39
PRK04028630 PRK04028, PRK04028, glutamyl-tRNA(Gln) amidotransf 1e-19
COG2511631 COG2511, GatE, Archaeal Glu-tRNAGln amidotransfera 2e-18
COG2511 631 COG2511, GatE, Archaeal Glu-tRNAGln amidotransfera 1e-17
PRK04028 630 PRK04028, PRK04028, glutamyl-tRNA(Gln) amidotransf 1e-13
TIGR00134 620 TIGR00134, gatE_arch, glutamyl-tRNA(Gln) amidotran 2e-13
TIGR00134620 TIGR00134, gatE_arch, glutamyl-tRNA(Gln) amidotran 5e-12
>gnl|CDD|215400 PLN02751, PLN02751, glutamyl-tRNA(Gln) amidotransferase Back     alignment and domain information 
 Score = 1022 bits (2645), Expect = 0.0
 Identities = 428/563 (76%), Positives = 479/563 (85%), Gaps = 19/563 (3%)

Query: 1   MASFLFRTIQSHSFLLCPTTLLRRNNGAFYCSMKSTHTQTATQEKQQPPPKIKSSPQGNQ 60
           MA  L R +Q+         L RR +  F     +  T  A  E +Q P K ++      
Sbjct: 1   MALTLLRGVQTPVPSRRGPRLFRRASSRFSVRATTA-TSAAAAESKQAPKKSEA------ 53

Query: 61  AKTRTLDRISKEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPV 120
                LD+I +++EA+IGIETHVQLSTLTKAFC+CPYNYGA+PNT+VCP+CMGLPG LPV
Sbjct: 54  -----LDKIEQDFEAVIGIETHVQLSTLTKAFCSCPYNYGAEPNTTVCPVCMGLPGTLPV 108

Query: 121 VNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLP 180
           +NSKVVE AVKLGLALNCK+S  SKFDRKQYFYPDLPKGYQISQFDIPIA GGY+DVDLP
Sbjct: 109 LNSKVVEKAVKLGLALNCKISLKSKFDRKQYFYPDLPKGYQISQFDIPIAEGGYVDVDLP 168

Query: 181 VEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVS 240
           VE+GGGHRRFGITRVHMEEDAGKLLH+ +G YSQ        +  VDLNRAGVPLLEIVS
Sbjct: 169 VEFGGGHRRFGITRVHMEEDAGKLLHSGNGSYSQ-------GSALVDLNRAGVPLLEIVS 221

Query: 241 EPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKN 300
           EPDMRTG+EAAEY AELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQ +FGTKVEIKN
Sbjct: 222 EPDMRTGIEAAEYGAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQEEFGTKVEIKN 281

Query: 301 LNSFSSINRAIDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFP 360
           +NSFS+++RAIDFEI+RQ LL+ QG+ D+IVQETRLW+EG+QKTVTMRKKEGLADYRYFP
Sbjct: 282 MNSFSAMSRAIDFEISRQILLHRQGQGDEIVQETRLWDEGAQKTVTMRKKEGLADYRYFP 341

Query: 361 EPDLPEVILNKEYVDSIQSSLPELPEMKRRRYEEMGLSMQDVLFLANDINVARFFDATIE 420
           EPDLPEV+L +EYVDSI++S+PELPE KRRRYE MGLSMQDVLFLAND NVA FFDAT+ 
Sbjct: 342 EPDLPEVVLTEEYVDSIRASMPELPEAKRRRYENMGLSMQDVLFLANDKNVAEFFDATLA 401

Query: 421 KGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFE 480
           KGAD KLAANWIMGDIAAY+KNEK++I+EIKL+  ELAELIASIK  TISGKIGKEIL E
Sbjct: 402 KGADAKLAANWIMGDIAAYLKNEKVSISEIKLTPKELAELIASIKDGTISGKIGKEILPE 461

Query: 481 LMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVM 540
           L+AKGGTVKG++ EK LVQI DP+EIE MVDKVL ENPKQLEQYRGGKTKLQGFFAGQVM
Sbjct: 462 LLAKGGTVKGLVEEKGLVQISDPAEIEAMVDKVLEENPKQLEQYRGGKTKLQGFFAGQVM 521

