Citrus Sinensis ID: 043057

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MEDSKSSDEDADIKKGEILKSVSDSDEDNFVEYVEFNEVQHRRRAIFGYGVDSGDQKDSYEEGEDDDSDEGADDDNDTVDNQLSSGTEEREDNDDARISFSLYTGNQHQHQKLSKEVHDSSKGEENDDDEFFKPKVKGNKEEAYESIRDRFVMGDWSKAAQKNQVSKGKSEDDDSDDAVYGDYEDLETCEKHEGQCEDNSGSEGIENEDESAVEEWRLKKLTLRAKFDAQYPFSFD
Secondary Structure (PSIPRED)
cccccccHHHHHHHHcccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccHHHHHHHHHcccccHHHHccccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccEEEEEcccccEEHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccHHHHHHHHHHccccccccHHHHHHHHHHHccccccccHHHcccHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
medskssdedadikkgeilksvsdsdednfVEYVEFNEVQHRRRAIfgygvdsgdqkdsyeegedddsdegadddndtvdnqlssgteerednddarisfslytgnqhqhqklskevhdsskgeendddeffkpkvkgnkEEAYESIRDrfvmgdwskaaqknqvskgksedddsddavygdyedletcekhegqcednsgsegienedeSAVEEWRLKKLTLRAkfdaqypfsfd
Flexible Loop (DISEMBL)
medskssdedadikkgeilksvsdsdednFVEYVefnevqhrrraifgygvdsgdqkdsYEEGEDddsdegadddndtvdnqlssgteerednddARISFSLYTGNQHQHQKLSKevhdsskgeendddeffkpkvkgnkeeAYESIrdrfvmgdwskaaqknqvskgksedddsddaVYGDYEDLETCEKHegqcednsgsegienedeSAVEEWRLKKLtlrakfdaqypfsfd
Low Complexity Region (SEG)
MEDSKSSDEDADIKKGEILKSVSDSDEDNFVEYVEFNEVQHRRRAIFGYGVDSGDQKdsyeegedddsdegadddndTVDNQLSSGTEEREDNDDARISFSLYTGNQHQHQKLSKEVHDSSKGEENDDDEFFKPKVKGNKEEAYESIRDRFVMGDWSKAAQKNQvskgksedddsddavygdyedLETCEKHEGQCEDNSGSEGIENEDESAVEEWRLKKLTLRAKFDAQYPFSFD
Disordered region (IsUnstruct)
****************************NFVEYVEFNEVQHRRRAIFGYGV********************************************************************************************************************************************************************WRLKKLTLRAKF*********
Disordered Region (DISOPRED)
*************************************EVQH***************************************************************************************DEFFKPKVKGNKEEAYESIRDRFVMGDWSK*******************AVYGDYEDLET************************************************
Disordered Region (DISEMBL)
***********DIKKGEILKSVSDSDEDNFVEYVEFNEVQHRRRAIFGYGVDSGD********************NDTVDN************DDARISFSLYT***********************DDEFFKPKVKGNKEEAYESIRDRFVMGDWSK******************DAVYGDYEDLETC***********************VEEWRLKKLTLRAKFDAQYPFSFD
Disordered Region (DISPRO)
****************************NFVEYVEFNEVQHRRRAIFGYGVD******************************************************************************FFKPKVKGNKEEAYESIRDRFVMGDWSKAAQKNQVSKGK**DDDSDDAVYGDYEDLET************************VEEWRLKKLTLRAKFDAQYPFSFD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDSKSSDEDADIKKGEILKSVSDSDEDNFVEYVEFNEVQHRRRAIFGYGVDSGDQKDSYEEGEDDDSDEGADDDNDTVDNQLSSGTEEREDNDDARISFSLYTGNQHQHQKLSKEVHDSSKGEENDDDEFFKPKVKGNKEEAYESIRDRFVMGDWSKAAQKNQVSKGKSEDDDSDDAVYGDYEDLETCEKHEGQCEDNSGSEGIENEDESAVEEWRLKKLTLRAKFDAQYPFSFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
449444194	1198	PREDICTED: ribosome biogenesis protein B	0.843	0.166	0.370	1e-23
224133372	1181	predicted protein [Populus trichocarpa]	0.944	0.188	0.350	6e-20
414866658	722	TPA: hypothetical protein ZEAMMB73_55747	0.771	0.252	0.349	1e-16
414866659	725	TPA: hypothetical protein ZEAMMB73_55747	0.766	0.249	0.347	5e-16
449533278	304	PREDICTED: ribosome biogenesis protein B	0.682	0.529	0.353	7e-14
108707986	431	expressed protein [Oryza sativa Japonica	0.75	0.410	0.373	1e-13
242041043	1184	hypothetical protein SORBIDRAFT_01g03627	0.411	0.081	0.454	3e-13
302760207	1120	hypothetical protein SELMODRAFT_165786 [	0.313	0.066	0.494	7e-13
302799593	1113	hypothetical protein SELMODRAFT_179002 [	0.313	0.066	0.505	8e-13
357112362	1178	PREDICTED: ribosome biogenesis protein B	0.423	0.084	0.467	1e-12