Query: 541 KISKGKANPGLLNKILLEKLNAK 563
           K SKGKANPGLLNKIL+EKLNAK
Sbjct: 522 KASKGKANPGLLNKILMEKLNAK 544

Length = 544
>gnl|CDD|235489 PRK05477, gatB, aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated Back     alignment and domain information
>gnl|CDD|223142 COG0064, GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232843 TIGR00133, gatB, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit Back     alignment and domain information
>gnl|CDD|217294 pfam02934, GatB_N, GatB/GatE catalytic domain Back     alignment and domain information
>gnl|CDD|197913 smart00845, GatB_Yqey, GatB domain Back     alignment and domain information
>gnl|CDD|217159 pfam02637, GatB_Yqey, GatB domain Back     alignment and domain information
>gnl|CDD|237793 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|235205 PRK04028, PRK04028, glutamyl-tRNA(Gln) amidotransferase subunit E; Validated Back     alignment and domain information
>gnl|CDD|225309 COG2511, GatE, Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|225309 COG2511, GatE, Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235205 PRK04028, PRK04028, glutamyl-tRNA(Gln) amidotransferase subunit E; Validated Back     alignment and domain information
>gnl|CDD|213509 TIGR00134, gatE_arch, glutamyl-tRNA(Gln) amidotransferase, subunit E Back     alignment and domain information
>gnl|CDD|213509 TIGR00134, gatE_arch, glutamyl-tRNA(Gln) amidotransferase, subunit E Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 564
PLN02751544 glutamyl-tRNA(Gln) amidotransferase 100.0
TIGR00133478 gatB glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) 100.0
COG0064483 GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B su 100.0
PRK05477474 gatB aspartyl/glutamyl-tRNA amidotransferase subun 100.0
KOG2438505 consensus Glutamyl-tRNA amidotransferase subunit B 100.0
PRK04028630 glutamyl-tRNA(Gln) amidotransferase subunit E; Val 100.0
TIGR00134620 gatE_arch glutamyl-tRNA(Gln) amidotransferase, sub 100.0
PF02934289 GatB_N: GatB/GatE catalytic domain; InterPro: IPR0 100.0
COG2511631 GatE Archaeal Glu-tRNAGln amidotransferase subunit 100.0
PRK14703771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 100.0
PF02637148 GatB_Yqey: GatB domain; InterPro: IPR018027 The Ga 100.0
smart00845147 GatB_Yqey GatB domain. This domain is found in Gat 100.0
PF09424143 YqeY: Yqey-like protein; InterPro: IPR019004 Putat 98.76
COG1610148 Uncharacterized conserved protein [Function unknow 98.64
PF04558164 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-s 96.92
PLN02859 788 glutamine-tRNA ligase 96.92
KOG1148 764 consensus Glutaminyl-tRNA synthetase [Translation, 95.68
>PLN02751 glutamyl-tRNA(Gln) amidotransferase Back     alignment and domain information 
Probab=100.00  E-value=4.1e-181  Score=1464.33  Aligned_cols=543  Identities=78%  Similarity=1.207  Sum_probs=506.4

Q ss_pred             ChhhhhhhhcccccccccchhhhccCCcceecccCccchhhhhcccCCCCCCCCCCCCccccccchhhhhcccceeeeee
Q 043020            1 MASFLFRTIQSHSFLLCPTTLLRRNNGAFYCSMKSTHTQTATQEKQQPPPKIKSSPQGNQAKTRTLDRISKEYEAIIGIE   80 (564)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~vIGLE   80 (564)
                      ||++++|++|+++++++++.+|+|+.+.|+|+...+++.+++.+ .+.++           +++.+....++|++|||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~~~~~e~vIGLE   68 (544)
T PLN02751          1 MALTLLRGVQTPVPSRRGPRLFRRASSRFSVRATTATSAAAAES-KQAPK-----------KSEALDKIEQDFEAVIGIE   68 (544)
T ss_pred             CchHHhhhcCCCCccccCcccccccCCcceeeeecccccccccc-ccCcc-----------ccccccccccCceEEEEEE
Confidence            89999999999999999999999999999999666555443222 22221           2223333346999999999


Q ss_pred             eeeeccCCcccccCCCCCCCCCCCCccCceecCCCCCCccCCHHHHHHHHHHHHHcCCccCCCccccccccCCCCCCCCc
Q 043020           81 THVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGY  160 (564)
Q Consensus        81 iHvQL~T~tKlFc~c~~~~~~~PNt~vc~v~lg~PGtLP~lN~~av~~Ai~~~lALnc~I~~~s~FdRK~YfYpDlPkGY  160 (564)
                      |||||+|+|||||+|+++||++|||+|||||+|+|||||+||++||++||++|+||||+|++.++|||||||||||||||
T Consensus        69 iHvqL~T~tKlFc~c~~~~g~~PNt~vcpvclg~PGtLPvLN~~aV~~Ai~~glALnc~I~~~s~FdRK~YfYpDLPkGY  148 (544)
T PLN02751         69 THVQLSTLTKAFCSCPYNYGAEPNTTVCPVCMGLPGTLPVLNSKVVEKAVKLGLALNCKISLKSKFDRKQYFYPDLPKGY  148 (544)
T ss_pred             EEEeecCCcCccCCCCcccCCCCccCcCccccCCCCCCCccCHHHHHHHHHHHHHcCCccccccEEeccccccCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCCcceeeccEEEEecccccCCCeeeEEEeEeeeccccccccccCCCCCccccccccccceeeeecCCCCceeEEee
Q 043020          161 QISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVS  240 (564)
Q Consensus       161 QITQ~~~PI~~~G~i~~~~~~~~~~~~k~i~I~rihLEEDagK~~h~~~~~~~~~~~~~~~~~~lvD~NRaGvPLiEIVT  240 (564)
                      ||||++.|||.||+|++.++.+++|+.|+|+|+||||||||||++|++.++++.  +     .+||||||||+|||||||
T Consensus       149 QITQ~~~PIa~~G~l~i~~~~~~~g~~k~I~I~rIhLEEDagK~ih~~~~~~~~--~-----~slvD~NRaGvPLIEIVT  221 (544)
T PLN02751        149 QISQFDIPIAEGGYVDVDLPVEFGGGHRRFGITRVHMEEDAGKLLHSGNGSYSQ--G-----SALVDLNRAGVPLLEIVS  221 (544)
T ss_pred             cccccccceecCCEEEEEecccCCCceeEEeeEEEEeccccccccccCCCCccC--c-----cceeeccCCCCceEEEee
Confidence            999999999999999997543334556899999999999999999964332211  1     247999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCcccCCcCCCcccccccccccCCCCCCCccEEEEcCCCChHHHHHHHHHHHHHHHH
Q 043020          241 EPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDFEIARQAL  320 (564)
Q Consensus       241 ePd~~s~~EA~~~~~~L~~ilr~lgvs~g~meeGslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~~i~~AI~~Ei~RQ~~  320 (564)
                      +|||+||+||++|+++||+||||+|||||+||+|+||||||||||+.|+..||+||||||||||++|++||+||+.||++
T Consensus       222 ePdi~speEA~a~l~~L~~ilr~lgisdg~meeGslRcDvNVSvr~~g~~~~GtRvEIKNlNS~~~v~kAI~yEi~RQ~~  301 (544)
T PLN02751        222 EPDMRTGIEAAEYGAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQEEFGTKVEIKNMNSFSAMSRAIDFEISRQIL  301 (544)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCcccCCcccCccccceeeccccCCCCCCCCeEEEeCCccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCccccccceeecCCCeeEeccCCCCCCCCCcCcCCCCCceecChHHHHHHHhcCCCCHHHHHHHHHHcCCCHH
Q 043020          321 LYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMKRRRYEEMGLSMQ  400 (564)
Q Consensus       321 ll~~g~~~~i~qETR~wd~~~~~T~~mR~Ke~~~DYRy~PEpdLpp~~l~~e~i~~i~~~lPElP~~~~~Rl~~ygLs~~  400 (564)
                      +++.|.+++|.||||+||+.+++|+.||+||++.|||||||||||||+|+++||++++++|||||+++++||.+|||+.+
T Consensus       302 ll~~G~~~~i~qeTR~wd~~~~~Tv~mR~KE~a~DYRyfPEPDLppi~i~~e~i~~ir~~lPElP~~~~~Rl~~~gLs~~  381 (544)
T PLN02751        302 LHRQGQGDEIVQETRLWDEGAQKTVTMRKKEGLADYRYFPEPDLPEVVLTEEYVDSIRASMPELPEAKRRRYENMGLSMQ  381 (544)
T ss_pred             HHHcCCCCcccccccCcCCCCCeEeecccccchhhcCcCCCCCCCceecCHHHHHHHHHhCCCCHHHHHHHHHHcCCCHH
Confidence            99999222999999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             HHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHHHcCccchHHHHHHHHH
Q 043020          401 DVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFE  480 (564)
Q Consensus       401 dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI~li~~g~IS~k~AK~il~~  480 (564)
                      ||.+|++|+.+++|||++++.+.+|+.+||||++||+++||+.++++++++++|++|++||.++++|+||+++||++|++
T Consensus       382 dA~~L~~~~~~a~ffe~~~~~~~~~k~~anwi~~el~~~l~~~~~~i~~~~l~p~~laeLi~li~~g~Is~~~AK~vl~~  461 (544)
T PLN02751        382 DVLFLANDKNVAEFFDATLAKGADAKLAANWIMGDIAAYLKNEKVSISEIKLTPKELAELIASIKDGTISGKIGKEILPE  461 (544)
T ss_pred             HHHHHHcCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCChhhcCCCHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence            99999999999999999998888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhHHhhhcCCCCChHHHHHHHHHHh
Q 043020          481 LMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANPGLLNKILLEKL  560 (564)
Q Consensus       481 ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGqVMk~tkGkAdPk~V~~il~e~L  560 (564)
                      |++++++|.+||+++||.|++|+++|+++|++||++||++|++|++||++++|||||||||+++|||||+.|+++|+++|
T Consensus       462 ~~~~~~~p~~iiee~gL~qisD~~~l~~iv~evi~~np~~V~~~k~Gk~k~~g~lvGqVMK~tkGkAnp~~v~~iL~e~L  541 (544)
T PLN02751        462 LLAKGGTVKGLVEEKGLVQISDPAEIEAMVDKVLEENPKQLEQYRGGKTKLQGFFAGQVMKASKGKANPGLLNKILMEKL  541 (544)
T ss_pred             HHhCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hc
Q 043020          561 NA  562 (564)
Q Consensus       561 ~~  562 (564)
                      ++
T Consensus       542 ~~  543 (544)
T PLN02751        542 NA  543 (544)
T ss_pred             cc
Confidence            75

>TIGR00133 gatB glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit Back     alignment and domain information
>COG0064 GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05477 gatB aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated Back     alignment and domain information
>KOG2438 consensus Glutamyl-tRNA amidotransferase subunit B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated Back     alignment and domain information
>TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E Back     alignment and domain information
>PF02934 GatB_N: GatB/GatE catalytic domain; InterPro: IPR006075 Glutamyl-tRNA(Gln) amidotransferase subunit B (6 Back     alignment and domain information
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E Back     alignment and domain information
>smart00845 GatB_Yqey GatB domain Back     alignment and domain information
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene Back     alignment and domain information
>COG1610 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query564
3h0l_B478 Structure Of Trna-Dependent Amidotransferase Gatcab 1e-124
2df4_B483 Structure Of Trna-Dependent Amidotransferase Gatcab 1e-118
3al0_B482 Crystal Structure Of The Glutamine Transamidosome F 1e-117
3kfu_F466 Crystal Structure Of The Transamidosome Length = 46 5e-95
2d6f_C 619 Crystal Structure Of Glu-Trna(Gln) Amidotransferase 1e-09
2hz7_A851 Crystal Structure Of The Glutaminyl-Trna Synthetase 5e-08
1zq1_C 633 Structure Of Gatde Trna-Dependent Amidotransferase 7e-07
1zq1_C633 Structure Of Gatde Trna-Dependent Amidotransferase 5e-04
>pdb|3H0L|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478 Back     alignment and structure 
Iteration: 1