>gi|449444194|ref|XP_004139860.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Cucumis sativus]

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/251 (37%), Positives = 127/251 (50%), Gaps = 52/251 (20%)

Query: 27  EDNFVEYVEFNEVQHRRRAIFGYGVDSGDQKDSYEEGED-DDSD---------------- 69
           ED+  E+VEF+E + RR+A+FG  V+S D  DS EEG D DDSD                
Sbjct: 502 EDHMKEHVEFHEGRFRRKAVFGNDVESDDLMDSDEEGNDGDDSDINDEKMSDYDEDDEQD 561

Query: 70  EGADDDNDTVDNQLSSGTEEREDNDDARISFSLYTGNQHQHQKLSKEVHDSSKGEENDDD 129
           +    +       LS  T  R+  +  ++   +Y  +       S E HD+S  EEND  
Sbjct: 562 DAGMGNTSKWKEPLSERTRSRQHVNLMKL---VYGKSTDISTTSSNEAHDTS-DEENDGG 617

Query: 130 EFFKP-----KVKGNKEEA----------------------YESIRDRFVMGDWSKAAQK 162
           +FF P     KV  N  E                        ESIRDRFV GDWSKAA +
Sbjct: 618 DFFTPVGRINKVHSNDSEVVDGENANSEDCSKHFKISNDLDIESIRDRFVTGDWSKAALR 677

Query: 163 NQVSKGKSEDDDSDDAVYGDYEDLETCEKHEGQCEDNSGSEGIENEDESAVEEWRLKKLT 222
           N+     SE  ++DD+V+ D+EDLET EK+E    +N+    ++  ++S +EE RLKKL 
Sbjct: 678 NK----SSEVIENDDSVFADFEDLETGEKYESFHAENTTDATVQTTEDSTIEERRLKKLA 733

Query: 223 LRAKFDAQYPF 233
            RA+FDA+YPF
Sbjct: 734 RRAQFDAEYPF 744

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133372|ref|XP_002328026.1| predicted protein [Populus trichocarpa] gi|222837435|gb|EEE75814.1| predicted protein [Populus trichocarpa]

 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 104/297 (35%), Positives = 145/297 (48%), Gaps = 74/297 (24%)

Query: 1   MEDSKSSDEDADIKKGEILKSVSD-SDE-------------DNFVEYVEFNEVQHRRRAI 46
           ++ S+S+DED   +K  ++   SD SDE             D   E VEF+  + RR+A+
Sbjct: 450 LDGSESTDEDEAAQKDAVVNGESDGSDEEHGTAAKQKADPQDRMKEQVEFHGGRLRRKAM 509

Query: 47  FGYGVDSGDQKDSYEEGEDDDSDEGADDDNDTVDNQLS---SGTEEREDNDDARIS---- 99
           FG  +D  D KD          DEG++ D+D  D  LS      E+R++ D   IS    
Sbjct: 510 FGNDIDDKDLKDC---------DEGSESDDDVGDQSLSDSEFSEEDRDEEDMGNISKWKE 560