 Score =  442 bits (1137), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/491 (43%), Positives = 324/491 (65%), Gaps = 19/491 (3%)
Query: 69  ISKEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEF 128
           ++++YEA+IG+E HVQ+ T TK FC C   +GA+PNT+VCP+C+G+PGALP+VN + VE+
Sbjct: 1   MNEKYEAVIGLEIHVQMDTKTKMFCGCKVEFGAEPNTNVCPVCLGMPGALPIVNKRAVEY 60
Query: 129 AVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHR 188
           A++  LALNC++   S F RK YFYPDLPKGYQISQ++ P+AT G+++++LP    G  +
Sbjct: 61  AIRASLALNCEVHEESVFARKHYFYPDLPKGYQISQYEKPLATNGWVELNLP---NGEKK 117
Query: 189 RFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGL 248
           +  I R+H+EEDAGK +H  D                VDLNRAG PL+EIV+EPD+RT  
Sbjct: 118 KVRIRRLHIEEDAGKNIHEGDKTL-------------VDLNRAGTPLMEIVTEPDIRTPE 164
Query: 249 EAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSIN 308
           EA  +  +L+ ++RY GVS  +M++G LRCD+NVSIRP G  +FGT+VEIKN+NSF  + 
Sbjct: 165 EARLFLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGSKEFGTRVEIKNVNSFRFVQ 224
Query: 309 RAIDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVI 368
           +A+++EI RQ  +  +G   ++VQETR ++  + KT  MR KE   DYRYFP+PDL  + 
Sbjct: 225 KALEYEIERQINVVEEG--GEVVQETRTFDPQTGKTYPMRTKEEAEDYRYFPDPDLVPLK 282
Query: 369 LNKEYVDSIQSSLPELPEMK-RRRYEEMGLSMQDVLFLANDINVARFFDATIEKGADVKL 427
           + KE+++ I+ ++PELP+ +  R  +E GLS  +   L N   V  FF+  +    + K 
Sbjct: 283 VKKEWIEEIKKNMPELPDQRFERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHFKEPKG 342
Query: 428 AANWIMGDIAAYMKNEKLTINXXXXXXXXXXXXXXXXXGATISGKIGKEILFELMAKGGT 487
             NW++ D+   ++++ ++I                     IS KIGKE++ E++  G T
Sbjct: 343 IVNWLINDLLGLLRDKGISIEESPVKPEHLAELVKLIKEKVISTKIGKEVIKEMVETGKT 402
Query: 488 VKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKA 547
              I+ EK L QI D ++I+++V K+  ++PK++E+ + G+ KL GFF GQVM+ ++GKA
Sbjct: 403 PSQIVEEKGLKQITDENQIKELVKKIFEKHPKEVERLKQGEEKLIGFFVGQVMRETRGKA 462
Query: 548 NPGLLNKILLE 558
           NP ++NK++ E
Sbjct: 463 NPQVVNKVIRE 473
>pdb|2DF4|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 483 Back     alignment and structure
>pdb|3AL0|B Chain B, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 482 Back     alignment and structure
>pdb|3KFU|F Chain F, Crystal Structure Of The Transamidosome Length = 466 Back     alignment and structure
>pdb|2D6F|C Chain C, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The Complex With Trna(Gln) Length = 619 Back     alignment and structure
>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From Deinococcus Radiodurans Length = 851 Back     alignment and structure
>pdb|1ZQ1|C Chain C, Structure Of Gatde Trna-Dependent Amidotransferase From Pyrococcus Abyssi Length = 633 Back     alignment and structure
>pdb|1ZQ1|C Chain C, Structure Of Gatde Trna-Dependent Amidotransferase From Pyrococcus Abyssi Length = 633 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query564
3al0_B482 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; 0.0
3h0l_B478 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s 0.0
3ip4_B483 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; 0.0
3kfu_F466 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; 0.0
1zq1_C633 Glutamyl-tRNA(Gln) amidotransferase subunit E; X-R 1e-122
2d6f_C 619 Glutamyl-tRNA(Gln) amidotransferase subunit E; lig 1e-117
2d6f_C619 Glutamyl-tRNA(Gln) amidotransferase subunit E; lig 1e-102
2hz7_A851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 1e-34
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Length = 482 Back     alignment and structure
 Score =  810 bits (2095), Expect = 0.0
 Identities = 218/494 (44%), Positives = 310/494 (62%), Gaps = 15/494 (3%)

Query: 72  EYEAIIGIETHVQLSTLTKAFCTCPYN-YGAQPNTSVCPICMGLPGALPVVNSKVVEFAV 130
            Y  +IG+E HVQLST TKAFC+CP + +   PNT++CP+C G PGALPV N +++ FAV
Sbjct: 2   RYRPVIGLEIHVQLSTKTKAFCSCPADVFELPPNTAICPVCTGQPGALPVPNEEMIRFAV 61

Query: 131 KLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRF 190
           K  LALNCK+   S+FDRK YFYPDLPKGYQISQ+  PIAT G+L++D       G ++ 
Sbjct: 62  KTALALNCKIHKYSRFDRKNYFYPDLPKGYQISQYFYPIATEGFLEIDG----DEGRKKV 117

Query: 191 GITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEA 250
            I R+H+EEDAGKL+H  D       +        VD+NR GVPL+EIV+EPD+ +  EA
Sbjct: 118 RIRRLHLEEDAGKLVHEGDSITRASYSL-------VDMNRCGVPLIEIVTEPDISSPREA 170

Query: 251 AEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRA 310
             +  +L+ +VRYLGVS G+M++G+LRCD N+S+      +   +VE+KN+NSF  + RA
Sbjct: 171 RVFMEKLRSIVRYLGVSTGDMEKGALRCDANISVVDTETGRQSNRVEVKNMNSFRFVERA 230

Query: 311 IDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILN 370
           +++E  R      +G+   + +ETR W+  ++ TV+MR KE  +DYRYFPEPD+P V+L+
Sbjct: 231 LEYEFERIVKAMERGE--DVERETRGWDMATKITVSMRGKEEESDYRYFPEPDIPPVVLS 288

Query: 371 KEYVDSIQSSLPELPEMKRRRY-EEMGLSMQDVLFLANDINVARFFDATIEKGADVKLAA 429
            EY++ ++  LPELP+ K  R+  E GL   D   L +   +A FF+  ++     K  +
Sbjct: 289 DEYLEEVKKELPELPDEKAERFMREYGLPEYDAKVLTSSKELAEFFEECVKVVNRPKDLS 348

Query: 430 NWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATISGKIGKEILFELMAKGGTVK 489
           NWIM ++   +    + I E KL+    A+L   +    IS KI KEI  E+   G    
Sbjct: 349 NWIMTEVLRELNERNIEITESKLTPQHFADLFKLMDEGKISIKIAKEIFPEVFETGKMPS 408

Query: 490 GIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANP 549
            I+ EK L QI D   IE++V K + +NPK ++ Y+ GK K  GFF G VM+ +KGKANP
Sbjct: 409 QIVEEKGLTQINDEKLIEELVKKAMEQNPKAVQDYKSGKKKAAGFFVGYVMRETKGKANP 468

Query: 550 GLLNKILLEKLNAK 563
            L N+I+ + L  +
Sbjct: 469 ELTNRIIQKLLEGE 482
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B* Length = 478 Back     alignment and structure
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B Length = 483 Back     alignment and structure
>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 466 Back     alignment and structure
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5 Length = 633 Back     alignment and structure
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5 Length = 619 Back     alignment and structure
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5 Length = 619 Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Length = 851 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query564
3ip4_B483 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; 100.0
3h0l_B478 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s 100.0
3al0_B482 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; 100.0
3kfu_F466 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; 100.0
2d6f_C619 Glutamyl-tRNA(Gln) amidotransferase subunit E; lig 100.0
1zq1_C633 Glutamyl-tRNA(Gln) amidotransferase subunit E; X-R 100.0
2hz7_A851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 100.0
1ng6_A148 Hypothetical protein YQEY; structural genomics, do 99.79
3tl4_X187 Glutaminyl-tRNA synthetase; glutamine, appended do 97.8
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B Back     alignment and structure
Probab=100.00  E-value=9.7e-178  Score=1424.71  Aligned_cols=473  Identities=47%  Similarity=0.828  Sum_probs=461.9

Q ss_pred             cccceeeeeeeeeeccCCcccccCCCCCCCCCCCCccCceecCCCCCCccCCHHHHHHHHHHHHHcCCccCCCccccccc
Q 043020           71 KEYEAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQ  150 (564)
Q Consensus        71 ~~~e~vIGLEiHvQL~T~tKlFc~c~~~~~~~PNt~vc~v~lg~PGtLP~lN~~av~~Ai~~~lALnc~I~~~s~FdRK~  150 (564)
                      |+|++||||||||||+|+|||||+|++.||++|||+|||||+|+||+|||||++||++||++|+||||+|++.|+|||||
T Consensus         1 m~~e~vIGLEvH~qL~T~tKlF~~~~~~fg~~PNt~v~pv~lg~PG~LPvlN~~av~~Ai~~~lALnc~I~~~s~FdRK~   80 (483)
T 3ip4_B            1 MHFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAAMALNMEIATESKFDRKN   80 (483)
T ss_dssp             CCEEEEEEEEEEEECCCSBCSSSSSBSSCCSSTTCSCCTTTTTCTTCCCCCBHHHHHHHHHHHHHTTCEECSEECCEEEE
T ss_pred             CCcceEEEEEEEEEecCCCCCcCCCCCcCCCCCccCcCchhccCCCCccccCHHHHHHHHHHHHHcCCcccccceeeecc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCceeccCCcceeeccEEEEecccccCCCeeeEEEeEeeeccccccccccCCCCCccccccccccceeeeecC
Q 043020          151 YFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNR  230 (564)
Q Consensus       151 YfYpDlPkGYQITQ~~~PI~~~G~i~~~~~~~~~~~~k~i~I~rihLEEDagK~~h~~~~~~~~~~~~~~~~~~lvD~NR  230 (564)
                      |||||||||||||||+.|||.||+|++++    +|+.|+|+|+||||||||||++|+++  +           ++|||||
T Consensus        81 YfYpDlPkgYQITQ~~~Pia~~G~l~i~~----~~~~k~I~I~rihlEEDagK~~h~~~--~-----------slvD~NR  143 (483)
T 3ip4_B           81 YFYPDNPKAYQISQFDQPIGENGYIDIEV----DGETKRIGITRLHMEEDAGKSTHKGE--Y-----------SLVDLNR  143 (483)
T ss_dssp             CCBTTBTTSEEEECSSSCSEEEEEEEECS----SSSCEEEEEEEEEEEECCCEEEEETT--E-----------EEEECTT
T ss_pred             ccCCCCCcCccccccccCeecCCEEEEEe----cCceEEEeEEEEeecchhhhhccCCC--c-----------eEEecCC
Confidence            99999999999999999999999999975    35569999999999999999999743  3           4599999