Query: 100 ------FSLYTGNQHQH---QKLSKEVHDSSKGEEND--DDEFFKPKVKGNK-------- 140
                 FS    N  Q    +  S  +++   G E++  DDEFFK K +GNK        
Sbjct: 561 SLVDRTFSKQNNNLMQRVYGKSASTPINEKQDGSEDEESDDEFFKLKGEGNKKLREGFDV 620

Query: 141 ----------------------EEAYESIRDRFVMGDWSKAAQKNQVSKGKSEDDDSDDA 178
                                 EE YESIRDRFV GDWSKAAQ+N++     EDD  +D+
Sbjct: 621 ENVDADECSKFTNYSDLKNWKDEEIYESIRDRFVTGDWSKAAQRNKLPTANDEDD--EDS 678

Query: 179 VYGDYEDLETCEKHEGQCEDNSGSEGIENEDESAVEEWRLKKLTLRAKFDAQYPFSF 235
           VYGD+EDLET EKH    ++ SG+  ++ EDE   E+ +LKKL L  + D ++   F
Sbjct: 679 VYGDFEDLETGEKHGNHQKEESGNVSMQKEDELE-EQRKLKKLALHEEVDEKHGAKF 734

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414866658|tpg|DAA45215.1| TPA: hypothetical protein ZEAMMB73_557479 [Zea mays]

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 123/255 (48%), Gaps = 73/255 (28%)

Query: 32  EYVEFNEVQHRRRAIFGYGVDSGDQKDSYEEGEDDDSDEGADDDNDTVDNQLS------- 84
           E VE    + RRRA+      S + +D ++   D+ +DE A+DD D+ D+QLS       
Sbjct: 487 EEVEVCNGRLRRRAV------SANFRDDFD---DEGTDEDANDDEDSGDDQLSGDSASSA 537

Query: 85  --SGTEEREDNDDARISFSLYTGNQHQHQ-KLSKEVHD------SSKGEENDD------- 128
             SG  + E  + ++   SL      +    L + V+        S  EENDD       
Sbjct: 538 DDSGEAKDELENTSKWKESLLARTMSRRSDNLMQLVYGLPSTKLGSVAEENDDSEANSSD 597

Query: 129 DEFFKPKVKGNKEEA-------------------------------YESIRDRFVMGDWS 157
           DEFF+PK  G K++A                                +SIRDRFV G+WS
Sbjct: 598 DEFFRPK--GQKQQAKNESPSFGDIDGEDCSKFFKAELKDWSNEDLIKSIRDRFVTGNWS 655

Query: 158 KAAQKNQVSKGKSEDDDSDDAVYGDYEDLETCEKHEGQCEDNSGSEGIENEDESAVEEWR 217
           KA  + Q +  + EDD+    +YGD+EDLET E H  Q ++N     +E +D+  VEE R
Sbjct: 656 KATLRGQDTDDRGEDDEE---MYGDFEDLETGEVHMAQTDEN-----VEAKDDPEVEERR 707

Query: 218 LKKLTLRAKFDAQYP 232
           LKKL  RAKFDAQYP
Sbjct: 708 LKKLAQRAKFDAQYP 722

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414866659|tpg|DAA45216.1| TPA: hypothetical protein ZEAMMB73_557479 [Zea mays]

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 90/259 (34%), Positives = 123/259 (47%), Gaps = 78/259 (30%)

Query: 32  EYVEFNEVQHRRRAIFGYGVDSGDQKDSYEEGEDDDSDEGADDDNDTVDNQLS------- 84
           E VE    + RRRA+      S + +D ++   D+ +DE A+DD D+ D+QLS       
Sbjct: 487 EEVEVCNGRLRRRAV------SANFRDDFD---DEGTDEDANDDEDSGDDQLSGDSASSA 537

Query: 85  --SG-----------TEEREDNDDARISFSLYTGNQHQHQKLSKEVHDSSKGEENDD--- 128
             SG           T + +++  AR + S  + N  Q           S  EENDD   
Sbjct: 538 DDSGEASDPEDELENTSKWKESLLAR-TMSRRSDNLMQLVYGLPSTKLGSVAEENDDSEA 596