Q ss_pred             CCCceeEEeeCCCCCCHHHHHHHHHHHHHHHHHhCcccCCcCCCcccccccccccCCCCCCCccEEEEcCCCChHHHHHH
Q 043020          231 AGVPLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRA  310 (564)
Q Consensus       231 aGvPLiEIVTePd~~s~~EA~~~~~~L~~ilr~lgvs~g~meeGslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~~i~~A  310 (564)
                      ||||||||||+|||+||+||++|+++||++|||+|||||+||+|+|||||||||++.|+.++||||||||||||++|++|
T Consensus       144 aGvPLiEIVTePd~~s~eeA~a~~~~L~~ilr~lgvsd~~meeGslR~DvNVSvr~~g~~~~GtRvEiKNlnS~~~v~~A  223 (483)
T 3ip4_B          144 QGTPLIEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKG  223 (483)
T ss_dssp             TTCEEEEEEECSCBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTSCCCCCEEEEECCCSHHHHHHH
T ss_pred             CCCceEEEecCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcccCceEeeeeEeecCCCCCCCcceEEEecccCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCccccccceeecCCCeeEeccCCCCCCCCCcCcCCCCCceecChHHHHHHHhcCCCCHHHHHH
Q 043020          311 IDFEIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLPELPEMKRR  390 (564)
Q Consensus       311 I~~Ei~RQ~~ll~~g~~~~i~qETR~wd~~~~~T~~mR~Ke~~~DYRy~PEpdLpp~~l~~e~i~~i~~~lPElP~~~~~  390 (564)
                      |+||+.||+++|+.|+  .|.||||+||+.+|+|++||+||++.|||||||||||||.|+++|+++++++|||||+++++
T Consensus       224 I~yEi~RQ~~~le~Gg--~v~qETR~~d~~~g~T~~mR~KE~a~DYRyfPePDLpPv~i~~e~ie~i~~~lPElP~~k~~  301 (483)
T 3ip4_B          224 LEYEEKRQEEELLNGG--EIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIPELPDERKA  301 (483)
T ss_dssp             HHHHHHHHHHHHHHTC--CCCEEEEEECTTTSCEEEEEEECSCCCCCCEECTTSCCEECCHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC--cEeccceeecCCCCEEEecccccccccCCCCCCCCCCceecCHHHHHHHHHhCCCCHHHHHH
Confidence            9999999999999996  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHH-HcCCCHHHHHHHHhChhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHHHcCcc
Q 043020          391 RYE-EMGLSMQDVLFLANDINVARFFDATIEKGADVKLAANWIMGDIAAYMKNEKLTINEIKLSAAELAELIASIKGATI  469 (564)
Q Consensus       391 Rl~-~ygLs~~dA~~L~~d~~la~yFE~~v~~~~~pk~vaNWi~~ell~~L~~~~~~i~~~~ispe~LaeLI~li~~g~I  469 (564)
                      ||. +||||.+||.+|++++.+++|||++++.+.+|+.+||||++|++++||+.++++++++++|++|++|+++|++|+|
T Consensus       302 R~~~eygLs~~dA~~L~~~~~~a~~Fe~~v~~~~~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~li~li~~g~I  381 (483)
T 3ip4_B          302 KYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGMIKLIEDGTM  381 (483)
T ss_dssp             HHHHTSCCCHHHHHHHTSSHHHHHHHHHHHTTTCCHHHHHHHHHTHHHHHHHHTTCCGGGSSCCHHHHHHHHHHHHHTSS
T ss_pred             HHHhhcCCCHHHHHHHHcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhCCCCHHhcCCCHHHHHHHHHHHHcCCc
Confidence            996 6999999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhChHHHHHhhcCccchhhHHHhHHhhhcCCCCCh
Q 043020          470 SGKIGKEILFELMAKGGTVKGIIIEKDLVQIVDPSEIEKMVDKVLSENPKQLEQYRGGKTKLQGFFAGQVMKISKGKANP  549 (564)
Q Consensus       470 S~k~AK~il~~ll~~~~~~~~IIee~~l~qisD~~eL~~lV~eVi~~np~~Ve~yk~Gk~k~~gflmGqVMk~tkGkAdP  549 (564)
                      |+++||++|..|++++++|.+||+++||.|+||+++|+++|++||++||++|++|++||+|++|||||||||+|+|||||
T Consensus       382 s~~~ak~vl~~~~~~~~~p~~iVee~GL~qisD~~eLe~iV~eVIa~np~~v~~~k~GK~ka~gfLVGQVMK~tkGKAdP  461 (483)
T 3ip4_B          382 SSKIAKKVFPELAAKGGNAKQIMEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANP  461 (483)
T ss_dssp             CHHHHHHHHHHHHHHCCCHHHHHHTTTCCCBCCHHHHHHHHHHHHHHCHHHHHHHHTTCSCHHHHHHHHHHHHTTSCBCH
T ss_pred             cHHHHHHHHHHHHhcCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHCHHHHHHHHccCHHHHHHHHHHHHHHhCCCCCH
Confidence            99999999999999899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 043020          550 GLLNKILLEKLNA  562 (564)
Q Consensus       550 k~V~~il~e~L~~  562 (564)
                      ++|+++|+++|+.
T Consensus       462 ~~VnelL~e~L~~  474 (483)
T 3ip4_B          462 QLVNQLLKQELDK  474 (483)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999984
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B* Back     alignment and structure
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Back     alignment and structure
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5 Back     alignment and structure
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5 Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY, PFAM02637, DUF186, PSI, protein structure initiative; 1.40A {Bacillus subtilis} SCOP: a.182.1.1 Back     alignment and structure
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 564
d2f2ab2290 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln 1e-126
d2d6fc3319 d.128.1.5 (C:1-270,C:396-444) Glutamyl-tRNA(Gln) a 2e-79
d1zq1c3321 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) a 6e-73
d2f2ab1107 a.182.1.2 (B:294-400) Aspartyl/glutamyl-tRNA(Asn/G 1e-25
d2d6fc159 a.182.1.2 (C:445-503) Glutamyl-tRNA(Gln) amidotran 2e-13
d1zq1c156 a.182.1.2 (C:457-512) Glutamyl-tRNA(Gln) amidotran 6e-13
>d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 290 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: GatB/GatE catalytic domain-like
domain: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

 Score =  369 bits (949), Expect = e-126
 Identities = 145/309 (46%), Positives = 205/309 (66%), Gaps = 19/309 (6%)

Query: 74  EAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLG 133
           E +IG+E HV+L T +K F   P ++GA+PN++   I +  PG LPVVN + V++A++  
Sbjct: 1   ETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAA 60

Query: 134 LALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGIT 193
           +ALN +++  SKFDRK YFYPD PK YQISQFD PI   GY+D+++     G  +R GIT
Sbjct: 61  MALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEV----DGETKRIGIT 116

Query: 194 RVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGVPLLEIVSEPDMRTGLEAAEY 253
           R+HMEEDAGK  H  +                VDLNR G PL+EIVSEPD+R+  EA  Y
Sbjct: 117 RLHMEEDAGKSTHKGEYSL-------------VDLNRQGTPLIEIVSEPDIRSPKEAYAY 163

Query: 254 AAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDF 313
             +L+ +++Y GVS+  M+EGSLRCD N+S+RP GQ KFGTK E+KNLNSF+ + + +++
Sbjct: 164 LEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEY 223

Query: 314 EIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEY 373
           E  RQ      G   +I QETR ++E + KT+ MR KEG  DYRYFPEPD+  + ++  +
Sbjct: 224 EEKRQEEELLNGG--EIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAW 281

Query: 374 VDSIQSSLP 382
            + ++ ++P
Sbjct: 282 KERVRQTIP 290
>d2d6fc3 d.128.1.5 (C:1-270,C:396-444) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 319 Back     information, alignment and structure
>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Pyrococcus abyssi [TaxId: 29292]} Length = 321 Back     information, alignment and structure
>d2f2ab1 a.182.1.2 (B:294-400) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 107 Back     information, alignment and structure
>d2d6fc1 a.182.1.2 (C:445-503) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 59 Back     information, alignment and structure
>d1zq1c1 a.182.1.2 (C:457-512) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Pyrococcus abyssi [TaxId: 29292]} Length = 56 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query564
d2f2ab2290 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s 100.0
d2d6fc3319 Glutamyl-tRNA(Gln) amidotransferase subunit E, Gat 100.0
d1zq1c3321 Glutamyl-tRNA(Gln) amidotransferase subunit E, Gat 100.0
d2f2ab1107 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s 99.92
d1zq1c156 Glutamyl-tRNA(Gln) amidotransferase subunit E, Gat 99.37
d2d6fc159 Glutamyl-tRNA(Gln) amidotransferase subunit E, Gat 99.31
d1ng6a_148 Hypothetical protein YqeY {Bacillus subtilis [TaxI 98.85
d1zq1c3321 Glutamyl-tRNA(Gln) amidotransferase subunit E, Gat 91.71
>d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: GatB/GatE catalytic domain-like
domain: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.9e-130  Score=987.87  Aligned_cols=290  Identities=50%  Similarity=0.894  Sum_probs=281.8