Query: 129 ----DEFFKPKVKGNKEEA-------------------------------YESIRDRFVM 153
               DEFF+PK  G K++A                                +SIRDRFV 
Sbjct: 597 NSSDDEFFRPK--GQKQQAKNESPSFGDIDGEDCSKFFKAELKDWSNEDLIKSIRDRFVT 654

Query: 154 GDWSKAAQKNQVSKGKSEDDDSDDAVYGDYEDLETCEKHEGQCEDNSGSEGIENEDESAV 213
           G+WSKA  + Q +  + EDD+    +YGD+EDLET E H  Q ++N     +E +D+  V
Sbjct: 655 GNWSKATLRGQDTDDRGEDDEE---MYGDFEDLETGEVHMAQTDEN-----VEAKDDPEV 706

Query: 214 EEWRLKKLTLRAKFDAQYP 232
           EE RLKKL  RAKFDAQYP
Sbjct: 707 EERRLKKLAQRAKFDAQYP 725

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449533278|ref|XP_004173603.1| PREDICTED: ribosome biogenesis protein BMS1 homolog, partial [Cucumis sativus]

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 105/212 (49%), Gaps = 51/212 (24%)

Query: 66  DDSDEGAD-DDNDTVDNQLSSGTEEREDNDDARISFSLYT------GNQHQHQKLSK--- 115
           D  +EG D DD+D  D ++S   E+ E +D    + S +           QH  L K   
Sbjct: 1   DSDEEGNDGDDSDINDEKMSDYDEDDEQDDAGMGNTSKWKEPLSERTRSRQHVNLMKLVY 60

Query: 116 ------------EVHDSSKGEENDDDEFFKPKVKGNKEEA-------------------- 143
                       E HD+S  EEND  +FF P  + NK ++                    
Sbjct: 61  GKSTDISTTSSNEAHDTSD-EENDGGDFFTPVGRINKNDSEVVVGENANSEDCSKHFKIS 119

Query: 144 ----YESIRDRFVMGDWSKAAQKNQVSKGKSEDDDSDDAVYGDYEDLETCEKHEGQCEDN 199
                ESIRDRFV GDWSKAA +N+     SE  ++DD+V+ D+EDLET EK+E    +N
Sbjct: 120 NDLDIESIRDRFVTGDWSKAALRNK----SSEVIENDDSVFADFEDLETGEKYESFHAEN 175

Query: 200 SGSEGIENEDESAVEEWRLKKLTLRAKFDAQY 231
           +    ++  ++S +EE RLKKL  RA+FDA+Y
Sbjct: 176 TTDATVQTTEDSTIEERRLKKLARRAQFDAEY 207

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108707986|gb|ABF95781.1| expressed protein [Oryza sativa Japonica Group] gi|215765682|dbj|BAG87379.1| unnamed protein product [Oryza sativa Japonica Group]

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 113/209 (54%), Gaps = 32/209 (15%)

Query: 52  DSGDQKDSYEEGEDDDSDEGADDDNDTVDNQ-----LSSGTEEREDNDDARISFS----- 101
           +SGD  D   EG  DDS+E  D D++T +N      L + T  R   +  ++ +      
Sbjct: 225 NSGD--DQLSEGSADDSEESLDSDDETENNSKWKESLLARTLSRRSANLMQLVYGQASKK 282

Query: 102 LYTGNQHQHQKLSKEVHDSSKGEEN---------------DDDEFFKPKVK-GNKEEAYE 145
           L  GN    ++ S E     KG++                D  +FFK +++  + E+  +
Sbjct: 283 LDEGNDSSAEESSDEEFFVPKGQKKQAKNESTSFDDMDAEDYSKFFKTELRDWSDEDLIK 342

Query: 146 SIRDRFVMGDWSKAAQKNQVSKGKSEDDDSDDAVYGDYEDLETCEKHEGQC-EDNSGSEG 204
           SIRDRFV G+WSKAA + Q     +E+D  D+ V GD+EDLET E H  +  E+ SG+ G
Sbjct: 343 SIRDRFVTGNWSKAALRGQEI---NENDVDDEEVDGDFEDLETGEVHTSKAYENTSGNGG 399

Query: 205 IENEDESAVEEWRLKKLTLRAKFDAQYPF 233
              +D+ A+EE RLKKL L+AKFDA+YPF
Sbjct: 400 THKQDDLAMEERRLKKLALKAKFDAEYPF 428

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242041043|ref|XP_002467916.1| hypothetical protein SORBIDRAFT_01g036270 [Sorghum bicolor] gi|241921770|gb|EER94914.1| hypothetical protein SORBIDRAFT_01g036270 [Sorghum bicolor]

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/110 (45%), Positives = 71/110 (64%), Gaps = 13/110 (11%)

Query: 127 DDDEFFKPKVK-GNKEEAYESIRDRFVMGDWSKAAQKNQVSKGKSEDDDSDDA--VYGDY 183
           D  +FFK +++  + E+  +SIRDRFV G+WSKAA +     G+  D++ +D   +YGD+
Sbjct: 625 DCSKFFKAELRDWSNEDLIKSIRDRFVTGNWSKAALR-----GQDADENGEDGEEIYGDF 679

Query: 184 EDLETCEKHEGQCEDNSGSEGIENEDESAVEEWRLKKLTLRAKFDAQYPF 233
           EDLET E H  Q  +++     E +D+  VEE RLKKL LRAKFDAQ  +
Sbjct: 680 EDLETGEVHMSQAVEDA-----ERKDDPEVEERRLKKLALRAKFDAQLTY 724

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302760207|ref|XP_002963526.1| hypothetical protein SELMODRAFT_165786 [Selaginella moellendorffii] gi|300168794|gb|EFJ35397.1| hypothetical protein SELMODRAFT_165786 [Selaginella moellendorffii]

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 60/93 (64%), Gaps = 19/93 (20%)

Query: 141 EEAYESIRDRFVMGDWSKAAQKNQVSKGKSEDDDSDDAVYGDYEDLETCEKHEGQCEDNS 200
           +E  E+IRDRFV GDW+KA+Q+    KG+ E+D +   VYGD+EDLET E+H G  E++ 
Sbjct: 609 QEVIEAIRDRFVTGDWNKASQRQ---KGEVEEDGT---VYGDFEDLETGEQH-GAAENHE 661

Query: 201 GSEGIENEDESAVEEWRLKKLTLRAKFDAQYPF 233
            +E             RLKKL LRA FDA+YPF
Sbjct: 662 AAER------------RLKKLALRAAFDAKYPF 682

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302799593|ref|XP_002981555.1| hypothetical protein SELMODRAFT_179002 [Selaginella moellendorffii] gi|300150721|gb|EFJ17370.1| hypothetical protein SELMODRAFT_179002 [Selaginella moellendorffii]

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 60/93 (64%), Gaps = 19/93 (20%)

Query: 141 EEAYESIRDRFVMGDWSKAAQKNQVSKGKSEDDDSDDAVYGDYEDLETCEKHEGQCEDNS 200
           +E  E+IRDRFV GDW+KA+Q+    KG+ E+   DD VYGD+EDLET E+H        
Sbjct: 605 QEVIEAIRDRFVTGDWNKASQRQ---KGEVEE---DDLVYGDFEDLETGEQHVAA----- 653

Query: 201 GSEGIENEDESAVEEWRLKKLTLRAKFDAQYPF 233
                EN +++   E RLKKL LRA FDA+YPF
Sbjct: 654 -----ENHEDA---ERRLKKLALRAAFDAKYPF 678

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357112362|ref|XP_003557978.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Brachypodium distachyon]

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 71/107 (66%), Gaps = 7/107 (6%)

Query: 127 DDDEFFKPKVK-GNKEEAYESIRDRFVMGDWSKAAQKNQVSKGKSEDDDSDDAVYGDYED 185
           D  +FFK ++   + E+  +SIRDRFV GDWSKA+ +    +   E+ + D+ + GD+ED
Sbjct: 619 DYSKFFKAELNDWSDEDLAKSIRDRFVTGDWSKASLRG---REIDENGEGDEEIDGDFED 675

Query: 186 LETCEKHEGQCEDN-SGSEGIENEDESAVEEWRLKKLTLRAKFDAQY 231
           LET E H+ Q  +N SG  G+  +DE  VEE RLKKL L+AKFD++Y
Sbjct: 676 LETGEVHKSQAAENGSGKPGV--QDELKVEELRLKKLALKAKFDSEY 720

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	99.14

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=2.8e-11  Score=118.81  Aligned_cols=148  Identities=20%  Similarity=0.277  Sum_probs=89.2

Q ss_pred             CCCCchhhhhccchhhhcccccc-ccc---cc-ccCCCCCccccc--c-cccCCC---CCCCCCCCCCCcccCCCCCch-
Q 043057           74 DDNDTVDNQLSSGTEEREDNDDA-RIS---FS-LYTGNQHQHQKL--S-KEVHDS---SKGEENDDDEFFKPKVKGNKE-  141 (236)
Q Consensus        74 dd~~~~~kWKenl~a~ra~~~~~-rr~---~k-IY~~~~~p~~~~--~-~ed~~~---~~~e~~ddddFFk~k~~~~~~-  141 (236)
                      ++.++-.+||+.| |.+++.+.+ +|.   .+ ||+.+++|.+|+  | |++..+   +.+..++.++||++....+.. 
T Consensus       473 dese~~~~w~~~~-a~kl~~sqs~kr~~ni~ki~y~e~lspeeci~e~kge~~~s~e~~~v~~D~~edff~vsk~~n~~~  551 (1077)
T COG5192         473 DESEGNLRWKEGL-ASKLAYSQSGKRGRNIQKIFYDESLSPEECIEEYKGESAKSSESDLVVQDEPEDFFDVSKVANESI  551 (1077)
T ss_pred             ccccccchhhhhh-hhhhhhhhcccccccccceeccccCCHHHHHHHhccccccccccccccccCchhhhhhhhhccccc
Confidence            3346778999999 999886554 332   78 999999999999  8 776222   234445667899954333222 


Q ss_pred             -------------------HHHHHHhhhhccCCcchhhh-hhhccCCCCCCCCCcccccCCCccccccccccCCC-CCCC
Q 043057          142 -------------------EAYESIRDRFVMGDWSKAAQ-KNQVSKGKSEDDDSDDAVYGDYEDLETCEKHEGQC-EDNS  200 (236)
Q Consensus       142 -------------------e~~dsIR~rFVTG~w~~~~~-~~~~~~~~~~~eddddE~~GDFEDLEtGE~~~~~~-~~~~  200 (236)
                                         ..+..|+.||+++....... ...+         -.+...|+||||+..+...... ++..
T Consensus       552 s~~~ek~~~~~fe~L~kkw~s~~~lk~RF~~~~~lds~eg~EEl---------~qd~E~gn~ed~~d~e~~~d~e~ees~  622 (1077)
T COG5192         552 SSNHEKLMESEFEELKKKWSSLAQLKSRFQKDATLDSIEGEEEL---------IQDDEKGNFEDLEDEENSSDNEMEESR  622 (1077)
T ss_pred             ccchhhhchhHHHHHHHHHhhHHHHHHHhhcccccccccchhhh---------hhchhccCcccccccccccccchhhcc
Confidence                               66889999999987653211 0011         0122358999999766543211 1111


Q ss_pred             CC----CCCCCcchhHHHHHHH----HHHHHHHhhhhcC
Q 043057          201 GS----EGIENEDESAVEEWRL----KKLTLRAKFDAQY  231 (236)
Q Consensus       201 ~~----~~~~~~de~~~e~e~~----KkekLK~kFeee~  231 (236)
                      ++    ...+..++-+++.+++    ||++|+.+|+.+.
T Consensus       623 G~s~t~~~~e~~~e~~~e~ErE~na~kKE~lr~~Fe~ee  661 (1077)
T COG5192         623 GSSVTAENEESADEVDYETEREENARKKEELRGNFELEE  661 (1077)
T ss_pred             CCcccccchhhccccchHHHhhhhhhhhhhhhcceeehh
Confidence            10    0011112223443333    5799999998776

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00