Q ss_pred             ceeeeeeeeeeccCCcccccCCCCCCCCCCCCccCceecCCCCCCccCCHHHHHHHHHHHHHcCCccCCCccccccccCC
Q 043020           74 EAIIGIETHVQLSTLTKAFCTCPYNYGAQPNTSVCPICMGLPGALPVVNSKVVEFAVKLGLALNCKLSFNSKFDRKQYFY  153 (564)
Q Consensus        74 e~vIGLEiHvQL~T~tKlFc~c~~~~~~~PNt~vc~v~lg~PGtLP~lN~~av~~Ai~~~lALnc~I~~~s~FdRK~YfY  153 (564)
                      |+|||||||+||+|+|||||+|++.||++|||+|||||+|+||+||+||++||++|+++|+||||+|++.++||||||||
T Consensus         1 E~vIGLEiH~QL~T~tKlFc~c~~~~~~~pNt~vc~v~lg~PG~lPvlN~~av~~Ai~~~lalnc~I~~~~~fdRK~YfY   80 (290)
T d2f2ab2           1 ETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAAMALNMEIATESKFDRKNYFY   80 (290)
T ss_dssp             CCEEEEEEEEECCCSBCSSSSSBSSCCSSTTCSCCTTTTTCTTCCCCCBHHHHHHHHHHHHHTTCEECSEECCEEEECCC
T ss_pred             CCEEEEEEEEEeCCCcCCCCCCCCcCCCCcccccCccccCCCCcccccCHHHHHHHHHHHHHhCCeecccceecccceec
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeccCCcceeeccEEEEecccccCCCeeeEEEeEeeeccccccccccCCCCCccccccccccceeeeecCCCC
Q 043020          154 PDLPKGYQISQFDIPIATGGYLDVDLPVEYGGGHRRFGITRVHMEEDAGKLLHADDGEYSQEITFPIIYALQVDLNRAGV  233 (564)
Q Consensus       154 pDlPkGYQITQ~~~PI~~~G~i~~~~~~~~~~~~k~i~I~rihLEEDagK~~h~~~~~~~~~~~~~~~~~~lvD~NRaGv  233 (564)
                      |||||||||||++.|||.||+|++.+    +++.|+|+|+||||||||||++|.++  +           ++|||||||+
T Consensus        81 pDlpkgyQiTQ~~~pi~~~G~l~~~~----~~~~k~i~I~rihlEEDagK~~h~~~--~-----------slvD~NRaGv  143 (290)
T d2f2ab2          81 PDNPKAYQISQFDQPIGENGYIDIEV----DGETKRIGITRLHMEEDAGKSTHKGE--Y-----------SLVDLNRQGT  143 (290)
T ss_dssp             TTCTTSEEEECSSSCSEEEEEEEEEE----TTEEEEEEEEEEEEEECCCEEEECSS--E-----------EEEECSSTTC
T ss_pred             ccCccchhhhccccccccccEEeeec----CCcceEEeeeeEEEeecccccccCCC--c-----------cEEeeccCCC
Confidence            99999999999999999999999875    46679999999999999999999642  3           4599999999


Q ss_pred             ceeEEeeCCCCCCHHHHHHHHHHHHHHHHHhCcccCCcCCCcccccccccccCCCCCCCccEEEEcCCCChHHHHHHHHH
Q 043020          234 PLLEIVSEPDMRTGLEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQSKFGTKVEIKNLNSFSSINRAIDF  313 (564)
Q Consensus       234 PLiEIVTePd~~s~~EA~~~~~~L~~ilr~lgvs~g~meeGslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~~i~~AI~~  313 (564)
                      |||||||+|||+||+||++|+++|++||+|+|||||+||+|+|||||||||++.|+..+|+||||||||||++|++||+|
T Consensus       144 PLiEIVTePd~~s~~eA~~~~~~L~~il~~lgvsd~~me~GslR~DvNVSi~~~g~~~~G~RvEIKNlnS~~~i~~aI~~  223 (290)
T d2f2ab2         144 PLIEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEY  223 (290)
T ss_dssp             EEEEEEECTTBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEECCCSSSCCCCCCCEEECCCCSTTTHHHHHH
T ss_pred             ceeeeeccCCcCCHHHHHHHHHHHHHHhhhcCcccccccccccccccceeecCCCcccccceEEeecchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCccccccceeecCCCeeEeccCCCCCCCCCcCcCCCCCceecChHHHHHHHhcCC
Q 043020          314 EIARQALLYSQGKADQIVQETRLWEEGSQKTVTMRKKEGLADYRYFPEPDLPEVILNKEYVDSIQSSLP  382 (564)
Q Consensus       314 Ei~RQ~~ll~~g~~~~i~qETR~wd~~~~~T~~mR~Ke~~~DYRy~PEpdLpp~~l~~e~i~~i~~~lP  382 (564)
                      |+.||+++++.|+  +|.||||+||+.+++|++||+||++.|||||||||||||.|+++||++|+++||
T Consensus       224 Ei~RQ~~~l~~g~--~i~qeTR~~d~~~~~T~~mRsKE~a~DYRYfPEPDLppi~i~~~~i~~ik~~lP  290 (290)
T d2f2ab2         224 EEKRQEEELLNGG--EIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIP  290 (290)
T ss_dssp             HHHHHHHHTTTTT--CCCCCEEEEETTTTEEEEEECCCSCCCCCCEECTTSCCEECCHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhcCC--cceeecccCccCCCEEeeCCCCCCccCcCCCCCCCCCceecCHHHHHHHHHhCc
Confidence            9999999999996  999999999999999999999999999999999999999999999999999988
>d2d6fc3 d.128.1.5 (C:1-270,C:396-444) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2f2ab1 a.182.1.2 (B:294-400) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1zq1c1 a.182.1.2 (C:457-512) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2d6fc1 a.182.1.2 (C:445-503) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ng6a_ a.182.1.1 (A:) Hypothetical protein YqeY {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure