Citrus Sinensis ID: 043060
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 707 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LN01 | 741 | Pentatricopeptide repeat- | yes | no | 1.0 | 0.954 | 0.624 | 0.0 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.978 | 0.937 | 0.410 | 1e-174 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.943 | 0.961 | 0.407 | 1e-157 | |
| Q9SR82 | 685 | Putative pentatricopeptid | no | no | 0.950 | 0.981 | 0.418 | 1e-156 | |
| O23337 | 722 | Pentatricopeptide repeat- | no | no | 0.961 | 0.941 | 0.409 | 1e-155 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.851 | 0.970 | 0.404 | 1e-152 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.925 | 0.914 | 0.393 | 1e-149 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.927 | 0.753 | 0.403 | 1e-146 | |
| Q9FND7 | 612 | Putative pentatricopeptid | no | no | 0.854 | 0.986 | 0.393 | 1e-146 | |
| Q683I9 | 573 | Pentatricopeptide repeat- | no | no | 0.756 | 0.933 | 0.442 | 1e-146 |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/741 (62%), Positives = 574/741 (77%), Gaps = 34/741 (4%)
Query: 1 MALPPSSLTLSPSI--LHF-PPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTG 57
M L S LT+ S HF P SSDPPY ++N PSL+LL C +Q+++ +H+Q+IK G
Sbjct: 1 MMLSCSPLTVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIG 60
Query: 58 LHNTQFALSKLIEICAVSP-FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIK 116
LHNT +ALSKLIE C +SP F L YA+ VF+TI+EPN +IWN + RGH+LSS PV A+K
Sbjct: 61 LHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALK 120
Query: 117 FYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYA 176
YV MI G +PN+YTFPF+LKSCAK A EG+QIH HVLKLG + D +VHTSLI+MY
Sbjct: 121 LYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYV 180
Query: 177 QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE---------- 226
QNG LE A VF+KS RD VSYTALI GYASRGY+++A++LFDE+P+++
Sbjct: 181 QNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISG 240
Query: 227 -------------------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
N P+EST+VTV+SACA GS+ELG V I+ HG GSN
Sbjct: 241 YAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSN 300
Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
L + NALID+YSKCG+L A LFE + +DVISWN +IGGYTH + YKEAL+LF++ML+
Sbjct: 301 LKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 360
Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS-LWTSLIDMYAKCGNI 386
S PNDVT LS+LPACA+LGA+D+G+WIH YIDK + + N S L TSLIDMYAKCG+I
Sbjct: 361 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDI 420
Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
+AA QVF+ + +K+L+SWNAMI G AMHG+AD + LFSRM G+QPDDITFVG+LSAC
Sbjct: 421 EAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSAC 480
Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
+H+G+LD+GR F M QDYK++PKL+HYGCM+DLLG +GLF EAE ++ MEM+PD I
Sbjct: 481 SHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVI 540
Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
W SLL AC++HG +ELGES A++L+++EPENPG+YVLLSN+YA AGRW++VA R LND
Sbjct: 541 WCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLND 600
Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYD 626
KGMKKVPGCSSIE+ SVVHEF++GDK HP+++ IY ML+E++ LLEK+GFVPDTSEVL +
Sbjct: 601 KGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQE 660
Query: 627 MDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
M+EEWKEGAL HHSEKLAIA+GLISTKPGT + IVKNLRVC NCH ATKLISKI+ REII
Sbjct: 661 MEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREII 720
Query: 687 ARDRNRFHHFKDGNCSCNDYW 707
ARDR RFHHF+DG CSCNDYW
Sbjct: 721 ARDRTRFHHFRDGVCSCNDYW 741
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 613 bits (1580), Expect = e-174, Method: Compositional matrix adjust.
Identities = 300/731 (41%), Positives = 465/731 (63%), Gaps = 39/731 (5%)
Query: 13 SILHFPPSSDPPYKLLQNQPS--LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIE 70
S+ P S+P N+ S ++L+ +C +++ +KQ H +I+TG + ++ SKL
Sbjct: 11 SLPRHPNFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFA 70
Query: 71 ICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMIL-SGFVPN 129
+ A+S F L YA VF+ I +PN WN +IR ++ PV++I ++ M+ S PN
Sbjct: 71 MAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPN 130
Query: 130 TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN 189
YTFPF++K+ A++S++S G+ +H +K + SD FV SLI+ Y G+L+SA VF
Sbjct: 131 KYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFT 190
Query: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
+D VS+ ++I G+ +G D A +LF +M E+ + T+V VLSACA + +L
Sbjct: 191 TIKEKDVVSWNSMINGFVQKGSPDKALELFKKM--ESEDVKASHVTMVGVLSACAKIRNL 248
Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
E G VCS IE + + NL + NA++DMY+KCG + A+ LF+++E++D ++W M+ GY
Sbjct: 249 EFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGY 308
Query: 310 THTSDYK-------------------------------EALMLFRQM-LQSNIEPNDVTF 337
+ DY+ EAL++F ++ LQ N++ N +T
Sbjct: 309 AISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITL 368
Query: 338 LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
+S L ACA +GAL+LG+WIH+YI K+ ++ N + ++LI MY+KCG+++ + +VF+ +
Sbjct: 369 VSTLSACAQVGALELGRWIHSYIKKHGIRM-NFHVTSALIHMYSKCGDLEKSREVFNSVE 427
Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
+ + W+AMI GLAMHG ++A+ +F +M ++P+ +TF V AC+H GL+D
Sbjct: 428 KRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAES 487
Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
F+ M +Y I P+ +HY C+VD+LGR+G ++A ++ M + P ++W +LLGAC++H
Sbjct: 488 LFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIH 547
Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
L L E LLELEP N GA+VLLSN+YA G+W++V+ +R + G+KK PGCSS
Sbjct: 548 ANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSS 607
Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM-DEEWKEGAL 636
IE+ ++HEFL GD HP S+ +Y L E+ L+ +G+ P+ S+VL + +EE KE +L
Sbjct: 608 IEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSL 667
Query: 637 SHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHF 696
+ HSEKLAI YGLIST+ IR++KNLRVCG+CHS KLIS++++REII RDR RFHHF
Sbjct: 668 NLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHF 727
Query: 697 KDGNCSCNDYW 707
++G CSCND+W
Sbjct: 728 RNGQCSCNDFW 738
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 554 bits (1428), Expect = e-157, Method: Compositional matrix adjust.
Identities = 275/675 (40%), Positives = 432/675 (64%), Gaps = 8/675 (1%)
Query: 35 ALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPN 94
+L+ T+ +KQ+H++++ GL + F ++KLI A S FGD+++A VF+ + P
Sbjct: 26 SLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIH--ASSSFGDITFARQVFDDLPRPQ 83
Query: 95 QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154
WN IIRG+S ++ A+ Y M L+ P+++TFP +LK+C+ +S + G+ +HA
Sbjct: 84 IFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHA 143
Query: 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL--RDAVSYTALITGYASRGYL 212
V +LG ++D FV LI +YA+ L SAR VF L R VS+TA+++ YA G
Sbjct: 144 QVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEP 203
Query: 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272
+A ++F +M R+ + P+ +V+VL+A + L+ G + + + GL +
Sbjct: 204 MEALEIFSQM--RKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLI 261
Query: 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP 332
+L MY+KCG + A+ LF+ ++ ++I WN MI GY +EA+ +F +M+ ++ P
Sbjct: 262 SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321
Query: 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392
+ ++ S + ACA +G+L+ + ++ Y+ ++ + ++V + ++LIDM+AKCG+++ A V
Sbjct: 322 DTISITSAISACAQVGSLEQARSMYEYVGRSDYR-DDVFISSALIDMFAKCGSVEGARLV 380
Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
FD + + W+AMI G +HG+A +A+SL+ M G+ P+D+TF+G+L ACNH+G++
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMV 440
Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
G +FN M D+KI+P+ QHY C++DLLGRAG D+A ++K M ++P +W +LL
Sbjct: 441 REGWWFFNRM-ADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLS 499
Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
AC+ H +ELGE A+ L ++P N G YV LSN+YA A WD VA +R R+ +KG+ K
Sbjct: 500 ACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKD 559
Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
GCS +EV + F VGDK HP+ + I ++ I++ L++ GFV + L+D+++E
Sbjct: 560 VGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEA 619
Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
E L HSE++AIAYGLIST GT +RI KNLR C NCH+ATKLISK+ +REI+ RD NR
Sbjct: 620 EETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNR 679
Query: 693 FHHFKDGNCSCNDYW 707
FHHFKDG CSC DYW
Sbjct: 680 FHHFKDGVCSCGDYW 694
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 283/677 (41%), Positives = 414/677 (61%), Gaps = 5/677 (0%)
Query: 31 QPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
Q L+S + ++KQ+H +I LH+ F ++ L++ F Y+ L+F
Sbjct: 14 QQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLF--FRQTKYSYLLFSHT 71
Query: 91 REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
+ PN ++N++I G + + ++ + G + +TFP +LK+C + S+ G
Sbjct: 72 QFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGI 131
Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
+H+ V+K G D TSL+++Y+ +G L A +F++ R V++TAL +GY + G
Sbjct: 132 DLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSG 191
Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
+A LF +M E P+ +V VLSAC H+G L+ G W+ +E + N V
Sbjct: 192 RHREAIDLFKKMV--EMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFV 249
Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
L+++Y+KCG + KAR +F+S+ ++D+++W+ MI GY S KE + LF QMLQ N+
Sbjct: 250 RTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENL 309
Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
+P+ + + L +CA LGALDLG+W + ID+ H+ L N+ + +LIDMYAKCG +
Sbjct: 310 KPDQFSIVGFLSSCASLGALDLGEWGISLIDR-HEFLTNLFMANALIDMYAKCGAMARGF 368
Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
+VF M K + NA ISGLA +G + ++F + G+ PD TF+G+L C HAG
Sbjct: 369 EVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAG 428
Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
L+ G ++FNA+ Y + ++HYGCMVDL GRAG+ D+A L+ M M+P+A +W +L
Sbjct: 429 LIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGAL 488
Query: 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570
L CR+ +L E+V K L+ LEP N G YV LSN+Y+ GRWD+ A +R +N KGMK
Sbjct: 489 LSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMK 548
Query: 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
K+PG S IE+ VHEFL DK HP S IY L+++ + GFVP T V +D++EE
Sbjct: 549 KIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEE 608
Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
KE L +HSEKLA+A GLIST G IR+VKNLRVCG+CH KLISKI REI+ RD
Sbjct: 609 EKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDN 668
Query: 691 NRFHHFKDGNCSCNDYW 707
NRFH F +G+CSCNDYW
Sbjct: 669 NRFHCFTNGSCSCNDYW 685
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 550 bits (1417), Expect = e-155, Method: Compositional matrix adjust.
Identities = 296/723 (40%), Positives = 437/723 (60%), Gaps = 43/723 (5%)
Query: 23 PPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY 82
PP L LS C ++ +IKQ+H+ I++T +++ + L + S +LSY
Sbjct: 5 PPIASTAANTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSF--LFNLSVSSSSINLSY 62
Query: 83 ALLVFETI-REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCA 141
AL VF +I P +++N +R S SS P I FY R+ G + ++F ILK+ +
Sbjct: 63 ALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVS 122
Query: 142 KISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTA 201
K+SA+ EG ++H K+ DPFV T ++MYA G + AR VF++ S RD V++
Sbjct: 123 KVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNT 182
Query: 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCS-LIE 260
+I Y G +D+A +LF+EM ++ N +P+E + ++SAC G++ + LIE
Sbjct: 183 MIERYCRFGLVDEAFKLFEEM--KDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIE 240
Query: 261 GH----------------GLG--------------SNLHVTNALIDMYSKCGDLVKARDL 290
G G NL V+ A++ YSKCG L A+ +
Sbjct: 241 NDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVI 300
Query: 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350
F+ EK+D++ W MI Y + +EAL +F +M S I+P+ V+ SV+ ACA LG L
Sbjct: 301 FDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGIL 360
Query: 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410
D KW+H+ I N + + +S+ +LI+MYAKCG + A VF+ M + + SW++MI+
Sbjct: 361 DKAKWVHSCIHVNGLE-SELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINA 419
Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470
L+MHG+A ALSLF+RM E ++P+++TFVGVL C+H+GL++ G++ F +M +Y I+P
Sbjct: 420 LSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITP 479
Query: 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530
KL+HYGCMVDL GRA L EA ++++M + + IW SL+ ACR+HG LELG+ AK +
Sbjct: 480 KLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRI 539
Query: 531 LELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVG 590
LELEP++ GA VL+SN+YA RW+DV IR + +K + K G S I+ HEFL+G
Sbjct: 540 LELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIG 599
Query: 591 DKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLI 650
DK H QS IY LDE+ + L+ +G+VPD VL D++EE K+ + HSEKLA+ +GL+
Sbjct: 600 DKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLM 659
Query: 651 STKPGT------TIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCN 704
+ + IRIVKNLRVC +CH KL+SK++ REII RDR RFH +K+G CSC
Sbjct: 660 NEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCR 719
Query: 705 DYW 707
DYW
Sbjct: 720 DYW 722
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 538 bits (1385), Expect = e-152, Method: Compositional matrix adjust.
Identities = 274/677 (40%), Positives = 401/677 (59%), Gaps = 75/677 (11%)
Query: 33 SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGD-LSYALLVFETIR 91
+++ L +C+ + +KQ+H++++KTGL +A++K + C S D L YA +VF+
Sbjct: 17 TMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFD 76
Query: 92 EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151
P+ +WN +IRG S S P ++ Y RM+ S N YTFP +LK+C+ +SA E Q
Sbjct: 77 RPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQ 136
Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
IHA + KLG E+D +YA N +LI YA G
Sbjct: 137 IHAQITKLGYEND---------VYAVN----------------------SLINSYAVTGN 165
Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
A LFD +P P++ + W
Sbjct: 166 FKLAHLLFDRIP------EPDDVS------------------W----------------- 184
Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
N++I Y K G + A LF + +++ ISW MI GY KEAL LF +M S++E
Sbjct: 185 NSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVE 244
Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
P++V+ + L ACA LGAL+ GKWIH+Y++K ++++V L LIDMYAKCG ++ A +
Sbjct: 245 PDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSV-LGCVLIDMYAKCGEMEEALE 303
Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
VF + K++ +W A+ISG A HG +A+S F M G++P+ ITF VL+AC++ GL
Sbjct: 304 VFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGL 363
Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
++ G+ F +M +DY + P ++HYGC+VDLLGRAGL DEA+ ++ M +KP+A IW +LL
Sbjct: 364 VEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALL 423
Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
ACR+H +ELGE + + L+ ++P + G YV +N++A +WD A R + ++G+ K
Sbjct: 424 KACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAK 483
Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDM-DEE 630
VPGCS+I + HEFL GD+ HP+ + I + LE++G+VP+ E+L D+ D++
Sbjct: 484 VPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDD 543
Query: 631 WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 690
+E + HSEKLAI YGLI TKPGT IRI+KNLRVC +CH TKLISKI+ R+I+ RDR
Sbjct: 544 EREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDR 603
Query: 691 NRFHHFKDGNCSCNDYW 707
RFHHF+DG CSC DYW
Sbjct: 604 TRFHHFRDGKCSCGDYW 620
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 528 bits (1359), Expect = e-149, Method: Compositional matrix adjust.
Identities = 275/698 (39%), Positives = 414/698 (59%), Gaps = 44/698 (6%)
Query: 47 KQVHSQIIKT-GLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH 105
KQ+H+Q I+T L +T S I I + L ALL+F+T++ P + W ++IR
Sbjct: 25 KQLHAQFIRTQSLSHT----SASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCF 80
Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDP 165
+ S A+ +V M SG P+ FP +LKSC + + G+ +H +++LG++ D
Sbjct: 81 TDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDL 140
Query: 166 FVHTSLINMYAQ-----------------------NGE-------------LESARLVFN 189
+ +L+NMYA+ +G+ ++S R VF
Sbjct: 141 YTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFE 200
Query: 190 KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL 249
+D VSY +I GYA G +DA ++ EM + P+ T+ +VL + +
Sbjct: 201 VMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGT--TDLKPDSFTLSSVLPIFSEYVDV 258
Query: 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309
G + + G+ S++++ ++L+DMY+K + + +F + RD ISWN ++ GY
Sbjct: 259 IKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGY 318
Query: 310 THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN 369
Y EAL LFRQM+ + ++P V F SV+PACA+L L LGK +H Y+ + +N
Sbjct: 319 VQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG-SN 377
Query: 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429
+ + ++L+DMY+KCGNIKAA ++FD M SW A+I G A+HG +A+SLF M
Sbjct: 378 IFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKR 437
Query: 430 EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489
+G++P+ + FV VL+AC+H GL+D YFN+M + Y ++ +L+HY + DLLGRAG +
Sbjct: 438 QGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLE 497
Query: 490 EAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549
EA + M ++P ++W++LL +C VH LEL E VA+ + ++ EN GAYVL+ NMYA
Sbjct: 498 EAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYA 557
Query: 550 GAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDA 609
GRW ++A +R R+ KG++K P CS IE+ + H F+ GD+ HP I E L +
Sbjct: 558 SNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVME 617
Query: 610 LLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGN 669
+EK G+V DTS VL+D+DEE K L HSE+LA+A+G+I+T+PGTTIR+ KN+R+C +
Sbjct: 618 QMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTD 677
Query: 670 CHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
CH A K ISKI REII RD +RFHHF GNCSC DYW
Sbjct: 678 CHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 520 bits (1339), Expect = e-146, Method: Compositional matrix adjust.
Identities = 267/662 (40%), Positives = 403/662 (60%), Gaps = 6/662 (0%)
Query: 47 KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
+Q+H I+K+G + L+ + D A VF+ + E + + WN+II G+
Sbjct: 215 EQLHGFILKSGFGERNSVGNSLVAFYLKNQRVD--SARKVFDEMTERDVISWNSIINGYV 272
Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
+ + +V+M++SG + T + CA IS G+ +H+ +K +
Sbjct: 273 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDR 332
Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
+L++MY++ G+L+SA+ VF + S R VSYT++I GYA G +A +LF+EM E
Sbjct: 333 FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME--E 390
Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
E P+ TV VL+ CA L+ G V I+ + LG ++ V+NAL+DMY+KCG + +
Sbjct: 391 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQE 450
Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN-IEPNDVTFLSVLPACA 345
A +F + +D+ISWN +IGGY+ EAL LF +L+ P++ T VLPACA
Sbjct: 451 AELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACA 510
Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
L A D G+ IH YI +N ++ + SL+DMYAKCG + A +FD + K L SW
Sbjct: 511 SLSAFDKGREIHGYIMRNGY-FSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWT 569
Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
MI+G MHG +A++LF++M G++ D+I+FV +L AC+H+GL+D G ++FN M +
Sbjct: 570 VMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHE 629
Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
KI P ++HY C+VD+L R G +A ++ M + PDA IW +LL CR+H ++L E
Sbjct: 630 CKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEK 689
Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
VA+ + ELEPEN G YVL++N+YA A +W+ V +R R+ +G++K PGCS IE+ V+
Sbjct: 690 VAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVN 749
Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
F+ GD +P++++I L ++ A + + G+ P T L D +E KE AL HSEKLA+
Sbjct: 750 IFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAM 809
Query: 646 AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
A G+IS+ G IR+ KNLRVCG+CH K +SK+ REI+ RD NRFH FKDG+CSC
Sbjct: 810 ALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRG 869
Query: 706 YW 707
+W
Sbjct: 870 FW 871
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 519 bits (1337), Expect = e-146, Method: Compositional matrix adjust.
Identities = 267/679 (39%), Positives = 394/679 (58%), Gaps = 75/679 (11%)
Query: 31 QPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETI 90
P++ALL + ++Q+H+++ G + ++ A+S L YA + +
Sbjct: 7 HPAIALLDSGITFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRS 66
Query: 91 REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG--FVPNTYTFPFILKSCAKISAISE 148
+P N++IR H S P + FY R++ SG P+ YT F++++C +
Sbjct: 67 EKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRET 126
Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
G Q+H ++ G ++DP V T LI++Y A
Sbjct: 127 GLQVHGMTIRRGFDNDPHVQTGLISLY-------------------------------AE 155
Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL 268
G LD ++F+ +P P+ +++ACA
Sbjct: 156 LGCLDSCHKVFNSIP------CPDFVCRTAMVTACA------------------------ 185
Query: 269 HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
+CGD+V AR LFE + +RD I+WN MI GY + +EAL +F M
Sbjct: 186 -----------RCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLE 234
Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
++ N V +SVL AC LGALD G+W H+YI++N K+ V L T+L+D+YAKCG+++
Sbjct: 235 GVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKIT-VRLATTLVDLYAKCGDMEK 293
Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
A +VF GM K + +W++ ++GLAM+G +K L LFS M +G+ P+ +TFV VL C+
Sbjct: 294 AMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSV 353
Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
G +D G+++F++M ++ I P+L+HYGC+VDL RAG ++A ++++ M MKP AA+W+
Sbjct: 354 VGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWS 413
Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
SLL A R++ LELG +K +LELE N GAYVLLSN+YA + WD+V+ +R + KG
Sbjct: 414 SLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKG 473
Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
++K PGCS +EV VHEF VGDK HP+ I + +I L +G+ DT+ V++D+D
Sbjct: 474 VRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDID 533
Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
EE KE AL HSEK AIA+G++S K IRIVKNLRVCG+CH + +ISKIFNREII R
Sbjct: 534 EEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVR 593
Query: 689 DRNRFHHFKDGNCSCNDYW 707
DRNRFHHFKDG+CSCN +W
Sbjct: 594 DRNRFHHFKDGHCSCNGFW 612
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 519 bits (1337), Expect = e-146, Method: Compositional matrix adjust.
Identities = 276/624 (44%), Positives = 386/624 (61%), Gaps = 89/624 (14%)
Query: 97 IWNNIIRG--HSLSS----SPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
+WN IIR H++SS SP I Y+RM P+ +TFPF+L S + G+
Sbjct: 26 LWNIIIRAIVHNVSSPQRHSP---ISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQ 82
Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210
+ HA +L GL+ DPFV TSL+NMY+ S G
Sbjct: 83 RTHAQILLFGLDKDPFVRTSLLNMYS-------------------------------SCG 111
Query: 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV 270
L A+++FD+ GS +L W
Sbjct: 112 DLRSAQRVFDDS------------------------GSKDLPAW---------------- 131
Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML---- 326
N++++ Y+K G + AR LF+ + +R+VISW+ +I GY YKEAL LFR+M
Sbjct: 132 -NSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKP 190
Query: 327 -QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385
++ + PN+ T +VL AC LGAL+ GKW+HAYIDK H +++ + L T+LIDMYAKCG+
Sbjct: 191 NEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEID-IVLGTALIDMYAKCGS 249
Query: 386 IKAAEQVFDGMGYKT-LASWNAMISGLAMHGKADKALSLFSRMI-GEGLQPDDITFVGVL 443
++ A++VF+ +G K + +++AMI LAM+G D+ LFS M + + P+ +TFVG+L
Sbjct: 250 LERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGIL 309
Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
AC H GL++ G+ YF MI+++ I+P +QHYGCMVDL GR+GL EAE+ + +M M+PD
Sbjct: 310 GACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPD 369
Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
IW SLL R+ G ++ E K L+EL+P N GAYVLLSN+YA GRW +V IR
Sbjct: 370 VLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHE 429
Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
+ KG+ KVPGCS +EV VVHEF+VGD+ +S+ IY MLDEI L ++G+V DT EV
Sbjct: 430 MEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEV 489
Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
L D++E+ KE ALS+HSEKLAIA+ L+ T+PGT +RI+KNLR+CG+CH K+ISK+F+R
Sbjct: 490 LLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSR 549
Query: 684 EIIARDRNRFHHFKDGNCSCNDYW 707
EI+ RD NRFHHF+DG+CSC D+W
Sbjct: 550 EIVVRDCNRFHHFRDGSCSCRDFW 573
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 707 | ||||||
| 225423499 | 738 | PREDICTED: pentatricopeptide repeat-cont | 0.991 | 0.949 | 0.767 | 0.0 | |
| 224141765 | 736 | predicted protein [Populus trichocarpa] | 0.992 | 0.953 | 0.714 | 0.0 | |
| 449464596 | 734 | PREDICTED: pentatricopeptide repeat-cont | 0.978 | 0.942 | 0.691 | 0.0 | |
| 356513929 | 736 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.948 | 0.658 | 0.0 | |
| 147798405 | 748 | hypothetical protein VITISV_032085 [Viti | 0.896 | 0.847 | 0.716 | 0.0 | |
| 357477961 | 738 | Pentatricopeptide repeat protein [Medica | 0.985 | 0.944 | 0.667 | 0.0 | |
| 297849104 | 741 | pentatricopeptide repeat-containing prot | 0.994 | 0.948 | 0.624 | 0.0 | |
| 15223099 | 741 | pentatricopeptide repeat-containing prot | 1.0 | 0.954 | 0.624 | 0.0 | |
| 347954516 | 710 | organelle transcript processing 82, part | 0.960 | 0.956 | 0.621 | 0.0 | |
| 347954522 | 710 | organelle transcript processing 82, part | 0.960 | 0.956 | 0.618 | 0.0 |
| >gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1168 bits (3021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/730 (76%), Positives = 619/730 (84%), Gaps = 29/730 (3%)
Query: 7 SLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALS 66
SL + P LHF P+SDPPYKLLQN PSL LLS C + QN+KQ+HSQIIKTGLHNTQFALS
Sbjct: 9 SLVMPPPTLHFQPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALS 68
Query: 67 KLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGF 126
KLIE CA+SPFG+LSYALL+FE+I +PNQ IWN +IRG+SLSSSPV AI FYVRM+L G
Sbjct: 69 KLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGV 128
Query: 127 VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
PN+YTFPF+LKSCAK+ A EGKQIH HVLKLGLESDPFVHTSLINMYAQNGEL A L
Sbjct: 129 EPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAEL 188
Query: 187 VFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE------------------- 227
VF+KSSLRDAVS+TALITGY RG LDDAR+LF+E+P+R+
Sbjct: 189 VFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEA 248
Query: 228 ----------NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277
N PNEST+VTVLSACA GSLELGNWV S IE HGLGSNL + NALIDM
Sbjct: 249 LAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDM 308
Query: 278 YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTF 337
YSKCGDL KARDLFE I ++D+ISWNVMIGGY+H + YKEAL LFR+M QSN+EPNDVTF
Sbjct: 309 YSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTF 368
Query: 338 LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
+S+LPACAYLGALDLGKWIHAYIDK L N SLWTSLIDMYAKCGNI+AA+QVF GM
Sbjct: 369 VSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMK 428
Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
K+L SWNAMISGLAMHG A+ AL LF +M EG +PDDITFVGVLSAC+HAGL+++GRQ
Sbjct: 429 PKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQ 488
Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
F++M++DY ISPKLQHYGCM+DLLGRAGLFDEAEAL+K MEMKPD AIW SLLGACRVH
Sbjct: 489 CFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVH 548
Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
G +ELGE AKHL ELEPENPGAYVLLSN+YA AGRWDDVA IRT+LNDKGMKKVPGCSS
Sbjct: 549 GNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSS 608
Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALS 637
IEV SVVHEFLVGDKVH QS+ IY+MLDEID LLEK+G VPDTSEVLYDMDEEWKEG+LS
Sbjct: 609 IEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLS 668
Query: 638 HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 697
HHSEKLAIA+GLISTKP TTIRIVKNLRVCGNCHSA KLISKIFNREIIARDRNRFHHFK
Sbjct: 669 HHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFK 728
Query: 698 DGNCSCNDYW 707
DG+CSC DYW
Sbjct: 729 DGSCSCMDYW 738
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa] gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1093 bits (2827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/738 (71%), Positives = 601/738 (81%), Gaps = 36/738 (4%)
Query: 1 MALPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHN 60
+A P S+L +L F S PPYKL+ + PSL LLS C +Q +KQ+HSQIIKTGLHN
Sbjct: 4 LASPVSTL----QVLSFSDPS-PPYKLVHDHPSLTLLSNCKTLQTLKQIHSQIIKTGLHN 58
Query: 61 TQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVR 120
T FALSKLIE CAVSP GDLSYAL +F+TIR PN VIWN++IRG S S SP +A+++YV
Sbjct: 59 THFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVH 118
Query: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180
MI SG PN YTFP I KSC KI EGKQ+HAHVLKLGLE + FVHTSLINMYAQNGE
Sbjct: 119 MISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGE 178
Query: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE-------------- 226
L +ARLVF+KSS+RDAVS+TALITGYAS+G+LD+AR+LFDE+P+R+
Sbjct: 179 LVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQS 238
Query: 227 ---------------ENFVPNESTVVTVLSACAHMGS-LELGNWVCSLIEGHGLGSNLHV 270
PN ST+++VLSACA GS L+LGNWV S IE GLGSN+ +
Sbjct: 239 GRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRL 298
Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
N LIDMY KCGDL +A +LFE I+ ++V+SWNVMIGGYTH S YKEAL LFR+M+QSNI
Sbjct: 299 VNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNI 358
Query: 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL-NNVSLWTSLIDMYAKCGNIKAA 389
+PNDVTFLS+LPACA LGALDLGKW+HAY+DKN + + N V+LWTSLIDMYAKCG++ A
Sbjct: 359 DPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVA 418
Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449
+++FD M K+LA+WNAMISG AMHG D AL LFSRM EG PDDITFVGVL+AC HA
Sbjct: 419 KRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHA 478
Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509
GLL +GR+YF++MIQDYK+SPKL HYGCM+DL GRAGLFDEAE L+K MEMKPD AIW S
Sbjct: 479 GLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCS 538
Query: 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
LLGACR+H R+EL ESVAKHL ELEPENP AYVLLSN+YAGAGRW+DVA IRTRLND M
Sbjct: 539 LLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRM 598
Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
KKVPGCSSIEV SVVHEFLVGDKVHPQS IY+MLDEID LEK+GFVPDTSEVLYDMDE
Sbjct: 599 KKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDE 658
Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
EWKEG LSHHSEKLAIA+GLISTKPGTTIRI+KNLRVCGNCHSATKLISKIFNREIIARD
Sbjct: 659 EWKEGVLSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCGNCHSATKLISKIFNREIIARD 718
Query: 690 RNRFHHFKDGNCSCNDYW 707
RNRFHHFKDG+CSC DYW
Sbjct: 719 RNRFHHFKDGSCSCKDYW 736
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Cucumis sativus] gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1045 bits (2702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/722 (69%), Positives = 593/722 (82%), Gaps = 30/722 (4%)
Query: 15 LHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAV 74
H PSSDPPY++LQ PSL LLSKC +++ KQ+H+ IIKTGLHNT FALSKLIE AV
Sbjct: 14 FHVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAV 73
Query: 75 SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFP 134
S GD+SYA+ +F +I EPN IWN++IRG S+S SP +A+ F+VRMI SG PN+YTFP
Sbjct: 74 SRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFP 133
Query: 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR 194
F+LKSCAK+++ EGKQIHAHVLKLG SD F+HTSLINMYAQ+GE+ +A+LVF++S+ R
Sbjct: 134 FLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFR 193
Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPI-----------------------------R 225
DA+S+TALI GYA GY+D ARQLFDEMP+ R
Sbjct: 194 DAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMR 253
Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
+ N PNEST+V+VLSACA +L+LGN + S IE GL SNL + NALIDMYSKCGDL
Sbjct: 254 KANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQ 313
Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
AR+LF+ + +RDVISWNVMIGGYTH YKEAL LFR+ML S +EP ++TFLS+LP+CA
Sbjct: 314 TARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCA 373
Query: 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWN 405
+LGA+DLGKWIHAYI+KN ++ TSLID+YAKCGNI AA QVFDGM K+LASWN
Sbjct: 374 HLGAIDLGKWIHAYINKNFNSVSTSLS-TSLIDLYAKCGNIVAARQVFDGMKIKSLASWN 432
Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
AMI GLAMHG+ADKA LFS+M +G++P++ITFVG+LSAC HAGL+D+G+Q+F++M+QD
Sbjct: 433 AMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQD 492
Query: 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGES 525
YKISPK QHYGCM+DLLGRAGLF+EAE+LL+ ME+KPD AIW SLLGACR HGR+ELGE
Sbjct: 493 YKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGEL 552
Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVH 585
VA+ L ELEP+NPGAYVLLSN+YAGAG+WDDVA IRTRLND+GMKKVPGC++IEV +VVH
Sbjct: 553 VAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVH 612
Query: 586 EFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAI 645
EFLVGDKVHPQS+ IY ML+E+D L+ GFV DTSEVLYDMDEEWKEGALSHHSEKLAI
Sbjct: 613 EFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAI 672
Query: 646 AYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
A+GLISTKPGT IRI+KNLRVC NCHSATKLISKIFNREIIARDRNRFHHFKDG+CSCND
Sbjct: 673 AFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCND 732
Query: 706 YW 707
YW
Sbjct: 733 YW 734
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1009 bits (2610), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/732 (65%), Positives = 577/732 (78%), Gaps = 34/732 (4%)
Query: 10 LSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLI 69
LSP +HF PSSDPPYKLL+N P L LL+KC ++ ++KQ+HS IIK+GLHNT FA SKLI
Sbjct: 5 LSPPFVHFLPSSDPPYKLLENHPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLI 64
Query: 70 EICAVSPFGDLSYALLVFETI--REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV 127
E CA+SP DLSYAL +F +I + PN IWN +IR HSL+ +P ++ + +M+ SG
Sbjct: 65 EFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLY 124
Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
PN++TFP + KSCAK A E KQ+HAH LKL L P VHTSLI+MY+Q GEL ARLV
Sbjct: 125 PNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLV 184
Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP------------------------ 223
F+KS+LRDAVS+TALITGY S G++DDAR+LFDE+P
Sbjct: 185 FDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEAL 244
Query: 224 -----IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
++E + PN+ST+V+VLSAC H+ SLELG W+ S + G G NL + NAL+DMY
Sbjct: 245 ACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMY 304
Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
SKCG++ AR LF+ +E +DVI WN MIGGY H S Y+EAL+LF ML+ N+ PNDVTFL
Sbjct: 305 SKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFL 364
Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQ---KLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
+VLPACA LGALDLGKW+HAYIDKN + +NNVSLWTS+I MYAKCG ++ AEQVF
Sbjct: 365 AVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRS 424
Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
MG ++LASWNAMISGLAM+G A++AL LF MI EG QPDDITFVGVLSAC AG +++G
Sbjct: 425 MGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELG 484
Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
+YF++M +DY ISPKLQHYGCM+DLL R+G FDEA+ L+ MEM+PD AIW SLL ACR
Sbjct: 485 HRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACR 544
Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
+HG++E GE VA+ L ELEPEN GAYVLLSN+YAGAGRWDDVA IRT+LNDKGMKKVPGC
Sbjct: 545 IHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGC 604
Query: 576 SSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGA 635
+SIE+ VVHEFLVGDK HPQS++I+ MLDE+D LLE++GFVPDTSEVLYDMDEEWKEGA
Sbjct: 605 TSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDMDEEWKEGA 664
Query: 636 LSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHH 695
L+ HSEKLAIA+GLISTKPG+TIRIVKNLRVC NCHSATKLISKIFNREIIARDRNRFHH
Sbjct: 665 LTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIARDRNRFHH 724
Query: 696 FKDGNCSCNDYW 707
FKDG CSCND W
Sbjct: 725 FKDGFCSCNDRW 736
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1008 bits (2606), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/689 (71%), Positives = 553/689 (80%), Gaps = 55/689 (7%)
Query: 7 SLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALS 66
SL + P LHF P+SDPPYKLLQN PSL LLS C + QN+KQ+HSQIIKTGLHNTQFALS
Sbjct: 9 SLVMPPPTLHFQPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALS 68
Query: 67 KLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGF 126
KLIE CA+SPFG+LSYALL+FE+I +PNQ IWN +IRG+SLSSSPV AI FYVRM+L G
Sbjct: 69 KLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGV 128
Query: 127 VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
PN+YTFPF+LKSCAK+ A EGKQIH HVLKLGLESDPFVHTSLINMYAQNGEL A L
Sbjct: 129 EPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAEL 188
Query: 187 VFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE------------------- 227
VF+KSSLRDAVS+TALITGY RG LDDAR+LF+E+P+R+
Sbjct: 189 VFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEA 248
Query: 228 ----------NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277
N PNEST+VTVLSACA GSLELGNWV S IE HGLGSNL + NALIDM
Sbjct: 249 LAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDM 308
Query: 278 YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTF 337
YSKCGDL KARDLFE I ++D+ISWNVMIGGY+H + YKEAL LFR+M QSN+EPNDVTF
Sbjct: 309 YSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTF 368
Query: 338 LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG 397
+S+LPACAYLGALDLGKWIHAYIDK L N SLWTSLIDMYAKCGNI+AA+QVF GM
Sbjct: 369 VSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMK 428
Query: 398 YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
K+L SWNAMISGLAMHG A+ AL LF +M EG +PDDITFVGVLSAC+HAGL+++GRQ
Sbjct: 429 PKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQ 488
Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
F++M++DY ISPKLQHYGCM+DLLGRAGLFDEAEAL+K MEMKPD AIW SLLGACRVH
Sbjct: 489 CFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVH 548
Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
G +ELGE AKHL ELEPENPGAYVLLSN+YA AGRWDDVA IRT+LNDKGMKK
Sbjct: 549 GNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK------ 602
Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEID-ALLEKSGFVPDTSEVLYDMDEEWKEGAL 636
+ IY+MLDEID + E+ G VPDTSEVLYDMDEEWKEG+L
Sbjct: 603 -------------------XQDIYKMLDEIDQSFGERPGXVPDTSEVLYDMDEEWKEGSL 643
Query: 637 SHHSEKLAIAYGLISTKPGTTIRIVKNLR 665
SHHSEKLAIA+GLISTKP TTIRIVKNLR
Sbjct: 644 SHHSEKLAIAFGLISTKPETTIRIVKNLR 672
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula] gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/730 (66%), Positives = 577/730 (79%), Gaps = 33/730 (4%)
Query: 11 SPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIE 70
SPSILHF P+SDPPYK+L+ P L LL KC N+ KQ+HS IIKTGL+NT F SKLI
Sbjct: 9 SPSILHFLPASDPPYKILEQHPYLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIH 68
Query: 71 ICAVSPFGDLSYALLVFETIREP---NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV 127
CAVSP GDLSYAL +FE ++ N IWN++IRG+SLSSSP+ ++ + RM+ G
Sbjct: 69 FCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQ 128
Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
PN++TFPF+ KSC K A EGKQ+HAH LKL L +P VHTS+I+MYA GE++ ARLV
Sbjct: 129 PNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLV 188
Query: 188 FNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR---------------------- 225
F+KSSLRDAVS+TALITGY S+G LDDAR+LFDE+P++
Sbjct: 189 FDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAI 248
Query: 226 -------EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278
E N +PN+ST+V VLSAC H S ELG W+ S + +G GSNL +TNALIDMY
Sbjct: 249 VCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMY 308
Query: 279 SKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
KCG+ AR+LF+ IE++DVISWN MIGGY++ S Y+EAL LF ML+SN++PNDVTFL
Sbjct: 309 CKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFL 368
Query: 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY 398
+L ACA LGALDLGKW+HAYIDKN + +N SLWTSLIDMYAKCG I+AAE+VF M
Sbjct: 369 GILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHS 428
Query: 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEGL-QPDDITFVGVLSACNHAGLLDIGRQ 457
+ LASWNAM+SG AMHG A++AL+LFS M+ +GL +PDDITFVGVLSAC AGL+D+G Q
Sbjct: 429 RNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQ 488
Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517
YF +MIQDY ISPKLQHYGCM+DLL RA F+EAE L+K MEM+PD AIW SLL AC+ H
Sbjct: 489 YFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAH 548
Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577
GR+E GE VA+ L +LEPEN GA+VLLSN+YAGAGRWDDVA IRTRLNDKGMKKVPGC+S
Sbjct: 549 GRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTS 608
Query: 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALS 637
IE+ VHEFLVGDK HP+ +IY+ML+E+D LLE++GFVP+TSEVLYDMDEEWKEGALS
Sbjct: 609 IEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEEWKEGALS 668
Query: 638 HHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 697
HSEKLAI++GLI TKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK
Sbjct: 669 QHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFK 728
Query: 698 DGNCSCNDYW 707
DG CSCND W
Sbjct: 729 DGFCSCNDCW 738
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 967 bits (2500), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/735 (62%), Positives = 571/735 (77%), Gaps = 32/735 (4%)
Query: 5 PSSLTLSPSILHF-PPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQF 63
P ++ S HF P SSDPPY L+N PSL+LL C +Q+++ +H+Q+IKTGLHNT +
Sbjct: 7 PLTVPSSSYPFHFLPSSSDPPYDSLRNHPSLSLLHNCKTLQSLRLIHAQMIKTGLHNTNY 66
Query: 64 ALSKLIEICAVSP-FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122
ALSKL+E+C +SP F L YA+ VFETI+EPN +IWN + RGH+LSS PV A+K YV MI
Sbjct: 67 ALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMI 126
Query: 123 LSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182
G +PN+YTFPF+LKSCAK A EG+QIH HVLKLG + D FVHTSLI++Y QNG LE
Sbjct: 127 SLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLE 186
Query: 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE---------------- 226
AR VF++S RD VSYTALI GYASRGY++ A++LFDE+P+++
Sbjct: 187 DARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGN 246
Query: 227 -------------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
N P+EST+VTV+SACA GS+ELG V S I+ HG GSNL + N+
Sbjct: 247 YKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNS 306
Query: 274 LIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333
L+D+YSKCG+L A LFE + +DVISWN +IGGYTH + YKEAL+LF++ML+S PN
Sbjct: 307 LMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPN 366
Query: 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS-LWTSLIDMYAKCGNIKAAEQV 392
DVT LS+LPACA+LGA+D+G+WIH YIDK + N S L TSLIDMYAKCG+I+AA QV
Sbjct: 367 DVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQV 426
Query: 393 FDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLL 452
F+ + +K+L+SWNAMI G AMHG+AD A +FSRM G++PDDITFVG+LSAC+ +G+L
Sbjct: 427 FNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGML 486
Query: 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLG 512
D+GR F M QDYKI+PKL+HYGCM+DLLG +GLF EAE ++ MEM+PD IW SLL
Sbjct: 487 DLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLK 546
Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572
AC++ G +ELGES A++L+++EPENPG YVLLSN+YA AGRW++VA IR LNDKGMKKV
Sbjct: 547 ACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKV 606
Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK 632
PGCSSIE+ SVVHEF++GDK HP+++ IY ML+E++ LLEK+GFVPDTSEVL +M+EEWK
Sbjct: 607 PGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWK 666
Query: 633 EGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNR 692
EGAL HHSEKLAIA+GLISTKPGT + IVKNLRVC NCH ATKLISKI+ REIIARDR R
Sbjct: 667 EGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTR 726
Query: 693 FHHFKDGNCSCNDYW 707
FHHF+DG CSCNDYW
Sbjct: 727 FHHFRDGVCSCNDYW 741
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana] gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/741 (62%), Positives = 574/741 (77%), Gaps = 34/741 (4%)
Query: 1 MALPPSSLTLSPSI--LHF-PPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTG 57
M L S LT+ S HF P SSDPPY ++N PSL+LL C +Q+++ +H+Q+IK G
Sbjct: 1 MMLSCSPLTVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIG 60
Query: 58 LHNTQFALSKLIEICAVSP-FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIK 116
LHNT +ALSKLIE C +SP F L YA+ VF+TI+EPN +IWN + RGH+LSS PV A+K
Sbjct: 61 LHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALK 120
Query: 117 FYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYA 176
YV MI G +PN+YTFPF+LKSCAK A EG+QIH HVLKLG + D +VHTSLI+MY
Sbjct: 121 LYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYV 180
Query: 177 QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE---------- 226
QNG LE A VF+KS RD VSYTALI GYASRGY+++A++LFDE+P+++
Sbjct: 181 QNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISG 240
Query: 227 -------------------ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN 267
N P+EST+VTV+SACA GS+ELG V I+ HG GSN
Sbjct: 241 YAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSN 300
Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
L + NALID+YSKCG+L A LFE + +DVISWN +IGGYTH + YKEAL+LF++ML+
Sbjct: 301 LKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 360
Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS-LWTSLIDMYAKCGNI 386
S PNDVT LS+LPACA+LGA+D+G+WIH YIDK + + N S L TSLIDMYAKCG+I
Sbjct: 361 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDI 420
Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
+AA QVF+ + +K+L+SWNAMI G AMHG+AD + LFSRM G+QPDDITFVG+LSAC
Sbjct: 421 EAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSAC 480
Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
+H+G+LD+GR F M QDYK++PKL+HYGCM+DLLG +GLF EAE ++ MEM+PD I
Sbjct: 481 SHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVI 540
Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
W SLL AC++HG +ELGES A++L+++EPENPG+YVLLSN+YA AGRW++VA R LND
Sbjct: 541 WCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLND 600
Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYD 626
KGMKKVPGCSSIE+ SVVHEF++GDK HP+++ IY ML+E++ LLEK+GFVPDTSEVL +
Sbjct: 601 KGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQE 660
Query: 627 MDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 686
M+EEWKEGAL HHSEKLAIA+GLISTKPGT + IVKNLRVC NCH ATKLISKI+ REII
Sbjct: 661 MEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREII 720
Query: 687 ARDRNRFHHFKDGNCSCNDYW 707
ARDR RFHHF+DG CSCNDYW
Sbjct: 721 ARDRTRFHHFRDGVCSCNDYW 741
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna] | Back alignment and taxonomy information |
|---|
Score = 918 bits (2373), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/710 (62%), Positives = 557/710 (78%), Gaps = 31/710 (4%)
Query: 29 QNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSP-FGDLSYALLVF 87
+N PSL+LL C +Q+++ +H+Q+IKTGLHNT +ALS+L+E C +SP F L YA+ VF
Sbjct: 1 RNHPSLSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVF 60
Query: 88 ETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAIS 147
ETI+EPN +IWN + RGH+LSS PV AIK YV MI G +PN+YTFPF+LKSCAK+
Sbjct: 61 ETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSK 120
Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
EG+QIH HVLKLG E D +VHTSLI+MY +NG + A VF+ SS RD VSYTALITGYA
Sbjct: 121 EGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYA 180
Query: 208 SRGYLDDARQLFDEMPIRE-----------------------------ENFVPNESTVVT 238
SRGY++ A+++FDE+P+++ N P+EST+VT
Sbjct: 181 SRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVT 240
Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
V+SACA GS++LG V S I+ HGLGSNL + NALID+YSKCG++ A LF+ + +D
Sbjct: 241 VVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKD 300
Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
VISWN MIGGYTH + YKEAL+LF++ML+S PNDVT LS+LPACA LGA+D G+WIH
Sbjct: 301 VISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHV 360
Query: 359 YIDKNHQKLNNVS-LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
YIDK + + N S L TSLIDMYAKCG+I+AA QVF+ M ++TL++ NAMI G AMHG+A
Sbjct: 361 YIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRA 420
Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
+ A +FSRM G++PDDITFVG+LSAC+H+G+LD+GR+ F +M Q+YKI+PKL+HYGC
Sbjct: 421 NAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGC 480
Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
M+DLLG GLF EAE ++ TM M+PD IW SLL AC++HG +ELGES A+ L+++EPEN
Sbjct: 481 MIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPEN 540
Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
PG+YVLLSN+YA AGRW++VA IR LNDKGMKKVPGCSSIE+ SVVHEF++GDK HP++
Sbjct: 541 PGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRN 600
Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT 657
+ IY ML+E++ LLE++GFVPDTSEVL +M+EE+K+GAL HHSEKLAIA+GLISTKPGT
Sbjct: 601 REIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEFKQGALRHHSEKLAIAFGLISTKPGTK 660
Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
+ IVKNLRVC NCH ATKLISKI+ REIIARDR RFHHF+DG CSCNDYW
Sbjct: 661 LTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710
|
Source: Barbarea verna Species: Barbarea verna Genus: Barbarea Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya wallichii] | Back alignment and taxonomy information |
|---|
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/710 (61%), Positives = 556/710 (78%), Gaps = 31/710 (4%)
Query: 29 QNQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSP-FGDLSYALLVF 87
+N PSL+LL C +Q+++ +H+Q+IKTGLHNT +ALSKLIE C +SP F L YA+ VF
Sbjct: 1 RNHPSLSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVF 60
Query: 88 ETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAIS 147
ETI+EPN +IWN + RGH+LSS PV A+ YV MI G +PN YTFPF+LKSCAK A
Sbjct: 61 ETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFR 120
Query: 148 EGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207
EG+QIH HVLKLG + D +VHTSLI+MY QNG LE AR VF++SS RD VSYTALITGYA
Sbjct: 121 EGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYA 180
Query: 208 SRGYLDDARQLFDEMPIRE-----------------------------ENFVPNESTVVT 238
S+GY+ A+++FDE+PI++ N P+EST+V+
Sbjct: 181 SKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVS 240
Query: 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD 298
V+SACA S+ELG V S I+ HG GSNL + NALID+Y KCG++ A LFE + +D
Sbjct: 241 VVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKD 300
Query: 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358
VISWN +IGGYTH + YKEAL+LF++ML+S PNDVT LS+LPACA+LGA+++G+WIH
Sbjct: 301 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHV 360
Query: 359 YIDKNHQKLNNVSL-WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKA 417
YI+K + + N S TSLIDMYAKCG+I+AA+QVFD + ++L+SWNAMI G AMHG+A
Sbjct: 361 YINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRA 420
Query: 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477
+ A +FSRM ++PDDITFVG+LSAC+H+G+LD+GR F +M +DYKI+PKL+HYGC
Sbjct: 421 NAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGC 480
Query: 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
M+DLLG +GLF EAE ++ TMEM+PD IW SLL AC+++ +ELGES A++L+++EP+N
Sbjct: 481 MIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKN 540
Query: 538 PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS 597
PG+YVLLSN+YA AGRW++VA IR LNDKGMKKVPGCSSIE+ SVVHEF++GDK HP++
Sbjct: 541 PGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRN 600
Query: 598 KHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTT 657
+ IY ML+E++ LLE++GFVPDTSEVL +M+EEWKEGAL HHSEKLAIA+GLISTKPGT
Sbjct: 601 REIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTK 660
Query: 658 IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
+ IVKNLRVC NCH ATKLISKI+ REIIARDR RFHHF+DG CSCNDYW
Sbjct: 661 LTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710
|
Source: Crucihimalaya wallichii Species: Crucihimalaya wallichii Genus: Crucihimalaya Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 707 | ||||||
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.792 | 0.755 | 0.625 | 1.1e-195 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.615 | 0.673 | 0.490 | 1.1e-150 | |
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 0.616 | 0.689 | 0.498 | 3.3e-147 | |
| TAIR|locus:2077878 | 685 | AT3G08820 "AT3G08820" [Arabido | 0.943 | 0.973 | 0.419 | 3.6e-144 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.745 | 0.674 | 0.457 | 1.1e-142 | |
| TAIR|locus:2019160 | 643 | AT1G74630 [Arabidopsis thalian | 0.702 | 0.772 | 0.413 | 1.3e-137 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.926 | 0.752 | 0.407 | 1.6e-134 | |
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.859 | 0.922 | 0.435 | 2.3e-133 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.944 | 0.785 | 0.386 | 3.8e-133 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.939 | 0.670 | 0.393 | 1.2e-131 |
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1895 (672.1 bits), Expect = 1.1e-195, P = 1.1e-195
Identities = 353/564 (62%), Positives = 446/564 (79%)
Query: 146 ISEGKQIHAH-VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALIT 204
+ G+ AH V D +T+LI YA G +E+A+ +F++ ++D VS+ A+I+
Sbjct: 180 VQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMIS 239
Query: 205 GYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264
GYA G +A +LF +M + N P+EST+VTV+SACA GS+ELG V I+ HG
Sbjct: 240 GYAETGNYKEALELFKDM--MKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGF 297
Query: 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324
GSNL + NALID+YSKCG+L A LFE + +DVISWN +IGGYTH + YKEAL+LF++
Sbjct: 298 GSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQE 357
Query: 325 MLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS-LWTSLIDMYAKC 383
ML+S PNDVT LS+LPACA+LGA+D+G+WIH YIDK + + N S L TSLIDMYAKC
Sbjct: 358 MLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKC 417
Query: 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443
G+I+AA QVF+ + +K+L+SWNAMI G AMHG+AD + LFSRM G+QPDDITFVG+L
Sbjct: 418 GDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLL 477
Query: 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD 503
SAC+H+G+LD+GR F M QDYK++PKL+HYGCM+DLLG +GLF EAE ++ MEM+PD
Sbjct: 478 SACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPD 537
Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563
IW SLL AC++HG +ELGES A++L+++EPENPG+YVLLSN+YA AGRW++VA R
Sbjct: 538 GVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRAL 597
Query: 564 LNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEV 623
LNDKGMKKVPGCSSIE+ SVVHEF++GDK HP+++ IY ML+E++ LLEK+GFVPDTSEV
Sbjct: 598 LNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEV 657
Query: 624 LYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNR 683
L +M+EEWKEGAL HHSEKLAIA+GLISTKPGT + IVKNLRVC NCH ATKLISKI+ R
Sbjct: 658 LQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKR 717
Query: 684 EIIARDRNRFHHFKDGNCSCNDYW 707
EIIARDR RFHHF+DG CSCNDYW
Sbjct: 718 EIIARDRTRFHHFRDGVCSCNDYW 741
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1195 (425.7 bits), Expect = 1.1e-150, Sum P(2) = 1.1e-150
Identities = 214/436 (49%), Positives = 315/436 (72%)
Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
N +ID Y + GD AR LF+ + +R V+SWN MI GY+ +K+A+ +FR+M + +I
Sbjct: 212 NVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIR 271
Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391
PN VT +SVLPA + LG+L+LG+W+H Y + + ++++V L ++LIDMY+KCG I+ A
Sbjct: 272 PNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDV-LGSALIDMYSKCGIIEKAIH 330
Query: 392 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451
VF+ + + + +W+AMI+G A+HG+A A+ F +M G++P D+ ++ +L+AC+H GL
Sbjct: 331 VFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGL 390
Query: 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 511
++ GR+YF+ M+ + P+++HYGCMVDLLGR+GL DEAE + M +KPD IW +LL
Sbjct: 391 VEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALL 450
Query: 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571
GACR+ G +E+G+ VA L+++ P + GAYV LSNMYA G W +V+ +R R+ +K ++K
Sbjct: 451 GACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRK 510
Query: 572 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 631
PGCS I++ V+HEF+V D HP++K I ML EI L +G+ P T++VL +++EE
Sbjct: 511 DPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEED 570
Query: 632 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 691
KE L +HSEK+A A+GLIST PG IRIVKNLR+C +CHS+ KLISK++ R+I RDR
Sbjct: 571 KENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRK 630
Query: 692 RFHHFKDGNCSCNDYW 707
RFHHF+DG+CSC DYW
Sbjct: 631 RFHHFQDGSCSCMDYW 646
|
|
| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1180 (420.4 bits), Expect = 3.3e-147, Sum P(2) = 3.3e-147
Identities = 219/439 (49%), Positives = 313/439 (71%)
Query: 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML-QSN 329
+ A+I Y+K G++ AR LF+S+ +RD++SWNVMI GY +ALMLF+++L +
Sbjct: 195 STAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGK 254
Query: 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389
+P+++T ++ L AC+ +GAL+ G+WIH ++ + +LN V + T LIDMY+KCG+++ A
Sbjct: 255 PKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLN-VKVCTGLIDMYSKCGSLEEA 313
Query: 390 EQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG-EGLQPDDITFVGVLSACNH 448
VF+ K + +WNAMI+G AMHG + AL LF+ M G GLQP DITF+G L AC H
Sbjct: 314 VLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAH 373
Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
AGL++ G + F +M Q+Y I PK++HYGC+V LLGRAG A +K M M D+ +W+
Sbjct: 374 AGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWS 433
Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
S+LG+C++HG LG+ +A++L+ L +N G YVLLSN+YA G ++ VA +R + +KG
Sbjct: 434 SVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKG 493
Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
+ K PG S+IE+ + VHEF GD+ H +SK IY ML +I ++ G+VP+T+ VL D++
Sbjct: 494 IVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLE 553
Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
E KE +L HSE+LAIAYGLISTKPG+ ++I KNLRVC +CH+ TKLISKI R+I+ R
Sbjct: 554 ETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMR 613
Query: 689 DRNRFHHFKDGNCSCNDYW 707
DRNRFHHF DG+CSC D+W
Sbjct: 614 DRNRFHHFTDGSCSCGDFW 632
|
|
| TAIR|locus:2077878 AT3G08820 "AT3G08820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1409 (501.1 bits), Expect = 3.6e-144, P = 3.6e-144
Identities = 282/672 (41%), Positives = 413/672 (61%)
Query: 36 LLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ 95
L+S + ++KQ+H +I LH+ F ++ L++ F Y+ L+F + PN
Sbjct: 19 LISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLF--FRQTKYSYLLFSHTQFPNI 76
Query: 96 VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAH 155
++N++I G + + ++ + G + +TFP +LK+C + S+ G +H+
Sbjct: 77 FLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSL 136
Query: 156 VLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDA 215
V+K G D TSL+++Y+ +G L A +F++ R V++TAL +GY + G +A
Sbjct: 137 VVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREA 196
Query: 216 RQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275
LF +M E P+ +V VLSAC H+G L+ G W+ +E + N V L+
Sbjct: 197 IDLFKKMV--EMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLV 254
Query: 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV 335
++Y+KCG + KAR +F+S+ ++D+++W+ MI GY S KE + LF QMLQ N++P+
Sbjct: 255 NLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQF 314
Query: 336 TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395
+ + L +CA LGALDLG+W + ID+ H+ L N+ + +LIDMYAKCG + +VF
Sbjct: 315 SIVGFLSSCASLGALDLGEWGISLIDR-HEFLTNLFMANALIDMYAKCGAMARGFEVFKE 373
Query: 396 MGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIG 455
M K + NA ISGLA +G + ++F + G+ PD TF+G+L C HAGL+ G
Sbjct: 374 MKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDG 433
Query: 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACR 515
++FNA+ Y + ++HYGCMVDL GRAG+ D+A L+ M M+P+A +W +LL CR
Sbjct: 434 LRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCR 493
Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575
+ +L E+V K L+ LEP N G YV LSN+Y+ GRWD+ A +R +N KGMKK+PG
Sbjct: 494 LVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGY 553
Query: 576 SSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGA 635
S IE+ VHEFL DK HP S IY L+++ + GFVP T V +D++EE KE
Sbjct: 554 SWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERV 613
Query: 636 LSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHH 695
L +HSEKLA+A GLIST G IR+VKNLRVCG+CH KLISKI REI+ RD NRFH
Sbjct: 614 LGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHC 673
Query: 696 FKDGNCSCNDYW 707
F +G+CSCNDYW
Sbjct: 674 FTNGSCSCNDYW 685
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1268 (451.4 bits), Expect = 1.1e-142, Sum P(2) = 1.1e-142
Identities = 246/538 (45%), Positives = 350/538 (65%)
Query: 170 SLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENF 229
++I YAQ+G+++ AR +F++S ++D ++TA+++GY +++AR+LFD+MP R
Sbjct: 255 TIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER---- 310
Query: 230 VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARD 289
NE + +L+ +E+ + ++ N+ N +I Y++CG + +A++
Sbjct: 311 --NEVSWNAMLAGYVQGERMEMAKELFDVMPCR----NVSTWNTMITGYAQCGKISEAKN 364
Query: 290 LFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349
LF+ + KRD +SW MI GY+ + EAL LF QM + N +F S L CA + A
Sbjct: 365 LFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVA 424
Query: 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMIS 409
L+LGK +H + K + + +L+ MY KCG+I+ A +F M K + SWN MI+
Sbjct: 425 LELGKQLHGRLVKGGYE-TGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIA 483
Query: 410 GLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469
G + HG + AL F M EGL+PDD T V VLSAC+H GL+D GRQYF M QDY +
Sbjct: 484 GYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVM 543
Query: 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKH 529
P QHY CMVDLLGRAGL ++A L+K M +PDAAIW +LLGA RVHG EL E+ A
Sbjct: 544 PNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADK 603
Query: 530 LLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLV 589
+ +EPEN G YVLLSN+YA +GRW DV +R R+ DKG+KKVPG S IE+ + H F V
Sbjct: 604 IFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSV 663
Query: 590 GDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGL 649
GD+ HP+ I+ L+E+D ++K+G+V TS VL+D++EE KE + +HSE+LA+AYG+
Sbjct: 664 GDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGI 723
Query: 650 ISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
+ G IR++KNLRVC +CH+A K +++I R II RD NRFHHFKDG+CSC DYW
Sbjct: 724 MRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
|
| TAIR|locus:2019160 AT1G74630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1061 (378.5 bits), Expect = 1.3e-137, Sum P(2) = 1.3e-137
Identities = 211/510 (41%), Positives = 312/510 (61%)
Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
T LI Y G ++ AR++FDEM + N V + + G+ E+ + + L+
Sbjct: 145 TTLIGMYGGCGCVEFARKVFDEM--HQPNLVAWNAVITACFRGNDVAGAREIFDKM--LV 200
Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
H N ++ Y K G+L A+ +F + RD +SW+ MI G H + E+
Sbjct: 201 RNHTSW------NVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESF 254
Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
+ FR++ ++ + PN+V+ VL AC+ G+ + GK +H +++K VS+ +LIDM
Sbjct: 255 LYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWI-VSVNNALIDM 313
Query: 380 YAKCGNIKAAEQVFDGMGYKT-LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
Y++CGN+ A VF+GM K + SW +MI+GLAMHG+ ++A+ LF+ M G+ PD I+
Sbjct: 314 YSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGIS 373
Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498
F+ +L AC+HAGL++ G YF+ M + Y I P+++HYGCMVDL GR+G +A + M
Sbjct: 374 FISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQM 433
Query: 499 EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558
+ P A +W +LLGAC HG +EL E V + L EL+P N G VLLSN YA AG+W DVA
Sbjct: 434 PIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVA 493
Query: 559 TIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALL-EKSGFV 617
+IR + + +KK S +EVG +++F G+K +E L EI L +++G+
Sbjct: 494 SIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYT 553
Query: 618 PDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLI 677
P+ + LYD++EE KE +S HSEKLA+A+ L G IRIVKNLR+C +CH+ KL
Sbjct: 554 PEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLT 613
Query: 678 SKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
SK++ EI+ RDRNRFH FKDG+CSC DYW
Sbjct: 614 SKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1318 (469.0 bits), Expect = 1.6e-134, P = 1.6e-134
Identities = 270/663 (40%), Positives = 405/663 (61%)
Query: 47 KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
+Q+H I+K+G + L+ + D A VF+ + E + + WN+II G+
Sbjct: 215 EQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDS--ARKVFDEMTERDVISWNSIINGYV 272
Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE-SDP 165
+ + +V+M++SG + T + CA IS G+ +H+ +K D
Sbjct: 273 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDR 332
Query: 166 FVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIR 225
F +T L++MY++ G+L+SA+ VF + S R VSYT++I GYA G +A +LF+EM
Sbjct: 333 FCNT-LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEM--E 389
Query: 226 EENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLV 285
EE P+ TV VL+ CA L+ G V I+ + LG ++ V+NAL+DMY+KCG +
Sbjct: 390 EEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQ 449
Query: 286 KARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN-IEPNDVTFLSVLPAC 344
+A +F + +D+ISWN +IGGY+ EAL LF +L+ P++ T VLPAC
Sbjct: 450 EAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC 509
Query: 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASW 404
A L A D G+ IH YI +N ++ + SL+DMYAKCG + A +FD + K L SW
Sbjct: 510 ASLSAFDKGREIHGYIMRNGY-FSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSW 568
Query: 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464
MI+G MHG +A++LF++M G++ D+I+FV +L AC+H+GL+D G ++FN M
Sbjct: 569 TVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRH 628
Query: 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGE 524
+ KI P ++HY C+VD+L R G +A ++ M + PDA IW +LL CR+H ++L E
Sbjct: 629 ECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAE 688
Query: 525 SVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVV 584
VA+ + ELEPEN G YVL++N+YA A +W+ V +R R+ +G++K PGCS IE+ V
Sbjct: 689 KVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRV 748
Query: 585 HEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLA 644
+ F+ GD +P++++I L ++ A + + G+ P T L D +E KE AL HSEKLA
Sbjct: 749 NIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLA 808
Query: 645 IAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCN 704
+A G+IS+ G IR+ KNLRVCG+CH K +SK+ REI+ RD NRFH FKDG+CSC
Sbjct: 809 MALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCR 868
Query: 705 DYW 707
+W
Sbjct: 869 GFW 871
|
|
| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1307 (465.1 bits), Expect = 2.3e-133, P = 2.3e-133
Identities = 269/618 (43%), Positives = 392/618 (63%)
Query: 98 WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL 157
WN++I + S A+ + M P +FP +K+C+ + I GKQ H
Sbjct: 44 WNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAF 103
Query: 158 KLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ 217
G +SD FV ++LI MY+ G+LE AR VF++ R+ VS+T++I GY G DA
Sbjct: 104 VFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVS 163
Query: 218 LFDEMPIREEN----FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA 273
LF ++ + E + + +V+V+SAC+ + + L + S + G + V N
Sbjct: 164 LFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNT 223
Query: 274 LIDMYSKCGD--LVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
L+D Y+K G+ + AR +F+ I +D +S+N ++ Y + EA +FR+++++ +
Sbjct: 224 LLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVV 283
Query: 332 P-NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390
N +T +VL A ++ GAL +GK IH + + + ++V + TS+IDMY KCG ++ A
Sbjct: 284 TFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLE-DDVIVGTSIIDMYCKCGRVETAR 342
Query: 391 QVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450
+ FD M K + SW AMI+G MHG A KAL LF MI G++P+ ITFV VL+AC+HAG
Sbjct: 343 KAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAG 402
Query: 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510
L G ++FNAM + + P L+HYGCMVDLLGRAG +A L++ M+MKPD+ IW+SL
Sbjct: 403 LHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSL 462
Query: 511 LGACRVHGRLELGE-SVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569
L ACR+H +EL E SVA+ L EL+ N G Y+LLS++YA AGRW DV +R + ++G+
Sbjct: 463 LAACRIHKNVELAEISVAR-LFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGL 521
Query: 570 KKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDE 629
K PG S +E+ VH FL+GD+ HPQ + IYE L E++ L ++G+V +TS V +D+DE
Sbjct: 522 VKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDE 581
Query: 630 EWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARD 689
E KE L HSEKLAIA+G+++T PG+T+ +VKNLRVC +CH+ KLISKI +RE + RD
Sbjct: 582 EEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRD 641
Query: 690 RNRFHHFKDGNCSCNDYW 707
RFHHFKDG CSC DYW
Sbjct: 642 AKRFHHFKDGGCSCGDYW 659
|
|
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1305 (464.4 bits), Expect = 3.8e-133, P = 3.8e-133
Identities = 265/685 (38%), Positives = 410/685 (59%)
Query: 35 ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALS-KLIEICAVSPFGDLSYALLVFETI 90
A++ C+N + + ++KTG + + LI++ V A VF+ +
Sbjct: 171 AVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMF-VKGENSFENAYKVFDKM 229
Query: 91 REPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGK 150
E N V W +I P AI+F++ M+LSGF + +T + +CA++ +S GK
Sbjct: 230 SELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGK 289
Query: 151 QIHAHVLKLGLESDPFVHTSLINMYAQ---NGELESARLVFNKSSLRDAVSYTALITGYA 207
Q+H+ ++ GL D V SL++MYA+ +G ++ R VF++ +S+TALITGY
Sbjct: 290 QLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYM 347
Query: 208 SRGYL-DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266
L +A LF EM I + + PN T + AC ++ +G V GL S
Sbjct: 348 KNCNLATEAINLFSEM-ITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLAS 406
Query: 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326
N V N++I M+ K + A+ FES+ +++++S+N + G ++++A L ++
Sbjct: 407 NSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEIT 466
Query: 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386
+ + + TF S+L A +G++ G+ IH+ + K N + +LI MY+KCG+I
Sbjct: 467 ERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQ-PVCNALISMYSKCGSI 525
Query: 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
A +VF+ M + + SW +MI+G A HG A + L F++MI EG++P+++T+V +LSAC
Sbjct: 526 DTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSAC 585
Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI 506
+H GL+ G ++FN+M +D+KI PK++HY CMVDLL RAGL +A + TM + D +
Sbjct: 586 SHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLV 645
Query: 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
W + LGACRVH ELG+ A+ +LEL+P P AY+ LSN+YA AG+W++ +R ++ +
Sbjct: 646 WRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKE 705
Query: 567 KGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYD 626
+ + K GCS IEVG +H+F VGD HP + IY+ LD + +++ G+VPDT VL+
Sbjct: 706 RNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHK 765
Query: 627 MDEE----WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFN 682
++EE KE L HSEK+A+A+GLIST +R+ KNLRVCG+CH+A K IS +
Sbjct: 766 LEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSG 825
Query: 683 REIIARDRNRFHHFKDGNCSCNDYW 707
REI+ RD NRFHHFKDG CSCNDYW
Sbjct: 826 REIVLRDLNRFHHFKDGKCSCNDYW 850
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1291 (459.5 bits), Expect = 1.2e-131, P = 1.2e-131
Identities = 267/679 (39%), Positives = 413/679 (60%)
Query: 34 LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEI-CAVSPFGDLSYALLVFETIRE 92
LA K ++ +QVH +K GL + LI + C + FG +A VF+ + E
Sbjct: 322 LATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFG---FARTVFDNMSE 378
Query: 93 PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKI-SAISEGKQ 151
+ + WN++I G + + V A+ +++++ G P+ YT +LK+ + + +S KQ
Sbjct: 379 RDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQ 438
Query: 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGY 211
+H H +K+ SD FV T+LI+ Y++N ++ A ++F + + D V++ A++ GY
Sbjct: 439 VHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYTQSHD 497
Query: 212 LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
+LF M + E ++ T+ TV C + ++ G V + G +L V+
Sbjct: 498 GHKTLKLFALMHKQGER--SDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS 555
Query: 272 NALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 331
+ ++DMY KCGD+ A+ F+SI D ++W MI G + + A +F QM +
Sbjct: 556 SGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVL 615
Query: 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS---LWTSLIDMYAKCGNIKA 388
P++ T ++ A + L AL+ G+ IHA N KLN + + TSL+DMYAKCG+I
Sbjct: 616 PDEFTIATLAKASSCLTALEQGRQIHA----NALKLNCTNDPFVGTSLVDMYAKCGSIDD 671
Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
A +F + + +WNAM+ GLA HG+ + L LF +M G++PD +TF+GVLSAC+H
Sbjct: 672 AYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSH 731
Query: 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWT 508
+GL+ ++ +M DY I P+++HY C+ D LGRAGL +AE L+++M M+ A+++
Sbjct: 732 SGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYR 791
Query: 509 SLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568
+LL ACRV G E G+ VA LLELEP + AYVLLSNMYA A +WD++ RT +
Sbjct: 792 TLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHK 851
Query: 569 MKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMD 628
+KK PG S IEV + +H F+V D+ + Q++ IY + ++ +++ G+VP+T L D++
Sbjct: 852 VKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVE 911
Query: 629 EEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 688
EE KE AL +HSEKLA+A+GL+ST P T IR++KNLRVCG+CH+A K I+K++NREI+ R
Sbjct: 912 EEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLR 971
Query: 689 DRNRFHHFKDGNCSCNDYW 707
D NRFH FKDG CSC DYW
Sbjct: 972 DANRFHRFKDGICSCGDYW 990
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LN01 | PPR21_ARATH | No assigned EC number | 0.6248 | 1.0 | 0.9541 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 707 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.0 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-164 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-76 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-64 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-52 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-45 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-43 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 3e-26 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 549 bits (1417), Expect = 0.0
Identities = 262/659 (39%), Positives = 392/659 (59%), Gaps = 8/659 (1%)
Query: 47 KQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHS 106
++VH+ +++ G ++ LI + GD+ A LVF+ + + + WN +I G+
Sbjct: 207 REVHAHVVRFGFELDVDVVNALITMYVKC--GDVVSARLVFDRMPRRDCISWNAMISGYF 264
Query: 107 LSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF 166
+ + ++ + M P+ T ++ +C + G+++H +V+K G D
Sbjct: 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS 324
Query: 167 VHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226
V SLI MY G A VF++ +DAVS+TA+I+GY G D A + + M
Sbjct: 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ-- 382
Query: 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286
+N P+E T+ +VLSACA +G L++G + L E GL S + V NALI+MYSKC + K
Sbjct: 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442
Query: 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY 346
A ++F +I ++DVISW +I G + EAL+ FRQML + ++PN VT ++ L ACA
Sbjct: 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACAR 501
Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNA 406
+GAL GK IHA++ + + L +L+D+Y +CG + A F+ K + SWN
Sbjct: 502 IGALMCGKEIHAHVLRTGIGFDGF-LPNALLDLYVRCGRMNYAWNQFNSHE-KDVVSWNI 559
Query: 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466
+++G HGK A+ LF+RM+ G+ PD++TF+ +L AC+ +G++ G +YF++M + Y
Sbjct: 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619
Query: 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526
I+P L+HY C+VDLLGRAG EA + M + PD A+W +LL ACR+H +ELGE
Sbjct: 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELA 679
Query: 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHE 586
A+H+ EL+P + G Y+LL N+YA AG+WD+VA +R + + G+ PGCS +EV VH
Sbjct: 680 AQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHA 739
Query: 587 FLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIA 646
FL D+ HPQ K I +L+ ++ SG S + D E K+ HSE+LAIA
Sbjct: 740 FLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIA 798
Query: 647 YGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705
+GLI+T PG I + KNL +C NCH+ K ISKI REI RD +FHHFKDG CSC D
Sbjct: 799 FGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 488 bits (1259), Expect = e-164
Identities = 219/576 (38%), Positives = 342/576 (59%), Gaps = 3/576 (0%)
Query: 132 TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS 191
T+ ++++C + +I K ++ HV G E D ++ ++ M+ + G L AR +F++
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251
R+ S+ +I G G +A LF EM E+ T V +L A A +GS
Sbjct: 185 PERNLASWGTIIGGLVDAGNYREAFALFREM--WEDGSDAEPRTFVVMLRASAGLGSARA 242
Query: 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311
G + + G+ + V+ ALIDMYSKCGD+ AR +F+ + ++ ++WN M+ GY
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL 302
Query: 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS 371
+EAL L+ +M S + + TF ++ + L L+ K HA + + L+ V+
Sbjct: 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362
Query: 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431
T+L+D+Y+K G ++ A VFD M K L SWNA+I+G HG+ KA+ +F RMI EG
Sbjct: 363 N-TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421
Query: 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491
+ P+ +TF+ VLSAC ++GL + G + F +M ++++I P+ HY CM++LLGR GL DEA
Sbjct: 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
Query: 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551
A+++ KP +W +LL ACR+H LELG A+ L + PE YV+L N+Y +
Sbjct: 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541
Query: 552 GRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALL 611
GR + A + L KG+ P C+ IEV H F GD++HPQS+ IY+ LDE+ +
Sbjct: 542 GRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEI 601
Query: 612 EKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCH 671
+ G+V + +E+L D+DE+ ++ + +HSEKLAIA+GLI+T T ++I ++ R+C +CH
Sbjct: 602 SEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCH 661
Query: 672 SATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707
K I+ + REI+ RD +RFHHFK G CSC DYW
Sbjct: 662 KVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 263 bits (673), Expect = 1e-76
Identities = 150/466 (32%), Positives = 247/466 (53%), Gaps = 16/466 (3%)
Query: 77 FGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136
FG+L +A VF + E + WN ++ G++ + A+ Y RM+ +G P+ YTFP +
Sbjct: 134 FGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCV 193
Query: 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA 196
L++C I ++ G+++HAHV++ G E D V +LI MY + G++ SARLVF++ RD
Sbjct: 194 LRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC 253
Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256
+S+ A+I+GY G + +LF M RE + P+ T+ +V+SAC +G LG +
Sbjct: 254 ISWNAMISGYFENGECLEGLELFFTM--RELSVDPDLMTITSVISACELLGDERLGREMH 311
Query: 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK 316
+ G ++ V N+LI MY G +A +F +E +D +SW MI GY
Sbjct: 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPD 371
Query: 317 EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376
+AL + M Q N+ P+++T SVL ACA LG LD+G +H ++ ++ V + +L
Sbjct: 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANAL 430
Query: 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
I+MY+KC I A +VF + K + SW ++I+GL ++ + +AL F +M+ L+P+
Sbjct: 431 IEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNS 489
Query: 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG----CMVDLLGRAGLFDEAE 492
+T + LSAC G L G++ I + + + G ++DL R G + A
Sbjct: 490 VTLIAALSACARIGALMCGKE-----IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544
Query: 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
+ E D W LL HG+ + + ++E NP
Sbjct: 545 NQFNSHE--KDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-VNP 587
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 228 bits (582), Expect = 4e-64
Identities = 132/403 (32%), Positives = 201/403 (49%), Gaps = 27/403 (6%)
Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLK----LGLESDPFVHTSLINMYAQNGELES 183
+ + + + C A+ EG ++ + L LG+ + ++++M+ + GEL
Sbjct: 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR----LGNAMLSMFVRFGELVH 139
Query: 184 ARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM---PIREENFVPNESTVVTVL 240
A VF K RD S+ L+ GYA GY D+A L+ M +R P+ T VL
Sbjct: 140 AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR-----PDVYTFPCVL 194
Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
C + L G V + + G ++ V NALI MY KCGD+V AR +F+ + +RD I
Sbjct: 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCI 254
Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
SWN MI GY + E L LF M + +++P+ +T SV+ AC LG LG+ +H Y+
Sbjct: 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314
Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
K + +VS+ SLI MY G+ AE+VF M K SW AMISG +G DKA
Sbjct: 315 VKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKA 373
Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY----G 476
L ++ M + + PD+IT VLSAC G LD+G + + L Y
Sbjct: 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVG-----VKLHELAERKGLISYVVVAN 428
Query: 477 CMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
++++ + D+A + + K D WTS++ R++ R
Sbjct: 429 ALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRLNNR 470
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 1e-52
Identities = 127/475 (26%), Positives = 226/475 (47%), Gaps = 53/475 (11%)
Query: 35 ALLSKCTNMQNI---KQVHSQIIKTGLHNTQFALSKLIEI---CAVSPFGDLSYALLVFE 88
AL+ C +++I K V+ + +G Q+ +++++ + C G L A +F+
Sbjct: 128 ALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC-----GMLIDARRLFD 182
Query: 89 TIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISE 148
+ E N W II G + + A + M G TF +L++ A + +
Sbjct: 183 EMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242
Query: 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS 208
G+Q+H VLK G+ D FV +LI+MY++ G++E AR VF+ + V++ +++ GYA
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL 302
Query: 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV-CSLIEGHGLGSN 267
GY ++A L+ EM R+ ++ T ++ + + LE LI G +
Sbjct: 303 HGYSEEALCLYYEM--RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLD 359
Query: 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327
+ AL+D+YSK G + AR++F+ + ++++ISWN +I GY + +A+ +F +M+
Sbjct: 360 IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA 419
Query: 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387
+ PN VTFL+VL AC Y G + G I + +NH+ M+ C
Sbjct: 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR--------IKPRAMHYAC---- 467
Query: 388 AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447
MI L G D+A ++ R +P + +L+AC
Sbjct: 468 -------------------MIELLGREGLLDEAYAMIRR---APFKPTVNMWAALLTACR 505
Query: 448 HAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTMEMK 501
L++GR A + Y + P KL +Y +++L +G EA +++T++ K
Sbjct: 506 IHKNLELGRL---AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 5e-45
Identities = 97/319 (30%), Positives = 161/319 (50%), Gaps = 5/319 (1%)
Query: 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLI 259
+ + S G L+ A +L + M E +E V + C ++E G+ VCS
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQ--ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRA 112
Query: 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEAL 319
+ + NA++ M+ + G+LV A +F + +RD+ SWNV++GGY + EAL
Sbjct: 113 LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEAL 172
Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379
L+ +ML + + P+ TF VL C + L G+ +HA++ + +L +V + +LI M
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFEL-DVDVVNALITM 231
Query: 380 YAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439
Y KCG++ +A VFD M + SWNAMISG +G+ + L LF M + PD +T
Sbjct: 232 YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291
Query: 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME 499
V+SAC G +GR+ + + + + ++ + G + EAE + ME
Sbjct: 292 TSVISACELLGDERLGRE-MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350
Query: 500 MKPDAAIWTSLLGACRVHG 518
K DA WT+++ +G
Sbjct: 351 TK-DAVSWTAMISGYEKNG 368
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 2e-43
Identities = 100/339 (29%), Positives = 173/339 (51%), Gaps = 5/339 (1%)
Query: 182 ESARLVFNKSSLRDA-VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
ES + + +R + VS + I + G +A +LF+ + +P ST ++
Sbjct: 72 ESKDARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLP-ASTYDALV 130
Query: 241 SACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVI 300
AC + S+ V +E G + ++ N ++ M+ KCG L+ AR LF+ + +R++
Sbjct: 131 EACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLA 190
Query: 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI 360
SW +IGG +Y+EA LFR+M + + TF+ +L A A LG+ G+ +H +
Sbjct: 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250
Query: 361 DKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420
K + + + +LIDMY+KCG+I+ A VFDGM KT +WN+M++G A+HG +++A
Sbjct: 251 LKTGV-VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEA 309
Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
L L+ M G+ D TF ++ + LL+ +Q +I+ + +VD
Sbjct: 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVD 368
Query: 481 LLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519
L + G ++A + M K + W +L+ HGR
Sbjct: 369 LYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGNHGR 406
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-26
Identities = 51/133 (38%), Positives = 65/133 (48%), Gaps = 25/133 (18%)
Query: 573 PGCSSIEVGSVVHEFLVGDKVHPQSK--HIYEMLDEIDALLEKSGFVPDTSEVLYDMDEE 630
PGC E + L GD HP SK + E G VP+T E+ +D+D E
Sbjct: 1 PGCVWSEG----KKTLSGDGSHPTSKEELFQRIKVE--------GVVPETKEIGHDVDAE 48
Query: 631 ------WKEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNRE 684
K L+ H+EK A+AYG TT I R+CG+CH + I+K RE
Sbjct: 49 EFRDNGIKGKLLASHAEKQALAYG-----LLTTRIIKVLKRMCGDCHEFFRYIAKYTGRE 103
Query: 685 IIARDRNRFHHFK 697
II RD +RFHHFK
Sbjct: 104 IIVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 3e-14
Identities = 93/383 (24%), Positives = 183/383 (47%), Gaps = 22/383 (5%)
Query: 127 VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARL 186
P TF ++ CA I ++ V + GL++D ++T+LI+ A++G++++
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493
Query: 187 VFNKSSLR----DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSA 242
VF++ + ++ ALI G A G + A + M R +N P+ ++SA
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM--RSKNVKPDRVVFNALISA 551
Query: 243 CAHMGSLELGNWVCSLI--EGHGLGSNLHVT-NALIDMYSKCGDLVKARDLFESIEKRDV 299
C G+++ V + + E H + + H+T AL+ + G + +A+++++ I + ++
Sbjct: 552 CGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNI 610
Query: 300 IS----WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW 355
+ + + + D+ AL ++ M + ++P++V F +++ + G LD
Sbjct: 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG---MGYK-TLASWNAMISGL 411
I K KL VS ++SL+ + N K A ++++ + + T+++ NA+I+ L
Sbjct: 671 ILQDARKQGIKLGTVS-YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729
Query: 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK 471
+ KAL + S M GL P+ IT+ +L A D+G + +D I P
Sbjct: 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPN 788
Query: 472 LQHYGCMVDLLGRAGLFDEAEAL 494
L C+ L R F++A AL
Sbjct: 789 LVMCRCITGLCLR--RFEKACAL 809
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 2e-11
Identities = 66/300 (22%), Positives = 123/300 (41%), Gaps = 54/300 (18%)
Query: 230 VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARD 289
P ST ++S CA ++ V L++ GL ++ + LI +K G K
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG---KVDA 490
Query: 290 LFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349
+FE +F +M+ + +E N TF +++ CA G
Sbjct: 491 MFE----------------------------VFHEMVNAGVEANVHTFGALIDGCARAG- 521
Query: 350 LDLGKWIHAY---IDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD---GMGYKTL-- 401
+ K AY KN K + V ++ +LI + CG A ++ FD M +T
Sbjct: 522 -QVAKAFGAYGIMRSKN-VKPDRV-VFNALI---SACGQSGAVDRAFDVLAEMKAETHPI 575
Query: 402 ----ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457
+ A++ A G+ D+A ++ + ++ + +++C+ G D
Sbjct: 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635
Query: 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGAC 514
++ M + + P + +VD+ G AG D+A +L+ +K ++SL+GAC
Sbjct: 636 IYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 7e-11
Identities = 61/267 (22%), Positives = 112/267 (41%), Gaps = 44/267 (16%)
Query: 34 LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP 93
+ + S+ +++ KQ H+ +I+TG A + L+++ S +G + A VF+ +
Sbjct: 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL--YSKWGRMEDARNVFDRMPRK 389
Query: 94 NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIH 153
N + WN +I G+ A++ + RMI G PN TF +L +C +G +I
Sbjct: 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI- 448
Query: 154 AHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLD 213
+S H + R A+ Y +I G LD
Sbjct: 449 -------FQSMSENH---------------------RIKPR-AMHYACMIELLGREGLLD 479
Query: 214 DARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG---LGSNLHV 270
+A + IR F P + +L+AC +LELG + G G L + +
Sbjct: 480 EAYAM-----IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV-- 532
Query: 271 TNALIDMYSKCGDLVKARDLFESIEKR 297
L+++Y+ G +A + E+++++
Sbjct: 533 --VLLNLYNSSGRQAEAAKVVETLKRK 557
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 6e-10
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345
DV+++N +I GY +EAL LF +M + I+PN T+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 2e-09
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH 245
D V+Y LI GY +G +++A +LF+EM ++ PN T ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEM--KKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 3e-09
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
++N +I G GK ++AL LF+ M G++P+ T+ ++
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 8e-09
Identities = 75/338 (22%), Positives = 140/338 (41%), Gaps = 41/338 (12%)
Query: 275 IDMYS---KCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYK---------EALMLF 322
ID Y+ + G + DL E +EKR ++ + + H +K EA
Sbjct: 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKI----YHAKFFKACKKQRAVKEAFRFA 429
Query: 323 RQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382
+ + + TF ++ CA +D + + + K + L+T+LI AK
Sbjct: 430 KLIRNPTLS----TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCK-LYTTLISTCAK 484
Query: 383 CGNIKAAEQVFDGM---GYK-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438
G + A +VF M G + + ++ A+I G A G+ KA + M + ++PD +
Sbjct: 485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544
Query: 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYK-ISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497
F ++SAC +G +D M + I P G ++ AG D A+ + +
Sbjct: 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604
Query: 498 ME---MKPDAAIWTSLLGACRVHGRLELGESVAKHLLE--LEPENPGAYVLLSNMYAGAG 552
+ +K ++T + +C G + S+ + + ++P+ V S + AG
Sbjct: 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE----VFFSALVDVAG 660
Query: 553 RWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVG 590
D+ L D +K I++G+V + L+G
Sbjct: 661 HAGDLDKAFEILQD--ARK----QGIKLGTVSYSSLMG 692
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 1e-06
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 195 DAVSYTALITGYASRGYLDDARQLFDEMP 223
D V+Y LI G G +D+A +L DEM
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGL 432
++N++ISG GK ++AL LF M +G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436
++N +I GL G+ ++AL LF M G++PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
+++N +I G +EAL LF++M + IEP+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 93 PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142
P+ V +N +I G+ A+K + M G PN YT+ ++ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE 233
V+Y LI G G +++A +LF EM +E P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEM--KERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 4e-05
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 270 VT-NALIDMYSKCGDLVKARDLFESIEKR----DVISWNVMIGGY 309
VT N LID Y K G + +A LF ++KR +V +++++I G
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 9e-05
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 197 VSYTALITGYASRGYLDDARQLFDEM 222
V+Y +LI+GY G L++A +LF EM
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330
+++N +I GY +EAL LF++M + +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGM---GYK-TLASWNAMISGLA 412
+V + +LID Y K G ++ A ++F+ M G K + +++ +I GL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 169 TSLINMYAQNGELESARLVFN---KSSLR-DAVSYTALITGYA 207
+LI+ Y + G++E A +FN K ++ + +Y+ LI G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434
L ++NA++ LA G D AL++ M GL+P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 196 AVSYTALITGYASRGYLDDARQLFDEMPIREENFVP 231
+Y AL+ A G D A + +EM + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEM--KASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 707 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.89 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.68 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.67 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.61 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.61 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.6 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.57 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.56 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.53 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.51 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.5 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.5 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.49 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.48 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.46 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.46 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.44 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.4 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.39 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.38 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.37 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.34 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.32 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.32 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.32 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.3 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.3 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.27 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.27 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.26 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.25 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.25 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.21 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.18 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.17 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.16 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.15 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.14 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.13 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.11 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.11 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.11 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.07 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.06 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.05 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.03 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.01 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.97 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.96 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.95 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.92 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.91 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.9 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.89 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.89 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.88 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.84 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.83 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.83 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.8 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.77 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.76 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.76 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.76 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.76 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.72 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.72 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.69 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.67 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.66 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.63 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.62 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.61 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.57 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.55 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.54 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.5 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.49 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.48 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.47 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.47 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.46 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.45 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.45 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.44 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.43 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.42 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.4 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.36 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.34 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.32 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.29 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.26 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.2 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.19 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.18 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.15 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.14 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.14 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.09 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.07 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.06 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.01 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.0 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.97 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.93 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.93 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.93 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.92 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.91 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.91 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.89 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.88 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.87 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.87 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.84 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.82 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.82 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.79 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.79 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.72 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.71 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.69 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.68 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.66 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.66 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.65 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.63 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.61 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.61 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.6 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.56 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.54 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.52 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.51 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.5 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.45 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.44 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.41 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.41 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.36 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.36 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.35 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.33 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.3 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.3 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.28 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.23 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.21 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.21 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.2 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.15 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.14 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.14 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.13 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.1 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.09 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.08 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.08 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.06 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.05 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.96 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.95 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.91 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.91 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.87 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.84 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.81 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.8 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.79 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.78 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.75 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.71 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.61 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.53 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.51 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.49 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.46 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.45 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.44 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.4 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.37 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.33 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.32 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.32 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.24 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.2 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.18 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.11 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.11 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.1 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.05 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.0 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.84 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.69 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.66 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.62 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.61 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.53 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.53 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.46 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.35 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.26 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.23 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.18 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.09 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.08 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.07 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.04 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.91 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.8 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.74 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.73 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.72 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.72 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.56 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.39 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.37 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.29 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.29 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.26 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.24 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.22 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.2 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.18 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.1 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.06 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 94.0 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.97 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.92 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.76 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.46 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.43 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.42 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.34 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.28 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.17 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.91 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.47 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.32 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.04 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.03 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.8 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.8 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.74 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.51 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 90.89 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.85 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.99 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.98 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.66 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.64 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.49 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.2 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.19 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.09 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.06 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.01 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 88.77 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 88.73 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 88.58 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.37 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 88.33 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.03 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 87.88 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.86 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.8 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.27 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.94 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 86.85 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.68 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 86.39 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.12 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.03 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.71 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.63 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.18 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 85.02 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 84.74 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 84.43 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 84.18 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.52 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 83.23 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.22 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 83.03 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 82.38 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.36 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.21 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 81.94 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 81.82 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 80.87 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 80.42 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 80.39 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-128 Score=1101.93 Aligned_cols=672 Identities=39% Similarity=0.704 Sum_probs=658.4
Q ss_pred CCCCcchHHHHHhhccC---hHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCCCCcchHHHHH
Q 043060 26 KLLQNQPSLALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNII 102 (707)
Q Consensus 26 ~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 102 (707)
..|+..+|..++++|+. +..++++|..+++.|+.+|+.++|+|+ .+|+++|++++|.++|++|++||+++||+||
T Consensus 183 ~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li--~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li 260 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI--TMYVKCGDVVSARLVFDRMPRRDCISWNAMI 260 (857)
T ss_pred CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH--HHHhcCCCHHHHHHHHhcCCCCCcchhHHHH
Confidence 34678889999999876 788899999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChh
Q 043060 103 RGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELE 182 (707)
Q Consensus 103 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 182 (707)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+|+.+|+++|+++
T Consensus 261 ~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 340 (857)
T PLN03077 261 SGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHc
Q 043060 183 SARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH 262 (707)
Q Consensus 183 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 262 (707)
+|.++|++|..+|+++||+||.+|++.|++++|+++|++|. ..|+.||..||++++.+|++.|+++.|.++|+.+.+.
T Consensus 341 ~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~--~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~ 418 (857)
T PLN03077 341 EAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME--QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418 (857)
T ss_pred HHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHH--HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999995 4899999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHH
Q 043060 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342 (707)
Q Consensus 263 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (707)
|+.++..++|+|+++|+++|++++|.++|++|.++|+++||++|.+|++.|+.++|+++|++|.. +++||..||+.++.
T Consensus 419 g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~ 497 (857)
T PLN03077 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALS 497 (857)
T ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986 69999999999999
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 043060 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALS 422 (707)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 422 (707)
+|++.|+++.++++|..+.+.|..+ +..++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|+++|+.++|++
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~-~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~ 575 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGF-DGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVE 575 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCc-cceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999998 9999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 043060 423 LFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502 (707)
Q Consensus 423 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 502 (707)
+|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+++|
T Consensus 576 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p 655 (857)
T PLN03077 576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITP 655 (857)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCC
Confidence 99999999999999999999999999999999999999999788999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCccCCcccEEeECC
Q 043060 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGS 582 (707)
Q Consensus 503 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~ 582 (707)
|..+|++|+.+|..+|+.+.|+.+.+++++++|+++..|..|+++|+..|+|++|.++++.|+++|++|+||+|||++++
T Consensus 656 d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~ 735 (857)
T PLN03077 656 DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKG 735 (857)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCccCCccccccCchhhhhchhhhhhHHHHHHHhhccCCCCCeEEEEc
Q 043060 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLISTKPGTTIRIVK 662 (707)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~s~~la~~~~~~~~~~~~~~~~~~ 662 (707)
++|.|++||.+||+.++|+.+|+++..+|++.||+||+...+ ++++++|+..+++||||||+|||||++|+|.||||+|
T Consensus 736 ~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~k 814 (857)
T PLN03077 736 KVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTK 814 (857)
T ss_pred EEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeC
Confidence 999999999999999999999999999999999999999877 5578899999999999999999999999999999999
Q ss_pred cccccCchhHHHHHHhhhcCceEEEecCCccccccCccccCCC
Q 043060 663 NLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCND 705 (707)
Q Consensus 663 ~~~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~~s~~~ 705 (707)
|||||+|||+++||||++++|+|||||.+|||||++|+|||+|
T Consensus 815 nlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 815 NLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-121 Score=1022.35 Aligned_cols=613 Identities=36% Similarity=0.631 Sum_probs=604.2
Q ss_pred CCCcchHHHHHHHHHcCCCchHHHHHHHHHHHCC-CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 043060 92 EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSG-FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTS 170 (707)
Q Consensus 92 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 170 (707)
.++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.++|..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4678899999999999999999999999999764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCch
Q 043060 171 LINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250 (707)
Q Consensus 171 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~ 250 (707)
|+.+|+++|++++|.++|++|+.+|+++||++|.+|++.|++++|+++|++|.. .|+.||..||+.++.+|+..|..+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~--~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE--DGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999999999999999999999999999999999999999999999954 899999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043060 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330 (707)
Q Consensus 251 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (707)
.+.+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHH
Q 043060 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISG 410 (707)
Q Consensus 331 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 410 (707)
.||..||+.++.+|++.|+++.|+++|..+.+.|..+ +..++++|+++|+++|++++|.++|++|..+|+.+||+||.+
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~ 400 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL-DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC-CeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 9999999999999999999999999999999999987 999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 043060 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490 (707)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 490 (707)
|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 491 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
|.+++++|+..|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|..|+++|++.|+|++|.+++++|+++|++
T Consensus 481 A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccEEeECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCccCCccccccCchhhhhchhhhhhHHHHHHHhhc
Q 043060 571 KVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLAIAYGLI 650 (707)
Q Consensus 571 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~s~~la~~~~~~ 650 (707)
|.||+||+++++++|.|++||..||+.++|++.+.++..+|++.||+||+..+++++++++|+..+.+||||||+||||+
T Consensus 561 k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~ 640 (697)
T PLN03081 561 MHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLI 640 (697)
T ss_pred cCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEccccccCchhHHHHHHhhhcCceEEEecCCccccccCccccCCCCC
Q 043060 651 STKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGNCSCNDYW 707 (707)
Q Consensus 651 ~~~~~~~~~~~~~~~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~~s~~~~~ 707 (707)
++|+|.||||+||||+|+|||+|+||||++++|+|||||.+|||||+||+|||+|||
T Consensus 641 ~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 641 NTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred cCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-81 Score=716.62 Aligned_cols=649 Identities=25% Similarity=0.411 Sum_probs=575.0
Q ss_pred CCcchHHHHHhhccC---hHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCCCCcchHHHHHHH
Q 043060 28 LQNQPSLALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRG 104 (707)
Q Consensus 28 ~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 104 (707)
++..++..++..|.. ++.+.++|..+++.+..++..++|+|+ .+|+++|+++.|.++|++|++||+++||.+|.+
T Consensus 84 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li--~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~ 161 (857)
T PLN03077 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML--SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGG 161 (857)
T ss_pred CChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH--HHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHH
Confidence 455567777777754 788889999999999889999999999 999999999999999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHH
Q 043060 105 HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184 (707)
Q Consensus 105 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 184 (707)
|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..+.++|..+++.|+.||..++|+|+.+|+++|++++|
T Consensus 162 ~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 241 (857)
T PLN03077 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCC
Q 043060 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264 (707)
Q Consensus 185 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 264 (707)
.++|++|+.+|+++||+||.+|++.|++++|+++|++|. ..|+.||..||+.++.+|++.|+++.|.+++..+.+.|+
T Consensus 242 ~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~--~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 319 (857)
T PLN03077 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR--ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319 (857)
T ss_pred HHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHH--HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999995 489999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHH
Q 043060 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344 (707)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 344 (707)
.||..+||+|+++|+++|++++|.++|++|.++|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~ 399 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 043060 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF 424 (707)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 424 (707)
++.|+++.|.++|+.+.+.|..+ +..++++|+++|+++|++++|.++|++|..+|+++||+||.+|++.|+.++|+++|
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLIS-YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH
Q 043060 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504 (707)
Q Consensus 425 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 504 (707)
++|.. +++||..||+.++.+|++.|+++.+.+++..+.+. |+.++..++++|+++|+++|++++|.++|+++ .||.
T Consensus 479 ~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~ 554 (857)
T PLN03077 479 RQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDV 554 (857)
T ss_pred HHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCCh
Confidence 99986 59999999999999999999999999999999885 99999999999999999999999999999998 7899
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccC-CCCchhHHHHHHHhhhcCChhhHHHHHHHHh-hCCCccCCcccEEeECC
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELE-PENPGAYVLLSNMYAGAGRWDDVATIRTRLN-DKGMKKVPGCSSIEVGS 582 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~s~~~~~~ 582 (707)
.+|++++.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|. +.|+.++...-..
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~---- 630 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC---- 630 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH----
Confidence 999999999999999999999999999865 3477899999999999999999999999999 6787543321110
Q ss_pred EEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCccCCccccccCchhhhhchhhhhhHHHH-HHHhhccCCCCCeEEEE
Q 043060 583 VVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWKEGALSHHSEKLA-IAYGLISTKPGTTIRIV 661 (707)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~s~~la-~~~~~~~~~~~~~~~~~ 661 (707)
++......+.. ++..+.+++.+..||...|...+..+...+.+.- -|..+ ..+.+.+...+..+.+.
T Consensus 631 ----lv~~l~r~G~~-------~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~-~e~~a~~l~~l~p~~~~~y~ll~ 698 (857)
T PLN03077 631 ----VVDLLGRAGKL-------TEAYNFINKMPITPDPAVWGALLNACRIHRHVEL-GELAAQHIFELDPNSVGYYILLC 698 (857)
T ss_pred ----HHHHHHhCCCH-------HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhhCCCCcchHHHHH
Confidence 11111122333 3344445555799999988776666644333211 12222 22445554444444344
Q ss_pred ccccccCchhHHHHHHhhhcCc--------eEEEecCCccccccCcccc
Q 043060 662 KNLRVCGNCHSATKLISKIFNR--------EIIARDRNRFHHFKDGNCS 702 (707)
Q Consensus 662 ~~~~~c~~~~~~~~~~s~~~~~--------~~~~~~~~~~h~~~~g~~s 702 (707)
.-....|+..++.+....|..+ ..|.- .+..|-|..|--|
T Consensus 699 n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~-~~~~~~f~~~d~~ 746 (857)
T PLN03077 699 NLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV-KGKVHAFLTDDES 746 (857)
T ss_pred HHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE-CCEEEEEecCCCC
Confidence 5567789999999998877666 22222 3567788665443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-66 Score=578.11 Aligned_cols=502 Identities=19% Similarity=0.280 Sum_probs=463.2
Q ss_pred CCchhhhhhhchhhcccCCCChHHHHHHHhcCCCCCcch-----HHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccH
Q 043060 59 HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVI-----WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133 (707)
Q Consensus 59 ~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 133 (707)
.++...+..++ +.+.++|++++|+++|++|++++... ++.++.+|.+.|..++|+++|+.|.. ||..||
T Consensus 367 ~~~~~~~~~~y--~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 367 KRKSPEYIDAY--NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCchHHHHHH--HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 45666777888 88889999999999999999866554 45667789999999999999999974 999999
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCC----CCCeehHHHHHHHHHhC
Q 043060 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS----LRDAVSYTALITGYASR 209 (707)
Q Consensus 134 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~ 209 (707)
+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|. .+|..+|++||.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999998 57999999999999999
Q ss_pred CChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcCCHHHH
Q 043060 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG--HGLGSNLHVTNALIDMYSKCGDLVKA 287 (707)
Q Consensus 210 g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A 287 (707)
|++++|+++|++|. ..|+.||..||+.++.+|++.|+++.|.++|..|.+ .|+.||..+|++|+++|+++|++++|
T Consensus 521 G~~eeAl~lf~~M~--~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 521 GQVAKAFGAYGIMR--SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred cCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999995 489999999999999999999999999999999987 67899999999999999999999999
Q ss_pred HHHHHhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHh
Q 043060 288 RDLFESIEK----RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363 (707)
Q Consensus 288 ~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 363 (707)
.++|+.|.+ ++..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999985 4669999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 043060 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG----YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439 (707)
Q Consensus 364 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 439 (707)
|..+ +..+|++||.+|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 679 G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 679 GIKL-GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9988 99999999999999999999999999994 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH----HcC-------------------CHHHHHHHHH
Q 043060 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG----RAG-------------------LFDEAEALLK 496 (707)
Q Consensus 440 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~ 496 (707)
+.++.+|++.|++++|.++|+.|.+. |+.||..+|++|++++. +++ ..++|..+|+
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 99999999999999999999999876 99999999999997743 222 2467999999
Q ss_pred hC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcc-CCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCccC
Q 043060 497 TM---EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL-EPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKV 572 (707)
Q Consensus 497 ~~---~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 572 (707)
+| ++.||..+|+.++.++.+.+..+.+..+++.+... .+++..+|..|++++.+. .++|..++++|.+.|+.+.
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCC
Confidence 98 78999999999998888888899888888876543 456778999999988432 3689999999999999543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=558.47 Aligned_cols=497 Identities=16% Similarity=0.227 Sum_probs=463.6
Q ss_pred hHHHHHhhc---cChHHHHHHHHHHHHhCC-CCchhhhhhhchhhcccCCCChHHHHHHHhcCCCCCcchHHHHHHHHHc
Q 043060 32 PSLALLSKC---TNMQNIKQVHSQIIKTGL-HNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSL 107 (707)
Q Consensus 32 ~~~~~l~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 107 (707)
.+..++..+ ++++.|.++++.|.+.|. .++..+++.++ ..|.+.|.+++|.++|+.|+.||..+||.+|.+|++
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li--~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFF--KACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHH--HHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 344444444 679999999999999986 56777888888 999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHH
Q 043060 108 SSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187 (707)
Q Consensus 108 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 187 (707)
.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCC----CCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcC
Q 043060 188 FNKSS----LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG 263 (707)
Q Consensus 188 f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 263 (707)
|++|. .||.++||.||.+|++.|++++|.++|++|.....++.||..||++++.+|++.|++++|.++|+.|.+.|
T Consensus 530 f~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99996 46999999999999999999999999999964346899999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHh
Q 043060 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEK----RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339 (707)
Q Consensus 264 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 339 (707)
+.|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..+|+.
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 999999999999999999999999999999984 6899999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC----CCChHHHHHHHHHHHHcC
Q 043060 340 VLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG----YKTLASWNAMISGLAMHG 415 (707)
Q Consensus 340 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g 415 (707)
++.+|++.|++++|.++|+.|.+.|..+ +..+||.||.+|++.|++++|.++|++|. .||..+|++++.+|++.|
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999887 99999999999999999999999999984 579999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----c-------------------CCHHHHHHHHHHhHHhcCCCCCh
Q 043060 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNH----A-------------------GLLDIGRQYFNAMIQDYKISPKL 472 (707)
Q Consensus 416 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~-------------------g~~~~a~~~~~~~~~~~~~~p~~ 472 (707)
+.++|.++|++|.+.|+.||..+|+.++..|.+ . +..++|..+|++|.+. |+.||.
T Consensus 769 ~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~ 847 (1060)
T PLN03218 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GTLPTM 847 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CCCCCH
Confidence 999999999999999999999999999876542 1 2246799999999886 999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 043060 473 QHYGCMVDLLGRAGLFDEAEALLKTME---MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534 (707)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 534 (707)
.+|+.++.++.+.+..+.+..+++.|+ ..|+..+|++|+.++.+. .++|..++++|.+.+
T Consensus 848 ~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 848 EVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 999999999999999999999999984 456789999999998543 468999999999876
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-64 Score=562.20 Aligned_cols=434 Identities=25% Similarity=0.451 Sum_probs=404.9
Q ss_pred CCcchHHHHHhhccC---hHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCCCCcchHHHHHHH
Q 043060 28 LQNQPSLALLSKCTN---MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRG 104 (707)
Q Consensus 28 ~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 104 (707)
++..+|..++.+|.. .+.++++|..+.+.|+.||+.++|.|+ ++|+++|++++|.++|++|++||+++||++|.+
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li--~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~ 198 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL--LMHVKCGMLIDARRLFDEMPERNLASWGTIIGG 198 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH--HHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHH
Confidence 456778888888865 788999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHH
Q 043060 105 HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESA 184 (707)
Q Consensus 105 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 184 (707)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.++++|..+.+.|+.+|..++|+|+++|+++|++++|
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 278 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCC
Q 043060 185 RLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264 (707)
Q Consensus 185 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 264 (707)
.++|++|+.+|+++||+||.+|++.|++++|+++|++|. +.|+.||..||++++.+|++.|+++.|.++|..|.+.|+
T Consensus 279 ~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~--~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~ 356 (697)
T PLN03081 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR--DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356 (697)
T ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999995 489999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHH
Q 043060 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344 (707)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 344 (707)
.||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCchHHHHHHHHHHHh-CCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC-CCChHHHHHHHHHHHHcCCHHHHHH
Q 043060 345 AYLGALDLGKWIHAYIDKN-HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG-YKTLASWNAMISGLAMHGKADKALS 422 (707)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~ 422 (707)
++.|.+++|.++|+.|.+. |..+ +..+|+.++++|++.|++++|.++|++|+ .++..+|++|+.+|..+|+.+.|..
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKP-RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCC-CccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999999874 6665 99999999999999999999999999886 4688888888888888888888888
Q ss_pred HHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 043060 423 LFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469 (707)
Q Consensus 423 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 469 (707)
+++++.+ +.|+. .+|..+++.|++.|++++|.++++.|.+. |+.
T Consensus 516 ~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~ 560 (697)
T PLN03081 516 AAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLS 560 (697)
T ss_pred HHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCc
Confidence 8888865 55653 47777777777777777777777777654 543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-31 Score=307.41 Aligned_cols=522 Identities=14% Similarity=0.087 Sum_probs=382.8
Q ss_pred hHHHHHhhccChHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcC
Q 043060 32 PSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE---PNQVIWNNIIRGHSLS 108 (707)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 108 (707)
.+..++...+..+.+...+..+.+... .+...++.+. ..|.+.|++++|.+.|+++.+ .+...|..+...+...
T Consensus 334 ~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 410 (899)
T TIGR02917 334 LLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLG--EAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQ 410 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHH--HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Confidence 344555556678888888887776543 3556677777 788888888899888887653 3455677777888888
Q ss_pred CCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHH
Q 043060 109 SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVF 188 (707)
Q Consensus 109 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 188 (707)
|++++|++.|+.+.+.. +.+......++..+.+.|++++|..+++.+.+.. +.++.++..+...|...|++++|...|
T Consensus 411 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 411 GDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred CChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88888888888887653 2233445556677778888888888888877643 456677888888888888888888888
Q ss_pred hcCC---CCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCC
Q 043060 189 NKSS---LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLG 265 (707)
Q Consensus 189 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 265 (707)
+++. ..+...+..+...+...|++++|.+.|+++.. ..+.+..++..+...+...|+.++|...+..+.+.+ +
T Consensus 489 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 564 (899)
T TIGR02917 489 EKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT---IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-P 564 (899)
T ss_pred HHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 7654 23556677777888888888888888888752 123355667777777778888888888888777664 4
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHH
Q 043060 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342 (707)
Q Consensus 266 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (707)
.+...+..++..|.+.|++++|..+++.+.+ .+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 643 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLAD 643 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 4566777788888888888888888877753 356678888888888888888888888877643 234556666777
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHH
Q 043060 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADK 419 (707)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 419 (707)
.+...|+++.|..++..+.+..+. +...+..++..+...|++++|.++++.+.. .+...|..+...+...|++++
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELKPD--NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHH
Confidence 777788888888888887776654 667777788888888888888888877743 355567777777888888888
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 043060 420 ALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM- 498 (707)
Q Consensus 420 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 498 (707)
|++.|+++.. ..|+..++..+..++.+.|++++|.+.++.+.+ ..+.+...+..+...|.+.|++++|.+.|+++
T Consensus 722 A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 722 AIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 8888888877 445556677777777888888888888877766 34456677777777888888888888888776
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 499 EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 499 ~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
...| +..+++.++..+...|+ ++|+..++++++..|+++..+..++.+|...|++++|.++++++.+.+..
T Consensus 798 ~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 798 KKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3334 36677777777777777 66777777777777777777777777777778888888877777776553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=306.48 Aligned_cols=520 Identities=14% Similarity=0.046 Sum_probs=438.9
Q ss_pred HHHHHhhccChHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCC
Q 043060 33 SLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE---PNQVIWNNIIRGHSLSS 109 (707)
Q Consensus 33 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 109 (707)
...++...+..+.+...+..+++... .+......+. ..+.+.|++++|...+..+.. .+...|+.+...+.+.|
T Consensus 301 ~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 377 (899)
T TIGR02917 301 AGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLA--SIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALG 377 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHH--HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCC
Confidence 34445556778999999998887643 3455666677 788899999999999988754 35667888999999999
Q ss_pred CchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHh
Q 043060 110 SPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFN 189 (707)
Q Consensus 110 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 189 (707)
++++|.++|+++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +........++..|.+.|++++|..+++
T Consensus 378 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 455 (899)
T TIGR02917 378 DFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAK 455 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999998753 3355667777888889999999999999998775 2334566778889999999999999998
Q ss_pred cCCC---CCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCc
Q 043060 190 KSSL---RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS 266 (707)
Q Consensus 190 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 266 (707)
++.. .+..+|+.+...+...|++++|.+.|+++.. ..+.+...+..+...+...|++++|.+.+..+.+.. +.
T Consensus 456 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~ 531 (899)
T TIGR02917 456 KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALS---IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PK 531 (899)
T ss_pred HHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cC
Confidence 8763 3677899999999999999999999999853 122345567778888999999999999999998875 55
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHH
Q 043060 267 NLHVTNALIDMYSKCGDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343 (707)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 343 (707)
+..++..+...|.+.|+.++|...|+++.+ .+...+..++..|.+.|++++|+.+++++.... +.+..++..+...
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 610 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRA 610 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 788899999999999999999999998854 355678889999999999999999999998753 4567788889999
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHH
Q 043060 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKA 420 (707)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 420 (707)
+...|+++.|...+..+.+..+. +...+..+..+|.+.|++++|..+|+++. ..+..+|..++..+...|++++|
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQPD--SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999987765 67788899999999999999999999874 34677999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 043060 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-E 499 (707)
Q Consensus 421 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 499 (707)
.++++.+.+.+ +++...+..+...+...|++++|...|+.+... .|+..++..++.++.+.|++++|.+.++++ .
T Consensus 689 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 689 KKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999998863 445567888888999999999999999998753 455577888999999999999999999886 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 500 MKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 500 ~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
..| +..++..+...|...|+.++|...++++++..|+++.++..++.++...|+ .+|+.+++++.+...
T Consensus 765 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 765 THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 344 478889999999999999999999999999999999999999999999999 889999999987543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=218.02 Aligned_cols=106 Identities=67% Similarity=1.039 Sum_probs=96.2
Q ss_pred cccEEeECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCccCCccccccCchhhh--------hchhhhhhHHHHH
Q 043060 574 GCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEWK--------EGALSHHSEKLAI 645 (707)
Q Consensus 574 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~s~~la~ 645 (707)
||||+++ |.|++|+.+||+. ++..++...||.|++....+++.++.+ +..+.+||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899986 9999999999988 445567788999999999988877665 5678999999999
Q ss_pred HHhhccCCCCCeEEEEccc-cccCchhHHHHHHhhhcCceEEEecCCcccccc
Q 043060 646 AYGLISTKPGTTIRIVKNL-RVCGNCHSATKLISKIFNREIIARDRNRFHHFK 697 (707)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~-~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 697 (707)
||||+++ +|+||+ |||+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 889999 999999999999999999999999999999996
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-22 Score=235.58 Aligned_cols=513 Identities=11% Similarity=0.041 Sum_probs=362.0
Q ss_pred HHHHhhccChHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHcCCC
Q 043060 34 LALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE--P-NQVIWNNIIRGHSLSSS 110 (707)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~ 110 (707)
+.++...+..+.|.+.+..+++............+. ......|+.++|++.|+++.+ | +...+..+...+...|+
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~--~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWR--LVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHH--HHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 345556677899999999888654332221111112 223356899999999999875 4 44567788889999999
Q ss_pred chHHHHHHHHHHHCCC----------------C----------------CCcccHH---------------------HHH
Q 043060 111 PVVAIKFYVRMILSGF----------------V----------------PNTYTFP---------------------FIL 137 (707)
Q Consensus 111 ~~~A~~~~~~m~~~g~----------------~----------------p~~~t~~---------------------~ll 137 (707)
+++|++.|+++..... . |+...+. ...
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 9999999998864320 0 1100000 011
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCe-----ehHHHH----------
Q 043060 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA-----VSYTAL---------- 202 (707)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-----~~~~~l---------- 202 (707)
..+...|++++|...+++.++.. +.+..++..|...|.+.|++++|+..|++....+. ..|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 23445677777777777777653 34566777777777777888888777776543211 112221
Q ss_pred --HHHHHhCCChhHHHHHHHhCccccCCCCC-CHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 043060 203 --ITGYASRGYLDDARQLFDEMPIREENFVP-NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYS 279 (707)
Q Consensus 203 --i~~~~~~g~~~~A~~l~~~m~~~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 279 (707)
...+.+.|++++|+..|+++.. ..| +...+..+...+...|++++|.+.++.+++.. +.+...+..+...|.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~----~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQ----VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3345667777888887777743 223 34455566677777778888888777777653 334555666666664
Q ss_pred hcCCHHHHHHHHHhcCCCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-ChhhHHhHHHHHhc
Q 043060 280 KCGDLVKARDLFESIEKRD------------VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP-NDVTFLSVLPACAY 346 (707)
Q Consensus 280 ~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~ 346 (707)
.++.++|..+++.+.... ...+..+...+...|++++|++.|++..+. .| +...+..+...+..
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 356777777777665321 123445566778889999999999998875 34 34456667778889
Q ss_pred cCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC----ChH---------HHHHHHHHHHH
Q 043060 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK----TLA---------SWNAMISGLAM 413 (707)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~---------~~~~li~~~~~ 413 (707)
.|++++|...++.+.+..+. +...+..+...+.+.|+.++|...++.+... +.. .+..+...+..
T Consensus 508 ~G~~~~A~~~l~~al~~~P~--~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPN--DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999998887665 5555566666777889999999999887532 111 12345667888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 043060 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493 (707)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 493 (707)
.|+.++|+.+++. .+++...+..+...+.+.|++++|...|+.+.+. -+.+...+..++.+|...|++++|++
T Consensus 586 ~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 586 SGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred CCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999872 2344456777888999999999999999999873 34467889999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc------hhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 494 LLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP------GAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 494 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
.++.. ...|+ ..++..+..++...|++++|.+.++++++..|+++ ..+..++.++...|++++|++.+++..
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99986 45565 66788888899999999999999999998876544 356677999999999999999998886
Q ss_pred h
Q 043060 566 D 566 (707)
Q Consensus 566 ~ 566 (707)
.
T Consensus 739 ~ 739 (1157)
T PRK11447 739 V 739 (1157)
T ss_pred h
Confidence 4
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-22 Score=235.75 Aligned_cols=511 Identities=14% Similarity=0.075 Sum_probs=281.0
Q ss_pred ccChHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCC--CCcch-H----------------HH
Q 043060 40 CTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE--PNQVI-W----------------NN 100 (707)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~--~~~~~-~----------------~~ 100 (707)
-.+.+.+++....+..... .++.++..+. ..+.+.|+.++|.+.+++..+ |+... + ..
T Consensus 41 ~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~--~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 41 THREDLVRQSLYRLELIDP-NNPDVIAARF--RLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred hCChHHHHHHHHHHHccCC-CCHHHHHHHH--HHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHH
Confidence 3458888888888776533 3566777777 788999999999999999864 43322 1 22
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCCCCCCccc-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC
Q 043060 101 IIRGHSLSSSPVVAIKFYVRMILSGFVPNTYT-FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNG 179 (707)
Q Consensus 101 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 179 (707)
+...+...|++++|++.|+++.+.. +|+... ...........|+.++|...++.+++.. +.+...+..+...+...|
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccC
Confidence 3446888999999999999998653 444321 1111222234689999999999999875 456778889999999999
Q ss_pred ChhHHHHHHhcCCCCCe------ehH-----------------HHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhH
Q 043060 180 ELESARLVFNKSSLRDA------VSY-----------------TALITGYASRGYLDDARQLFDEMPIREENFVPNESTV 236 (707)
Q Consensus 180 ~~~~A~~~f~~~~~~~~------~~~-----------------~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~ 236 (707)
+.++|+..|+++..... ..| ...+..+-.....+.|...+..+.. ....|+...
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~--~~~dp~~~~- 272 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK--QLADPAFRA- 272 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH--hccCcchHH-
Confidence 99999999988743211 011 1111111111112233333333211 111121111
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-----hhHHH-------
Q 043060 237 VTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV-----ISWNV------- 304 (707)
Q Consensus 237 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~------- 304 (707)
......+...|++++|...++..++.. +.+..++..|...|.+.|++++|+..|++..+.+. ..|..
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 112233445566666666666666542 33455666666666666666666666666543111 11211
Q ss_pred -----HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhH
Q 043060 305 -----MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379 (707)
Q Consensus 305 -----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 379 (707)
....+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++.+.+..+. +...+..+...
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~--~~~a~~~L~~l 428 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG--NTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Confidence 1234456666666666666666542 123334444555566666666666666666665544 33344444444
Q ss_pred ------------------------------------------HHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHc
Q 043060 380 ------------------------------------------YAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMH 414 (707)
Q Consensus 380 ------------------------------------------y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 414 (707)
+...|++++|.+.|++... .+...+..+...|.+.
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4444555555555554421 1333444455555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh---------HHHHHHHHHHHH
Q 043060 415 GKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL---------QHYGCMVDLLGR 484 (707)
Q Consensus 415 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---------~~~~~li~~~~~ 484 (707)
|++++|+..|+++.+ ..|+.. .+..+...+...++.++|...++.+... ...++. ..+..+.+.+..
T Consensus 509 G~~~~A~~~l~~al~--~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 509 GQRSQADALMRRLAQ--QKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred CCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 555555555555544 233222 2222222334445555555555443211 000000 001122334445
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 485 AGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 485 ~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
.|+.++|.++++.-+ ++...+..+...+.+.|++++|+..++++++.+|+++.++..++.+|...|++++|++.++..
T Consensus 586 ~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 586 SGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred CCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555555555555321 223445556666666666666666666666666666666666666666666666666666655
Q ss_pred hhC
Q 043060 565 NDK 567 (707)
Q Consensus 565 ~~~ 567 (707)
.+.
T Consensus 664 l~~ 666 (1157)
T PRK11447 664 PAT 666 (1157)
T ss_pred hcc
Confidence 543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-22 Score=199.21 Aligned_cols=446 Identities=16% Similarity=0.131 Sum_probs=363.7
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 043060 98 WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ 177 (707)
Q Consensus 98 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 177 (707)
-..+..-..+.|++.+|.+.-...-+.. +.+......+-..+.+..+++...+--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4455666778899999998776554432 3333444444445555556665544443344332 3345689999999999
Q ss_pred CCChhHHHHHHhcCCCC---CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHH-HHhccCCchHHH
Q 043060 178 NGELESARLVFNKSSLR---DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLS-ACAHMGSLELGN 253 (707)
Q Consensus 178 ~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~-~~~~~g~~~~a~ 253 (707)
.|++++|..+++.+.+. .+..|..+..++...|+.+.|.+.|.+.+ .+.|+.....+-+. ..-..|.+++|.
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~al----qlnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEAL----QLNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHH----hcCcchhhhhcchhHHHHhhcccchhH
Confidence 99999999999977643 67899999999999999999999999984 46677665443333 334568999999
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043060 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV---ISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330 (707)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (707)
..+.+.+... +.-..+|+.|...+-..|++..|+.-|++..+-|+ .+|-.|...|...+.+++|+..|.+....
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 9988888763 22356789999999999999999999999876543 57888999999999999999999988764
Q ss_pred CCC-hhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHH
Q 043060 331 EPN-DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNA 406 (707)
Q Consensus 331 ~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~ 406 (707)
.|+ .+.+..+...|...|.++.|+..+++.+...+. -+..|+.|..++-..|++.+|.+.+.+.. .....+.+.
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~--F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~N 359 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN--FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNN 359 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC--chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHH
Confidence 564 456667777788899999999999999998887 46679999999999999999999999864 335668899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHH
Q 043060 407 MISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL-QHYGCMVDLLGR 484 (707)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~ 484 (707)
|...|...|.+++|..+|....+ +.|.-. .++.|...|-.+|++++|..-+++.+ .+.|+. ..|+.|.+.|-.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHH
Confidence 99999999999999999999998 788765 78999999999999999999999987 577764 789999999999
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHH
Q 043060 485 AGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 485 ~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 559 (707)
.|+.++|...+.+. .+.|. ....+.|...+...|++.+|+..|+.++++.|+.+.+|-.++.++.-..+|.+=.+
T Consensus 435 ~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~ 511 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDK 511 (966)
T ss_pred hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHH
Confidence 99999999999886 78887 88999999999999999999999999999999999999999998887777777433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=194.56 Aligned_cols=420 Identities=13% Similarity=0.145 Sum_probs=342.9
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCC---CCCeehHHHHHHHHHhCCC
Q 043060 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS---LRDAVSYTALITGYASRGY 211 (707)
Q Consensus 135 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~ 211 (707)
.+..-..+.|++.+|++--..+-... +.+....-.+-..+....+++....--.... ..-..+|..+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444556788888887555443332 2222233333445666666665433222221 1245689999999999999
Q ss_pred hhHHHHHHHhCccccCCCCC-CHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhH-HHHHHHHHHHhcCCHHHHHH
Q 043060 212 LDDARQLFDEMPIREENFVP-NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLH-VTNALIDMYSKCGDLVKARD 289 (707)
Q Consensus 212 ~~~A~~l~~~m~~~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~ 289 (707)
.++|+.+++.|.+ .+| ....|..+..++...|+.+.|.+.+...++. .|+.. +.+.+.......|++++|..
T Consensus 132 ~~~al~~y~~aie----l~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 132 LQDALALYRAAIE----LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HHHHHHHHHHHHh----cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 9999999999953 455 4567889999999999999999999999876 45543 44556667777899999999
Q ss_pred HHHhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-hhHHhHHHHHhccCCchHHHHHHHHHHHhCC
Q 043060 290 LFESIEKRD---VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND-VTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365 (707)
Q Consensus 290 ~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 365 (707)
.|.+..+-+ .+.|+.|...+-.+|+...|++.|++.... .|+- ..|..+-..+...+.++.|...+.......+
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 988866433 468999999999999999999999999874 5543 4677788888888899999998888877666
Q ss_pred CCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHH
Q 043060 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK---TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVG 441 (707)
Q Consensus 366 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ 441 (707)
. ...++..|...|...|.++.|+..+++..+. =...|+.|..++-..|+..+|...|.+.+. +.|+.. ..+.
T Consensus 284 n--~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~N 359 (966)
T KOG4626|consen 284 N--HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNN 359 (966)
T ss_pred c--chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHH
Confidence 5 7888999999999999999999999987543 346999999999999999999999999998 777766 8899
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 043060 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPK-LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHG 518 (707)
Q Consensus 442 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g 518 (707)
|...+...|.+++|..+|....+ +.|. ....+.|...|-.+|++++|+.-+++. .++|. ...++.+...|...|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhh
Confidence 99999999999999999998864 4554 467889999999999999999999986 89998 889999999999999
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 519 RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 519 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
+.+.|.+.+.+++..+|.-..++..|+.+|-..|+..+|+.-++...+....
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999999999999999876654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-18 Score=195.66 Aligned_cols=508 Identities=11% Similarity=0.045 Sum_probs=316.6
Q ss_pred cChHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCC--CCcchHHHHHHHHHcCCCchHHHHHH
Q 043060 41 TNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE--PNQVIWNNIIRGHSLSSSPVVAIKFY 118 (707)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~ 118 (707)
++.+.|...+..+++..+.. ..++..|. ..|.+.|+.++|+..+++..+ |+-..|..++..+ +++.+|..+|
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA--~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDN-IPLTLYLA--EAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHH--HHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 55889999999988876554 77788888 899999999999999988764 4333333333333 7777888888
Q ss_pred HHHHHCC------------------------------------CCCC--cccHHHH-HHHHhccCChHHHHHHHHHHHHh
Q 043060 119 VRMILSG------------------------------------FVPN--TYTFPFI-LKSCAKISAISEGKQIHAHVLKL 159 (707)
Q Consensus 119 ~~m~~~g------------------------------------~~p~--~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~ 159 (707)
+++.... ..|+ ..+.... .+.+...+++++|..++..+.+.
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~ 211 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ 211 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 8876542 1121 2222222 45566677788888888888877
Q ss_pred CCCCChhHHHHHHHHHHh-CCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHH
Q 043060 160 GLESDPFVHTSLINMYAQ-NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238 (707)
Q Consensus 160 g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ 238 (707)
+ +.+......|...|.. .++ +++..+++.....|...+..++..|.+.|+.++|.++++++..... -.|...++.-
T Consensus 212 ~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~-~~~~~~~~~~ 288 (987)
T PRK09782 212 N-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT-TDAQEKSWLY 288 (987)
T ss_pred C-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc-CCCccHHHHH
Confidence 6 3344556666667776 355 7777776654455788889999999999999999999999843210 0122211111
Q ss_pred ------------------------------HHHHHhccCCchHHHHH-----------------------------HHHH
Q 043060 239 ------------------------------VLSACAHMGSLELGNWV-----------------------------CSLI 259 (707)
Q Consensus 239 ------------------------------ll~~~~~~g~~~~a~~~-----------------------------~~~~ 259 (707)
++..+.+.++++.++++ ...+
T Consensus 289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 368 (987)
T PRK09782 289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLL 368 (987)
T ss_pred HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHH
Confidence 12223333333333332 1122
Q ss_pred HHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC-C-C----hhhHHHHHHHHHhcCC---HH--------------
Q 043060 260 EGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK-R-D----VISWNVMIGGYTHTSD---YK-------------- 316 (707)
Q Consensus 260 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-~----~~~~~~li~~~~~~g~---~~-------------- 316 (707)
.+. .+.+....--+.-...+.|+.++|.++|+.... + + ...-+-++..|.+.+. ..
T Consensus 369 y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 447 (987)
T PRK09782 369 YQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ 447 (987)
T ss_pred Hhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh
Confidence 221 123555555555566777888888888777654 1 1 1223345555554433 11
Q ss_pred --------H---HHHHHHHHhhcCCCC--ChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhc
Q 043060 317 --------E---ALMLFRQMLQSNIEP--NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383 (707)
Q Consensus 317 --------~---A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 383 (707)
+ +...+....... ++ +...+..+..++.. +..++|...+.......+. ......+...+...
T Consensus 448 ~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd---~~~~L~lA~al~~~ 522 (987)
T PRK09782 448 RQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD---AWQHRAVAYQAYQV 522 (987)
T ss_pred HHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc---hHHHHHHHHHHHHC
Confidence 1 222222332211 12 33344444444443 6777777766666665543 22233344445577
Q ss_pred CCHHHHHHHHhcCCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHH
Q 043060 384 GNIKAAEQVFDGMGY--KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFN 460 (707)
Q Consensus 384 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 460 (707)
|++++|...|+++.. ++...+..+...+.+.|+.++|...|++.++. .|+.. .+..+.......|++++|...++
T Consensus 523 Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 523 EDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred CCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 888888887776532 33445666666777778888888888777763 34443 23333344455678888888877
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 461 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
...+ ..|+...|..+..++.+.|++++|+..+++. ...|+ ...++.+..++...|+.++|+..++++++.+|+++
T Consensus 601 ~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 601 RSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 7764 3456677777777778888888888877775 55665 66677777777778888888888888888888877
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 539 GAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
.++..++.+|...|++++|...+++..+..
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 788888888888888888887777776544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-18 Score=194.41 Aligned_cols=477 Identities=12% Similarity=0.015 Sum_probs=336.3
Q ss_pred cccCCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHH
Q 043060 73 AVSPFGDLSYALLVFETIRE--P-NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEG 149 (707)
Q Consensus 73 ~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 149 (707)
.+...|++++|...|+...+ | +..++..+...|...|++++|+..+++..+. .|+...|..++..+ ++..+|
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA 127 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKS 127 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhH
Confidence 34456999999999998864 4 4567888999999999999999999999976 46555555555333 889999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHH--------HHhCCChhHHHHHHhcCCCC-Ceeh-HHHHHHHHHhCCChhHHHHHH
Q 043060 150 KQIHAHVLKLGLESDPFVHTSLINM--------YAQNGELESARLVFNKSSLR-DAVS-YTALITGYASRGYLDDARQLF 219 (707)
Q Consensus 150 ~~~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~f~~~~~~-~~~~-~~~li~~~~~~g~~~~A~~l~ 219 (707)
..+++++++.. +.+..++..+... |.+.+...+++. .+..... +..+ .-.+...|.+.|++++|++++
T Consensus 128 ~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 128 VTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 99999999885 4445666666665 887777777776 3333322 3333 444489999999999999999
Q ss_pred HhCccccCCCCCCHhhHHHHHHHHhc-cCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-
Q 043060 220 DEMPIREENFVPNESTVVTVLSACAH-MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR- 297 (707)
Q Consensus 220 ~~m~~~~~~~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 297 (707)
.++.+ .+ +.+..-...+-.++.. .++ +.+..++.. .+..++.+...+++.|.+.|+.++|.++++++...
T Consensus 206 ~~L~k--~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 206 NEARQ--QN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHh--cC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 99953 32 2233335556667776 366 666666442 33468889999999999999999999999887621
Q ss_pred ----ChhhHH------------------------------HHHHH-----------------------------------
Q 043060 298 ----DVISWN------------------------------VMIGG----------------------------------- 308 (707)
Q Consensus 298 ----~~~~~~------------------------------~li~~----------------------------------- 308 (707)
+..+|- .++..
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 000000 00111
Q ss_pred ----------------------------HHhcCCHHHHHHHHHHHhhc-C-CCCChhhHHhHHHHHhccCCch---HH--
Q 043060 309 ----------------------------YTHTSDYKEALMLFRQMLQS-N-IEPNDVTFLSVLPACAYLGALD---LG-- 353 (707)
Q Consensus 309 ----------------------------~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~~~~~~~~~~---~a-- 353 (707)
..+.|+.++|.++|++.... + -.++......++..+...+.+. .+
T Consensus 358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 13445566666666665541 1 1222222334555555444321 11
Q ss_pred --------------------HHHHHHHHHh-CCCCC--cHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHH--
Q 043060 354 --------------------KWIHAYIDKN-HQKLN--NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI-- 408 (707)
Q Consensus 354 --------------------~~~~~~~~~~-~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li-- 408 (707)
........+. +..++ +...+..+..++.. |+.++|...|.+.....+..++.+.
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA 516 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVA 516 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHH
Confidence 1122222222 22233 56677778887776 7888898877765433223444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH
Q 043060 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488 (707)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 488 (707)
..+.+.|++++|+..|+++.. ..|+...+..+..++.+.|+.++|..+++...+. .++....+..+...+.+.|++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~--~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISL--HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCH
Confidence 444689999999999999876 4566666677778889999999999999998763 233434444444555567999
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 489 DEAEALLKTM-EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 489 ~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
++|...+++. ...|+...|..+...+.+.|+.++|+..++++++++|+++..+..++.++...|++++|+..+++..+.
T Consensus 593 ~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 593 ELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999986 677888899999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 043060 568 GM 569 (707)
Q Consensus 568 ~~ 569 (707)
..
T Consensus 673 ~P 674 (987)
T PRK09782 673 LP 674 (987)
T ss_pred CC
Confidence 54
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-18 Score=193.52 Aligned_cols=250 Identities=15% Similarity=0.129 Sum_probs=198.5
Q ss_pred cCCHHHHHHHHHHHhhcC-CCCC-hhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHH
Q 043060 312 TSDYKEALMLFRQMLQSN-IEPN-DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389 (707)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 389 (707)
.+++++|++.|++..+.+ ..|+ ...+..+...+...|+++.|...++.++...+. ....+..+...|...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~--~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR--VTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHCCCHHHH
Confidence 467788888888887654 2332 344555566667788888888888888877655 566788888889999999999
Q ss_pred HHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 043060 390 EQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQD 465 (707)
Q Consensus 390 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 465 (707)
...|+++. ..+...|..+...+...|++++|+..|++.++ ..|+. ..+..+..++.+.|++++|...|+...+
T Consensus 385 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~- 461 (615)
T TIGR00990 385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK- 461 (615)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 99998763 34677888999999999999999999999988 56664 4677788888999999999999999876
Q ss_pred cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HH-------HHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 466 YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AA-------IWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 466 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~-------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
..+.+...|+.+..+|...|++++|++.|++. ...|+ .. .++..+..+...|++++|...++++++++|+
T Consensus 462 -~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 462 -NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred -hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 33446778888999999999999999999985 44443 11 1222223344569999999999999999999
Q ss_pred CchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
+..++..++.++.+.|++++|++.+++..+.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-19 Score=186.18 Aligned_cols=293 Identities=13% Similarity=0.099 Sum_probs=199.9
Q ss_pred HHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC---hhhHHhHHHHHhccCCch
Q 043060 278 YSKCGDLVKARDLFESIEKR---DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN---DVTFLSVLPACAYLGALD 351 (707)
Q Consensus 278 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~ 351 (707)
+...|++++|...|+++.+. +..+|..+...+...|++++|+.+++.+...+..++ ...+..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34445555555555554432 223445555555555555555555555544321111 123344444555555555
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCC--------hHHHHHHHHHHHHcCCHHHHHHH
Q 043060 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT--------LASWNAMISGLAMHGKADKALSL 423 (707)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~ 423 (707)
.|..++..+.+..+. +..+++.++.+|.+.|++++|.+.|+.+...+ ...|..++..+.+.|++++|+..
T Consensus 125 ~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 125 RAEELFLQLVDEGDF--AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHcCCcc--hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 555555555544322 55566777777777777777777777663221 12355677778888999999999
Q ss_pred HHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 043060 424 FSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMK 501 (707)
Q Consensus 424 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 501 (707)
|+++.+ ..|+. ..+..+...+.+.|++++|.++|+++.+. ........++.++.+|.+.|++++|.+.++++ ...
T Consensus 203 ~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 203 LKKALA--ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHh--HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999887 34553 46777788889999999999999998753 21122456788899999999999999999987 556
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhh---cCChhhHHHHHHHHhhCCCccCCccc
Q 043060 502 PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG---AGRWDDVATIRTRLNDKGMKKVPGCS 576 (707)
Q Consensus 502 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~s 576 (707)
|+...+..++..+.+.|++++|..+++++++..|++. .+..+...+.. .|+.+++..++++|.+++++++|...
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 8877778899999999999999999999999999775 55555555543 56999999999999999998888733
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-18 Score=181.20 Aligned_cols=286 Identities=15% Similarity=0.159 Sum_probs=205.2
Q ss_pred HHhCCChhHHHHHHHhCccccCCCCC-CHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCc---hhHHHHHHHHHHHhc
Q 043060 206 YASRGYLDDARQLFDEMPIREENFVP-NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS---NLHVTNALIDMYSKC 281 (707)
Q Consensus 206 ~~~~g~~~~A~~l~~~m~~~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~ 281 (707)
+...|++++|+..|.++.. ..| +..++..+...+...|+++.|..+++.+.+.+..+ ...++..++..|.+.
T Consensus 45 ~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLK----VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHhcCChHHHHHHHHHHHh----cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 4455566666666666632 223 23345555555556666666666666555542211 124566777778888
Q ss_pred CCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHH
Q 043060 282 GDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHA 358 (707)
Q Consensus 282 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 358 (707)
|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+.+.+..++...
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 888888888887765 3556777788888888888888888888776542221100
Q ss_pred HHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043060 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435 (707)
Q Consensus 359 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 435 (707)
....+..+...+.+.|++++|...|+++.. .+...+..++..|.+.|++++|+++|+++.+. .|+
T Consensus 179 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~ 246 (389)
T PRK11788 179 ----------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPE 246 (389)
T ss_pred ----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--Chh
Confidence 122345677778888888888888887642 34567888888999999999999999999874 444
Q ss_pred --HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 043060 436 --DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAAIWTSLLG 512 (707)
Q Consensus 436 --~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 512 (707)
..++..+..++...|++++|...++.+.+. .|+...+..++..|.+.|++++|.++++++ ...|+...++.++.
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 346788889999999999999999998763 466667788999999999999999999875 66799889998888
Q ss_pred HHHh---cCChhHHHHHHHHHHc
Q 043060 513 ACRV---HGRLELGESVAKHLLE 532 (707)
Q Consensus 513 ~~~~---~g~~~~A~~~~~~~~~ 532 (707)
.+.. .|+.+++..+++++++
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHH
Confidence 7765 5688899998888886
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-16 Score=180.85 Aligned_cols=396 Identities=11% Similarity=0.046 Sum_probs=175.6
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCC---CCCeehHHHHHHHHHhCCChhH
Q 043060 138 KSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS---LRDAVSYTALITGYASRGYLDD 214 (707)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~ 214 (707)
......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++.. ..+...+..++..+...|++++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 33334444444444444443311 2223334444444445555555555554421 2233344444455555555555
Q ss_pred HHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 043060 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI 294 (707)
Q Consensus 215 A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 294 (707)
|+..+++... ..|+...+..+..++...|+.++|...++.+.+.. +.+..++..+..++.+.|..+.|++.++..
T Consensus 102 A~~~l~~~l~----~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 102 ALVKAKQLVS----GAPDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHH----hCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 5555555531 12221114444445555555555555555555542 224444455566666666666677666665
Q ss_pred CCCChh--------hHHHHHHHH-----HhcCCH---HHHHHHHHHHhhc-CCCCChh-hHHh----HHHHHhccCCchH
Q 043060 295 EKRDVI--------SWNVMIGGY-----THTSDY---KEALMLFRQMLQS-NIEPNDV-TFLS----VLPACAYLGALDL 352 (707)
Q Consensus 295 ~~~~~~--------~~~~li~~~-----~~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~~----ll~~~~~~~~~~~ 352 (707)
.. ++. ....++... ...+++ ++|++.++.+.+. ...|+.. .+.. .+.++...++.+.
T Consensus 177 ~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 177 NL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred CC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 54 211 111111111 111223 5566666666543 1122211 1110 0222334455555
Q ss_pred HHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHH
Q 043060 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT-------LASWNAMISGLAMHGKADKALSLFS 425 (707)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~ 425 (707)
|+..++.+.+.+...|+. ....+...|...|++++|+..|+++...+ ...+..+..++.+.|++++|+.+++
T Consensus 256 A~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 555555555544321111 11113445555555555555555442211 1223334444555555555555555
Q ss_pred HHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 043060 426 RMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK---LQHYGCMVDLLGRAGLFDEAEALLKTM-EM 500 (707)
Q Consensus 426 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 500 (707)
++... .|... .+. ...-.|+ ...+..+...+...|++++|++.++++ ..
T Consensus 335 ~~~~~--~P~~~~~~~------------------------~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 335 HTINN--SPPFLRLYG------------------------SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred HHhhc--CCceEeecC------------------------CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55542 11100 000 0000111 112334444555555555555555553 22
Q ss_pred CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 501 KPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 501 ~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
.|+ ...+..++..+...|++++|++.++++++++|+++..+..++..+.+.|++++|..+++.+.+.
T Consensus 389 ~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 389 APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 333 4455555555555555555555555555555555555555555555555555555555555443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=7e-17 Score=178.94 Aligned_cols=439 Identities=12% Similarity=0.042 Sum_probs=303.8
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 043060 98 WNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ 177 (707)
Q Consensus 98 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 177 (707)
+......+.+.|++++|+..|++.++. .|+...|..+..++...|++++|...+...++.. +.+...+..+...|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445667888999999999999998864 6788888888889999999999999999988774 3456688889999999
Q ss_pred CCChhHHHHHHhcCCCC---CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHH
Q 043060 178 NGELESARLVFNKSSLR---DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254 (707)
Q Consensus 178 ~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 254 (707)
.|++++|..-|...... +......++..+........+...++.- ....|...........+ .......
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~----~~~~~~~~~~~~~~~~~----~~~~~~~ 278 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK----PENLPSVTFVGNYLQSF----RPKPRPA 278 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHc----cCCcchh
Confidence 99999998877644321 1111111221111111112233333221 22223322222222111 1111111
Q ss_pred HHHHHHHcCCCchh-HHHHHHHHHH---HhcCCHHHHHHHHHhcCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043060 255 VCSLIEGHGLGSNL-HVTNALIDMY---SKCGDLVKARDLFESIEKR------DVISWNVMIGGYTHTSDYKEALMLFRQ 324 (707)
Q Consensus 255 ~~~~~~~~g~~~~~-~~~~~li~~~---~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~ 324 (707)
-+..... ..++. ..+..+...+ ...+++++|.+.|+...+. +...|+.+...+...|++++|+..|++
T Consensus 279 ~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111110 01110 0111111111 2346899999999887642 345788888899999999999999999
Q ss_pred HhhcCCCCC-hhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCC
Q 043060 325 MLQSNIEPN-DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKT 400 (707)
Q Consensus 325 m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~ 400 (707)
..+. .|+ ...|..+...+...|+++.|...+..+++..+. +..++..+...|...|++++|...|++.. ..+
T Consensus 357 al~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 357 SIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE--DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 9875 454 456777778888999999999999999888765 78889999999999999999999999874 335
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-H-----
Q 043060 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL-Q----- 473 (707)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~----- 473 (707)
...|..+...+.+.|++++|+..|++.++ ..|+ ...+..+...+...|++++|...|+...+. .|+. .
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~ 507 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNV 507 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccH
Confidence 67888899999999999999999999988 4565 458888899999999999999999998753 2321 1
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 474 --HYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 474 --~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
.++.....+...|++++|.+++++. ...|+ ...+..++..+...|++++|...+++++++.+.....+
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~-------- 579 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV-------- 579 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------
Confidence 1222223344579999999999985 66676 66789999999999999999999999999877543322
Q ss_pred hcCChhhHHHHHHHHhh
Q 043060 550 GAGRWDDVATIRTRLND 566 (707)
Q Consensus 550 ~~g~~~~a~~~~~~m~~ 566 (707)
....+.+|.++..+..+
T Consensus 580 ~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 580 QAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 22244456555554443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-17 Score=181.43 Aligned_cols=351 Identities=10% Similarity=0.017 Sum_probs=260.6
Q ss_pred hCCChhHHHHHHhcCCCC------CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCch
Q 043060 177 QNGELESARLVFNKSSLR------DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLE 250 (707)
Q Consensus 177 ~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~ 250 (707)
+..+++.-.-+|..-++. +..-....+..+.+.|++++|+.+++..+. ..+-+...+..++.++...|+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~---~~p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVL---TAKNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHH---hCCCchhHHHHHhhhHhhcCCHH
Confidence 445555555555544432 233445566777888888888888888742 22223334555556666788888
Q ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043060 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327 (707)
Q Consensus 251 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (707)
.|...++.+.+.. +.+...+..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|...++.+..
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 8888888888774 44567788888888999999999999888764 3566788888889999999999999888866
Q ss_pred cCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHH
Q 043060 328 SNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASW 404 (707)
Q Consensus 328 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~ 404 (707)
.. |+.......+..+...|++++|...+..+.+..... +......+...+.+.|++++|...|++.. ..+...+
T Consensus 173 ~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~-~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~ 249 (656)
T PRK15174 173 EV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALE-RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALR 249 (656)
T ss_pred hC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 53 322222222334677889999998888887765433 44455566778888999999999998764 3366788
Q ss_pred HHHHHHHHHcCCHHH----HHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 043060 405 NAMISGLAMHGKADK----ALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479 (707)
Q Consensus 405 ~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 479 (707)
..+...|...|++++ |+..|++..+ ..|+.. .+..+...+...|++++|...++...+. -+.+...+..+.
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La 325 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 888899999999885 7999999988 566654 7888888999999999999999998763 233556677788
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 480 DLLGRAGLFDEAEALLKTM-EMKPDAAI-WTSLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
.+|.+.|++++|.+.++++ ...|+... +..+..++...|+.++|...++++++..|++.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999999886 45676433 44456778899999999999999999988754
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-17 Score=180.27 Aligned_cols=354 Identities=11% Similarity=0.023 Sum_probs=282.8
Q ss_pred HhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHH
Q 043060 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286 (707)
Q Consensus 207 ~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 286 (707)
.+..+++.-.-+|..-.++...-.-+......++..+.+.|+.+.|..++..++... +.+......++......|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 445566655555555432212222234456667788889999999999999998875 3345556666677778999999
Q ss_pred HHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-hhhHHhHHHHHhccCCchHHHHHHHHHHH
Q 043060 287 ARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN-DVTFLSVLPACAYLGALDLGKWIHAYIDK 362 (707)
Q Consensus 287 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 362 (707)
|...|+++.+ .+...|..+...+.+.|++++|+..|+++.+. .|+ ...+..+...+...|+.+.|...+..+..
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999875 35678888999999999999999999999875 454 55677788889999999999999998888
Q ss_pred hCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-h
Q 043060 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK----TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-I 437 (707)
Q Consensus 363 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 437 (707)
..+.. ...+..+. .+...|++++|...++.+... +...+..+...+...|++++|+..|+++.+ ..|+. .
T Consensus 173 ~~P~~--~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~~~ 247 (656)
T PRK15174 173 EVPPR--GDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDGAA 247 (656)
T ss_pred hCCCC--HHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHH
Confidence 77764 33444443 478899999999999986432 333455567788999999999999999998 45554 4
Q ss_pred HHHHHHHHHhccCCHHH----HHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDI----GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLL 511 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll 511 (707)
.+..+...+...|++++ |...|+.+.+ ..+.+...+..+...+.+.|++++|...+++. ...|+ ...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 77788889999999986 8999999876 23346778999999999999999999999986 55676 67888899
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
.++...|++++|...++++++.+|+++..+..++.++...|++++|...+++..+....
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 99999999999999999999999988877777899999999999999999998876553
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.3e-17 Score=182.01 Aligned_cols=373 Identities=13% Similarity=0.065 Sum_probs=251.4
Q ss_pred CCChhHHHHHHHHHHhCCChhHHHHHHhcCCC-C--CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCC-CHhhHH
Q 043060 162 ESDPFVHTSLINMYAQNGELESARLVFNKSSL-R--DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP-NESTVV 237 (707)
Q Consensus 162 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p-~~~t~~ 237 (707)
+.++....-.+......|+.++|++++.+... . +...+..+...+...|++++|.++|++.+. ..| +...+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~ 87 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALS----LEPQNDDYQR 87 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHH
Confidence 44555556667777888999999999987664 2 444588888899999999999999998743 334 345566
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCC
Q 043060 238 TVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR---DVISWNVMIGGYTHTSD 314 (707)
Q Consensus 238 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~ 314 (707)
.+...+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|+..++++.+. +...+..+...+...|.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 77777888899999999999888773 44555 888888888999999999998887642 45566677778888888
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCH---HHHHH
Q 043060 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI---KAAEQ 391 (707)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~---~~A~~ 391 (707)
.++|++.++.... .|+.... +.. .. . ...+...+.......+++ ++|++
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~---l~~-------~~----~-----------~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRD---LEA-------DA----A-----------AELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHH---HHH-------HH----H-----------HHHHHhhcccccChhHHHHHHHHHHH
Confidence 8888888876653 3331000 000 00 0 000000111111122222 45555
Q ss_pred HHhcCCC---CChH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHhccCCHHHHHHHHH
Q 043060 392 VFDGMGY---KTLA-------SWNAMISGLAMHGKADKALSLFSRMIGEGLQ-PDDITFVGVLSACNHAGLLDIGRQYFN 460 (707)
Q Consensus 392 ~~~~~~~---~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~ 460 (707)
.++.+.. .++. .+...+..+...|++++|+..|+++.+.+.. |+.. ...+..++...|++++|...|+
T Consensus 218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 218 QYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILT 296 (765)
T ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHH
Confidence 5554431 1111 1111133445667888888888888775422 3322 2224667778888888888888
Q ss_pred HhHHhcCCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-------------CC---HHHHHHHHHHHHhcCChh
Q 043060 461 AMIQDYKISP--KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMK-------------PD---AAIWTSLLGACRVHGRLE 521 (707)
Q Consensus 461 ~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-------------p~---~~~~~~ll~~~~~~g~~~ 521 (707)
.+.+.....+ .......+..++...|++++|.+.++++ ... |+ ...+..+...+...|+++
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 7765311111 1344556666778888888888888776 222 23 235567778889999999
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 522 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+|++.++++++..|.++..+..++.++...|+.++|++.+++..+..+
T Consensus 377 eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P 424 (765)
T PRK10049 377 QAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP 424 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999987654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.2e-16 Score=162.01 Aligned_cols=513 Identities=13% Similarity=0.100 Sum_probs=365.5
Q ss_pred hHHHHHHHHHHHHh--CCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCCCCcchHHHHHHHH------HcCCCchHH
Q 043060 43 MQNIKQVHSQIIKT--GLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGH------SLSSSPVVA 114 (707)
Q Consensus 43 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~------~~~g~~~~A 114 (707)
...+..+|..++.. ...+|+.+... ..+.++|+.+.|+..|.+..+-|+..-++++.-. .....+..+
T Consensus 180 Y~~al~yyk~al~inp~~~aD~rIgig----~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~ 255 (1018)
T KOG2002|consen 180 YRGALKYYKKALRINPACKADVRIGIG----HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKG 255 (1018)
T ss_pred HHHHHHHHHHHHhcCcccCCCccchhh----hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHH
Confidence 56667777775554 33456554322 3356889999999999888775554444444211 122334456
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhCCChhHHHHHHhcCC
Q 043060 115 IKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLES--DPFVHTSLINMYAQNGELESARLVFNKSS 192 (707)
Q Consensus 115 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 192 (707)
+.++...-... +-|+...+.|.+-+.-.|+++.+..+...++..-... -...|--+..+|...|++++|...|.+..
T Consensus 256 ~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 256 VQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 66665555432 4477788888888888899999999988888764211 12346678888999999999999987655
Q ss_pred CC---C-eehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCC-CHhhHHHHHHHHhccC----CchHHHHHHHHHHHcC
Q 043060 193 LR---D-AVSYTALITGYASRGYLDDARQLFDEMPIREENFVP-NESTVVTVLSACAHMG----SLELGNWVCSLIEGHG 263 (707)
Q Consensus 193 ~~---~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p-~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~g 263 (707)
.. + +..+--|...|.+.|+.+.+...|+.... ..| +..|...+...|+..+ ..+.|..++....+.-
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k----~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK----QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH----hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 33 2 45566788889999999999999999852 334 4456666666666654 4566666666666653
Q ss_pred CCchhHHHHHHHHHHHhcCCH------HHHHHHHHhcC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCCCC
Q 043060 264 LGSNLHVTNALIDMYSKCGDL------VKARDLFESIE-KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS---NIEPN 333 (707)
Q Consensus 264 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~ 333 (707)
+.|...|-.+..+|-...-+ ..|..++..-. ...+...|.+...+...|++++|...|.+.... ...+|
T Consensus 411 -~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 -PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred -cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 55777888777777665443 33333333222 345678888999999999999999999988764 12333
Q ss_pred h-----hhH-HhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHH
Q 043060 334 D-----VTF-LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASW 404 (707)
Q Consensus 334 ~-----~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~ 404 (707)
. .|. -.+....-..++.+.|.+++..+++..+. -+..|--|+.+.-..+...+|...+.... ..++..|
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~--YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ar 567 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG--YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNAR 567 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch--hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHH
Confidence 3 222 22333445667899999999999998776 45555555555555678889998888764 4577889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhc------------cCCHHHHHHHHHHhHHhcCCCCC
Q 043060 405 NAMISGLAMHGKADKALSLFSRMIGEG-LQPDDITFVGVLSACNH------------AGLLDIGRQYFNAMIQDYKISPK 471 (707)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p~ 471 (707)
..+...+.....+..|.+-|....+.- ..+|..+..+|.+.|.. .+..++|++.|..+.+ ..+.+
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN 645 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKN 645 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcch
Confidence 888888998888888888777766532 34677787778776543 3457788888888876 44557
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccC--CCCchhHHHHHHH
Q 043060 472 LQHYGCMVDLLGRAGLFDEAEALLKTME--MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE--PENPGAYVLLSNM 547 (707)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~ 547 (707)
...-+.+.-.++..|++.+|..+|.+.. ..-...+|..+...|...|++..|+++|+..++.. .+++.+...|+.+
T Consensus 646 ~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 646 MYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 7788888899999999999999999872 22346789999999999999999999999998753 4577888899999
Q ss_pred hhhcCChhhHHHHHHHHhhCCC
Q 043060 548 YAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+.+.|++.+|.+.........+
T Consensus 726 ~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHhhhHHHHHHHHHHHHHhCC
Confidence 9999999999998887776544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.7e-15 Score=162.69 Aligned_cols=435 Identities=13% Similarity=0.063 Sum_probs=251.5
Q ss_pred cccCCCChHHHHHHHhcCCC--CCcc-hHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCccc-HHHH--HHHHhccCCh
Q 043060 73 AVSPFGDLSYALLVFETIRE--PNQV-IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYT-FPFI--LKSCAKISAI 146 (707)
Q Consensus 73 ~y~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~l--l~~~~~~~~~ 146 (707)
...+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.. .|+... +..+ ...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 45567777777777777654 3321 12266666666677777777777665 232222 2222 3355566777
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHh--CCChhHHHHHHHhCcc
Q 043060 147 SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYAS--RGYLDDARQLFDEMPI 224 (707)
Q Consensus 147 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~ 224 (707)
++|.++++.+++.. +.++.++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++..
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 77777777776664 33345555666666666666666666666654433322223333333 3344346666666632
Q ss_pred ccCCCCC-CHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHH
Q 043060 225 REENFVP-NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWN 303 (707)
Q Consensus 225 ~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 303 (707)
..| +...+..+..+..+.|-...|.++...- |+.++-...... +.+.|-+..+.-..+.
T Consensus 198 ----~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~----- 257 (822)
T PRK14574 198 ----LAPTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMAVLPT----- 257 (822)
T ss_pred ----hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhccccc-----
Confidence 233 2333445555555555555554443331 111111000000 0111111111000000
Q ss_pred HHHHHHHhcCC---HHHHHHHHHHHhhc-CCCCCh-hhH----HhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHh
Q 043060 304 VMIGGYTHTSD---YKEALMLFRQMLQS-NIEPND-VTF----LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWT 374 (707)
Q Consensus 304 ~li~~~~~~g~---~~~A~~~~~~m~~~-g~~p~~-~t~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 374 (707)
-....+ .+.|+.-++.+... +..|.. .-| .-.+-++...++...+...++.+...+... ...+--
T Consensus 258 -----~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~-P~y~~~ 331 (822)
T PRK14574 258 -----RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM-PDYARR 331 (822)
T ss_pred -----ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC-CHHHHH
Confidence 000111 24455555555431 222321 111 123446667777777888888777777655 455677
Q ss_pred HHhhHHHhcCCHHHHHHHHhcCCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------------C
Q 043060 375 SLIDMYAKCGNIKAAEQVFDGMGYK---------TLASWNAMISGLAMHGKADKALSLFSRMIGEG-------------L 432 (707)
Q Consensus 375 ~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~ 432 (707)
++.++|...+++++|..+|+.+... +......|.-+|...+++++|..+++++.+.- .
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 7888888888888888888776321 22334667788888888888888888887721 1
Q ss_pred CCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 043060 433 QPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTS 509 (707)
Q Consensus 433 ~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ 509 (707)
.||-. .+..++..+...|++.+|++.++++.. .-+-|......+.+++...|++.+|++.++.. ...|+ ..+...
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 12222 234455667788888888888888865 34447778888888888888888888888765 45565 566667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 043060 510 LLGACRVHGRLELGESVAKHLLELEPENPGA 540 (707)
Q Consensus 510 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 540 (707)
.+.+....|++++|..+.+.+++..|+++.+
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 7778888888888888888888888887643
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-14 Score=153.83 Aligned_cols=479 Identities=13% Similarity=0.081 Sum_probs=343.9
Q ss_pred hHHHHHHHhcCCC--CCcchHHHHHH--HHHcCCCchHHHHHHHHHHHC--CCCCCcccHHHHHHHHhccCChHHHHHHH
Q 043060 80 LSYALLVFETIRE--PNQVIWNNIIR--GHSLSSSPVVAIKFYVRMILS--GFVPNTYTFPFILKSCAKISAISEGKQIH 153 (707)
Q Consensus 80 ~~~A~~~f~~~~~--~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 153 (707)
++.|.+.|....+ |+-+ .-.+.. .....+++..|+.+|...+.. ..+||... .+-.++.+.++.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 5889888888764 3322 122333 335668999999999997754 24555543 2335567899999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhCC---ChhHHHHHHhcC---CCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccC
Q 043060 154 AHVLKLGLESDPFVHTSLINMYAQNG---ELESARLVFNKS---SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREE 227 (707)
Q Consensus 154 ~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 227 (707)
....+... .++.++..|.-+-.... .+..+..++... ...|++..+.|..-|.-.|+++.+..+...+.....
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 99987641 22333333333222233 344555555533 244899999999999999999999999988853111
Q ss_pred CCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHH
Q 043060 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR---DVISWNV 304 (707)
Q Consensus 228 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 304 (707)
.-..-...|-.+.+++-..|+++.|.+.|-...+..-..-+..+-.|..+|.+.|+++.|...|+.+.+. +..+...
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i 381 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI 381 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence 1112234588899999999999999999998887642222445567899999999999999999998753 4556666
Q ss_pred HHHHHHhcC----CHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHH----HHhCCCCCcHHHHhHH
Q 043060 305 MIGGYTHTS----DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYI----DKNHQKLNNVSLWTSL 376 (707)
Q Consensus 305 li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~l 376 (707)
+...|...+ ..++|..++.+..+.- .-|...|..+...+... +.......+..+ ...+... .+.+.|.+
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~i-p~E~LNNv 458 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQI-PPEVLNNV 458 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCC-CHHHHHhH
Confidence 777777665 4577777777776643 33555666555555433 333334444433 3445554 78899999
Q ss_pred hhHHHhcCCHHHHHHHHhcCCCC-------Ch------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHH
Q 043060 377 IDMYAKCGNIKAAEQVFDGMGYK-------TL------ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGV 442 (707)
Q Consensus 377 i~~y~~~g~~~~A~~~~~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l 442 (707)
...+...|++++|...|...... |. .+--.+...+-..++++.|.+.|..... ..|+.+ .|..+
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp~YId~ylRl 536 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHPGYIDAYLRL 536 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCchhHHHHHHh
Confidence 99999999999999999876322 22 2233355666778899999999999998 678776 56666
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh--
Q 043060 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM----EMKPDAAIWTSLLGACRV-- 516 (707)
Q Consensus 443 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~-- 516 (707)
+...-..+...+|...++.... ....++..++.+.+.+.+...+.-|.+-|+.. ...+|..+.-+|++.|..
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 5444456788999999999877 55566777777888999988888888855543 345788888888886643
Q ss_pred ----------cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 517 ----------HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 517 ----------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.+..++|++.|.++++.+|.|..+-+.++-+++..|+|.+|..+|.++++...
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 24578899999999999999999999999999999999999999999998765
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-14 Score=160.86 Aligned_cols=435 Identities=10% Similarity=0.004 Sum_probs=289.1
Q ss_pred HHcCCCchHHHHHHHHHHHCCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhH
Q 043060 105 HSLSSSPVVAIKFYVRMILSGFVPNTY-TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELES 183 (707)
Q Consensus 105 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 183 (707)
..+.|++..|++.|++..+. .|+.. ....++..+...|+.++|...++..+.. -.........+...|...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 45778888888888887765 34431 2226667777778888888877777611 11122223333556777788888
Q ss_pred HHHHHhcCCCC---CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHH
Q 043060 184 ARLVFNKSSLR---DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIE 260 (707)
Q Consensus 184 A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 260 (707)
|.++|+++... +...+..++..+.+.++.++|++.++++. ...|+...+..++..+...++..+|.+.++.+.
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~----~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA----ERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc----ccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 88888776543 45556667777777788888888888773 345555555333333333455545777777777
Q ss_pred HcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHh
Q 043060 261 GHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR-DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLS 339 (707)
Q Consensus 261 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 339 (707)
+.. +.+...+..++....+.|-...|.++..+-++- +...+.- + +.+.|.+..+. +..++..
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~-l-------~~~~~a~~vr~----a~~~~~~---- 259 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQ-L-------ERDAAAEQVRM----AVLPTRS---- 259 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHH-H-------HHHHHHHHHhh----ccccccc----
Confidence 764 445666677777777777777777776654421 1111100 0 01122222211 1111100
Q ss_pred HHHHHhccCC---chHHHHHHHHHHHhCCC-CCc-HHHHh---HHhhHHHhcCCHHHHHHHHhcCCCCC----hHHHHHH
Q 043060 340 VLPACAYLGA---LDLGKWIHAYIDKNHQK-LNN-VSLWT---SLIDMYAKCGNIKAAEQVFDGMGYKT----LASWNAM 407 (707)
Q Consensus 340 ll~~~~~~~~---~~~a~~~~~~~~~~~~~-~~~-~~~~~---~li~~y~~~g~~~~A~~~~~~~~~~~----~~~~~~l 407 (707)
.... .+.+..-++.+...-.. |+. ..... -.+-++.+.|+..++++.|+.++... ..+-..+
T Consensus 260 ------~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 260 ------ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ------chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 0111 23444444444442222 211 11122 33556778999999999999997432 2355678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-----CCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----------CCCCh
Q 043060 408 ISGLAMHGKADKALSLFSRMIGEGL-----QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK----------ISPKL 472 (707)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~~ 472 (707)
..+|...+++++|+.+|+++....- .++......|..++..++++++|..+++.+.+... -.|+.
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 8999999999999999999976431 22333457889999999999999999999976311 01222
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 473 ---QHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 473 ---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
..+..++..+...|++.+|++.++++ ...| |...+..+...+...|++..|++.++.+..++|++..+...++..
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 23455678889999999999999997 4445 588999999999999999999999999999999999999999999
Q ss_pred hhhcCChhhHHHHHHHHhhCCC
Q 043060 548 YAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+...|+|++|..+.+.+.+...
T Consensus 494 al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhhCC
Confidence 9999999999999988877654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-12 Score=124.25 Aligned_cols=302 Identities=15% Similarity=0.160 Sum_probs=185.8
Q ss_pred cchHHHHHhhccChHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHH-------------------------HH
Q 043060 30 NQPSLALLSKCTNMQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSY-------------------------AL 84 (707)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~-------------------------A~ 84 (707)
...+..+++. +.+.++--+++.|...|.+-+..+...|+++-.|-....+.- |.
T Consensus 119 E~nL~kmIS~-~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd 197 (625)
T KOG4422|consen 119 ENNLLKMISS-REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD 197 (625)
T ss_pred hhHHHHHHhh-cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence 3344444432 237778888999988888777776666664333333222211 11
Q ss_pred HHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC
Q 043060 85 LVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESD 164 (707)
Q Consensus 85 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 164 (707)
-+|+..| +...++..||+++++-...+.|.++|++-.....+.+..+||.+|.+.. +..++++..+|+.....||
T Consensus 198 L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 198 LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCc
Confidence 2233332 3445778888888888888888888888877767778888888877644 3334778888888888888
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHh
Q 043060 165 PFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244 (707)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~ 244 (707)
..|+|++++..++.|+++.|++.+ ++++.+| ++-|+.|...+|..++..+.
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aa---------------------------lqil~Em--KeiGVePsLsSyh~iik~f~ 323 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAA---------------------------LQILGEM--KEIGVEPSLSSYHLIIKNFK 323 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHH---------------------------HHHHHHH--HHhCCCcchhhHHHHHHHhc
Confidence 888888888888888877765443 3444444 22455555555555554444
Q ss_pred ccCCchH-HHHHHHHHHH----cCCCc----hhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------ChhhHHH
Q 043060 245 HMGSLEL-GNWVCSLIEG----HGLGS----NLHVTNALIDMYSKCGDLVKARDLFESIEKR-----------DVISWNV 304 (707)
Q Consensus 245 ~~g~~~~-a~~~~~~~~~----~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~ 304 (707)
+.++..+ +..+...+.. ..+.| |..-+..-++.+.+..+.+-|.++-.-.... ...-|..
T Consensus 324 re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~ 403 (625)
T KOG4422|consen 324 RESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRK 403 (625)
T ss_pred ccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHH
Confidence 4444322 2222222211 11111 2223333344444444444444443332211 1223555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCC
Q 043060 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366 (707)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (707)
+....++....+.-+.+|+.|.-.-.-|+..+...++++....+.++....++..++..|..
T Consensus 404 ~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 404 FFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 66777888888888999999988878888889888999888888888888888887776654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.1e-14 Score=134.54 Aligned_cols=273 Identities=13% Similarity=0.121 Sum_probs=205.3
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhhHHHHH-----HHHHh-cCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCC
Q 043060 276 DMYSKCGDLVKARDLFESIEKRDVISWNVMI-----GGYTH-TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349 (707)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 349 (707)
.-|.+.|+++.|.+++.-..++|..+-.+.. --|.+ ..++..|.+.-+..+... +-+....+.--+.....|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 4578889999999888887776544332221 22233 335666766666554322 1222222222223345688
Q ss_pred chHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043060 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSR 426 (707)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (707)
++.|...+...+..... -......+.-.+-+.|++++|+++|-++. ..++...-.+.+.|....+...|++++.+
T Consensus 506 ~dka~~~ykeal~ndas--c~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDAS--CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchH--HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 99999999988887655 33344445667888999999999998763 45677777888889999999999999988
Q ss_pred HHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH
Q 043060 427 MIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAA 505 (707)
Q Consensus 427 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~ 505 (707)
.... ++.|+..+..|...|-+.|+-..|.+.+-.--+ =++-+.++...|..-|....-+++|+..|++. -++|+..
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 8773 444556888899999999999999988765432 34448888888999999999999999999997 5789999
Q ss_pred HHHHHHHHH-HhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCCh
Q 043060 506 IWTSLLGAC-RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554 (707)
Q Consensus 506 ~~~~ll~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 554 (707)
-|..++..| ++.|+++.|..+|+..-...|.+....-.|..++...|.-
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 999999877 5689999999999999999999999999999998888753
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-11 Score=124.93 Aligned_cols=458 Identities=12% Similarity=0.070 Sum_probs=332.4
Q ss_pred HHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHH----HhCCCCChhHHHHHHHHHHhCCC
Q 043060 105 HSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVL----KLGLESDPFVHTSLINMYAQNGE 180 (707)
Q Consensus 105 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g~ 180 (707)
|++..-|+.|..+++...+. ++.+...|.+....=-..|+.+...++.+..+ ..|+.-+...|-.=...+-+.|.
T Consensus 416 larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 34444455555555555543 44455555555544445555555555544322 23444444444444444444444
Q ss_pred hhHHHHHHhcCC-----CC-CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCC-CHhhHHHHHHHHhccCCchHHH
Q 043060 181 LESARLVFNKSS-----LR-DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP-NESTVVTVLSACAHMGSLELGN 253 (707)
Q Consensus 181 ~~~A~~~f~~~~-----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~ 253 (707)
.-.+..+..... +. --.+|+.-...|.+.+.++-|..+|...+ .+.| +...|......--..|..+.-.
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al----qvfp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL----QVFPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH----hhccchhHHHHHHHHHHHhcCcHHHHH
Confidence 444444443222 11 23467777777777788888888887774 2344 3444555555555667788888
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043060 254 WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR---DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330 (707)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (707)
.++..++..- +-....|-..+.-+...|++..|+.++....+. +...|-+-+.....+.+++.|..+|.+... .
T Consensus 571 Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~ 647 (913)
T KOG0495|consen 571 ALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--I 647 (913)
T ss_pred HHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--c
Confidence 8888887762 445566777777788889999999888877643 456788888888899999999999998876 4
Q ss_pred CCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHH
Q 043060 331 EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAM 407 (707)
Q Consensus 331 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 407 (707)
.|+...|..-+..--..+..++|.++++..++.-+. -...|-.+.+.+-+.++++.|.+.|..-.. ..+..|-.+
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~--f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL 725 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD--FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL 725 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc--hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH
Confidence 577777766666666778899999999999888776 566788899999999999999998876543 355688888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcC
Q 043060 408 ISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG 486 (707)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 486 (707)
...=-+.|..-.|..++++.+-. .| |...|...+..-.+.|+.+.|..+...+.+ ..+.+...|..-|.+..+.+
T Consensus 726 akleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcc
Confidence 88888889999999999998874 44 445788888899999999999999988887 55567788888888888888
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 487 LFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 487 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
+-..+.+.+++.. -|+.+..++...+....+++.|.+.|+++++.+|++..+|..+-..+.+.|.-++-.+++++-..
T Consensus 802 rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 802 RKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred cchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 8777777777764 35667778888888999999999999999999999999999999999999999999999988776
Q ss_pred CCCccCCcccEEeE
Q 043060 567 KGMKKVPGCSSIEV 580 (707)
Q Consensus 567 ~~~~~~~~~s~~~~ 580 (707)
... .-|..|..+
T Consensus 880 ~EP--~hG~~W~av 891 (913)
T KOG0495|consen 880 AEP--THGELWQAV 891 (913)
T ss_pred cCC--CCCcHHHHH
Confidence 543 445667654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.5e-12 Score=120.97 Aligned_cols=439 Identities=13% Similarity=0.147 Sum_probs=258.6
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH--hccCChHHH-HHHHHHHHHhCCCCChhHHHHH
Q 043060 95 QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC--AKISAISEG-KQIHAHVLKLGLESDPFVHTSL 171 (707)
Q Consensus 95 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 171 (707)
+++=|.|+. +..+|...++.-+|+.|...|++.+...-..|++.. ....++.-+ .+.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 345566555 445688999999999999999877776655555542 333333322 23344444444 2233333
Q ss_pred HHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchH
Q 043060 172 INMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLEL 251 (707)
Q Consensus 172 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~ 251 (707)
|.|++.+ ++-+...+...++..||.++++--..+.|.+++++- +....+.+..+|+.++.+-+- ..
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~--~~~k~kv~~~aFN~lI~~~S~----~~ 256 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEH--RAAKGKVYREAFNGLIGASSY----SV 256 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHH--HHhhheeeHHhhhhhhhHHHh----hc
Confidence 3455544 444555567789999999999999999999999998 447788899999999987543 33
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHH----hcC----CCChhhHHHHHHHHHhcCCHHH-HHHHH
Q 043060 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE----SIE----KRDVISWNVMIGGYTHTSDYKE-ALMLF 322 (707)
Q Consensus 252 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~ 322 (707)
++++..+|....+.||..|+|+++.+..+.|+++.|.+.+- +|+ +|...+|..+|..+++.++..+ |..++
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 48899999999999999999999999999999888766543 333 4667788888888888777644 44455
Q ss_pred HHHhh----cCCCC----ChhhHHhHHHHHhccCCchHHHHHHHHHHHhC------CCCCcHHHHhHHhhHHHhcCCHHH
Q 043060 323 RQMLQ----SNIEP----NDVTFLSVLPACAYLGALDLGKWIHAYIDKNH------QKLNNVSLWTSLIDMYAKCGNIKA 388 (707)
Q Consensus 323 ~~m~~----~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~y~~~g~~~~ 388 (707)
.+.+. +.++| |...|...+..|.+..+.+.|.+++..+.... ........|..+..+.+....++.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433 22222 34456777778888888888888877765431 111022334455556666666666
Q ss_pred HHHHHhcCCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 389 AEQVFDGMGY----KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 389 A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
-...++.|.. ++..+-..++.+..-.|.++-.-++|..|+..|..-+...-.-++...++.
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~--------------- 481 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD--------------- 481 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC---------------
Confidence 6666666643 233444445555555666666666666666554332222222222222211
Q ss_pred hcCCCCChHHHHHHHHHHHHc-CCHHHHHH-HHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccC---CCCc
Q 043060 465 DYKISPKLQHYGCMVDLLGRA-GLFDEAEA-LLKTM-EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE---PENP 538 (707)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~-g~~~~A~~-~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---p~~~ 538 (707)
...|+...-..+-....++ -++.++.+ ...++ ..+-.....+..+-.+.+.|..++|-+++...++.+ |..|
T Consensus 482 --k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p 559 (625)
T KOG4422|consen 482 --KLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSP 559 (625)
T ss_pred --CCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCc
Confidence 1112111111111111110 01111111 11111 111224445555555667777777777776665432 3222
Q ss_pred --hhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 539 --GAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 539 --~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.+..-+.+.-........|..+++-|...+.
T Consensus 560 ~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 560 LLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 2233444555556666667777776655444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-10 Score=115.77 Aligned_cols=421 Identities=13% Similarity=0.135 Sum_probs=339.2
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCC---CCCeehHHHHHHHHHhCCChh
Q 043060 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS---LRDAVSYTALITGYASRGYLD 213 (707)
Q Consensus 137 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~ 213 (707)
-++.....+.+.|+.++...++.- +.+.. |.-+|++...++.|.+++++.. ..+...|.+-...=-.+|+.+
T Consensus 383 WKaAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~ 457 (913)
T KOG0495|consen 383 WKAAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVD 457 (913)
T ss_pred HHHHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHH
Confidence 344555667777888888888762 33333 4445666777888888887554 448888988888778899988
Q ss_pred HHHHHHHhCcc--ccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCch--hHHHHHHHHHHHhcCCHHHHHH
Q 043060 214 DARQLFDEMPI--REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN--LHVTNALIDMYSKCGDLVKARD 289 (707)
Q Consensus 214 ~A~~l~~~m~~--~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~ 289 (707)
...+++++-+. ...|+..+...|..=..+|-..|..-.+..+...++..|+... ..+|+.-.+.+.+.+.++-|+.
T Consensus 458 mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carA 537 (913)
T KOG0495|consen 458 MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARA 537 (913)
T ss_pred HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHH
Confidence 88887765321 2378899999999989999999999999999999998887653 4688888899999999999999
Q ss_pred HHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCC
Q 043060 290 LFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366 (707)
Q Consensus 290 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (707)
+|....+ .+...|...+..--..|..++-..+|++....- +-....|.......-..|++..|+.++..+.+..+.
T Consensus 538 Vya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 538 VYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 9988775 356788888887788899999999999998863 223344444455566779999999999999998877
Q ss_pred CCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHH
Q 043060 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG--YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVL 443 (707)
Q Consensus 367 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll 443 (707)
+..+|.+-+..-....+++.|..+|.+.. .+....|.--+......++.++|++++++.++ .-|+-. .|..+.
T Consensus 617 --seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 617 --SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLG 692 (913)
T ss_pred --cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHh
Confidence 78889999999999999999999999875 45666787777777888999999999999998 677766 777888
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCChh
Q 043060 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM-KPD-AAIWTSLLGACRVHGRLE 521 (707)
Q Consensus 444 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~-~~~~~~ll~~~~~~g~~~ 521 (707)
..+.+.++++.|...|..=.+ ..+-.+..|-.|.+.=.+.|.+-.|..++++... .|+ ...|...+..-.+.|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 889999999999998886543 3444667888888988999999999999999743 354 889999999999999999
Q ss_pred HHHHHHHHHHccCCC------------------------------CchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 522 LGESVAKHLLELEPE------------------------------NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 522 ~A~~~~~~~~~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.|..+..++++--|. |+.+....+.++....+++.|++.|.+..+.+.
T Consensus 771 ~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 771 QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 999988887764332 667778888889999999999999999988765
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-11 Score=129.58 Aligned_cols=471 Identities=13% Similarity=0.070 Sum_probs=265.4
Q ss_pred CChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 043060 78 GDLSYALLVFETIRE---PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154 (707)
Q Consensus 78 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 154 (707)
|++++|.+++.++.+ .+...|.+|...|-+.|+.++++..+-..-... +-|..-|..+..-..+.|++.+|.-.+.
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 778888888777654 355667777777877787777777664443321 3355667777777777777888888887
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCe----ehHH----HHHHHHHhCCChhHHHHHHHhCcccc
Q 043060 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDA----VSYT----ALITGYASRGYLDDARQLFDEMPIRE 226 (707)
Q Consensus 155 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~----~~~~----~li~~~~~~g~~~~A~~l~~~m~~~~ 226 (707)
.+++.. +++....---...|-+.|+...|..-|.++.+.+. .-.- .++..|...++-+.|.+.++.... .
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s-~ 309 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS-K 309 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-h
Confidence 777765 44444555556677777777777766665543322 1112 234455556666777777776653 1
Q ss_pred CCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHc---------------------------CCCchhHH-HHHHHHHH
Q 043060 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH---------------------------GLGSNLHV-TNALIDMY 278 (707)
Q Consensus 227 ~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------------------g~~~~~~~-~~~li~~~ 278 (707)
.+-..+..+++.++..+.+....+.+.......... ++.++..+ ...+--..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 222334445555555566666666655554444431 12223333 22222222
Q ss_pred HhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHH
Q 043060 279 SKCGDLVKARDLFESIEK----RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354 (707)
Q Consensus 279 ~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 354 (707)
.+.+...+++.-|-.... .++..|.-+..+|...|++.+|+.+|..+......-+...|..+...+...|..+.|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 334444444444332221 2445677777888888888888888888876544445667777777788888888888
Q ss_pred HHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChH------------HHHHHHHHHHHcCCHHHHHH
Q 043060 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA------------SWNAMISGLAMHGKADKALS 422 (707)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~~g~~~~A~~ 422 (707)
+.+..++...+. +..+...|...|.+.|+.++|.++++.+..+|.. .---....+.+.|+.++=+.
T Consensus 470 e~y~kvl~~~p~--~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 470 EFYEKVLILAPD--NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHhcCCC--chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 888888887766 6666777888888888888888888887554411 11222344566677666555
Q ss_pred HHHHHHHCC-----CCC-----------------CHhHHHHHHHHHhccCCHHHHHHHHH-----HhHHhcCCCCCh--H
Q 043060 423 LFSRMIGEG-----LQP-----------------DDITFVGVLSACNHAGLLDIGRQYFN-----AMIQDYKISPKL--Q 473 (707)
Q Consensus 423 ~~~~m~~~g-----~~p-----------------~~~t~~~ll~a~~~~g~~~~a~~~~~-----~~~~~~~~~p~~--~ 473 (707)
+-..|+..+ +-| ...+...++.+-.+.++......... ......++..+. .
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 444444321 111 11111222222222222111111000 000111222221 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-C----CCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHcc-----CCCCchh
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM-E----MKPDA---AIWTSLLGACRVHGRLELGESVAKHLLEL-----EPENPGA 540 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~-~----~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~ 540 (707)
.+.-++..+.+.|++++|+.+...+ . ..++. ..-...+.++...+++..|...++.++.. +|--...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3445666777777777777776665 1 12221 12234455566677777777777777665 4544444
Q ss_pred HHHHHHHhhhcCC
Q 043060 541 YVLLSNMYAGAGR 553 (707)
Q Consensus 541 ~~~l~~~~~~~g~ 553 (707)
|+...+...+.|+
T Consensus 708 ~n~~~s~~~~~~q 720 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQ 720 (895)
T ss_pred HHHHHHHHHHHHH
Confidence 5544444444444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-12 Score=126.18 Aligned_cols=421 Identities=14% Similarity=0.117 Sum_probs=250.4
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHCCCCCC-cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHH
Q 043060 99 NNIIRGHSLSSSPVVAIKFYVRMILSGFVPN-TYTFPFILKSCAKISAISEGKQIHAHVLKLGLESD-PFVHTSLINMYA 176 (707)
Q Consensus 99 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~ 176 (707)
-...+-|.++|++++|++.|.+.++. .|| +.-|.....+|...|+++...+--...++. .|+ +..+..-.+++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 34456778899999999999999875 577 667778888888999999888877777655 344 345666677777
Q ss_pred hCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhH--------HHHHHHhCcc-ccCCCCCCHhhHHHHHHHHhccC
Q 043060 177 QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD--------ARQLFDEMPI-REENFVPNESTVVTVLSACAHMG 247 (707)
Q Consensus 177 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~--------A~~l~~~m~~-~~~~~~p~~~t~~~ll~~~~~~g 247 (707)
..|++++|+.=. |-..+..+|....-.-- |..-.++-.. +...+.|+.....+....+...-
T Consensus 195 ~lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 788888775311 11222222221111111 1111111111 22445566555555544432110
Q ss_pred CchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc-CCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043060 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC-GDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQML 326 (707)
Q Consensus 248 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 326 (707)
.. .+...+-..|...-..+=..|.+. ..+..|...+.+-... .... ...+..+.-+ +.|.
T Consensus 266 ~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~------~~~~--~~~n~~d~~l---e~~A 326 (606)
T KOG0547|consen 266 KP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLG------SESS--LSVNEIDAEL---EYMA 326 (606)
T ss_pred cc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhh------hhhh--ccccccchhH---HHHH
Confidence 00 000000001111111111111111 0122222222111000 0000 0000000000 0000
Q ss_pred hcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHH
Q 043060 327 QSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLAS 403 (707)
Q Consensus 327 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~ 403 (707)
.+.........-.|+.-.+.+-++.+++..... ...|--+..+|....+.++-...|+... ..|..+
T Consensus 327 --------~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~--~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dv 396 (606)
T KOG0547|consen 327 --------EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF--NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDV 396 (606)
T ss_pred --------HHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc--chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCch
Confidence 000000011223355556666666666665553 2335555666777777777777776553 335556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 482 (707)
|..-...+.-.+++++|..-|++.++ +.|+.. .|..+..+..+.+.++++...|++.++ .++.-++.|+.....+
T Consensus 397 YyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiL 472 (606)
T KOG0547|consen 397 YYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEIL 472 (606)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHH
Confidence 66666667777888999999999888 777665 788888888899999999999999987 5556678888899999
Q ss_pred HHcCCHHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcC
Q 043060 483 GRAGLFDEAEALLKTM-EMKPD---------AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552 (707)
Q Consensus 483 ~~~g~~~~A~~~~~~~-~~~p~---------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 552 (707)
..+++++.|.+.|+.. .++|+ +.+-.+++-.- -.+++..|..+++++++++|....+|..|+.+-.+.|
T Consensus 473 tDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 473 TDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG 551 (606)
T ss_pred hhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh
Confidence 9999999999999885 44443 22333333333 3489999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhh
Q 043060 553 RWDDVATIRTRLND 566 (707)
Q Consensus 553 ~~~~a~~~~~~m~~ 566 (707)
+.++|+++|++...
T Consensus 552 ~i~eAielFEksa~ 565 (606)
T KOG0547|consen 552 KIDEAIELFEKSAQ 565 (606)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.7e-15 Score=146.99 Aligned_cols=255 Identities=18% Similarity=0.193 Sum_probs=110.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHH-HHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCC
Q 043060 307 GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL-PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385 (707)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 385 (707)
..+.+.|++++|++++++......+|+...|..++ ..+...++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~--~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA--NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccc-ccccc
Confidence 33444445555555543332222123333332222 2233344555555555555544443 44556666666 67888
Q ss_pred HHHHHHHHhcCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 043060 386 IKAAEQVFDGMG--YKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462 (707)
Q Consensus 386 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 462 (707)
+++|.++++..- .++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|.+.++..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888887652 3466677788888889999999999999877633 3445567778888889999999999999998
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 043060 463 IQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM--EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540 (707)
Q Consensus 463 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 540 (707)
.+. .+.+......++..+...|+.+++.++++.. ....|+..|..+..++...|+.++|...++++.+..|+|+..
T Consensus 173 l~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 173 LEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 863 3335778888999999999999988888775 123456788999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 541 YVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 541 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
...+++++...|+.++|.+++++..+
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999887643
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-11 Score=116.95 Aligned_cols=401 Identities=14% Similarity=0.146 Sum_probs=244.3
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHhcCCC---CCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCH-hhHHHHHH
Q 043060 166 FVHTSLINMYAQNGELESARLVFNKSSL---RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNE-STVVTVLS 241 (707)
Q Consensus 166 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~-~t~~~ll~ 241 (707)
..|-.....=...+++..|+.+|++... ++...|--.+..=.++.....|..+++... .+-|.. ..|.-.+.
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAv----t~lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAV----TILPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHH----HhcchHHHHHHHHHH
Confidence 3344333444445666667777765543 355566666666677777777777777663 233322 22333333
Q ss_pred HHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHH
Q 043060 242 ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE--KRDVISWNVMIGGYTHTSDYKEAL 319 (707)
Q Consensus 242 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 319 (707)
.--..|++..|.++|....+. .|+...|++.|+.-.+-..++.|..+|++.. .|++.+|--...--.+.|+..-|.
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 444567777777777776654 6777777777777777777777777777643 566777766666666777777777
Q ss_pred HHHHHHhhcCCCCChh----hHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHH--
Q 043060 320 MLFRQMLQSNIEPNDV----TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF-- 393 (707)
Q Consensus 320 ~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~-- 393 (707)
.+|....+. -.|.. .|++...--.....++.|.-++...+..-+......+|..+...--+-|+........
T Consensus 228 ~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 228 SVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 777766553 11222 2222222223445567777777777766554323445555555444455543333322
Q ss_pred -hcC-----CC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-------HHHHHHHHH---hccCCHHH
Q 043060 394 -DGM-----GY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-------TFVGVLSAC---NHAGLLDI 454 (707)
Q Consensus 394 -~~~-----~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~ 454 (707)
+++ .. -|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=.+| ....+++.
T Consensus 306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 111 11 24556777777767777777777777777764 555221 121111122 24567777
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHH----HcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043060 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLG----RAGLFDEAEALLKTM-EMKPDAAIWTSLLGACRVHGRLELGESVAKH 529 (707)
Q Consensus 455 a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 529 (707)
+.++|+...+ -++....|+.-+--+|+ |+.++..|.+++-.. |.-|...++...|..-.+.++++....+|++
T Consensus 385 tr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 385 TRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7777777765 44445566655544443 667777777777664 6667777777777777777777777777777
Q ss_pred HHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCccCCcccE
Q 043060 530 LLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSS 577 (707)
Q Consensus 530 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 577 (707)
.++.+|.|..+|...+..-...|+++.|..+|+...++...-.|..-|
T Consensus 463 fle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 463 FLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 777777777777777777777777777777777777665544454444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8e-12 Score=131.61 Aligned_cols=327 Identities=16% Similarity=0.193 Sum_probs=188.7
Q ss_pred CCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043060 247 GSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESI---EKRDVISWNVMIGGYTHTSDYKEALMLFR 323 (707)
Q Consensus 247 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 323 (707)
|+++.|..++.++++.. +.+...|..|...|-..|+.+++...+-.. ...|...|-.+..-..+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55555555555544442 333444445555555555555444433221 22344444444444455555555555555
Q ss_pred HHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHH----hHHhhHHHhcCCHHHHHHHHhcCCC-
Q 043060 324 QMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW----TSLIDMYAKCGNIKAAEQVFDGMGY- 398 (707)
Q Consensus 324 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~li~~y~~~g~~~~A~~~~~~~~~- 398 (707)
+.++.. +++...+.--...|-+.|+...|...+.++....+.. +..-. ...+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~-d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV-DIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 544432 1222222222333444455555554444444443321 21111 1123334444444555555554432
Q ss_pred -C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------------------------CCCCHhHHHHHHHHHh
Q 043060 399 -K---TLASWNAMISGLAMHGKADKALSLFSRMIGEG---------------------------LQPDDITFVGVLSACN 447 (707)
Q Consensus 399 -~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~p~~~t~~~ll~a~~ 447 (707)
. +...++.++..|.+...++.|......+.... +.++... ..+.-+..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhh
Confidence 1 22345555555556666666655555554411 2222222 12222333
Q ss_pred ccCCHHHHHHHHHHhHHhcCCC--CChHHHHHHHHHHHHcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChhH
Q 043060 448 HAGLLDIGRQYFNAMIQDYKIS--PKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK---PDAAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p~~~~~~~ll~~~~~~g~~~~ 522 (707)
+....+....+...... +... -+...|.-+.++|.+.|++.+|+++|..+-.. .+..+|--+...|...|.++.
T Consensus 389 ~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred cccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 44433333333333333 2533 35678889999999999999999999998222 247799999999999999999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCccCCcccEE
Q 043060 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSI 578 (707)
Q Consensus 523 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 578 (707)
|.+.|++++.+.|++..+-..|+.+|.+.|+.++|.+.++.+...+.++.+++.|-
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 99999999999999999999999999999999999999999886665556677764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.9e-10 Score=109.06 Aligned_cols=481 Identities=12% Similarity=0.124 Sum_probs=337.9
Q ss_pred CCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHH
Q 043060 76 PFGDLSYALLVFETIRE---PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQI 152 (707)
Q Consensus 76 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 152 (707)
..+++..|+.+|++... ++...|-.-+..=.++.....|..+|++....=.+.|.. |--.+..=-..|++..|+++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHH
Confidence 35677889999988764 677788888888899999999999999988642222332 22333333457899999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCC--CCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCC
Q 043060 153 HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS--LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFV 230 (707)
Q Consensus 153 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 230 (707)
|+.-.+. .|+...|++.|++=.+...++.|+.++++.. .|++.+|--....=.++|....|..+|......-..-.
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 9987754 7999999999999999999999999999754 67889999888888899999999999988742111111
Q ss_pred CCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCch--hHHHHHHHHHHHhcCCHHHHHHH--------HHhcCCC---
Q 043060 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN--LHVTNALIDMYSKCGDLVKARDL--------FESIEKR--- 297 (707)
Q Consensus 231 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~--- 297 (707)
.+...|++...--.+...++.|.-++...++.- +.+ ...|..+...--+-|+....... |+.+...
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 122234444444445667888888998888763 322 45666666666666765444333 2333333
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh--h---HHhH-HH----HHhccCCchHHHHHHHHHHHhCCCC
Q 043060 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV--T---FLSV-LP----ACAYLGALDLGKWIHAYIDKNHQKL 367 (707)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t---~~~l-l~----~~~~~~~~~~a~~~~~~~~~~~~~~ 367 (707)
|-.+|--.+..--..|+.+...++|++.... ++|-.. . |..+ |+ .-....+.+.++++++..++.-+.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH- 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH- 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc-
Confidence 4557777777778889999999999999865 555321 1 1111 11 123567889999999988884332
Q ss_pred CcHHHHhHH----hhHHHhcCCHHHHHHHHhcCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHH
Q 043060 368 NNVSLWTSL----IDMYAKCGNIKAAEQVFDGMG--YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFV 440 (707)
Q Consensus 368 ~~~~~~~~l----i~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~ 440 (707)
...++.-+ ...-.++.++..|.+++.... -|-..++...|..=.+.++++....+|++.++ ..|.. .++.
T Consensus 399 -kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~ 475 (677)
T KOG1915|consen 399 -KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWS 475 (677)
T ss_pred -ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHH
Confidence 44444444 334457889999999998764 35566777788888889999999999999998 55644 5777
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH----
Q 043060 441 GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAAIWTSLLGACR---- 515 (707)
Q Consensus 441 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~---- 515 (707)
.....-...|+.+.|..+|+-++....+......|.+.|+.=...|.++.|..+++++ ...+...+|-++..--.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccc
Confidence 7777777889999999999998875333344567788888888999999999999986 44456668888776544
Q ss_pred -hcC-----------ChhHHHHHHHHHHcc----CCCCc--hhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 516 -VHG-----------RLELGESVAKHLLEL----EPENP--GAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 516 -~~g-----------~~~~A~~~~~~~~~~----~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
+.+ ++..|..+|+++... +|... .......++-...|...+...+-.+|.
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 334 567788888888753 33221 222334444555676666666666553
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-11 Score=128.49 Aligned_cols=275 Identities=10% Similarity=0.072 Sum_probs=195.8
Q ss_pred cCCHHHHHHHHHhcCCC--Chh-hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHH--hHHHHHhccCCchHHHH
Q 043060 281 CGDLVKARDLFESIEKR--DVI-SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL--SVLPACAYLGALDLGKW 355 (707)
Q Consensus 281 ~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 355 (707)
.|+++.|++......+. ++. .+-.......+.|++++|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57788887777765543 222 2322334447788888888888888763 45543332 22445677788888888
Q ss_pred HHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCC---hH--------HHHHHHHHHHHcCCHHHHHHHH
Q 043060 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT---LA--------SWNAMISGLAMHGKADKALSLF 424 (707)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~--------~~~~li~~~~~~g~~~~A~~~~ 424 (707)
.++.+.+..+. ++.+...+...|.+.|++++|.+++..+.+.. .. .|..++.......+.+...+++
T Consensus 175 ~l~~~~~~~P~--~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEVAPR--HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHhcCCC--CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88888887766 77788888889999999999998888775431 11 3333444444455566666677
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 043060 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD 503 (707)
Q Consensus 425 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 503 (707)
+.+.+. .+.+......+..++...|+.++|...+++..+ .+|+.... ++......++.+++.+..++. ...|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 666442 344566778888889999999999999988765 24444322 222333558999999988886 55566
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 504 -AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 504 -~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
+..+..+...|...|++++|.+.|+++++..|++ ..+..|+.++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6678889999999999999999999999999865 6678999999999999999999887654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-12 Score=131.97 Aligned_cols=272 Identities=14% Similarity=0.144 Sum_probs=142.3
Q ss_pred CHHHHHHHHHhcCCC--Chh-hHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CCChhhHHhHHHHHhccCCchHHHHHH
Q 043060 283 DLVKARDLFESIEKR--DVI-SWNVMIGGYTHTSDYKEALMLFRQMLQSNI--EPNDVTFLSVLPACAYLGALDLGKWIH 357 (707)
Q Consensus 283 ~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~ 357 (707)
+..+|...|..+++. |+. ....+..+|...+++++|.++|+...+... .-+...|.+++.-+-+ +.+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 455666666664432 222 233455666667777777777766665320 1133455555433321 1111111
Q ss_pred -HHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 043060 358 -AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL---ASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433 (707)
Q Consensus 358 -~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 433 (707)
+.++..... .+.+|.++.++|.-+++.+.|++.|++..+-|+ .+|+.+..-+.....+|.|...|+..+. +.
T Consensus 410 aq~Li~~~~~--sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 410 AQDLIDTDPN--SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHhhCCC--CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 222222322 455566666666666666666666665543332 3455555555555566666666665554 44
Q ss_pred CCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 043060 434 PDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTS 509 (707)
Q Consensus 434 p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 509 (707)
|... .|-.+...|.++++++.|.-.|+.+. .+.| +.....++...+.+.|+.++|+.+++++ ..+| |+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 4444 55555556666666666666666554 3333 3444555555566666666666666654 2232 2333333
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 510 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
.+..+...+++++|...++++.++-|++..+|..++.+|-+.|+.+.|..-|.-+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 34444555566666666666666666666666666666666666666655444443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.8e-11 Score=115.42 Aligned_cols=193 Identities=13% Similarity=0.152 Sum_probs=145.1
Q ss_pred HHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 043060 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSA 445 (707)
Q Consensus 370 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 445 (707)
+.+...+.+-|+-.++.++|...|++..+ +....|+.|..-|...++...|++-|++.++ +.| |...|-.|.++
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHH
Confidence 34566677777777788888888877643 3445788888888888888888888888887 555 44588888888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHH
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM--EMKPDAAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A 523 (707)
|.-.+...-|+-+|++..+ --+-|...|.+|.++|.+.+++++|++-|.+. .-..+...+..|...+-+.++.++|
T Consensus 408 Yeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 8888888888888888764 33337788888888888888888888888876 2223467888888888888888888
Q ss_pred HHHHHHHHc-------cCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 524 ESVAKHLLE-------LEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 524 ~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
...+++.++ .+|+...+..-|+.-+.+.+++++|..+-.....
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 888888876 3344445556678888888888888876655443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-10 Score=115.67 Aligned_cols=257 Identities=14% Similarity=0.110 Sum_probs=210.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHH
Q 043060 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381 (707)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 381 (707)
...-..-+...+++.+..+++....+.. ++....+..-|..+...|+...-..+-..+++..+. .+..|-++.--|.
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~--~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS--KALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC--CCcchhhHHHHHH
Confidence 3344456677899999999999988753 445555555666777888877777777778887776 6778999999999
Q ss_pred hcCCHHHHHHHHhcCCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHH
Q 043060 382 KCGNIKAAEQVFDGMGYKTL---ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQ 457 (707)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 457 (707)
..|+.++|++.|.+...-|. ..|-.+...|+-.|..++|+..|...-+ +-|. ..-+.-+.--|.+.++.+.|.+
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhccHHHHHH
Confidence 99999999999998765443 4899999999999999999999998877 3332 2244455667889999999999
Q ss_pred HHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC--C------CCC-CHHHHHHHHHHHHhcCChhHHHHHH
Q 043060 458 YFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM--E------MKP-DAAIWTSLLGACRVHGRLELGESVA 527 (707)
Q Consensus 458 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~------~~p-~~~~~~~ll~~~~~~g~~~~A~~~~ 527 (707)
+|.... ++.| |+...+-+.-+....+.+.+|...|+.. . .++ -..+|+.|+.+|++.+.+++|+..+
T Consensus 402 Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 402 FFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 999886 5666 6778888888888899999999999875 1 112 2457899999999999999999999
Q ss_pred HHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 528 KHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 528 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
++++.+.|.++.+|..++-+|...|+++.|++.|.+..-
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-11 Score=126.70 Aligned_cols=285 Identities=13% Similarity=0.101 Sum_probs=192.9
Q ss_pred CCChhHHHHHHHhCccccCCCCCCH-hhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHH--HHHHHHHHHhcCCHH
Q 043060 209 RGYLDDARQLFDEMPIREENFVPNE-STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHV--TNALIDMYSKCGDLV 285 (707)
Q Consensus 209 ~g~~~~A~~l~~~m~~~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~ 285 (707)
.|++++|.+.+..... ..++. ..|.....+..+.|+.+.+...+..+.+. .|+... .......+...|+++
T Consensus 97 eGd~~~A~k~l~~~~~----~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 97 EGDYQQVEKLMTRNAD----HAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred CCCHHHHHHHHHHHHh----cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHH
Confidence 4677777766665421 11111 22323333445667777777777777654 344322 223466788888888
Q ss_pred HHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHH
Q 043060 286 KARDLFESIEKR---DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362 (707)
Q Consensus 286 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 362 (707)
.|...++++.+. ++.....+...|.+.|++++|.+++..+.+.+..++. .+..+
T Consensus 171 ~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l---------------------- 227 (398)
T PRK10747 171 AARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAML---------------------- 227 (398)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHH----------------------
Confidence 888888887643 5667778888888889999999888888876644221 11100
Q ss_pred hCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 043060 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF 439 (707)
Q Consensus 363 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 439 (707)
...+|..++.......+.+...++++..+. .++.....+..++...|+.++|.+++++..+ ..||...
T Consensus 228 ------~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l- 298 (398)
T PRK10747 228 ------EQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERL- 298 (398)
T ss_pred ------HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHH-
Confidence 011222333333333455566666666642 4677788888888899999999999988887 3455422
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC
Q 043060 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAAIWTSLLGACRVHG 518 (707)
Q Consensus 440 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g 518 (707)
.++.+....++.+++.+..+...+ ..+-|...+.++..++.+.|++++|.+.|+.. ...|+...+..|...+.+.|
T Consensus 299 -~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g 375 (398)
T PRK10747 299 -VLLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLH 375 (398)
T ss_pred -HHHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Confidence 123344456888999999888876 34446667888899999999999999999886 67799888888999999999
Q ss_pred ChhHHHHHHHHHHccC
Q 043060 519 RLELGESVAKHLLELE 534 (707)
Q Consensus 519 ~~~~A~~~~~~~~~~~ 534 (707)
+.++|.+.+++.+.+-
T Consensus 376 ~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 376 KPEEAAAMRRDGLMLT 391 (398)
T ss_pred CHHHHHHHHHHHHhhh
Confidence 9999999999887753
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-12 Score=130.66 Aligned_cols=244 Identities=15% Similarity=0.181 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCC-CCcHHHHhHHhhHHHhcCCHHHHHHHH
Q 043060 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK-LNNVSLWTSLIDMYAKCGNIKAAEQVF 393 (707)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~ 393 (707)
..+|+..|.+... .+.-+......+..+|...+++++++.+|+.+.+..+- ..+..+|++.+--+-+.=.+.---+-+
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455555555222 12223333444445555555555555555555543221 113444444433222111111111111
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh
Q 043060 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472 (707)
Q Consensus 394 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 472 (707)
-.+....+.+|-++..+|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+..+. .|+
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~~ 486 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VDP 486 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CCc
Confidence 112223444555555555555555555555555555 444 333555444445555555555555554432 333
Q ss_pred HHHHH---HHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 473 QHYGC---MVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 473 ~~~~~---li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
.+|++ |.-.|.++++++.|+-.|+++ .+.|. .+....++..+.+.|+.|+|++++++++.++|.|+..-+..+.+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 33333 233455555555555555554 44443 33444444455555555555555555555555555555555555
Q ss_pred hhhcCChhhHHHHHHHHhh
Q 043060 548 YAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~ 566 (707)
+...+++++|...++++++
T Consensus 567 l~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHhhcchHHHHHHHHHHHH
Confidence 5555555555555555544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-10 Score=122.63 Aligned_cols=290 Identities=13% Similarity=0.065 Sum_probs=174.0
Q ss_pred hCCChhHHHHHHHhCccccCCCCCCHh-hHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHH
Q 043060 208 SRGYLDDARQLFDEMPIREENFVPNES-TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286 (707)
Q Consensus 208 ~~g~~~~A~~l~~~m~~~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 286 (707)
..|+++.|.+.+.+.. ...|+.. .+.....+....|+.+.+.+.+....+..-.++..+.......+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~----~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNA----DHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHh----hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 4677888887777663 3344433 3334445566778888888888777665322222344445777788888888
Q ss_pred HHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHh
Q 043060 287 ARDLFESIEKR---DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKN 363 (707)
Q Consensus 287 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 363 (707)
|...++.+.+. +...+..+...|.+.|++++|.+++..+.+.++.+. ..+..+-
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~---------------------- 228 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLE---------------------- 228 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHH----------------------
Confidence 88888887642 556677788888888888888888888887754322 2111100
Q ss_pred CCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHH-
Q 043060 364 HQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITF- 439 (707)
Q Consensus 364 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~- 439 (707)
...+..++..-......+...+.++..+. .+...+..++..+...|+.++|.+++++..+ ..||....
T Consensus 229 ------~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~ 300 (409)
T TIGR00540 229 ------QKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAIS 300 (409)
T ss_pred ------HHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccch
Confidence 01111111111122233444555555543 3777888888889999999999999999888 45555421
Q ss_pred --HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHh---CCCCCCHHHHHHHHHHH
Q 043060 440 --VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT---MEMKPDAAIWTSLLGAC 514 (707)
Q Consensus 440 --~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~p~~~~~~~ll~~~ 514 (707)
..........++.+.+.+.++...+.....|+.....++...+.+.|++++|.+.|+. ....||...+..+...+
T Consensus 301 ~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll 380 (409)
T TIGR00540 301 LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAF 380 (409)
T ss_pred hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHH
Confidence 1111122334566666666666655322222214445666666666666666666662 24456666566666666
Q ss_pred HhcCChhHHHHHHHHHHc
Q 043060 515 RVHGRLELGESVAKHLLE 532 (707)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~ 532 (707)
.+.|+.++|.+++++.+.
T Consensus 381 ~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 381 DQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-10 Score=111.72 Aligned_cols=257 Identities=14% Similarity=0.161 Sum_probs=202.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCC-CCcHHHHhHHhhHHHhc
Q 043060 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK-LNNVSLWTSLIDMYAKC 383 (707)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~y~~~ 383 (707)
+..+|....+.+++++-.......|+.-....-+....+.-...++++|+.+|+.+.+..+- ..|..+|+.++-.-..+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 34566666688888888888888887655555555555566778999999999999997543 23667777766443332
Q ss_pred CCHH-HHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHH
Q 043060 384 GNIK-AAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNA 461 (707)
Q Consensus 384 g~~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 461 (707)
..+. -|..+++ +.+--+.|.-.+.+-|.-.++.++|+..|++.++ +.|... .++.+..-|....+...|.+-++.
T Consensus 313 skLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SKLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 2222 2333332 2222344555666777888999999999999999 777765 667777789999999999999999
Q ss_pred hHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 043060 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539 (707)
Q Consensus 462 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 539 (707)
+++ -.+.|-..|-.|..+|.-.+.+.-|+-.|++. ..+|+ ...|.+|+..|.+.++.++|++.|.+++..+..+..
T Consensus 390 Avd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 390 AVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 985 33347889999999999999999999999997 67775 999999999999999999999999999998877889
Q ss_pred hHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 540 AYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 540 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
++..|+++|.+.++.++|...+++-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999988765
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-11 Score=117.31 Aligned_cols=427 Identities=12% Similarity=0.081 Sum_probs=275.5
Q ss_pred cHHHHHH---HHhccCChHHHHHHHHHHHHhCCCCChhHH-HHHHHHHHhCCChhHHHHHHh----cCCCCC----eehH
Q 043060 132 TFPFILK---SCAKISAISEGKQIHAHVLKLGLESDPFVH-TSLINMYAQNGELESARLVFN----KSSLRD----AVSY 199 (707)
Q Consensus 132 t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~f~----~~~~~~----~~~~ 199 (707)
||+.|.+ -|.......+|+..++-+++...-|+.... ..+.+.|.+...+.+|.+.++ +++.-+ +...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 4544443 344455667777777777777665554322 234455667777888877765 333221 2234
Q ss_pred HHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCC------------Cch
Q 043060 200 TALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL------------GSN 267 (707)
Q Consensus 200 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~------------~~~ 267 (707)
+.+.-.|.+.|.++.|+.-|+... ...||-.+-..|+-.+...|+-+..++.|..++..-. .|+
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m----~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCM----EEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHH----HhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 445556778888888888888763 3457766655555555667888888888887775422 223
Q ss_pred hHHHHHHH-----HHHHhcC--CHHHHH----HHHHhcCCCChh---hHH------------------HHHHHHHhcCCH
Q 043060 268 LHVTNALI-----DMYSKCG--DLVKAR----DLFESIEKRDVI---SWN------------------VMIGGYTHTSDY 315 (707)
Q Consensus 268 ~~~~~~li-----~~~~~~g--~~~~A~----~~~~~~~~~~~~---~~~------------------~li~~~~~~g~~ 315 (707)
....+.-+ .-.-+.. +.++++ ++..-+..+|-. -|. .-...|.++|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 33332222 1111111 122222 222222223211 011 112457899999
Q ss_pred HHHHHHHHHHhhcCCCCChhhHH--hHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHH
Q 043060 316 KEALMLFRQMLQSNIEPNDVTFL--SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393 (707)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 393 (707)
+.|+++++-.....-+.-+..-+ .++.......++..|.+.-...+...-. +....+.-.+.-...|++++|.+.+
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry--n~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY--NAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc--CHHHhhcCCceeeecCcHHHHHHHH
Confidence 99999998876654322222212 2232233344667777776666554433 4444444445556689999999999
Q ss_pred hcCCCCChHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 043060 394 DGMGYKTLASWNAM---ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470 (707)
Q Consensus 394 ~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 470 (707)
++....|...-.+| .-.+-..|+.++|++.|-++..- +..+...+..+.+.|....+...|.+++..... -++.
T Consensus 514 keal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~ 590 (840)
T KOG2003|consen 514 KEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPN 590 (840)
T ss_pred HHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCC
Confidence 99987776544433 34577889999999999988762 334555788888999999999999999987754 5666
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKT-MEMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
|+...+-|.++|-+.|+-..|.+..-. ...-| +..+..-|..-|....-+++|+..|+++--+.|+-..-...++.++
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 889999999999999999999886544 34334 4666666777777788889999999999999996544444556667
Q ss_pred hhcCChhhHHHHHHHHhhC
Q 043060 549 AGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~ 567 (707)
.+.|++..|..+++..-.+
T Consensus 671 rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HhcccHHHHHHHHHHHHHh
Confidence 7899999999999988654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-10 Score=121.48 Aligned_cols=280 Identities=12% Similarity=0.047 Sum_probs=193.4
Q ss_pred HhcCCHHHHHHHHHhcCCC--C-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh--hHHhHHHHHhccCCchHH
Q 043060 279 SKCGDLVKARDLFESIEKR--D-VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV--TFLSVLPACAYLGALDLG 353 (707)
Q Consensus 279 ~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a 353 (707)
...|+++.|++.+.+..+. + ...+-.....+.+.|++++|.+.|.+..+.. |+.. .-..........|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 4567788888777766542 2 2333444566677788888888888876542 4432 222235566677888888
Q ss_pred HHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC---ChHHHH----HHHHHHHHcCCHHHHHHHHHH
Q 043060 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK---TLASWN----AMISGLAMHGKADKALSLFSR 426 (707)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~ 426 (707)
...++.+.+..+. ++.+...+..+|...|++++|.+.+....+. +...+. ....++...+..+++.+.+.+
T Consensus 173 l~~l~~l~~~~P~--~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR--HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888888888766 6778888889999999999888888877533 222221 111222333444444556666
Q ss_pred HHHCCC---CCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHH-HHHHHHH--HHHcCCHHHHHHHHHhC-C
Q 043060 427 MIGEGL---QPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH-YGCMVDL--LGRAGLFDEAEALLKTM-E 499 (707)
Q Consensus 427 m~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~--~~~~g~~~~A~~~~~~~-~ 499 (707)
+.+... +.+...+..+...+...|+.++|.+.+++..+. .|+... .-.++.. ....++.+++.+.+++. .
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 655321 126678888889999999999999999999874 233321 0012222 23357788888888775 4
Q ss_pred CCCC-H--HHHHHHHHHHHhcCChhHHHHHHH--HHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 500 MKPD-A--AIWTSLLGACRVHGRLELGESVAK--HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 500 ~~p~-~--~~~~~ll~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
..|+ + ....++...+.+.|++++|.+.++ ..++..|++ ..+..++.++.+.|+.++|.+++++...
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555 4 677899999999999999999999 577778855 5577999999999999999999987643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.6e-09 Score=108.23 Aligned_cols=410 Identities=15% Similarity=0.054 Sum_probs=266.2
Q ss_pred hCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCC---CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCC-Hh
Q 043060 159 LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR---DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN-ES 234 (707)
Q Consensus 159 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~-~~ 234 (707)
..+.-|..+|..|.-+..++|+++.+-+.|++...- ....|+.+...|...|.-..|+.++++-.. ..-.|+ ..
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~--~~~~ps~~s 394 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLK--KSEQPSDIS 394 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc--cccCCCcch
Confidence 345678889999999999999999999999977643 456799999999999999999999998742 221243 33
Q ss_pred hHHHHHHHHh-ccCCchHHHHHHHHHHHc--CC--CchhHHHHHHHHHHHhcC-----------CHHHHHHHHHhcCCC-
Q 043060 235 TVVTVLSACA-HMGSLELGNWVCSLIEGH--GL--GSNLHVTNALIDMYSKCG-----------DLVKARDLFESIEKR- 297 (707)
Q Consensus 235 t~~~ll~~~~-~~g~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~~~- 297 (707)
.+-..-+.|. +.+.++++..+-..+++. +. ......+..+.-+|...- ...++...+++..+.
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444454 457777777776666652 11 122344444444444321 234566666666432
Q ss_pred --ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhH
Q 043060 298 --DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375 (707)
Q Consensus 298 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 375 (707)
|+.+---+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++..|..+.+.....-.. |-.....
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~ 552 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDG 552 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchh
Confidence 333333344456778888999999988888766667777777777777888888888888776654332 1111112
Q ss_pred HhhHHHhcCCHHHHHHHHhcCC-------------------------------CCCh-HHHHHHHHHHHHcCCHHHHHHH
Q 043060 376 LIDMYAKCGNIKAAEQVFDGMG-------------------------------YKTL-ASWNAMISGLAMHGKADKALSL 423 (707)
Q Consensus 376 li~~y~~~g~~~~A~~~~~~~~-------------------------------~~~~-~~~~~li~~~~~~g~~~~A~~~ 423 (707)
-+..-...++.++|......+. ..+. .++..+..-... +.+.+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccc
Confidence 2222223445554443322210 0011 112111111110 00000000
Q ss_pred HHHHHHCCCCCCHh--------HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 043060 424 FSRMIGEGLQPDDI--------TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL 495 (707)
Q Consensus 424 ~~~m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 495 (707)
.. |...-+.|+.. .+......+.+.+..++|...+.+..+ ..+-....|......+...|.+++|.+.|
T Consensus 631 ~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 631 LK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 00 11111223222 233455667888899999887777754 23335667777778899999999999988
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCChhHHHH--HHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCcc
Q 043060 496 KTM-EMKPD-AAIWTSLLGACRVHGRLELGES--VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571 (707)
Q Consensus 496 ~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 571 (707)
... .+.|+ +.+..++...+.+.|+...|.. ++..+++++|.++.+|..|+.++.+.|+.++|.+.|....+..- .
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S 786 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-S 786 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-C
Confidence 875 77887 7789999999999999998888 99999999999999999999999999999999999998876543 3
Q ss_pred CCcccEE
Q 043060 572 VPGCSSI 578 (707)
Q Consensus 572 ~~~~s~~ 578 (707)
.|..+|.
T Consensus 787 ~PV~pFs 793 (799)
T KOG4162|consen 787 NPVLPFS 793 (799)
T ss_pred CCccccc
Confidence 4555554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-12 Score=129.64 Aligned_cols=250 Identities=18% Similarity=0.259 Sum_probs=91.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhc-C----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccC
Q 043060 274 LIDMYSKCGDLVKARDLFESI-E----KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348 (707)
Q Consensus 274 li~~~~~~g~~~~A~~~~~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 348 (707)
+..++.+.|++++|++++++. . ..|...|..+.......+++++|.+.++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 344455555555555555321 1 113334444444445555555555555555543321 22233333333 4555
Q ss_pred CchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC-----CCChHHHHHHHHHHHHcCCHHHHHHH
Q 043060 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG-----YKTLASWNAMISGLAMHGKADKALSL 423 (707)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 423 (707)
+++.|..+.....+... ++..+..++..|.+.|+++++.++++.+. ..+...|..+...+.+.|+.++|++.
T Consensus 92 ~~~~A~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDG---DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc---ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555444333221 34445566666777777777777776632 23556777777777888888888888
Q ss_pred HHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 043060 424 FSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMK 501 (707)
Q Consensus 424 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 501 (707)
|++..+ ..|+. .....++..+...|+.+++.++++...+. .+.+...+..+..+|...|+.++|+..+++. ...
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 888887 56753 46667777778888888877777777653 2445566777888888888888888888876 334
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 502 P-DAAIWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 502 p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
| |+.+...+..++...|+.++|.++.+++++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 5 477777788888888888888888777664
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-09 Score=113.14 Aligned_cols=486 Identities=12% Similarity=0.081 Sum_probs=246.4
Q ss_pred HHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCCC----CcchHHHHHHHHHcCCCchHHHHHHHHHHHC
Q 043060 49 VHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREP----NQVIWNNIIRGHSLSSSPVVAIKFYVRMILS 124 (707)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 124 (707)
++..+...|+.|+-++|.+++ .-|+..|+.+.|- +|.-|.-+ +...++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLi--arYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLI--ARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHH--HHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 344566789999999999999 9999999999888 88777642 3446777787777777766554
Q ss_pred CCCCCcccHHHHHHHHhccCChHH---HHHHHHHHH----HhCCC-CChh-------------HHHHHHHHHHhCCChhH
Q 043060 125 GFVPNTYTFPFILKSCAKISAISE---GKQIHAHVL----KLGLE-SDPF-------------VHTSLINMYAQNGELES 183 (707)
Q Consensus 125 g~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~----~~g~~-~~~~-------------~~~~li~~~~~~g~~~~ 183 (707)
.|-+.||..|+.+|+..||+.. .++.+..+. ..|+. +... -....+....-.|-++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 5677788888888888887654 222222221 11211 0000 01122233333455555
Q ss_pred HHHHHhcCCC----------------------------------CCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCC
Q 043060 184 ARLVFNKSSL----------------------------------RDAVSYTALITGYASRGYLDDARQLFDEMPIREENF 229 (707)
Q Consensus 184 A~~~f~~~~~----------------------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 229 (707)
+.+++..+|. ++..++.+.+..-..+|+.+.|..++.+| ++.|+
T Consensus 158 llkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em--ke~gf 235 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM--KEKGF 235 (1088)
T ss_pred HHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH--HHcCC
Confidence 5555555542 23334444444444445555555555555 23444
Q ss_pred CCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHH
Q 043060 230 VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309 (707)
Q Consensus 230 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 309 (707)
+.+..-|..++-+ .++...+..++.-|...|+.|+..|+.-.+.-..++|....+....+.-.--....+..+..+.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~ 312 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGL 312 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhccc
Confidence 4444444444433 3444444444444444455555444444444333333321111110000000001111111111
Q ss_pred HhcCC-----HHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCC--CcHHHHhHHhhHHHh
Q 043060 310 THTSD-----YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL--NNVSLWTSLIDMYAK 382 (707)
Q Consensus 310 ~~~g~-----~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~y~~ 382 (707)
..+.+ ..-....+.+..-.|+.-....|.. ..-....|.-+..+++-..+..-.... .++..+..
T Consensus 313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~------- 384 (1088)
T KOG4318|consen 313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGA------- 384 (1088)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHH-------
Confidence 00111 0111111111111222222211111 111122344444444444332211110 01222222
Q ss_pred cCCHHHHHHHHhcCCCCChH-HHHHHHHHHHH---cCCHHHHHHHHHHHHH------------C----CCCC-------C
Q 043060 383 CGNIKAAEQVFDGMGYKTLA-SWNAMISGLAM---HGKADKALSLFSRMIG------------E----GLQP-------D 435 (707)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m~~------------~----g~~p-------~ 435 (707)
.+.+.|.+...+... .++ ...+... ..+..+..++....+. . -..| =
T Consensus 385 -----~lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~i 458 (1088)
T KOG4318|consen 385 -----LLRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLI 458 (1088)
T ss_pred -----HHHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHH
Confidence 233444444333222 121 1111111 1112222222221100 0 0111 1
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCCHHHHHHH
Q 043060 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME-----MKPDAAIWTSL 510 (707)
Q Consensus 436 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l 510 (707)
...-+.++..|++.-+..+++..-+.... +-+ + ..|..||+.+....+.++|..+.++.. +.-|..-+..+
T Consensus 459 rdi~~ql~l~l~se~n~lK~l~~~ekye~-~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l 534 (1088)
T KOG4318|consen 459 RDIANQLHLTLNSEYNKLKILCDEEKYED-LLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSL 534 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHH
Confidence 11234556666666666666655444322 122 2 678999999999999999999999873 23456677888
Q ss_pred HHHHHhcCChhHHHHHHHHHHcc---CCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCcc
Q 043060 511 LGACRVHGRLELGESVAKHLLEL---EPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 571 (707)
Q Consensus 511 l~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 571 (707)
.+...+++....+..+++++.+. .|....+...+.+.-...|+.+...++++-+...|+..
T Consensus 535 ~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 535 QDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 89999999999999999888763 24345667788888999999999999999999988864
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.3e-10 Score=103.54 Aligned_cols=285 Identities=14% Similarity=0.140 Sum_probs=173.8
Q ss_pred CCChhHHHHHHHhCccccCCCCC-CHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCc---hhHHHHHHHHHHHhcCCH
Q 043060 209 RGYLDDARQLFDEMPIREENFVP-NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS---NLHVTNALIDMYSKCGDL 284 (707)
Q Consensus 209 ~g~~~~A~~l~~~m~~~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~ 284 (707)
.+++++|.++|-+|.+ ..| +..+-.++-+.|.+.|..+.|..+|+.+.++.--+ -......|..=|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~----~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ----EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHh----cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 4678888888888853 222 22334567777888899999999998888753111 234556677889999999
Q ss_pred HHHHHHHHhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHH
Q 043060 285 VKARDLFESIEKRD---VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361 (707)
Q Consensus 285 ~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 361 (707)
|.|+.+|..+.+.+ ..+...|+..|-+..+|++|++.-+++...+-++..+-
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e------------------------- 178 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE------------------------- 178 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH-------------------------
Confidence 99999999988743 34566788999999999999999888887665443322
Q ss_pred HhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhH
Q 043060 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT---LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT 438 (707)
Q Consensus 362 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 438 (707)
-...|.-|...+....+++.|...+.+..+.| +..--.+...+...|+++.|++.++...+.+..--..+
T Consensus 179 -------IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 179 -------IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred -------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 11223444444444555555555555543222 22233344556666777777777777666432222235
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhc
Q 043060 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA-LLKTMEMKPDAAIWTSLLGACRVH 517 (707)
Q Consensus 439 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~p~~~~~~~ll~~~~~~ 517 (707)
...|..+|.+.|+.+++..++..+.+. .+....-..+.+.-....-.++|.. +.+.+.-+|+...+..|+..-...
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc
Confidence 566666777777777777777666543 2333333344444333334444444 334456677777777777655432
Q ss_pred ---CChhHHHHHHHHHHc
Q 043060 518 ---GRLELGESVAKHLLE 532 (707)
Q Consensus 518 ---g~~~~A~~~~~~~~~ 532 (707)
|...+....+..++.
T Consensus 329 aeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 329 AEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccccchhhhHHHHHHHHH
Confidence 334444445555543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-07 Score=96.72 Aligned_cols=301 Identities=13% Similarity=0.161 Sum_probs=178.4
Q ss_pred CCchHHHHHHHHHHHcCCCc------hhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhhHHHHHHHHHhcC
Q 043060 247 GSLELGNWVCSLIEGHGLGS------NLHVTNALIDMYSKCGDLVKARDLFESIEKRD-------VISWNVMIGGYTHTS 313 (707)
Q Consensus 247 g~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g 313 (707)
|+..+-...+.++++. +.| -...|..+.+.|-..|+++.|+.+|++..+-+ ...|......=.+..
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 3444455556666553 222 23468889999999999999999999987642 235666666667788
Q ss_pred CHHHHHHHHHHHhhcCCC----------C-Chh------hHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHH
Q 043060 314 DYKEALMLFRQMLQSNIE----------P-NDV------TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376 (707)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~----------p-~~~------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 376 (707)
+++.|+++++.....--. | ... .|...++.--..|-++..+.+++.++...+. ++.+.-..
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria--TPqii~Ny 517 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA--TPQIIINY 517 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC--CHHHHHHH
Confidence 899999988877542111 1 111 1222333334567788888888888888776 44444445
Q ss_pred hhHHHhcCCHHHHHHHHhcCC----CCChH-HHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH--
Q 043060 377 IDMYAKCGNIKAAEQVFDGMG----YKTLA-SWNAMISGLAM---HGKADKALSLFSRMIGEGLQPDDITFVGVLSAC-- 446 (707)
Q Consensus 377 i~~y~~~g~~~~A~~~~~~~~----~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-- 446 (707)
...+-...-++++.+++++-. -|++. .|+..+.-+.+ ....+.|..+|++.++ |++|...-+..|+.+-
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 555566677888888888753 34443 78877666554 2358889999999988 6777766444444332
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH---HHHHHHHHHhcCCh
Q 043060 447 NHAGLLDIGRQYFNAMIQDYKISPKL--QHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAAI---WTSLLGACRVHGRL 520 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~---~~~ll~~~~~~g~~ 520 (707)
.+-|....|..+++++.. ++.+.. ..|+..|.--...=-+..-..++++. ..-||..+ ..-....-.+.|.+
T Consensus 597 Ee~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEi 674 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEI 674 (835)
T ss_pred HHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhH
Confidence 345788888888888755 444432 34554443211111111122223322 12233222 22233344566777
Q ss_pred hHHHHHHHHHHccC-CC-CchhHHHHHHHhhhcCC
Q 043060 521 ELGESVAKHLLELE-PE-NPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 521 ~~A~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~ 553 (707)
+.|..++...-++- |. ++..|...=..-.+-|+
T Consensus 675 dRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 675 DRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 77777776666643 32 34455555555556666
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-10 Score=109.77 Aligned_cols=198 Identities=15% Similarity=0.114 Sum_probs=164.9
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 445 (707)
....+..+...|...|++++|.+.|++.. ..+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 45677888899999999999999998763 3356688888899999999999999999998842 2334577778888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A 523 (707)
+...|++++|.+.++.+.+..........+..+...+...|++++|.+.+++. ...|+ ...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998764222334567777889999999999999999986 44554 67888899999999999999
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 524 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
...++++++..|.++..+..++.++...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888888999999999999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.1e-09 Score=99.47 Aligned_cols=286 Identities=14% Similarity=0.142 Sum_probs=192.3
Q ss_pred CCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHH
Q 043060 209 RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288 (707)
Q Consensus 209 ~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 288 (707)
.|++.+|.++..+-. +.+-.| ...|..-..+.-..|+.+.+-+.+.++.+..-.++..+.-+........|+++.|.
T Consensus 97 eG~~~qAEkl~~rna--e~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNA--EHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhh--hcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 577777777777652 122222 23455555666677788888888877777644666777777778888888888888
Q ss_pred HHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCC
Q 043060 289 DLFESIE---KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ 365 (707)
Q Consensus 289 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 365 (707)
.-.++.. .+++........+|.+.|++.+...++.+|.+.|+--|+..- ++
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l--------- 227 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL--------- 227 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH---------
Confidence 7776654 457788888899999999999999999999888765443210 00
Q ss_pred CCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 043060 366 KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442 (707)
Q Consensus 366 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 442 (707)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+- ..
T Consensus 228 ---e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~ 300 (400)
T COG3071 228 ---EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CR 300 (400)
T ss_pred ---HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HH
Confidence 223344444444444444444445555542 35666666777778888888888888888877666662 22
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChh
Q 043060 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAAIWTSLLGACRVHGRLE 521 (707)
Q Consensus 443 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~ 521 (707)
+-.+.+-++.+.-.+..+...+.++..| ..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+..++.+.|+.+
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChH
Confidence 3345566676666666666666444444 56667777777777777777777764 66777777777777777777777
Q ss_pred HHHHHHHHHHc
Q 043060 522 LGESVAKHLLE 532 (707)
Q Consensus 522 ~A~~~~~~~~~ 532 (707)
+|.+..++.+.
T Consensus 379 ~A~~~r~e~L~ 389 (400)
T COG3071 379 EAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHH
Confidence 77777777764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.9e-09 Score=103.34 Aligned_cols=412 Identities=10% Similarity=0.008 Sum_probs=247.2
Q ss_pred hcccCCCChHHHHHHHhcCCC--CC-cchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCc-ccHHHHHHHHhccCChH
Q 043060 72 CAVSPFGDLSYALLVFETIRE--PN-QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT-YTFPFILKSCAKISAIS 147 (707)
Q Consensus 72 ~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~ 147 (707)
+-|.+.|.+++|++.+++..+ || .+-|.....+|...|+|++..+--.+.++. .|+- -.+..-.++.-..|++.
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHH
Confidence 567789999999999999875 77 778899999999999999999988887764 4542 23444445555667776
Q ss_pred HHHHHHHHHHH-hCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCcccc
Q 043060 148 EGKQIHAHVLK-LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE 226 (707)
Q Consensus 148 ~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 226 (707)
+|..=..-.-- .|+.. .. ...++.-..+..-..++.+-|.+-..+.. .-.+.|..|...=..+- ..
T Consensus 201 eal~D~tv~ci~~~F~n-~s-~~~~~eR~Lkk~a~~ka~e~~k~nr~p~l-PS~~fi~syf~sF~~~~----~~------ 267 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQN-AS-IEPMAERVLKKQAMKKAKEKLKENRPPVL-PSATFIASYFGSFHADP----KP------ 267 (606)
T ss_pred HHHHhhhHHHHhhhccc-ch-hHHHHHHHHHHHHHHHHHHhhcccCCCCC-CcHHHHHHHHhhccccc----cc------
Confidence 66432221111 11111 11 11111111111122333333332222222 22333333322111000 00
Q ss_pred CCCCCCHhhHHHHHHHHhcc--C---CchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---C
Q 043060 227 ENFVPNESTVVTVLSACAHM--G---SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR---D 298 (707)
Q Consensus 227 ~~~~p~~~t~~~ll~~~~~~--g---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~ 298 (707)
....+.......+..++... + .+..+.+.+.+ ....+..-... |
T Consensus 268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te----------------------------~~~~~~~~~~~n~~d 319 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATE----------------------------ECLGSESSLSVNEID 319 (606)
T ss_pred cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHH----------------------------Hhhhhhhhccccccc
Confidence 01111111222222222111 1 11111111111 11111111111 1
Q ss_pred ------hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHH
Q 043060 299 ------VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372 (707)
Q Consensus 299 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 372 (707)
..+...-..-+.-.|+...|.+.|+..+.....++.. |..+..++....+.++....|....+.++. ++.+
T Consensus 320 ~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~--n~dv 396 (606)
T KOG0547|consen 320 AELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPE--NPDV 396 (606)
T ss_pred hhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCC--CCch
Confidence 1122222223345677788888888887754433332 666677788888888888888888888877 6677
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMGYK---TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA 449 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 449 (707)
|..-..++.-.+++++|..=|++...- ++..|-.+..+..+.+++++++..|++.++. ++--...|+.....+..+
T Consensus 397 YyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDq 475 (606)
T KOG0547|consen 397 YYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQ 475 (606)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhH
Confidence 888888888888999999999887543 5556666767777788999999999998874 444445888888899999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-------h--HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 043060 450 GLLDIGRQYFNAMIQDYKISPK-------L--QHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHG 518 (707)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~p~-------~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g 518 (707)
++++.|.+.|+..++ +.|+ . .+..+++-. --.+++..|.+++++. .+.|. ...+-+|...-.+.|
T Consensus 476 qqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 476 QQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG 551 (606)
T ss_pred HhHHHHHHHHHHHHh---hccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh
Confidence 999999999988764 2333 1 111122211 1348899999999986 77776 778999999999999
Q ss_pred ChhHHHHHHHHHHccC
Q 043060 519 RLELGESVAKHLLELE 534 (707)
Q Consensus 519 ~~~~A~~~~~~~~~~~ 534 (707)
++++|+++|++...+-
T Consensus 552 ~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 552 KIDEAIELFEKSAQLA 567 (606)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999987764
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-09 Score=101.34 Aligned_cols=297 Identities=12% Similarity=0.133 Sum_probs=193.5
Q ss_pred CCHHHHHHHHHhcCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh------hhHHhHHHHHhccCCchH
Q 043060 282 GDLVKARDLFESIEKRDVISW---NVMIGGYTHTSDYKEALMLFRQMLQSNIEPND------VTFLSVLPACAYLGALDL 352 (707)
Q Consensus 282 g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~~~~~~ 352 (707)
.+.++|.++|-+|.+.|..++ -+|.+.|.+.|..|.|+++-+.+.+. ||. ...-.+..-|...|-+|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 344555555555554443332 23445555555555555555555432 221 011122233445555566
Q ss_pred HHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChH--------HHHHHHHHHHHcCCHHHHHHHH
Q 043060 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA--------SWNAMISGLAMHGKADKALSLF 424 (707)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~~~ 424 (707)
|+.+|..+...+.. -......|+..|-+..+|++|+++-++..+-+.. -|-.+...+....+.+.|+.++
T Consensus 126 AE~~f~~L~de~ef--a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 126 AEDIFNQLVDEGEF--AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHhcchhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 66666555554333 3445667788888888888888777655332222 3445566666778999999999
Q ss_pred HHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 043060 425 SRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP 502 (707)
Q Consensus 425 ~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 502 (707)
.+..+ ..|+.+ .-..+.......|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++ ...+
T Consensus 204 ~kAlq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 204 KKALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 99998 556655 4445667788999999999999998774 43334567788899999999999999999886 5555
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh---hhcCChhhHHHHHHHHhhCCCccCCcccEEe
Q 043060 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY---AGAGRWDDVATIRTRLNDKGMKKVPGCSSIE 579 (707)
Q Consensus 503 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~ 579 (707)
....-..+...-....-.+.|...+.+-+...|.- ..+..|++.. +..|++.+....++.|....++..|.+.+..
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~ 359 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQN 359 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecc
Confidence 66655666666566666778888888888888854 4444555443 3356788889999999988888777776665
Q ss_pred ECCEEEEE
Q 043060 580 VGSVVHEF 587 (707)
Q Consensus 580 ~~~~~~~~ 587 (707)
.+-..|.|
T Consensus 360 CGF~a~~l 367 (389)
T COG2956 360 CGFTAHTL 367 (389)
T ss_pred cCCcceee
Confidence 55555544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.5e-09 Score=103.72 Aligned_cols=278 Identities=12% Similarity=0.100 Sum_probs=219.1
Q ss_pred CCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhH
Q 043060 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDV---ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV 340 (707)
Q Consensus 264 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 340 (707)
...++.+.....+-+...+++.+..++++.+.+.|+ ..+..-|.++...|+..+-..+=.+|.+. .+-...+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 355667777778888899999999999999887654 45666788899999988888888888875 34466789999
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCH
Q 043060 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKA 417 (707)
Q Consensus 341 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 417 (707)
.--|...|..++|+..+......+.. -...|-.+...|+-.|.-++|...+....+ ..-..+--+..-|.+.+..
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~--fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT--FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc--ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence 88888899999999999998887666 456788999999999999999888765421 1111222344567888999
Q ss_pred HHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhc-CC---C-CChHHHHHHHHHHHHcCCHHHH
Q 043060 418 DKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDY-KI---S-PKLQHYGCMVDLLGRAGLFDEA 491 (707)
Q Consensus 418 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~---~-p~~~~~~~li~~~~~~g~~~~A 491 (707)
+.|.+.|.+... +-|+. ..++-+.-...+.+.+.+|..+|+.....- .+ . -...+++.|..+|.+.+++++|
T Consensus 397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999987 66654 467777666777899999999999876311 01 1 1345688899999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 043060 492 EALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN 546 (707)
Q Consensus 492 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 546 (707)
+..+++. ...| |..++.+++-.+...|+++.|...|.+++.+.|+|..+-..|..
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 9999986 4444 58899999999999999999999999999999998665555543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-09 Score=112.91 Aligned_cols=231 Identities=16% Similarity=0.184 Sum_probs=169.9
Q ss_pred hhHHhHHHHHhccCCchHHHHHHHHHHHh-----CCCCCcH-HHHhHHhhHHHhcCCHHHHHHHHhcCC--------CC-
Q 043060 335 VTFLSVLPACAYLGALDLGKWIHAYIDKN-----HQKLNNV-SLWTSLIDMYAKCGNIKAAEQVFDGMG--------YK- 399 (707)
Q Consensus 335 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~- 399 (707)
.|+..+...|...|+++.|...+...++. |...+.. ...+.+...|...+++++|..+|+++. ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555666777777777777777766554 2221122 223446778888999998888888762 11
Q ss_pred --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCC-CHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcC--C
Q 043060 400 --TLASWNAMISGLAMHGKADKALSLFSRMIG-----EGLQP-DDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYK--I 468 (707)
Q Consensus 400 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p-~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 468 (707)
-..+++.|..+|.+.|++++|...+++..+ .|..+ ... -++.+...|...+.+++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 224778888889999999988888877654 12222 222 466777789999999999999987766544 2
Q ss_pred CCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc-
Q 043060 469 SPK----LQHYGCMVDLLGRAGLFDEAEALLKTM---------EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLEL- 533 (707)
Q Consensus 469 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~- 533 (707)
.++ ..+++.|...|...|++++|.++++++ +..+. ...++.|...|.+.+++++|.++|++...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 257899999999999999999999986 12233 567888999999999999999999887753
Q ss_pred ---CCC---CchhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 534 ---EPE---NPGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 534 ---~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
+|+ ...+|..|+.+|.+.|++++|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 444 44678899999999999999999988875
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.5e-08 Score=94.60 Aligned_cols=306 Identities=11% Similarity=0.038 Sum_probs=219.9
Q ss_pred CCCCCHhhHHHHHHHHhc--cCCchHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHH
Q 043060 228 NFVPNESTVVTVLSACAH--MGSLELGNWVCSLIEGH-GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304 (707)
Q Consensus 228 ~~~p~~~t~~~ll~~~~~--~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 304 (707)
.+.|...+...-+.+++. .++-..+.+.+-.+.+. -++.|+.....+.+.|...|+.++|+..|++...-|+.+...
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~ 268 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA 268 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh
Confidence 344544555555555443 34444444444444443 467788999999999999999999999999877655443332
Q ss_pred ---HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHH
Q 043060 305 ---MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381 (707)
Q Consensus 305 ---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 381 (707)
..-.+.+.|+++....+...+.... +-+...|..-....-...+++.|..+-+..++.... +...+-.-..++.
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r--~~~alilKG~lL~ 345 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR--NHEALILKGRLLI 345 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc--cchHHHhccHHHH
Confidence 2344567888888888877776532 122223333333444567778888888887777665 6666666677888
Q ss_pred hcCCHHHHHHHHhcCC--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHh-ccCCHHHHH
Q 043060 382 KCGNIKAAEQVFDGMG--Y-KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL-SACN-HAGLLDIGR 456 (707)
Q Consensus 382 ~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~ 456 (707)
..|+.++|.-.|+... . -+..+|..++.+|...|++.+|..+-+...+. +..+..++..+. ..|. ....-++|.
T Consensus 346 ~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 8999999999998764 3 47889999999999999999999888776663 333444555442 3333 333457788
Q ss_pred HHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 043060 457 QYFNAMIQDYKISPK-LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534 (707)
Q Consensus 457 ~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 534 (707)
.++++.. .+.|+ ....+.+...+.+.|+.++++.++++. ...||....+.|.+.++..+.+++|...|..++.++
T Consensus 425 kf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 425 KFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 8888765 45564 456677888999999999999999985 677999999999999999999999999999999999
Q ss_pred CCCchh
Q 043060 535 PENPGA 540 (707)
Q Consensus 535 p~~~~~ 540 (707)
|++..+
T Consensus 502 P~~~~s 507 (564)
T KOG1174|consen 502 PKSKRT 507 (564)
T ss_pred ccchHH
Confidence 987543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.4e-09 Score=101.63 Aligned_cols=276 Identities=12% Similarity=0.117 Sum_probs=204.3
Q ss_pred cCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHH
Q 043060 281 CGDLVKARDLFESIEKR---DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357 (707)
Q Consensus 281 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 357 (707)
.|++..|+++..+-.+. ....|..-+.+--+.|+.+.+-.++.+..+.--.++.....+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 57888888887765432 344555556667778888888888888876432344444555556677888888888888
Q ss_pred HHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCCh-----------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 043060 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTL-----------ASWNAMISGLAMHGKADKALSLFSR 426 (707)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~ 426 (707)
..+.+.++. ++.+......+|.+.|++.....++..+.+... .+|+.++.-....+..+.-...|++
T Consensus 177 ~~ll~~~pr--~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEMTPR--HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHhCcC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 888888877 778888899999999999999999988865422 3677777766666666666667776
Q ss_pred HHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CH
Q 043060 427 MIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DA 504 (707)
Q Consensus 427 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~ 504 (707)
...+ .+-+...-.+++.-+...|+.++|.++.....++ +..|+.. .++ ...+-++.+.-++..++- ...| ++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RLI-PRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HHH-hhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 6554 5556666777888889999999999999888775 5555521 111 223445555544444442 2223 35
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
..+.+|+..|.+++.+.+|...++.+++..| +...|..++.++.+.|+..+|.+++++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 8899999999999999999999999999998 45899999999999999999999998876
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-09 Score=117.98 Aligned_cols=245 Identities=14% Similarity=0.051 Sum_probs=180.6
Q ss_pred CHHHHHHHHHHHhhcCCCCChh-hHHhHHHHHh---------ccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhc
Q 043060 314 DYKEALMLFRQMLQSNIEPNDV-TFLSVLPACA---------YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383 (707)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 383 (707)
..++|+++|++..+. .|+.. .+..+..++. ..++.+.|...++.+++..+. +...+..+..++...
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~--~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN--NPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc
Confidence 457888888888764 45433 3333333222 224478899999999888776 788888999999999
Q ss_pred CCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHH
Q 043060 384 GNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYF 459 (707)
Q Consensus 384 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 459 (707)
|++++|...|++.. ..+...|..+...+...|++++|+..+++..+ ..|+.. .+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999864 33566888999999999999999999999999 667654 3334455567789999999999
Q ss_pred HHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 460 NAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 460 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
+++.+. ..| +...+..+..+|...|++++|...++++ +..|+ ...++.+...+...| +.|...++++++..-.
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 988753 234 4556777888999999999999999987 44555 455666666777777 4788888887764322
Q ss_pred CchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.+.....+...|.-.|+-+.+... +++.+.+.
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 222223367778888888888776 77776654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-07 Score=96.53 Aligned_cols=490 Identities=14% Similarity=0.148 Sum_probs=294.0
Q ss_pred hhhhhhhchhhcccCCCChHHHHHHHhcCCC-----CCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHH
Q 043060 62 QFALSKLIEICAVSPFGDLSYALLVFETIRE-----PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136 (707)
Q Consensus 62 ~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 136 (707)
+.+|-..+ .+..+.|++..-++.|++... .-...|...+.-....+-++-++.+|++.++. ++..-.--
T Consensus 102 pRIwl~Yl--q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eey 175 (835)
T KOG2047|consen 102 PRIWLDYL--QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEY 175 (835)
T ss_pred CHHHHHHH--HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHH
Confidence 34555555 677788999999999987542 23446888888888899999999999998864 33335666
Q ss_pred HHHHhccCChHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhCCC---hhHHHHHHhcCCCC--C--eehHHHHH
Q 043060 137 LKSCAKISAISEGKQIHAHVLKLG------LESDPFVHTSLINMYAQNGE---LESARLVFNKSSLR--D--AVSYTALI 203 (707)
Q Consensus 137 l~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~~~~~--~--~~~~~~li 203 (707)
+.-++..+++++|.+.+..++... .+.+...|.-+.+..++.-+ --....+++.+..+ | ...|++|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 777788899999998888776432 24445566666666665432 22344556665544 3 34799999
Q ss_pred HHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCC----------------------chHHHHHHHHHHH
Q 043060 204 TGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS----------------------LELGNWVCSLIEG 261 (707)
Q Consensus 204 ~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~----------------------~~~a~~~~~~~~~ 261 (707)
.-|.+.|++++|.++|++... -.....-|..+..+|+.-.. ++....-++.+..
T Consensus 256 dYYIr~g~~ekarDvyeeai~----~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQ----TVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHH----hheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 999999999999999998743 12233345555555543211 1111222222222
Q ss_pred cCC-----------CchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC---C------ChhhHHHHHHHHHhcCCHHHHHHH
Q 043060 262 HGL-----------GSNLHVTNALIDMYSKCGDLVKARDLFESIEK---R------DVISWNVMIGGYTHTSDYKEALML 321 (707)
Q Consensus 262 ~g~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~g~~~~A~~~ 321 (707)
.+. +.++..|..-+.. ..|+..+-..+|.+..+ | --..|..+..-|-.+|+.+.|..+
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 110 1112222222221 12334444444444321 1 123577777778888888888888
Q ss_pred HHHHhhcCCCCChh----hHHhHHHHHhccCCchHHHHHHHHHHHhC----------CCCC------cHHHHhHHhhHHH
Q 043060 322 FRQMLQSNIEPNDV----TFLSVLPACAYLGALDLGKWIHAYIDKNH----------QKLN------NVSLWTSLIDMYA 381 (707)
Q Consensus 322 ~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------~~~~------~~~~~~~li~~y~ 381 (707)
|++..+...+ ... +|..-...=.+..+++.|..+.+.+.... ..++ +..+|..+++.--
T Consensus 410 feka~~V~y~-~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 410 FEKATKVPYK-TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHhhcCCcc-chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 8877654321 111 22222222233445566666555443211 1111 3345555666666
Q ss_pred hcCCHHHHHHHHhcCCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHh---ccCCHHH
Q 043060 382 KCGNIKAAEQVFDGMGYK---TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACN---HAGLLDI 454 (707)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---~~g~~~~ 454 (707)
..|-++....+++++.+- .+..--....-+-.+.-++++.++|++-+..=-.|+.. .|+..+.-+. ....++.
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 677777777777766432 22211122223445666888888888776653345554 4555544433 3457999
Q ss_pred HHHHHHHhHHhcCCCCChHH--HHHHHHHHHHcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChhHHHHHHH
Q 043060 455 GRQYFNAMIQDYKISPKLQH--YGCMVDLLGRAGLFDEAEALLKTM--EMKPD--AAIWTSLLGACRVHGRLELGESVAK 528 (707)
Q Consensus 455 a~~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~ 528 (707)
|+.+|+...+ +.+|...- |-.....=-+-|....|++++++. .+++. ...||..|.--...=-+..-..+|+
T Consensus 569 aRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYe 646 (835)
T KOG2047|consen 569 ARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYE 646 (835)
T ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Confidence 9999999987 66664322 222222233568889999999997 34443 5678888865444333566778999
Q ss_pred HHHccCCCCc--hhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 529 HLLELEPENP--GAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 529 ~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
++++.-|++. ......+++-.+.|..+.|+.++..-.+
T Consensus 647 kaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 647 KAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 9999877543 3455678889999999999999876554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4e-09 Score=111.01 Aligned_cols=486 Identities=13% Similarity=0.097 Sum_probs=290.6
Q ss_pred CCCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 043060 92 EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSL 171 (707)
Q Consensus 92 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 171 (707)
.||-++|..+|.-|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.++ .|.+.+|+.|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 478899999999999999999888 8888888777788888999998888888887776 6778899999
Q ss_pred HHHHHhCCChhH---HHHHHhcCCC---------------------C-CeehHHHHHHHHHhCCChhHHHHHHHhCcccc
Q 043060 172 INMYAQNGELES---ARLVFNKSSL---------------------R-DAVSYTALITGYASRGYLDDARQLFDEMPIRE 226 (707)
Q Consensus 172 i~~~~~~g~~~~---A~~~f~~~~~---------------------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 226 (707)
...|...||+.. .++.+..+.. | ....-...+.-..-.|-++.+++++..|+..
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs- 168 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS- 168 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc-
Confidence 999999998654 2331211110 0 0111223444555667788888888777531
Q ss_pred CCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC----hhhH
Q 043060 227 ENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD----VISW 302 (707)
Q Consensus 227 ~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~ 302 (707)
....|..+ +++-+... ..-.+++.....+.--.++..++.++++.-.-.|+++.|..++..|.++. ..-|
T Consensus 169 a~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 169 AWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred cccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 22222222 35544433 23344455444443226899999999999999999999999999998763 2223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHh
Q 043060 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382 (707)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~ 382 (707)
-.++-+ .+....+..+++-|.+.|+.|+..|+..-+..+...|....+...... .... ...++..+..+...
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~----~hg~-tAavrsaa~rg~~a 314 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQL----AHGF-TAAVRSAACRGLLA 314 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccch----hhhh-hHHHHHHHhcccHh
Confidence 334433 788888899999999999999999998888888776553322221110 0000 22233333333111
Q ss_pred cCCHHHH--HHHHhcCC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHh-HHHHHHHHHhccC
Q 043060 383 CGNIKAA--EQVFDGMG-------YKTLASWNAMISGLAMHGKADKALSLFSRMIGE--GLQPDDI-TFVGVLSACNHAG 450 (707)
Q Consensus 383 ~g~~~~A--~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~-t~~~ll~a~~~~g 450 (707)
..+++.- .-+....+ .....+|...+. ...+|+.++..++-..|..- ...++.+ .|..++.-|.+.-
T Consensus 315 ~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~ 393 (1088)
T KOG4318|consen 315 NKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRI 393 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHH
Confidence 1122111 11111111 112244544333 34478999999998888653 2344443 5555555444321
Q ss_pred CH---------HHHHHH----------HHHhHHhcCCCCCh----------------------------HHHHHHHHHHH
Q 043060 451 LL---------DIGRQY----------FNAMIQDYKISPKL----------------------------QHYGCMVDLLG 483 (707)
Q Consensus 451 ~~---------~~a~~~----------~~~~~~~~~~~p~~----------------------------~~~~~li~~~~ 483 (707)
.. ..+.+. -+.+ . ...|+. ..-+.++..+.
T Consensus 394 e~~~~~~i~~~~qgls~~l~se~tp~vsell-~--~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~ 470 (1088)
T KOG4318|consen 394 ERHICSRIYYAGQGLSLNLNSEDTPRVSELL-E--NLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN 470 (1088)
T ss_pred HhhHHHHHHHHHHHHHhhhchhhhHHHHHHH-H--HhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 10 011110 0000 0 011111 11233444455
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC---CCchhHHHHHHHhhhcCChhhHHHH
Q 043060 484 RAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP---ENPGAYVLLSNMYAGAGRWDDVATI 560 (707)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~ 560 (707)
+.-+..+++...++....-=...|..|+.-+..+.+.+.|....++....+. -+..-+..+.+.+.+.+...++.++
T Consensus 471 se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ti 550 (1088)
T KOG4318|consen 471 SEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTI 550 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHH
Confidence 5555555554443331111136788999999999999999999988876543 2446788999999999999999999
Q ss_pred HHHHhhCCCccCCcccEEeECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCcc
Q 043060 561 RTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVP 618 (707)
Q Consensus 561 ~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p 618 (707)
.+++.+.-. ..|-+-. .++.+..+...-++. +.+.++.+.+...|+.-
T Consensus 551 L~e~ks~a~-n~~~~a~-----~~f~~lns~a~agqq----e~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 551 LYEDKSSAE-NEPLVAI-----ILFPLLNSGAPAGQQ----EKLKKLADILVSLGLSE 598 (1088)
T ss_pred HhhhhHHhh-CCchHHH-----HHHHHHhhhhhccCH----HHHHHHHHHHHHhhhhh
Confidence 999987322 2221100 011112222222332 34777888888888776
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-11 Score=85.77 Aligned_cols=50 Identities=26% Similarity=0.523 Sum_probs=46.6
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhc
Q 043060 93 PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAK 142 (707)
Q Consensus 93 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 142 (707)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-07 Score=93.06 Aligned_cols=434 Identities=12% Similarity=0.132 Sum_probs=246.3
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH--HHHHH--Hh
Q 043060 102 IRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTS--LINMY--AQ 177 (707)
Q Consensus 102 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~--~~ 177 (707)
++-+..+|++++|+....+++..+ +-|...+..-+-+..+.+.+++|..+.+. .+ -..+++. +=.+| .+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHH
Confidence 344556667777777777776543 33444555555666667777777643332 11 0111111 12333 35
Q ss_pred CCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCC-CHhhHHHHHHHHhccCCchHHHHHH
Q 043060 178 NGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP-NESTVVTVLSACAHMGSLELGNWVC 256 (707)
Q Consensus 178 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~ 256 (707)
.+..|+|...++.....|..+...-...+.+.|++++|+++|+.+.. .+..- |...-..++.+-... .+.
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k--n~~dd~d~~~r~nl~a~~a~l----~~~--- 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK--NNSDDQDEERRANLLAVAAAL----QVQ--- 162 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHhh----hHH---
Confidence 67778887777755444544555556677778888888888887742 22111 111112222211110 010
Q ss_pred HHHHHcCCCc--hhHHHHHHHHHHHhcCCHHHHHHHHHhc--------CCCCh----------hhHHHHHHHHHhcCCHH
Q 043060 257 SLIEGHGLGS--NLHVTNALIDMYSKCGDLVKARDLFESI--------EKRDV----------ISWNVMIGGYTHTSDYK 316 (707)
Q Consensus 257 ~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~----------~~~~~li~~~~~~g~~~ 316 (707)
.+......| +-..+-.....+...|++.+|+++++.. .+.|. ..---|...+...|+-+
T Consensus 163 -~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 -LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred -HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 111111122 1222233445667778888888888776 21111 11223456677889999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHhH---HHHHhccCCchH--------------HHHHHHHHHHhCCCCCcHHHHhHHhhH
Q 043060 317 EALMLFRQMLQSNIEPNDVTFLSV---LPACAYLGALDL--------------GKWIHAYIDKNHQKLNNVSLWTSLIDM 379 (707)
Q Consensus 317 ~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~--------------a~~~~~~~~~~~~~~~~~~~~~~li~~ 379 (707)
+|.+++...+... .+|....... |.+.....++-. +......+...... ....-+.++.+
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~--~i~~N~~lL~l 318 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ--AIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 9999999988765 3444322221 122222222111 11111111111111 22233455555
Q ss_pred HHhcCCHHHHHHHHhcCCCCC-hHHHHHHHHHH--HHcCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhccCCHHH
Q 043060 380 YAKCGNIKAAEQVFDGMGYKT-LASWNAMISGL--AMHGKADKALSLFSRMIGEGLQPDD--ITFVGVLSACNHAGLLDI 454 (707)
Q Consensus 380 y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 454 (707)
|. +..+.+.++-...+... ...+..++... .+.....+|.+++...-+. .|.. ......+.....+|+++.
T Consensus 319 ~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 319 FT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred Hh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHH
Confidence 54 55677777777776543 33444444332 2233578888888887763 4544 355556667788999999
Q ss_pred HHHHHH--------HhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhc
Q 043060 455 GRQYFN--------AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM--------EMKPD-AAIWTSLLGACRVH 517 (707)
Q Consensus 455 a~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~ 517 (707)
|.+++. .+.+ .+. .+.+..+++.+|.+.++-+.|..++.+. ..++. ..+|.-+...-.++
T Consensus 395 A~~il~~~~~~~~ss~~~-~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILE-AKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHhhhhhhhhhh-hcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 999998 4432 133 3445667888899988877777776654 22233 34555555566778
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHH
Q 043060 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 518 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 563 (707)
|+-++|...++++++.+|++..+...+..+|++. +.+.|..+-+.
T Consensus 472 G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred CchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 9999999999999999999999999999999876 45566655433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.5e-11 Score=82.33 Aligned_cols=50 Identities=30% Similarity=0.556 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 043060 399 KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448 (707)
Q Consensus 399 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 448 (707)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.1e-09 Score=115.93 Aligned_cols=210 Identities=13% Similarity=0.026 Sum_probs=167.2
Q ss_pred CchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHh---------cCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCC
Q 043060 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK---------CGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGK 416 (707)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~---------~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 416 (707)
+.+.|...++..++..+. +...+..+..+|.. .+++++|...+++.. ..+...|..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~--~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN--SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 457889999999988776 66677777665542 345889999998874 3467789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHHHH
Q 043060 417 ADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL-QHYGCMVDLLGRAGLFDEAEAL 494 (707)
Q Consensus 417 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 494 (707)
+++|+..|++..+ ..|+.. .+..+..++...|++++|...++.+.+ ..|+. ..+..+...+...|++++|++.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 667755 677888899999999999999999875 34432 3333445567778999999999
Q ss_pred HHhC-CC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 495 LKTM-EM-KPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 495 ~~~~-~~-~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
+++. .. .|+ +..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9886 22 354 5567778888899999999999999998888888888888888888888 4888877777653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-08 Score=99.22 Aligned_cols=196 Identities=18% Similarity=0.203 Sum_probs=111.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhh
Q 043060 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378 (707)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 378 (707)
...+..+...|...|++++|.+.+++..+.. |+ +...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~-----------------------------------~~~~~~~la~ 73 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PD-----------------------------------DYLAYLALAL 73 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc-----------------------------------cHHHHHHHHH
Confidence 3456667777777777777777777776542 22 2333444445
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHH
Q 043060 379 MYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDI 454 (707)
Q Consensus 379 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 454 (707)
.|...|++++|.+.|++.. ..+...+..+...+...|++++|++.|++.......|. ...+..+...+...|++++
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 74 YYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHH
Confidence 5555555555555554432 22334455555555666666666666666655322222 2244445556666666666
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 455 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
|...++...+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..++..+...|+.+.|....+.+.+
T Consensus 154 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 154 AEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66666666542 2223455666666677777777777766664 2223 345555666666667777777776666554
Q ss_pred c
Q 043060 533 L 533 (707)
Q Consensus 533 ~ 533 (707)
.
T Consensus 232 ~ 232 (234)
T TIGR02521 232 L 232 (234)
T ss_pred h
Confidence 4
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.6e-09 Score=104.73 Aligned_cols=191 Identities=18% Similarity=0.149 Sum_probs=125.3
Q ss_pred HHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHH
Q 043060 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSA 445 (707)
Q Consensus 370 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a 445 (707)
...+..+...|.+.|+.++|...|++.. ..+...|+.+...+...|++++|+..|++..+ +.|+.. ++..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 4456677777778888888888777653 33566788888888888888888888888887 566543 66777777
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHH
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM--EMKPDAAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A 523 (707)
+...|++++|.+.|+...+. .|+..........+...+++++|.+.|++. ...|+...| .......|+...+
T Consensus 142 l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW---NIVEFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH---HHHHHHccCCCHH
Confidence 77888888888888877653 343322222222344567788888888653 222332222 2223335555443
Q ss_pred HHHHHHHH-------ccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 524 ESVAKHLL-------ELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 524 ~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+.++.+. ++.|+.+.+|..++.+|.+.|++++|+..|++..+.++
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2333333 34556667888888888888888888888888877554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.3e-07 Score=84.30 Aligned_cols=192 Identities=17% Similarity=0.118 Sum_probs=102.2
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHCCCCCCHh-HHHHHHH
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK-------ADKALSLFSRMIGEGLQPDDI-TFVGVLS 444 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 444 (707)
.-.|+--|.+.+++++|..+.++.....+.-|-.-...++.+|+ ..-|.+.|+-.-+++..-|.+ --.++.+
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 34456667777777777777777655444333222222333332 233444444333333333332 2233444
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHH-HHhcCChh
Q 043060 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME-MK-PDAAIWTSLLGA-CRVHGRLE 521 (707)
Q Consensus 445 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~-~~~~g~~~ 521 (707)
++.-..++++.+-+++.+.. |-...|...+| +..+++..|.+.+|+++|-++. .+ .|..+|.+++.- |.+.++.+
T Consensus 368 ~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCch
Confidence 44555566777777776643 33444444443 5667777777777777776652 11 245556555543 34556666
Q ss_pred HHHHHHHHHHccC-CCC-chhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 522 LGESVAKHLLELE-PEN-PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 522 ~A~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.|..+ +++.+ |.+ ......+++-|.+++.+--|.+.|+.+...++
T Consensus 446 lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 446 LAWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 65444 33333 222 22334556667777777777777777766554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-07 Score=89.53 Aligned_cols=431 Identities=11% Similarity=0.058 Sum_probs=240.3
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHH-HHHHHHHhCC
Q 043060 101 IIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHT-SLINMYAQNG 179 (707)
Q Consensus 101 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g 179 (707)
+...+...|++++|+..|..+.+.. .|+......+.-+.--.|.+.+|+++-.. .|+....+ .|...-.+.+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~k------a~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEK------APKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHhC
Confidence 3456677888888888888777644 44455554444444456777777776554 23333444 3444455566
Q ss_pred ChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHH-HhccCCchHHHHHHHH
Q 043060 180 ELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSA-CAHMGSLELGNWVCSL 258 (707)
Q Consensus 180 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~ 258 (707)
+-++-..+-+.+... ..---+|.+.....-.+.+|++++.+.+. -.|+-...+.-+.. |.+..-++-+.+++.-
T Consensus 136 dEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~----dn~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQ----DNPEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred cHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHh----cChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 655555544444322 11122333333444567888888888753 23455555544443 4566666767777776
Q ss_pred HHHcCCCchhHHHHHHHHHHHhc--CCHHHHH--HHHHhcCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHhhcC
Q 043060 259 IEGHGLGSNLHVTNALIDMYSKC--GDLVKAR--DLFESIEKRDVISWNVMIGGYTHT-----SDYKEALMLFRQMLQSN 329 (707)
Q Consensus 259 ~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~--~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g 329 (707)
.++. ++.++...|..+.-..+. |+..+++ .+-+...+. | ..+.-+++. .+.+.|++++-.+...
T Consensus 211 YL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~- 283 (557)
T KOG3785|consen 211 YLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH- 283 (557)
T ss_pred HHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh-
Confidence 6654 344445555554444443 3322221 111111111 1 111222221 2345566665555432
Q ss_pred CCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhH-----HhhHHHhcCCHHHHHHHHhcCCCC-----
Q 043060 330 IEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS-----LIDMYAKCGNIKAAEQVFDGMGYK----- 399 (707)
Q Consensus 330 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----li~~y~~~g~~~~A~~~~~~~~~~----- 399 (707)
-|... ..++--+.+.+++.+|..+ +....+..|...+... +..-......+.-|.+.|+-....
T Consensus 284 -IPEAR--lNL~iYyL~q~dVqeA~~L---~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD 357 (557)
T KOG3785|consen 284 -IPEAR--LNLIIYYLNQNDVQEAISL---CKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECD 357 (557)
T ss_pred -ChHhh--hhheeeecccccHHHHHHH---HhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccc
Confidence 22221 1222234455555544433 3333333222222222 222222333466677777655432
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH-HHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY-GCM 478 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l 478 (707)
.+.--.+|.+.+.-..++++.+-.+.....-- ..|...-..+..+.+..|++.+|.++|-.+... .++ +..+| ..|
T Consensus 358 TIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~L 434 (557)
T KOG3785|consen 358 TIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSML 434 (557)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHH
Confidence 23345677777777788889888888887753 333333345778999999999999999877431 222 34455 456
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhH
Q 043060 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTS-LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~-ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 557 (707)
..+|.+.++++-|.+++-++....+..+... +..-|.+.+.+--|-+.|+.+-.++|. |..|. |+-...
T Consensus 435 ArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnWe---------GKRGAC 504 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENWE---------GKRGAC 504 (557)
T ss_pred HHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-ccccC---------CccchH
Confidence 6889999999999999998865445554444 456799999999999999998888883 34332 333334
Q ss_pred HHHHHHHhhCCC
Q 043060 558 ATIRTRLNDKGM 569 (707)
Q Consensus 558 ~~~~~~m~~~~~ 569 (707)
.-+|..+....-
T Consensus 505 aG~f~~l~~~~~ 516 (557)
T KOG3785|consen 505 AGLFRQLANHKT 516 (557)
T ss_pred HHHHHHHHcCCC
Confidence 455665554433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-08 Score=101.22 Aligned_cols=233 Identities=18% Similarity=0.238 Sum_probs=159.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCC----------Chh-hHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCCC
Q 043060 268 LHVTNALIDMYSKCGDLVKARDLFESIEKR----------DVI-SWNVMIGGYTHTSDYKEALMLFRQMLQSN---IEPN 333 (707)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~ 333 (707)
..+...|..+|...|+++.|+.+|+...+. .+. ..+.+...|...+++++|..+|+++...- .-++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445555777777777777777777665432 111 23446678888899999999988886521 1111
Q ss_pred hhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC----------CCChH-
Q 043060 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG----------YKTLA- 402 (707)
Q Consensus 334 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----------~~~~~- 402 (707)
... -..+++.|..+|.+.|++++|...+++.. .+.+.
T Consensus 279 h~~--------------------------------va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 279 HPA--------------------------------VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred CHH--------------------------------HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 111 23345556666677777666666555431 11222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHHhc----C-CCC
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGE---GLQPDD----ITFVGVLSACNHAGLLDIGRQYFNAMIQDY----K-ISP 470 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p 470 (707)
.++.++..+...+++++|..++++..+. -..++. -+++.|...|.+.|++++|.++|++++... + ..+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 4566677778888888888888766542 123333 278888889999999999999998877652 1 122
Q ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 471 -KLQHYGCMVDLLGRAGLFDEAEALLKTM--------EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 471 -~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
....++.|...|.+.++.++|.++|.+. +..|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2356778888899999999998888874 34466 67899999999999999999999998874
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3e-09 Score=99.45 Aligned_cols=226 Identities=14% Similarity=0.096 Sum_probs=148.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHh
Q 043060 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK 382 (707)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~ 382 (707)
+.|..+|.+.|.+.+|.+.|+..++. .|-..|| -.|...|.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTf------------------------------------llLskvY~r 268 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTF------------------------------------LLLSKVYQR 268 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHH------------------------------------HHHHHHHHH
Confidence 45666777777777777777666554 2333344 444455555
Q ss_pred cCCHHHHHHHHhcCCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHH
Q 043060 383 CGNIKAAEQVFDGMGY--K-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQY 458 (707)
Q Consensus 383 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~ 458 (707)
..+++.|+.+|.+-.+ | |+.....+...+...++.++|.++|++..+ ..|+.+ ....+...|.-.++.+-|..+
T Consensus 269 idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 269 IDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHH
Confidence 5555555555554322 1 333334444555555666666666666655 334333 444445555556666666666
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 043060 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM---EMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLEL 533 (707)
Q Consensus 459 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 533 (707)
++++.+- |+ .+.+.|+.+.-++.-.+++|-++.-|++. ...|+ ..+|-.|.......||+..|.+.|+-++..
T Consensus 347 YRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 347 YRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred HHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 6666553 33 34455555555566666666666666654 22344 678888888889999999999999999999
Q ss_pred CCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 534 EPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 534 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
+|++..+++.|+..-.+.|++++|..++....+....
T Consensus 425 d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 425 DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 9999999999999999999999999999988775543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.6e-09 Score=92.61 Aligned_cols=163 Identities=16% Similarity=0.178 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 481 (707)
+...+.-+|.+.|+...|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|+...+ --+.+..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHH
Confidence 345567788888999999999998888 677765 788888888889999999999888875 223356778888888
Q ss_pred HHHcCCHHHHHHHHHhCCCCC---C-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhH
Q 043060 482 LGRAGLFDEAEALLKTMEMKP---D-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~p---~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 557 (707)
+|..|++++|...|++.-..| . ..+|..+.....+.|+.+.|+..+++.++.+|+++.+...+++...+.|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999873333 3 678999998889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 043060 558 ATIRTRLNDKGM 569 (707)
Q Consensus 558 ~~~~~~m~~~~~ 569 (707)
..+++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999887765
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-08 Score=98.59 Aligned_cols=225 Identities=15% Similarity=0.028 Sum_probs=144.8
Q ss_pred CHHHHHHHHHHHhhcC-CCCC--hhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHH
Q 043060 314 DYKEALMLFRQMLQSN-IEPN--DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390 (707)
Q Consensus 314 ~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 390 (707)
..+.++.-+.+++... ..|+ ...|......+...|+.+.|...+...++..+. +...|+.+...|...|++++|.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD--MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCCHHHHH
Confidence 3444555555554321 1111 122334444455556666666666666665554 6778888999999999999999
Q ss_pred HHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 043060 391 QVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYK 467 (707)
Q Consensus 391 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 467 (707)
+.|++.. ..+..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 9998773 33567888888889999999999999999988 567654322222334567789999999977654 2
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHH--HHHHHh-CCC----CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc-
Q 043060 468 ISPKLQHYGCMVDLLGRAGLFDEA--EALLKT-MEM----KPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP- 538 (707)
Q Consensus 468 ~~p~~~~~~~li~~~~~~g~~~~A--~~~~~~-~~~----~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~- 538 (707)
..|+...+ .++. ...|+..++ .+.+.+ ... .|+ ...|..+...+...|++++|+..|+++++.+|.+.
T Consensus 195 ~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33332222 2333 335555443 333322 111 222 46899999999999999999999999999997543
Q ss_pred hhHHHHHHH
Q 043060 539 GAYVLLSNM 547 (707)
Q Consensus 539 ~~~~~l~~~ 547 (707)
..-..++..
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 333344443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.1e-07 Score=85.82 Aligned_cols=388 Identities=12% Similarity=0.071 Sum_probs=242.3
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehH-HHHHHHHHhCCC-hhHHHHHHHhCccccCCCCCCHhhHHHHHH
Q 043060 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSY-TALITGYASRGY-LDDARQLFDEMPIREENFVPNESTVVTVLS 241 (707)
Q Consensus 164 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~-~~li~~~~~~g~-~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~ 241 (707)
+...-...+..|...++-+.|...+.+.+..-...- |.|+.-+-+.|- -.++.--+.+.. ++..+ .+ ..|.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevv-recp~-----aL-~~i~ 168 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVI-RECPM-----AL-QVIE 168 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHH-Hhcch-----HH-HHHH
Confidence 344455677788888899999999888886643333 444433333332 112222222221 00000 00 0011
Q ss_pred HHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHH--hcCCHHHHHHHHHhcC-----CCChhhHHHHHHHHHhcCC
Q 043060 242 ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYS--KCGDLVKARDLFESIE-----KRDVISWNVMIGGYTHTSD 314 (707)
Q Consensus 242 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~ 314 (707)
+..+.+ +..+...-..|-....+|+......-+.+|+ -.++...|...|-... ..|+.....+...+...|+
T Consensus 169 ~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gd 247 (564)
T KOG1174|consen 169 ALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGD 247 (564)
T ss_pred HHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcC
Confidence 111000 0001111111222223333333333344433 3344444444443332 2477788899999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHhH-HHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHH
Q 043060 315 YKEALMLFRQMLQSNIEPNDVTFLSV-LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393 (707)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 393 (707)
.++|+..|++.+. +.|+..+-.-+ .-.+...|+.+....+...+...... ....|..-.......++++.|+.+-
T Consensus 248 n~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~--ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 248 YFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY--TASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred chHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc--chhhhhhhhhhhhhhhhHHHHHHHH
Confidence 9999999999875 34544331111 11235667777777776666554322 2333444444555677888998888
Q ss_pred hcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 043060 394 DGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469 (707)
Q Consensus 394 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 469 (707)
++... +++..+-.-...+.+.|+.++|.-.|+..+. +.|. -..|..|+.+|...|.+.+|...-+...+ -++
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~ 399 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQ 399 (564)
T ss_pred HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhh
Confidence 87654 3455555555678889999999999999988 6664 45999999999999999999887776665 333
Q ss_pred CChHHHHHHH-HHHHH-cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHH
Q 043060 470 PKLQHYGCMV-DLLGR-AGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545 (707)
Q Consensus 470 p~~~~~~~li-~~~~~-~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 545 (707)
.+..+.+.+. ..+.- ..--++|.+++++. .++|+ ....+.+...|...|..+.++.++++.+...|++ ..++.|+
T Consensus 400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lg 478 (564)
T KOG1174|consen 400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLG 478 (564)
T ss_pred cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHH
Confidence 4555554442 23322 22347788998884 78898 6778888889999999999999999999998854 7899999
Q ss_pred HHhhhcCChhhHHHHHHHHhhCC
Q 043060 546 NMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 546 ~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
+.+...+.+.+|.+.|......+
T Consensus 479 d~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC
Confidence 99999999999999998876543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-06 Score=93.74 Aligned_cols=467 Identities=13% Similarity=0.132 Sum_probs=265.6
Q ss_pred hcccCCCChHHHHHHHhcCCC-CCcchHHHH-----HHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC
Q 043060 72 CAVSPFGDLSYALLVFETIRE-PNQVIWNNI-----IRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA 145 (707)
Q Consensus 72 ~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 145 (707)
+.+-|.|-...|++.|..+.. .-++..+.+ +-.|.-.-.++++++.++.|+..+++-|..+...+..-|...-.
T Consensus 614 qLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg 693 (1666)
T KOG0985|consen 614 QLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLG 693 (1666)
T ss_pred HHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 566678888888888877764 111111111 23444455788999999999988887777766666665555444
Q ss_pred hHHHHHHHHHHHHh-----------CCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCC---------------C-----
Q 043060 146 ISEGKQIHAHVLKL-----------GLESDPFVHTSLINMYAQNGELESARLVFNKSSL---------------R----- 194 (707)
Q Consensus 146 ~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---------------~----- 194 (707)
.+.-.++|+..... ++..|+.+.-..|.+.++.|++.+.+++-++-.. .
T Consensus 694 ~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPL 773 (1666)
T KOG0985|consen 694 AQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPL 773 (1666)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCce
Confidence 45555555544322 3466778888899999999999999888764321 0
Q ss_pred -----------CeehH------HHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhH-------------HHHHHHHh
Q 043060 195 -----------DAVSY------TALITGYASRGYLDDARQLFDEMPIREENFVPNESTV-------------VTVLSACA 244 (707)
Q Consensus 195 -----------~~~~~------~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~-------------~~ll~~~~ 244 (707)
|.+.| ...|..|++.=++.+.-.+...++. +.-+.... ..+..-+-
T Consensus 774 iiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD----~dC~E~~ik~Li~~v~gq~~~deLv~EvE 849 (1666)
T KOG0985|consen 774 IIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLD----VDCSEDFIKNLILSVRGQFPVDELVEEVE 849 (1666)
T ss_pred EEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhc----CCCcHHHHHHHHHHHhccCChHHHHHHHH
Confidence 11111 1234445544333333333322211 11111111 12222333
Q ss_pred ccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHH--------------------------------------
Q 043060 245 HMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK-------------------------------------- 286 (707)
Q Consensus 245 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-------------------------------------- 286 (707)
+.+++..-...++..+..| ..|+.++|+|...|...++-.+
T Consensus 850 kRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~e 928 (1666)
T KOG0985|consen 850 KRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLE 928 (1666)
T ss_pred hhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHH
Confidence 4444555555566666666 4577888888877765542111
Q ss_pred --------------HHHHHHhc--------C---------------------CCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043060 287 --------------ARDLFESI--------E---------------------KRDVISWNVMIGGYTHTSDYKEALMLFR 323 (707)
Q Consensus 287 --------------A~~~~~~~--------~---------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~ 323 (707)
|+-+.++. . ..|+..-+..+.++...+-+.+-+++++
T Consensus 929 lI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLE 1008 (1666)
T KOG0985|consen 929 LINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLE 1008 (1666)
T ss_pred HHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 00000000 0 0122222333445555555555555555
Q ss_pred HHhhcCCCC-ChhhH-HhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC----
Q 043060 324 QMLQSNIEP-NDVTF-LSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---- 397 (707)
Q Consensus 324 ~m~~~g~~p-~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---- 397 (707)
+..-..-.. ....+ +.++-. +-..+...+.+..+.+-.. +. -.+.......+-+++|..+|++..
T Consensus 1009 KIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdny--Da------~~ia~iai~~~LyEEAF~ifkkf~~n~~ 1079 (1666)
T KOG0985|consen 1009 KIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNY--DA------PDIAEIAIENQLYEEAFAIFKKFDMNVS 1079 (1666)
T ss_pred HHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccC--Cc------hhHHHHHhhhhHHHHHHHHHHHhcccHH
Confidence 554221000 00001 111100 0000111111111111000 00 001112222333444444444321
Q ss_pred ---------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHH
Q 043060 398 ---------------------YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456 (707)
Q Consensus 398 ---------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 456 (707)
-..+..|..+..+-.+.|...+|++-|-+. -|+..|.-++..+++.|.+++-.
T Consensus 1080 A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv 1153 (1666)
T KOG0985|consen 1080 AIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLV 1153 (1666)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHH
Confidence 113457999999999999999999888532 35568999999999999999999
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 457 QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 457 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
.++....++ .-.|.+.+ .|+-+|++.+++.+-++++. -|+..-...+.+-|...|.++.|+-+|.
T Consensus 1154 ~yL~MaRkk-~~E~~id~--eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~-------- 1218 (1666)
T KOG0985|consen 1154 KYLLMARKK-VREPYIDS--ELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS-------- 1218 (1666)
T ss_pred HHHHHHHHh-hcCccchH--HHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------
Confidence 999877664 55666554 68999999999999888764 4777778889999999999999988886
Q ss_pred CchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCccCC
Q 043060 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVP 573 (707)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 573 (707)
+.+.|..|+..+...|.+..|...-++.......|+.
T Consensus 1219 ~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~V 1255 (1666)
T KOG0985|consen 1219 NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEV 1255 (1666)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 3466778888888888888777655554443333333
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-06 Score=89.47 Aligned_cols=414 Identities=11% Similarity=0.058 Sum_probs=199.9
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCC---CCeehHHHHHHHHHhCCChhHHHHHH
Q 043060 143 ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL---RDAVSYTALITGYASRGYLDDARQLF 219 (707)
Q Consensus 143 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 219 (707)
.+++..+++..+.+++ +.+....+.....-.+...|+-++|....+.... ++.++|..+.-.+-...++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 3445555555555544 2222222222222223445555555555543332 24455666655555566666666666
Q ss_pred HhCccccCCCCCC-HhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 043060 220 DEMPIREENFVPN-ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK-- 296 (707)
Q Consensus 220 ~~m~~~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 296 (707)
...+ .+.|| ...+.-+.-.-++.++++.....-....+.. +.....|..++-++.-.|+...|..+.+...+
T Consensus 99 ~nAl----~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 99 RNAL----KIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHH----hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6653 23333 2333333333344455554444444433331 22334455555555555666665555544332
Q ss_pred ---CChhhHHH------HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHH-hHHHHHhccCCchHHHHHHHHHHHhCCC
Q 043060 297 ---RDVISWNV------MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL-SVLPACAYLGALDLGKWIHAYIDKNHQK 366 (707)
Q Consensus 297 ---~~~~~~~~------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (707)
++...+.. .......+|..++|++.+..-... ..|...+. .-...+.+.+++++|..++..++...++
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd 251 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD 251 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch
Confidence 11111111 123344555555555555443221 11222211 1223345556666666666666665554
Q ss_pred CCcHHHHhHHhhHHHhcCCHHHHH-HHHhcCCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 043060 367 LNNVSLWTSLIDMYAKCGNIKAAE-QVFDGMGYK---TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442 (707)
Q Consensus 367 ~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 442 (707)
+...|-.+..++++-.+.-++. .+|...... ....-..=++......-.+..-+.+..+.+.|+++--..+.+
T Consensus 252 --n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~S- 328 (700)
T KOG1156|consen 252 --NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRS- 328 (700)
T ss_pred --hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHH-
Confidence 4444555555554322323333 444433211 000000000000111112333445566666666543323222
Q ss_pred HHHHhccCCHHH----HHHHHHHhHHh---------cCCCCChHHHH--HHHHHHHHcCCHHHHHHHHHhC-CCCCC-HH
Q 043060 443 LSACNHAGLLDI----GRQYFNAMIQD---------YKISPKLQHYG--CMVDLLGRAGLFDEAEALLKTM-EMKPD-AA 505 (707)
Q Consensus 443 l~a~~~~g~~~~----a~~~~~~~~~~---------~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~ 505 (707)
.+-.-...+- +..+...+... ..-+|....|+ .++..|-+.|+++.|...++.. +-.|. ..
T Consensus 329 --Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliE 406 (700)
T KOG1156|consen 329 --LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIE 406 (700)
T ss_pred --HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHH
Confidence 2222111111 11111111100 00134544443 5667778888888888888875 55566 55
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 506 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.|..=...+...|+++.|...++++.+++..|...-.--+.-..++.+.++|.++.....+.|.
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 6666667778888888888888888888866654444566667788888888888777766653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-07 Score=97.42 Aligned_cols=443 Identities=16% Similarity=0.085 Sum_probs=266.2
Q ss_pred CCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCC-Cccc
Q 043060 57 GLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE---PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP-NTYT 132 (707)
Q Consensus 57 ~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t 132 (707)
.+..|..+|..|. -+...+|+++.+.+.|++... .....|+.+-..+...|....|+.+.+.-....-.| |...
T Consensus 318 ~~qnd~ai~d~Lt--~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 318 KFQNDAAIFDHLT--FALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3556788888887 777788888888888887653 344568888888888888888888877655432123 3333
Q ss_pred HHHHHHHHh-ccCChHHHHHHHHHHHHhC--C--CCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHH
Q 043060 133 FPFILKSCA-KISAISEGKQIHAHVLKLG--L--ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA 207 (707)
Q Consensus 133 ~~~ll~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 207 (707)
+-..-+.|. +.+.++++..+-..++... . ...+..|..+.-+|...-. ....+.-
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~--------------~a~~~se------ 455 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR--------------QANLKSE------ 455 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh--------------cCCChHH------
Confidence 333334444 4456666666666665521 0 1112223333333321100 0001100
Q ss_pred hCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHH
Q 043060 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287 (707)
Q Consensus 208 ~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 287 (707)
+.....++++.+++..+. ..-.|+...|.++- ++..++++.|.+...+..+.+-..+...|..|+-.+.-.+++.+|
T Consensus 456 R~~~h~kslqale~av~~-d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 456 RDALHKKSLQALEEAVQF-DPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence 111235677777777532 44455555554443 556678999999999988887677888999999999999999999
Q ss_pred HHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCChhhHHhHHHHHhccCCchHHHHHHHHHHH
Q 043060 288 RDLFESIEKR---DVISWNVMIGGYTHTSDYKEALMLFRQMLQS--NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362 (707)
Q Consensus 288 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 362 (707)
+.+.+...+. |-+.-..-+..-..-++.++|+.....+... ...+-..+.. .|....-..-......
T Consensus 533 l~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~--------~g~~~~lk~~l~la~~ 604 (799)
T KOG4162|consen 533 LDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD--------EGKLLRLKAGLHLALS 604 (799)
T ss_pred HHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh--------hhhhhhhhcccccCcc
Confidence 9888776532 2111112223333467777777776666531 0111111100 0000000000000000
Q ss_pred hCCCCCcHHHHhHHhhHHHh---cCCHHHHHHHHhcCCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 043060 363 NHQKLNNVSLWTSLIDMYAK---CGNIKAAEQVFDGMGYKT------LASWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433 (707)
Q Consensus 363 ~~~~~~~~~~~~~li~~y~~---~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 433 (707)
.... .+.++..+...... .-..+.....+...+.++ ...|......+...+..++|...+.+... +.
T Consensus 605 -q~~~-a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~ 680 (799)
T KOG4162|consen 605 -QPTD-AISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--ID 680 (799)
T ss_pred -cccc-cchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cc
Confidence 0000 12222222222111 111111122222222332 23577777888899999999988888876 44
Q ss_pred CCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHH--HHHhC-CCCCC-HHHH
Q 043060 434 PDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEA--LLKTM-EMKPD-AAIW 507 (707)
Q Consensus 434 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~p~-~~~~ 507 (707)
|-. ..|......+...|..++|.+.|.... -+.| ++...+++..++.+.|+..-|.+ ++..+ .+.|+ ...|
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW 757 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW 757 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence 443 366666677788899999999998876 4455 56788899999999998777777 77776 77776 8999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 043060 508 TSLLGACRVHGRLELGESVAKHLLELEPENPG 539 (707)
Q Consensus 508 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 539 (707)
-.+...+.+.|+.+.|.+.|..++++++.+|.
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999999987764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.8e-07 Score=85.00 Aligned_cols=212 Identities=14% Similarity=0.104 Sum_probs=126.8
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcC---CCCChHHHHHHHHHHHHcCCHHH
Q 043060 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM---GYKTLASWNAMISGLAMHGKADK 419 (707)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~ 419 (707)
.+...|+...++.....+++..+. +...+..-..+|...|++..|+.=++.. ...+.....-+-..+...|+.+.
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~~W--da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQPW--DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcCcc--hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHH
Confidence 344556666666666666665554 7777888888888888888887655543 45566677777777888888888
Q ss_pred HHHHHHHHHHCCCCCCHhH-HH---HH---------HHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHH
Q 043060 420 ALSLFSRMIGEGLQPDDIT-FV---GV---------LSACNHAGLLDIGRQYFNAMIQDYKISPK-----LQHYGCMVDL 481 (707)
Q Consensus 420 A~~~~~~m~~~g~~p~~~t-~~---~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~ 481 (707)
++...++-++ +.||... |. .| +......+.+.++.+..+...+. .|. ...+..+-.+
T Consensus 242 sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 242 SLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTC 316 (504)
T ss_pred HHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeec
Confidence 8888888877 7787652 21 11 11123344555555555554432 222 1122334445
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHH
Q 043060 482 LGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 559 (707)
|...|++.+|+....+. .+.|| +.++.--..+|.....++.|+.-|+++.+.+++|..+-.. .+.|.+
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG----------le~Akr 386 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG----------LERAKR 386 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHH
Confidence 55566666666666654 55555 5566666666666666677777777776666665433222 244555
Q ss_pred HHHHHhhCCCcc
Q 043060 560 IRTRLNDKGMKK 571 (707)
Q Consensus 560 ~~~~m~~~~~~~ 571 (707)
+.++.-+++.-|
T Consensus 387 lkkqs~kRDYYK 398 (504)
T KOG0624|consen 387 LKKQSGKRDYYK 398 (504)
T ss_pred HHHHhccchHHH
Confidence 555554444433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-06 Score=90.09 Aligned_cols=233 Identities=16% Similarity=0.209 Sum_probs=163.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCH
Q 043060 307 GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI 386 (707)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 386 (707)
..+.+.|+++.|+..|-+... ....+.+......+..|..+++.+...... ...|..+.+-|+..|++
T Consensus 714 ~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~~---s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKTA---SGYYGEIADHYANKGDF 781 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhccc---cccchHHHHHhccchhH
Confidence 445556666666666654422 223445556677888888888887766543 33577788899999999
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 043060 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY 466 (707)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 466 (707)
+.|+++|-+.. .++-.|..|.+.|++++|.++-.+... .......|..-..-.-+.|++.+|.+++-.+-
T Consensus 782 e~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~--- 851 (1636)
T KOG3616|consen 782 EIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG--- 851 (1636)
T ss_pred HHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc---
Confidence 99999997653 456678889999999999888766542 33334456666666778899999988876542
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 043060 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544 (707)
Q Consensus 467 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 544 (707)
.|+. -|.+|-+.|..++.+++.++-. || ..|...+..-+...|++..|+..|-++ .-+..-
T Consensus 852 --~p~~-----aiqmydk~~~~ddmirlv~k~h--~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaa 914 (1636)
T KOG3616|consen 852 --EPDK-----AIQMYDKHGLDDDMIRLVEKHH--GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAA 914 (1636)
T ss_pred --CchH-----HHHHHHhhCcchHHHHHHHHhC--hhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHH
Confidence 2553 4678999999999999988753 33 557777888888999999998877654 345566
Q ss_pred HHHhhhcCChhhHHHHHHHHhhCCCccCCcccEE
Q 043060 545 SNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSI 578 (707)
Q Consensus 545 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 578 (707)
.++|-..+.|++|-++-+.--..+..|....-|.
T Consensus 915 vnmyk~s~lw~dayriaktegg~n~~k~v~flwa 948 (1636)
T KOG3616|consen 915 VNMYKASELWEDAYRIAKTEGGANAEKHVAFLWA 948 (1636)
T ss_pred HHHhhhhhhHHHHHHHHhccccccHHHHHHHHHH
Confidence 7889999999999887654333333344444443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-05 Score=83.34 Aligned_cols=124 Identities=20% Similarity=0.232 Sum_probs=68.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL-QHYGCMVDLLGRAGLFDEAEALLKTM-EM-KPDAAIWTSLLGAC 514 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~ 514 (707)
|+.-+...+-+.|+++.|..+++..+ +..|+. +.|-.-..++...|++++|..++++. .+ .||..+-.--..-.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 33445556666777777777777665 334443 45555556667777777777777765 22 24443333444445
Q ss_pred HhcCChhHHHHHHHHHHccCCC---C----chhHHHH--HHHhhhcCChhhHHHHHHHH
Q 043060 515 RVHGRLELGESVAKHLLELEPE---N----PGAYVLL--SNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~p~---~----~~~~~~l--~~~~~~~g~~~~a~~~~~~m 564 (707)
.+.++.++|.+++.+..+-+.+ | .-.|+.+ +.+|.+.|++.+|.+=|..+
T Consensus 450 LrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 5666777777766665554321 0 0122222 45566677766666544433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.8e-06 Score=86.38 Aligned_cols=253 Identities=16% Similarity=0.165 Sum_probs=142.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-hhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHH
Q 043060 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPN-DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381 (707)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 381 (707)
..+...|-..|++++|++.+++.++. .|+ ...|..-...+-+.|++.+|....+........ |..+-+-.+..+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~--DRyiNsK~aKy~L 273 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA--DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh--hHHHHHHHHHHHH
Confidence 45566677777888888887777764 454 335555666777778888887777777777665 7777777788888
Q ss_pred hcCCHHHHHHHHhcCCCCC------hH----HHH--HHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHh----------
Q 043060 382 KCGNIKAAEQVFDGMGYKT------LA----SWN--AMISGLAMHGKADKALSLFSRMIGE--GLQPDDI---------- 437 (707)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~------~~----~~~--~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~---------- 437 (707)
++|++++|.+++......+ .. .|- ....+|.+.|++..|++-|....+. .+.-|..
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 8888888888877664433 11 343 3456788888888888776655441 1222222
Q ss_pred ---HHHHHHHHHhccC-------CHHHHHHHHHHhHHhcCCCC-----------ChHHHHHHHHHH---HHcCCHHHHHH
Q 043060 438 ---TFVGVLSACNHAG-------LLDIGRQYFNAMIQDYKISP-----------KLQHYGCMVDLL---GRAGLFDEAEA 493 (707)
Q Consensus 438 ---t~~~ll~a~~~~g-------~~~~a~~~~~~~~~~~~~~p-----------~~~~~~~li~~~---~~~g~~~~A~~ 493 (707)
+|..++...-+.. -...|.+++-.+........ +..--..+-.-- .+...-+++.+
T Consensus 354 t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~ 433 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEK 433 (517)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2333333221111 11233344333322100000 000000000000 11111111211
Q ss_pred HHHh-----------C----C--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhh
Q 043060 494 LLKT-----------M----E--MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 494 ~~~~-----------~----~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 556 (707)
.-.+ . + ..||+.- ..|+ ....=+++|.+.++-+.+..|++..+|..--.+|.+.|++--
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LL 509 (517)
T PF12569_consen 434 AAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLL 509 (517)
T ss_pred HHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHH
Confidence 1100 0 1 1122211 1111 223347889999999999999999999999999999999998
Q ss_pred HHHHHHH
Q 043060 557 VATIRTR 563 (707)
Q Consensus 557 a~~~~~~ 563 (707)
|.+.+.+
T Consensus 510 aLqaL~k 516 (517)
T PF12569_consen 510 ALQALKK 516 (517)
T ss_pred HHHHHHh
Confidence 8876653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-08 Score=94.14 Aligned_cols=232 Identities=16% Similarity=0.158 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHH-hHHHHHh
Q 043060 269 HVTNALIDMYSKCGDLVKARDLFESIEK--RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL-SVLPACA 345 (707)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~ 345 (707)
---+.+..+|.+.|.+.+|++.|+.-.+ +-+.+|-.|-..|.+..+++.|+.+|.+-.+. .|-.+||. .+.+.+.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 3347789999999999999999988764 57789999999999999999999999998764 56666653 2333444
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 043060 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFS 425 (707)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 425 (707)
..++.+.+.++++.+.+.... ++. +..++..+|.-.++++-|+..|+
T Consensus 302 am~~~~~a~~lYk~vlk~~~~--nvE-------------------------------aiAcia~~yfY~~~PE~AlryYR 348 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPI--NVE-------------------------------AIACIAVGYFYDNNPEMALRYYR 348 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCc--cce-------------------------------eeeeeeeccccCCChHHHHHHHH
Confidence 445555555555555554433 333 33344445555556666666666
Q ss_pred HHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 043060 426 RMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK--LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP 502 (707)
Q Consensus 426 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 502 (707)
++++.|+. +...|..+.-+|.-.+++|-++.-|++...- --.|+ ...|-.+.......|++.-|.+-|+-. ...|
T Consensus 349 RiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 349 RILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 66665543 3334555555566666666666655555432 22232 244555555666667777777766654 3334
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 043060 503 D-AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 503 ~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 537 (707)
+ ...++.|.-.-.+.|+++.|..++..+....|.-
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 4 6677777777777777777777777777766653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.2e-07 Score=90.80 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=48.5
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhh
Q 043060 479 VDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 556 (707)
.+.+.+.|++.+|++.+.++ ...|+ ...|.....+|.+.|++..|..-.+..++++|+....|..-+.++....+|++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555554 23343 55555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhhC
Q 043060 557 VATIRTRLNDK 567 (707)
Q Consensus 557 a~~~~~~m~~~ 567 (707)
|.+.|.+..+.
T Consensus 445 Aleay~eale~ 455 (539)
T KOG0548|consen 445 ALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHhc
Confidence 55555555443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.2e-07 Score=91.32 Aligned_cols=163 Identities=17% Similarity=0.171 Sum_probs=104.6
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 448 (707)
+..+......+|...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+ ...|. +...+..++..
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~ 175 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHH
Confidence 3333444455677789999998888765 5666677778888999999999999999987 44443 34444444332
Q ss_pred ----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCh-h
Q 043060 449 ----AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRL-E 521 (707)
Q Consensus 449 ----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~-~ 521 (707)
.+.+.+|..+|+++.. ...+++.+.+.+..++...|++++|.+++++. ...|+ +.++..++......|+. +
T Consensus 176 l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred HHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence 2357777777777765 34456666777777777777777777777663 44444 55666666666666666 5
Q ss_pred HHHHHHHHHHccCCCCc
Q 043060 522 LGESVAKHLLELEPENP 538 (707)
Q Consensus 522 ~A~~~~~~~~~~~p~~~ 538 (707)
.+.+...++....|+++
T Consensus 254 ~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 254 AAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHhCCCCh
Confidence 56666666666666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.7e-06 Score=88.31 Aligned_cols=406 Identities=13% Similarity=0.113 Sum_probs=243.4
Q ss_pred CchhhhhhhchhhcccCCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHHC-C--------CCCCc
Q 043060 60 NTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILS-G--------FVPNT 130 (707)
Q Consensus 60 ~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~ 130 (707)
.|..+-.+++.-++|..-|+.+.|.+-...++ +-..|..|.+.+++.++.+-|.-.+..|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 47778888887788999999999988777765 4457999999999999998888777766431 1 1222
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCC-CeehHHHHHHHHHhC
Q 043060 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DAVSYTALITGYASR 209 (707)
Q Consensus 131 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~ 209 (707)
.+=..+.-.....|.+++|+.++.+-.+. ..|=..|-..|.+++|.++-+.-..- =..||.....-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 33333333345789999999999987764 34556677889999998887543211 123566666667778
Q ss_pred CChhHHHHHHHhCcccc-------CCCC----------CCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHH
Q 043060 210 GYLDDARQLFDEMPIRE-------ENFV----------PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN 272 (707)
Q Consensus 210 g~~~~A~~l~~~m~~~~-------~~~~----------p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 272 (707)
++.+.|++.|++..... ...+ -|...|..-..-.-..|+.+.|..++....+ |-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 88999998888752100 0000 1111122222222234455555544444332 33
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCc--
Q 043060 273 ALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL-- 350 (707)
Q Consensus 273 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-- 350 (707)
+++...|-.|+.++|-++-++ ..|..+...+...|-..|++.+|...|.+.+. |...|+.|-..+.-
T Consensus 943 s~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDR 1011 (1416)
T ss_pred hheeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHH
Confidence 455555556666666666554 23566677788888888999999888877643 33444433222211
Q ss_pred -------------hHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC--------------CCChHH
Q 043060 351 -------------DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG--------------YKTLAS 403 (707)
Q Consensus 351 -------------~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------------~~~~~~ 403 (707)
-.|-.+|+ +.|.. ..--+..|-+.|.+.+|+++-=+-. ..|+..
T Consensus 1012 L~nlal~s~~~d~v~aArYyE---e~g~~------~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYE---ELGGY------AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHH---Hcchh------hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 11111221 12211 2234566778888777776532221 235556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh----HHHHHHH
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL----QHYGCMV 479 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li 479 (707)
.+--..-+..+.++++|..++-..++ |...+..|...+ +.-..++-+.|.-...-.|+. .....+.
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqva 1152 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVA 1152 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHH
Confidence 66666677788888888888876655 444555554433 222333333333222222333 3456677
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 043060 480 DLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 522 (707)
+.+.++|.+..|-+-|.+.+.+ ..-+.++.+.||.++
T Consensus 1153 e~c~qQG~Yh~AtKKfTQAGdK------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1153 ELCLQQGAYHAATKKFTQAGDK------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHhccchHHHHHHHhhhhhH------HHHHHHHHhcCCcce
Confidence 8899999999999999887633 223455566776553
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.6e-08 Score=97.94 Aligned_cols=218 Identities=16% Similarity=0.151 Sum_probs=171.6
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHH
Q 043060 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKAL 421 (707)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 421 (707)
.+.|++..|.-.|+..++..+. +...|.-|...-...++-..|+..+++.. ..|....-.|...|...|.-.+|+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 4567777777777777777776 77888888888888888778887777653 346677777888888888888899
Q ss_pred HHHHHHHHCCCCCCHhHHHHH--------HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 043060 422 SLFSRMIGEGLQPDDITFVGV--------LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493 (707)
Q Consensus 422 ~~~~~m~~~g~~p~~~t~~~l--------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 493 (707)
..++.-+.. +|...-...- -........+....++|-++....+..+|...+.+|.-+|.-.|.++.|.+
T Consensus 374 ~~L~~Wi~~--~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRN--KPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHh--CccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 888887663 2211100000 011222334556667777777766766899999999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 494 LLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 494 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
-|+.+ .++|+ ..+||-|...++...+.++|+..|.+++++.|.-..+.+.|+-.|...|.++||.+.|-....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99986 77886 889999999999999999999999999999999999999999999999999999999877654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.5e-07 Score=82.14 Aligned_cols=192 Identities=15% Similarity=0.096 Sum_probs=117.9
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhc
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMGYK---TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNH 448 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~ 448 (707)
...|.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+.|++..+ +.|+.- ..|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHh
Confidence 444555666666766666666665432 334666666666667777777777776666 455443 45555555566
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 043060 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESV 526 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~ 526 (707)
.|.+++|.+.|+....+....--..+|..++-+-.++|+++.|.+.|++. ...|+ ..+...+.....+.|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 66777777777666655333333455666666666677777777766664 44454 55566666666667777777776
Q ss_pred HHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 527 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
++......+.+.......+.+-...|+-+.+.++=.++..
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666665555555666666666666666666665554443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=7e-05 Score=88.21 Aligned_cols=196 Identities=14% Similarity=0.092 Sum_probs=105.4
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC--Hh
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMGY-------K----TLASWNAMISGLAMHGKADKALSLFSRMIGEG--LQPD--DI 437 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~ 437 (707)
...+...+...|++++|...+++... . ....+..+...+...|++++|...+++..... ..+. ..
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 34445555666666666665554311 0 11223344445555677777777766654421 1121 12
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH-----HHHHHHHHHcCCHHHHHHHHHhCCCC--CCH----HH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY-----GCMVDLLGRAGLFDEAEALLKTMEMK--PDA----AI 506 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--p~~----~~ 506 (707)
.+..+.......|+.++|.+.+..+............+ ......+...|+.++|.+.+...... ... ..
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 33334445566777777777766654321111111111 01123345567777777777664211 111 12
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccC------CCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 507 WTSLLGACRVHGRLELGESVAKHLLELE------PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 507 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
+..+..++...|+.++|...++++++.. +....++..++.+|.+.|+.++|.+.+.+..+..
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3455666777788888888777777642 1122356677777888888888888877776543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-06 Score=78.73 Aligned_cols=417 Identities=13% Similarity=0.074 Sum_probs=243.1
Q ss_pred CCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCC--CeehHHH
Q 043060 124 SGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR--DAVSYTA 201 (707)
Q Consensus 124 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~ 201 (707)
.|+..-.--+.+++..+.+..++..|.+++..-.++. +.+....+.|...|....++..|-..++++... ...-|..
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 3444444557777877888888888888888766653 235556677777888888888888888877532 2222221
Q ss_pred -HHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHH--hccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 043060 202 -LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC--AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMY 278 (707)
Q Consensus 202 -li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 278 (707)
-...+.+.+.+..|+.+...|.. . |+...-..-+.+. -+.+++..+..+.++.-.. .+..+.+......
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D--~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCll 154 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLD--N---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLL 154 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcC--C---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchhee
Confidence 24566678888889988888842 1 3322222222222 2456677777666654422 2455556666667
Q ss_pred HhcCCHHHHHHHHHhcCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHH-hHHHHHhccCCchHH
Q 043060 279 SKCGDLVKARDLFESIEKR----DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL-SVLPACAYLGALDLG 353 (707)
Q Consensus 279 ~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a 353 (707)
.+.|+++.|.+-|+...+- ...+||..+..| +.|+++.|+++..+..+.|++..+..=. ....+- ....+..-
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi-DvrsvgNt 232 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGI-DVRSVGNT 232 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC-chhcccch
Confidence 7888888888888876652 455676655444 5677888888888888887653222100 000000 00000111
Q ss_pred HHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043060 354 KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-----TLASWNAMISGLAMHGKADKALSLFSRMI 428 (707)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 428 (707)
..++... -+..+|.-...+.+.|+.+.|.+.+-.|+.+ |+++...+.-.- ..+++.+..+-+.-+.
T Consensus 233 ~~lh~Sa--------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL 303 (459)
T KOG4340|consen 233 LVLHQSA--------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLL 303 (459)
T ss_pred HHHHHHH--------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHH
Confidence 1111111 1234455556678899999999999999865 677765553222 2455666666666666
Q ss_pred HCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHHH-cCCHHHHHHHHHhCCCCCCHH
Q 043060 429 GEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI-SPKLQHYGCMVDLLGR-AGLFDEAEALLKTMEMKPDAA 505 (707)
Q Consensus 429 ~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~p~~~ 505 (707)
+ +.|- ..||..++-.|++..-++.|-.++.+-... -. -.+...|+ |++++.- .-..++|.+-++.+...--..
T Consensus 304 ~--~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~k 379 (459)
T KOG4340|consen 304 Q--QNPFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEK 379 (459)
T ss_pred h--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 6 3443 459999999999999999988887643110 00 01222333 3344433 345677776665541000000
Q ss_pred HHHHHHHHH-HhcCC----hhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 506 IWTSLLGAC-RVHGR----LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 506 ~~~~ll~~~-~~~g~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
.-..-+..- .++.+ +..+.+-+++.+++.- .+....++.|.+..++.-+.++|..-.+-
T Consensus 380 LRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 380 LRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 001111111 11121 2334455566666542 25667788899999999999999876653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.2e-06 Score=87.85 Aligned_cols=373 Identities=15% Similarity=0.073 Sum_probs=198.5
Q ss_pred HHHHHHHHHhCCCCch-hhhhhhchhhcccCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHH
Q 043060 47 KQVHSQIIKTGLHNTQ-FALSKLIEICAVSPFGDLSYALLVFETIRE---PNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122 (707)
Q Consensus 47 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 122 (707)
..++..+....+.++. ..|..|- ..|....+...|.+.|+..-+ .|..+|......|++..++++|..+.-..-
T Consensus 476 ~al~ali~alrld~~~apaf~~LG--~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLG--QIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 3444444444444433 3456666 777777788889999988765 466788899999999999999999843322
Q ss_pred HCC-CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHH
Q 043060 123 LSG-FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTA 201 (707)
Q Consensus 123 ~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 201 (707)
+.. ...-...|..+--.+...++...+..-|+...+.. +-|...|..|..+|..+|++..|.++|.+...-++.+|-.
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 211 00011223333334556778888888888877765 4567789999999999999999999998776554443322
Q ss_pred ---HHHHHHhCCChhHHHHHHHhCccccC----CCCCCHhhHHHHHHHHhccCC-------chHHHHHHHHHHHc-----
Q 043060 202 ---LITGYASRGYLDDARQLFDEMPIREE----NFVPNESTVVTVLSACAHMGS-------LELGNWVCSLIEGH----- 262 (707)
Q Consensus 202 ---li~~~~~~g~~~~A~~l~~~m~~~~~----~~~p~~~t~~~ll~~~~~~g~-------~~~a~~~~~~~~~~----- 262 (707)
....-+..|.+.+|+..+........ +..--..++..+...+...|- ++.+.+.+.-....
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 12334456777777777666532110 111111111111111111111 11111111111100
Q ss_pred ---------------CCCch---hHHHHHHHHHHHhcCCH---H---HHHHHHHhcCC--CChhhHHHHHHHHHh-----
Q 043060 263 ---------------GLGSN---LHVTNALIDMYSKCGDL---V---KARDLFESIEK--RDVISWNVMIGGYTH----- 311 (707)
Q Consensus 263 ---------------g~~~~---~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~--~~~~~~~~li~~~~~----- 311 (707)
-+.|+ ......|..-.-+.+.. + -+.+.+-.-.+ .+..+|..++..|.+
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHc
Confidence 01233 33333333222222222 1 12222221111 235566666555443
Q ss_pred ---cCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHH
Q 043060 312 ---TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388 (707)
Q Consensus 312 ---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 388 (707)
..+...|+.-+.+..+.. .-+..+|+. +......|++.-+. |..+...-..+....+|..+.-.+.+..+++.
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~-ann~~~Wna-LGVlsg~gnva~aQ--HCfIks~~sep~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLC-ANNEGLWNA-LGVLSGIGNVACAQ--HCFIKSRFSEPTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHh-hccHHHHHH-HHHhhccchhhhhh--hhhhhhhhccccchhheeccceeEEecccHHH
Confidence 122245777777766532 223344443 33344445544443 44444433333367777778878888888888
Q ss_pred HHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043060 389 AEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSR 426 (707)
Q Consensus 389 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (707)
|...|..... .|...|-.........|+.-+++.+|..
T Consensus 869 A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 869 AEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 8888877643 2455665555555555655556555554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.2e-06 Score=89.24 Aligned_cols=125 Identities=18% Similarity=0.180 Sum_probs=81.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGAC 514 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 514 (707)
++..+...|...|++++|.++++..++ ..| .+..|..-...|-+.|++++|.+.++.. ...+ |-.+-+-....+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 344455566777888888888877765 234 3567777777788888888887777775 2332 445555566667
Q ss_pred HhcCChhHHHHHHHHHHccC--CCC-c----hhH--HHHHHHhhhcCChhhHHHHHHHHh
Q 043060 515 RVHGRLELGESVAKHLLELE--PEN-P----GAY--VLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~--p~~-~----~~~--~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
.+.|++++|.+++......+ |.. . -.| ..-+.+|.+.|++..|.+.|..+.
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77788888887777665544 211 0 122 345677888888888877666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.1e-05 Score=81.27 Aligned_cols=463 Identities=13% Similarity=0.128 Sum_probs=258.1
Q ss_pred hHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHH
Q 043060 43 MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMI 122 (707)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 122 (707)
+.......+..++.|. .|+.++|+|. +.|...++-.+ +.+.+-+ .-=+..+.-|+..+++.-|.-.|++-.
T Consensus 854 LklLlp~LE~~i~eG~-~d~a~hnAla--KIyIDSNNnPE--~fLkeN~----yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 854 LKLLLPWLESLIQEGS-QDPATHNALA--KIYIDSNNNPE--RFLKENP----YYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHHHHHHHHHhccC-cchHHHhhhh--heeecCCCChH--HhcccCC----cchhhHHhhhhcccCCceEEEeecccC
Confidence 4444455555666675 4889999999 88887665432 2222221 111223444555555544433332211
Q ss_pred HC----CC----------------CCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCC
Q 043060 123 LS----GF----------------VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLE--SDPFVHTSLINMYAQNGE 180 (707)
Q Consensus 123 ~~----g~----------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~ 180 (707)
.. .+ +.|...|..++. ..-.--+++.++.+..+++ .|+.-.+.-+.++...+-
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~-----e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadL 999 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLN-----EENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADL 999 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHh-----ccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCC
Confidence 00 00 123333333332 1112234566666666653 355566667777777787
Q ss_pred hhHHHHHHhcCCC-CCee-----hHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHH
Q 043060 181 LESARLVFNKSSL-RDAV-----SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNW 254 (707)
Q Consensus 181 ~~~A~~~f~~~~~-~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 254 (707)
..+-.++++++.- +++. .-|.||-...+ -+..+..+..+++ .+... -.+...+...+-+++|..
T Consensus 1000 p~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rL----dnyDa-----~~ia~iai~~~LyEEAF~ 1069 (1666)
T KOG0985|consen 1000 PNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRL----DNYDA-----PDIAEIAIENQLYEEAFA 1069 (1666)
T ss_pred cHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHh----ccCCc-----hhHHHHHhhhhHHHHHHH
Confidence 8888888877652 2222 23333333333 3445666666665 22111 122333445555666766
Q ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh
Q 043060 255 VCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334 (707)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 334 (707)
+|+.. ..+....+.|++ ..+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+. .|+
T Consensus 1070 ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDp 1133 (1666)
T KOG0985|consen 1070 IFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDP 1133 (1666)
T ss_pred HHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCc
Confidence 66543 334444444443 345677777777666554 56888888888888888888877553 355
Q ss_pred hhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC----------------
Q 043060 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---------------- 398 (707)
Q Consensus 335 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------------- 398 (707)
..|.-++..+.+.|.++.-...+..+.+...++ .+-+.|+-+|++.+++.+-++++..-..
T Consensus 1134 s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~---~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y 1210 (1666)
T KOG0985|consen 1134 SNYLEVIDVASRTGKYEDLVKYLLMARKKVREP---YIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMY 1210 (1666)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc---cchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhh
Confidence 678888888888888888888777777665543 3456788888888888777766542110
Q ss_pred -------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 043060 399 -------KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK 471 (707)
Q Consensus 399 -------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 471 (707)
.++.-|.-+...+...|++..|...-++. .+..||..+-.+|...+.+.-|. |.. .++...
T Consensus 1211 ~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivh 1278 (1666)
T KOG0985|consen 1211 EAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVH 1278 (1666)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEe
Confidence 02334555556666666666665554432 23446666666776665554432 111 122223
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 472 LQHYGCMVDLLGRAGLFDEAEALLKTM-EMK-PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
..-..-|+..|-..|-++|-+.+++.. +.+ .....|.-|.-.|.+-+ +++-.+.++-.... ...--++.++.
T Consensus 1279 adeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsR-----vNipKviRA~e 1352 (1666)
T KOG0985|consen 1279 ADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSR-----VNIPKVIRAAE 1352 (1666)
T ss_pred hHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh-----cchHHHHHHHH
Confidence 444556778888888888888888764 544 23455655555555543 44444433333221 01123556666
Q ss_pred hcCChhhHHHHHHHHhh
Q 043060 550 GAGRWDDVATIRTRLND 566 (707)
Q Consensus 550 ~~g~~~~a~~~~~~m~~ 566 (707)
++..|.|..=++.+-.+
T Consensus 1353 qahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1353 QAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 77777777666655443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00015 Score=74.28 Aligned_cols=412 Identities=12% Similarity=0.068 Sum_probs=243.9
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHH--hCCChhH
Q 043060 137 LKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYA--SRGYLDD 214 (707)
Q Consensus 137 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~--~~g~~~~ 214 (707)
++.+...+++++|.+....++..+ +.|...+..=+-+..+.+++++|+.+.+.-...+....-.+=.+|| +.+..++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 344567889999999999998876 5566667777777889999999997776544221111111234444 6889999
Q ss_pred HHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043060 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGS-NLHVTNALIDMYSKCGDLVKARDLFES 293 (707)
Q Consensus 215 A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 293 (707)
|+..++-... .|..+...-...|-+.|++++|..+|..+.+++.+. +...-..++..-. .-.+. +.+.
T Consensus 98 alk~~~~~~~------~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~ 166 (652)
T KOG2376|consen 98 ALKTLKGLDR------LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQS 166 (652)
T ss_pred HHHHHhcccc------cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHh
Confidence 9999884421 123355566677889999999999999999886432 2222222322211 11121 3444
Q ss_pred cCCCChhhHHHH---HHHHHhcCCHHHHHHHHHHHhhcC-------------CCCChhhH-HhHHHHHhccCCchHHHHH
Q 043060 294 IEKRDVISWNVM---IGGYTHTSDYKEALMLFRQMLQSN-------------IEPNDVTF-LSVLPACAYLGALDLGKWI 356 (707)
Q Consensus 294 ~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~t~-~~ll~~~~~~~~~~~a~~~ 356 (707)
.+.....+|..+ ...+...|++.+|++++....+.+ +.-+..+. ..+.-.+-..|+-+++.++
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 444333344433 456778999999999999983211 11111111 1223345678999999999
Q ss_pred HHHHHHhCCCC-C-cHHHHhHHhhHHHhcCCHH-HHHHHHhcCCCCChH--------------HH-HHHHHHHHHcCCHH
Q 043060 357 HAYIDKNHQKL-N-NVSLWTSLIDMYAKCGNIK-AAEQVFDGMGYKTLA--------------SW-NAMISGLAMHGKAD 418 (707)
Q Consensus 357 ~~~~~~~~~~~-~-~~~~~~~li~~y~~~g~~~-~A~~~~~~~~~~~~~--------------~~-~~li~~~~~~g~~~ 418 (707)
+..+++..+.. | -...-|.|+.+-....-++ .++..++........ .. +.++..| .+..+
T Consensus 247 y~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~ 324 (652)
T KOG2376|consen 247 YVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMD 324 (652)
T ss_pred HHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHH
Confidence 99999877652 1 1123344443322211111 233334333222111 11 1222222 22233
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhc--cCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHH
Q 043060 419 KALSLFSRMIGEGLQPDDITFVGVLSACNH--AGLLDIGRQYFNAMIQDYKISPK-LQHYGCMVDLLGRAGLFDEAEALL 495 (707)
Q Consensus 419 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 495 (707)
.+.++..... +..|.. .+..++..+.+ ......+.+++....+ +.+-. ....-.++......|+++.|.+++
T Consensus 325 q~r~~~a~lp--~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 325 QVRELSASLP--GMSPES-LFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHhCC--ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3333333222 133433 34444444432 2256777777777655 33222 445566778888999999999999
Q ss_pred H--------hC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcc----CC---CCchhHHHHHHHhhhcCChhhHHH
Q 043060 496 K--------TM-EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL----EP---ENPGAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 496 ~--------~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~p---~~~~~~~~l~~~~~~~g~~~~a~~ 559 (707)
. .+ .+.-.+.+..++...+.+.++.+.|..++.+++.- .+ .-...+..++..-.+.|+-++|..
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 8 33 23333566677788888888888888888887752 12 222345556666777899999999
Q ss_pred HHHHHhhC
Q 043060 560 IRTRLNDK 567 (707)
Q Consensus 560 ~~~~m~~~ 567 (707)
+++++.+.
T Consensus 480 ~leel~k~ 487 (652)
T KOG2376|consen 480 LLEELVKF 487 (652)
T ss_pred HHHHHHHh
Confidence 99999874
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-05 Score=83.15 Aligned_cols=294 Identities=13% Similarity=0.004 Sum_probs=160.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChh---hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-hhHHhHHH
Q 043060 270 VTNALIDMYSKCGDLVKARDLFESIEK---RDVI---SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND-VTFLSVLP 342 (707)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 342 (707)
.+..+...|...|+.+.+.+.+....+ .+.. ........+...|++++|.+.+++..+.. |+. ..+.. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~-~~ 84 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-hH
Confidence 344444455555555554444443321 1111 12222334556777777777777766642 322 22221 11
Q ss_pred HHh----ccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcC
Q 043060 343 ACA----YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHG 415 (707)
Q Consensus 343 ~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 415 (707)
.+. ..+..+.+.+..... ....+........+...+...|++++|.+.+++.. ..+...+..+...|...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 111 223344444443331 11112133444556667778888888888887663 334566777777888888
Q ss_pred CHHHHHHHHHHHHHCCC-CCCH--hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH-H--HHHHHHHHcCCHH
Q 043060 416 KADKALSLFSRMIGEGL-QPDD--ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHY-G--CMVDLLGRAGLFD 489 (707)
Q Consensus 416 ~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~ 489 (707)
++++|+..+++...... .|+. ..+..+...+...|++++|..+++.........+..... + .++..+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 88888888887776321 1222 134456677778888888888888764321111222111 1 2233333444332
Q ss_pred HHHHH---HHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHccC-C--------CCchhHHHHHHHhhhcCC
Q 043060 490 EAEAL---LKTM-EMKP---DAAIWTSLLGACRVHGRLELGESVAKHLLELE-P--------ENPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 490 ~A~~~---~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~ 553 (707)
.+.+. .... +..| ..........++...|+.+.|...++.+.... . .........+.++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 22222 1111 1101 12223356667788899999999888876532 1 134455677788899999
Q ss_pred hhhHHHHHHHHhhCC
Q 043060 554 WDDVATIRTRLNDKG 568 (707)
Q Consensus 554 ~~~a~~~~~~m~~~~ 568 (707)
+++|.+.+......+
T Consensus 323 ~~~A~~~L~~al~~a 337 (355)
T cd05804 323 YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.2e-07 Score=90.13 Aligned_cols=190 Identities=12% Similarity=0.106 Sum_probs=130.0
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCC-CC---ChHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG-YK---TLASWNA-MISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 443 (707)
.......+...+...++-+.+..-+++.. .. +-.++.. ....+...|++++|++++++- .+.......+
T Consensus 65 ~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~V 138 (290)
T PF04733_consen 65 ELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAV 138 (290)
T ss_dssp CCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHH
T ss_pred hHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHH
Confidence 34444444433333344555555554432 22 1122222 223455679999999988642 3445666778
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH----HHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 043060 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL----LGRAGLFDEAEALLKTM--EMKPDAAIWTSLLGACRVH 517 (707)
Q Consensus 444 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~----~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~ 517 (707)
..+.+.++++.|.+.++.|.+ +..|. +...+..+ +.-.+.+.+|..+|+++ ...+++.+.+.+..+....
T Consensus 139 qi~L~~~R~dlA~k~l~~~~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~ 214 (290)
T PF04733_consen 139 QILLKMNRPDLAEKELKNMQQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL 214 (290)
T ss_dssp HHHHHTT-HHHHHHHHHHHHC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 899999999999999999964 33443 33334433 33344799999999998 3346788899999999999
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCCh-hhHHHHHHHHhhCC
Q 043060 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW-DDVATIRTRLNDKG 568 (707)
Q Consensus 518 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~~ 568 (707)
|++++|+++++++++.+|.++.+...++.+....|+. +.+.+++.++....
T Consensus 215 ~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 215 GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999 66778888877643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.3e-05 Score=80.38 Aligned_cols=178 Identities=18% Similarity=0.236 Sum_probs=98.6
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD--ITFVGVLSAC 446 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~ 446 (707)
....|-+-..-.-+.|++.+|++++-.+..|+. .|..|-++|..++.+++..+- .|+. .|-..+..-+
T Consensus 823 t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~ 892 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKEL 892 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHH
Confidence 333444444455566777777777766666653 255666777777776666543 3332 2555556666
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-C--C-HHHHHH------HHHHHHh
Q 043060 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMK-P--D-AAIWTS------LLGACRV 516 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p--~-~~~~~~------ll~~~~~ 516 (707)
...|++..|..-|-+.- -|.+-+++|-..+.+++|.++-+.-+-. . . ...|.- -+..+.+
T Consensus 893 e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk 962 (1636)
T KOG3616|consen 893 EAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNK 962 (1636)
T ss_pred HhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHh
Confidence 66777777776665442 2455666777777777777766654211 0 0 122221 1122333
Q ss_pred cCChhHHHH-------------HHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 517 HGRLELGES-------------VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 517 ~g~~~~A~~-------------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
+|-++.|.. +.+-..+ ..-+.++..++-.+...|++++|.+-+-+..+.+
T Consensus 963 ~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 963 HGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 444444333 3222222 2234566777777788888888877776665544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.7e-07 Score=98.60 Aligned_cols=208 Identities=15% Similarity=0.184 Sum_probs=176.9
Q ss_pred HHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043060 356 IHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK--------TLASWNAMISGLAMHGKADKALSLFSRM 427 (707)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m 427 (707)
=|.+.+...+. +...|-..|......+++++|++++++.... -...|.++++.-...|.-+...++|+++
T Consensus 1446 DferlvrssPN--SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1446 DFERLVRSSPN--SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHhcCCC--cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 34455555554 6778888899999999999999999987421 3358999999888899889999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---C
Q 043060 428 IGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP---D 503 (707)
Q Consensus 428 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~ 503 (707)
.+ .--....|..|...|.+.+.+++|-++++.|.++++ .....|...++.+.++.+-++|..++.+. ..-| .
T Consensus 1524 cq--ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1524 CQ--YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HH--hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 88 333345789999999999999999999999999776 56778999999999999999999999885 3333 3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 504 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.....-.+..-.+.|+.+.+..+|+..+.-.|.....|..++++-.+.|..+.++.+|+++...++
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 556666777778999999999999999999999999999999999999999999999999998877
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-06 Score=84.45 Aligned_cols=180 Identities=13% Similarity=0.066 Sum_probs=116.5
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCC--C-Ch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh----H
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY--K-TL---ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI----T 438 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 438 (707)
....+..++..|.+.|++++|...|+++.. | +. ..|..+..++.+.|++++|+..|+++.+ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 556666777777777888888777776532 1 21 3566677777777788888888887776 344332 3
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 043060 439 FVGVLSACNHA--------GLLDIGRQYFNAMIQDYKISPKL-QHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS 509 (707)
Q Consensus 439 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 509 (707)
+..+..++... |+.++|.+.|+.+.+.+ |+. ..+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 34444444443 56677777777766532 222 222111111 0000000 011225
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 510 LLGACRVHGRLELGESVAKHLLELEPEN---PGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 510 ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
+...+...|+++.|...++++++..|++ +.++..++.+|.+.|++++|..+++.+..+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5667889999999999999999987654 4789999999999999999999999887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00038 Score=73.80 Aligned_cols=205 Identities=15% Similarity=0.122 Sum_probs=144.9
Q ss_pred CchhhhhhhchhhcccCCCChHHHHHHHhcCCC-----------CCc-chHHHHHHHHHcCCCchHHHHHHHHHHHCCCC
Q 043060 60 NTQFALSKLIEICAVSPFGDLSYALLVFETIRE-----------PNQ-VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV 127 (707)
Q Consensus 60 ~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~-----------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 127 (707)
.+..+|..+. +++.+..+++-|.-.+-.|.+ .|. ..=..+.-.-.+.|..++|+.+|++-.+.
T Consensus 755 kS~~vW~nmA--~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~--- 829 (1416)
T KOG3617|consen 755 KSDSVWDNMA--SMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY--- 829 (1416)
T ss_pred hhhHHHHHHH--HHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---
Confidence 3567899999 999999999988888877753 111 11111111224668899999999988763
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCC--------------
Q 043060 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL-------------- 193 (707)
Q Consensus 128 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-------------- 193 (707)
..|=+.|-..|.+++|.++-+.--+..+. .+|.....-+-..++.+.|++.|++...
T Consensus 830 ------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~ 900 (1416)
T KOG3617|consen 830 ------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPK 900 (1416)
T ss_pred ------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChH
Confidence 33445566789999999887653322222 3455555555667888888888875532
Q ss_pred ---------CCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCC
Q 043060 194 ---------RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGL 264 (707)
Q Consensus 194 ---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 264 (707)
+|...|.-....+-..|+.+.|+.+|.... -|-++++..+-.|+.++|-++-++
T Consensus 901 ~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----------D~fs~VrI~C~qGk~~kAa~iA~e------ 963 (1416)
T KOG3617|consen 901 QIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----------DYFSMVRIKCIQGKTDKAARIAEE------ 963 (1416)
T ss_pred HHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----------hhhhheeeEeeccCchHHHHHHHh------
Confidence 244455555555566899999999998873 267778888889999999888765
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043060 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIE 295 (707)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 295 (707)
..|....--|.++|-..|++.+|..+|-+..
T Consensus 964 sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 964 SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3466777789999999999999999998754
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-06 Score=80.24 Aligned_cols=148 Identities=11% Similarity=0.137 Sum_probs=115.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 043060 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487 (707)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 487 (707)
+..|...|+++.+....+++.. |. ..+...++.+++...++...+ .-+.+...|..|...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3457777887776444433221 11 012235667777777777765 445688899999999999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHH-HhcCC--hhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHH
Q 043060 488 FDEAEALLKTM-EMKPD-AAIWTSLLGAC-RVHGR--LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562 (707)
Q Consensus 488 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 562 (707)
+++|...+++. ...|+ ...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999986 56675 78888888864 67777 5999999999999999999999999999999999999999999
Q ss_pred HHhhCCC
Q 043060 563 RLNDKGM 569 (707)
Q Consensus 563 ~m~~~~~ 569 (707)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9987654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.4e-07 Score=78.96 Aligned_cols=122 Identities=7% Similarity=0.003 Sum_probs=79.0
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 043060 422 SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EM 500 (707)
Q Consensus 422 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 500 (707)
.+|++.++ +.|+. +..+..++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44555555 44553 33445566667777777777776654 23335566667777777777777777777765 44
Q ss_pred CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 501 KPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 501 ~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
.|+ ...|..+..++...|+.++|+..++++++..|+++..+...+++..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 453 6677777777777777777777777777777777777666655543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.1e-05 Score=83.63 Aligned_cols=458 Identities=15% Similarity=0.057 Sum_probs=231.3
Q ss_pred hHHHHHHHhcCCCCCc---chHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHH
Q 043060 80 LSYALLVFETIREPNQ---VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHV 156 (707)
Q Consensus 80 ~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 156 (707)
...|...|-+..+.|+ ..|..|...|...-+...|...|....+.. ..|..........++...+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 4455555544433332 357777777777667778888888777653 335566777778888888888888773222
Q ss_pred HHhCC-CCChhHHHHHHHHHHhCCChhHHHHHHhcCC---CCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCC
Q 043060 157 LKLGL-ESDPFVHTSLINMYAQNGELESARLVFNKSS---LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN 232 (707)
Q Consensus 157 ~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~ 232 (707)
-+... ..-..-|..+.-.|.+.++...|..-|+... ..|...|..+..+|...|++..|+++|.+. .-+.|+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA----s~LrP~ 628 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKA----SLLRPL 628 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhh----HhcCcH
Confidence 21110 0111223334445667788888888887543 447888999999999999999999999887 445665
Q ss_pred HhhHHHHHH--HHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHh-------cCCHHHHHHHHHhcCC-------
Q 043060 233 ESTVVTVLS--ACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK-------CGDLVKARDLFESIEK------- 296 (707)
Q Consensus 233 ~~t~~~ll~--~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~~~A~~~~~~~~~------- 296 (707)
. +|..... .-+..|.+.++...++.+...- .......+.|...+.+ .|-...|...|+.-.+
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 3 2332222 2356788888888888776531 1112222333333332 2333333333332211
Q ss_pred ----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCc---h---HHHHHHHHHHHhCCC
Q 043060 297 ----RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL---D---LGKWIHAYIDKNHQK 366 (707)
Q Consensus 297 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~ 366 (707)
.+...|-.+- .|..+|-+.. .. .|+......+..-.-..+.. | .|.+.+-.-.+ ..
T Consensus 707 h~~~~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~ 772 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LA 772 (1238)
T ss_pred HhhhhhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hh
Confidence 1222222222 2223333322 00 12211111111112222221 1 01111111011 11
Q ss_pred CCcHHHHhHHhhHHHh----cC----CHHHHHHHHhcC---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-
Q 043060 367 LNNVSLWTSLIDMYAK----CG----NIKAAEQVFDGM---GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP- 434 (707)
Q Consensus 367 ~~~~~~~~~li~~y~~----~g----~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 434 (707)
. +...|..|+.-|.+ +| +...|...+.+. ...+...||.|.-. ...|.+.-|...|-+-.. ..|
T Consensus 773 ~-~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~--sep~ 848 (1238)
T KOG1127|consen 773 I-HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRF--SEPT 848 (1238)
T ss_pred h-ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhh--cccc
Confidence 1 22223333333322 11 223455555543 23455667766554 444555555555544444 233
Q ss_pred CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHH
Q 043060 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-------EMKPDAAIW 507 (707)
Q Consensus 435 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~ 507 (707)
...+|..+.-.|....+++.|...|..... -.+.+...|-...-.....|+.-++..+|..- +--|+..-|
T Consensus 849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw 926 (1238)
T KOG1127|consen 849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW 926 (1238)
T ss_pred chhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence 334666666666667777777777766542 22224445544444445566666666666541 122444444
Q ss_pred HHHHHHHHhcCChhHHHH----------HHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 508 TSLLGACRVHGRLELGES----------VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 508 ~~ll~~~~~~g~~~~A~~----------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
..-..-...+|+.++-+. ..++.+...|+...+|...+....+.+.+.+|.+...+.
T Consensus 927 ~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 927 LCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 443333444444443332 333444455666666666666666666666666655544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1e-05 Score=80.64 Aligned_cols=209 Identities=11% Similarity=0.090 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcC-CHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCH--HHHHHHH
Q 043060 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG-NIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKA--DKALSLF 424 (707)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~~~ 424 (707)
+.|......+++..+. +..+|+....++.+.| .+++++..++++. .++..+|+.....+.+.|+. ++++.++
T Consensus 54 erAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 54 PRALDLTADVIRLNPG--NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred HHHHHHHHHHHHHCch--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHH
Confidence 3333334444433333 3334444444444444 4566666665543 23444565554444444542 5566777
Q ss_pred HHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc---CCH----HHHHHHHH
Q 043060 425 SRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA---GLF----DEAEALLK 496 (707)
Q Consensus 425 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~----~~A~~~~~ 496 (707)
+++++ ..|+. .++.....++.+.|+++++++.++.+++. -+-+...|+....++.+. |.. +++++...
T Consensus 132 ~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 132 RKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 77766 44543 36666666666667777777777777652 223445555555444443 222 45666654
Q ss_pred h-CCCCCC-HHHHHHHHHHHHhc----CChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcC------------------
Q 043060 497 T-MEMKPD-AAIWTSLLGACRVH----GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG------------------ 552 (707)
Q Consensus 497 ~-~~~~p~-~~~~~~ll~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------ 552 (707)
+ +...|+ ...|+.+...+... ++..+|...+.++++.+|+++.+...|+++|+...
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS 287 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 4 456675 78899888888773 34567889999999999999999999999998743
Q ss_pred ChhhHHHHHHHHh
Q 043060 553 RWDDVATIRTRLN 565 (707)
Q Consensus 553 ~~~~a~~~~~~m~ 565 (707)
..++|.++++.+.
T Consensus 288 ~~~~a~~~~~~l~ 300 (320)
T PLN02789 288 DSTLAQAVCSELE 300 (320)
T ss_pred cHHHHHHHHHHHH
Confidence 2366777777774
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-06 Score=75.86 Aligned_cols=96 Identities=10% Similarity=-0.059 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhc
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 551 (707)
.+..+...+...|++++|.+.|+.. ...|+ ...|..+..++...|++++|...|+++++++|+++.++..++.++...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4556788899999999999999986 56665 889999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhhCCC
Q 043060 552 GRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 552 g~~~~a~~~~~~m~~~~~ 569 (707)
|++++|+..+++..+...
T Consensus 106 g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 999999999999987654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.5e-05 Score=76.65 Aligned_cols=191 Identities=12% Similarity=0.061 Sum_probs=105.5
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC-----Ch--HHHHHHHHHHHHc
Q 043060 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-----TL--ASWNAMISGLAMH 414 (707)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~~ 414 (707)
..+...|+++.|...++...+..+. +...+..+...|...|++++|...+++.... +. ..|..+...+...
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~--~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPD--DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 3444555555555555555555444 4556677777777888888888887765321 21 2455677778888
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HhHH-H--HHHHHHhccCCHHHHHHH--HHHhHHhcCC-CCChHHHHHHHHHHHHcCC
Q 043060 415 GKADKALSLFSRMIGEGLQPD-DITF-V--GVLSACNHAGLLDIGRQY--FNAMIQDYKI-SPKLQHYGCMVDLLGRAGL 487 (707)
Q Consensus 415 g~~~~A~~~~~~m~~~g~~p~-~~t~-~--~ll~a~~~~g~~~~a~~~--~~~~~~~~~~-~p~~~~~~~li~~~~~~g~ 487 (707)
|++++|+.+|++.......+. .... + .++.-+...|..+.+.++ .......... ..........+.++...|+
T Consensus 200 G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 200 GDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred CCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCC
Confidence 888888888888764221112 1111 1 223333334433333332 1111111000 1111222245666778889
Q ss_pred HHHHHHHHHhCC--CCC---C------HHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 043060 488 FDEAEALLKTME--MKP---D------AAIWTSLLGACRVHGRLELGESVAKHLLELE 534 (707)
Q Consensus 488 ~~~A~~~~~~~~--~~p---~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 534 (707)
.++|..+++.+. .+. . ........-++...|+.+.|.+.+..++.+.
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999888761 111 1 1222233345568899999999998887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.7e-06 Score=85.55 Aligned_cols=217 Identities=12% Similarity=0.100 Sum_probs=167.9
Q ss_pred HhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHH
Q 043060 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR---DVISWNVMIGGYTHTSDYKEAL 319 (707)
Q Consensus 243 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 319 (707)
+.+.|++..|.-.|+..++.. +.+...|..|.......++-..|+..+++..+- |..+.-.|...|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 357788999999999988875 567889999999999999999999998887653 5677888888999999999999
Q ss_pred HHHHHHhhcCCC--------CChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHH
Q 043060 320 MLFRQMLQSNIE--------PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 391 (707)
Q Consensus 320 ~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 391 (707)
..|++.+....+ ++..+-.. ..+.....+....++|-.+........|+.+...|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999998654211 00000000 11122223344555665555555543388999999999999999999999
Q ss_pred HHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 392 VFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 392 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
.|+... ..|...||-|...++...+.++|+..|++.++ ++|+-+ ....|.-+|...|.+++|...|-.++.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999774 34778999999999999999999999999999 899876 556677789999999999988776543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.2e-05 Score=70.54 Aligned_cols=307 Identities=13% Similarity=0.097 Sum_probs=190.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHH---HHHHhCCChhHHHHHHHhCccccCCCCCCHhhH-HHHHHHH
Q 043060 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALI---TGYASRGYLDDARQLFDEMPIREENFVPNESTV-VTVLSAC 243 (707)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~-~~ll~~~ 243 (707)
.--|.+.+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.=|.+.+ .++||-..- ..--..+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl----elKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL----ELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHH----hcCccHHHHHHHhchhh
Confidence 334555666678888888888877777777776664 46777777777777777763 356663221 1112234
Q ss_pred hccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043060 244 AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFR 323 (707)
Q Consensus 244 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 323 (707)
.+.|.++.|..-|+.+++.....+. ...++.+.--.++-+ .....+..+...|+...|++...
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~------------~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHW------------VLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHH------------HHHHHHHHHhcCCchhhHHHHHH
Confidence 4666666666666666665321100 001111111111111 11123444556777777777777
Q ss_pred HHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChH-
Q 043060 324 QMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA- 402 (707)
Q Consensus 324 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~- 402 (707)
.+++.. +.|...+..-..+|...|.+..|+.-+..+.+...+ +.....-+...+...|+.+.++...++..+-|+.
T Consensus 180 ~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D--nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 180 HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD--NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc--chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch
Confidence 777642 235555555566677777777776666666555544 5666666777777888888887777765432221
Q ss_pred -----HHHHH---------HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HhH---HHHHHHHHhccCCHHHHHHHHHHhH
Q 043060 403 -----SWNAM---------ISGLAMHGKADKALSLFSRMIGEGLQPD--DIT---FVGVLSACNHAGLLDIGRQYFNAMI 463 (707)
Q Consensus 403 -----~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t---~~~ll~a~~~~g~~~~a~~~~~~~~ 463 (707)
.|..+ +......+++.++++..+...+. .|. .++ +..+-.++...|++.+|++...++.
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 12111 12345678899999999988874 454 233 3344556678899999999999887
Q ss_pred HhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 043060 464 QDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD 503 (707)
Q Consensus 464 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 503 (707)
.+.| |+.++.--.++|.-...+++|+.-|+.. ...++
T Consensus 335 ---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 335 ---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred ---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 4556 4888888889999999999999999987 44444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.8e-06 Score=74.09 Aligned_cols=119 Identities=10% Similarity=0.014 Sum_probs=98.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
+....-.+...+...|++++|.++|+-. ...|. ..-|..|...|...|++++|+..|.++..++|++|.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3444556677788999999999999986 55665 788999999999999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHhhCCCccCCcccEEeECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHH
Q 043060 549 AGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612 (707)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 612 (707)
...|+.+.|++.|+......- .+|+..++.+..+.....+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~-----------------------~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICG-----------------------EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhc-----------------------cChhHHHHHHHHHHHHHHhh
Confidence 999999999999998876321 35666666666665555544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.8e-05 Score=82.89 Aligned_cols=216 Identities=15% Similarity=0.151 Sum_probs=168.4
Q ss_pred CCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHH
Q 043060 264 LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343 (707)
Q Consensus 264 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 343 (707)
++|-...-..+...+.++|-...|..+|+++ ..|...|.+|+..|+..+|..+..+-.+ -+||+..|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4555566778899999999999999999984 5788899999999999999999988887 47888888888877
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHH
Q 043060 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKA 420 (707)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 420 (707)
..+..-+++|.++.+..... .-..+.....+.++++++.+.|+.-.. --..+|-....+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 77766677777777655332 222233333447889999999986433 3456888888888899999999
Q ss_pred HHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043060 421 LSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498 (707)
Q Consensus 421 ~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 498 (707)
.+.|..-.. ..||.. .|+.+-.+|.+.++-.+|...+.+..+- + ..+...|-..+-...+.|.+++|++.+.++
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999998888 788877 7999999999999999999999888763 3 334445555566677889999999988876
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-07 Score=58.21 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=25.1
Q ss_pred CCCCChhHHHHHHHHHHhCCChhHHHHHHhcCC
Q 043060 160 GLESDPFVHTSLINMYAQNGELESARLVFNKSS 192 (707)
Q Consensus 160 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 192 (707)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.5e-05 Score=87.07 Aligned_cols=212 Identities=16% Similarity=0.189 Sum_probs=171.9
Q ss_pred CHhhHHHHHHHHhccCCchHHHHHHHHHHHcC-C---CchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-hhhHHHH
Q 043060 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHG-L---GSNLHVTNALIDMYSKCGDLVKARDLFESIEKR-D-VISWNVM 305 (707)
Q Consensus 232 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~l 305 (707)
+...|...|......++++.|+++.+++++.= + .--..+|.+++++-..-|.-+...++|++..+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34567777888888899999999988887641 1 113468889999888889889999999998763 3 3568889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCC
Q 043060 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385 (707)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 385 (707)
...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++++.-+.........-.+++-.++|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999875 33456678888888889888899999999998876665577778888899999999
Q ss_pred HHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHH
Q 043060 386 IKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI--TFVGVLS 444 (707)
Q Consensus 386 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~ 444 (707)
.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-.. .|...+.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 9999999998743 356689999999999999999999999999988877653 3444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.4e-07 Score=57.67 Aligned_cols=33 Identities=33% Similarity=0.565 Sum_probs=26.2
Q ss_pred CCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043060 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIE 295 (707)
Q Consensus 263 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 295 (707)
|+.||..+||.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887774
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.9e-05 Score=72.38 Aligned_cols=304 Identities=14% Similarity=0.107 Sum_probs=185.8
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhhHHH-HHHHHHh
Q 043060 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKR--DVISWNV-MIGGYTH 311 (707)
Q Consensus 235 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~ 311 (707)
-+.+++..+.+..++..+.+++..-.++. +.+....+.|..+|....++..|-..|+++..- ...-|.. -...+-+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 35555555666667777777766655552 225556667777777788888888888776542 2222221 2345556
Q ss_pred cCCHHHHHHHHHHHhhcCCCCChhhHHhHHHH--HhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHH
Q 043060 312 TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA--CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389 (707)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 389 (707)
.+.+.+|+++...|.+. |+-..-..-+.+ ....+++..++.+.+.....+ +..+.+.......+.|+.+.|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHHH
Confidence 77888888888777653 222111111111 234566666666655543222 444555566666788888888
Q ss_pred HHHHhcCCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 043060 390 EQVFDGMGY----KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465 (707)
Q Consensus 390 ~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 465 (707)
.+-|+...+ .....||..+. ..+.|+++.|+++..++++.|++-.+..- .|...++..+ +.
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElg---------IGm~tegiDv-----rs 228 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELG---------IGMTTEGIDV-----RS 228 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccC---------ccceeccCch-----hc
Confidence 888887643 24456665443 44567888888888888887764322110 0111010000 00
Q ss_pred cCCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 043060 466 YKISPK-------LQHYGCMVDLLGRAGLFDEAEALLKTME----MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE 534 (707)
Q Consensus 466 ~~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 534 (707)
--.|- +..+|.-...+.+.|+++.|.+-+..|| .+.|++|...+.-. -..+++..+.+-+.-+++++
T Consensus 229 -vgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 229 -VGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred -ccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC
Confidence 00011 1233334445678999999999999994 33567777665432 23456777777788888999
Q ss_pred CCCchhHHHHHHHhhhcCChhhHHHHHHH
Q 043060 535 PENPGAYVLLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 535 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 563 (707)
|-.+.++..++-+|++..-++-|..++-+
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 98889999999999999999999887755
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0023 Score=65.24 Aligned_cols=130 Identities=15% Similarity=0.174 Sum_probs=85.3
Q ss_pred CCchhhhhhhchhhcccCCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHH
Q 043060 59 HNTQFALSKLIEICAVSPFGDLSYALLVFETIRE--P-NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPF 135 (707)
Q Consensus 59 ~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 135 (707)
+.|..+|+.|| .-+. ....++++..++++.. | ....|..-|..-.+.++++....+|.+-+..- .+...|..
T Consensus 17 P~di~sw~~li--re~q-t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLI--REAQ-TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKL 91 (656)
T ss_pred CccHHHHHHHH--HHHc-cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHH
Confidence 45888999999 5554 4499999999999875 4 44579999999999999999999999988653 34555555
Q ss_pred HHHHHhc-cCChHHH----HHHHHHH-HHhCCCCC-hhHHHHHHHHH---------HhCCChhHHHHHHhcCCC
Q 043060 136 ILKSCAK-ISAISEG----KQIHAHV-LKLGLESD-PFVHTSLINMY---------AQNGELESARLVFNKSSL 193 (707)
Q Consensus 136 ll~~~~~-~~~~~~a----~~~~~~~-~~~g~~~~-~~~~~~li~~~---------~~~g~~~~A~~~f~~~~~ 193 (707)
-|.--.+ .+..... .+.++.. .+.|.++- -..|+..+..+ ....+++..+++++++..
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 5443322 2333222 2233332 34454433 23466655543 345577888888887764
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-05 Score=77.84 Aligned_cols=183 Identities=14% Similarity=0.025 Sum_probs=130.0
Q ss_pred ChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCc-HHHHhHHhhHHHhcCCHHHHHHHHhcCCCC---ChH---HHH
Q 043060 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN-VSLWTSLIDMYAKCGNIKAAEQVFDGMGYK---TLA---SWN 405 (707)
Q Consensus 333 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~---~~~ 405 (707)
....+......+...|+++.|...++.+.+..+..+. ...+..+...|.+.|++++|...++++... +.. .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4456667777888999999999999999988765322 346788899999999999999999987422 222 455
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 043060 406 AMISGLAMH--------GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477 (707)
Q Consensus 406 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 477 (707)
.+..++.+. |++++|++.|+++.. ..|+.......+..... . .... . .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~---~------~~~~-~--------~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY---L------RNRL-A--------GKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH---H------HHHH-H--------HHHHH
Confidence 666666654 789999999999998 56665422111111000 0 0000 0 11225
Q ss_pred HHHHHHHcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 043060 478 MVDLLGRAGLFDEAEALLKTM----EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEP 535 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 535 (707)
+...|.+.|++++|...+++. +-.|. ...|..++.++...|++++|...++.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 667789999999999999886 22343 57888999999999999999998888776555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00025 Score=72.04 Aligned_cols=434 Identities=15% Similarity=0.096 Sum_probs=226.9
Q ss_pred cccCCCChHHHHHHHhcCC---CCCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCC-cccHHHHHHHHhccCChHH
Q 043060 73 AVSPFGDLSYALLVFETIR---EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPN-TYTFPFILKSCAKISAISE 148 (707)
Q Consensus 73 ~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~ 148 (707)
+....|+++.|...|-+.. .+|-+.|+--..+|+..|++++|++=-.+-.+. .|+ ...|+-...++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHH
Confidence 3346677888888876643 356667777777788888887777665555443 343 4567777777777788888
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHH-----HHHHHHHhCCChhHHHHHHHhCc
Q 043060 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYT-----ALITGYASRGYLDDARQLFDEMP 223 (707)
Q Consensus 149 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~ 223 (707)
|..-+..-++.. +.+...++.|..++.- + ..+.+.|. +...|. .+.+.+...-.+..-++.+..-+
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~--~-~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLE--D-YAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhH--H-HHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 887777766653 4445566666666611 0 11112221 001111 01111111111111111111110
Q ss_pred cccCCCCCCHhhHHHHHHHHhccCCchHHHHHH-HHH-HHcCCCc----------------------hhHHHHHHHHHHH
Q 043060 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVC-SLI-EGHGLGS----------------------NLHVTNALIDMYS 279 (707)
Q Consensus 224 ~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~-~~~-~~~g~~~----------------------~~~~~~~li~~~~ 279 (707)
..+..... ...++.+.......+.....- ..+ ...+..| -..-...+.++..
T Consensus 160 ---~~l~~~l~-d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay 235 (539)
T KOG0548|consen 160 ---TSLKLYLN-DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY 235 (539)
T ss_pred ---Hhhhcccc-cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 00000000 001111111100000000000 000 0000000 0111233445555
Q ss_pred hcCCHHHHHHHHHhcCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHH
Q 043060 280 KCGDLVKARDLFESIEKR--DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357 (707)
Q Consensus 280 ~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 357 (707)
+..+++.|.+-++...+- ++.-++....+|...|.+.+....-.+..+.|.. ...-|+.+-
T Consensus 236 kkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIa---------------- 298 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIA---------------- 298 (539)
T ss_pred HhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHH----------------
Confidence 555555565555554332 2333444455566666655555554444433311 000011100
Q ss_pred HHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043060 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK--TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435 (707)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 435 (707)
.....+..+|.+.++.+.|...|.+.... +.. ...+....++++.......- +.|+
T Consensus 299 -------------k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe 356 (539)
T KOG0548|consen 299 -------------KALARLGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPE 356 (539)
T ss_pred -------------HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChh
Confidence 01112445666778888888888764321 211 12233445566655555544 4454
Q ss_pred Hh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 043060 436 DI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLG 512 (707)
Q Consensus 436 ~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 512 (707)
.. -...-.+.+.+.|++..|...|.++++. .+-|...|+...-+|.+.|.+..|++=.+.. ...|+ ...|.-=+.
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGA 434 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 42 2222356778889999999999998873 3557788999999999999999988876664 55666 455655566
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHH
Q 043060 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562 (707)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 562 (707)
++....+++.|.+.|++.++.+|++......+..++......+.-.++.+
T Consensus 435 al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 67777899999999999999999988777777777665433333344433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.6e-05 Score=73.72 Aligned_cols=154 Identities=9% Similarity=0.110 Sum_probs=115.4
Q ss_pred HhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHH
Q 043060 376 LIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDI 454 (707)
Q Consensus 376 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 454 (707)
-+..|...|+++.+....+.+..+. ..+...++.++++..+++..+ ..|+. ..|..+...|...|++++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3556778888777655543322111 012235667888888888877 45554 478888888999999999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHH-HHHcCC--HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHH
Q 043060 455 GRQYFNAMIQDYKISPKLQHYGCMVDL-LGRAGL--FDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKH 529 (707)
Q Consensus 455 a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 529 (707)
|...|+...+ -.+.+...+..+..+ +.+.|+ .++|.+++++. ...|+ ..++..+...+...|++++|+..+++
T Consensus 92 A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 92 ALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998875 333477788888886 467787 59999999996 56675 78899999999999999999999999
Q ss_pred HHccCCCCchhH
Q 043060 530 LLELEPENPGAY 541 (707)
Q Consensus 530 ~~~~~p~~~~~~ 541 (707)
++++.|++..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 999998765443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.3e-05 Score=86.19 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=117.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 478 (707)
++..+-.|.....+.|.+++|..+++...+ +.||.. ....+...+.+.+.+++|...++.... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 567788888888999999999999999998 888887 677788899999999999999998875 344466778888
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 043060 479 VDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 544 (707)
..++.+.|++++|.++|+++ ...|+ ..+|.++..++.+.|+.++|...|+++++...+-...|..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 88999999999999999997 34555 78999999999999999999999999998765544555443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00011 Score=86.53 Aligned_cols=325 Identities=11% Similarity=0.047 Sum_probs=197.7
Q ss_pred HHHhCCChhHHHHHHhcCCC----CCeehHHHHHHHHHhCCChhHHHHHHHhCccccCC----CCCCHh--hHHHHHHHH
Q 043060 174 MYAQNGELESARLVFNKSSL----RDAVSYTALITGYASRGYLDDARQLFDEMPIREEN----FVPNES--TVVTVLSAC 243 (707)
Q Consensus 174 ~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~----~~p~~~--t~~~ll~~~ 243 (707)
.....|+++.+...++.++. .+..........+...|++++|..++......-.. ..|... ....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456777777777777642 23333344455556778888888887765311011 111212 222333445
Q ss_pred hccCCchHHHHHHHHHHHcCCCch----hHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC--hhhHHHHHHHHH
Q 043060 244 AHMGSLELGNWVCSLIEGHGLGSN----LHVTNALIDMYSKCGDLVKARDLFESIEK-------RD--VISWNVMIGGYT 310 (707)
Q Consensus 244 ~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~ 310 (707)
...|+++.+...+......--..+ ....+.+...+...|++++|...+++... .. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 678888888888888766311112 23456667778888999888888877652 11 224455666778
Q ss_pred hcCCHHHHHHHHHHHhhc----CCC--C-ChhhHHhHHHHHhccCCchHHHHHHHHHHHhCC---CCCcHHHHhHHhhHH
Q 043060 311 HTSDYKEALMLFRQMLQS----NIE--P-NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQ---KLNNVSLWTSLIDMY 380 (707)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~li~~y 380 (707)
..|++++|...+++.... +.. + ....+..+...+...|+++.|...+........ .......+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 889999998888776542 211 1 122333444456667888888888877655311 111344555577788
Q ss_pred HhcCCHHHHHHHHhcCC----CC-ChHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh---HHHHHHHHHh
Q 043060 381 AKCGNIKAAEQVFDGMG----YK-TLASWN-----AMISGLAMHGKADKALSLFSRMIGEGLQPDDI---TFVGVLSACN 447 (707)
Q Consensus 381 ~~~g~~~~A~~~~~~~~----~~-~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~ 447 (707)
...|+.++|.+.++... .. ....+. ..+..+...|+.+.|..++.+........... ....+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999888877652 11 111111 12244456788888888877755421111111 1345666778
Q ss_pred ccCCHHHHHHHHHHhHHh---cCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043060 448 HAGLLDIGRQYFNAMIQD---YKISPK-LQHYGCMVDLLGRAGLFDEAEALLKTM 498 (707)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 498 (707)
..|+.++|...++..... .+..++ ..+...+..+|.+.|+.++|.+.+.+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 889999998888876543 233332 245667778889999999999988875
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.4e-05 Score=72.27 Aligned_cols=153 Identities=16% Similarity=0.189 Sum_probs=97.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 043060 405 NAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG 483 (707)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 483 (707)
..+-..+...|+.+....+..+... ..| |.......+....+.|++.+|...|.+... .-++|...|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence 3344555556666666665555443 222 222334455666666777777777766654 55566677777777777
Q ss_pred HcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHH
Q 043060 484 RAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIR 561 (707)
Q Consensus 484 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 561 (707)
+.|++++|..-|.+. .+.|+ +...+.|...+.-.|+.+.|..++.......+.++.+-..|+-+....|++++|..+.
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 777777777666664 44444 6666777777777777777777777777666666667777777777777777776543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-05 Score=84.20 Aligned_cols=188 Identities=13% Similarity=0.034 Sum_probs=114.7
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMG--YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 450 (707)
+...+.+|...|+..+|..+..+-. ++|...|-.+.+......-+++|.++++..... .-..+.....+.+
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNK 499 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccch
Confidence 3344455555555555554443322 234444444444444444445555554433221 0000111112245
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 043060 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAK 528 (707)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~ 528 (707)
+++++...|+.-.+- .+.-..+|-.+.-+..+.++++.|.+.|... ...|| ...||++-.+|.+.|+-.+|...+.
T Consensus 500 ~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 500 DFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred hHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 566666666544431 1224456666666777888888888888775 66777 7788888888888888888888888
Q ss_pred HHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 529 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
++++-+-++...|.+..-...+.|.|++|.+.+.++.+...
T Consensus 578 EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 578 EALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 88887777777777777788888888888888888865443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.7e-05 Score=71.90 Aligned_cols=136 Identities=19% Similarity=0.175 Sum_probs=113.8
Q ss_pred CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 043060 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM--EMKPDAAIWTS 509 (707)
Q Consensus 432 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 509 (707)
..|+......+-.++...|+-+....+...... ..+.|......++....+.|++.+|...|++. .-.||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 455444335666677788888888888777543 34446667777999999999999999999997 33456999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 510 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+..+|.+.|+++.|...|.+++++.|.++..+..|+-.|.-.|+.++|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999998876543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.6e-05 Score=75.40 Aligned_cols=191 Identities=9% Similarity=0.098 Sum_probs=140.6
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHH
Q 043060 372 LWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHG-KADKALSLFSRMIGEGLQPDDI-TFVGVLSAC 446 (707)
Q Consensus 372 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~ 446 (707)
++..+-..+...++.++|+...+++.. .+..+|+.....+...| ++++++..++++.+ ..|+.. ++..-...+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHH
Confidence 344444555667778888888887643 35567887777777777 57999999999998 455554 555444445
Q ss_pred hccCC--HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC
Q 043060 447 NHAGL--LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVH---GR 519 (707)
Q Consensus 447 ~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~ 519 (707)
.+.|. .+++..+++.+.+ .-+-+...|+...-++.+.|++++|++.++++ ...| |..+|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc
Confidence 55565 3678888888876 33457788888888999999999999999997 4445 478888887776554 22
Q ss_pred h----hHHHHHHHHHHccCCCCchhHHHHHHHhhhc----CChhhHHHHHHHHhh
Q 043060 520 L----ELGESVAKHLLELEPENPGAYVLLSNMYAGA----GRWDDVATIRTRLND 566 (707)
Q Consensus 520 ~----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 566 (707)
. +.+.....++++.+|+|..+|..+..++... ++..+|.+...+..+
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 2 4677788899999999999999999999873 445667777766554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.4e-06 Score=71.40 Aligned_cols=98 Identities=17% Similarity=0.286 Sum_probs=79.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
+......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3345556777778888888888888775 4445 4778888888888888999999999988888888888888999999
Q ss_pred hhcCChhhHHHHHHHHhhCC
Q 043060 549 AGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~ 568 (707)
...|++++|.+.+++..+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 99999999999888877654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=8e-05 Score=82.01 Aligned_cols=139 Identities=11% Similarity=0.074 Sum_probs=111.5
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLS 444 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 444 (707)
+...+..|.......|.+++|+.+++... ..+...+..++..+.+.+++++|+..+++... ..|+.. ....+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHH
Confidence 57788888999999999999999999874 33566888889999999999999999999998 678776 4556666
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 043060 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM--EMKPDAAIWTSLL 511 (707)
Q Consensus 445 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 511 (707)
++.+.|++++|..+|+++.. ..+-+...+..+..++...|+.++|...|++. ...|-...|+.++
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 78889999999999999986 33345778888999999999999999999986 2234455555444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00012 Score=73.55 Aligned_cols=114 Identities=22% Similarity=0.245 Sum_probs=57.1
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 043060 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGES 525 (707)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~ 525 (707)
..|.+++|+..++.+++ ..+.|...+....+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 34445555555555443 22233444444445555555555555555553 33444 4444555555555555555555
Q ss_pred HHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHH
Q 043060 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 526 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 563 (707)
.++..+..+|+++..|..|+.+|...|+..++...+.+
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 55555555555555555555555555555554444433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00028 Score=78.58 Aligned_cols=165 Identities=11% Similarity=0.066 Sum_probs=77.5
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 043060 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314 (707)
Q Consensus 235 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 314 (707)
.+..|+..+...++++++.++.....+.. +.....|-.+...|...++.+++..+ .++.......+
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~ 98 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLK 98 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccc
Confidence 44555555555566666655555444331 11222222233344444443333322 22222223333
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHh
Q 043060 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394 (707)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 394 (707)
+.-..-+...|... .-+...+..+..+|.+.|+.+++..+++.+++..+. ++.+.|.+...|+.. ++++|.+++.
T Consensus 99 ~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~--n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 99 WAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD--NPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred hhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 32222222233321 112234445555555666666666666666665543 555666666666655 6666655554
Q ss_pred cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043060 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429 (707)
Q Consensus 395 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (707)
+. +..|...+++.++.++|.++..
T Consensus 174 KA-----------V~~~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 174 KA-----------IYRFIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HH-----------HHHHHhhhcchHHHHHHHHHHh
Confidence 32 2224445555666666666655
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.5e-05 Score=66.39 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=90.3
Q ss_pred HHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 043060 423 LFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EM 500 (707)
Q Consensus 423 ~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 500 (707)
.|++... ..|+.. ....+...+...|++++|.+.|+.+... .+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556665 566553 4566777788889999999999888762 3446778888899999999999999998886 45
Q ss_pred CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 043060 501 KPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539 (707)
Q Consensus 501 ~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 539 (707)
.|+ ...|..+...+...|+++.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 554 778888888999999999999999999999998764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0013 Score=60.89 Aligned_cols=157 Identities=18% Similarity=0.153 Sum_probs=83.6
Q ss_pred hHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----c
Q 043060 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH----A 449 (707)
Q Consensus 374 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~ 449 (707)
..-...|.+.|++++|.+.......-+....+ +..+.+..+.+-|.+.+++|.+ + -+..|.+.|..++.+ .
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~--i-ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ--I-DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc--c-chHHHHHHHHHHHHHHhccc
Confidence 33345677778888888777763322332222 3345566677777777887776 2 244466555555432 3
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCh-hHHHHH
Q 043060 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMK-PDAAIWTSLLGACRVHGRL-ELGESV 526 (707)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~-~~A~~~ 526 (707)
+.+.+|.-+|++|.+ ..+|+..+.+.+..+....|++++|..++++. ... .++.+...++-.-...|.. +.-.+.
T Consensus 187 ek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 446666666666654 34455555555555555566666666665554 111 2344444444333333332 333344
Q ss_pred HHHHHccCCCC
Q 043060 527 AKHLLELEPEN 537 (707)
Q Consensus 527 ~~~~~~~~p~~ 537 (707)
..++....|..
T Consensus 265 l~QLk~~~p~h 275 (299)
T KOG3081|consen 265 LSQLKLSHPEH 275 (299)
T ss_pred HHHHHhcCCcc
Confidence 44555555543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00033 Score=70.53 Aligned_cols=147 Identities=20% Similarity=0.188 Sum_probs=116.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHH-HHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV-LSACNHAGLLDIGRQYFNAMIQDYKISPK-LQHYGC 477 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 477 (707)
....+......+...|++++|+..++.++. -.||...|..+ ...+.+.++.++|.+.++.+.. ..|+ ....-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHH
Confidence 334444455556678999999999999988 57777766554 5578899999999999999875 3454 556667
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChh
Q 043060 478 MVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 555 (707)
+.++|.+.|++.+|+.+++.. .-.| |+..|..|..+|...|+..++... .+..|...|+|+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~ 442 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLE 442 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHH
Confidence 889999999999999999986 3334 589999999999999997766554 456788899999
Q ss_pred hHHHHHHHHhhCC
Q 043060 556 DVATIRTRLNDKG 568 (707)
Q Consensus 556 ~a~~~~~~m~~~~ 568 (707)
+|+.......++.
T Consensus 443 ~A~~~l~~A~~~~ 455 (484)
T COG4783 443 QAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998888764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.6e-05 Score=75.20 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=101.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 043060 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRV 516 (707)
Q Consensus 439 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 516 (707)
..+|+..+...++++.|.++|+++.+. .|+ ....++..+...++-.+|.+++++. ...| |...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 455666777788899999999998764 244 4445788888888889999988885 3344 47777777888999
Q ss_pred cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
.++++.|..+++++.+..|.+..+|..|+.+|.+.|++++|.-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999888775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.014 Score=59.70 Aligned_cols=440 Identities=13% Similarity=0.134 Sum_probs=240.0
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 043060 93 PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLI 172 (707)
Q Consensus 93 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 172 (707)
-|+.+|+.||+-+... ..+++.+.|+++... ++-....|..-+..-.+..+++..+.+|.+.+..-+ +...|...+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 3888999999987666 899999999999853 334556788888888889999999999998887644 344555555
Q ss_pred HHHHh-CCChhHH----HHHHh------cCCCCCeehHHHHHHH---------HHhCCChhHHHHHHHhCccccCCCCCC
Q 043060 173 NMYAQ-NGELESA----RLVFN------KSSLRDAVSYTALITG---------YASRGYLDDARQLFDEMPIREENFVPN 232 (707)
Q Consensus 173 ~~~~~-~g~~~~A----~~~f~------~~~~~~~~~~~~li~~---------~~~~g~~~~A~~l~~~m~~~~~~~~p~ 232 (707)
+---+ .|+...+ .+.|+ .|.-.+-..|+..|.- |..+.+.+...++|.+++. . |
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~--t---P- 167 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV--T---P- 167 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc--C---c-
Confidence 43222 2333332 22222 1222344456655543 2333445555666666632 1 1
Q ss_pred HhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC------CC--------
Q 043060 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK------RD-------- 298 (707)
Q Consensus 233 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~-------- 298 (707)
.+++++-..=+....+ ..|..+..-++. -+...+..|+++++++.. ++
T Consensus 168 -------------m~nlEkLW~DY~~fE~---~IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~ 229 (656)
T KOG1914|consen 168 -------------MHNLEKLWKDYEAFEQ---EINIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKG 229 (656)
T ss_pred -------------cccHHHHHHHHHHHHH---HHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Confidence 0111111111111000 011111111110 111223344444443320 00
Q ss_pred -------hhhHHHHHHHHHhcCCH--------HHHHHHHHH-HhhcCCCCChhhHH-hHH----HHHhccCCc-------
Q 043060 299 -------VISWNVMIGGYTHTSDY--------KEALMLFRQ-MLQSNIEPNDVTFL-SVL----PACAYLGAL------- 350 (707)
Q Consensus 299 -------~~~~~~li~~~~~~g~~--------~~A~~~~~~-m~~~g~~p~~~t~~-~ll----~~~~~~~~~------- 350 (707)
+..|-.+|.-=..++.- ....=.+++ |.-.+..|+..-.. ..+ +.+...|+.
T Consensus 230 T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t 309 (656)
T KOG1914|consen 230 TKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLT 309 (656)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhH
Confidence 11233333222111110 001111111 11123333322111 111 112223332
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcC---CHHHHHHHHhcCCC----CChHHHHHHHHHHHHcCCHHHHHHH
Q 043060 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG---NIKAAEQVFDGMGY----KTLASWNAMISGLAMHGKADKALSL 423 (707)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~ 423 (707)
+++..+++..+..-... +..+|..+.+---..- ..+.....+++... .-..+|-..++.-.+..-.+.|..+
T Consensus 310 ~e~~~~yEr~I~~l~~~-~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKE-NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 44555555555443333 4445554443221111 13333444443321 2234677778887888889999999
Q ss_pred HHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC---C
Q 043060 424 FSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM---E 499 (707)
Q Consensus 424 ~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~ 499 (707)
|.+..+.+..+ +.....+++.-+ -+++.+-|.++|+.=.+.+|- +...-...++-+.+.++-..|..+|++. .
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999998888 444666666544 467899999999987775543 4444567788899999999999999997 2
Q ss_pred CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc----hhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 500 MKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP----GAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 500 ~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
+.|| ..+|..++.--..-|++..+.++-++....-|.+. ..-..+.+.|.-.+....-..-++.|
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 3455 67999999999999999999999888877655211 23344556666666655444444433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0014 Score=60.21 Aligned_cols=168 Identities=15% Similarity=0.186 Sum_probs=115.2
Q ss_pred hHHhhHHHhcCCHHHHHHHHhcCCCCChHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC
Q 043060 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASW---NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450 (707)
Q Consensus 374 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 450 (707)
..+.-+...+|+.+.|..+++.+..+=+.++ ..-..-+-..|++++|+++|+.+++.. +.|.+++..=+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 3334444455666666666555422111111 111122455788999999999998864 445567776666667778
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC---ChhHHHH
Q 043060 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHG---RLELGES 525 (707)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g---~~~~A~~ 525 (707)
+--+|++-+....+ .+..|.+.|.-+.+.|...|++++|.--++++ -+.|- +..+..+...+...| +.+.|.+
T Consensus 135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77788888887776 56679999999999999999999999999987 44564 556666666655444 6788999
Q ss_pred HHHHHHccCCCCchhHHHH
Q 043060 526 VAKHLLELEPENPGAYVLL 544 (707)
Q Consensus 526 ~~~~~~~~~p~~~~~~~~l 544 (707)
.|.+++++.|.+...+..+
T Consensus 213 yy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHhChHhHHHHHHH
Confidence 9999999999665555444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.9e-06 Score=52.29 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=31.5
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCc
Q 043060 96 VIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130 (707)
Q Consensus 96 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 130 (707)
++||++|.+|++.|++++|.++|.+|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999998874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0026 Score=71.12 Aligned_cols=233 Identities=13% Similarity=0.094 Sum_probs=124.3
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHH
Q 043060 267 NLHVTNALIDMYSKCGDLVKARDLFESIEK--R-DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343 (707)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 343 (707)
+...+..|++.|...+++++|.++.+...+ | ....|-.+...+.+.++.+++..+ .+.. .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---------------~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID---------------S 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------h
Confidence 456667777777777777777777765443 2 223344444455566655555444 2222 2
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHH
Q 043060 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKA 420 (707)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 420 (707)
.....++.....+...+...+. +..++..|..+|-+.|+.++|..+++++. ..|+...|.+...|+.. +.++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~---~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGE---NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhhhh---hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 2222223223333333333222 44466677777777777777777777663 33566777777777777 77777
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 043060 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEM 500 (707)
Q Consensus 421 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 500 (707)
++++.+.+.. +...+++..+.+++.++.. ..+-+...+--+..... ...+.
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~------------~~~~~ 219 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVL------------GHREF 219 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHH------------hhhcc
Confidence 7777776652 3444556666666666654 22222222211111111 11111
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 501 KPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 501 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
.--..++--+-.-|...++++.+..+++.+++.+|.|..+...++..|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1123344444455555666666666666666666666666555555554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.5e-06 Score=51.31 Aligned_cols=34 Identities=38% Similarity=0.831 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD 436 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 436 (707)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0002 Score=72.97 Aligned_cols=128 Identities=12% Similarity=0.129 Sum_probs=97.3
Q ss_pred HHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhc
Q 043060 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNH 448 (707)
Q Consensus 370 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 448 (707)
-....+|+..+...++++.|..+|+++...++..+..++..+...++-.+|++++++.+.. .| +...+..-...|..
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS 246 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 3445566777777888899999999888777777777888888888888899988888863 44 33344445556778
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 043060 449 AGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP 502 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 502 (707)
.++++.|..+.+++.+ ..| +..+|..|+.+|.+.|++++|+..++.+|..|
T Consensus 247 k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred cCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 8888888888888875 344 55688888888888888888888888886554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00021 Score=62.92 Aligned_cols=114 Identities=20% Similarity=0.212 Sum_probs=58.6
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhH
Q 043060 449 AGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~ 522 (707)
.++...+...++.+.++++-.+ .....-.+...+...|++++|...|+.. ...|| ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555554322221 1122223445555666666666666654 11122 2234445555666666666
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHH
Q 043060 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 523 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 563 (707)
|+..++.. .-.+..+..+..++++|.+.|++++|+..|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 22233445566666667777777777666654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.047 Score=59.53 Aligned_cols=215 Identities=14% Similarity=0.120 Sum_probs=126.8
Q ss_pred HHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH--hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 043060 104 GHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC--AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGEL 181 (707)
Q Consensus 104 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 181 (707)
.....+++..|+....+..+. .||. .|..+++++ .+.|..++|..+++.....+. .|..+...+-..|-..|+.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhh
Confidence 345567788888888887765 3443 355566654 477888888877776665543 3777888888888888888
Q ss_pred hHHHHHHhcCCCCCee--hHHHHHHHHHhCCChh----HHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCC-------
Q 043060 182 ESARLVFNKSSLRDAV--SYTALITGYASRGYLD----DARQLFDEMPIREENFVPNESTVVTVLSACAHMGS------- 248 (707)
Q Consensus 182 ~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~----~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~------- 248 (707)
++|..++++....++. ....+..+|++.+.+. .|++++... +-+.+.|-++++...+.-.
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~-------pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF-------PKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CcccchHHHHHHHHHHhccCCccccc
Confidence 8888888877655333 3334455666666554 456666544 2256666666666543311
Q ss_pred ---chHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcCCHHHHHHHHHhc-----CCCChhhHHHHHHHHHhcCCHHHHH
Q 043060 249 ---LELGNWVCSLIEGHG-LGSNLHVTNALIDMYSKCGDLVKARDLFESI-----EKRDVISWNVMIGGYTHTSDYKEAL 319 (707)
Q Consensus 249 ---~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~ 319 (707)
+..|....+.+++.+ --.+..-...........|++++|++++..- ...+...-+.-+..+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 123444455554443 1111112222233445566777777776321 1223334444556666777777777
Q ss_pred HHHHHHhhcC
Q 043060 320 MLFRQMLQSN 329 (707)
Q Consensus 320 ~~~~~m~~~g 329 (707)
++-.++...|
T Consensus 247 ~l~~~Ll~k~ 256 (932)
T KOG2053|consen 247 ELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhC
Confidence 7777776665
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.5e-05 Score=58.66 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcC-ChhhHHHHHHHHhhC
Q 043060 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG-RWDDVATIRTRLNDK 567 (707)
Q Consensus 503 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 567 (707)
++.+|..+...+...|++++|+..|+++++++|+++.+|..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999999999999999999 799999999987763
|
... |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.4e-05 Score=50.10 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=28.5
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCC
Q 043060 95 QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVP 128 (707)
Q Consensus 95 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 128 (707)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888876
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.3e-05 Score=59.37 Aligned_cols=93 Identities=25% Similarity=0.330 Sum_probs=76.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcC
Q 043060 475 YGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 552 (707)
+..+...+...|++++|...+++. ...|+ ...+..+...+...|+++.|.+.++++.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445667778888889998888875 44454 5677788888888899999999999999988888888889999999999
Q ss_pred ChhhHHHHHHHHhhC
Q 043060 553 RWDDVATIRTRLNDK 567 (707)
Q Consensus 553 ~~~~a~~~~~~m~~~ 567 (707)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988887654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0031 Score=58.57 Aligned_cols=146 Identities=13% Similarity=0.094 Sum_probs=95.9
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCC-hHHHHHHHHHHHH----cCCH
Q 043060 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT-LASWNAMISGLAM----HGKA 417 (707)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~----~g~~ 417 (707)
.|.+.++++.|....... . +..+.-.=+..+.+..+++-|.+.+++|.+-| -.+.+.|..++.+ .+..
T Consensus 117 i~~~~~~~deAl~~~~~~----~---~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLG----E---NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred HhhcCCChHHHHHHHhcc----c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhh
Confidence 455555555555544331 0 33333444555667778888888888887653 3466666666543 3458
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHH-HHHHH
Q 043060 418 DKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA-EALLK 496 (707)
Q Consensus 418 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~~~~ 496 (707)
.+|.-+|++|-+. ..|+..+.+....++...|++++|..++++...+ -..++.+...++-+-...|...++ .+.+.
T Consensus 190 qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 190 QDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 8899999998765 7888889999999999999999999999988764 334555665565555556655444 33444
Q ss_pred hC
Q 043060 497 TM 498 (707)
Q Consensus 497 ~~ 498 (707)
+.
T Consensus 267 QL 268 (299)
T KOG3081|consen 267 QL 268 (299)
T ss_pred HH
Confidence 44
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0012 Score=60.67 Aligned_cols=162 Identities=15% Similarity=0.156 Sum_probs=128.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 482 (707)
|..++-+....|+.+.|...++++... + |.+. .-..-..-+...|++++|.++++.+.++ -+.|..+|.--+-+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 444555666788999999999999875 3 5544 2222222355689999999999999874 455778888888888
Q ss_pred HHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcC---ChhhH
Q 043060 483 GRAGLFDEAEALLKTM--EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG---RWDDV 557 (707)
Q Consensus 483 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a 557 (707)
-..|+.-+|++-+.+. .+-.|...|.-|...|...|+++.|.-.+++++-..|.++..+..+++.+.-.| +.+-+
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8889988998877765 455689999999999999999999999999999999999999999999976655 45567
Q ss_pred HHHHHHHhhCCC
Q 043060 558 ATIRTRLNDKGM 569 (707)
Q Consensus 558 ~~~~~~m~~~~~ 569 (707)
.+++.+..+...
T Consensus 211 rkyy~~alkl~~ 222 (289)
T KOG3060|consen 211 RKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHhCh
Confidence 788888777544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.7e-05 Score=62.30 Aligned_cols=78 Identities=21% Similarity=0.396 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHH
Q 043060 485 AGLFDEAEALLKTM-EMKP---DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATI 560 (707)
Q Consensus 485 ~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 560 (707)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777765 2222 455566677788888888888888877 666776767777778888888888888888
Q ss_pred HHH
Q 043060 561 RTR 563 (707)
Q Consensus 561 ~~~ 563 (707)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00017 Score=73.80 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=46.8
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHH
Q 043060 482 LGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 559 (707)
+...|++++|++.|+++ ...|+ ...|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|+.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 44455555555555553 33333 44555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHhhC
Q 043060 560 IRTRLNDK 567 (707)
Q Consensus 560 ~~~~m~~~ 567 (707)
.+++..+.
T Consensus 92 ~~~~al~l 99 (356)
T PLN03088 92 ALEKGASL 99 (356)
T ss_pred HHHHHHHh
Confidence 55555543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0079 Score=58.88 Aligned_cols=242 Identities=19% Similarity=0.188 Sum_probs=160.5
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCChh--hHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHH
Q 043060 311 HTSDYKEALMLFRQMLQSNIEPNDV--TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388 (707)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 388 (707)
-.|+++.|.+-|+.|... |... -+..+.-.--+.|+.+.+++.-+..-..-+. -.....+.+...+..|+++.
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~--l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ--LPWAARATLEARCAAGDWDG 206 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC--CchHHHHHHHHHHhcCChHH
Confidence 356666666666666542 2111 1222333334566777777776666655554 45567788888899999999
Q ss_pred HHHHHhcCC-----CCChH--HHHHHHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHH
Q 043060 389 AEQVFDGMG-----YKTLA--SWNAMISGLA---MHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQ 457 (707)
Q Consensus 389 A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~ 457 (707)
|+++.+.-. ++++. .--.|+.+-+ -..+...|...-.+..+ +.||-+ .-.....++.+.|++.++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 999987643 34433 2223333221 13456667776666666 788876 44455678899999999999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM----EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
+++.+-+ ..|.+..+... .+.|.|+. ++.-+++. .++|| ..+...+..+-...|++..|..-.+.+..
T Consensus 285 ilE~aWK---~ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 285 ILETAWK---AEPHPDIALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred HHHHHHh---cCCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 9999875 45665554322 23455553 33333332 45666 77778888899999999999999999999
Q ss_pred cCCCCchhHHHHHHHhhhc-CChhhHHHHHHHHhhC
Q 043060 533 LEPENPGAYVLLSNMYAGA-GRWDDVATIRTRLNDK 567 (707)
Q Consensus 533 ~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 567 (707)
..|. ...|..|+++-... |+-.++...+-+..+.
T Consensus 358 ~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 358 EAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9995 47899999997655 9999998887776654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.5e-05 Score=48.91 Aligned_cols=33 Identities=36% Similarity=0.671 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 434 (707)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888877
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00092 Score=58.80 Aligned_cols=124 Identities=17% Similarity=0.207 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--HHHHH
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDD----ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL--QHYGC 477 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~ 477 (707)
|..++..+ ..++...+...++++... .|+. .....+...+...|++++|...|+.+... ...|.. ...-.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 44445544 377778888888888774 3333 23334556677888888888888888764 222221 23445
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043060 478 MVDLLGRAGLFDEAEALLKTMEMK-PDAAIWTSLLGACRVHGRLELGESVAKHLL 531 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 531 (707)
|...+...|++++|+..++..... .....+...+..+...|+.++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 677788888999998888776322 235667778888888999999988888753
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0002 Score=60.58 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHHH
Q 043060 476 GCMVDLLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN---PGAYVLLSNM 547 (707)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 547 (707)
-.++..+.+.|++++|.+.|+.+ ...|+ ...+..+...+...|+++.|...++.++...|++ +.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444455555555555555554 12222 2344445555666666666666666666555543 3445556666
Q ss_pred hhhcCChhhHHHHHHHHhhCC
Q 043060 548 YAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~ 568 (707)
+.+.|++++|.+.++++.+..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHC
Confidence 666666666666666655543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.82 E-value=5e-05 Score=56.16 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=48.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 510 LLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 510 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+...+...|++++|+..++++++.+|+++.++..++.++...|++++|..+++++.+...
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456677888888888888888888888888888888888888888888888888876543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0002 Score=67.70 Aligned_cols=106 Identities=15% Similarity=0.108 Sum_probs=75.0
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A 523 (707)
..+.+++++|+..|..+++ -.+-|...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3455666677766666664 22235555666667777888888777766664 66776 77888999999999999999
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHhhhcCC
Q 043060 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 524 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 553 (707)
++.|+++++++|+|......|-.+-.+.+.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 999999999999887655555544444333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00064 Score=66.77 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=112.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH--HHHhccCCHHHHHHHHHHhHHhcCCCCChHH------------
Q 043060 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL--SACNHAGLLDIGRQYFNAMIQDYKISPKLQH------------ 474 (707)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~------------ 474 (707)
.++.-.|++++|.+.--..++ +.+... +..++ .++.-.++.+.|...|++.++ ..|+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilk--ld~~n~-~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILK--LDATNA-EALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHh--cccchh-HHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 345667888888777666665 333322 11222 233456677778877776542 3343322
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 475 -YGCMVDLLGRAGLFDEAEALLKTM-EMK-----PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 475 -~~~li~~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
+.--.+-..+.|++.+|.+.+.+. .+. |+...|.....+..+.|+.++|+.-.+++++++|.-..+|..-+++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 122234567899999999999885 444 4566777777888899999999999999999999988999999999
Q ss_pred hhhcCChhhHHHHHHHHhhCCC
Q 043060 548 YAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+...++|++|.+-+++..+...
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999877554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00044 Score=58.46 Aligned_cols=104 Identities=14% Similarity=0.130 Sum_probs=68.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 043060 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLG 512 (707)
Q Consensus 439 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 512 (707)
+..+...+...|++++|...|..+.+.+.-.+ ....+..+..++.+.|++++|.+.++.+ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555566666666666666654321111 1234555677777777887777777765 22333 456777788
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHH
Q 043060 513 ACRVHGRLELGESVAKHLLELEPENPGAYV 542 (707)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 542 (707)
.+...|+.+.|...++++++..|+++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 888889999999999999988888765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00055 Score=70.12 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=70.0
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 043060 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 445 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 522 (707)
.+...|++++|.+.|+.+++ ..+.+...|..+..+|.+.|++++|+..++++ .+.|+ ...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 34455666666666666654 22234556666666777777777777777765 45554 6677777778888888888
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHhhh
Q 043060 523 GESVAKHLLELEPENPGAYVLLSNMYAG 550 (707)
Q Consensus 523 A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 550 (707)
|+..++++++++|+++.....+..+..+
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888888888888877776666555433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0017 Score=69.52 Aligned_cols=142 Identities=15% Similarity=0.062 Sum_probs=82.6
Q ss_pred CCCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 043060 397 GYKTLASWNAMISGLAMH-----GKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470 (707)
Q Consensus 397 ~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 470 (707)
...|...|...+.+.... ++...|+.+|++.++ ..|+.. .+..+..++... ++..|
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~~ 394 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQP 394 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcCC
Confidence 345777888888775432 236789999999998 778764 333332222111 01111
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC---C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM---E-MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN 546 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~---~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 546 (707)
.. .+++.++.+..++. + ...++.+|.++.-.....|++++|...++++++++| +..+|..++.
T Consensus 395 ~~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~ 461 (517)
T PRK10153 395 LD------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGK 461 (517)
T ss_pred cc------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 10 01122222222221 1 122345666665555666777777777777777777 4567777777
Q ss_pred HhhhcCChhhHHHHHHHHhhCCC
Q 043060 547 MYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 547 ~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+|...|+.++|.+.+++....+.
T Consensus 462 ~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 462 VYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Confidence 77777777777777777766554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0012 Score=60.17 Aligned_cols=131 Identities=13% Similarity=0.146 Sum_probs=79.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD--DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 477 (707)
....+..+...+...|++++|+..|++..+....+. ...+..+...+.+.|++++|...+.+..+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 334566667777777888888888887776332222 235666666777777777777777776652 2223445555
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCC
Q 043060 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 553 (707)
+..+|...|+...+..-++.. ...+++|.+.++++++.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544332221 112577888888888888865 4455555544443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0006 Score=64.93 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=92.5
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---CChhHHHHHHHHHHccCCCCchhH
Q 043060 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVH---GRLELGESVAKHLLELEPENPGAY 541 (707)
Q Consensus 467 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~ 541 (707)
..+-|...|-.|...|.+.|+++.|..-|.+. .+.|| +..+..+..++... .+..++..+++++++++|.|..+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 34458899999999999999999999999986 55555 77888888777554 356789999999999999999999
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHhhCCCccCCcc
Q 043060 542 VLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGC 575 (707)
Q Consensus 542 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 575 (707)
..|+-.+...|++.+|...++.|.+.....+|..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 9999999999999999999999998776444433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00019 Score=53.01 Aligned_cols=61 Identities=30% Similarity=0.451 Sum_probs=52.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 478 MVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788999999999999997 56676 88999999999999999999999999999999874
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00054 Score=62.35 Aligned_cols=96 Identities=18% Similarity=0.154 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 473 QHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
..+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|.++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34566666777778888887777765 22222 45788888888899999999999999999999888888888888
Q ss_pred hhhcCC--------------hhhHHHHHHHHhhCC
Q 043060 548 YAGAGR--------------WDDVATIRTRLNDKG 568 (707)
Q Consensus 548 ~~~~g~--------------~~~a~~~~~~m~~~~ 568 (707)
|...|+ +++|.+++++..+.+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 888776 455666665555433
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.8e-05 Score=46.05 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=25.9
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHHHHCCC
Q 043060 96 VIWNNIIRGHSLSSSPVVAIKFYVRMILSGF 126 (707)
Q Consensus 96 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 126 (707)
++||.||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887763
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.14 Score=54.90 Aligned_cols=359 Identities=15% Similarity=0.120 Sum_probs=200.7
Q ss_pred HHHcCCCchHHHHHHHHH--------HHCCCCCCcccHHH-----HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 043060 104 GHSLSSSPVVAIKFYVRM--------ILSGFVPNTYTFPF-----ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTS 170 (707)
Q Consensus 104 ~~~~~g~~~~A~~~~~~m--------~~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 170 (707)
++.+.-++++-..+.+.. .+.|++.+..-|.. ++.-+...+.+..|.++-..+-..-... ..++..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHH
Confidence 344444555544444333 34566666655544 4566677788899999887764322122 567777
Q ss_pred HHHHHHhCC---ChhHHHHHHhcCCC--CCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCC---CHhhHHHHHHH
Q 043060 171 LINMYAQNG---ELESARLVFNKSSL--RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVP---NESTVVTVLSA 242 (707)
Q Consensus 171 li~~~~~~g---~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p---~~~t~~~ll~~ 242 (707)
...-+.+.. +-+.+..+=+++.. ...++|..+.+-..+.|+++-|..+++.=.. .....| +..-+...+.-
T Consensus 477 Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~-~~~qV~lLL~m~~~~~AL~k 555 (829)
T KOG2280|consen 477 WARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPR-SGEQVPLLLKMKDSSLALKK 555 (829)
T ss_pred HHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCC-ccchhHHHhccchHHHHHHH
Confidence 777777763 33344445555555 5778999999999999999999999876432 111111 33345566677
Q ss_pred HhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhhHHHHHHHHHhcCCHHHHHHH
Q 043060 243 CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK-RDVISWNVMIGGYTHTSDYKEALML 321 (707)
Q Consensus 243 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~ 321 (707)
+...|+.+...+++-.+.+.- +... .+.-..+...|..+|....+ .|..+ + ..+-+.++..+++..
T Consensus 556 aies~d~~Li~~Vllhlk~~~---~~s~------l~~~l~~~p~a~~lY~~~~r~~~~~~---l-~d~y~q~dn~~~~a~ 622 (829)
T KOG2280|consen 556 AIESGDTDLIIQVLLHLKNKL---NRSS------LFMTLRNQPLALSLYRQFMRHQDRAT---L-YDFYNQDDNHQALAS 622 (829)
T ss_pred HHhcCCchhHHHHHHHHHHHH---HHHH------HHHHHHhchhhhHHHHHHHHhhchhh---h-hhhhhcccchhhhhh
Confidence 777788777777766655431 1111 11112233445555544332 12111 1 111222222222222
Q ss_pred HHHH------hhcCCCCChhhHHhHHHHHhccCCchHHHHH----------HHHHHH-hCCCCCcHHHHhHHhhHHHhcC
Q 043060 322 FRQM------LQSNIEPNDVTFLSVLPACAYLGALDLGKWI----------HAYIDK-NHQKLNNVSLWTSLIDMYAKCG 384 (707)
Q Consensus 322 ~~~m------~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~----------~~~~~~-~~~~~~~~~~~~~li~~y~~~g 384 (707)
|..= ...|..|+. .....++++........+. .+.+.. .+....+. +.+--+.-+...|
T Consensus 623 ~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dl-Sl~dTv~~li~~g 698 (829)
T KOG2280|consen 623 FHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDL-SLHDTVTTLILIG 698 (829)
T ss_pred hhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccC-cHHHHHHHHHHcc
Confidence 2110 011223332 2333444444332211111 111111 12222122 2333445556678
Q ss_pred CHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
+..+|.++-.+.+-+|-..|-.-+.+++..+++++-+++-+.+. .+.-|.-...+|.+.|+.++|..++.+..
T Consensus 699 ~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~- 771 (829)
T KOG2280|consen 699 QNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG- 771 (829)
T ss_pred chHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC-
Confidence 88888888888888888888888888888888877666554432 24566777888888888888888887652
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 043060 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT 497 (707)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 497 (707)
|.+ -.+.+|.+.|++.+|.++--+
T Consensus 772 --~l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 772 --GLQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred --ChH-------HHHHHHHHhccHHHHHHHHHH
Confidence 111 467788888888888776443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00025 Score=67.00 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=82.1
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhh
Q 043060 479 VDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 556 (707)
.+-+.+.+++++|+..|.+. .+.|. .+.|..-..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 44567889999999999986 77775 88888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 043060 557 VATIRTRLNDKGM 569 (707)
Q Consensus 557 a~~~~~~m~~~~~ 569 (707)
|++.|++..+...
T Consensus 168 A~~aykKaLeldP 180 (304)
T KOG0553|consen 168 AIEAYKKALELDP 180 (304)
T ss_pred HHHHHHhhhccCC
Confidence 9999998876544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00056 Score=62.00 Aligned_cols=93 Identities=14% Similarity=-0.020 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 043060 472 LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN 546 (707)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 546 (707)
...|..++..+...|++++|+..|++. ...|+ ..+|..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455667777788889999999988886 33332 4588999999999999999999999999999998888888888
Q ss_pred Hhh-------hcCChhhHHHHHHHH
Q 043060 547 MYA-------GAGRWDDVATIRTRL 564 (707)
Q Consensus 547 ~~~-------~~g~~~~a~~~~~~m 564 (707)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788888666665544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.60 E-value=8e-05 Score=45.40 Aligned_cols=31 Identities=32% Similarity=0.714 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043060 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNI 330 (707)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (707)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887763
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0069 Score=53.00 Aligned_cols=133 Identities=15% Similarity=0.151 Sum_probs=102.2
Q ss_pred CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHH
Q 043060 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI-SPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD---AAI 506 (707)
Q Consensus 432 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~ 506 (707)
..|....-..|..+....|+..+|...|++... |+ ..|....-.+.++....+++.+|...++++ ...|+ +..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 556666666778888888888888888888765 44 446677777788888888999998888885 22232 334
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 507 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
-..+...+...|+.+.|+..|+.++...| ++..-...+..+.+.|+.+++..-+..+.+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 45677889999999999999999999888 5577778888999999999888766665543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0032 Score=62.12 Aligned_cols=134 Identities=18% Similarity=0.202 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA-CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 480 (707)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888888888999999999998532 2233344444444 33457777799999999885 4457778889999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 481 LLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
.+.+.|+.+.|..+|++. ..-|. ...|...+..-.+.|+++....+.+++.+.-|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999996 33333 35999999999999999999999999999888743
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.12 Score=51.56 Aligned_cols=108 Identities=18% Similarity=0.176 Sum_probs=76.4
Q ss_pred hHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHH
Q 043060 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453 (707)
Q Consensus 374 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 453 (707)
+..+.-+...|+...|.++..+..-++-.-|-..+.+|+..+++++-.++... +-.++-|-.++.+|.+.|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455556678888888888888778888888888888888888766654321 223467777888888888888
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043060 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498 (707)
Q Consensus 454 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 498 (707)
+|..+...+. + ..-+.+|.++|++.+|.+.--+.
T Consensus 255 eA~~yI~k~~-------~----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 255 EASKYIPKIP-------D----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHhCC-------h----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 8887776531 1 34567788888888887765543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0013 Score=52.45 Aligned_cols=62 Identities=26% Similarity=0.302 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEP 535 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 535 (707)
.+..+...+...|++++|.+.+++. ...|+ ..++..+...+...|+++.|...++++++..|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3444445555555555555555543 22222 34555566666666666666666666665554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00014 Score=54.29 Aligned_cols=55 Identities=24% Similarity=0.426 Sum_probs=44.6
Q ss_pred HhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
...|++++|++.++++++.+|+++.++..++.+|.+.|++++|.++++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678888888888888888888888888888888888888888888887766443
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.16 Score=51.18 Aligned_cols=61 Identities=21% Similarity=0.228 Sum_probs=40.6
Q ss_pred HHHHHHHHHH--HHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 504 AAIWTSLLGA--CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 504 ~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
...-|.|.+| +..+|++.++.-...=+.+..| ++.+|..++-++....++++|..++..+.
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 3344555544 3457777777666666666777 66777777777777777777777776654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0011 Score=57.40 Aligned_cols=89 Identities=10% Similarity=0.075 Sum_probs=78.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChh
Q 043060 478 MVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 555 (707)
..--+...|++++|..+|+-+ -..| +..-|..|...|-..++++.|...|..+..++++||..+...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456899999999999986 2223 46678999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhh
Q 043060 556 DVATIRTRLND 566 (707)
Q Consensus 556 ~a~~~~~~m~~ 566 (707)
.|+..|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00039 Score=52.74 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=50.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 511 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
...+...++++.|.++++++++++|+++..+..++.+|.+.|++++|.+.+++..+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35677888999999999999999999999999999999999999999999988886554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00049 Score=53.90 Aligned_cols=77 Identities=14% Similarity=0.296 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHH
Q 043060 414 HGKADKALSLFSRMIGEGLQP---DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFD 489 (707)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 489 (707)
.|+++.|+.+|+++.+. .| +...+..+..++.+.|++++|..+++.. ...| +....-.+..+|.+.|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~--~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL--DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHHH--HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HH
T ss_pred CccHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHH
Confidence 45566666666666652 23 2223333555555566666666555541 1111 1122223345555555555
Q ss_pred HHHHHHH
Q 043060 490 EAEALLK 496 (707)
Q Consensus 490 ~A~~~~~ 496 (707)
+|++.++
T Consensus 76 eAi~~l~ 82 (84)
T PF12895_consen 76 EAIKALE 82 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00056 Score=51.17 Aligned_cols=65 Identities=20% Similarity=0.246 Sum_probs=56.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-ChhHHHHHHHHHHccCC
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHG-RLELGESVAKHLLELEP 535 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~p 535 (707)
+...|..+...+.+.|++++|+..|++. ...|+ ...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567778888899999999999999885 55676 788999999999999 79999999999999987
|
... |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.36 Score=53.04 Aligned_cols=99 Identities=11% Similarity=0.119 Sum_probs=50.0
Q ss_pred cCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHH
Q 043060 75 SPFGDLSYALLVFETIRE---PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151 (707)
Q Consensus 75 ~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 151 (707)
.+.|+.++|..+++.... .|..+...+-..|...++.++|..+|++.... -|+..-...+..++.+.+++.+-.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666655555432 24455555556666666666666666655543 3555555555555555555544333
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHH
Q 043060 152 IHAHVLKLGLESDPFVHTSLINMYA 176 (707)
Q Consensus 152 ~~~~~~~~g~~~~~~~~~~li~~~~ 176 (707)
.--++-+ .++-+++.+-++++.+.
T Consensus 132 aa~~LyK-~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 132 AALQLYK-NFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHH-hCCcccchHHHHHHHHH
Confidence 3333333 12333444444444443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.004 Score=56.37 Aligned_cols=63 Identities=10% Similarity=0.097 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD--DITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
..|..++..+...|++++|+..|++.......|. ..++..+...+...|++++|...++...+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3556666666666777777777777665321211 12455555556666666666666655543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0003 Score=52.52 Aligned_cols=61 Identities=28% Similarity=0.436 Sum_probs=35.7
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 043060 484 RAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544 (707)
Q Consensus 484 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 544 (707)
..|++++|+++|+++ ...| +..++..++..|.+.|++++|...++++...+|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 456666666666664 3334 355566666666666666666666666666666654444443
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.017 Score=50.04 Aligned_cols=95 Identities=7% Similarity=0.023 Sum_probs=70.2
Q ss_pred HHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHH
Q 043060 371 SLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSAC 446 (707)
Q Consensus 371 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 446 (707)
...-.+...+...|++++|.++|+-.. ..+..-|-.|..++...|++++|+..|..... +.||. ..+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHH
Confidence 334455566667888888888888653 33566788888888888888888888888887 44544 4777777788
Q ss_pred hccCCHHHHHHHHHHhHHhcC
Q 043060 447 NHAGLLDIGRQYFNAMIQDYK 467 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~ 467 (707)
...|+.+.|++.|+..+...+
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhc
Confidence 888888888888887776443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.013 Score=58.20 Aligned_cols=91 Identities=13% Similarity=0.211 Sum_probs=48.1
Q ss_pred Hhcc-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhCC---CC-C----CH-HHHHHHH
Q 043060 446 CNHA-GLLDIGRQYFNAMIQDYKISPK----LQHYGCMVDLLGRAGLFDEAEALLKTME---MK-P----DA-AIWTSLL 511 (707)
Q Consensus 446 ~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~-p----~~-~~~~~ll 511 (707)
|... |++++|.+.|+....-+..... ...+..+...+.+.|++++|.++|++.. .. | +. ..+...+
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~ 203 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI 203 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 3344 5555555555554443222221 1234456667778888888888887751 11 1 11 1222233
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCC
Q 043060 512 GACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
-.+...||...|.+.+++....+|.
T Consensus 204 l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 204 LCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3455678888888888888877764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.35 Score=51.39 Aligned_cols=180 Identities=14% Similarity=0.093 Sum_probs=94.9
Q ss_pred CCCcccHHHHHHHHhccCChHHHHHHHHHHHHh-CC--------CCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCee
Q 043060 127 VPNTYTFPFILKSCAKISAISEGKQIHAHVLKL-GL--------ESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAV 197 (707)
Q Consensus 127 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~--------~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~ 197 (707)
.|.+..|..+.......-.++.|+..|-..... |+ -.+.....+=+.+| .|++++|++++-.+..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 466666666665555444555555544322111 11 00111112222332 4788888888887777664
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 043060 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM 277 (707)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 277 (707)
.|..+.+.|++-...++++.=-. +..-..-...+..+...++....++.|.+.+..-.. ...++++
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ec 831 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIEC 831 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHH
Confidence 35566677777777777654210 000011123556666666666666666666554321 1234555
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043060 278 YSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQ 324 (707)
Q Consensus 278 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 324 (707)
|.+..++++-+.+-+.+++. ......|...+.+.|.-++|.+.|-+
T Consensus 832 ly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHh
Confidence 55555666655555555543 33445566677777777777666543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00021 Score=44.38 Aligned_cols=32 Identities=34% Similarity=0.647 Sum_probs=30.4
Q ss_pred HHHHHccCCCCchhHHHHHHHhhhcCChhhHH
Q 043060 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558 (707)
Q Consensus 527 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 558 (707)
|+++++++|+|+.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0073 Score=52.86 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=93.6
Q ss_pred hHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--
Q 043060 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM--E-MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE-- 536 (707)
Q Consensus 462 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~-- 536 (707)
..++..+.|++..--.|.+.+.+.|+..||...|++. + +--|......+..+....++...|...++.+.+..|.
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 3344466788888889999999999999999999996 3 4457888899999999999999999999999998874
Q ss_pred CchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.|.....++..|...|+.++|+..|+...+.-.
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 677889999999999999999999999887544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0097 Score=63.78 Aligned_cols=102 Identities=17% Similarity=0.131 Sum_probs=64.9
Q ss_pred CCCChHHHHHHHHHHHH--cC---CHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc--------CChhHHHHHHHHHHc
Q 043060 468 ISPKLQHYGCMVDLLGR--AG---LFDEAEALLKTM-EMKPD-AAIWTSLLGACRVH--------GRLELGESVAKHLLE 532 (707)
Q Consensus 468 ~~p~~~~~~~li~~~~~--~g---~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~--------g~~~~A~~~~~~~~~ 532 (707)
.+.+...|.+.+.+... .+ ..+.|..+|++. ...|+ ...|..+..++... +++..+.+.++++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 33455555555544322 22 255666666664 55666 44444443333221 234455666666655
Q ss_pred c--CCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 533 L--EPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 533 ~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+ +|.++.+|..++-.+...|++++|...+++..+.+.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p 451 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM 451 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 4 677888999999999899999999999999998774
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0024 Score=62.64 Aligned_cols=128 Identities=13% Similarity=0.052 Sum_probs=86.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHH---hHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCC-CCHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNA---MIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-------EMK-PDAA 505 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~-p~~~ 505 (707)
.|..|.+.|.-.|+++.|+...+. +.+.+|-.. ....++.+.+++.-.|+++.|.+.++.. +-+ -...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555566667888888776653 233344433 2346777888888888888888887763 211 1244
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcc----C--CCCchhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 506 IWTSLLGACRVHGRLELGESVAKHLLEL----E--PENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 506 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
+.-+|...|....+++.|+..+.+-+.+ + .....++..|+++|...|..++|..+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5567888888888888888887766543 2 2234578888899988888888887766554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0052 Score=49.23 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHCCC-CCCcccHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCChhHHH
Q 043060 99 NNIIRGHSLSSSPVVAIKFYVRMILSGF-VPNTYTFPFILKSCAKIS--------AISEGKQIHAHVLKLGLESDPFVHT 169 (707)
Q Consensus 99 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 169 (707)
...|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.+++. .+...+.+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 899999999999987653 2446788999999999999999999
Q ss_pred HHHHHHHh
Q 043060 170 SLINMYAQ 177 (707)
Q Consensus 170 ~li~~~~~ 177 (707)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.042 Score=54.47 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIG 429 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (707)
+..++..+.+.|++++|+++|++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444555556666666666665554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0054 Score=51.13 Aligned_cols=88 Identities=18% Similarity=0.126 Sum_probs=60.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC---CchhHHHHHHHhh
Q 043060 478 MVDLLGRAGLFDEAEALLKTM---EMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPE---NPGAYVLLSNMYA 549 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 549 (707)
+..++-..|+.++|+.+|++. +.... ...+-.+.+.+...|++++|..++++.++..|+ +......++-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344566677777777777764 22222 445666777888888888888888888877676 5566666777778
Q ss_pred hcCChhhHHHHHHHHh
Q 043060 550 GAGRWDDVATIRTRLN 565 (707)
Q Consensus 550 ~~g~~~~a~~~~~~m~ 565 (707)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8888888877665433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.032 Score=53.61 Aligned_cols=174 Identities=14% Similarity=0.118 Sum_probs=99.0
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCC---ChH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHH
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMGYK---TLA---SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI--TFVGVLS 444 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~ 444 (707)
.-.....+.+.|++++|.+.|+.+... +.. ..-.++.+|.+.+++++|...|++..+ ..|+.. -+...+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHH
Confidence 334455556677777777777776432 111 123345666777777777777777777 334332 3333333
Q ss_pred HHhc--c---------------CC---HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH
Q 043060 445 ACNH--A---------------GL---LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA 504 (707)
Q Consensus 445 a~~~--~---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 504 (707)
+.+. . .+ ..+|...|+.+++.+ |+ ..-..+|...+..+...- .
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~l-a 175 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRL-A 175 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHH-H
Confidence 3221 0 01 123334444444332 22 222333333222221000 0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPEN---PGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
.--..+..-|.+.|++..|..-++.+++.-|+. +.+...+..+|.+.|..++|.++...+.
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 011134556888999999999999999987764 4577788999999999999998877654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.25 Score=49.43 Aligned_cols=111 Identities=14% Similarity=0.188 Sum_probs=86.9
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043060 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRV 516 (707)
Q Consensus 437 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 516 (707)
.+.+..+.-|...|+...|.++-.+ +++ |+...|...+.+|+..|+|++-.++... +-.+.-|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 3556667777888988888776554 455 7888999999999999999998887654 3346888999999999
Q ss_pred cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
.|+..+|.....+ ..+..-..+|.++|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999888776 12256678899999999998764443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0038 Score=60.41 Aligned_cols=93 Identities=13% Similarity=0.128 Sum_probs=53.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHH
Q 043060 475 YGCMVDLLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN---PGAYVLLSN 546 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 546 (707)
|..-+..+.+.|++++|...|+.+ ...|+ ...+-.++..+...|+++.|...|+.+++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333344444456666666666554 22333 2344556666666667777777776666655543 345555566
Q ss_pred HhhhcCChhhHHHHHHHHhhC
Q 043060 547 MYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 547 ~~~~~g~~~~a~~~~~~m~~~ 567 (707)
+|...|++++|.++++++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666667777777776666553
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0058 Score=60.30 Aligned_cols=129 Identities=9% Similarity=0.135 Sum_probs=100.7
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 043060 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR-AGLFDEAEALLKTM--EMKPDAAIWTSLLGA 513 (707)
Q Consensus 437 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~ 513 (707)
.+|..++...-+.+.++.|+.+|..+.+. ...+...|.....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888899999999999999999753 22344556666666445 56666699999986 333468899999999
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCc---hhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 514 CRVHGRLELGESVAKHLLELEPENP---GAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
+...|+.+.|..+|++++..-|.+. ..|...++.-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766543 58889999999999999999999998764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.002 Score=65.34 Aligned_cols=63 Identities=19% Similarity=0.000 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch---hHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG---AYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 504 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
...|+.+..+|...|++++|+..++++++++|++.. +|+.++.+|...|+.++|+..+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555543 255555555555555555555555554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.041 Score=54.57 Aligned_cols=88 Identities=11% Similarity=0.051 Sum_probs=46.0
Q ss_pred ccCCHHHHHHHHHHhHHh--cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 043060 448 HAGLLDIGRQYFNAMIQD--YKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A 523 (707)
+.|.+..|.+.|.+.+.. ....|+...|........+.|++++|+.--++. .+.|. ...+..-..++...+++++|
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544311 012233344555555566777777777766554 33322 22222223344556777777
Q ss_pred HHHHHHHHccCC
Q 043060 524 ESVAKHLLELEP 535 (707)
Q Consensus 524 ~~~~~~~~~~~p 535 (707)
.+-++++.+...
T Consensus 341 V~d~~~a~q~~~ 352 (486)
T KOG0550|consen 341 VEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHhhcc
Confidence 777777776654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0012 Score=43.99 Aligned_cols=42 Identities=31% Similarity=0.568 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN 546 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 546 (707)
.+|..+..++...|++++|+++++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468889999999999999999999999999999999888764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.021 Score=47.69 Aligned_cols=92 Identities=16% Similarity=0.202 Sum_probs=63.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHH
Q 043060 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDD--ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLL 482 (707)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 482 (707)
.+..++-..|+.++|+.+|++....|..... ..+..+.+++...|++++|..+++.....+.-.+ +......+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3456677789999999999999888876553 3677778888888889998888888876432211 222223344566
Q ss_pred HHcCCHHHHHHHHHh
Q 043060 483 GRAGLFDEAEALLKT 497 (707)
Q Consensus 483 ~~~g~~~~A~~~~~~ 497 (707)
...|+.++|++.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 778888888776644
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0031 Score=47.74 Aligned_cols=64 Identities=27% Similarity=0.415 Sum_probs=53.5
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHH
Q 043060 480 DLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL 543 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 543 (707)
..|.+.+++++|.+.++++ ...|+ ...|......+...|++++|.+.++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 5678889999999999886 56665 7788888899999999999999999999999987655443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.019 Score=56.58 Aligned_cols=153 Identities=12% Similarity=0.028 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----HHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHh---cCC-CCChH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRM----IGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQD---YKI-SPKLQ 473 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~-~p~~~ 473 (707)
.|..|...|.-.|+++.|+..-+.- ++-|-+.. ...+..+.+++.-.|+++.|.+.|+....- .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3444555555566666666544322 12222221 225556666666677777777666543210 011 12233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccC--CCCc----h
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM-------E-MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELE--PENP----G 539 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~----~ 539 (707)
..-+|.+.|.-...+++|+..+.+- + .--....+-+|..++...|..++|...+++.++.. ..++ .
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 4455667777777777777776652 1 11235667788999999999999988888777532 2222 2
Q ss_pred hHHHHHHHhhhcCChh
Q 043060 540 AYVLLSNMYAGAGRWD 555 (707)
Q Consensus 540 ~~~~l~~~~~~~g~~~ 555 (707)
.-..|++.-...|.-+
T Consensus 357 ar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 357 ARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhHHHHHHhCCCc
Confidence 3445555555555443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.017 Score=55.94 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=56.2
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCh
Q 043060 447 NHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM----EMKPD-AAIWTSLLGACRVHGRL 520 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~g~~ 520 (707)
.+.|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.+ +..|. ...+..++..+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334555555555555554331111 0133445666667777777777776665 22222 45555666777788899
Q ss_pred hHHHHHHHHHHccCCCCch
Q 043060 521 ELGESVAKHLLELEPENPG 539 (707)
Q Consensus 521 ~~A~~~~~~~~~~~p~~~~ 539 (707)
+.|...++++++..|++..
T Consensus 234 ~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHHHCcCCHH
Confidence 9999999998888887653
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0084 Score=59.53 Aligned_cols=89 Identities=16% Similarity=0.118 Sum_probs=71.8
Q ss_pred HHHHHcCCHHHHHHHHHhC--------CCC---------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHH
Q 043060 480 DLLGRAGLFDEAEALLKTM--------EMK---------PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~--------~~~---------p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 542 (707)
+.|.+.|++..|...|++. +.. .-..+++.|...+.+.+++..|++...++++++|+|..+.+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 3455666666666655552 111 12457788888899999999999999999999999999999
Q ss_pred HHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 543 LLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 543 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
.-+.+|...|.++.|+..|+++.+..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999998743
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.017 Score=59.43 Aligned_cols=116 Identities=11% Similarity=0.104 Sum_probs=77.3
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK------TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 442 (707)
+......+++......+++++..++.+.... -..+..++|..|.+.|..++++.+++.=...|+-||..||+.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4445555666666666777777777665321 1224457788888888888888888877778888888888888
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc
Q 043060 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485 (707)
Q Consensus 443 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 485 (707)
+..+.+.|++..|.++...|... +...+..++..-+..+.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 88888888888888877776654 4444545554434444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.7 Score=46.73 Aligned_cols=408 Identities=12% Similarity=0.097 Sum_probs=217.5
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCC---eehHHHHHHHHHhCCChhHHHHHHHhCccccC
Q 043060 151 QIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRD---AVSYTALITGYASRGYLDDARQLFDEMPIREE 227 (707)
Q Consensus 151 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 227 (707)
++-+.+.+. +.|...|-.||.-|...|..++.++++++|..+- ..+|...+++-....++.....+|.+-+. .
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~--k 105 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK--K 105 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh--h
Confidence 555555433 6778899999999999999999999999998773 45799999998899999999999998854 3
Q ss_pred CCCCCHhhHHHHHHHHhccCCch------HHHHHHHHHHH-cCCCc-hhHHHHHHHHHH---HhcC------CHHHHHHH
Q 043060 228 NFVPNESTVVTVLSACAHMGSLE------LGNWVCSLIEG-HGLGS-NLHVTNALIDMY---SKCG------DLVKARDL 290 (707)
Q Consensus 228 ~~~p~~~t~~~ll~~~~~~g~~~------~a~~~~~~~~~-~g~~~-~~~~~~~li~~~---~~~g------~~~~A~~~ 290 (707)
.+ +...|..-+.--.+....- ...+.++.++. .++.| ....|+..++.. -..| +++..++.
T Consensus 106 ~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 SL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred hc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 33 3344444444333333221 12344555444 23443 233455544432 2223 45556667
Q ss_pred HHhcCCC----------ChhhHHHHHHHHHh-------cCCHHHHHHHHHHHhh--cCCCC----ChhhHHhHHH-----
Q 043060 291 FESIEKR----------DVISWNVMIGGYTH-------TSDYKEALMLFRQMLQ--SNIEP----NDVTFLSVLP----- 342 (707)
Q Consensus 291 ~~~~~~~----------~~~~~~~li~~~~~-------~g~~~~A~~~~~~m~~--~g~~p----~~~t~~~ll~----- 342 (707)
|.++..- |-..|..-++.... .--+-.|.+.+++... .|... +..|++.+-+
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 7776642 11222222221111 1113455566665543 23221 2223322211
Q ss_pred ------HHhcc-----CC--chHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC--CCh------
Q 043060 343 ------ACAYL-----GA--LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY--KTL------ 401 (707)
Q Consensus 343 ------~~~~~-----~~--~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~------ 401 (707)
--... ++ .....-+|++++..-+- ...+|--.-.-+...++-+.|....+.... |+.
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~--~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse 341 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYY--AEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSE 341 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHH
Confidence 10000 00 01111122333222222 333343333344455666777776654321 110
Q ss_pred ---------H---HHHHHHHHHHH---cCCHHHHHHH------HHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHH
Q 043060 402 ---------A---SWNAMISGLAM---HGKADKALSL------FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN 460 (707)
Q Consensus 402 ---------~---~~~~li~~~~~---~g~~~~A~~~------~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 460 (707)
. +|..++..+.+ .++.+.+-.. ..+..-....--...|...+++-.+..-++.|+.+|-
T Consensus 342 ~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~ 421 (660)
T COG5107 342 YYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFI 421 (660)
T ss_pred HHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 0 12222222211 1111111110 0111000011112345556666677777888888888
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHccCC--C
Q 043060 461 AMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT-MEMKPDA-AIWTSLLGACRVHGRLELGESVAKHLLELEP--E 536 (707)
Q Consensus 461 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p--~ 536 (707)
+..+..-+.+++..+++++.-++ .|+..-|..+|+- |..-||. ..-.-.+.-+...++-+.|..+|+..++.-. .
T Consensus 422 k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q 500 (660)
T COG5107 422 KLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQ 500 (660)
T ss_pred HHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhh
Confidence 88765225678888888887654 6777888888876 4434563 3334566666777888888888886654221 2
Q ss_pred CchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 537 NPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
-...|..+++--..-|+...+..+-++|.+.
T Consensus 501 ~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 501 LKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred hhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 2457777777777778887777776666654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.19 Score=46.88 Aligned_cols=229 Identities=11% Similarity=0.042 Sum_probs=120.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHH-hccCC-ch-HHHHHHHHHHHhCCCCCcHHHHhHH
Q 043060 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC-AYLGA-LD-LGKWIHAYIDKNHQKLNNVSLWTSL 376 (707)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~-~~-~a~~~~~~~~~~~~~~~~~~~~~~l 376 (707)
..|+.-+..+.+....++|..-+....+.+ .||-. |-..-..+ .+.|. +. ..+-+|..+.+.-..+ +++|
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnp-----qesL 142 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNP-----QESL 142 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCCc-----HHHH
Confidence 346666666777777777665555443321 11110 00000000 01121 11 2234555555543333 6777
Q ss_pred hhHHHhcCCHHHHHHHHhcCCC--CChHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 043060 377 IDMYAKCGNIKAAEQVFDGMGY--KTLAS--------WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446 (707)
Q Consensus 377 i~~y~~~g~~~~A~~~~~~~~~--~~~~~--------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 446 (707)
...|.-..-+++-...|+.-.. ..+.. -+.++..+.-+|.+.-.+.++++.++..-+-+......|.+.-
T Consensus 143 dRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~ 222 (366)
T KOG2796|consen 143 DRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS 222 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 7777766666666666654332 22333 3556666666778888888888888855455666667777777
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHHHcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCC
Q 043060 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYG-----CMVDLLGRAGLFDEAEALLKTMEMK-P-DAAIWTSLLGACRVHGR 519 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~ll~~~~~~g~ 519 (707)
.+.|+.+.|..+|+...+.. -..+....+ .+...|.-++++.+|...+.++... | |+..-|.=.-...-.|+
T Consensus 223 MQ~GD~k~a~~yf~~vek~~-~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~ 301 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVT-QKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK 301 (366)
T ss_pred HhcccHHHHHHHHHHHHHHH-hhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH
Confidence 88888888888888665431 112222222 2223344455566666666555221 2 23333333323334455
Q ss_pred hhHHHHHHHHHHccCCC
Q 043060 520 LELGESVAKHLLELEPE 536 (707)
Q Consensus 520 ~~~A~~~~~~~~~~~p~ 536 (707)
...|.+..+.+++..|.
T Consensus 302 l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHhccCCc
Confidence 66666666666665553
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.012 Score=60.61 Aligned_cols=117 Identities=12% Similarity=0.182 Sum_probs=73.9
Q ss_pred CchhhhhhhchhhcccCCCChHHHHHHHhcCCC-CC-----cchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccH
Q 043060 60 NTQFALSKLIEICAVSPFGDLSYALLVFETIRE-PN-----QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTF 133 (707)
Q Consensus 60 ~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 133 (707)
-+......++ +......+++++..++-+... |+ ..+..++|+.|...|..+++++++..=...|+-||.+|+
T Consensus 64 vS~~dld~fv--n~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 64 VSSLDLDIFV--NNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CcHHHHHHHH--hhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3444455555 555555666666666655542 11 123457777777777777777777777777777777777
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 043060 134 PFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQN 178 (707)
Q Consensus 134 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 178 (707)
+.|+..+.+.|++..|.++...|...+...++.++..-+..+.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777776666555555555444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.06 Score=56.28 Aligned_cols=229 Identities=17% Similarity=0.171 Sum_probs=124.4
Q ss_pred CCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHH
Q 043060 230 VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309 (707)
Q Consensus 230 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 309 (707)
.|..+.+.+-+..+...|.+++|.++-.. .....-|..|..-....=+++-|++.|.++.
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iacl------gVv~~DW~~LA~~ALeAL~f~~ARkAY~rVR-------------- 612 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACL------GVTDTDWRELAMEALEALDFETARKAYIRVR-------------- 612 (1081)
T ss_pred ecccccccccchhhhhccchhhhhccccc------ceecchHHHHHHHHHhhhhhHHHHHHHHHHh--------------
Confidence 34444455555556666666665544321 1122234444443344444555555444432
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHH
Q 043060 310 THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389 (707)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 389 (707)
.-.+-+.+.-+++|++.|-.|+.... ...|+..|.+.+|-.+|.. .|.+ |.-+.+|.....++.|
T Consensus 613 --dl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e-------nRAlEmyTDlRMFD~a 677 (1081)
T KOG1538|consen 613 --DLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE-------NRALEMYTDLRMFDYA 677 (1081)
T ss_pred --ccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch-------hhHHHHHHHHHHHHHH
Confidence 22233445556788888888887653 3446677888887777653 3443 3445666666667777
Q ss_pred HHHHhcCCCC-------ChHHH-------HHHHHHHHHcCCHHHHHHHHH------HHHHCCCC---CCHhHHHHHHHHH
Q 043060 390 EQVFDGMGYK-------TLASW-------NAMISGLAMHGKADKALSLFS------RMIGEGLQ---PDDITFVGVLSAC 446 (707)
Q Consensus 390 ~~~~~~~~~~-------~~~~~-------~~li~~~~~~g~~~~A~~~~~------~m~~~g~~---p~~~t~~~ll~a~ 446 (707)
.+++...... .-..| .+....+...|+.++|+.+.- -+.+-+-+ .+..+...+..-+
T Consensus 678 QE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~yl 757 (1081)
T KOG1538|consen 678 QEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYL 757 (1081)
T ss_pred HHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHH
Confidence 7666543211 00112 122333455566666655421 11111112 2233455555555
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC
Q 043060 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTME-MKPD 503 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~ 503 (707)
.+...+.-|-++|.+|-. ...++++....+++++|..+-++.+ ..||
T Consensus 758 k~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~d 805 (1081)
T KOG1538|consen 758 KKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDD 805 (1081)
T ss_pred hhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccc
Confidence 566677778888877732 2357788888899999999888874 3444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=1.1 Score=47.97 Aligned_cols=205 Identities=10% Similarity=0.080 Sum_probs=107.9
Q ss_pred CCChhHHHHHHHHHHhCCChhHHHHHHhcCCCC-Ce------------ehHHHHHHHHHhCCChhHHHHHHHhCccccCC
Q 043060 162 ESDPFVHTSLINMYAQNGELESARLVFNKSSLR-DA------------VSYTALITGYASRGYLDDARQLFDEMPIREEN 228 (707)
Q Consensus 162 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 228 (707)
.|.+..|..|.......-.++.|+..|-+...- .+ ..-.+=|.+| -|++++|.++|-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 577888888888777777888888887554321 11 0111112222 478888888888774311
Q ss_pred CCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCch----hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHH
Q 043060 229 FVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN----LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNV 304 (707)
Q Consensus 229 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 304 (707)
..+...-+.|++-...+++. .-|-..| ...++.+.+.++....+++|.+.|..-... ..
T Consensus 765 ---------LAielr~klgDwfrV~qL~r---~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~ 827 (1189)
T KOG2041|consen 765 ---------LAIELRKKLGDWFRVYQLIR---NGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----EN 827 (1189)
T ss_pred ---------hhHHHHHhhhhHHHHHHHHH---ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----Hh
Confidence 12233344455544433332 1111111 235566666666666666666666543211 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcC
Q 043060 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384 (707)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 384 (707)
.+.+|-+..++++-..+-+.+ +-|...+-.+..++.+.|.-++|.+.|-. .+.. .+-+..+....
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p-------kaAv~tCv~Ln 892 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP-------KAAVHTCVELN 892 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc-------HHHHHHHHHHH
Confidence 344444444444433333332 33444455556666777766666555432 1211 23455666677
Q ss_pred CHHHHHHHHhcCCCCChH
Q 043060 385 NIKAAEQVFDGMGYKTLA 402 (707)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~ 402 (707)
+|.+|.++-++..-|.+.
T Consensus 893 QW~~avelaq~~~l~qv~ 910 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQLPQVQ 910 (1189)
T ss_pred HHHHHHHHHHhccchhHH
Confidence 777777777766555443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.028 Score=45.19 Aligned_cols=80 Identities=14% Similarity=0.173 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHhccC--------CHHHHHHHHHHhHHhcCCCCChHH
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIGEGL-QPDDITFVGVLSACNHAG--------LLDIGRQYFNAMIQDYKISPKLQH 474 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~ 474 (707)
-...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+..+.. .+-+.+.+|+.|... +++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence 34456666677999999999999999999 899999999998876532 344566778888765 78888888
Q ss_pred HHHHHHHHHH
Q 043060 475 YGCMVDLLGR 484 (707)
Q Consensus 475 ~~~li~~~~~ 484 (707)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.002 Score=49.53 Aligned_cols=63 Identities=16% Similarity=0.246 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcc----CCC---CchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 504 AAIWTSLLGACRVHGRLELGESVAKHLLEL----EPE---NPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 504 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
..+++.+...+...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 446667777777777777777777777653 222 234677777888888888888887776543
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.22 Score=51.17 Aligned_cols=159 Identities=13% Similarity=0.129 Sum_probs=108.1
Q ss_pred HHH--HHHHHHHHHc-----CCHHHHHHHHHHHHH-CCCCCCHh-HHHHHHHHHh---------ccCCHHHHHHHHHHhH
Q 043060 402 ASW--NAMISGLAMH-----GKADKALSLFSRMIG-EGLQPDDI-TFVGVLSACN---------HAGLLDIGRQYFNAMI 463 (707)
Q Consensus 402 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~ 463 (707)
..| ..++.+.... ...+.|+.+|.+... +.+.|+.. .|..+..++. ......+|.+.-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 5566665442 235678889999882 22677755 4433333222 1234556677776666
Q ss_pred HhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 043060 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541 (707)
Q Consensus 464 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 541 (707)
+ --+-|......+..++.-.|+++.|..+|++. ...|| ..+|......+.-.|+.++|.+.++++++++|....+-
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 5 33347777777888888888899999999987 67787 77788888888889999999999999999999765444
Q ss_pred H--HHHHHhhhcCChhhHHHHHHH
Q 043060 542 V--LLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 542 ~--~l~~~~~~~g~~~~a~~~~~~ 563 (707)
. ..++.|+..+ .++|++++-+
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHhh
Confidence 4 3344566554 5677776643
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.028 Score=51.17 Aligned_cols=97 Identities=13% Similarity=0.225 Sum_probs=71.5
Q ss_pred HHHHhcC--CCCChHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc-------------
Q 043060 390 EQVFDGM--GYKTLASWNAMISGLAM-----HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA------------- 449 (707)
Q Consensus 390 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 449 (707)
...|+.. ..++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 45677777777777764 367777788889999999999999999999887542
Q ss_pred ---CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 043060 450 ---GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487 (707)
Q Consensus 450 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 487 (707)
.+-+-|+.+++.|.. +|+.||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234567778888854 5888888888888887776654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.22 Score=46.47 Aligned_cols=169 Identities=13% Similarity=0.073 Sum_probs=113.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC--C--------hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhH
Q 043060 271 TNALIDMYSKCGDLVKARDLFESIEKR--D--------VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSV 340 (707)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 340 (707)
++.|.+.|.-...+++-...|+.=..+ . ...-+.++..+...|.+.-.+.++.+.++...+-++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 455555555555555555555443221 2 223456677777788888888889988887666677777888
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCC----cHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHH
Q 043060 341 LPACAYLGALDLGKWIHAYIDKNHQKLN----NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAM 413 (707)
Q Consensus 341 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 413 (707)
.+.-.+.|+.+.+...++.+.+...... ...+.......|.-.+++..|...|.++.. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888889999999999987776533320 233333444456667788888888887754 356666666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 043060 414 HGKADKALSLFSRMIGEGLQPDDITFVG 441 (707)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 441 (707)
.|+..+|++..+.|.+ ..|...+-.+
T Consensus 299 lg~l~DAiK~~e~~~~--~~P~~~l~es 324 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQ--QDPRHYLHES 324 (366)
T ss_pred HHHHHHHHHHHHHHhc--cCCccchhhh
Confidence 7899999999999988 5666554443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.64 Score=44.72 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh-hH---HhHHHHHhccCCchHHHHHHHHHHHhCCCC
Q 043060 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV-TF---LSVLPACAYLGALDLGKWIHAYIDKNHQKL 367 (707)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 367 (707)
.....+.+.|++++|++.|+++...- |+.. .. -.+..++.+.++++.|...++..++..+..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 33444555666666666666666532 2221 11 122334455555555555555555554443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.3 Score=49.36 Aligned_cols=160 Identities=19% Similarity=0.149 Sum_probs=89.3
Q ss_pred HHhhHHHhcCCHHHHHHHHhcCCCC---C----hHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 043060 375 SLIDMYAKCGNIKAAEQVFDGMGYK---T----LASWNAMISGLAM---HGKADKALSLFSRMIGEGLQPDDITFVGVLS 444 (707)
Q Consensus 375 ~li~~y~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 444 (707)
.|+-.|-...+++...++++.+... + ...-...+-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444466666666666666665432 1 1112223334445 6777777777777655555566666665555
Q ss_pred HHhc---------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH----HHHHHH---Hh-C------CCC
Q 043060 445 ACNH---------AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD----EAEALL---KT-M------EMK 501 (707)
Q Consensus 445 a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~-~------~~~ 501 (707)
.|-. ....++|...|.+. +.+.|+..+--.++.++...|... +..++- .. . .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 4421 22356666666644 344454433222333333444321 222222 11 1 112
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 043060 502 PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 502 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 537 (707)
.|-..+.+++.++.-.|+.+.|.+.+++++++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 355666789999999999999999999999998754
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.44 E-value=1.6 Score=46.19 Aligned_cols=182 Identities=14% Similarity=0.174 Sum_probs=122.2
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK---TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA 445 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 445 (707)
+...|...++.-.+.|+.+.+.-+|++..-+ =...|--.+.-....|+.+-|..++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 5667777888888888888888888876543 2235655555555668888888888777664333222222222223
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYKISPKL-QHYGCMVDLLGRAGLFDEAE---ALLKTM-EMKPDAAIWTSLLG-----ACR 515 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~-----~~~ 515 (707)
+...|+++.|..+++.+.+++ |+. ..-.--+....|.|..+.+. +++... +.+-+..+...+.- .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 456789999999999998753 543 33334566778899999888 555443 22222222222222 234
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCC
Q 043060 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 553 (707)
..++.+.|..++.++.+..|++...|..+++.....+-
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 46889999999999999999999999999888776653
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.14 Score=42.33 Aligned_cols=140 Identities=14% Similarity=0.186 Sum_probs=82.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 043060 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491 (707)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (707)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3456677777777776652 233455555554444555555555555554332222 23333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 492 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
..-+-.++ .+......-++....+|+-+.-.+++..+.+-+..+|.....++++|.+.|+..++.+++.+.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33333332 134455566788889999999999999988766668899999999999999999999999999999984
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=1.2 Score=44.22 Aligned_cols=273 Identities=17% Similarity=0.122 Sum_probs=128.4
Q ss_pred CChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHh--ccCCchHHHHHHHHHHHcCCCchhHH--HHHHHHHHHhcCCHH
Q 043060 210 GYLDDARQLFDEMPIREENFVPNESTVVTVLSACA--HMGSLELGNWVCSLIEGHGLGSNLHV--TNALIDMYSKCGDLV 285 (707)
Q Consensus 210 g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~--~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~ 285 (707)
|+-..|.++-.+.. .-+.-|...+..++.+-. -.|+.+.+++-|+.|... |.... ...|.----+.|..+
T Consensus 98 Gda~lARkmt~~~~---~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 98 GDASLARKMTARAS---KLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred CchHHHHHHHHHHH---hhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 44444544444431 123334444444544433 236666666666666532 11111 112222234567777
Q ss_pred HHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCChhh--HHhHHHHHh---ccCCchHHHHH
Q 043060 286 KARDLFESIEKR---DVISWNVMIGGYTHTSDYKEALMLFRQMLQSN-IEPNDVT--FLSVLPACA---YLGALDLGKWI 356 (707)
Q Consensus 286 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t--~~~ll~~~~---~~~~~~~a~~~ 356 (707)
.|+..-++.-.. -.-.|...+...+..|+|+.|+++++.-.... +.++..- -..++.+-+ -..+...++..
T Consensus 172 aAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 172 AARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 777666655432 23467788888889999999999888766533 3333321 112222211 11233444444
Q ss_pred HHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCC
Q 043060 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG--YKTLASWNAMISGLAMHGKADKALSLFSRMIG-EGLQ 433 (707)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~ 433 (707)
-....+..+.. ...--.-...+.+.|++.++-.+++.+= +|.+..|. +-.+.+.|+ .++.-+++... ..++
T Consensus 252 A~~a~KL~pdl--vPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk 325 (531)
T COG3898 252 ALEANKLAPDL--VPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--TALDRLKRAKKLESLK 325 (531)
T ss_pred HHHHhhcCCcc--chHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--cHHHHHHHHHHHHhcC
Confidence 44444443332 1112223445666666666666666552 22222222 112223333 33333333222 1145
Q ss_pred CCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH-cCCHHHHHHHHHh
Q 043060 434 PDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR-AGLFDEAEALLKT 497 (707)
Q Consensus 434 p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~ 497 (707)
||.. +...+..+-...|++..|..--+... ...|....|..|.+.-.. .|+-.++...+.+
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 5543 44445555555555555554444332 234555555555554333 2555555555444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.35 Score=45.20 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=38.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCc---hhHHHHHHHhhhcCChhhHHH
Q 043060 510 LLGACRVHGRLELGESVAKHLLELEPENP---GAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 510 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 559 (707)
+..-|.+.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..+.+..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 45678889999999999999999988755 356778888999999885543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.089 Score=53.91 Aligned_cols=195 Identities=16% Similarity=0.139 Sum_probs=107.3
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHH
Q 043060 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492 (707)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 492 (707)
+..+.+.-+++-++.++ +.||..+...++ +-.....+.++.++|++..+. + ...+..- ......|. ..
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~---~~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGH---FW 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccc---hh
Confidence 34556666777777777 777766433333 333455678888888876652 0 0000000 00000111 11
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--CchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 493 ALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE--NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 493 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
+.+.+-..+|-..+-..|...+.+.|+.++|.+.++++++..|. +..+...|+.++...+++.++..++.+-.+....
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111112223444456777778889999999999998887664 4567888899999999999999888887654443
Q ss_pred cCCcccEEeECCEEEEEEeCCCCCcC-------hHHHHHHHHHHHHHHHHcCCccCCc
Q 043060 571 KVPGCSSIEVGSVVHEFLVGDKVHPQ-------SKHIYEMLDEIDALLEKSGFVPDTS 621 (707)
Q Consensus 571 ~~~~~s~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~l~~~m~~~g~~pd~~ 621 (707)
|...++|...- +..-..+|+..|+ .......++.+.+.++..+.+|+-.
T Consensus 328 kSAti~YTaAL--LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 328 KSATICYTAAL--LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred chHHHHHHHHH--HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 33333332100 0000112222221 1122234567778888888888743
|
The molecular function of this protein is uncertain. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.018 Score=52.41 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=42.7
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHhc----------------cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 043060 114 AIKFYVRMILSGFVPNTYTFPFILKSCAK----------------ISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQ 177 (707)
Q Consensus 114 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----------------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 177 (707)
....+..|.+.|+.-|..+|+.||..+=+ -.+.+-|.+++++|...|+-||..++..|++.+++
T Consensus 71 I~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 71 IYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 33344444555555555555555544322 12346688889999999999999999988888866
Q ss_pred CCC
Q 043060 178 NGE 180 (707)
Q Consensus 178 ~g~ 180 (707)
.+.
T Consensus 151 ~s~ 153 (228)
T PF06239_consen 151 KSH 153 (228)
T ss_pred ccH
Confidence 553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.89 Score=48.06 Aligned_cols=200 Identities=14% Similarity=0.153 Sum_probs=92.8
Q ss_pred HHHHHHHHhccCChHHHHHH--HHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCC
Q 043060 133 FPFILKSCAKISAISEGKQI--HAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRG 210 (707)
Q Consensus 133 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 210 (707)
++..=++|.+-.+..--+-+ ++++.+.|-.|+... +...++-.|++.+|-++|.+ .|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 33344455544444332222 345556665565433 33445566788888777754 45
Q ss_pred ChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHH
Q 043060 211 YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290 (707)
Q Consensus 211 ~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 290 (707)
.-..|+++|..|.. --..+-+...|+.++-+.+...-.+. ..++.--.+-..++...|+.++|..+
T Consensus 660 ~enRAlEmyTDlRM------------FD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 660 HENRALEMYTDLRM------------FDYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI 725 (1081)
T ss_pred chhhHHHHHHHHHH------------HHHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh
Confidence 55666666666621 11122233334433333332221111 11111112334455555665555444
Q ss_pred HHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcH
Q 043060 291 FESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV 370 (707)
Q Consensus 291 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 370 (707)
. ..+|-.+-++++-+++-. .+..+...+..-+-+...+..|-++|..+-.
T Consensus 726 ~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-------- 775 (1081)
T KOG1538|consen 726 C------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD-------- 775 (1081)
T ss_pred h------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc--------
Confidence 2 222222333333322211 1223333333334444555566666654421
Q ss_pred HHHhHHhhHHHhcCCHHHHHHHHhcCCCC
Q 043060 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYK 399 (707)
Q Consensus 371 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 399 (707)
..+++++....++|.+|..+-++.++-
T Consensus 776 --~ksiVqlHve~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 776 --LKSLVQLHVETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred --HHHHhhheeecccchHhHhhhhhCccc
Confidence 245667777777777777777776643
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.20 E-value=1.7 Score=44.19 Aligned_cols=65 Identities=12% Similarity=0.100 Sum_probs=42.5
Q ss_pred cCCCCC----hHHHHHHHHH--HHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043060 466 YKISPK----LQHYGCMVDL--LGRAGLFDEAEALLKTM-EMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530 (707)
Q Consensus 466 ~~~~p~----~~~~~~li~~--~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 530 (707)
-|++|- ...-|.|.++ +...|++.++.-.-.=+ .+.|++.++..++-......++++|...+..+
T Consensus 450 ~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 450 VGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 366552 2345555554 45677777765433322 56788888888888888888888888776543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0095 Score=45.73 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM-------E-MKPD-AAIWTSLLGACRVHGRLELGESVAKHLLEL 533 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 533 (707)
+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555556666666666666665553 1 1133 557777888888888888888888887654
|
... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=1.3 Score=41.93 Aligned_cols=198 Identities=19% Similarity=0.190 Sum_probs=130.6
Q ss_pred HHHHhHHhhHHHhcCCHHHHHHHHhcCC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 043060 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMG-----YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS 444 (707)
Q Consensus 370 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 444 (707)
..........+...+.+..+...+.... ......+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4455666667777777777777666543 23444566666667777777888888887776332221 12222222
Q ss_pred -HHhccCCHHHHHHHHHHhHHhcCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcC
Q 043060 445 -ACNHAGLLDIGRQYFNAMIQDYKI--SPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD--AAIWTSLLGACRVHG 518 (707)
Q Consensus 445 -a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g 518 (707)
.+...|+++.+...+..... ... ......+......+...++.++|...+.+. ...|+ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 67778888888888887743 111 123334444444566778888888888775 33333 567777888888888
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 519 RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 519 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+++.|...+.......|.....+..+...+...|.++++...+.+..+...
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 888888888888888887556677777777777778888888777766443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.62 Score=43.53 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD----ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 478 (707)
.+-.....+.+.|++++|++.|+++... -|+. .....++.++.+.|+++.|...++..++.+.-.|... +...
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y 83 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALY 83 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHH
Confidence 3444555666778888888888887763 2221 2445566677777777777777777776654444331 1111
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch-----------------hH
Q 043060 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG-----------------AY 541 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----------------~~ 541 (707)
..+.+........ + ......+....|...++.+++..|+++. .-
T Consensus 84 ~~g~~~~~~~~~~---~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e 144 (203)
T PF13525_consen 84 MLGLSYYKQIPGI---L----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE 144 (203)
T ss_dssp HHHHHHHHHHHHH---H-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccc---h----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH
Confidence 1111100000000 0 0012223345566666666666665442 22
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 542 VLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 542 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
..++..|.+.|.+..|..-++.+.+.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34678899999999999999998874
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.037 Score=45.50 Aligned_cols=90 Identities=23% Similarity=0.198 Sum_probs=75.9
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccC-CCC---chhHHHHHHHhhhcCC
Q 043060 480 DLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELE-PEN---PGAYVLLSNMYAGAGR 553 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~ 553 (707)
-++...|+++.|++.|.+. .+-|. ...||.-..+++-+|+.++|..-+++++++. |.. -.+|+.-+.+|-..|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3577889999999999885 44454 8899999999999999999999999999975 432 2467888899999999
Q ss_pred hhhHHHHHHHHhhCCC
Q 043060 554 WDDVATIRTRLNDKGM 569 (707)
Q Consensus 554 ~~~a~~~~~~m~~~~~ 569 (707)
.++|..-|+...+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999999988776
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.098 Score=50.25 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=17.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIG 429 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (707)
|...|-.|...|..+|+++.|...|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 445555555555555555555555555555
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.028 Score=49.42 Aligned_cols=62 Identities=24% Similarity=0.283 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
.+...++..+...|+++.|...+++++..+|-+...|..++.+|...|+..+|.++|+++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45566777888999999999999999999999999999999999999999999999988853
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.1 Score=49.51 Aligned_cols=91 Identities=16% Similarity=0.198 Sum_probs=48.3
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhH
Q 043060 449 AGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM----EMKPD-AAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~g~~~~ 522 (707)
.|++..|.+.|...++.|.-.+ ....+-.|...+...|++++|..+|..+ +..|. +..+.-|.....+.|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 3445555555555544331111 1122333566666666666666655554 22233 3455556666666667777
Q ss_pred HHHHHHHHHccCCCCch
Q 043060 523 GESVAKHLLELEPENPG 539 (707)
Q Consensus 523 A~~~~~~~~~~~p~~~~ 539 (707)
|...++++.+..|..+.
T Consensus 234 A~atl~qv~k~YP~t~a 250 (262)
T COG1729 234 ACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHHHCCCCHH
Confidence 77777777766666543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.068 Score=54.60 Aligned_cols=96 Identities=13% Similarity=0.047 Sum_probs=62.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHH
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKT-MEMKPDA----AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS 545 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 545 (707)
+...++.+..+|.+.|++++|+..|++ +.+.|+. .+|..+..+|...|+.++|+..+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 556777788888888888888888887 4667773 35888888888888888888888888886321 121111
Q ss_pred H--HhhhcCChhhHHHHHHHHhhCCC
Q 043060 546 N--MYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 546 ~--~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
. .+....+.++..++++.+.+-|.
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1 11223334455556666655554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.98 Score=41.95 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc----CCCCchhH
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTME-------MKPD-AAIWTSLLGACRVHGRLELGESVAKHLLEL----EPENPGAY 541 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~ 541 (707)
.|......|.+..++++|-..|.+-. .-|+ -..+-+.|-.+....|+..|++.++..-+. +|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34455567788888888777666531 1233 234555566666777889999888886653 46677777
Q ss_pred HHHHHHhhhcCChhhHHHHH
Q 043060 542 VLLSNMYAGAGRWDDVATIR 561 (707)
Q Consensus 542 ~~l~~~~~~~g~~~~a~~~~ 561 (707)
..|+.+|- .|+.+++.++.
T Consensus 232 enLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhc-cCCHHHHHHHH
Confidence 77877774 56666665543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.38 Score=48.21 Aligned_cols=138 Identities=16% Similarity=0.083 Sum_probs=96.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 043060 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487 (707)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 487 (707)
.+.|.+.|++..|...|++.+.. -.. ...-+.++...... .-...+..+.-+|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~~-----------~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LEY-----------RRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hhc-----------cccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 34567778888888888877652 111 11111122221111 122345567778888999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhH-HHHHHHH
Q 043060 488 FDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV-ATIRTRL 564 (707)
Q Consensus 488 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 564 (707)
+.+|++..++. ...| |.-..---..+|...|+++.|+..|+++++++|.|-.+-..|+.+-.+..+..+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888775 4454 4666667788999999999999999999999999999999998888777666654 7788888
Q ss_pred hhC
Q 043060 565 NDK 567 (707)
Q Consensus 565 ~~~ 567 (707)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.26 Score=42.05 Aligned_cols=87 Identities=17% Similarity=0.155 Sum_probs=55.1
Q ss_pred HHHHcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch---hHHHHHHHhhhcC
Q 043060 481 LLGRAGLFDEAEALLKTM----EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG---AYVLLSNMYAGAG 552 (707)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g 552 (707)
...+.|++++|.+.|+.+ +..|- ...-..|+.++.+.|++++|...+++.++++|.++. ++...+-++.+..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 345677778887777776 22222 445566778888888888888888888888876553 3333333344433
Q ss_pred C---------------hhhHHHHHHHHhhC
Q 043060 553 R---------------WDDVATIRTRLNDK 567 (707)
Q Consensus 553 ~---------------~~~a~~~~~~m~~~ 567 (707)
. ..+|..-|+.++++
T Consensus 99 ~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 99 EGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred hhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 3 45666666666554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.4 Score=42.35 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=86.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 043060 409 SGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487 (707)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 487 (707)
......|++.+|..+|+..... .|+ ...-..+..++...|+++.|..++..+..+. -.........-+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhc
Confidence 4456678888888888887773 333 3355566777777888888887777664320 00111112233455555555
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccC--CCCchhHHHHHHHhhhcCChhh
Q 043060 488 FDEAEALLKTMEMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELE--PENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 488 ~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~ 556 (707)
..+...+-++..-.| |...-..+...+...|+.+.|.+.+-.+++.+ -.+..+-..|+.++.-.|.-+.
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 555555555554455 35555666677777777777777666666543 3455666666666666664443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.091 Score=49.78 Aligned_cols=93 Identities=20% Similarity=0.310 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----C---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC---CchhHHH
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM----E---MKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE---NPGAYVL 543 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~----~---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~ 543 (707)
.|+.-++ +.+.|++.+|...|... + ..|+..-| |+.++...|+++.|...|..+.+-.|+ -|.++.-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4555444 45678899999999885 1 33555555 889999999999999999999986654 5678999
Q ss_pred HHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 544 LSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 544 l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
|+.+..+.|+.++|...++++.++-.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999987654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.22 Score=42.02 Aligned_cols=50 Identities=10% Similarity=0.210 Sum_probs=34.1
Q ss_pred CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 043060 432 LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481 (707)
Q Consensus 432 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 481 (707)
..|+..++.+++.+++..+++..|.++.+...+.|+++.+...|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 56667777777777777777777777777777777766666666666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.6 Score=39.87 Aligned_cols=19 Identities=11% Similarity=0.027 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHccCCCCc
Q 043060 520 LELGESVAKHLLELEPENP 538 (707)
Q Consensus 520 ~~~A~~~~~~~~~~~p~~~ 538 (707)
...|...|+++++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5678888899999889764
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.26 E-value=2.1 Score=40.51 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=46.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCc---hhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 509 SLLGACRVHGRLELGESVAKHLLELEPENP---GAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 509 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
.+..-|.+.|.+..|..-++++++.-|+.+ .++..+..+|...|..++|.+.-+-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 455678889999999999999998766544 45667778899999999998876665543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.36 Score=49.64 Aligned_cols=119 Identities=8% Similarity=0.028 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHH---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 043060 451 LLDIGRQYFNAMIQDYKISPK-LQHYGCMVDLLGR---------AGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHG 518 (707)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 518 (707)
..+.|..+|.+......+.|+ ...|..+..++.. .....+|.++.++. ...| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 467788889988744455664 4555555544332 22345566666654 4555 4777777888788888
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 519 RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 519 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+++.|...|+++..++|+.+.+|...+....-.|+.++|.+.+++..+..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 899999999999999999999999999999999999999999998766544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.18 E-value=6.1 Score=43.24 Aligned_cols=101 Identities=15% Similarity=0.078 Sum_probs=64.7
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhH
Q 043060 138 KSCAKISAISEGKQIHAHVLKLGLES---DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214 (707)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 214 (707)
+.+.+.+.+++|...-.... |..+ -..++..+|..+.-.|++++|-...-.|-..+..-|.-.+.-+...++...
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 34445556666665554432 2333 345677888888888999999988888888888888888888877777654
Q ss_pred HHHHHHhCccccCCCCCCHhhHHHHHHHHhc
Q 043060 215 ARQLFDEMPIREENFVPNESTVVTVLSACAH 245 (707)
Q Consensus 215 A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~ 245 (707)
... -++.... ..+...|..++..+..
T Consensus 442 Ia~---~lPt~~~--rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 442 IAP---YLPTGPP--RLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhc---cCCCCCc--ccCchHHHHHHHHHHH
Confidence 333 3331111 2344566667766655
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.09 E-value=3 Score=39.23 Aligned_cols=164 Identities=16% Similarity=0.152 Sum_probs=113.9
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC---ChHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCC----CHhHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK---TLASWNAMIS-GLAMHGKADKALSLFSRMIGEGLQP----DDITFV 440 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~ 440 (707)
....+..+...+...++...+.+.+...... +...+..... .+...|+++.|...|.+... ..| ....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 171 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALL 171 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHH
Confidence 4445556666666667777777777765431 2122333333 67888999999999998865 343 223444
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 043060 441 GVLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVH 517 (707)
Q Consensus 441 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~ 517 (707)
.....+...++.+.+...+..... .... ....+..+...+...+++++|...+... ...|+ ...+..+...+...
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHc
Confidence 444456778899999999988875 2333 4677788888888999999999988886 44454 45566666666677
Q ss_pred CChhHHHHHHHHHHccCCC
Q 043060 518 GRLELGESVAKHLLELEPE 536 (707)
Q Consensus 518 g~~~~A~~~~~~~~~~~p~ 536 (707)
+..+.+...+.+..+..|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 250 GRYEEALEALEKALELDPD 268 (291)
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 7899999999999998886
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.08 E-value=6.4 Score=42.89 Aligned_cols=330 Identities=14% Similarity=0.100 Sum_probs=183.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHc-CC-CchhHHHHHHH
Q 043060 198 SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGH-GL-GSNLHVTNALI 275 (707)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~-~~~~~~~~~li 275 (707)
+-..+|.-++..+.+..|+++-..+.. .-..- ...|.....-+.+..+..+ ..+++.+.+. +. -.+...|....
T Consensus 439 ~~~~vi~Rl~~r~~Y~vaIQva~~l~~--p~~~~-~~Vl~~Wa~~kI~~~d~~d-~~vld~I~~kls~~~~~~iSy~~iA 514 (829)
T KOG2280|consen 439 SEEVVIDRLVDRHLYSVAIQVAKLLNL--PESQG-DRVLLEWARRKIKQSDKMD-EEVLDKIDEKLSAKLTPGISYAAIA 514 (829)
T ss_pred chhhhhHHHHhcchhHHHHHHHHHhCC--ccccc-cHHHHHHHHHHHhccCccc-hHHHHHHHHHhcccCCCceeHHHHH
Confidence 345577888888999999999888732 22121 4455555555555433221 1222222221 11 13445677777
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhcc
Q 043060 276 DMYSKCGDLVKARDLFESIEKR--------DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347 (707)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 347 (707)
.-...+|+.+-|..+.+.=+.. +..-+...+.-..+.|+.+-...++..+...- +...|... .
T Consensus 515 ~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l 585 (829)
T KOG2280|consen 515 RRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------L 585 (829)
T ss_pred HHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------H
Confidence 7778899999999988764432 12223444455556666666666655554321 11111111 1
Q ss_pred CCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcC------CCCChHHHHHHHHHHHHcCC---HH
Q 043060 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM------GYKTLASWNAMISGLAMHGK---AD 418 (707)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~------~~~~~~~~~~li~~~~~~g~---~~ 418 (707)
.+.-.|..++....+.... ..|-+.|-...+...+-.+.-+- ...-..........+++... .+
T Consensus 586 ~~~p~a~~lY~~~~r~~~~-------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDR-------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEA 658 (829)
T ss_pred HhchhhhHHHHHHHHhhch-------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHH
Confidence 1223344444444442211 11222233222222221111111 01111122233334443332 11
Q ss_pred HH-------HHHHHHHHH-CCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 043060 419 KA-------LSLFSRMIG-EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490 (707)
Q Consensus 419 ~A-------~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 490 (707)
+| +.+.+.+.. .|..-...|.+--+.-+...|+..+|.++-.+. .+ ||...|..-+.+++..+++++
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----ki-pdKr~~wLk~~aLa~~~kwee 733 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----KI-PDKRLWWLKLTALADIKKWEE 733 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----CC-cchhhHHHHHHHHHhhhhHHH
Confidence 22 223333322 133334445666677788889999998886655 33 788888888999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHH
Q 043060 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 491 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 563 (707)
-+++-+++. .+.-|.-...+|.+.|+.++|.+.+-+.-.+ .-...+|.+.|++.+|.++--+
T Consensus 734 LekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 734 LEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 888887764 2566777888999999999998887654222 1577889999999999876443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.1 Score=44.02 Aligned_cols=122 Identities=13% Similarity=0.073 Sum_probs=61.3
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCC----CCCcHHHHhHHhhHHHhcCCHHHHHHHHhcC-------CCCChH------
Q 043060 340 VLPACAYLGALDLGKWIHAYIDKNHQ----KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM-------GYKTLA------ 402 (707)
Q Consensus 340 ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-------~~~~~~------ 402 (707)
+-.+....+.++++.+.|+...+... ..-...++-+|...|.+..++++|.-+..+. .-.|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44455555556666666555544211 1114567788888888888887776544332 222222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHh-HHHHHHHHHhccCCHHHHHHHHHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGE----GLQPDDI-TFVGVLSACNHAGLLDIGRQYFNA 461 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 461 (707)
+.--|..++...|...+|.+.-++..+. |-+|-.. ....+.+.|-..|+.+.|+.-|+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 2223444556666666666666554432 2222111 223344444555555555544443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.61 Score=45.24 Aligned_cols=148 Identities=15% Similarity=0.129 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH----HHHHHHHcCCHHH
Q 043060 415 GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC----MVDLLGRAGLFDE 490 (707)
Q Consensus 415 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~~~ 490 (707)
|+..+|-..++++++. .+.|-..+.-.-.+|...|+.+.-...++++.. ...+|...|.. +.-++..+|-+++
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4444444444444442 233333444444445555555444444444443 22233322221 1222334455555
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC----CchhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 491 AEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPE----NPGAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 491 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
|++.-++. .++| |...-.++.......|+..++.+...+--..-.. -...|-..+-.+...+.++.|.++|++-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 55554443 3332 2333333444444445555554443332221110 1123333444444445555555555443
Q ss_pred h
Q 043060 565 N 565 (707)
Q Consensus 565 ~ 565 (707)
.
T Consensus 274 i 274 (491)
T KOG2610|consen 274 I 274 (491)
T ss_pred H
Confidence 3
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.3 Score=42.61 Aligned_cols=122 Identities=12% Similarity=0.067 Sum_probs=89.0
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChh
Q 043060 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTS---LLGACRVHGRLE 521 (707)
Q Consensus 445 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll~~~~~~g~~~ 521 (707)
.....|++.+|...|...... .+-+...--.|+.+|...|+.++|..++..++.+-...-|.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 456788999999999988763 333456667789999999999999999999975543333333 233333333333
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 522 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+.. .++.-+..+|+|...-..|+..|...|+.++|.+.+=.+.+++.
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 322 23445567899999999999999999999999998877776543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.052 Score=33.53 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
.+|..++..+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.69 Score=45.42 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=21.1
Q ss_pred HHhcCCHHHHHHHHHHHhhcC--CCCChhhHHhHHHHHhccCCchHH
Q 043060 309 YTHTSDYKEALMLFRQMLQSN--IEPNDVTFLSVLPACAYLGALDLG 353 (707)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a 353 (707)
+.+..+.++|+..+.+-...- ..---.++..+..+.+..|.++++
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~m 62 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEM 62 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH
Confidence 345566666766666554421 111122444444555555544443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.29 Score=46.22 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=80.8
Q ss_pred HHHHHHhcCC--CCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC----------
Q 043060 388 AAEQVFDGMG--YKTLASWNAMISGLAMH-----GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG---------- 450 (707)
Q Consensus 388 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 450 (707)
..++.|..+. ++|-.+|-+++..+..+ +..+-....++.|.+.|+.-|..+|..|++.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 4456677776 67888898888888654 557777788899999999999999999999875532
Q ss_pred ------CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 043060 451 ------LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489 (707)
Q Consensus 451 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 489 (707)
+-+-+..+++.|. .+|+.||.++-..|++++++.|..-
T Consensus 132 F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccH
Confidence 2345788899995 4799999999999999999988753
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.078 Score=32.65 Aligned_cols=33 Identities=30% Similarity=0.349 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 537 (707)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456677777888888888888888888887764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.33 Score=40.94 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=27.9
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 043060 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTM----EMKPDAAIWTSLLGAC 514 (707)
Q Consensus 467 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~ 514 (707)
...|+.....+++.+|+..|++..|+++++.. +++-+..+|..|+.-+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34456666666666666666666666665553 4443456666666544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.22 Score=44.55 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=73.9
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcC
Q 043060 480 DLLGRAGLFDEAEALLKTM-EMKP------DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~-~~~p------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 552 (707)
+-+.+.|++++|..-|... ..-| ..+.|..-..+..+.+.++.|+.-..++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4466778888888777764 2112 24567777778899999999999999999999998888899999999999
Q ss_pred ChhhHHHHHHHHhhCCC
Q 043060 553 RWDDVATIRTRLNDKGM 569 (707)
Q Consensus 553 ~~~~a~~~~~~m~~~~~ 569 (707)
++++|++-++++.+..+
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 99999999999988665
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.53 Score=45.65 Aligned_cols=116 Identities=10% Similarity=0.015 Sum_probs=94.7
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHH----HHHHHHHHhcCChh
Q 043060 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-E-MKPDAAIW----TSLLGACRVHGRLE 521 (707)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~----~~ll~~~~~~g~~~ 521 (707)
..|+..+|-..++++.+ ..+.|...+.--=+++.-.|+.+.-...++++ + ..||...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 46778888888888887 55668788887888999999999999999887 3 36664332 33444567789999
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 522 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
+|++..+++++++|.|.-+...++.++.-.|++.++.++..+-.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 99999999999999999999999999999999999999876643
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.37 E-value=2.3 Score=38.84 Aligned_cols=163 Identities=18% Similarity=0.169 Sum_probs=94.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 478 (707)
-+..||-+.--+...|+++.|.+.|+...+ +.|... +...-.-++.-.|++.-|.+-|...-+.-...|-...|--
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY- 174 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY- 174 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH-
Confidence 345778777778888888888888888877 455332 3322233445567888887766655442112222222222
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-------chhHHHHHHHhhhc
Q 043060 479 VDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN-------PGAYVLLSNMYAGA 551 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 551 (707)
.-.+.-++.+|..-+.+--..-|..-|...+-.+.-- ++. -+.+++++.+-..++ ..+|..|+.-|...
T Consensus 175 --l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLg-kiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 175 --LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLG-KIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred --HHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHh-hcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2234446777766443321123555565555444322 111 112333333322222 36899999999999
Q ss_pred CChhhHHHHHHHHhhCCC
Q 043060 552 GRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 552 g~~~~a~~~~~~m~~~~~ 569 (707)
|..++|..+|+.....++
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 999999999999887655
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.29 E-value=6.3 Score=45.35 Aligned_cols=126 Identities=14% Similarity=0.118 Sum_probs=58.3
Q ss_pred CCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH----HhccCCHHHHHHHH
Q 043060 384 GNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA----CNHAGLLDIGRQYF 459 (707)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a----~~~~g~~~~a~~~~ 459 (707)
|++++|+.-+.++. ...|.-.+.--.++|.+.+|+.++ +|+...+..+..+ +...+.+++|--.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45555655555543 223333333344555555555553 3444443333332 33444555555444
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHH
Q 043060 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAI--WTSLLGACRVHGRLELGESVAKHL 530 (707)
Q Consensus 460 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~ll~~~~~~g~~~~A~~~~~~~ 530 (707)
+..-+ ..--+.+|..+|++.+|+.+-.++....|... -..|..-+...++.-+|-++..+.
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 43311 01123445555666666666555543333222 244555555666555555544443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.29 E-value=3.2 Score=35.96 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=46.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCCh
Q 043060 133 FPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYL 212 (707)
Q Consensus 133 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 212 (707)
...++..+...+.......+++.+++.+ ..+...++.++..|++.+ .++....++. ..+......+++.+.+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 3445555555566666666666666665 355666777777777653 2333444442 12233333455555555555
Q ss_pred hHHHHHHHhC
Q 043060 213 DDARQLFDEM 222 (707)
Q Consensus 213 ~~A~~l~~~m 222 (707)
+++.-++.++
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 5555555554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.26 E-value=6.1 Score=38.98 Aligned_cols=20 Identities=5% Similarity=-0.208 Sum_probs=13.5
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 043060 512 GACRVHGRLELGESVAKHLL 531 (707)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~ 531 (707)
..+.+.++++.|...|+-.+
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34556777888888777544
|
It is also involved in sporulation []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.24 E-value=11 Score=41.79 Aligned_cols=75 Identities=13% Similarity=0.157 Sum_probs=49.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc-cCCCCchhHHHHHHHhhhcCC
Q 043060 478 MVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLE-LEPENPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~ 553 (707)
++..+....+++.+..+.+..+-. |+..|..++.-+.+.+.++.-.+...++++ +...+.-.-..+++++++.+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 445566778888888888888644 788999999999998877777666666654 222222223445555555554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.22 E-value=3.7 Score=42.63 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=10.8
Q ss_pred HHHHHHHHHccCCCCc
Q 043060 523 GESVAKHLLELEPENP 538 (707)
Q Consensus 523 A~~~~~~~~~~~p~~~ 538 (707)
|.++..++.+.+|.-|
T Consensus 365 aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 365 AVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHHhCCCCc
Confidence 5567777777777543
|
The molecular function of this protein is uncertain. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.49 Score=41.46 Aligned_cols=68 Identities=19% Similarity=0.329 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCChHH
Q 043060 405 NAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQ----DYKISPKLQH 474 (707)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 474 (707)
..++..+...|++++|+.+.+++.. ..| |...+..++.++...|+..+|.+.|+.+.+ +.|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3344455556666666666666665 333 333566666666666666666666554422 3455555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.18 E-value=7.5 Score=39.71 Aligned_cols=446 Identities=13% Similarity=0.093 Sum_probs=223.6
Q ss_pred HHHHHHHHhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCCCCc---chHHHHHHHHHcCCCchHHHHHHHHHHHC
Q 043060 48 QVHSQIIKTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIREPNQ---VIWNNIIRGHSLSSSPVVAIKFYVRMILS 124 (707)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 124 (707)
++-+.+... +.+..+|-.|+ .-|...|..++.++++++|..|-. .+|..-+++-...++++....+|.+-+..
T Consensus 30 rLRerIkdN--PtnI~S~fqLi--q~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLI--QYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHH--HHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 444555443 46888999999 999999999999999999988644 47988898888889999999999998876
Q ss_pred CCCCCcccHHHHHHHHhccCChH------HHHHHHHHHHH-hCCCCC-hhHHHHHHHHHHh---------CCChhHHHHH
Q 043060 125 GFVPNTYTFPFILKSCAKISAIS------EGKQIHAHVLK-LGLESD-PFVHTSLINMYAQ---------NGELESARLV 187 (707)
Q Consensus 125 g~~p~~~t~~~ll~~~~~~~~~~------~a~~~~~~~~~-~g~~~~-~~~~~~li~~~~~---------~g~~~~A~~~ 187 (707)
.+ +...|..-+.-..+.+..- .-.+.++..+. .+++|- ...|+..+..+-. ..++|..++.
T Consensus 106 ~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 SL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred hc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 43 4455555554433333211 12233444443 244443 2345555444321 2345555666
Q ss_pred HhcCCCC----------CeehHHHHHHHHHh-------CCChhHHHHHHHhCccccCCCCC----CHhhHHHHHHHHhcc
Q 043060 188 FNKSSLR----------DAVSYTALITGYAS-------RGYLDDARQLFDEMPIREENFVP----NESTVVTVLSACAHM 246 (707)
Q Consensus 188 f~~~~~~----------~~~~~~~li~~~~~-------~g~~~~A~~l~~~m~~~~~~~~p----~~~t~~~ll~~~~~~ 246 (707)
+.++... |-..|..=+.-... .--+..|.+.+++..-.-.|+.. +..|++-+-+. +..
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~-s~S 262 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART-SDS 262 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc-ccc
Confidence 6655432 11111111111110 01133455555544221123221 12222221110 000
Q ss_pred CCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043060 247 GSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFR 323 (707)
Q Consensus 247 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 323 (707)
+ -....+.-.+.|+....... .+..--+|+.... -....|----.-+...++-+.|+....
T Consensus 263 ~----WlNwIkwE~en~l~L~~~~~------------~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~ 326 (660)
T COG5107 263 N----WLNWIKWEMENGLKLGGRPH------------EQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVE 326 (660)
T ss_pred h----hhhHhhHhhcCCcccCCCcH------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 0 00011111111111100000 0000111111111 011223322333444555566665544
Q ss_pred HHhhcCCCCChhhHHhHHHHHhcc-CCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHh---------cCCHHHHHHHH
Q 043060 324 QMLQSNIEPNDVTFLSVLPACAYL-GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK---------CGNIKAAEQVF 393 (707)
Q Consensus 324 ~m~~~g~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~---------~g~~~~A~~~~ 393 (707)
.-.+. .|. +...+.-|... .+-+.....|+...+ .|..-|.+ .|+++.-.+++
T Consensus 327 rg~~~--sps---L~~~lse~yel~nd~e~v~~~fdk~~q------------~L~r~ys~~~s~~~s~~D~N~e~~~Ell 389 (660)
T COG5107 327 RGIEM--SPS---LTMFLSEYYELVNDEEAVYGCFDKCTQ------------DLKRKYSMGESESASKVDNNFEYSKELL 389 (660)
T ss_pred hcccC--CCc---hheeHHHHHhhcccHHHHhhhHHHHHH------------HHHHHHhhhhhhhhccccCCccccHHHH
Confidence 43221 122 22222222222 222222222221111 01111100 12222222222
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh
Q 043060 394 DGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEG-LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472 (707)
Q Consensus 394 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 472 (707)
-+-..+=...|-..+..-.+..-.+.|..+|-+..+.| +.++...+++++.-+ ..|+...|..+|+.=...+ ||.
T Consensus 390 ~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f---~d~ 465 (660)
T COG5107 390 LKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKF---PDS 465 (660)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhC---CCc
Confidence 11112233466677777777777888888888888888 566666777777654 4577788888887655432 333
Q ss_pred HH-HHHHHHHHHHcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 043060 473 QH-YGCMVDLLGRAGLFDEAEALLKTM--EMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 473 ~~-~~~li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 537 (707)
.. -.-.+..+.+-++-+.|..+|+.. .+..+ ..+|..++.--..-|++..+..+-+++.++-|..
T Consensus 466 ~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 466 TLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred hHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 33 334566677888888888888864 22233 5688888888888898888888888888887764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.10 E-value=1.3 Score=46.68 Aligned_cols=158 Identities=15% Similarity=0.088 Sum_probs=100.3
Q ss_pred HHHHcCCCchHHHHHHH-HHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 043060 103 RGHSLSSSPVVAIKFYV-RMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGEL 181 (707)
Q Consensus 103 ~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 181 (707)
....-+++++++.++.+ .-.-..++ ..-.+.+++-+-+.|..+.|+++-..- ..-.....++|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCH
Confidence 34456788888777665 11111122 334677777788888888888765432 2335566789999
Q ss_pred hHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHH
Q 043060 182 ESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261 (707)
Q Consensus 182 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 261 (707)
+.|.++-++.. +...|..|.....+.|+++-|.+.|.+... |..++-.|...|+.+.-.++......
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999988876 667999999999999999999999999832 66777777778888777777777666
Q ss_pred cCCCchhHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043060 262 HGLGSNLHVTNALIDMYSKCGDLVKARDLFES 293 (707)
Q Consensus 262 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 293 (707)
.|- +|....++.-.|+.++..+++.+
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 651 33333344445666555555433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.24 Score=46.71 Aligned_cols=99 Identities=10% Similarity=0.017 Sum_probs=76.3
Q ss_pred HHHHHHhcCC--CCCcchHHHHHHHHHcC-----CCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccC----------
Q 043060 82 YALLVFETIR--EPNQVIWNNIIRGHSLS-----SSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS---------- 144 (707)
Q Consensus 82 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------- 144 (707)
...+.|...+ ++|-.+|-+++..+... +..+-....++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677776 57778888888777543 445556667788999999999999999998765422
Q ss_pred ------ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043060 145 ------AISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180 (707)
Q Consensus 145 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 180 (707)
+-+-+..++++|...|+.||..+-..|++++++.+-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 234578899999999999999999999999987764
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.00 E-value=22 Score=44.46 Aligned_cols=282 Identities=12% Similarity=0.093 Sum_probs=142.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh-cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccC
Q 043060 270 VTNALIDMYSKCGDLVKARDLFES-IEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348 (707)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 348 (707)
.+-.+...|+..+++|....+... ...++ ...-|.-....|++..|..-|+.+.+.+ ++...+++.++......+
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~ 1497 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQ 1497 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhccc
Confidence 334444466666666666555552 22222 2233444556677777777777776643 222556666666655666
Q ss_pred CchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHH--HHHHHHcC--CHHHHHHHH
Q 043060 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM--ISGLAMHG--KADKALSLF 424 (707)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~ 424 (707)
.++...-..+.......+. ....++.=+.+--+.++++....... ..+...|.+. +..+.+.. +.-.-.++.
T Consensus 1498 ~l~t~i~~~dg~~~~~se~-~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i 1573 (2382)
T KOG0890|consen 1498 HLSTEILHLDGLIINRSEE-VDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLI 1573 (2382)
T ss_pred chhHHHhhhcchhhccCHH-HHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHH
Confidence 6555554433333322221 11222222333455666666655554 4455555544 22222221 111111233
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHH----------HhHHhcCCCCChH------HHHHHHHHHHHcCCH
Q 043060 425 SRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFN----------AMIQDYKISPKLQ------HYGCMVDLLGRAGLF 488 (707)
Q Consensus 425 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~----------~~~~~~~~~p~~~------~~~~li~~~~~~g~~ 488 (707)
+.+++.-+.| +.+|+..|.+..+.++.- ......+..++.. .|..-+..-....+.
T Consensus 1574 ~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~ 1645 (2382)
T KOG0890|consen 1574 ENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRI 1645 (2382)
T ss_pred HHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHH
Confidence 3333211111 222333322222222211 1111113333221 222222111111122
Q ss_pred HHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHH
Q 043060 489 DEAEALLKTM----EMKPD-----AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 489 ~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 559 (707)
.+-+--+++. ..+|+ ..+|......++..|.++.|....-++.+..+ +..+...+..+...|+...|..
T Consensus 1646 ~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~ 1723 (2382)
T KOG0890|consen 1646 KEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALS 1723 (2382)
T ss_pred HhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHH
Confidence 2222222221 12222 67999999999999999999999888888774 4789999999999999999999
Q ss_pred HHHHHhhCCC
Q 043060 560 IRTRLNDKGM 569 (707)
Q Consensus 560 ~~~~m~~~~~ 569 (707)
++++..+...
T Consensus 1724 ~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1724 VLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHhhc
Confidence 9999886543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.97 E-value=5.2 Score=40.70 Aligned_cols=71 Identities=20% Similarity=0.132 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---C----hhhHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCChhhHHhHHH
Q 043060 273 ALIDMYSKCGDLVKARDLFESIEKR---D----VISWNVMIGGYTH---TSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342 (707)
Q Consensus 273 ~li~~~~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (707)
.|+-.|-...+++...++.+.+... + ...-....-++-+ .|+.++|++++..+......++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3344466666666666666666543 1 1111123334445 6777777777777555555566666655544
Q ss_pred H
Q 043060 343 A 343 (707)
Q Consensus 343 ~ 343 (707)
.
T Consensus 226 I 226 (374)
T PF13281_consen 226 I 226 (374)
T ss_pred H
Confidence 3
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.92 E-value=3.2 Score=44.38 Aligned_cols=158 Identities=13% Similarity=0.100 Sum_probs=99.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHh-----HHHHHHHHHh----ccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 043060 407 MISGLAMHGKADKALSLFSRMIGEG-LQPDDI-----TFVGVLSACN----HAGLLDIGRQYFNAMIQDYKISPKLQHYG 476 (707)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-----t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 476 (707)
++....=.||-+.+++++.+..+.+ +.-... +|..++..+. .....+.+.+++..+.+.| |+...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~lfl 270 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSALFL 270 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHHHH
Confidence 3344444566666666666554421 111111 1222222222 2557888899999887653 6655544
Q ss_pred H-HHHHHHHcCCHHHHHHHHHhCC-CC---C--CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHH-HHHHHh
Q 043060 477 C-MVDLLGRAGLFDEAEALLKTME-MK---P--DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV-LLSNMY 548 (707)
Q Consensus 477 ~-li~~~~~~g~~~~A~~~~~~~~-~~---p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~l~~~~ 548 (707)
. -...+...|++++|++.|++.- .+ | ....+--+...+....++++|...+.++.+...-....|. ..+-++
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3 3456677899999999999752 11 1 2334445666778889999999999999987665555555 445557
Q ss_pred hhcCCh-------hhHHHHHHHHhhC
Q 043060 549 AGAGRW-------DDVATIRTRLNDK 567 (707)
Q Consensus 549 ~~~g~~-------~~a~~~~~~m~~~ 567 (707)
...|+. ++|.++++++...
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHHH
Confidence 778988 8888888877643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.76 E-value=3.1 Score=36.00 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043060 486 GLFDEAEALLKTMEMKPDAAIWTSLLGAC 514 (707)
Q Consensus 486 g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 514 (707)
++++.|.+++.+.. +...|..++..+
T Consensus 110 ~d~~~a~~~~~~~~---~~~lw~~~~~~~ 135 (140)
T smart00299 110 GNYEKAIEYFVKQN---NPELWAEVLKAL 135 (140)
T ss_pred cCHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 45555555555421 344555555444
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=15 Score=40.89 Aligned_cols=116 Identities=15% Similarity=0.115 Sum_probs=61.2
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCCHh--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 043060 414 HGKADKALSLFSRMIGE-GLQPDDI--TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490 (707)
Q Consensus 414 ~g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 490 (707)
..+.+.|..++.+.... +..+... ....+.......+..+++...+...... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 34567788888776443 2333322 2233332223332255666666654321 1233344444555557888888
Q ss_pred HHHHHHhCCCC-CCHHHHH-HHHHHHHhcCChhHHHHHHHHHHc
Q 043060 491 AEALLKTMEMK-PDAAIWT-SLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 491 A~~~~~~~~~~-p~~~~~~-~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
+...+..|+.. -+..-|. =+..+....|+.++|...|+++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888877321 1111222 244555667888888888887643
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.7 Score=38.28 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=28.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 410 GLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
+++..|+.+.|++.|.+.+. +-| +...|+.-..++--+|+.++|+.-+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34555666666666666555 333 233555555555555555555555555544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.42 E-value=13 Score=39.75 Aligned_cols=126 Identities=12% Similarity=0.107 Sum_probs=53.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHhcCCCCCee---hHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHh
Q 043060 168 HTSLINMYAQNGELESARLVFNKSSLRDAV---SYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA 244 (707)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~ 244 (707)
++.||.---...+.+.++.+++.+...=+. -|-....-=.+.|..+.+.++|++-. .+++-+...|...+.-+.
T Consensus 48 wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv---~aip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 48 WTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGV---QAIPLSVDLWLSYLAFLK 124 (577)
T ss_pred hHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHh
Confidence 444443333333334444444444422211 12333333334455555556665543 344444444444443332
Q ss_pred -ccCCchHHHHHHHHHHHc-CCC-chhHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 043060 245 -HMGSLELGNWVCSLIEGH-GLG-SNLHVTNALIDMYSKCGDLVKARDLFESIEK 296 (707)
Q Consensus 245 -~~g~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 296 (707)
..|+.+.....|+.++.. |.. .....|-.+|..-..++++.....+|+++.+
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 334444455555544442 111 1223444444444455555555555555544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.34 E-value=6.7 Score=37.21 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=30.7
Q ss_pred HhcCCHHHHHHHHHhcCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 043060 279 SKCGDLVKARDLFESIEKRDV------ISWNVMIGGYTHTSDYKEALMLFRQMLQS 328 (707)
Q Consensus 279 ~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 328 (707)
.+.|++++|.+.|+.+..+.+ .+--.++.++-+.+++++|+..+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 456677777777777664321 22334455666777777777777766654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=1.9 Score=37.92 Aligned_cols=84 Identities=10% Similarity=0.033 Sum_probs=38.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 043060 411 LAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489 (707)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 489 (707)
+-+.|++++|..+|+-+.. ..|... -+..|..+|-..+++++|...|.....-.. -|+..+--...+|...|+.+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCCccchHHHHHHHhCCHH
Confidence 3445555555555555544 222222 233444444445555555555554432111 12212222445555555555
Q ss_pred HHHHHHHhC
Q 043060 490 EAEALLKTM 498 (707)
Q Consensus 490 ~A~~~~~~~ 498 (707)
+|..-|+..
T Consensus 123 ~A~~~f~~a 131 (165)
T PRK15331 123 KARQCFELV 131 (165)
T ss_pred HHHHHHHHH
Confidence 555555544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.17 E-value=1.4 Score=46.48 Aligned_cols=134 Identities=15% Similarity=0.236 Sum_probs=85.0
Q ss_pred HHHHcCCHHHHHHHHHHHH-HCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH
Q 043060 410 GLAMHGKADKALSLFSRMI-GEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488 (707)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 488 (707)
...-.|+++++.++.+.-. -..++ ..-...++.-+.+.|..+.|+++-..-.. -.++..+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCH
Confidence 3445677777766664111 10111 33466677777788888888876543322 34566788999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 489 DEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 489 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
+.|.++.++.. +...|..|......+|+++.|++.+++. .-+..|+-.|...|+.+.-.++-+...++|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99988876654 7889999999999999999999988875 345667778888888877777777766665
Q ss_pred C
Q 043060 569 M 569 (707)
Q Consensus 569 ~ 569 (707)
-
T Consensus 404 ~ 404 (443)
T PF04053_consen 404 D 404 (443)
T ss_dssp -
T ss_pred C
Confidence 4
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.91 E-value=12 Score=38.50 Aligned_cols=149 Identities=11% Similarity=-0.023 Sum_probs=82.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHhccCCHHHHHHHHHHhHHh-cCCCCChHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP---DDITFVGVLSACNHAGLLDIGRQYFNAMIQD-YKISPKLQHY 475 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~ 475 (707)
...+|..++..+.+.|.++.|...+.++...+..+ +......-+...-..|+-++|...++..... .....+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 44578888888889999999998888887743222 2233444455566778888888888777652 1111011111
Q ss_pred HHHHHHHHHcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhc------CChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 476 GCMVDLLGRAGLFDEAEALL-KTMEMKPDAAIWTSLLGACRVH------GRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
..+...+.. ..+.....- .......-..++..+..-+... ++.+.+...|.++.++.|....+|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111100000 000000000 0000000123444444444444 7889999999999999998888888877766
Q ss_pred hh
Q 043060 549 AG 550 (707)
Q Consensus 549 ~~ 550 (707)
.+
T Consensus 303 ~~ 304 (352)
T PF02259_consen 303 DK 304 (352)
T ss_pred HH
Confidence 53
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.2 Score=31.38 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=20.5
Q ss_pred hHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 540 AYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 540 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
+|..|+++|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888999999999998888854
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=12 Score=36.79 Aligned_cols=74 Identities=11% Similarity=0.065 Sum_probs=42.7
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 447 (707)
+..+...-+.++++.|+.+-.-.+.+.+..++ ..-..+.++...|+. +|+..+.++.+ -.||..+-...+.+|.
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDKLK 278 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHHHh
Confidence 45555666666666666433333333333333 233566777777775 68888888776 3456665555555543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.29 Score=47.41 Aligned_cols=109 Identities=14% Similarity=0.079 Sum_probs=76.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 043060 442 VLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHG 518 (707)
Q Consensus 442 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 518 (707)
-.+-|.++|.+++|+..|...+ ...| +..++..-..+|.+..++..|+.-.... .+.. -...|.--+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999998765 3445 7788888888999999988877655543 2211 1445666666666778
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhH
Q 043060 519 RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557 (707)
Q Consensus 519 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 557 (707)
+..+|.+-++.+++++|++.. |-..|.+.....++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRER 214 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhh
Confidence 999999999999999998644 33334444444444
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.03 E-value=13 Score=36.54 Aligned_cols=180 Identities=8% Similarity=-0.050 Sum_probs=74.2
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH----HHHHHHHHHHhhcCCCCChhhHHhHH
Q 043060 266 SNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY----KEALMLFRQMLQSNIEPNDVTFLSVL 341 (707)
Q Consensus 266 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll 341 (707)
+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. ++++..+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34445555555555555433333333323344544444555555555542 3556666555332 23444433444
Q ss_pred HHHhccCCchH--HHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcC-CHH
Q 043060 342 PACAYLGALDL--GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHG-KAD 418 (707)
Q Consensus 342 ~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~ 418 (707)
.++...+.... .......+...-... +..+....+.++++.|+.+....+..-+..+|...-...+.++.+.+ +..
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~-~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDK-STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 44443322110 011112121111111 44444555555555555333333333333344433333334444332 133
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCC
Q 043060 419 KALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 451 (707)
Q Consensus 419 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 451 (707)
.+...+..+.. .+|..+-...+.++.+.|+
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCC
Confidence 44444444442 3344444444444444444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.80 E-value=9.3 Score=40.90 Aligned_cols=79 Identities=11% Similarity=0.035 Sum_probs=42.3
Q ss_pred CchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC-------ChHHHHHHHHHHHHcCCHHHHH
Q 043060 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK-------TLASWNAMISGLAMHGKADKAL 421 (707)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~ 421 (707)
..+.+.+++..+.+.-+. +....-.-...+...|++++|.+.|++.... ....+--+.-.+.-..++++|.
T Consensus 248 ~~~~a~~lL~~~~~~yP~--s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPN--SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 345555555555555443 2222233345556667777777777654321 1122333344455566777777
Q ss_pred HHHHHHHH
Q 043060 422 SLFSRMIG 429 (707)
Q Consensus 422 ~~~~~m~~ 429 (707)
+.|.++.+
T Consensus 326 ~~f~~L~~ 333 (468)
T PF10300_consen 326 EYFLRLLK 333 (468)
T ss_pred HHHHHHHh
Confidence 77777766
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.80 E-value=30 Score=40.17 Aligned_cols=84 Identities=13% Similarity=0.096 Sum_probs=46.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCChhh--HHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhc
Q 043060 306 IGGYTHTSDYKEALMLFRQMLQSNIEPNDVT--FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383 (707)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 383 (707)
+.+|...|+|.+|+.+-.++... -|... -..+..-+...++.-+|-++...... + ..-.+..|++.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s------d---~~~av~ll~ka 1039 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS------D---PEEAVALLCKA 1039 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc------C---HHHHHHHHhhH
Confidence 34456678888888887776431 12221 13344445555555555444443222 1 23345667777
Q ss_pred CCHHHHHHHHhcCCCCCh
Q 043060 384 GNIKAAEQVFDGMGYKTL 401 (707)
Q Consensus 384 g~~~~A~~~~~~~~~~~~ 401 (707)
..+++|.++-......|.
T Consensus 1040 ~~~~eAlrva~~~~~~d~ 1057 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAKRDDI 1057 (1265)
T ss_pred hHHHHHHHHHHhcccchH
Confidence 778888877766554443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.3 Score=29.99 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
.+|..+...+...|++++|...++++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35667777788888888888888888887774
|
... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.31 Score=30.53 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 043060 506 IWTSLLGACRVHGRLELGESVAKHLLEL 533 (707)
Q Consensus 506 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 533 (707)
+|..|...|...|++++|++++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678888888888888888888886644
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.89 E-value=16 Score=35.26 Aligned_cols=59 Identities=15% Similarity=0.057 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 508 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
+.....|...|.+.+|.++.++++.++|-+...+-.|.+.|+..|+--.+.+-++++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34456788999999999999999999999999999999999999999999988888754
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.78 Score=30.28 Aligned_cols=33 Identities=33% Similarity=0.596 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI 437 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 437 (707)
+|..+...|.+.|++++|+++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 466677777777777777777777777 556654
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.99 E-value=0.063 Score=46.95 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=59.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhH
Q 043060 135 FILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDD 214 (707)
Q Consensus 135 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 214 (707)
.++..+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666667777888888888888776666788888899999988888888888874432 333456666666777777
Q ss_pred HHHHHHhC
Q 043060 215 ARQLFDEM 222 (707)
Q Consensus 215 A~~l~~~m 222 (707)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77777666
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.98 E-value=1.2 Score=38.78 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=26.5
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
..++.+.++.++.-+.-+.|..+..-..-+..+...|+|.+|.++++.+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445555555555555555555555555555555555555555555554443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.66 E-value=2.5 Score=40.83 Aligned_cols=102 Identities=22% Similarity=0.285 Sum_probs=74.8
Q ss_pred HhCCCCchhhhhhhchhhcccCCCChHHHHHHHhcCCC-------CCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCC
Q 043060 55 KTGLHNTQFALSKLIEICAVSPFGDLSYALLVFETIRE-------PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFV 127 (707)
Q Consensus 55 ~~~~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 127 (707)
..|...+..+...++ ..-....+++++...+-.+.+ |+...+ +.++-+. .-++++++.++..=++.|+-
T Consensus 57 ~~g~~~s~~~Vd~~V--~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLV--DVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred hcCCCcceeehhhhh--hccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccc
Confidence 345566667777777 666677889999888777653 222211 2233332 23778899998888889999
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 043060 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLG 160 (707)
Q Consensus 128 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 160 (707)
||.++++.++..+.+.+++.+|.++...|+...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888877654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.64 E-value=11 Score=37.49 Aligned_cols=136 Identities=15% Similarity=0.249 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHhHHHHHhc--cC----CchHHHHHHHHHHHhCCCC--CcHHHHhHHhhHHHhcCCH
Q 043060 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAY--LG----ALDLGKWIHAYIDKNHQKL--NNVSLWTSLIDMYAKCGNI 386 (707)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~y~~~g~~ 386 (707)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|.+..+.. ++...+.+|+.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556778888888888887777654433322 11 2345666666666654432 122222222211 11111
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHhccCC--HHHHHHHHHHh
Q 043060 387 KAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI--TFVGVLSACNHAGL--LDIGRQYFNAM 462 (707)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~~ 462 (707)
+. -.+.+...|+.+.+.|+..+.. ....++..+..... +.++.++++.+
T Consensus 156 e~---------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EE---------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HH---------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 11 1345667777777777665544 33333333322222 44677777777
Q ss_pred HHhcCCCCChHHHHHHHH
Q 043060 463 IQDYKISPKLQHYGCMVD 480 (707)
Q Consensus 463 ~~~~~~~p~~~~~~~li~ 480 (707)
.+. ++++...+|..+.-
T Consensus 209 ~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 209 KKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHc-CCccccccccHHHH
Confidence 665 77777777665543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.49 E-value=0.93 Score=27.72 Aligned_cols=32 Identities=22% Similarity=0.437 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 435 (707)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3577777888888888888888888877 5554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.20 E-value=1.6 Score=42.22 Aligned_cols=63 Identities=25% Similarity=0.283 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 504 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
..++..++..+...|+.+.+...++++++.+|-+...|..++.+|.+.|+...|+..++.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345566777777888888888888888888888888888888888888888888888888765
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.19 E-value=3.6 Score=40.74 Aligned_cols=144 Identities=11% Similarity=0.134 Sum_probs=80.2
Q ss_pred CCCCcchHHHHHhhccC-----hHHHHHHHHHHHHhCCCCchhhhhhhchhhcccCC----CChHHHHHHHhcCCC----
Q 043060 26 KLLQNQPSLALLSKCTN-----MQNIKQVHSQIIKTGLHNTQFALSKLIEICAVSPF----GDLSYALLVFETIRE---- 92 (707)
Q Consensus 26 ~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~----g~~~~A~~~f~~~~~---- 92 (707)
.......++.+|..-.. +.....+++.+.+.|+..+.+++-+..-+...... -....|..+|+.|.+
T Consensus 56 r~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f 135 (297)
T PF13170_consen 56 RGNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF 135 (297)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc
Confidence 33445666666666544 56667888899999998887776654411222111 235567777777763
Q ss_pred ---CCcchHHHHHHHHHcCCCc----hHHHHHHHHHHHCCCCCCcc--cHHHHHHHHhccCC--hHHHHHHHHHHHHhCC
Q 043060 93 ---PNQVIWNNIIRGHSLSSSP----VVAIKFYVRMILSGFVPNTY--TFPFILKSCAKISA--ISEGKQIHAHVLKLGL 161 (707)
Q Consensus 93 ---~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~ 161 (707)
++-..+.+|+.. ..+++ +.+..+|+.+...|+..+.. ..+.++..+....+ ...+..+++.+.+.|+
T Consensus 136 LTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ 213 (297)
T PF13170_consen 136 LTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGV 213 (297)
T ss_pred ccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC
Confidence 344455555544 33333 34555666666666555332 33333333322222 3356666777777776
Q ss_pred CCChhHHHHH
Q 043060 162 ESDPFVHTSL 171 (707)
Q Consensus 162 ~~~~~~~~~l 171 (707)
+.....|..+
T Consensus 214 kik~~~yp~l 223 (297)
T PF13170_consen 214 KIKYMHYPTL 223 (297)
T ss_pred ccccccccHH
Confidence 6655555443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.09 E-value=1.5 Score=39.89 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=31.1
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 499 EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 499 ~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
.+.|+ +.++|-|.--+...|+++.|.+.|+-.++++|...-+...-+-.+.-.||+.-|.+-+..-
T Consensus 93 ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 93 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHH
Confidence 34444 4444444444445555555555555555555544444444444444445555444444333
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.06 E-value=15 Score=32.24 Aligned_cols=86 Identities=21% Similarity=0.120 Sum_probs=50.6
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHH
Q 043060 447 NHAGLLDIGRQYFNAMIQDYKISPKL-QHYGCMVDLLGRAGLFDEAEALLKTME-MKPDAAIWTSLLGACRVHGRLELGE 524 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~ 524 (707)
...++.+++..++..+. -+.|.. ..-..-...+.+.|++.+|..+|+++. -.|....-.+|+..|....+-..=.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 45556666666666664 333432 222223445677888888888888873 2344555566666666655444455
Q ss_pred HHHHHHHccCC
Q 043060 525 SVAKHLLELEP 535 (707)
Q Consensus 525 ~~~~~~~~~~p 535 (707)
...+++++.++
T Consensus 98 ~~A~evle~~~ 108 (160)
T PF09613_consen 98 RYADEVLESGA 108 (160)
T ss_pred HHHHHHHhcCC
Confidence 55666666665
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.01 E-value=2 Score=36.86 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=40.8
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
..++.++++.+++.+.-+.|+.+..-..-+..+...|+|+||.++++.+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 367777777777777777777777777777777788888888888877776654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=88.77 E-value=13 Score=31.21 Aligned_cols=59 Identities=12% Similarity=0.168 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
...+..+..+|+-+.-.+++.++.. .-+|++.....+..||.+.|+..++.+++.++-+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3345556666666666666666654 2356666666677777777777777777666654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.73 E-value=78 Score=40.08 Aligned_cols=158 Identities=13% Similarity=0.072 Sum_probs=90.7
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhCCChhHHHHHHhc-CCCCCeehHHHHHHHHHhCCChh
Q 043060 137 LKSCAKISAISEGKQIHAHVLKLGL--ESDPFVHTSLINMYAQNGELESARLVFNK-SSLRDAVSYTALITGYASRGYLD 213 (707)
Q Consensus 137 l~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~ 213 (707)
..+--+.+.+.+|...++.-..... ......+-.+...|+.-+++|....+... ...+ +...-|-.....|++.
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccHH
Confidence 3344566777777777776311100 11123344455588888888877766653 2222 2334455566789999
Q ss_pred HHHHHHHhCccccCCCCCC-HhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHH-HHHHHHHhcCCHHHHHHHH
Q 043060 214 DARQLFDEMPIREENFVPN-ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTN-ALIDMYSKCGDLVKARDLF 291 (707)
Q Consensus 214 ~A~~l~~~m~~~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~ 291 (707)
.|...|+.+ .+..|+ ..+++-++......|.++...-..+-.... ..+....++ .=+.+--+.++++..+...
T Consensus 1467 da~~Cye~~----~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1467 DAAACYERL----IQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHh----hcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 999999998 445555 557777777666667766655543333322 223333333 2334446677777666665
Q ss_pred HhcCCCChhhHHHH
Q 043060 292 ESIEKRDVISWNVM 305 (707)
Q Consensus 292 ~~~~~~~~~~~~~l 305 (707)
. .++...|.+.
T Consensus 1542 ~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVE 1552 (2382)
T ss_pred h---cccccchhHH
Confidence 5 5566666655
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.58 E-value=46 Score=37.23 Aligned_cols=174 Identities=13% Similarity=0.047 Sum_probs=98.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhh----HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhcc
Q 043060 272 NALIDMYSKCGDLVKARDLFESIEKRDVIS----WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347 (707)
Q Consensus 272 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 347 (707)
..-+++..+...++.|..+-+.-..+ ... .....+-+.+.|++++|...|-+-... +.|. .++.-+...
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 34556666666677776665543322 111 222334456788888888888776542 3332 234444444
Q ss_pred CCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 043060 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA-SWNAMISGLAMHGKADKALSLFSR 426 (707)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 426 (707)
.....-..+++.+.+.|.. +...-+.|+.+|.+.++.+.-.++.+........ -....+..+.+.+-.++|..+-.+
T Consensus 411 q~IknLt~YLe~L~~~gla--~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA--NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHcccc--cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 4455555666777777777 6667788999999999999888888776521111 123344445555555555544443
Q ss_pred HHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHh
Q 043060 427 MIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAM 462 (707)
Q Consensus 427 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 462 (707)
... ....... .+...+++++|.++++.+
T Consensus 489 ~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred hcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 322 1222222 233456666666666654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.37 E-value=6.6 Score=35.57 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh------HH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI--TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL------QH 474 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~ 474 (707)
.+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+.....++........|. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34455555666666666666666666554444443 34455555556666666665555543321111111 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC
Q 043060 475 YGCMVDLLGRAGLFDEAEALLKTM 498 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~ 498 (707)
|..|. +...+++.+|-+.|-..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 22222 23467777777777665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.33 E-value=24 Score=33.61 Aligned_cols=229 Identities=16% Similarity=0.222 Sum_probs=130.4
Q ss_pred CHHHHHHHHHhcCC----C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc---CC--CCChhhHHhHHHHHhccCCc
Q 043060 283 DLVKARDLFESIEK----R---DVISWNVMIGGYTHTSDYKEALMLFRQMLQS---NI--EPNDVTFLSVLPACAYLGAL 350 (707)
Q Consensus 283 ~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~t~~~ll~~~~~~~~~ 350 (707)
+.++|+.-|+++.+ + ...+.-.+|..+.+.|++++.++.|.+|+.- .+ .-...+.++++...+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45555555555432 1 2234445677777777777777777776531 11 12334566666666655555
Q ss_pred hHHHHHHHHHHHh----C-CCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC--------CC-------hHHHHHHHHH
Q 043060 351 DLGKWIHAYIDKN----H-QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY--------KT-------LASWNAMISG 410 (707)
Q Consensus 351 ~~a~~~~~~~~~~----~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~~ 410 (707)
+.-...++.-... . ... -..+-+-|...|...|.+.+-.+++.++.. .| ...|..=|..
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRL-WFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERL-WFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred HHHHHHHHHHHHHHHhhhccee-eeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 5555555433221 1 111 122345677788888888877777776521 11 2367777888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh-----ccCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHH
Q 043060 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN-----HAGLLDIGRQYFNAMIQDYKISPKL-----QHYGCMVD 480 (707)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~ 480 (707)
|..+.+-.+-..+|++.+.-.-.........++.-|. +.|.+++|-.-|-++.+.|.-..++ .-|-.|.+
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLAN 280 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 8888888888888888765322222334456666664 5688888876555555544433222 23556667
Q ss_pred HHHHcCCHHHHHHHHHh--C-CCC--CCHHHHHHHHHHHHhc
Q 043060 481 LLGRAGLFDEAEALLKT--M-EMK--PDAAIWTSLLGACRVH 517 (707)
Q Consensus 481 ~~~~~g~~~~A~~~~~~--~-~~~--p~~~~~~~ll~~~~~~ 517 (707)
++.+.|-- -|+. . |.+ |.......|+.+|-..
T Consensus 281 MLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 281 MLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhcc
Confidence 77776621 1111 1 233 4566777888888654
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.03 E-value=5.1 Score=35.70 Aligned_cols=65 Identities=14% Similarity=0.220 Sum_probs=41.8
Q ss_pred CCCCC-HHHHHHHHHHHHhcC-----------ChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 499 EMKPD-AAIWTSLLGACRVHG-----------RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 499 ~~~p~-~~~~~~ll~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
.++|+ ..++..+..++..++ .+++|...|+++.+.+|.| ..|..-+.+. ++|-+++.++.+
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~ 135 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHK 135 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHH
Confidence 45676 456666666665543 2677788888888899977 5666555554 368888888888
Q ss_pred CCCc
Q 043060 567 KGMK 570 (707)
Q Consensus 567 ~~~~ 570 (707)
++..
T Consensus 136 ~~~~ 139 (186)
T PF06552_consen 136 QGLG 139 (186)
T ss_dssp SSS-
T ss_pred HHhh
Confidence 7763
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=87.88 E-value=3.4 Score=28.54 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=37.1
Q ss_pred hHHHHHHHhhhcCChhhHHHHHHHHhhCCCccCCcccEEeECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCC
Q 043060 540 AYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGF 616 (707)
Q Consensus 540 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 616 (707)
....++-++.+.|++++|.++.+.+.+. .|...++......+.+.|.+.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 4567888999999999999999998863 34455555555667777777763
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.86 E-value=22 Score=36.42 Aligned_cols=67 Identities=18% Similarity=0.294 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC----CCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEP----ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 503 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
...+|..++..+++.|+++.|...+.++...++ ..+.....-+..+...|+.++|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 377899999999999999999999999988652 2567788889999999999999999988887443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.80 E-value=51 Score=36.80 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=17.1
Q ss_pred chhHHHHHHH-----hhhcCChhhHHHHHHHH
Q 043060 538 PGAYVLLSNM-----YAGAGRWDDVATIRTRL 564 (707)
Q Consensus 538 ~~~~~~l~~~-----~~~~g~~~~a~~~~~~m 564 (707)
..++..|.++ +...|+|++|.+.++++
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3445544443 57789999998777664
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.27 E-value=23 Score=32.19 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHCCCCCCHhHHH--HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH-----HHHHHHHcCCHHHH
Q 043060 419 KALSLFSRMIGEGLQPDDITFV--GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC-----MVDLLGRAGLFDEA 491 (707)
Q Consensus 419 ~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A 491 (707)
+.....+++....-+....++. .+...+...+++++|..-++..... |....+.. |.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5555555665532121122222 2344567788888888887765432 33344443 34567788999999
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 492 EALLKTMEMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 492 ~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
++.++... .++ ......-.+.+...|+-++|+..|+++++.++.
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99888753 122 222334456788899999999999999888753
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.94 E-value=21 Score=31.78 Aligned_cols=133 Identities=12% Similarity=0.132 Sum_probs=77.4
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhC-CChhHHHHHHhcCC
Q 043060 115 IKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPF-VHTSLINMYAQN-GELESARLVFNKSS 192 (707)
Q Consensus 115 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~-g~~~~A~~~f~~~~ 192 (707)
++..+.+.+.+++|+...+..++..+.+.|.+..-. +++..++-+|.. +-..|++.-.+. .-..-|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 345556667788888888888999988888765444 344445444443 333333322111 11233444444443
Q ss_pred CCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHH
Q 043060 193 LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEG 261 (707)
Q Consensus 193 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 261 (707)
..+..++..+...|++-+|+++.+... + -+......++.+..+.+|...-..++.....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~----~--~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYH----K--VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcC----C--cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677888889999999999988752 1 1222234455665566665555555554444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.85 E-value=3.9 Score=39.65 Aligned_cols=76 Identities=14% Similarity=0.196 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCChhhHHh
Q 043060 268 LHVTNALIDMYSKCGDLVKARDLFESIEKR---DVISWNVMIGGYTHTSDYKEALMLFRQMLQ-----SNIEPNDVTFLS 339 (707)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 339 (707)
..++..++..+..+|+.+.+...++++... |...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456788999999999999999999988754 667899999999999999999999998865 578887666544
Q ss_pred HHHH
Q 043060 340 VLPA 343 (707)
Q Consensus 340 ll~~ 343 (707)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4333
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.68 E-value=1.1 Score=27.66 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=18.6
Q ss_pred HHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHH
Q 043060 359 YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE 390 (707)
Q Consensus 359 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 390 (707)
..++..+. +..+|+.|...|...|++++|+
T Consensus 4 kAie~~P~--n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPN--NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCC--CHHHHHHHHHHHHHCcCHHhhc
Confidence 34444444 6666777777777777776664
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.39 E-value=5 Score=39.00 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 506 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
..+.|-.++.+.++++.|.++.+.++.+.|+++.-+.-.+-+|.+.|.+..|..=++.-.++-.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 4566777889999999999999999999999999899999999999999999998888776543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.12 E-value=1.8 Score=26.23 Aligned_cols=31 Identities=19% Similarity=0.495 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPD 435 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 435 (707)
.|..+...|...|++++|++.|++..+ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 456667777777888888888877776 4554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.03 E-value=2.9 Score=40.87 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=63.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc
Q 043060 407 MISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485 (707)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 485 (707)
-.+-|.++|.+++|+..|.+.+. +.| |.+++..-..+|.+...+..|..-.+.++.- -..-...|+.-+.+-...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999888 777 8899999999999999998888777766541 001112233323333334
Q ss_pred CCHHHHHHHHHhC-CCCCC
Q 043060 486 GLFDEAEALLKTM-EMKPD 503 (707)
Q Consensus 486 g~~~~A~~~~~~~-~~~p~ 503 (707)
|...||.+-++.. .++|+
T Consensus 179 g~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPK 197 (536)
T ss_pred hhHHHHHHhHHHHHhhCcc
Confidence 5566666655553 56676
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.71 E-value=1.7 Score=27.98 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 506 IWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 506 ~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 444555555555555555555555543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.63 E-value=1 Score=25.73 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=18.2
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHH
Q 043060 539 GAYVLLSNMYAGAGRWDDVATIRT 562 (707)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~a~~~~~ 562 (707)
.+...|+.++...|++++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456677888888888888887764
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.18 E-value=10 Score=34.37 Aligned_cols=95 Identities=13% Similarity=0.049 Sum_probs=67.3
Q ss_pred HHHHhHHhhHHHhcCCHHHHHHHHhcCCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHH---
Q 043060 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT------LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFV--- 440 (707)
Q Consensus 370 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--- 440 (707)
...+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+....--.+......
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3467789999999999999999999986552 2367778888889999999988888776532222222211
Q ss_pred HHHH--HHhccCCHHHHHHHHHHhHH
Q 043060 441 GVLS--ACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 441 ~ll~--a~~~~g~~~~a~~~~~~~~~ 464 (707)
.+.. ++...+++.+|-+.|-....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 1222 23457899999888877654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.02 E-value=34 Score=32.07 Aligned_cols=62 Identities=10% Similarity=0.048 Sum_probs=35.4
Q ss_pred HHHHHHHHc-CCHHHHHHHHHhC-----CCCCCHHHHHHHH---HHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 477 CMVDLLGRA-GLFDEAEALLKTM-----EMKPDAAIWTSLL---GACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 477 ~li~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~ll---~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
.+.+.|... .++++|+..++.. +-+.+...-..++ .--...+++.+|+.+|+++....-+|+
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 445555544 5667777777665 1112222222333 233556888999999998877554443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.74 E-value=23 Score=33.32 Aligned_cols=57 Identities=9% Similarity=-0.094 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcc------CCCCchhHHHHHHHhhhcCChhhHHHHHHH
Q 043060 507 WTSLLGACRVHGRLELGESVAKHLLEL------EPENPGAYVLLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 507 ~~~ll~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 563 (707)
+......+.+...+++|-..+.+-... -|.--..|+..+-+|....++..|.+.++.
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 333444555555555555544443221 122223466666666667777777666544
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=84.43 E-value=2 Score=25.81 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=12.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCC
Q 043060 511 LGACRVHGRLELGESVAKHLLELEP 535 (707)
Q Consensus 511 l~~~~~~g~~~~A~~~~~~~~~~~p 535 (707)
..++.+.|+.++|.+.++++++..|
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3344444555555555555554444
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=84.18 E-value=11 Score=31.81 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhc---CChhHHHHHHHHHHc-cCCC-CchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 504 AAIWTSLLGACRVH---GRLELGESVAKHLLE-LEPE-NPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 504 ~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
..+--.+..++.+. .+..+++.+++.+++ -.|. .....+.|+-++.+.|+++.++++.+...+
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 33333444444443 345566667777665 2232 233445566667777777777777766655
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.52 E-value=0.17 Score=44.14 Aligned_cols=84 Identities=13% Similarity=0.185 Sum_probs=41.0
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043060 101 IIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180 (707)
Q Consensus 101 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 180 (707)
+|..+.+.+.+.....+++.+...+...+....+.++..|++.+..+....+++ ..+.+-...++..+-+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Confidence 345555555666666666666654433445555566666666655455544443 1111222344444555555
Q ss_pred hhHHHHHHhcC
Q 043060 181 LESARLVFNKS 191 (707)
Q Consensus 181 ~~~A~~~f~~~ 191 (707)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555544443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=83.23 E-value=2.3 Score=29.43 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=25.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 043060 509 SLLGACRVHGRLELGESVAKHLLELEPENPGA 540 (707)
Q Consensus 509 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 540 (707)
.+.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45667899999999999999999999998643
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.22 E-value=1.9 Score=27.70 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=24.5
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 539 GAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4788999999999999999999999875
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.03 E-value=15 Score=33.25 Aligned_cols=61 Identities=16% Similarity=0.113 Sum_probs=41.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 478 MVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
-..++.+.+.++.|++-..+. .+.|. .....--..+|.+...++.|++-|+++++.+|...
T Consensus 140 raaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 140 RAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 344566677777777665553 45554 33333345577788889999999999999999754
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=82.38 E-value=2.5 Score=24.59 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 043060 507 WTSLLGACRVHGRLELGESVAKHLLELEP 535 (707)
Q Consensus 507 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 535 (707)
|..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44444555555555555555555555444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.36 E-value=1.4 Score=26.49 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=25.8
Q ss_pred hHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 540 AYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 540 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
++..++.+|.+.|++++|.+.++++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 56789999999999999999999998754
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.21 E-value=14 Score=31.89 Aligned_cols=85 Identities=18% Similarity=0.085 Sum_probs=46.3
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHH
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYKISPKL-QHYGCMVDLLGRAGLFDEAEALLKTMEMKP-DAAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A 523 (707)
-...++.+++..++..|. -+.|+. ..-..-+-.+.+.|++++|..+|++..-.+ ....-..|+..|.....-..=
T Consensus 20 aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred HHhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH
Confidence 345778888888888775 344433 222223445677888888888888874333 333334455555443322223
Q ss_pred HHHHHHHHcc
Q 043060 524 ESVAKHLLEL 533 (707)
Q Consensus 524 ~~~~~~~~~~ 533 (707)
.....++++.
T Consensus 97 r~~A~~~le~ 106 (153)
T TIGR02561 97 HVHADEVLAR 106 (153)
T ss_pred HHHHHHHHHh
Confidence 3334444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.94 E-value=24 Score=38.63 Aligned_cols=183 Identities=16% Similarity=0.257 Sum_probs=104.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh----------hHHhHHHHHhccCCchHHHHHHHHHHH-hCCCCCc
Q 043060 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV----------TFLSVLPACAYLGALDLGKWIHAYIDK-NHQKLNN 369 (707)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~ 369 (707)
+-..++-.|....+++..+++.+.+... ||.. .|.-.++---+-|+-+.|..+.--+++ .|...|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap- 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP- 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-
Confidence 3445666777788888888888887653 3322 222223222344666666665554444 344332
Q ss_pred HHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhH---HHHHHHHH
Q 043060 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT---FVGVLSAC 446 (707)
Q Consensus 370 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~ 446 (707)
++||-||++ ++.|- +-+.|...+..+.|.+.|++..+ +.|+..+ +..|+.+-
T Consensus 279 --------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 279 --------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred --------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 456667653 22221 11234445566788899999888 7887653 33444332
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043060 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESV 526 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 526 (707)
.+ .++.-.++ +. .--.|-.+++|.|.++.-.+.|+- . ..+.+-.-.+|+.+|.++
T Consensus 334 G~--~Fens~El-q~------------IgmkLn~LlgrKG~leklq~YWdV-------~---~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 334 GE--HFENSLEL-QQ------------IGMKLNSLLGRKGALEKLQEYWDV-------A---TYFEASVLANDYQKAIQA 388 (1226)
T ss_pred hh--hccchHHH-HH------------HHHHHHHHhhccchHHHHHHHHhH-------H---HhhhhhhhccCHHHHHHH
Confidence 21 11111111 00 111244567888888887777653 2 234455567788889999
Q ss_pred HHHHHccCCCC
Q 043060 527 AKHLLELEPEN 537 (707)
Q Consensus 527 ~~~~~~~~p~~ 537 (707)
.+.|.++.|+.
T Consensus 389 ae~mfKLk~P~ 399 (1226)
T KOG4279|consen 389 AEMMFKLKPPV 399 (1226)
T ss_pred HHHHhccCCce
Confidence 99999888764
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=81.82 E-value=2.7 Score=25.56 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=25.5
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 539 GAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
.+|..++.+|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4788999999999999999999998875
|
... |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=80.87 E-value=26 Score=27.81 Aligned_cols=85 Identities=15% Similarity=0.116 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 043060 250 ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329 (707)
Q Consensus 250 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 329 (707)
++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-++-.. +.|..+++..-+..|...|
T Consensus 22 qEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 22 QEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 4455555544444311 222222233456788999999999999988999999877654 6777777777777777766
Q ss_pred CCCChhhHH
Q 043060 330 IEPNDVTFL 338 (707)
Q Consensus 330 ~~p~~~t~~ 338 (707)
.|...+|.
T Consensus 99 -~p~lq~Fa 106 (115)
T TIGR02508 99 -DPRLQTFV 106 (115)
T ss_pred -CHHHHHHH
Confidence 45444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=80.42 E-value=1e+02 Score=34.40 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=34.9
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccC
Q 043060 94 NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKIS 144 (707)
Q Consensus 94 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 144 (707)
+...| ++|--+.|.|++++|.++..+... +.......|...+..+....
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCC
Confidence 44456 567788999999999999965553 34566678888888887653
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=80.39 E-value=17 Score=37.47 Aligned_cols=120 Identities=20% Similarity=0.225 Sum_probs=62.1
Q ss_pred HcCCHHHHH-HHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 043060 413 MHGKADKAL-SLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491 (707)
Q Consensus 413 ~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (707)
..|+.-.|- +++.-+....-.|+.+-+.+.+ ..+.|+++.+.+.+....+ -+.....+..+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 345544443 3444444443445544433333 4556667766666665543 3334445556666666666666666
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 492 EALLKTM-EMK-PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 492 ~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
..+-+.| +.+ -++.+...-.......|-++++.-.+++++.+.|+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 6666555 111 12333333333344455566666666666666654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 68.7 bits (166), Expect = 5e-12
Identities = 25/196 (12%), Positives = 56/196 (28%), Gaps = 8/196 (4%)
Query: 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTS 375
+ A L Q+ P + +L +LD+ + + L +
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRL-LA 132
Query: 376 LIDMYAKCGNIKAAEQVFDGMGYK-------TLASWNAMISGLAMHGKADKALSLFSRMI 428
+ A + + TL +NA++ G A G + + + +
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 429 GEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488
GL PD +++ L + + + + ++ RA +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 489 DEAEALLKTMEMKPDA 504
+ T + P
Sbjct: 253 KAVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.8 bits (148), Expect = 6e-10
Identities = 14/130 (10%), Positives = 34/130 (26%), Gaps = 9/130 (6%)
Query: 128 PNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLV 187
P +L+ ++ + + L + +L A +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 188 FN-------KSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240
K L Y A++ G+A +G + + + ++ P+ + L
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV--KDAGLTPDLLSYAAAL 207
Query: 241 SACAHMGSLE 250
Sbjct: 208 QCMGRQDQDA 217
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.0 bits (146), Expect = 1e-09
Identities = 16/122 (13%), Positives = 37/122 (30%), Gaps = 7/122 (5%)
Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDL 290
P E + +L SL++ L A L A L
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 291 FESIEKR-------DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343
+ + +N ++ G+ +KE + + + + + P+ +++ + L
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 344 CA 345
Sbjct: 210 MG 211
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 1e-11
Identities = 92/552 (16%), Positives = 171/552 (30%), Gaps = 140/552 (25%)
Query: 24 PYKLLQNQPSL---ALLSKCTNMQNIKQV----HSQIIKTGLHNTQFALSKLIEICAVSP 76
P K Q QPS+ + + + N QV + ++ + AL +L V
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP-YLKLRQALLELRPAKNVLI 155
Query: 77 FGDLSY--ALLVFETIRE-------PNQVIWNNIIRGHSLSSSPVVAI--KFYVRMILSG 125
G L + + ++ W N+ + S V+ + K ++ +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL--KNCNSPETVLEMLQKLLYQIDPNW 213
Query: 126 FVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLI--NMYAQNGELES 183
+ ++ L+ I + L+ L+S P+ + L+ N+ +
Sbjct: 214 TSRSDHSSNIKLR-------IHSIQA----ELRRLLKSKPYENCLLVLLNVQ-------N 255
Query: 184 ARLV--FNKSS--L---RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTV 236
A+ FN S L R L + LD P+E
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH----------HSMTLTPDEV-- 303
Query: 237 VTVLSACAHMGSLEL------GN-WVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARD 289
++L +L N S+I ++ A D + V
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSII-----AESIRDGLATWDNWKH----VNCDK 354
Query: 290 LFESIEKRDVISWNVMIGGYTHTSDYK---EALMLFR----------QMLQSNIEPNDVT 336
L IE S NV+ ++Y+ + L +F ++ ++ +DV
Sbjct: 355 LTTIIES----SLNVL-----EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV- 404
Query: 337 FLSVLPACAYLGALDLGKW-------IHA-YIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
+ V+ ++ K I + Y++ + N +L S++D Y NI
Sbjct: 405 -MVVVNKLHKYSLVE--KQPKESTISIPSIYLELKVKLENEYALHRSIVDHY----NIPK 457
Query: 389 AEQVFDGMGYKTLASWNAMISGLAMH-GKADKA--LSLFS------RMIGEGLQPDDITF 439
FD S + H + ++LF R + + ++ D +
Sbjct: 458 T---FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 440 VGVLSACNHAGLLDIGRQY-------FNAMIQDY-----KISPKLQHYGCMVDLLGRAGL 487
S N L + Y + ++ KI L DLL R L
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT-DLL-RIAL 572
Query: 488 FDEAEALLKTME 499
E EA+ +
Sbjct: 573 MAEDEAIFEEAH 584
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 3e-07
Identities = 57/350 (16%), Positives = 114/350 (32%), Gaps = 90/350 (25%)
Query: 4 PPSSLTLSPSILHFPPSSDPPYKLLQNQP---SL--ALLSKCTNM-QNIKQVHSQIIKTG 57
P +L L P P ++L P S+ + N K V+
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD----- 353
Query: 58 LHNTQFALSKLIEIC--AVSP------FGDLSYALLVF-ETIREPNQVI---WNNIIRGH 105
L+ +IE + P F LS VF + P ++ W ++
Sbjct: 354 ------KLTTIIESSLNVLEPAEYRKMFDRLS----VFPPSAHIPTILLSLIWFDV---- 399
Query: 106 SLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAH--VLKLGLES 163
IK V ++++ S + I + LK+ LE+
Sbjct: 400 ---------IKSDVMVVVNKLH---------KYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQ--LFDE 221
+ +H S+++ Y +S L+ D Y+ + G+ +L +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYL---DQYFYSHI--GH----HLKNIEHPERMTL 492
Query: 222 MPIREENFVPNESTVVTVLSACAHMGSL-----ELGNWVCSLIEGHGLGSNLHVTNALID 276
+ +F E + +A GS+ +L + + + L NA++D
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL--VNAILD 550
Query: 277 MYSKCG-DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQM 325
K +L+ ++ D++ +M + ++EA +Q+
Sbjct: 551 FLPKIEENLICSKYT-------DLLRIALM---AEDEAIFEEA---HKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 1e-04
Identities = 79/530 (14%), Positives = 154/530 (29%), Gaps = 178/530 (33%)
Query: 291 FESIEK----RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN------IEPNDVTFLSV 340
FE+ E +D++S V + D K+ + + +L + + V+
Sbjct: 9 FETGEHQYQYKDILS--VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 341 LPAC----------AYLG-ALDLG-KWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN-IK 387
L ++ L + K++ + I + S+ T MY + + +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI---KTEQRQPSMMT---RMYIEQRDRLY 120
Query: 388 AAEQVFDGMG------YKTLASWNAMIS-----GLAMHGKADKALSLFSRMIGEGLQPDD 436
QVF Y L A++ + + G ++G G
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLR--QALLELRPAKNVLIDG-----------VLGSGKT--- 164
Query: 437 ITFVGVLSACNHAGL----------LDIGRQYFN----AMIQD--YKISPKLQHYGCMVD 480
L C + L++ M+Q Y+I P
Sbjct: 165 ---WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS-RSDHS 220
Query: 481 LLGRAGLFDEAEALLKTMEMKP------------DAAIWTSLLGACRV------------ 516
+ + L + ++ KP +A W + +C++
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 517 ------------HGRLELGESVAKHLL---------ELEPE----NPGAYVLLSNMYA-- 549
H + L K LL +L E NP ++ A
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP----RRLSIIAES 336
Query: 550 ---GAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQS-KHIYEMLD 605
G WD + DK + + IE S+ + + P + +++ L
Sbjct: 337 IRDGLATWD---NWKHVNCDK-LTTI-----IES-SL-------NVLEPAEYRKMFDRL- 378
Query: 606 EIDALLEKSGFVPDTSEVL----YDMDEEWKEGALSHHSEKLAIAYGLISTKP-GTTIRI 660
++ S + +L +D+ + + KL Y L+ +P +TI I
Sbjct: 379 ---SVFPPS--AHIPTILLSLIWFDVIKSDVMVVV----NKLH-KYSLVEKQPKESTISI 428
Query: 661 VK-NLRVCGNCHSATKLISKIFNREIIARDR-NRFHHFKDGNCSCND-YW 707
L + + L +R I+ + D D Y+
Sbjct: 429 PSIYLELKVKLENEYAL-----HRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 7e-10
Identities = 39/256 (15%), Positives = 73/256 (28%), Gaps = 20/256 (7%)
Query: 311 HTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNV 370
+ Y++ + +++ S+ P V AYL K+ + +
Sbjct: 11 YIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLA---QRKYGVVLDEIKPSSAPEL 65
Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMI-----SGLAMHGKADKALSLFS 425
+ A A D +++ N S D AL
Sbjct: 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125
Query: 426 RMIGEGLQPDDITFVGVLSACNHA-GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484
Q D + + + LD+ R+ M + + Q V L
Sbjct: 126 -------QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG 178
Query: 485 AGLFDEAEALLKTMEMK--PDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542
+A + + M K P + GR E E V + L+ + +P +
Sbjct: 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238
Query: 543 LLSNMYAGAGRWDDVA 558
L + G+ +V
Sbjct: 239 NLVVLSQHLGKPPEVT 254
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 2e-09
Identities = 54/316 (17%), Positives = 109/316 (34%), Gaps = 60/316 (18%)
Query: 272 NALIDMYSKCGDLVKARDLFE---SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
+ L ++Y + G L +A + + ++ + + + D + A+ + LQ
Sbjct: 71 SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ- 129
Query: 329 NIEPNDVTFLSVLPACAY--LGAL--DLGKW---IHAY---IDKNHQKLNNVSLWTSLID 378
P+ C LG L LG+ Y I+ N W++L
Sbjct: 130 -YNPDL--------YCVRSDLGNLLKALGRLEEAKACYLKAIETQP---NFAVAWSNLGC 177
Query: 379 MYAKCGNIKAAEQVFDGMGYKTLA-------SWNAMISGLAMH--GKADKALSLFSRMIG 429
++ G I A F+ K + ++ + G + D+A++ + R +
Sbjct: 178 VFNAQGEIWLAIHHFE----KAVTLDPNFLDAYINL--GNVLKEARIFDRAVAAYLRALS 231
Query: 430 EGLQPDDITFVGVLSACNHAG--LLDIGRQYFNAMIQDYK----ISPKL-QHYGCMVDLL 482
L P+ + + G + I Y+ + P Y + + L
Sbjct: 232 --LSPNHAV------VHGNLACVYYEQGL--IDLAIDTYRRAIELQPHFPDAYCNLANAL 281
Query: 483 GRAGLFDEA-EALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540
G EA + + + P A +L R G +E + + LE+ PE A
Sbjct: 282 KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341
Query: 541 YVLLSNMYAGAGRWDD 556
+ L+++ G+ +
Sbjct: 342 HSNLASVLQQQGKLQE 357
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 47/310 (15%), Positives = 95/310 (30%), Gaps = 56/310 (18%)
Query: 272 NALIDMYSKCGDLVKARDLFE---SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
L GD+ A + + + +EA + + ++
Sbjct: 105 INLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE- 163
Query: 329 NIEPNDVTFLSVLPACAYLGAL--DLGKW---IHAY---IDKNHQKLNNVSLWTSLIDMY 380
+PN A + LG + G+ IH + + + N + + +L ++
Sbjct: 164 -TQPNFAV------AWSNLGCVFNAQGEIWLAIHHFEKAVTLDP---NFLDAYINLGNVL 213
Query: 381 AKCGNIKAAEQVFDGMGYKTLA-------SWNAMISGLAMH--GKADKALSLFSRMIGEG 431
+ A + + L+ + + G D A+ + R I
Sbjct: 214 KEARIFDRAVAAYL----RALSLSPNHAVVHGNL--ACVYYEQGLIDLAIDTYRRAIE-- 265
Query: 432 LQPDDITFVGVLSACNHAG--LLDIGRQYFNAMIQDY----KISPKLQH-YGCMVDLLGR 484
LQP A + L + G Y ++ P + ++
Sbjct: 266 LQPHFP------DAYCNLANALKEKGS--VAEAEDCYNTALRLCPTHADSLNNLANIKRE 317
Query: 485 AGLFDEA-EALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542
G +EA K +E+ P+ AA ++L + G+L+ K + + P AY
Sbjct: 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377
Query: 543 LLSNMYAGAG 552
+ N
Sbjct: 378 NMGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 6e-08
Identities = 43/258 (16%), Positives = 85/258 (32%), Gaps = 65/258 (25%)
Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW---IHAY---IDKNHQKL 367
D++ A Q+ + EP++ L +L + + + H I +N
Sbjct: 14 DFEAAERHCMQLWR--QEPDNTGVLLLLSSIHF----QCRRLDRSAHFSTLAIKQNP--- 64
Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA-------SWNAMISGLAMHGKADKA 420
+++L ++Y + G ++ A + + L + + + L G + A
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYR----HALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480
+ + + PD + G L
Sbjct: 121 VQAYVSALQ--YNPDLY------CVRSDLGNL---------------------------- 144
Query: 481 LLGRAGLFDEA-EALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538
L G +EA LK +E +P+ A W++L G + L + + L+P
Sbjct: 145 -LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL 203
Query: 539 GAYVLLSNMYAGAGRWDD 556
AY+ L N+ A +D
Sbjct: 204 DAYINLGNVLKEARIFDR 221
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 18/122 (14%)
Query: 450 GLLDIGRQYFNA-----MIQDY----KISPK----LQHYGCMVDLLGRAGLFDEAEALL- 495
G +++ + + A + + P L + + D +
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSS---IHFQCRRLDRSAHFST 57
Query: 496 KTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
++ P A +++L + G+L+ +H L L+P+ Y+ L+ AG
Sbjct: 58 LAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM 117
Query: 555 DD 556
+
Sbjct: 118 EG 119
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 7e-09
Identities = 54/420 (12%), Positives = 117/420 (27%), Gaps = 62/420 (14%)
Query: 173 NMYAQNGELESARLVFNKSSLRDAVSYTALITG--YASRGYLDDARQLFDEMPIREENFV 230
+ ++A + + + + G Y + D A++ + E +
Sbjct: 175 ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE--ALMVD-- 230
Query: 231 PNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM----YSKCGDLVK 286
L + + + E + V L + +L + S +L +
Sbjct: 231 AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290
Query: 287 ARDLFESIEK--RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344
A D SI + S + + L + ++L+ I+P ++ + A
Sbjct: 291 AEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE--IDPYNLDVYPLHLAS 348
Query: 345 AYLGALDLGKW---IHAYIDKNHQKL-----NNVSLWTSLIDMYAKCGNIKAAEQVFDGM 396
+ + G+ L W ++ Y I A + F
Sbjct: 349 LH----ESGEKNKLYLIS-----NDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFS-- 397
Query: 397 GYKTLA-------SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT---FVGVLSAC 446
K+ +W A+ G+ D+A+S ++ L F+G+
Sbjct: 398 --KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGM--QH 451
Query: 447 NHAGLLDIGRQYFNAMIQDYKISPKLQH-YGCMVDLLGRAGLFDEAEALLK--------T 497
G + + +Y Y + + + A + T
Sbjct: 452 MQLGNILLANEYLQ---SSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508
Query: 498 MEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
+ AA W +L A R + L L + + ++ +Y
Sbjct: 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL 568
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 48/425 (11%), Positives = 118/425 (27%), Gaps = 59/425 (13%)
Query: 159 LGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR----DAVSYTALITGYA--SRGYL 212
G++ + + +Y + A+ + ++ L ++ L++ + +
Sbjct: 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA-LMVDAKCYEAFDQLVSNHLLTADEEW 252
Query: 213 DDARQL-FDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271
D +L + + F+ S + L+ +H L S I G L + +
Sbjct: 253 DLVLKLNYSTYSKEDAAFL--RSLYMLKLNKTSHEDELRRAEDYLSSING--LEKSSDLL 308
Query: 272 NALIDMYSKCGDLVKARDLFESIEKRD---VISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
D + + I + D + + + + + + + ++ ++
Sbjct: 309 LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD- 367
Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKW---IHAY-----IDKNHQKLNNVSLWTSLIDMY 380
P + YL + K + +D W +
Sbjct: 368 -RHPEKAVTWLAV-GIYYL---CVNKISEARRYFSKSSTMDPQF-----GPAWIGFAHSF 417
Query: 381 AKCGNIKAAEQVFDGMGYKTLA-------SWNAMISGLAMHGKADKALSLFSRMIGEGLQ 433
A G A + + + G A L
Sbjct: 418 AIEGEHDQAISAYT----TAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA--LF 471
Query: 434 PDD---ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH-----YGCMVDLLGRA 485
D + +GV + + +F + K + + + + +
Sbjct: 472 QYDPLLLNELGV--VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529
Query: 486 GLFDEA-EALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL 543
++D A +AL + + + + A + T++ L + L + P A L
Sbjct: 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589
Query: 544 LSNMY 548
L
Sbjct: 590 LKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 39/270 (14%), Positives = 72/270 (26%), Gaps = 40/270 (14%)
Query: 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW- 373
YK A + ++L PND +L A Y G + A + L N S
Sbjct: 100 YKCAAFVGEKVLDITGNPNDAFWL----AQVYC---CTGDYARAKCLLTKEDLYNRSSAC 152
Query: 374 -----TSLIDM--YAKCGNIKAAEQVFDGMGYKTLASWNAMIS-----------GLAMH- 414
L+ + + N+ F G
Sbjct: 153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212
Query: 415 -GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQ 473
D+A + + + L + + LL ++ + +Y K
Sbjct: 213 LSNFDRAKECYKEALM--VDAKCYEAFDQLVSNH---LLTADEEWDLVLKLNYSTYSKED 267
Query: 474 ------HYGCMVDLLGRAGLFDEAEALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESV 526
Y ++ AE L ++ + + V R ++
Sbjct: 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAI 327
Query: 527 AKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
+LE++P N Y L +G +
Sbjct: 328 TTKILEIDPYNLDVYPLHLASLHESGEKNK 357
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 45/282 (15%), Positives = 84/282 (29%), Gaps = 51/282 (18%)
Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA---LDLGKWIHAY-----I 360
Y T DY A L + N AC YL A + L W A
Sbjct: 127 YCCTGDYARAKCLLTKEDLYNRSS----------ACRYLAAFCLVKLYDWQGALNLLGET 176
Query: 361 DKNHQKLNNV--------------SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA---- 402
+ + N S+ +Y N A++ + + L
Sbjct: 177 NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYK----EALMVDAK 232
Query: 403 ---SWNAMISGLAMHGKADKALSL---FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGR 456
+++ ++S + + L L +S E ++ L+ +H L
Sbjct: 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292
Query: 457 QYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL-KTMEMKPDAAIWTSLLGACR 515
Y +++ + C D L F + A+ K +E+ P L A
Sbjct: 293 DYLSSI---NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASL 349
Query: 516 VH-GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
G ++ L++ PE ++ + Y + +
Sbjct: 350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISE 391
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 30/299 (10%), Positives = 61/299 (20%), Gaps = 46/299 (15%)
Query: 282 GDLVKARDLFE---SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFL 338
+ + + + + V++ GG + L + Q + P V
Sbjct: 86 ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG--LTPEQVV-- 141
Query: 339 SVLPACAYLGAL--DLGKWIHAYIDKNH-QKLN--NVSLWTSLIDMYAKCGNIKAAEQVF 393
A A L L V S ++ V
Sbjct: 142 ----AIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 197
Query: 394 DGMGYKTLA-------SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446
+ + + G + L + + GL P + A
Sbjct: 198 C----QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQV------VAI 245
Query: 447 NHAG--LLDIGRQYFNAMIQDY----KISPKLQH-YGCMVDLLGRAGLFDEA-EALLKTM 498
G + ++ ++P+ L +
Sbjct: 246 ASNGGGKQALET--VQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAH 303
Query: 499 EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
+ P S G + ++ V L P+ A
Sbjct: 304 GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQR 362
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 31/301 (10%), Positives = 63/301 (20%), Gaps = 42/301 (13%)
Query: 278 YSKCGDLVKARDLFE---SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
+ + + V++ GG + L + Q + P
Sbjct: 150 KQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPQQ 207
Query: 335 VTFLSVLPACAYLGAL--DLGKWIHA--YIDKNHQ-KLNNVSLWTSLIDMYAKCGNIKAA 389
V A A G L + + H V S ++
Sbjct: 208 VV------AIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 261
Query: 390 EQVFDGMGYKTLA-------SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGV 442
V + + + G + L + + G L P + +
Sbjct: 262 LPVLC----QAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHG--LTPQQVVAI-- 313
Query: 443 LSACNHAGLLDIGRQYFNAMIQDY----KISPKLQH-YGCMVDLLGRAGLFDEA-EALLK 496
++ G + ++P+ L +
Sbjct: 314 ---ASNGGGKQALETVQRL-LPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ 369
Query: 497 TMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
+ P+ S G + ++ V L PE A
Sbjct: 370 AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQ 429
Query: 556 D 556
Sbjct: 430 R 430
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 8e-07
Identities = 32/277 (11%), Positives = 65/277 (23%), Gaps = 37/277 (13%)
Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
V++ GG + L + Q + P V ++ L
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAHG--LTPQQVVAIASHDGGKQ----ALETVQR 124
Query: 358 A--YIDKNHQ-KLNNVSLWTSLIDMYAKCGNIKAAEQVFD---GMGYKTLASWNAMISGL 411
+ + H V S ++A V G+ + + + + G
Sbjct: 125 LLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK 184
Query: 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG--LLDIGRQYFNAMIQDY--- 466
+ L + + G L P + A G + ++
Sbjct: 185 QALETVQRLLPVLCQAHG--LTPQQV------VAIASNGGGKQALET--VQRLLPVLCQA 234
Query: 467 -KISPK----LQHYGCMVDLLGRAGLFDEA-EALLKTMEMKPD-AAIWTSLLGACRVHGR 519
++P+ + G L L + + P S G +
Sbjct: 235 HGLTPQQVVAIASNGGGKQALET---VQRLLPVLCQAHGLTPQQVVAIASNSGGKQALET 291
Query: 520 LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
++ V L P+ A
Sbjct: 292 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQR 328
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 31/284 (10%), Positives = 62/284 (21%), Gaps = 41/284 (14%)
Query: 293 SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL-- 350
+ + V++ GG + L + Q + P V A A G
Sbjct: 202 GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPQQV------VAIASNGGGKQ 253
Query: 351 DLGKW---IHAYIDKNHQ-KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA---- 402
L + + H V S ++ V +
Sbjct: 254 ALETVQRLLPVL-CQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLC----QAHGLTPQ 308
Query: 403 ---SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459
+ + G + L + + G L P + + +H G
Sbjct: 309 QVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPQQVVAI-----ASHDGGKQALETVQ 361
Query: 460 NAMIQDY----KISPKLQH-YGCMVDLLGRAGLFDEA-EALLKTMEMKPD-AAIWTSLLG 512
+ ++P+ L + + P+ S G
Sbjct: 362 RL-LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDG 420
Query: 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
+ ++ V L P+ A
Sbjct: 421 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVA 464
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 45/331 (13%), Positives = 98/331 (29%), Gaps = 62/331 (18%)
Query: 263 GLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRD---VISWNVMIGGYTHTSDYKEAL 319
GL NL V +L + + D L + ++D V IG + E
Sbjct: 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELF 76
Query: 320 MLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW----IHAY-----IDKNHQKLNNV 370
L +++ + P++ + C YL +G ++K +
Sbjct: 77 YLSHKLVD--LYPSNPVSWFAV-GCYYL---MVGHKNEHARRYLSKATTLEKTY-----G 125
Query: 371 SLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA-------SWNAMISGLAMH--GKADKAL 421
W + +A A + + GL + A
Sbjct: 126 PAWIAYGHSFAVESEHDQAMAAYF----TAAQLMKGCHLPMLYI--GLEYGLTNNSKLAE 179
Query: 422 SLFSRMIGEGLQPDDITFVGVLSACNHAG--LLDIGR-----QYFN---AMIQDYKISPK 471
FS+ + + P+D + G G ++F I+
Sbjct: 180 RFFSQALS--IAPEDPF------VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231
Query: 472 LQHYGCMVDLLGRA----GLFDEA-EALLKTMEMKPD-AAIWTSLLGACRVHGRLELGES 525
+ + +++ LG + EA + + + + P A+ ++++ + G E
Sbjct: 232 VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVD 291
Query: 526 VAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
L L ++ + +L + +
Sbjct: 292 YFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 3e-07
Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 9/157 (5%)
Query: 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL-SACNHAGLLDIGRQYFNA 461
S N + + G ++A+ L+ + + + P+ L S G L ++
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68
Query: 462 MIQDYKISPKL-QHYGCMVDLLGRAGLFDEA-EALLKTMEMKPDAAIWTSLLG-ACRVHG 518
I +ISP Y M + L A + + +++ P A S L + G
Sbjct: 69 AI---RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
Query: 519 RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555
+ + + L+L+P+ P AY L++ W
Sbjct: 126 NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 2e-04
Identities = 18/132 (13%), Positives = 48/132 (36%), Gaps = 7/132 (5%)
Query: 429 GEGLQPDDITFVGVL-SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC-MVDLLGRAG 486
G G P + L + G ++ + + ++ + P+ + +L + G
Sbjct: 1 GPGSCPTHADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQG 57
Query: 487 LFDEAEALL-KTMEMKPDAAIWTSLLG-ACRVHGRLELGESVAKHLLELEPENPGAYVLL 544
EA + + + P A S +G + ++ +++ P A+ L
Sbjct: 58 KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNL 117
Query: 545 SNMYAGAGRWDD 556
++++ +G +
Sbjct: 118 ASIHKDSGNIPE 129
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 7e-07
Identities = 32/170 (18%), Positives = 54/170 (31%), Gaps = 34/170 (20%)
Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG--LLDIGRQYFNAMIQDY-- 466
GK+ AL +++I L+ D +A G LL G+ + D+
Sbjct: 47 FLAMGKSKAALPDLTKVIA--LKMDFT------AARLQRGHLLLKQGK--LDEAEDDFKK 96
Query: 467 --KISPK----------------LQHYGCMVDLLGRAGLFDEA-EALLKTMEMKPDAAIW 507
K +P +Q + A L K +E+ A
Sbjct: 97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156
Query: 508 TSLLGACRVH-GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
L C + G S K +L+ +N A+ +S +Y G +
Sbjct: 157 RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 42/290 (14%), Positives = 80/290 (27%), Gaps = 54/290 (18%)
Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW---IHAY-----I 360
+ K AL +++ ++ + L GK +
Sbjct: 47 FLAMGKSKAALPDLTKVIA--LKMDFTAARLQR-GHLLL---KQGKLDEAEDDFKKVLKS 100
Query: 361 DKNHQ----------KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS------- 403
+ + Q K + + S + AA D K L
Sbjct: 101 NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLD----KILEVCVWDAEL 156
Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA-GLLDIGRQYFNAM 462
G+ KA+S L+ D+ +S + G ++
Sbjct: 157 RELRAECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214
Query: 463 IQ----------DYKISPKLQHYGCMVDLLGRAGLFDEA-EALLKTMEMKPDAAIWTSLL 511
++ YK KL + L R G + +A M+ +P A +T
Sbjct: 215 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS 274
Query: 512 ----GACRVH-GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
C + + +L++EP+N A + Y +D+
Sbjct: 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDE 324
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 59/432 (13%), Positives = 119/432 (27%), Gaps = 65/432 (15%)
Query: 161 LESDPFVHTSLINM---YAQNGELESARLVFNKS-SL--RDAVSYTALITGYASRGYLDD 214
+E DP N+ Y G+LE K+ + + + + S G D
Sbjct: 52 IELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTD 111
Query: 215 ARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274
A + + + + LE ++ + S
Sbjct: 112 AMFDLSVLSLNGDF------------DGASIEPMLERNLNKQAMKVLNENLSKDE--GRG 157
Query: 275 IDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
+ L +F+S + + +S+Y A L LQ D
Sbjct: 158 SQVLPSNTSLASFFGIFDSHLE---------VSSVNTSSNYDTAYALLSDALQRLYSATD 208
Query: 335 VTFLSVLPAC-AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVF 393
+L + A + + N + N+ A+ +
Sbjct: 209 EGYLVANDLLTKSTDMYH--SLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266
Query: 394 DGMGYKTLA------SWNAMISGLAMH--GKADKALSLFSRMIGEGLQPDDITFVGVLSA 445
+++ S+ + L + + + F + + L P+
Sbjct: 267 Q----ESINLHPTPNSYIFL--ALTLADKENSQEFFKFFQKAVD--LNPEYPP------T 312
Query: 446 CNHAG--LLDIGRQYFNAMIQDY----KISPKLQH-YGCMVDLLGRAGLFDEAEALL-KT 497
H G + Y NA +D+ ++P+ + Y + LL + G F E+EA +T
Sbjct: 313 YYHRGQMYFILQD-YKNA-KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNET 370
Query: 498 MEMKPDAAIWTSLLGACRVH-GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
P + G + LE +V + + A
Sbjct: 371 KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR 430
Query: 557 VATIRTRLNDKG 568
++ D+
Sbjct: 431 QSSQDPTQLDEE 442
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 24/165 (14%)
Query: 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLS----ACNHAGLLDIGRQYFNAMIQ-- 464
GK+ AL +++I L+ D F G LD F +++
Sbjct: 70 FLAMGKSKAALPDLTKVIQ--LKMD---FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 124
Query: 465 -----DYKISPKLQHYGCMVDLLGRA------GLFDEA-EALLKTMEMKPDAAIWTSLLG 512
+ + +L M L +A G + A L K +E+ A L
Sbjct: 125 PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 184
Query: 513 ACRVH-GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
C + G S K +L+ +N A+ +S +Y G +
Sbjct: 185 ECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 43/290 (14%), Positives = 80/290 (27%), Gaps = 54/290 (18%)
Query: 309 YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKW---IHAY-----I 360
+ K AL +++Q ++ + L GK +
Sbjct: 70 FLAMGKSKAALPDLTKVIQ--LKMDFTAARLQR-GHLLL---KQGKLDEAEDDFKKVLKS 123
Query: 361 DKNH----------QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS------- 403
+ + K + + S G+ AA D K L
Sbjct: 124 NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD----KILEVCVWDAEL 179
Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA-GLLDIGRQYFNAM 462
G+ KA+S L+ D+ +S + G ++
Sbjct: 180 RELRAECFIKEGEPRKAISDLKAASK--LKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237
Query: 463 IQ----------DYKISPKLQHYGCMVDLLGRAGLFDEA-EALLKTMEMKPD-AAIWTSL 510
++ YK KL + L R G + +A M+ +P A
Sbjct: 238 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRS 297
Query: 511 ---LGACRVH-GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
+ C + V +L++EP+N A + Y +D+
Sbjct: 298 KERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDE 347
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 4e-06
Identities = 31/274 (11%), Positives = 62/274 (22%), Gaps = 32/274 (11%)
Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357
V++ GG + L + Q + P V ++ G L
Sbjct: 191 QVVAIASNNGGKQALETVQRLLPVLCQAHG--LTPAQVVAIASHD----GGKQALETMQR 244
Query: 358 AYIDKNHQ---KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA-------SWNAM 407
+ V S I ++ V + + +
Sbjct: 245 LLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLC----QAHGLTPDQVVAIASH 300
Query: 408 ISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI---Q 464
G + L + + G L PD + + +H G + Q
Sbjct: 301 GGGKQALETVQRLLPVLCQAHG--LTPDQVV-----AIASHDGGKQALETVQRLLPVLCQ 353
Query: 465 DYKISPKL-QHYGCMVDLLGRAGLFDEA-EALLKTMEMKPDAAIWTSLLGACRVHGRLEL 522
+ ++P L + + PD + + G + ++
Sbjct: 354 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQR 413
Query: 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
V L P+ A
Sbjct: 414 LLPVLCQAHGLTPDQVVAIASHDGGKQALETVQR 447
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 8e-06
Identities = 33/281 (11%), Positives = 60/281 (21%), Gaps = 46/281 (16%)
Query: 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL--DLGKW 355
V++ GG + L + Q + P+ V A A L
Sbjct: 225 QVVAIASHDGGKQALETMQRLLPVLCQAHG--LPPDQVV------AIASNIGGKQALETV 276
Query: 356 IHAYIDKNHQ---KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA-------SWN 405
+ V S ++ V + +
Sbjct: 277 QRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLC----QAHGLTPDQVVAIA 332
Query: 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465
+ G + L + + G L PD + A G + ++
Sbjct: 333 SHDGGKQALETVQRLLPVLCQAHG--LTPDQVV------AIASNGGGKQALETVQRLLPV 384
Query: 466 Y----KISPK----LQHYGCMVDLLGRAGLFDEA-EALLKTMEMKPD-AAIWTSLLGACR 515
++P + G L L + + PD S G +
Sbjct: 385 LCQAHGLTPDQVVAIASNGGKQAL----ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQ 440
Query: 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
++ V L P A
Sbjct: 441 ALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQ 481
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 39/282 (13%), Positives = 65/282 (23%), Gaps = 50/282 (17%)
Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVS-- 371
+ EAL+ + LS PA A+ I A + H+ + V
Sbjct: 76 QHHEALV------GHGFTHAHIVALSQHPAALGTVAVTYQHIITALPEATHEDIVGVGKQ 129
Query: 372 -----------------------LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLAS----- 403
L T + AK G + A E V T A
Sbjct: 130 WSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTP 189
Query: 404 -----WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA-GLLDIGRQ 457
+ G + L + + G L P + + A +
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHG--LTPAQVVAIASHDGGKQALETMQRLLP 247
Query: 458 YFNAMIQDYKISPKL-QHYGCMVDLLGRAGLFDEAEALL-KTMEMKPD-AAIWTSLLGAC 514
Q + + P + +L + + PD S G
Sbjct: 248 VLC---QAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGK 304
Query: 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
+ ++ V L P+ A
Sbjct: 305 QALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQR 346
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 24/199 (12%), Positives = 46/199 (23%), Gaps = 18/199 (9%)
Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFD-GMGYKT--LASWNAMISGLAMHGKADKALSLF 424
V S ++ V G + + + G + L +
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVL 249
Query: 425 SRMIGEGLQPDDITFVGVLSACNHA-GLLDIGRQYFNAMIQDYKISPK----LQHYGCMV 479
+ G L PD + + A + Q + ++P + +G
Sbjct: 250 CQAHG--LPPDQVVAIASNIGGKQALETVQRLLPVLC---QAHGLTPDQVVAIASHGGGK 304
Query: 480 DLLGRAGLFDEA-EALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
L L + + PD S G + ++ V L P+
Sbjct: 305 QALET---VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 361
Query: 538 PGAYVLLSNMYAGAGRWDD 556
A
Sbjct: 362 VVAIASNGGGKQALETVQR 380
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 5e-04
Identities = 40/411 (9%), Positives = 97/411 (23%), Gaps = 36/411 (8%)
Query: 164 DPFVHTSLINMYAQNGELESARLVFNKS---SLRDAVSYTALITGYASRGYLDDARQLFD 220
S ++ V ++ + V+ + G + + +
Sbjct: 327 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 386
Query: 221 EMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDM-YS 279
+ P++ + + +++ + L + HGL + V A D
Sbjct: 387 ----QAHGLTPDQVVAIASNGGKQALETVQ--RLLPVLCQAHGLTPDQVVAIASHDGGKQ 440
Query: 280 KCGDLVKARDLFE---SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336
+ + + + V++ GG ++ L + Q V
Sbjct: 441 ALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLT-PDQVVA 499
Query: 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD-G 395
S + L + + + + + V S ++ V
Sbjct: 500 IASNIGGKQALATVQ--RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 557
Query: 396 MGYKT--LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG--L 451
G + + + G + L + + G L + A
Sbjct: 558 HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTQVQV------VAIASNIGGK 609
Query: 452 LDIGRQYFNAM---IQDYKISPKL-QHYGCMVDLLGRAGLFDEAEALL-KTMEMKPD-AA 505
+ + Q + ++P +L + + PD
Sbjct: 610 QALET-VQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV 668
Query: 506 IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
S G + ++ V L E A +
Sbjct: 669 AIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQR 719
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Query: 480 DLLGRAGLFDEAEALL-KTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
D G E + + + + P L R + + + PE+
Sbjct: 31 DAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90
Query: 538 PGAYVLLSNMYAGAGRWDD 556
PG + L + AG+ +
Sbjct: 91 PGIALWLGHALEDAGQAEA 109
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 15/74 (20%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
Query: 485 AGLFDEAEALL-KTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542
L + +P W L A G GE + L L P +P A
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 543 LLSNMYAGAGRWDD 556
L + R +
Sbjct: 62 RLGRVRWTQQRHAE 75
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 27/173 (15%), Positives = 46/173 (26%), Gaps = 19/173 (10%)
Query: 413 MHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG--LLDIGRQYFNAMIQDY---- 466
M + L + +P D A L +G A
Sbjct: 1 MTADGPRELLQLRAAVR--HRPQD------FVAWLMLADAELGMGD--TTAGEMAVQRGL 50
Query: 467 KISPKL-QHYGCMVDLLGRAGLFDEAEALLKT-MEMKPD-AAIWTSLLGACRVHGRLELG 523
+ P + + + EA LL+ + P+ I L A G+ E
Sbjct: 51 ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAA 110
Query: 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCS 576
+ +L PE P L N W + + ++ + V
Sbjct: 111 AAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 4e-05
Identities = 29/212 (13%), Positives = 60/212 (28%), Gaps = 49/212 (23%)
Query: 314 DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLW 373
+A+ FRQ + + + Y + + + + L
Sbjct: 19 QNGQAVSYFRQTIA--LNIDR--------TEMYY-----------WTNVDKNSEISSKLA 57
Query: 374 TSLIDMYAKCGNIKAAEQVFDGMGYKTLA-------SWNAMISGLAMHGKADKALSLFSR 426
T L Y K N A + + L A G+ AL ++ +
Sbjct: 58 TELALAYKKNRNYDKAYLFYK----ELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEK 113
Query: 427 MIGEGLQPDDITFVGVLSACNHAGLLDIGR-QYFNAMIQDY----KISPKLQ--HYGCMV 479
++ L+ D++ +A G + ++ K+Q Y
Sbjct: 114 IL--QLEADNL------AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR-DG 164
Query: 480 DLLGRAGLFDEA-EALLKTMEMKPDAAIWTSL 510
+++A +L K + P +L
Sbjct: 165 LSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 23/146 (15%)
Query: 415 GKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH 474
G+ +A+S F + I L D Y+ + ++ +IS KL
Sbjct: 18 GQNGQAVSYFRQTIA--LNIDRTEM-----------------YYWTNVDKNSEISSKL-- 56
Query: 475 YGCMVDLLGRAGLFDEAEALL-KTMEMKPDAAIWTSLLG-ACRVHGRLELGESVAKHLLE 532
+ + +D+A + ++ P+ G+ + + + +L+
Sbjct: 57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116
Query: 533 LEPENPGAYVLLSNMYAGAGRWDDVA 558
LE +N A + L N Y +
Sbjct: 117 LEADNLAANIFLGNYYYLTAEQEKKK 142
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 6e-05
Identities = 35/283 (12%), Positives = 76/283 (26%), Gaps = 35/283 (12%)
Query: 272 NALIDMYSKCGDLVKARDLFE---SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328
L M + + + L E Y + +A+ L ++ L+
Sbjct: 217 LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE- 275
Query: 329 NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKA 388
PN+ + C Y + + +KL L + K
Sbjct: 276 -YIPNNAYLHCQI-GCCYRAKVFQVMNLRENGMYGKRKLLE--LIGHAVAHLKKADEAN- 330
Query: 389 AEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448
+ + S A+ + ++A F + + L P + +
Sbjct: 331 ---------DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL----HLRY 377
Query: 449 AGLLDIGRQYFNAMIQDY----KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP-D 503
+ + I + KI+ K + M D L + + D
Sbjct: 378 GNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKI--------AKMRLSKNGAD 429
Query: 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN 546
+ L ++ +++ + ++ LE P A
Sbjct: 430 SEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 9e-05
Identities = 20/181 (11%), Positives = 47/181 (25%), Gaps = 12/181 (6%)
Query: 368 NNVSLWTSLIDMYAKCGNIKAAEQVFDGM----GYKTLASWNAMISGLAMHGKADKALSL 423
N+ L+ + D + +++ + + + +
Sbjct: 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156
Query: 424 FSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG 483
F + + + L + + + F ++ Y P+ +D L
Sbjct: 157 FKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY--VLAYIDYLS 214
Query: 484 RAGLFDEAEALLKTM----EMKPDAA--IWTSLLGACRVHGRLELGESVAKHLLELEPEN 537
+ L + + + P+ + IW L G L V K E
Sbjct: 215 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274
Query: 538 P 538
Sbjct: 275 Y 275
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 7e-04
Identities = 17/171 (9%), Positives = 44/171 (25%), Gaps = 15/171 (8%)
Query: 270 VTNALIDMYSKCGDLVKARDLFESIEKRD----VISWNVMIGGYTHTSDYKEALMLFRQM 325
+ A D K ++ + + + + + K M+F++
Sbjct: 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160
Query: 326 LQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKL-NNVSLWTSLIDMYAKCG 384
+ + V + L + I + +K + + ID +
Sbjct: 161 REDARTRHHVYVTAALMEYYCSKDKSVAFKI---FELGLKKYGDIPEYVLAYIDYLSHLN 217
Query: 385 NIKAAEQVFDGMGYKTLAS-------WNAMISGLAMHGKADKALSLFSRMI 428
+F+ + W ++ + G L + R
Sbjct: 218 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 2/70 (2%)
Query: 489 DEA-EALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSN 546
E L + D + +L H + + + L+ +P A+ L
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 547 MYAGAGRWDD 556
G G
Sbjct: 62 TLQGQGDRAG 71
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 53/419 (12%), Positives = 112/419 (26%), Gaps = 49/419 (11%)
Query: 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMP 223
V + G+ A + SL + A I R A E
Sbjct: 72 YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFND-ASIEPMLERNLNKQAMSKLKEK- 129
Query: 224 IREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGD 283
+ + T ++ A E V S+ G+ + +
Sbjct: 130 FGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKE 189
Query: 284 LVKARDLFESIEKRDVISWNVMIGGYTH-TSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342
L+ ++ KR S++ +T ++E L + + ++ L
Sbjct: 190 LMNG---LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK--LKEKLAISLEHT- 243
Query: 343 ACAYLGALDLGKWIHA--YIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKT 400
+ A I K + V+ + + + A + FD K
Sbjct: 244 GIFKF---LKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFD----KA 296
Query: 401 LA-------SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLD 453
L + + D+A F + L P++I L
Sbjct: 297 LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE--LDPENIF------PYIQLACLA 348
Query: 454 IGRQYFNAMIQDY----KISPKL-QHYGCMVDLLGRAGLFDEA-EALLKTMEMKPDAAIW 507
F+ + + P+ + ++L FD+A + +E++
Sbjct: 349 YRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408
Query: 508 TSLLGACRVH----------GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556
+ ++ + +L+P + A + L+ M D+
Sbjct: 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 707 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.73 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.67 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.57 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.57 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.53 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.52 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.52 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.52 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.51 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.51 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.51 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.5 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.49 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.48 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.48 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.48 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.47 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.47 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.46 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.45 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.43 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.41 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.4 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.39 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.38 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.38 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.37 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.35 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.33 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.32 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.3 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.29 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.28 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.26 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.25 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.22 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.22 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.18 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.16 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.13 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.1 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.09 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.08 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.06 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.06 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.05 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.03 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.0 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.0 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.99 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.94 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.92 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.9 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.9 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.89 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.88 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.88 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.86 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.86 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.85 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.84 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.84 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.83 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.83 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.76 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.75 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.75 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.75 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.73 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.73 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.72 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.71 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.71 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.71 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.67 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.66 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.65 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.64 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.64 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.62 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.62 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.61 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.58 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.57 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.57 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.57 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.57 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.56 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.56 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.56 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.54 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.52 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.52 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.5 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.49 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.48 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.48 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.46 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.46 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.44 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.43 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.43 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.43 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.43 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.42 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.41 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.41 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.4 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.4 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.38 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.38 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.38 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.35 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.34 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.34 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.34 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.34 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.32 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.31 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.3 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.3 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.28 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.27 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.25 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.23 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.2 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.19 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.19 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.18 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.16 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.15 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.15 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.14 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.14 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.11 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.1 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.08 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.08 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.08 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.06 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.05 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.05 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.04 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.03 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.01 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.99 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.94 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.94 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.92 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.91 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.91 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.85 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.74 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.67 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.66 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.63 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.62 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.57 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.47 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.46 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.37 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.35 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.33 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.3 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.26 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.23 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.17 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.11 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.11 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.1 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.96 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.87 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.71 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.61 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.57 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.34 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.3 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.22 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.97 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.86 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.83 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.59 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.47 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.32 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.78 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.94 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.61 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.57 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.21 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.97 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.88 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.49 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.94 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.9 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 88.81 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.58 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 88.4 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 87.81 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 87.56 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 87.27 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.89 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.81 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.31 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.24 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.99 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 83.48 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 83.26 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 83.14 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 83.13 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 82.41 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-44 Score=397.32 Aligned_cols=484 Identities=11% Similarity=0.016 Sum_probs=403.8
Q ss_pred hcccCCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHH
Q 043060 72 CAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQ 151 (707)
Q Consensus 72 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 151 (707)
..+.++|.+..+...|+.++.+++..|+.++..+.+.|++++|+.+|++|.. ..||..++..++.+|.+.|++++|..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 4567788999999999999999999999999999999999999999999985 46788999999999999999999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCC-------------------CeehHHHHHHHHHhCCCh
Q 043060 152 IHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-------------------DAVSYTALITGYASRGYL 212 (707)
Q Consensus 152 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~~ 212 (707)
+++.+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988644 688999999999999999999999999965443 378999999999999999
Q ss_pred hHHHHHHHhCccccCCCCCCH-hhHHHHHHHHhccCCchH--HHHH-HHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHH
Q 043060 213 DDARQLFDEMPIREENFVPNE-STVVTVLSACAHMGSLEL--GNWV-CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKAR 288 (707)
Q Consensus 213 ~~A~~l~~~m~~~~~~~~p~~-~t~~~ll~~~~~~g~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 288 (707)
++|+++|++|.. ..|+. ..+..+...+...+..+. +..+ +..+...+......+++.++.+|.+.|++++|.
T Consensus 217 ~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 217 DRAKECYKEALM----VDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp HHHHHHHHHHHH----HCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 999999999963 33543 334444433332222111 1111 444454555556677888899999999999999
Q ss_pred HHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCC
Q 043060 289 DLFESIEK--RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366 (707)
Q Consensus 289 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (707)
++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|+.++|..++..+.+..+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 371 (597)
T 2xpi_A 293 DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371 (597)
T ss_dssp HHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc
Confidence 99999987 799999999999999999999999999999865 337788999999999999999999999999987665
Q ss_pred CCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 043060 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVL 443 (707)
Q Consensus 367 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 443 (707)
+..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++
T Consensus 372 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 448 (597)
T 2xpi_A 372 --KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLG 448 (597)
T ss_dssp --SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHH
T ss_pred --cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 88999999999999999999999999873 4578899999999999999999999999999842 34667999999
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHH
Q 043060 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-------EMKPD--AAIWTSLLGAC 514 (707)
Q Consensus 444 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~ 514 (707)
.+|.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999874 3457889999999999999999999999987 45787 78999999999
Q ss_pred HhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 515 RVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.+.|++++|.+.++++++.+|+++.+|..++.+|.+.|++++|.++++++.+...
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999987544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=360.20 Aligned_cols=480 Identities=10% Similarity=0.023 Sum_probs=410.2
Q ss_pred CCchhhhhhhchhhcccCCCChHHHHHHHhcCC--CCCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHH
Q 043060 59 HNTQFALSKLIEICAVSPFGDLSYALLVFETIR--EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFI 136 (707)
Q Consensus 59 ~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 136 (707)
.+++..++.++ ..|.+.|++++|..+|+++. .||..+|+.++.+|.+.|++++|+.+|+++... +++..+++.+
T Consensus 81 ~~~~~~~~~~~--~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWR--HDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 36788899999 99999999999999999986 378899999999999999999999999998653 6788999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHh---------------CCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCC---Ceeh
Q 043060 137 LKSCAKISAISEGKQIHAHVLKL---------------GLESDPFVHTSLINMYAQNGELESARLVFNKSSLR---DAVS 198 (707)
Q Consensus 137 l~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~ 198 (707)
+.++.+.|++++|.++|+++... |.+.+..+++.++.+|.+.|++++|.++|+++... +...
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 99999999999999999853211 22335789999999999999999999999988643 4455
Q ss_pred HHHHHHHHHhCCChhHHHHH---HHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHH
Q 043060 199 YTALITGYASRGYLDDARQL---FDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALI 275 (707)
Q Consensus 199 ~~~li~~~~~~g~~~~A~~l---~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 275 (707)
|..+...+...+..+.+... +..+.. .+..++..+|..++..|.+.|++++|.++++.+.+. +++..+++.++
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSK--EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHG--GGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCccccc--chHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 66565555444333222211 333321 344455566777788899999999999999998876 58899999999
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchH
Q 043060 276 DMYSKCGDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDL 352 (707)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 352 (707)
.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..++..+...+.+.|++++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999863 477899999999999999999999999998653 4567889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043060 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIG 429 (707)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (707)
|.++++.+.+..+. +..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+
T Consensus 392 A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQ--FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999987765 78899999999999999999999999873 45788999999999999999999999999998
Q ss_pred CCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-
Q 043060 430 EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDY---KISPK--LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP- 502 (707)
Q Consensus 430 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p- 502 (707)
.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...|
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 42 3356799999999999999999999999997643 55777 789999999999999999999999997 4445
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhh
Q 043060 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550 (707)
Q Consensus 503 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 550 (707)
+..+|..++.+|...|++++|.+.++++++++|+++.++..|+++|..
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999999998864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-26 Score=240.13 Aligned_cols=371 Identities=14% Similarity=0.160 Sum_probs=281.5
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCC---CCCeehHHHHHHHHHhCCCh
Q 043060 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS---LRDAVSYTALITGYASRGYL 212 (707)
Q Consensus 136 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 212 (707)
+...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++... ..+..+|..+...|.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3455677888999999888888774 4445667777778888888888888887543 33667788888888888888
Q ss_pred hHHHHHHHhCccccCCCCCC-HhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHH
Q 043060 213 DDARQLFDEMPIREENFVPN-ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLF 291 (707)
Q Consensus 213 ~~A~~l~~~m~~~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 291 (707)
++|++.|+++.. ..|+ ..++..+..++...|++++|...+..+.+.. +.+..++..+...|...|++++|.+.|
T Consensus 84 ~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 84 QEAIEHYRHALR----LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 888888888742 3344 3457777777777788888887777777663 334455666666677777777777776
Q ss_pred HhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCC
Q 043060 292 ESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN 368 (707)
Q Consensus 292 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 368 (707)
+++.+ .+..+|+.+...|.+.|++++|+..|+++.+. ++.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----------------------------------~p~-- 201 (388)
T 1w3b_A 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----------------------------------DPN-- 201 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----------------------------------CTT--
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------------------------------CCC--
Confidence 66542 24456666666666666666666666666553 222
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcC---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGM---GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLS 444 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 444 (707)
+...+..+...+...|++++|...|++. ...+..+|..+...|...|++++|++.|+++.+ ..|+ ..++..+..
T Consensus 202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 279 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLAN 279 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHH
Confidence 4555666777777777777777777654 234567788888888888889999999998888 4555 457888888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 043060 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 445 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 522 (707)
++.+.|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...|+ ..+|..++..+.+.|++++
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 357 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 899999999999999988873 4567788999999999999999999999986 55665 7889999999999999999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHhhhcCC
Q 043060 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 523 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 553 (707)
|...+++++++.|+++.+|..++.++...|+
T Consensus 358 A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 358 ALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999999999887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-25 Score=234.02 Aligned_cols=353 Identities=16% Similarity=0.161 Sum_probs=301.8
Q ss_pred HHHHHhCCChhHHHHHHHhCccccCCCCCC-HhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc
Q 043060 203 ITGYASRGYLDDARQLFDEMPIREENFVPN-ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC 281 (707)
Q Consensus 203 i~~~~~~g~~~~A~~l~~~m~~~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 281 (707)
...+.+.|++++|++.+.++.. ..|+ ...+..+...+...|+++.|...+....+.. +.+..++..+...|.+.
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWR----QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 4556778888888888888742 3444 3445556666778888999988888888764 55778899999999999
Q ss_pred CCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh-hHHhHHHHHhccCCchHHHHHH
Q 043060 282 GDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDV-TFLSVLPACAYLGALDLGKWIH 357 (707)
Q Consensus 282 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~ 357 (707)
|++++|...|+++.+ .+..+|..+..++.+.|++++|++.|+++.+. .|+.. .+..+...+...|++++|...+
T Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999998753 35567999999999999999999999999875 35444 4556667788889999999999
Q ss_pred HHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 043060 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434 (707)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 434 (707)
..+.+..+. +..++..+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|++... ..|
T Consensus 159 ~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p 234 (388)
T 1w3b_A 159 LKAIETQPN--FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSP 234 (388)
T ss_dssp HHHHHHCTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCT
T ss_pred HHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCc
Confidence 999988766 78899999999999999999999999874 44677899999999999999999999999998 567
Q ss_pred C-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 043060 435 D-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLL 511 (707)
Q Consensus 435 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 511 (707)
+ ..++..+..++...|++++|...|+.+.+ ..+.+...|..++.+|.+.|++++|.+.++++ ...| +..+|..+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 5 45888999999999999999999999986 33346788999999999999999999999997 3344 588999999
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
..+...|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+..
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999998743
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=244.47 Aligned_cols=183 Identities=15% Similarity=0.159 Sum_probs=154.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCC---------chHHHHHHHHHHHhCCCCCcH
Q 043060 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA---------LDLGKWIHAYIDKNHQKLNNV 370 (707)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 370 (707)
..++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|+..+. ++.|.++|+.|.+.|..| |.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-NE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-CH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-CH
Confidence 35677788888888888888888888888888888888888888876654 467888888888888876 88
Q ss_pred HHHhHHhhHHHhcCCHHHHHHHHhcCC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 043060 371 SLWTSLIDMYAKCGNIKAAEQVFDGMG----YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446 (707)
Q Consensus 371 ~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 446 (707)
.+|++||.+|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++|+.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 888888888888888888888888874 4688889999999999999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH
Q 043060 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 484 (707)
++.|++++|.++|++|.+. +..|+..||+.+++.|..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 9999999999999998765 888999999988888765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=247.95 Aligned_cols=211 Identities=11% Similarity=0.108 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHCCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcC
Q 043060 113 VAIKFYVRMILSGFVPNTY-TFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKS 191 (707)
Q Consensus 113 ~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~ 191 (707)
.+..+.+++.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+..+++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 4555667777776655443 57888999999999999999999999999999999999999998887754322
Q ss_pred CCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHH
Q 043060 192 SLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 271 (707)
Q Consensus 192 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 271 (707)
.+.+..++|.++|++|.. .|+.||..||+++|.+|++.|+++.|.++++.|.+.|+.||..+|
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~--~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 143 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIV--DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence 234557889999999954 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhcc
Q 043060 272 NALIDMYSKCGDLVKARDLFESIE----KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347 (707)
Q Consensus 272 ~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 347 (707)
++||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..++..
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999996 4799999999999999999999999999999999999999999999988754
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-23 Score=225.09 Aligned_cols=437 Identities=12% Similarity=0.005 Sum_probs=263.2
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 043060 97 IWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYA 176 (707)
Q Consensus 97 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 176 (707)
.|......+.+.|++++|+..|+++.+.. ||..++..+..++...|++++|.+.++.+++.. +.+..++..+...|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45666777888888888888888888764 677888888888888888888888888888775 445677888888888
Q ss_pred hCCChhHHHHHHhcCCC---CCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHH
Q 043060 177 QNGELESARLVFNKSSL---RDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGN 253 (707)
Q Consensus 177 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 253 (707)
+.|++++|...|+++.. .+......++..+........+.+.+..+.. .+..|+...+..-..............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDT--ATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------CCCCHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhccCChhhHHHhhccCCchhH
Confidence 88888888888876542 2333444444444433333333333322210 111111111111100000111111111
Q ss_pred HHHHHHHHcCC---------CchhHHHHHHHHHHHh---cCCHHHHHHHHHhcCC----------------C-ChhhHHH
Q 043060 254 WVCSLIEGHGL---------GSNLHVTNALIDMYSK---CGDLVKARDLFESIEK----------------R-DVISWNV 304 (707)
Q Consensus 254 ~~~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~ 304 (707)
.+...+..... +.+...+..+...+.. .|++++|...|+++.+ + +..+|..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 11111111100 2234444444444443 6777777777776544 1 2446677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcC
Q 043060 305 MIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384 (707)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 384 (707)
+...+...|++++|+..|+++.+.. |+...+..+...+...|+++.|...+..+.+..+. +..++..+...|...|
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN--NSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT--CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC--CHHHHHHHHHHHHHhC
Confidence 7777778888888888888777654 33556666667777777777777777777766554 5556677777777777
Q ss_pred CHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHH
Q 043060 385 NIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFN 460 (707)
Q Consensus 385 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~ 460 (707)
++++|...|+++. ..+...|..+...|...|++++|+..|+++.+ ..| +..++..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777776542 33556677777777777777777777777766 333 33466666667777777777777777
Q ss_pred HhHHhcCCCCC----hHHHHHHHHHHHH---cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043060 461 AMIQDYKISPK----LQHYGCMVDLLGR---AGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLL 531 (707)
Q Consensus 461 ~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 531 (707)
.+.+...-.++ ...+..+...|.+ .|++++|.+.++++ ...|+ ..+|..+...+...|++++|...+++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 66553222222 3366666777777 77777777777664 33343 5666677777777777777777777777
Q ss_pred ccCCCCchhHHHH
Q 043060 532 ELEPENPGAYVLL 544 (707)
Q Consensus 532 ~~~p~~~~~~~~l 544 (707)
+++|+++..+..+
T Consensus 477 ~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 477 DLARTMEEKLQAI 489 (514)
T ss_dssp HHCSSHHHHHHHH
T ss_pred HhccccHHHHHHH
Confidence 7777666555544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-22 Score=211.48 Aligned_cols=335 Identities=13% Similarity=0.038 Sum_probs=229.7
Q ss_pred CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHH
Q 043060 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274 (707)
Q Consensus 195 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 274 (707)
+...|..+...+.+.|++++|+.+|+++.. ..+.+..++..+..++...|++++|...+..+++.+ +.+..++..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVD---GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 344555556666666666666666665532 112234444555555555555555555555555443 2234444444
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCC---h---hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccC
Q 043060 275 IDMYSKCGDLVKARDLFESIEKRD---V---ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348 (707)
Q Consensus 275 i~~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 348 (707)
..+|.+.|++++|...|+++.+.+ . ..|..++..+... .+......+...|
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcC
Confidence 555555555555555554443321 1 3333332221100 0111123355667
Q ss_pred CchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 043060 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFS 425 (707)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 425 (707)
+++.|...+..+.+..+. +..++..++.+|.+.|++++|.+.|+++. ..+..+|..++..|...|++++|+..|+
T Consensus 158 ~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCVW--DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777777776654 67788888888999999999988888764 3577889999999999999999999999
Q ss_pred HHHHCCCCCCHhH-HHHH------------HHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHHcCC
Q 043060 426 RMIGEGLQPDDIT-FVGV------------LSACNHAGLLDIGRQYFNAMIQDYKISPK-----LQHYGCMVDLLGRAGL 487 (707)
Q Consensus 426 ~m~~~g~~p~~~t-~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~ 487 (707)
++.+ ..|+... +..+ ...|.+.|++++|...|+.+.+. .|+ ..+|..++.+|.+.|+
T Consensus 236 ~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 236 ECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCC
Confidence 9987 5666553 3333 78899999999999999999874 343 4578899999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHH------------HHhhhcC-
Q 043060 488 FDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLS------------NMYAGAG- 552 (707)
Q Consensus 488 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g- 552 (707)
+++|++.++++ ...| +..+|..++.+|...|++++|...++++++++|+++.++..++ +.|...|
T Consensus 311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 99999999986 5556 4899999999999999999999999999999999999999998 5576667
Q ss_pred ----ChhhHHHHHHH
Q 043060 553 ----RWDDVATIRTR 563 (707)
Q Consensus 553 ----~~~~a~~~~~~ 563 (707)
+.+++.+.+++
T Consensus 391 ~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRK 405 (450)
T ss_dssp STTCCTTHHHHHHHH
T ss_pred CccCCHHHHHHHHHH
Confidence 45566666665
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-22 Score=220.05 Aligned_cols=427 Identities=10% Similarity=0.001 Sum_probs=319.5
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCC---CCCeehHHHHHHHHH
Q 043060 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS---LRDAVSYTALITGYA 207 (707)
Q Consensus 131 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~ 207 (707)
..+......+.+.|++++|...++.+++.. |+..++..+...|.+.|++++|...|+++. ..+..+|..+...|.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 345566677889999999999999999986 689999999999999999999999998764 346778999999999
Q ss_pred hCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHH---HHHHHHhcCCH
Q 043060 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNA---LIDMYSKCGDL 284 (707)
Q Consensus 208 ~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~---li~~~~~~g~~ 284 (707)
+.|++++|+..|+++.. .+ +++......++..+........+.+.+..+...+..|+...... ...........
T Consensus 85 ~~g~~~~A~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSL--NG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HTTCHHHHHHHHHHHHH--SS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHhhHHHHHHHHHHHHh--cC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 99999999999999864 22 23444444444444333322233222222221111111111000 00111111122
Q ss_pred HHHHHHHHhcCC---------C-ChhhHHHHHHHHHh---cCCHHHHHHHHHHHhh-----cCCCC--------ChhhHH
Q 043060 285 VKARDLFESIEK---------R-DVISWNVMIGGYTH---TSDYKEALMLFRQMLQ-----SNIEP--------NDVTFL 338 (707)
Q Consensus 285 ~~A~~~~~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~ 338 (707)
..+...+..... + +...|......+.. .|++++|+..|+++.+ ....| +..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 222222222221 1 24445555555554 8999999999999987 31122 345667
Q ss_pred hHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcC
Q 043060 339 SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHG 415 (707)
Q Consensus 339 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 415 (707)
.+...+...|+++.|...+..+.+..+. ..++..+...|...|++++|.+.|+++. ..+...|..+...|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR---VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC
Confidence 7778889999999999999999998754 7788999999999999999999999864 346778999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 043060 416 KADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494 (707)
Q Consensus 416 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 494 (707)
++++|+..|+++.+. .|+ ..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.
T Consensus 319 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 319 NYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp CTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999984 454 458888999999999999999999999874 334667889999999999999999999
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHh---cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHH
Q 043060 495 LKTM----EMKPD----AAIWTSLLGACRV---HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 495 ~~~~----~~~p~----~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 563 (707)
++++ +..|+ ..+|..+...+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.+++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9986 22222 4489999999999 99999999999999999999999999999999999999999999999
Q ss_pred HhhCCC
Q 043060 564 LNDKGM 569 (707)
Q Consensus 564 m~~~~~ 569 (707)
..+...
T Consensus 475 a~~~~~ 480 (514)
T 2gw1_A 475 SADLAR 480 (514)
T ss_dssp HHHHCS
T ss_pred HHHhcc
Confidence 987544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.5e-23 Score=224.07 Aligned_cols=432 Identities=12% Similarity=0.049 Sum_probs=280.0
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043060 95 QVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINM 174 (707)
Q Consensus 95 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 174 (707)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.++.+++.. +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567888889999999999999999999864 4467788899999999999999999999999886 5567889999999
Q ss_pred HHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCcccc----CCCCCCHhhHHHHHHHHhccCCch
Q 043060 175 YAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIRE----ENFVPNESTVVTVLSACAHMGSLE 250 (707)
Q Consensus 175 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----~~~~p~~~t~~~ll~~~~~~g~~~ 250 (707)
|...|++++|...|+.+ ..+....+..+..+...+...+|+..++++.... ....|+...+.. +....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChH
Confidence 99999999999999744 2333333444556666777788999999885421 122334333333 22233333
Q ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhc--------CCHHHHHHHHHhcCCCC----------hhhHHHHHHHHHhc
Q 043060 251 LGNWVCSLIEGHGLGSNLHVTNALIDMYSKC--------GDLVKARDLFESIEKRD----------VISWNVMIGGYTHT 312 (707)
Q Consensus 251 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~----------~~~~~~li~~~~~~ 312 (707)
.+...+...... -.........+...+... |++++|..+|+++.+.+ ..+|..+...+...
T Consensus 178 ~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNY-DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSS-CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcccc-ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence 222211111100 011112333333333322 46788888888776532 12466666777788
Q ss_pred CCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHH
Q 043060 313 SDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQV 392 (707)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 392 (707)
|++++|+..|+++.+. .|+...+..+...+...|+++.|...+..+.+..+. +..++..+...|...|++++|.+.
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE--YPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888888888888775 355666777777777888888888888888777665 666777777777777888877777
Q ss_pred HhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 043060 393 FDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI 468 (707)
Q Consensus 393 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 468 (707)
|+++. ..+...|..+...|...|++++|+..|+++.+ ..|+ ...+..+...+...|++++|...|+.+.+....
T Consensus 333 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 77652 33556777777777777777777777777776 3344 336666777777777777777777776553211
Q ss_pred CC----ChHHHHHHHHHHHHc----------CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 469 SP----KLQHYGCMVDLLGRA----------GLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 469 ~p----~~~~~~~li~~~~~~----------g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
.+ ....+..+...|.+. |++++|...++++ ...|+ ..+|..+...+...|++++|...++++++
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 112233444556666 7777777777665 33343 56667777777777777777777777777
Q ss_pred cCCCCchh
Q 043060 533 LEPENPGA 540 (707)
Q Consensus 533 ~~p~~~~~ 540 (707)
+.|.++..
T Consensus 491 ~~~~~~~~ 498 (537)
T 3fp2_A 491 LARTMDEK 498 (537)
T ss_dssp HC--CHHH
T ss_pred hCCCcHHH
Confidence 77665544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-21 Score=207.11 Aligned_cols=366 Identities=12% Similarity=0.025 Sum_probs=262.5
Q ss_pred CCChhHHHHHHHHHHhCCChhHHHHHHhcCC---CCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHH
Q 043060 162 ESDPFVHTSLINMYAQNGELESARLVFNKSS---LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVT 238 (707)
Q Consensus 162 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ 238 (707)
+.+...+..+...|.+.|++++|..+|+++. ..+..+|..+...|...|++++|+..|+++... -+.+...+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 99 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL---KMDFTAARLQ 99 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCcHHHHHH
Confidence 4567789999999999999999999999765 347889999999999999999999999999642 1235678889
Q ss_pred HHHHHhccCCchHHHHHHHHHHHcCCCchh---HHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 043060 239 VLSACAHMGSLELGNWVCSLIEGHGLGSNL---HVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDY 315 (707)
Q Consensus 239 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 315 (707)
+...+...|++++|...+..+.+.. +.+. ..+..++..+...+ +..+...+.+.|++
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-------------------~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQR-------------------LRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHcCCH
Confidence 9999999999999999999999864 3344 66666655532211 22233445556666
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhc
Q 043060 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395 (707)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 395 (707)
++|+..|+++.+.. +.+...+..+...+...|+++.|...+..+.+..+. +..++..++.+|.+.|++++|...|++
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND--NTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666665532 224455555666666666666666666666665444 566677777777777777777777766
Q ss_pred CC---CCChHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----hHHHHHHHHHhccCCHHHH
Q 043060 396 MG---YKTLASWNAM------------ISGLAMHGKADKALSLFSRMIGEGLQPDD-----ITFVGVLSACNHAGLLDIG 455 (707)
Q Consensus 396 ~~---~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a 455 (707)
+. ..+...|..+ +..+...|++++|+..|+++.+ ..|+. ..+..+..++.+.|++++|
T Consensus 237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 52 2234444444 7888899999999999999988 56663 3677788889999999999
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC---
Q 043060 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGA------------CRVHG--- 518 (707)
Q Consensus 456 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~------------~~~~g--- 518 (707)
...++.+.+. .+.+...|..+..+|...|++++|.+.++++ ...|+ ..++..+..+ |...|
T Consensus 315 ~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~ 392 (450)
T 2y4t_A 315 IRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392 (450)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence 9999988763 3346788889999999999999999999986 66676 6666666633 33334
Q ss_pred --ChhHHHHHHHH-HHccCCCCch----------hHHHHHHHhhhcCChhhH
Q 043060 519 --RLELGESVAKH-LLELEPENPG----------AYVLLSNMYAGAGRWDDV 557 (707)
Q Consensus 519 --~~~~A~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~a 557 (707)
+.+++.+.+++ +++..|++.. .+..+..+|...|+.++.
T Consensus 393 ~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 393 NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp TCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 56778888886 6777775321 444555566555555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-21 Score=209.88 Aligned_cols=422 Identities=11% Similarity=0.047 Sum_probs=324.9
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCC---CCCeehHHHHHHHHH
Q 043060 131 YTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS---LRDAVSYTALITGYA 207 (707)
Q Consensus 131 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~ 207 (707)
..+..+...+.+.|++++|...++.+++.. +.++.++..+...|.+.|++++|.+.|+++. ..+..+|..+...+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 456677788889999999999999999886 5678899999999999999999999999764 347788999999999
Q ss_pred hCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcC--CCchhHHHHHHHHHHHhcCCHH
Q 043060 208 SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHG--LGSNLHVTNALIDMYSKCGDLV 285 (707)
Q Consensus 208 ~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~ 285 (707)
..|++++|++.|+.+. ..|+... ..+..+...+....+...+..+.+.. ..+........+..|....+.+
T Consensus 105 ~~g~~~~A~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLS-----LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHTCHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HcCCHHHHHHHHHHHh-----cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999997542 2222211 11223334444566777777775531 0111112234455566778888
Q ss_pred HHHHHHHhcCCCChh---hHHHHHHHHHhc--------CCHHHHHHHHHHHhhcCCCCCh--------hhHHhHHHHHhc
Q 043060 286 KARDLFESIEKRDVI---SWNVMIGGYTHT--------SDYKEALMLFRQMLQSNIEPND--------VTFLSVLPACAY 346 (707)
Q Consensus 286 ~A~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~~~~~ 346 (707)
.+...+......+.. .+..+...+... |++++|+.+|+++.+.. |+. .++..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHh
Confidence 888877776655443 344444333332 47899999999998753 442 245566677888
Q ss_pred cCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHH
Q 043060 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSL 423 (707)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 423 (707)
.|+++.|...+..+.+..+ +..++..+...|...|++++|.+.|+++. ..+..+|..+...|...|++++|+..
T Consensus 256 ~~~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHP---TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCC---CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCC---CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999999765 46788899999999999999999999763 45778999999999999999999999
Q ss_pred HHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC----
Q 043060 424 FSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM---- 498 (707)
Q Consensus 424 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---- 498 (707)
|+++.+ ..|+ ..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++
T Consensus 333 ~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 333 FQKAQS--LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHH--HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999998 4554 458888999999999999999999999874 3446778899999999999999999999986
Q ss_pred CCCC----CHHHHHHHHHHHHhc----------CChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 499 EMKP----DAAIWTSLLGACRVH----------GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 499 ~~~p----~~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
+..+ ....+..+...+... |++++|...++++++.+|+++.++..++.+|.+.|++++|.+.+++.
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1111 233355566777777 99999999999999999999999999999999999999999999999
Q ss_pred hhCCC
Q 043060 565 NDKGM 569 (707)
Q Consensus 565 ~~~~~ 569 (707)
.+...
T Consensus 489 l~~~~ 493 (537)
T 3fp2_A 489 AILAR 493 (537)
T ss_dssp HHHC-
T ss_pred HHhCC
Confidence 87554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-18 Score=176.65 Aligned_cols=305 Identities=11% Similarity=0.036 Sum_probs=209.2
Q ss_pred HhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHH
Q 043060 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK---RDVISWNVMIGGY 309 (707)
Q Consensus 233 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 309 (707)
...+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4456666777777888888888888777764 34566777777788888888888888777653 3556777777778
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCC---Ch-hhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCC
Q 043060 310 THTSDYKEALMLFRQMLQSNIEP---ND-VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN 385 (707)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~p---~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 385 (707)
...|++++|+..|+++.+. .| +. ..+..+.... ....+..+...+...|+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~------------------------~~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD------------------------EMQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH------------------------HHHHHHHHHHHHHHccC
Confidence 8888888888888877764 34 22 1221111000 11112333566667777
Q ss_pred HHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHH
Q 043060 386 IKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNA 461 (707)
Q Consensus 386 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 461 (707)
+++|.+.|+++. ..+...|..+...+...|++++|+..++++.+. .| +..++..+...+...|++++|...|+.
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777776652 345566777777777777777777777777763 33 344666677777777777777777777
Q ss_pred hHHhcCCCCChHHHH------------HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChhHH
Q 043060 462 MIQDYKISPKLQHYG------------CMVDLLGRAGLFDEAEALLKTM-EMKPD-A----AIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 462 ~~~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~A 523 (707)
+.+.. +.+...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|
T Consensus 214 a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 214 CLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 66531 12222222 2366688889999999988886 33444 2 2355677888889999999
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 524 ESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 524 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
...++++++.+|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999899999999999999999999999999888643
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-18 Score=176.90 Aligned_cols=324 Identities=11% Similarity=-0.012 Sum_probs=244.2
Q ss_pred CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHH
Q 043060 195 DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNAL 274 (707)
Q Consensus 195 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 274 (707)
|+..|..+...+...|++++|+..|+++... .+.+..++..+...+...|+++.|...+..+.+.. +.+..++..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHH
Confidence 3456888899999999999999999999632 22356788889999999999999999999999874 4467889999
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccC
Q 043060 275 IDMYSKCGDLVKARDLFESIEKRDV------ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348 (707)
Q Consensus 275 i~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 348 (707)
..+|.+.|++++|...|++..+.++ ..+..+...+. ...+......+...|
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 9999999999999999999875433 23333321100 001122233444555
Q ss_pred CchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 043060 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFS 425 (707)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 425 (707)
+++.|...+..+.+..+. +..++..+...|...|++++|...|+++. ..+...|..+...|...|++++|+..|+
T Consensus 135 ~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCVW--DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555555555443 56677778888888888888888887653 3466788888888888888888888888
Q ss_pred HHHHCCCCCCHhH-HH------------HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHHHHcCCH
Q 043060 426 RMIGEGLQPDDIT-FV------------GVLSACNHAGLLDIGRQYFNAMIQDYKISPKL----QHYGCMVDLLGRAGLF 488 (707)
Q Consensus 426 ~m~~~g~~p~~~t-~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~ 488 (707)
+..+ ..|+... +. .+...+...|++++|...++.+.+... .+. ..+..+...|.+.|++
T Consensus 213 ~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 213 ECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP--SVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--SSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHccCH
Confidence 8887 4455432 22 235668889999999999999887422 222 2355678899999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhc
Q 043060 489 DEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551 (707)
Q Consensus 489 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 551 (707)
++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++.++..+..++...
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999986 4456 4889999999999999999999999999999999999888887776543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-18 Score=172.58 Aligned_cols=286 Identities=13% Similarity=0.111 Sum_probs=216.6
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHH
Q 043060 265 GSNLHVTNALIDMYSKCGDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341 (707)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 341 (707)
+.+..++..++..+...|++++|.++|+++.+ .+...+..++..+...|++++|+..++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 44556666777777777777777777777653 244566667777777788888888888777643 22455666666
Q ss_pred HHHhccC-CchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCH
Q 043060 342 PACAYLG-ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKA 417 (707)
Q Consensus 342 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 417 (707)
..+...| +++.|...+..+.+..+. +...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT--YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT--CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 6777777 777788877777776655 56678888888888888888888888763 33556777788888889999
Q ss_pred HHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-------CCCChHHHHHHHHHHHHcCCHH
Q 043060 418 DKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYK-------ISPKLQHYGCMVDLLGRAGLFD 489 (707)
Q Consensus 418 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~ 489 (707)
++|++.|++..+ ..|+ ...+..+...+...|++++|...++.+.+... .+.....+..+..+|.+.|+++
T Consensus 176 ~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999998887 4444 45778888888889999999998888876421 1334578888999999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh-hhcCChh
Q 043060 490 EAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY-AGAGRWD 555 (707)
Q Consensus 490 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 555 (707)
+|.+.+++. ...|+ ..+|..+...+...|++++|...++++++++|+++.++..++.++ ...|+.+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999886 33444 788889999999999999999999999999999999999999888 4555543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-16 Score=174.66 Aligned_cols=394 Identities=12% Similarity=0.100 Sum_probs=249.5
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHhcCCCC---CeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHH
Q 043060 164 DPFVHTSLINMYAQNGELESARLVFNKSSLR---DAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVL 240 (707)
Q Consensus 164 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll 240 (707)
+...|..++. +.+.|++++|+.+|+++... +...|..++..+.+.|++++|.++|++.+. ..|+...|...+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~----~~p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM----KVLHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----TCCCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCChHHHHHHH
Confidence 3444444444 24445555555555544321 334455555555555555555555555531 224433333333
Q ss_pred HHH-hccCCchHHHH----HHHHHHHc-CCCc-hhHHHHHHHHHHHh---------cCCHHHHHHHHHhcCC-CC---hh
Q 043060 241 SAC-AHMGSLELGNW----VCSLIEGH-GLGS-NLHVTNALIDMYSK---------CGDLVKARDLFESIEK-RD---VI 300 (707)
Q Consensus 241 ~~~-~~~g~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~-~~---~~ 300 (707)
... ...|+.+.|.+ +++..++. |..| +..+|..++....+ .|+++.|..+|++..+ |+ ..
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 211 22344444333 44433332 3222 34455555554433 4566666666666543 11 11
Q ss_pred hHHHHHHHH-------------HhcCCHHHHHHHHHHH------hhcC---CCCCh--------hhHHhHHHHHhcc---
Q 043060 301 SWNVMIGGY-------------THTSDYKEALMLFRQM------LQSN---IEPND--------VTFLSVLPACAYL--- 347 (707)
Q Consensus 301 ~~~~li~~~-------------~~~g~~~~A~~~~~~m------~~~g---~~p~~--------~t~~~ll~~~~~~--- 347 (707)
.|....... .+.+++++|..++.++ .+.. +.|+. ..|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 222211100 1245567777776652 2221 23431 2333333222211
Q ss_pred -CCc----hHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHh-------cCCHH-------HHHHHHhcCCC----CChHHH
Q 043060 348 -GAL----DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK-------CGNIK-------AAEQVFDGMGY----KTLASW 404 (707)
Q Consensus 348 -~~~----~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~----~~~~~~ 404 (707)
++. +.+..+++.++...+. +..+|..++..+.+ .|+++ +|..+|++... .+...|
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p~--~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 222 3667788888888765 78889999988876 69977 89999998753 367799
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-
Q 043060 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDD--ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL- 481 (707)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~- 481 (707)
..++..+.+.|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|..+|+...+. .+.+...|...+.+
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHH
Confidence 9999999999999999999999999 67764 37888888888999999999999999763 22233334333322
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch----hHHHHHHHhhhcCChh
Q 043060 482 LGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG----AYVLLSNMYAGAGRWD 555 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~ 555 (707)
+...|+.++|.++|++. ...|+ ...|..++..+...|+.+.|..+++++++..|.++. .|...+......|+.+
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred HHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 34689999999999985 44464 889999999999999999999999999998776655 7878888888899999
Q ss_pred hHHHHHHHHhhCC
Q 043060 556 DVATIRTRLNDKG 568 (707)
Q Consensus 556 ~a~~~~~~m~~~~ 568 (707)
.+..+.+++.+.-
T Consensus 481 ~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 481 SILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 9999999987654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-17 Score=165.83 Aligned_cols=265 Identities=11% Similarity=0.091 Sum_probs=231.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHH
Q 043060 297 RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL 376 (707)
Q Consensus 297 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 376 (707)
.+...+..++..+...|++++|+++|+++.+.. +.+...+..+...+...|+++.|...+..+.+..+. +..++..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS--NPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--STHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--CHHHHHHH
Confidence 466678888899999999999999999998764 234456666778889999999999999999998776 77889999
Q ss_pred hhHHHhcC-CHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCC
Q 043060 377 IDMYAKCG-NIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGL 451 (707)
Q Consensus 377 i~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 451 (707)
...|...| ++++|.+.|+++. ..+...|..+...+...|++++|+..|+++.+ ..|+ ...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ--LMKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999864 34677899999999999999999999999998 4454 4577778899999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCh
Q 043060 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EM----------KPDAAIWTSLLGACRVHGRL 520 (707)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~ll~~~~~~g~~ 520 (707)
+++|...++.+.+ ..+.+...+..+...|.+.|++++|.+.++++ .. ..+..+|..+...+...|++
T Consensus 175 ~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999976 33456788999999999999999999999886 11 22367999999999999999
Q ss_pred hHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 521 ELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 521 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
++|...++++++..|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999877643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-16 Score=167.95 Aligned_cols=365 Identities=10% Similarity=0.007 Sum_probs=255.7
Q ss_pred ChhHHHHHHHHHHh----CCChhHHHHHHhcCCC-CCeehHHHHHHHHHh----CCChhHHHHHHHhCccccCCCCCCHh
Q 043060 164 DPFVHTSLINMYAQ----NGELESARLVFNKSSL-RDAVSYTALITGYAS----RGYLDDARQLFDEMPIREENFVPNES 234 (707)
Q Consensus 164 ~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~p~~~ 234 (707)
++..+..|...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|++.|++... .+ +..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~~---~~~ 112 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL--KG---LPQ 112 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TT---CHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--CC---CHH
Confidence 34444445555554 5555555555554332 244455555555555 5666666666666532 22 334
Q ss_pred hHHHHHHHHhc----cCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhhHHHH
Q 043060 235 TVVTVLSACAH----MGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK----CGDLVKARDLFESIEK-RDVISWNVM 305 (707)
Q Consensus 235 t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l 305 (707)
.+..+...+.. .+++++|...+....+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L 189 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL 189 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44445555544 556666776666666654 45556666666766 6677777777776543 356677777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhc----cCCchHHHHHHHHHHHhCCCCCcHHHHhHHh
Q 043060 306 IGGYTH----TSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY----LGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377 (707)
Q Consensus 306 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 377 (707)
...|.. .+++++|+++|++..+.| +...+..+...+.. .++.+.|...+....+.+ +...+..|.
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg 262 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG----NSIAQFRLG 262 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT----CHHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHH
Confidence 777776 777888888887777654 34445555555543 667778888877777654 555677777
Q ss_pred hHHHh----cCCHHHHHHHHhcCCC-CChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 043060 378 DMYAK----CGNIKAAEQVFDGMGY-KTLASWNAMISGLAMH-----GKADKALSLFSRMIGEGLQPDDITFVGVLSACN 447 (707)
Q Consensus 378 ~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 447 (707)
.+|.. .++.++|.+.|++... .+...+..+...|... +++++|+..|++..+.| +...+..+...+.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF 339 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 78877 8899999999988754 4677888888888887 89999999999998864 4456666777776
Q ss_pred ccC---CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 043060 448 HAG---LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR----AGLFDEAEALLKTMEMKPDAAIWTSLLGACRV---- 516 (707)
Q Consensus 448 ~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~---- 516 (707)
..| +.++|.++|+...+. .+...+..|..+|.. .+++++|.+.|++.-...+...+..|...|..
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred hCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCC
Confidence 656 889999999998774 467788889999998 89999999999986323467888899999988
Q ss_pred cCChhHHHHHHHHHHccCCC---CchhHHHHHHHhhh
Q 043060 517 HGRLELGESVAKHLLELEPE---NPGAYVLLSNMYAG 550 (707)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 550 (707)
.++.++|...++++.+.+|+ ++.+...|+.++..
T Consensus 416 ~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 89999999999999999854 77777777776654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-17 Score=172.97 Aligned_cols=279 Identities=13% Similarity=0.034 Sum_probs=213.5
Q ss_pred HhcCCHHHHHH-HHHhcCC---C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCc
Q 043060 279 SKCGDLVKARD-LFESIEK---R----DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGAL 350 (707)
Q Consensus 279 ~~~g~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 350 (707)
.-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34467777777 7765442 1 24557777778888888888888888887753 23555667777777788888
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHH---------------HHHHHH
Q 043060 351 DLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNA---------------MISGLA 412 (707)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~---------------li~~~~ 412 (707)
+.|...+..+.+..+. +..++..+...|...|++++|.+.|+++.. .+...+.. .+..+.
T Consensus 115 ~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 115 LLAISALRRCLELKPD--NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 8888888888777655 677788888888888888888888876532 12222221 133334
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 043060 413 MHGKADKALSLFSRMIGEGLQPD---DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489 (707)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 489 (707)
..|++++|+..|+++.+ ..|+ ..++..+...+...|++++|...|+.+.+. .+.+...|..+...|.+.|+++
T Consensus 193 ~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hcccHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHH
Confidence 88999999999999998 4555 668889999999999999999999999873 3446788999999999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-----------chhHHHHHHHhhhcCChhh
Q 043060 490 EAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN-----------PGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 490 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~ 556 (707)
+|.+.++++ ...|+ ..+|..+...+...|++++|...+++++++.|++ ..+|..++.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999999986 44555 8899999999999999999999999999998877 7899999999999999999
Q ss_pred HHHHHHHH
Q 043060 557 VATIRTRL 564 (707)
Q Consensus 557 a~~~~~~m 564 (707)
|..++++.
T Consensus 349 A~~~~~~~ 356 (368)
T 1fch_A 349 YGAADARD 356 (368)
T ss_dssp HHHHHTTC
T ss_pred HHHhHHHH
Confidence 99987643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.79 E-value=9e-15 Score=164.76 Aligned_cols=382 Identities=13% Similarity=0.115 Sum_probs=296.5
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHH
Q 043060 129 NTYTFPFILKSCAKISAISEGKQIHAHVLKLG--LESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGY 206 (707)
Q Consensus 129 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 206 (707)
|+.-.....+++...|.+.++.++++.++-.+ +..+....+.|+.+..+. +......+.++...-+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 33445667788889999999999999988432 123456677777777776 5566666666554223 45577888
Q ss_pred HhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHH
Q 043060 207 ASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVK 286 (707)
Q Consensus 207 ~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 286 (707)
...|.+++|..+|++... .....+.++. ..+++++|.++...+ .+..+|..+..++.+.|++++
T Consensus 1060 i~lglyEEAf~IYkKa~~-------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV-------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC-------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 899999999999998621 1122233322 667889888888765 357899999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCC
Q 043060 287 ARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQK 366 (707)
Q Consensus 287 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (707)
|...|.+. .|...|..++..+.+.|++++|++.|....+.. ++....+.+..+|++.++++....+. + +
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-~-- 1192 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-G-- 1192 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-C--
Confidence 99999774 678888999999999999999999999887754 33333335888899998887544332 1 1
Q ss_pred CCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 043060 367 LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSAC 446 (707)
Q Consensus 367 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 446 (707)
++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|++.+++. -+..+|..+..+|
T Consensus 1193 -~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1193 -PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 1260 (1630)
T ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHH
Confidence 15556677999999999999999999985 48999999999999999999999977 3457899999999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh--cCChhH
Q 043060 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRV--HGRLEL 522 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~--~g~~~~ 522 (707)
...|++..|......+ ..+...+..++..|.+.|.+++|+.+++.. +.+|. ...|.-|...+.+ -++..+
T Consensus 1261 ve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred hhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHH
Confidence 9999999998876543 346677789999999999999999999875 55554 5677666666665 457777
Q ss_pred HHHHHHHHHccCC-----CCchhHHHHHHHhhhcCChhhHHH
Q 043060 523 GESVAKHLLELEP-----ENPGAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 523 A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 559 (707)
+.+.|..-..+.| .+...|..+.-.|.+.|+|+.|..
T Consensus 1335 hlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1335 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 8888887777666 677889999999999999999984
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=8.1e-18 Score=170.60 Aligned_cols=344 Identities=13% Similarity=0.094 Sum_probs=156.0
Q ss_pred hCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHH
Q 043060 177 QNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVC 256 (707)
Q Consensus 177 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 256 (707)
+.|++++|.+.++++..+ .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 678899999999999655 48999999999999999999999654 47778999999999999999999988
Q ss_pred HHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhh
Q 043060 257 SLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVT 336 (707)
Q Consensus 257 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 336 (707)
....+. .+++.+.+.|+.+|.++|+++++.++++. ++..+|+.+...|...|++++|...|.++ ..
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 877774 55678899999999999999998888853 67779999999999999999999999977 36
Q ss_pred HHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 043060 337 FLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGK 416 (707)
Q Consensus 337 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 416 (707)
|..+..++.+.|+++.|.+.+..+ . ++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~-~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------N-STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------T-CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------C-CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 888899999999999999888877 2 78889999999999999999977777654 444445568889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHh-HHHHHHHHH--hccCCHHHHHHHHHHhHHhcCCCC------ChHHHHHHHHHHHHcCC
Q 043060 417 ADKALSLFSRMIGEGLQPDDI-TFVGVLSAC--NHAGLLDIGRQYFNAMIQDYKISP------KLQHYGCMVDLLGRAGL 487 (707)
Q Consensus 417 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~ 487 (707)
+++|+.+++.... ..+... .|+.+..++ .+.+++.+..+.|..- -+++| +...|.-++-.|...++
T Consensus 223 ~eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e 297 (449)
T 1b89_A 223 FEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEE 297 (449)
T ss_dssp HHHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhch
Confidence 9999999998876 444433 444444444 4456666666666532 24444 35678889999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHH
Q 043060 488 FDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562 (707)
Q Consensus 488 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 562 (707)
++.|....-+-+ |+..--..+.....+..+.|.--+...-.++..| .....|..++...=+...+.++++
T Consensus 298 ~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~ 367 (449)
T 1b89_A 298 YDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFS 367 (449)
T ss_dssp HHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHH
Confidence 999888665542 2222222333344444554444333333333333 334444444444334444444433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-16 Score=160.23 Aligned_cols=281 Identities=14% Similarity=0.168 Sum_probs=111.8
Q ss_pred cCCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 043060 75 SPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHA 154 (707)
Q Consensus 75 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 154 (707)
-+.|++++|.+.++++++|+ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 47889999999999997775 8999999999999999999999653 588899999999999999999999888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHh
Q 043060 155 HVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNES 234 (707)
Q Consensus 155 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~ 234 (707)
..++. .+++.+.+.|+.+|.+.|+++++.++++. ++..+|+.+...|...|++++|..+|..+ .
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----------~ 149 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------S 149 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----------T
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----------h
Confidence 77774 45678899999999999999999988864 56779999999999999999999999987 2
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 043060 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSD 314 (707)
Q Consensus 235 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 314 (707)
.|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 4777777777777777777777665 256677777777777777777766555543 333334456666777777
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHh--cCCHHHHHHH
Q 043060 315 YKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK--CGNIKAAEQV 392 (707)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~--~g~~~~A~~~ 392 (707)
+++|+.+++...... +. ....|+-|.-+|++ -+++.+..+.
T Consensus 223 ~eEai~lLe~aL~le-~a------------------------------------h~~~ftel~il~~ky~p~k~~ehl~~ 265 (449)
T 1b89_A 223 FEELITMLEAALGLE-RA------------------------------------HMGMFTELAILYSKFKPQKMREHLEL 265 (449)
T ss_dssp HHHHHHHHHHHTTST-TC------------------------------------CHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc-HH------------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 777777776665432 11 34444555445544 3455555555
Q ss_pred HhcCCC--------CChHHHHHHHHHHHHcCCHHHHHHH
Q 043060 393 FDGMGY--------KTLASWNAMISGLAMHGKADKALSL 423 (707)
Q Consensus 393 ~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~ 423 (707)
|..-.. .+...|..++-.|.+.++++.|...
T Consensus 266 ~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 266 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 553221 1445788888999999999988763
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=5e-17 Score=161.62 Aligned_cols=267 Identities=13% Similarity=0.048 Sum_probs=189.9
Q ss_pred HhcCCHHHHHHHHHhcCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHH
Q 043060 279 SKCGDLVKARDLFESIEKRDV----ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGK 354 (707)
Q Consensus 279 ~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 354 (707)
...|+++.|+..++.....++ .....+..+|...|++++|+..++.. -.|+..++..+...+...++.+.+.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 344555555555555443321 12233445555555555555544321 2334444555555555555555555
Q ss_pred HHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 043060 355 WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434 (707)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 434 (707)
+.++.+...+..|.+..++..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|++.|+++.+ ..|
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~~p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD--QDE 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCc
Confidence 55555555443222667788888999999999999999998 56788999999999999999999999999998 457
Q ss_pred CHhHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 043060 435 DDITF---VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTS 509 (707)
Q Consensus 435 ~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ 509 (707)
+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|.+.+++. ...|+ ..+|..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 75422 12334445569999999999999884 4568889999999999999999999999995 55665 888999
Q ss_pred HHHHHHhcCChhH-HHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHH
Q 043060 510 LLGACRVHGRLEL-GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 510 ll~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 559 (707)
++..+...|+.++ +.+.++++++++|+++.+. +...+.+.++++..
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 9999999999876 5789999999999987644 44555555665544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-15 Score=164.20 Aligned_cols=405 Identities=12% Similarity=0.131 Sum_probs=282.8
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043060 94 NQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLIN 173 (707)
Q Consensus 94 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 173 (707)
|...|..++. +.+.|++++|..+|+++.+. .|-+...|...+..+.+.|+++.|+.+|+.+++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 6678998888 47789999999999999875 34456678888888889999999999999988763 67777777775
Q ss_pred HH-HhCCChhHHHH----HHhcCC------CCCeehHHHHHHHHHh---------CCChhHHHHHHHhCccccCCCCCCH
Q 043060 174 MY-AQNGELESARL----VFNKSS------LRDAVSYTALITGYAS---------RGYLDDARQLFDEMPIREENFVPNE 233 (707)
Q Consensus 174 ~~-~~~g~~~~A~~----~f~~~~------~~~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~~~~~~p~~ 233 (707)
.. ...|+.+.|++ +|++.. ..+...|...+....+ .|++++|..+|++.+. .|+.
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-----~P~~ 162 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-----NPMI 162 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-----SCCT
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-----chhh
Confidence 33 45677776654 665431 2356678887776654 6788888888888752 2332
Q ss_pred ---hhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHh-------cC------CC
Q 043060 234 ---STVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES-------IE------KR 297 (707)
Q Consensus 234 ---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~------~~ 297 (707)
..|..........+. .+...++. .+.++++.|..++.. +. .+
T Consensus 163 ~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred hHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 222221111000010 01111110 123445556555543 11 11
Q ss_pred C--------hhhHHHHHHHHHhc----CCH----HHHHHHHHHHhhcCCCCChhhHHhHHHHHhc-------cCCch---
Q 043060 298 D--------VISWNVMIGGYTHT----SDY----KEALMLFRQMLQSNIEPNDVTFLSVLPACAY-------LGALD--- 351 (707)
Q Consensus 298 ~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~--- 351 (707)
+ ...|...+.-.... ++. ++|+.+|++..... +-+...|......+.. .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 1 24566555433322 222 47788898888752 2345566666666554 68887
Q ss_pred ----HHHHHHHHHHH-hCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCh-HHHHHHHHHHHHcCCHHHHHH
Q 043060 352 ----LGKWIHAYIDK-NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTL-ASWNAMISGLAMHGKADKALS 422 (707)
Q Consensus 352 ----~a~~~~~~~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~-~~~~~li~~~~~~g~~~~A~~ 422 (707)
.|..+++..++ ..+. +..++..++..+.+.|++++|..+|+++. ..+. ..|..++..+.+.|+.++|.+
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~--~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKK--NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 88999999887 4443 78899999999999999999999999863 2343 589999999999999999999
Q ss_pred HHHHHHHCCCCCCH-hHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--
Q 043060 423 LFSRMIGEGLQPDD-ITFVGVLSA-CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-- 498 (707)
Q Consensus 423 ~~~~m~~~g~~p~~-~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-- 498 (707)
+|++..+. .|+. ..|...... +...|+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++.
T Consensus 378 ~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 378 IFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 99999984 4442 233332222 346899999999999988753 346788999999999999999999999986
Q ss_pred --CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 499 --EMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 499 --~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
+..|+ ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 454 ~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 454 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 23343 558999999999999999999999999998884
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-17 Score=170.19 Aligned_cols=259 Identities=10% Similarity=-0.017 Sum_probs=208.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHh
Q 043060 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377 (707)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 377 (707)
+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|+++.|...+..+.+..+. +..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN--NLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHH
Confidence 44557888888888888888888888887754 235667777888888888888888888888887665 677888899
Q ss_pred hHHHhcCCHHHHHHHHhcCCCCC-------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHhHHHH
Q 043060 378 DMYAKCGNIKAAEQVFDGMGYKT-------------LASWNAMISGLAMHGKADKALSLFSRMIGEGLQP---DDITFVG 441 (707)
Q Consensus 378 ~~y~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ 441 (707)
..|...|++++|.+.|+++...+ ...+..+...+...|++++|+..|+++.+ ..| +..++..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH--QNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH--HSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH--hCcCccCHHHHHH
Confidence 99999999999999988774321 22344567889999999999999999998 455 4668899
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 043060 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGR 519 (707)
Q Consensus 442 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~ 519 (707)
+...+...|++++|...|+.+.+. .+.+...|..+..+|.+.|++++|++.|+++ ...|+ ..+|..+...+...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 999999999999999999999873 3456789999999999999999999999986 45565 8899999999999999
Q ss_pred hhHHHHHHHHHHccCCC------------CchhHHHHHHHhhhcCChhhHHHHHHH
Q 043060 520 LELGESVAKHLLELEPE------------NPGAYVLLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 520 ~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 563 (707)
+++|...+++++++.|+ +..+|..|+.++...|+.+.+.++.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999998876 367899999999999999998877654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-16 Score=164.50 Aligned_cols=299 Identities=11% Similarity=0.028 Sum_probs=191.4
Q ss_pred HhCCChhHHHH-HHHhCccccCCC-CCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCH
Q 043060 207 ASRGYLDDARQ-LFDEMPIREENF-VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284 (707)
Q Consensus 207 ~~~g~~~~A~~-l~~~m~~~~~~~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 284 (707)
...|++++|++ .|++........ ..+...+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34577888887 777664211111 1134557777778888888888888888888764 45677888888889999999
Q ss_pred HHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHH
Q 043060 285 VKARDLFESIE---KRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYID 361 (707)
Q Consensus 285 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 361 (707)
++|...|+++. ..+..+|..+...|...|++++|++.|+++.... |+........... .
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~------~---------- 176 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG------A---------- 176 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH------h----------
Confidence 99999888765 3467788889999999999999999999988753 3322211110000 0
Q ss_pred HhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-
Q 043060 362 KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YK--TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD- 435 (707)
Q Consensus 362 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 435 (707)
+... ....+..+...+ ..|++++|...|+++. .. +..+|..+...|...|++++|+..|+++.+ ..|+
T Consensus 177 --~~~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~ 250 (368)
T 1fch_A 177 --GGAG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPND 250 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred --hhhc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCC
Confidence 0000 001112222233 6677777777776652 22 456777777777777777777777777776 3444
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC------------
Q 043060 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP------------ 502 (707)
Q Consensus 436 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p------------ 502 (707)
..++..+...+...|++++|...|+.+.+. .+.+...+..+..+|.+.|++++|.+.++++ ...|
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 446777777777778888888877777653 2335667777778888888888888877765 1111
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 503 DAAIWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 503 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
...+|..+..++...|+.++|..++++.++
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 157888888888888888888887775554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.8e-15 Score=157.31 Aligned_cols=352 Identities=12% Similarity=-0.000 Sum_probs=295.8
Q ss_pred CCeehHHHHHHHHHh----CCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhc----cCCchHHHHHHHHHHHcCCC
Q 043060 194 RDAVSYTALITGYAS----RGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAH----MGSLELGNWVCSLIEGHGLG 265 (707)
Q Consensus 194 ~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~ 265 (707)
.+..++..+...|.. .+++++|+..|++... .+ +...+..+-..+.. .++.++|...+....+.|
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~--~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE--QG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH--CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 366777778888888 8999999999999853 32 55677777777877 899999999999999876
Q ss_pred chhHHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChhh
Q 043060 266 SNLHVTNALIDMYSK----CGDLVKARDLFESIEKR-DVISWNVMIGGYTH----TSDYKEALMLFRQMLQSNIEPNDVT 336 (707)
Q Consensus 266 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 336 (707)
+...+..|..+|.. .+++++|...|++..+. +..++..+...|.. .+++++|++.|++..+.| +...
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 66778889999988 88999999999987654 67788888888887 889999999999998875 5566
Q ss_pred HHhHHHHHhc----cCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHh----cCCHHHHHHHHhcCC-CCChHHHHHH
Q 043060 337 FLSVLPACAY----LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK----CGNIKAAEQVFDGMG-YKTLASWNAM 407 (707)
Q Consensus 337 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~-~~~~~~~~~l 407 (707)
+..+...+.. .++.+.|...+....+.+ +...+..|..+|.. .++.++|.+.|++.. ..+...+..+
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l 261 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRL 261 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6677777766 789999999999998875 56678889999986 899999999999874 4567788888
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc-----CCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 043060 408 ISGLAM----HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHA-----GLLDIGRQYFNAMIQDYKISPKLQHYGCM 478 (707)
Q Consensus 408 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 478 (707)
...|.. .++.++|+..|++..+.| +...+..+...+... +++++|..+|+...+. .+...+..|
T Consensus 262 g~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~l 334 (490)
T 2xm6_A 262 GYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANL 334 (490)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHH
Confidence 888888 899999999999998754 455666777777776 8999999999998774 355677888
Q ss_pred HHHHHHcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhh-
Q 043060 479 VDLLGRAG---LFDEAEALLKTMEMKPDAAIWTSLLGACRV----HGRLELGESVAKHLLELEPENPGAYVLLSNMYAG- 550 (707)
Q Consensus 479 i~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~- 550 (707)
..+|.+.| ++++|++.|++.-...+...+..|...+.. .+++++|...++++.+.+ ++.++..|+.+|..
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYG 412 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcC
Confidence 88888877 789999999987323578899999999998 899999999999998865 57899999999998
Q ss_pred ---cCChhhHHHHHHHHhhCCC
Q 043060 551 ---AGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 551 ---~g~~~~a~~~~~~m~~~~~ 569 (707)
.++.++|...+++..+.+.
T Consensus 413 ~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998774
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-15 Score=161.22 Aligned_cols=369 Identities=12% Similarity=0.002 Sum_probs=202.2
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHhcCC------------CCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCC
Q 043060 165 PFVHTSLINMYAQNGELESARLVFNKSS------------LRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPN 232 (707)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~~f~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~ 232 (707)
...||.|...|...|+.++|++.|++.. ....++|+.+...|...|++++|...+++.........
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~-- 128 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS-- 128 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc--
Confidence 4456777777777777777766664321 11334555555555556666666555555421000000
Q ss_pred HhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc--CCHHHHHHHHHhcCC---CChhhHHHHHH
Q 043060 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKC--GDLVKARDLFESIEK---RDVISWNVMIG 307 (707)
Q Consensus 233 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~---~~~~~~~~li~ 307 (707)
...-.....++..+..++.+. +++++|...|++..+ .++..+..+..
T Consensus 129 ----------------------------~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~ 180 (472)
T 4g1t_A 129 ----------------------------SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAI 180 (472)
T ss_dssp ----------------------------CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred ----------------------------cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 000001123333333333332 346666666665442 23334444333
Q ss_pred H---HHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHh----ccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHH
Q 043060 308 G---YTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA----YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY 380 (707)
Q Consensus 308 ~---~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 380 (707)
. +...++.++|++.|++..+.. +.+...+..+...+. ..++.+.|.+.+.......+. +..++..+...|
T Consensus 181 ~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~--~~~~~~~lg~~~ 257 (472)
T 4g1t_A 181 ASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG--VTDVLRSAAKFY 257 (472)
T ss_dssp HHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS--CHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHH
Confidence 3 234455666676666666542 112333333333332 234566677777776666555 566667777777
Q ss_pred HhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHH-------------------cCCHHHHHHHHHHHHHCCCCCCH-h
Q 043060 381 AKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAM-------------------HGKADKALSLFSRMIGEGLQPDD-I 437 (707)
Q Consensus 381 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p~~-~ 437 (707)
.+.|++++|...|++.. ..+..+|..+...|.. .+..++|+..|++..+ ..|+. .
T Consensus 258 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~ 335 (472)
T 4g1t_A 258 RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFR 335 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCC
T ss_pred HHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhh
Confidence 77777777777776652 2344555555554432 2346788888888887 45554 4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHH-HHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL--QHYGCMVDL-LGRAGLFDEAEALLKTM-EMKPDAAIWTSLLGA 513 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~ 513 (707)
++..+...+...|++++|...|++..+. ...+.. ..+..+... +...|+.++|+..|++. .+.|+...+..
T Consensus 336 ~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---- 410 (472)
T 4g1t_A 336 VCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---- 410 (472)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH----
T ss_pred hhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH----
Confidence 7888899999999999999999998763 222221 123333332 34679999999999885 66777543332
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCccCCcccEE
Q 043060 514 CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSI 578 (707)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 578 (707)
..+.+..++++.++.+|+++.+|..|+.+|...|++++|++.|++..+.+.......+|+
T Consensus 411 -----~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 411 -----MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp -----HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred -----HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 234566778888999999999999999999999999999999999998776544444554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.6e-17 Score=166.79 Aligned_cols=232 Identities=12% Similarity=0.029 Sum_probs=198.9
Q ss_pred ChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHH
Q 043060 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMIS 409 (707)
Q Consensus 333 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 409 (707)
+...+......+...|+++.|...++.+++..+. +..++..+..+|.+.|++++|.+.|+++. ..+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG--DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4455788888999999999999999999998876 78899999999999999999999999874 457889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHh-----------HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 043060 410 GLAMHGKADKALSLFSRMIGEGLQPDDI-----------TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478 (707)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 478 (707)
.|...|++++|+..|+++.+ ..|+.. .+..+...+...|++++|..+|+.+.+.....++...+..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999998 455433 22345778899999999999999998753332368899999
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhh
Q 043060 479 VDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 556 (707)
...|.+.|++++|++.++++ ...|+ ..+|..++..+...|++++|+..+++++++.|+++.++..++.+|.+.|++++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999986 44554 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCC
Q 043060 557 VATIRTRLNDKG 568 (707)
Q Consensus 557 a~~~~~~m~~~~ 568 (707)
|.+.++++.+..
T Consensus 300 A~~~~~~al~~~ 311 (365)
T 4eqf_A 300 AVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999998754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-13 Score=152.68 Aligned_cols=402 Identities=12% Similarity=0.105 Sum_probs=222.7
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHCCC--CCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 043060 98 WNNIIRGHSLSSSPVVAIKFYVRMILSGF--VPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMY 175 (707)
Q Consensus 98 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 175 (707)
-...+++|...|.+.+|+++|++....+- .-+...-+.++.+..+. +..++.++...+-+ .....+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHH
Confidence 34566777777777777777777763310 01122233344333333 44444444444321 1123355556
Q ss_pred HhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHH
Q 043060 176 AQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWV 255 (707)
Q Consensus 176 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 255 (707)
...|.+++|..+|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|...
T Consensus 1060 i~lglyEEAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aervn--------~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERCN--------EPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66677777777776653 11111222221 5566777777666551 245666666777777777777666
Q ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 043060 256 CSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK--RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPN 333 (707)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 333 (707)
|... .|...|..++..+.+.|++++|.+.|....+ ++....+.++.+|++.+++++ ++-|. . .|+
T Consensus 1128 YiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee-le~fI---~---~~n 1194 (1630)
T 1xi4_A 1128 YIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE-LEEFI---N---GPN 1194 (1630)
T ss_pred HHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH-HHHHH---h---CCC
Confidence 6442 3555666667777777777777777655432 222233346666666666664 33221 1 234
Q ss_pred hhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 043060 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAM 413 (707)
Q Consensus 334 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 413 (707)
...+..+...|...|+++.|..+|..+ ..|..++..|.+.|++++|.+.+++. .+..+|..+..+|..
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhh
Confidence 445555666666777777777776653 24666777777777777777777655 455667666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHH--cCCHHH
Q 043060 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGR--AGLFDE 490 (707)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~--~g~~~~ 490 (707)
.|++..|...... +..+...+..++..|.+.|.+++|..+++... ++.+ ....|+-|..+|.+ -+++.+
T Consensus 1263 ~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred hhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHHHHHH
Confidence 6666666665443 22233344466666667777777777776554 2222 33445555555544 345555
Q ss_pred HHHHHHh-CCCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHHc------------cCCCCchhHHHHHHHhhhc
Q 043060 491 AEALLKT-MEMKP------DAAIWTSLLGACRVHGRLELGESVAKHLLE------------LEPENPGAYVLLSNMYAGA 551 (707)
Q Consensus 491 A~~~~~~-~~~~p------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~ 551 (707)
+.++|.+ +.+.| +...|.-+...|.+.|+++.|....-+-.. ..+.|+..|...++.|...
T Consensus 1335 hlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~ 1414 (1630)
T 1xi4_A 1335 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 1414 (1630)
T ss_pred HHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhh
Confidence 5555544 33322 355666666677777777766632211111 1344666666666666655
Q ss_pred C
Q 043060 552 G 552 (707)
Q Consensus 552 g 552 (707)
+
T Consensus 1415 ~ 1415 (1630)
T 1xi4_A 1415 K 1415 (1630)
T ss_pred C
Confidence 5
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-16 Score=160.37 Aligned_cols=272 Identities=9% Similarity=-0.000 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHh
Q 043060 269 HVTNALIDMYSKCGDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345 (707)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 345 (707)
..+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3444555556666666666666655432 244455555555666666666666666555432 112333334444444
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHH-HH-HHHHcCCHHHHHHH
Q 043060 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAM-IS-GLAMHGKADKALSL 423 (707)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~~ 423 (707)
..|+++.|...+..+.+..+.. ...+..+.... ++......+ .. .+...|++++|+..
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQY--EQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTT--TTC--------------------------------------CCTTSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCcc--HHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 4444444444444444433321 11111110000 000000111 22 36677889999999
Q ss_pred HHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 043060 424 FSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMK 501 (707)
Q Consensus 424 ~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 501 (707)
++++.+. .| +..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...
T Consensus 161 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 161 LHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9998873 44 4568888888999999999999999998763 3346788899999999999999999999986 444
Q ss_pred CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC------------CchhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 502 PD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPE------------NPGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 502 p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
|+ ..+|..+...+...|++++|...++++++..|. ++.++..++.+|.+.|++++|..++++..
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 54 889999999999999999999999999999998 78899999999999999999999887543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-15 Score=151.72 Aligned_cols=248 Identities=12% Similarity=0.060 Sum_probs=202.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCh--hhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhc
Q 043060 306 IGGYTHTSDYKEALMLFRQMLQSNIEPND--VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383 (707)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 383 (707)
|.-....|++.+|+..+++.... .|+. .....+..++...|+++.|...++. ..+|+...+..+...|...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCC
Confidence 34456789999999999887553 3443 3445677899999999998875543 2344778889999999999
Q ss_pred CCHHHHHHHHhcCC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHH
Q 043060 384 GNIKAAEQVFDGMG-----YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458 (707)
Q Consensus 384 g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 458 (707)
|+.++|.+.++++. ..+...+..+...+.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999862 23667788888999999999999999987 45666888899999999999999999
Q ss_pred HHHhHHhcCCCCChHH---HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 043060 459 FNAMIQDYKISPKLQH---YGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLEL 533 (707)
Q Consensus 459 ~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 533 (707)
|+.+.+. .|+... ...++..+...|++++|..+|+++ ...| +...|+.+..++...|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999875 254321 123445555669999999999997 3344 5889999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHhhhcCChhh-HHHHHHHHhhCCC
Q 043060 534 EPENPGAYVLLSNMYAGAGRWDD-VATIRTRLNDKGM 569 (707)
Q Consensus 534 ~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~~ 569 (707)
+|+++.++..++.++...|++++ +.++++++.+..+
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999987 5789999887554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-14 Score=155.15 Aligned_cols=341 Identities=11% Similarity=-0.019 Sum_probs=184.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHhcCC-------CC----CeehHHHHHHHHHh--CCChhHHHHHHHhCccccCCCCCCH
Q 043060 167 VHTSLINMYAQNGELESARLVFNKSS-------LR----DAVSYTALITGYAS--RGYLDDARQLFDEMPIREENFVPNE 233 (707)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~~f~~~~-------~~----~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~~~~~~p~~ 233 (707)
+|+.+...|...|++++|...|++.. .+ ...++..+..++.. .+++++|++.|++.+. +.|+.
T Consensus 96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~----~~p~~ 171 (472)
T 4g1t_A 96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE----KKPKN 171 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH----HSTTC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH----hCCCC
Confidence 44444555555555555544443221 11 12334444444443 3457788888887743 33443
Q ss_pred h-hHHHHHHH---HhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHh----cCCHHHHHHHHHhcC---CCChhhH
Q 043060 234 S-TVVTVLSA---CAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK----CGDLVKARDLFESIE---KRDVISW 302 (707)
Q Consensus 234 ~-t~~~ll~~---~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~---~~~~~~~ 302 (707)
. .+..+..+ +...++.+.|.+.+...++.. +.+..++..+...+.. .|++++|.+.|++.. ..+..+|
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~ 250 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHH
Confidence 2 23333222 345567777777777777764 3345555555544444 456778888887754 3466788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-hhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHH
Q 043060 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIEPND-VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381 (707)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 381 (707)
..+...|...|++++|+..|++..+. .|+. .++..+...+...+ . ..... ..........
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~-----~----~~~~~--------~~~~~~~~~~ 311 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKV-----F----QVMNL--------RENGMYGKRK 311 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHH-----H----HHHHC--------------CHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHH-----H----HhhhH--------HHHHHHHHHH
Confidence 88999999999999999999998875 3443 33433333322110 0 00000 0011111122
Q ss_pred hcCCHHHHHHHHhcC---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh----HHHHHHH-HHhccCCHH
Q 043060 382 KCGNIKAAEQVFDGM---GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI----TFVGVLS-ACNHAGLLD 453 (707)
Q Consensus 382 ~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~-a~~~~g~~~ 453 (707)
..+..+.|...|++. ...+..+|..+...|...|++++|++.|++..+. .|+.. .+..+.. .....|+.+
T Consensus 312 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (472)
T 4g1t_A 312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK--ELTPVAKQLLHLRYGNFQLYQMKCED 389 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred HHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHCCCHH
Confidence 233466777777765 3345668889999999999999999999999984 44433 2222222 345789999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043060 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLL 531 (707)
Q Consensus 454 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 531 (707)
+|...|++..+ +.|+...... ....+.+++++. ...| +..+|..|+..+...|++++|++.|++++
T Consensus 390 ~Ai~~y~kal~---i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 390 KAIHHFIEGVK---INQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp HHHHHHHHHHH---SCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHh---cCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999998875 4455433222 223334444443 3345 47899999999999999999999999999
Q ss_pred ccCCCCchhHHHHH
Q 043060 532 ELEPENPGAYVLLS 545 (707)
Q Consensus 532 ~~~p~~~~~~~~l~ 545 (707)
+++|.+|.+...++
T Consensus 458 e~~~~~p~a~~~~G 471 (472)
T 4g1t_A 458 ESGSLIPSASSWNG 471 (472)
T ss_dssp --------------
T ss_pred hcCCCCCcHhhcCC
Confidence 99998887766554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-15 Score=151.63 Aligned_cols=274 Identities=12% Similarity=0.028 Sum_probs=192.3
Q ss_pred CHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHH
Q 043060 232 NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK---RDVISWNVMIGG 308 (707)
Q Consensus 232 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 308 (707)
+...+..+...+...|++++|..+++.+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 44567778888999999999999999999875 45778899999999999999999999998763 467789999999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCChh-hHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHH-hh-HHHhcCC
Q 043060 309 YTHTSDYKEALMLFRQMLQSNIEPNDV-TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSL-ID-MYAKCGN 385 (707)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~-~y~~~g~ 385 (707)
|...|++++|++.|+++.+.. |+.. .+..+...+ + +......+ .. .+...|+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~----------------------~-~~~~~~~~~~~~~~~~~~~ 153 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD----------------------V-DIDDLNVQSEDFFFAAPNE 153 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC-------------------------------------------CCTTSHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH----------------------H-HHHHHHHHHHhHHHHHccc
Confidence 999999999999999998753 3322 222221000 0 11111122 11 2556666
Q ss_pred HHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHH
Q 043060 386 IKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNA 461 (707)
Q Consensus 386 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 461 (707)
+++|.+.++++. ..+...|..+...|...|++++|+..++++.+ ..|+ ..++..+...+...|++++|...|+.
T Consensus 154 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777766552 33556677777777777777777777777776 3343 44677777777777788888877777
Q ss_pred hHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCChhHHHHHH
Q 043060 462 MIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-------------AAIWTSLLGACRVHGRLELGESVA 527 (707)
Q Consensus 462 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~g~~~~A~~~~ 527 (707)
+.+. .+.+...+..+...|.+.|++++|.+.++++ ...|+ ..+|..+..++...|+.++|...+
T Consensus 232 a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 232 ALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7653 2335667777778888888888888877765 22232 567888888888888888888887
Q ss_pred HHHHccCC
Q 043060 528 KHLLELEP 535 (707)
Q Consensus 528 ~~~~~~~p 535 (707)
+++++..|
T Consensus 310 ~~~l~~~~ 317 (327)
T 3cv0_A 310 AQNVEPFA 317 (327)
T ss_dssp TCCSHHHH
T ss_pred HHHHHhcc
Confidence 76665443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-14 Score=137.45 Aligned_cols=192 Identities=16% Similarity=0.044 Sum_probs=156.7
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLS 444 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 444 (707)
+...+..+...+.+.|++++|...|++.. ..+...|..+...+.+.|++++|+..|++..+ ..|+.. .+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 66778888999999999999999998763 34777899999999999999999999999998 567654 7888888
Q ss_pred HHhcc-----------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 043060 445 ACNHA-----------GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAAIWTSLLG 512 (707)
Q Consensus 445 a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 512 (707)
++... |++++|...|+...+. .+.+...+..+..+|...|++++|++.|++. ....+...|..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Confidence 88888 9999999999999863 3336788889999999999999999999986 22267899999999
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
.+...|++++|...++++++++|+++.++..++.++...|++++|.+.+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-16 Score=171.37 Aligned_cols=129 Identities=14% Similarity=0.180 Sum_probs=115.1
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG-------YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVG 441 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 441 (707)
...+||+||++|+++|++++|.++|++|. .+|+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45689999999999999999999997753 57999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCC-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043060 442 VLSACNHAGL-LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498 (707)
Q Consensus 442 ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 498 (707)
+|.++++.|+ .++|.++|++|.++ |+.||..+|++++....|.+-++...++...+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999997 58899999999886 99999999999998888776655555553333
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-14 Score=140.54 Aligned_cols=155 Identities=10% Similarity=0.022 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 481 (707)
..|..+...|...|++++|+..|+++.+ ..|+. ..+...|++++|...++.+.+ ..+.+...+..+...
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHH
Confidence 4555566666666666666666666666 34443 234445666677776666654 222244566666677
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHH
Q 043060 482 LGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 559 (707)
|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++.++..++.+|...|++++|.+
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 77777777777777665 3333 366677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhC
Q 043060 560 IRTRLNDK 567 (707)
Q Consensus 560 ~~~~m~~~ 567 (707)
.+++..+.
T Consensus 229 ~~~~a~~~ 236 (258)
T 3uq3_A 229 TLDAARTK 236 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776553
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-14 Score=139.23 Aligned_cols=236 Identities=11% Similarity=0.026 Sum_probs=202.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCC-c----HHHH
Q 043060 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-N----VSLW 373 (707)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~ 373 (707)
...|..+...+...|++++|+..|+++.+.. .+...+..+...+...|+++.|...+..+.+..+..+ + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4578889999999999999999999999887 7788899999999999999999999999988654320 1 6789
Q ss_pred hHHhhHHHhcCCHHHHHHHHhcCCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccC
Q 043060 374 TSLIDMYAKCGNIKAAEQVFDGMGY--KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAG 450 (707)
Q Consensus 374 ~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g 450 (707)
..+...|.+.|++++|.+.|+++.. ++ ...+...|++++|+..++++.. ..|+.. .+..+...+...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhc
Confidence 9999999999999999999998743 33 3456778899999999999998 556554 7888888999999
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 043060 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAK 528 (707)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~ 528 (707)
++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...|+ ..+|..+...+...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999874 3446788999999999999999999999986 44555 8899999999999999999999999
Q ss_pred HHHccC------CCCchhHHHHHHH
Q 043060 529 HLLELE------PENPGAYVLLSNM 547 (707)
Q Consensus 529 ~~~~~~------p~~~~~~~~l~~~ 547 (707)
+++++. |.+...+..+..+
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHhChhhcCCCchHHHHHHHHHh
Confidence 999998 8777777666554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-16 Score=173.65 Aligned_cols=151 Identities=14% Similarity=0.114 Sum_probs=128.8
Q ss_pred CCCchhhhhhhchhhcccCCCChHHHHHHHhcCC-------CCCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCc
Q 043060 58 LHNTQFALSKLIEICAVSPFGDLSYALLVFETIR-------EPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNT 130 (707)
Q Consensus 58 ~~~~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 130 (707)
...-..+||+|| +.|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 123 ~~~~~~TynaLI--dglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv 200 (1134)
T 3spa_A 123 LSGQQQRLLAFF--KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200 (1134)
T ss_dssp CCHHHHHHHHHH--HHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHhHHHHHHHHH--HHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence 334456899999 99999999999999997763 589999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhccCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCCC-----CeehHHHHHH
Q 043060 131 YTFPFILKSCAKISAI-SEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSLR-----DAVSYTALIT 204 (707)
Q Consensus 131 ~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~ 204 (707)
.||+++|.++++.|+. ++|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+.+.|..
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence 9999999999999985 789999999999999999999999999988887777777776655432 2333444555
Q ss_pred HHHhCC
Q 043060 205 GYASRG 210 (707)
Q Consensus 205 ~~~~~g 210 (707)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.4e-14 Score=138.66 Aligned_cols=241 Identities=12% Similarity=-0.056 Sum_probs=185.7
Q ss_pred hcCCHHHHHHHHHHHhhcCCC--C-ChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHH
Q 043060 311 HTSDYKEALMLFRQMLQSNIE--P-NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIK 387 (707)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 387 (707)
..|++++|+..|+++.+.... | +..++..+...+...|+++.|...+..+.+..+. +..++..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHccCHH
Confidence 346677777777777765321 1 3445666666777777777777777777777655 6778888999999999999
Q ss_pred HHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 388 AAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 388 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
+|.+.|+++. ..+...|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999998763 34678899999999999999999999999998 667776666666667788999999999988876
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 465 DYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-----AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
. .+++...+. ++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|++.
T Consensus 173 ~--~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 K--SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp H--SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred c--CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 4 334444443 777788888999999999886 33332 57889999999999999999999999999999775
Q ss_pred hhHHHHHHHhhhcCChhhHHHHH
Q 043060 539 GAYVLLSNMYAGAGRWDDVATIR 561 (707)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~a~~~~ 561 (707)
..+ +.++...|++++|.+.+
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHH---HHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHhhHHHH
Confidence 544 66788889999988765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-13 Score=133.61 Aligned_cols=245 Identities=13% Similarity=0.051 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh--hhHHhHHHH
Q 043060 269 HVTNALIDMYSKCGDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND--VTFLSVLPA 343 (707)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~ 343 (707)
.........+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+.+..|+. ..+..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3455566777777888888887777643 24557777777777788888888877777763211111 124444555
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHH
Q 043060 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKA 420 (707)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 420 (707)
+...|+++.|...+..+.+..+. +..++..+...|...|++++|.+.|++... .+...|..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT--RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555443 344455555555555555555555554432 1333444444122222344444
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC---HHHHHHHHHh
Q 043060 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL---FDEAEALLKT 497 (707)
Q Consensus 421 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~ 497 (707)
++.|+++.+ ..|+ +...+..+..++...|+ +++|...+++
T Consensus 162 ~~~~~~a~~--~~p~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 162 DSSFVKVLE--LKPN-----------------------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHHHHHH--HSTT-----------------------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHH--hCcc-----------------------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 444444444 2232 23444444555555554 4445555544
Q ss_pred C----CCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcC
Q 043060 498 M----EMKPD------AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552 (707)
Q Consensus 498 ~----~~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 552 (707)
. ...|+ ..+|..+...+...|++++|...++++++++|+++.+...+.......+
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 3 11122 2577788889999999999999999999999999888877776665544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-13 Score=144.23 Aligned_cols=374 Identities=9% Similarity=0.020 Sum_probs=216.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh---hHHHHHHhcCCCCCeehHHHHHHHHHhCC--
Q 043060 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGEL---ESARLVFNKSSLRDAVSYTALITGYASRG-- 210 (707)
Q Consensus 136 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 210 (707)
+...+.+.|++++|.++++...+.| ++..+..|..+|...|+. ++|...|++....+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3444556677777777777777665 223344455555566666 77777777766556666777766555554
Q ss_pred ---ChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCc---hHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC--
Q 043060 211 ---YLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL---ELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG-- 282 (707)
Q Consensus 211 ---~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-- 282 (707)
++++|+..|++... .+.. ..+..+...|...+.. ..+.+.+......| +......|..+|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~--~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFA--NGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp CHHHHHHHHHHHHHHHH--TTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCcCHHHHHHHHHHHHH--CCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 66788888887743 3322 2444444445443332 23444444444444 3456666777777776
Q ss_pred --CHHHHHHHHHhcCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHH
Q 043060 283 --DLVKARDLFESIEKRDVISWNVMIGGYTHTS---DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357 (707)
Q Consensus 283 --~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 357 (707)
..+.+..+++.....++.++..+...|...| +.++|++.|++..+.|. +
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~------------------------- 211 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-V------------------------- 211 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-S-------------------------
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-H-------------------------
Confidence 4556666677777777778888888888888 77888888887777652 2
Q ss_pred HHHHHhCCCCCcHHHHhHHhhHHHhc----CCHHHHHHHHhcCCCCChHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHC
Q 043060 358 AYIDKNHQKLNNVSLWTSLIDMYAKC----GNIKAAEQVFDGMGYKTLASWNAMISG-L--AMHGKADKALSLFSRMIGE 430 (707)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~li~~y~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~ 430 (707)
+...+..|..+|... ++.++|.+.|++....+...+..+... | ...+++++|++.|++..+.
T Consensus 212 -----------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~ 280 (452)
T 3e4b_A 212 -----------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA 280 (452)
T ss_dssp -----------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred -----------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence 222223344444333 567777777766553355566666665 3 3577888888888888876
Q ss_pred CCCCCHhHHHHHHHHHhccC-----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHhCCCC
Q 043060 431 GLQPDDITFVGVLSACNHAG-----LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR----AGLFDEAEALLKTMEMK 501 (707)
Q Consensus 431 g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~ 501 (707)
| +...+..|...|. .| ++++|..+|+... ..+...+..|..+|.. ..++++|.+.|++.-..
T Consensus 281 g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 281 D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 5 4555556666665 44 8888888888764 3456677777777765 34888898888886323
Q ss_pred CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 502 PDAAIWTSLLGACRV----HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 502 p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
-+......|...|.. ..|.++|...++++.+.++.........+......++.++|.++.++-.+
T Consensus 352 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 352 GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 345556666666654 45888999999998887764433333333333344566667766665544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-13 Score=139.14 Aligned_cols=242 Identities=11% Similarity=0.067 Sum_probs=161.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-ChhhHHhHHHHHhccCC-chHHHHHHHHHHHhCCCCCcHHHHhHHhh
Q 043060 301 SWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP-NDVTFLSVLPACAYLGA-LDLGKWIHAYIDKNHQKLNNVSLWTSLID 378 (707)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 378 (707)
.|+.+...+.+.|++++|++.|++.++. .| +...|..+...+...|+ +++|...+..+++..+. +..+|+.+..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~--~~~a~~~~g~ 174 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK--NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC--CHHHHHHHHH
Confidence 3444455555555555555555555543 22 23334444444445553 55555555555555544 6666777777
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhc-cCCHH
Q 043060 379 MYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNH-AGLLD 453 (707)
Q Consensus 379 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~-~g~~~ 453 (707)
+|.+.|++++|+..|+++. ..+...|..+..++.+.|++++|+..|+++++ +.|+. ..|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 7777777777777777653 44666777777778888888888888888887 55554 467777777777 55546
Q ss_pred HH-----HHHHHHhHHhcCCCCChHHHHHHHHHHHHcC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC-------
Q 043060 454 IG-----RQYFNAMIQDYKISPKLQHYGCMVDLLGRAG--LFDEAEALLKTMEMKPD-AAIWTSLLGACRVHG------- 518 (707)
Q Consensus 454 ~a-----~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g------- 518 (707)
+| +..|+.+++. .+-+...|..+..+|.+.| ++++|++.++++...|+ ...+..++..+.+.|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 66 4677777652 2335677888888888877 58888888887755565 778888888888764
Q ss_pred --ChhHHHHHHHHH-HccCCCCchhHHHHHHHhhh
Q 043060 519 --RLELGESVAKHL-LELEPENPGAYVLLSNMYAG 550 (707)
Q Consensus 519 --~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 550 (707)
.+++|+++++++ .+++|.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999999 89999888888887776653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-12 Score=124.68 Aligned_cols=168 Identities=13% Similarity=0.047 Sum_probs=83.7
Q ss_pred HHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHH
Q 043060 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSA 445 (707)
Q Consensus 370 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 445 (707)
..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+.+..|+. ..+..+...
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~ 150 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV 150 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHH
Confidence 3344444445555555555555554431 223444555555555555555555555555542233332 244445555
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A 523 (707)
+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...|+ ...+..+...+...|+.++|
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 228 (252)
T 2ho1_A 151 SLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTA 228 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHH
Confidence 55555555555555555442 1223444555555555555555555555553 22232 44455555555555555555
Q ss_pred HHHHHHHHccCCCCch
Q 043060 524 ESVAKHLLELEPENPG 539 (707)
Q Consensus 524 ~~~~~~~~~~~p~~~~ 539 (707)
.+.++++++..|+++.
T Consensus 229 ~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 229 ASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHCCCCHH
Confidence 5555555555555543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.52 E-value=7.1e-13 Score=128.81 Aligned_cols=197 Identities=8% Similarity=-0.027 Sum_probs=173.5
Q ss_pred HHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 043060 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSA 445 (707)
Q Consensus 370 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 445 (707)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 5678888999999999999999998763 447789999999999999999999999999884 44 45688888999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 522 (707)
+...|++++|..+|+.+.+ .+..| +...+..+...|.+.|++++|.+.++++ ...|+ ..+|..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999876 23445 5678888999999999999999999986 34454 8889999999999999999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 523 GESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 523 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
|...++++++..|.++..+..++.+|...|++++|.++++++.+...
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999987654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-13 Score=138.15 Aligned_cols=227 Identities=11% Similarity=0.102 Sum_probs=196.2
Q ss_pred hhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCC-HHHHHHHHhcCC---CCChHHHHHHHHH
Q 043060 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGN-IKAAEQVFDGMG---YKTLASWNAMISG 410 (707)
Q Consensus 335 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~ 410 (707)
..+..+...+...|+++.|...+..+++..+. +..+|+.+..+|.+.|+ +++|+..|+++. ..+...|+.+...
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 34566667788899999999999999999887 88999999999999997 999999999874 4578899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH-cCCH
Q 043060 411 LAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR-AGLF 488 (707)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~ 488 (707)
+...|++++|+..|+++++ +.|+.. .|..+..++...|++++|+..|+.+++. -+-+...|+.+..+|.+ .|..
T Consensus 176 ~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999 677654 8899999999999999999999999873 33477899999999999 6666
Q ss_pred HHH-----HHHHHhC-CCCCC-HHHHHHHHHHHHhcC--ChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcC-------
Q 043060 489 DEA-----EALLKTM-EMKPD-AAIWTSLLGACRVHG--RLELGESVAKHLLELEPENPGAYVLLSNMYAGAG------- 552 (707)
Q Consensus 489 ~~A-----~~~~~~~-~~~p~-~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 552 (707)
++| ++.+++. ...|+ ...|..+...+...| ++++|.+.++++ +.+|+++.++..|+++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 887 4777764 56676 889999999999988 689999999998 889999999999999999975
Q ss_pred --ChhhHHHHHHHH-hhCC
Q 043060 553 --RWDDVATIRTRL-NDKG 568 (707)
Q Consensus 553 --~~~~a~~~~~~m-~~~~ 568 (707)
..++|+++++++ .+.+
T Consensus 331 ~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 358999999998 5543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.8e-12 Score=124.08 Aligned_cols=224 Identities=12% Similarity=-0.008 Sum_probs=145.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHh
Q 043060 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377 (707)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 377 (707)
+..++..+...|...|++++|++.|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---------------------------------------~~~a~~~lg 45 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---------------------------------------ENSGCFNLG 45 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---------------------------------------CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---------------------------------------CHHHHHHHH
Confidence 34455556666666666666666666665521 233344444
Q ss_pred hHHHh----cCCHHHHHHHHhcCCC-CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 043060 378 DMYAK----CGNIKAAEQVFDGMGY-KTLASWNAMISGLAM----HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH 448 (707)
Q Consensus 378 ~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 448 (707)
.+|.. .|++++|.+.|++... .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 46 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 46 VLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHD 122 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHc
Confidence 55555 5555556555554422 245556666666666 667777777777766643 45566666666666
Q ss_pred ----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 043060 449 ----AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR----AGLFDEAEALLKTMEMKPDAAIWTSLLGACRV---- 516 (707)
Q Consensus 449 ----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~---- 516 (707)
.+++++|..+|+...+. + +...+..+...|.+ .+++++|.+.+++.-...+...+..+...+..
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred CCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 67777777777776653 2 45556666677766 77777777777765212346677777777777
Q ss_pred cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhh----cCChhhHHHHHHHHhhCCC
Q 043060 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAG----AGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 569 (707)
.+++++|...++++++.+| +.++..|+.+|.. .|++++|.+.+++..+.|.
T Consensus 199 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 199 TKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 7888888888888887765 5677888888888 8888888888888877665
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-12 Score=124.42 Aligned_cols=197 Identities=15% Similarity=0.070 Sum_probs=157.8
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLS 444 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 444 (707)
+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+ ..| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS--IKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChHHHHHHHH
Confidence 56677778888888888888888887653 34567888888888888888888888888887 344 4557778888
Q ss_pred HHhcc-CCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCh
Q 043060 445 ACNHA-GLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRL 520 (707)
Q Consensus 445 a~~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 520 (707)
.+... |++++|...++.+.+ .+..| +...+..+...|...|++++|.+.++++ ...|+ ...|..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 88888 899999998888876 23334 3567788888888999999999888876 33444 77888888889999999
Q ss_pred hHHHHHHHHHHccCC-CCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 521 ELGESVAKHLLELEP-ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 521 ~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
++|...++++++..| .++..+..++..+...|+.++|..+++.+.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999999999888 888888888888899999999998888887644
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=4e-13 Score=129.63 Aligned_cols=160 Identities=12% Similarity=0.113 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 481 (707)
.|..+...|...|++++|+..|+++.+. .| +..++..+...+...|++++|...++.+.+. .+.+...+..+...
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 134 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTV 134 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3444444444444444444444444431 22 2223333444444444444444444444331 11233334444444
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHH
Q 043060 482 LGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 559 (707)
|.+.|++++|.+.++++ ...| +...|..++..+...|++++|...++++++..|+++.++..++.+|...|++++|.+
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 214 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE 214 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHH
Confidence 44444444444444443 1122 234444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHhh
Q 043060 560 IRTRLND 566 (707)
Q Consensus 560 ~~~~m~~ 566 (707)
.++++.+
T Consensus 215 ~~~~~~~ 221 (243)
T 2q7f_A 215 MLDKAID 221 (243)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 4444443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.51 E-value=8.1e-13 Score=121.56 Aligned_cols=166 Identities=13% Similarity=0.125 Sum_probs=136.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 478 (707)
+...|..+...|.+.|++++|++.|++.++ +.|+.. ++..+..++.+.|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 456777888888888888888888888887 566554 7777888888888888888888887653 33456677777
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhh
Q 043060 479 VDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 556 (707)
...+...+++++|.+.+++. ...|+ ...|..+...+...|++++|++.++++++++|.++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88888899999999888875 44454 78888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 043060 557 VATIRTRLNDKGM 569 (707)
Q Consensus 557 a~~~~~~m~~~~~ 569 (707)
|.+.+++..+...
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999887543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-13 Score=130.10 Aligned_cols=215 Identities=9% Similarity=0.064 Sum_probs=166.2
Q ss_pred CChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHH
Q 043060 332 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMI 408 (707)
Q Consensus 332 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li 408 (707)
....++..+...+...|+++.|...+..+.+..+. +..++..+...|.+.|++++|.+.|+++. ..+...|..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE--DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 34556777778888999999999999999987765 78889999999999999999999999763 45778999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH
Q 043060 409 SGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488 (707)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 488 (707)
..|...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999842 335568888899999999999999999999874 344678899999999999999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhc
Q 043060 489 DEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551 (707)
Q Consensus 489 ~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 551 (707)
++|.+.++++ ...|+ ..+|..+...+...|++++|...++++++.+|+++.++..+..+....
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 9999999986 33444 889999999999999999999999999999999988888776655443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-12 Score=126.24 Aligned_cols=227 Identities=7% Similarity=-0.065 Sum_probs=177.2
Q ss_pred HhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh----hhHHHHH
Q 043060 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK--RDV----ISWNVMI 306 (707)
Q Consensus 233 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li 306 (707)
...+......+...|+++.|...+..+++.. +.+..++..+...|.+.|++++|...|++..+ .+. .+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455667778889999999999999999874 44566899999999999999999999998765 222 2488999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHh-hHHHhcCC
Q 043060 307 GGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI-DMYAKCGN 385 (707)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~y~~~g~ 385 (707)
..|...|++++|+..|++..+.. +.+...+..+...+...|+++.|...+..+.+..+. +..++..+. ..|. .++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~-~~~ 157 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT--DPKVFYELGQAYYY-NKE 157 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC--CHHHHHHHHHHHHH-TTC
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC--cHHHHHHHHHHHHH-HHH
Confidence 99999999999999999998864 235578888889999999999999999999888655 778888888 5555 469
Q ss_pred HHHHHHHHhcCC---CCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCCH------hHHHHHHHHHhccCCH
Q 043060 386 IKAAEQVFDGMG---YKTLASWNAMISGLAMHGK---ADKALSLFSRMIGEG-LQPDD------ITFVGVLSACNHAGLL 452 (707)
Q Consensus 386 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~ 452 (707)
+++|.+.|+++. ..+...|..+...+...|+ +++|+..|++..+.. -.|+. .+|..+...+...|++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 999999999874 3456788888888888888 888999998887631 11331 2455555556666666
Q ss_pred HHHHHHHHHhHH
Q 043060 453 DIGRQYFNAMIQ 464 (707)
Q Consensus 453 ~~a~~~~~~~~~ 464 (707)
++|.+.|+.+.+
T Consensus 238 ~~A~~~~~~al~ 249 (272)
T 3u4t_A 238 VKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666666554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-12 Score=120.59 Aligned_cols=207 Identities=14% Similarity=0.106 Sum_probs=150.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhh
Q 043060 299 VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378 (707)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 378 (707)
...|..+...+...|++++|++.|+++.+. .+. +..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----------------------------------~~~--~~~~~~~l~~ 50 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS-----------------------------------DPK--NELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------CTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----------------------------------Ccc--chHHHHHHHH
Confidence 445666666666666666666666666553 222 4445666666
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHH
Q 043060 379 MYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMH-GKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLD 453 (707)
Q Consensus 379 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 453 (707)
.|...|++++|.+.|+++. ..+...|..+...|... |++++|+..|+++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 6677777777777776552 33566777777888888 888888888888877433444 346777778888888888
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043060 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP--DAAIWTSLLGACRVHGRLELGESVAKHL 530 (707)
Q Consensus 454 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 530 (707)
+|...|+.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...+..+...+...|+.+.|...++.+
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 888888888763 2335677888888999999999999998886 3334 4777777888889999999999999999
Q ss_pred HccCCCCchhHHHH
Q 043060 531 LELEPENPGAYVLL 544 (707)
Q Consensus 531 ~~~~p~~~~~~~~l 544 (707)
.+..|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999887766554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=6.9e-12 Score=123.51 Aligned_cols=224 Identities=13% Similarity=-0.004 Sum_probs=167.9
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChhhHHhHH
Q 043060 267 NLHVTNALIDMYSKCGDLVKARDLFESIEKR-DVISWNVMIGGYTH----TSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341 (707)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 341 (707)
+..++..+...|.+.|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------ 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------------
Confidence 5567777888888889999999988887654 56678888888888 899999999998887654
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHh----cCCHHHHHHHHhcCCC-CChHHHHHHHHHHHH---
Q 043060 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK----CGNIKAAEQVFDGMGY-KTLASWNAMISGLAM--- 413 (707)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~--- 413 (707)
+...+..+..+|.. .+++++|.+.|++... .+..++..+...|..
T Consensus 73 ---------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 73 ---------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKV 125 (273)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSS
T ss_pred ---------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCC
Confidence 23334445555555 6666666666665432 355566777777777
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH----
Q 043060 414 -HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNH----AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR---- 484 (707)
Q Consensus 414 -~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---- 484 (707)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|...|+...+. .+...+..+..+|..
T Consensus 126 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSS
T ss_pred cccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCC
Confidence 788888888888887754 45566666677776 78888888888887763 245677778888888
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCC
Q 043060 485 AGLFDEAEALLKTM-EMKPDAAIWTSLLGACRV----HGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 485 ~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~ 537 (707)
.+++++|.+.+++. ... +...+..+...+.. .+++++|.+.++++++.+|++
T Consensus 199 ~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 199 TKNFKEALARYSKACELE-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 89999999988876 333 37778888888888 899999999999999999864
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.3e-12 Score=133.25 Aligned_cols=343 Identities=11% Similarity=-0.022 Sum_probs=180.6
Q ss_pred HHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCc---hHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 043060 202 LITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSL---ELGNWVCSLIEGHGLGSNLHVTNALIDMY 278 (707)
Q Consensus 202 li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 278 (707)
+...+.+.|++++|+++|++... .+ +...+..+-..+...|+. ++|...+....+. ++..+..|..++
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~--~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAE--LG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HT---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH--CC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 45566677777777777777643 33 222233333334445555 6677776666643 444555555544
Q ss_pred HhcC-----CHHHHHHHHHhcCCC-ChhhHHHHHHHHHhcCCHH---HHHHHHHHHhhcCCCCChhhHHhHHHHHhccCC
Q 043060 279 SKCG-----DLVKARDLFESIEKR-DVISWNVMIGGYTHTSDYK---EALMLFRQMLQSNIEPNDVTFLSVLPACAYLGA 349 (707)
Q Consensus 279 ~~~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 349 (707)
...| +.++|...|++..++ +..++..+...|...+..+ ++.+.+......|. ......+...+...+.
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGT 156 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTC
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCC
Confidence 4444 566777777665543 4446666666666554432 34444444444332 2333344444555554
Q ss_pred chHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcC---CHHHHHHHHhcCC---CCChHHHHHHHHHHHHc----CCHHH
Q 043060 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG---NIKAAEQVFDGMG---YKTLASWNAMISGLAMH----GKADK 419 (707)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~----g~~~~ 419 (707)
++.+......+.+.-... ++..+..|..+|.+.| +.++|.+.|++.. ..+...+..+...|... +++++
T Consensus 157 ~~~~~~~a~~~~~~a~~~-~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNT-TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGGGHHHHHHHHHHHTTT-CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cccCHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 444433333222222221 3336667777777777 7777777776553 22333445566666443 56777
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHH-H--hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcC-----CHHHH
Q 043060 420 ALSLFSRMIGEGLQPDDITFVGVLSA-C--NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG-----LFDEA 491 (707)
Q Consensus 420 A~~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A 491 (707)
|+..|++.. .| +...+..+... + ...+++++|..+|+...+. | +...+..|..+|. .| ++++|
T Consensus 236 A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 236 AQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 777777765 22 22344444444 2 4567777777777776653 2 5556666666665 44 77777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhh----cCChhhHHHHHHH
Q 043060 492 EALLKTMEMKPDAAIWTSLLGACRV----HGRLELGESVAKHLLELEPENPGAYVLLSNMYAG----AGRWDDVATIRTR 563 (707)
Q Consensus 492 ~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 563 (707)
.+.|++.- .-+...+..|...|.. ..++++|...++++.+.+ ++.+...|+.+|.. ..+.++|...+++
T Consensus 307 ~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 307 EAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 77777766 4446666666666555 337777777777776643 45567777777764 3467777777777
Q ss_pred HhhCCC
Q 043060 564 LNDKGM 569 (707)
Q Consensus 564 m~~~~~ 569 (707)
..+.|.
T Consensus 384 A~~~g~ 389 (452)
T 3e4b_A 384 AKAQDT 389 (452)
T ss_dssp HHTTCC
T ss_pred HHHCCC
Confidence 777665
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=3e-12 Score=121.23 Aligned_cols=110 Identities=17% Similarity=0.139 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 043060 415 GKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEA 493 (707)
Q Consensus 415 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 493 (707)
|++++|+..|++..+ ..|+. ..+..+..++...|++++|...|+++.+. . .+...+..+..+|...|++++|+.
T Consensus 98 g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~ 172 (217)
T 2pl2_A 98 GYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALA 172 (217)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444444 23332 23334444444444444444444444432 1 334444444444444444444444
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHH
Q 043060 494 LLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKH 529 (707)
Q Consensus 494 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 529 (707)
.|++. ...|+ ...+..+...+...|++++|...+++
T Consensus 173 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 173 QYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44443 22332 44444444444444444444444443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-13 Score=142.78 Aligned_cols=207 Identities=7% Similarity=-0.036 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCH-HHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043060 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNI-KAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRM 427 (707)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 427 (707)
.+.+.+......... +...+..+...|...|++ ++|++.|++.. ..+...|..+...|...|++++|++.|++.
T Consensus 86 ~al~~l~~~~~~~~~--~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 86 KTLQQMEEVLGSAQV--EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHTTCCC--CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCch--hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444443333332 677788888888888888 88888888753 346778999999999999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHhcc---------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc--------CCHHH
Q 043060 428 IGEGLQPDDITFVGVLSACNHA---------GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA--------GLFDE 490 (707)
Q Consensus 428 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~ 490 (707)
.+ ..|+...+..+...+... |++++|...|+++.+. .+.+...|..+..+|... |++++
T Consensus 164 l~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 98 678877888889999999 9999999999998873 334678899999999998 99999
Q ss_pred HHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 491 AEALLKTM-EMKP----DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 491 A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
|++.|++. ...| +...|..+...+...|++++|.+.++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999986 4566 58899999999999999999999999999999999999999999999999999999765444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-10 Score=124.02 Aligned_cols=415 Identities=9% Similarity=0.021 Sum_probs=269.9
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC---hHHHHHHHHHHHHhC-CCCChhHH
Q 043060 93 PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISA---ISEGKQIHAHVLKLG-LESDPFVH 168 (707)
Q Consensus 93 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~~ 168 (707)
.|...|..++..+.+.+.++.+..+|+++... ++.....|..-+..-.+.++ ++.+.++|+..+... ..|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47778888888888888888899999888875 34455667777777777777 888888888888654 13777788
Q ss_pred HHHHHHHHhCCCh--------hHHHHHHhcC-------CCCCeehHHHHHHHHHh---------CCChhHHHHHHHhCcc
Q 043060 169 TSLINMYAQNGEL--------ESARLVFNKS-------SLRDAVSYTALITGYAS---------RGYLDDARQLFDEMPI 224 (707)
Q Consensus 169 ~~li~~~~~~g~~--------~~A~~~f~~~-------~~~~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~ 224 (707)
...+....+.++. +...++|+.. ...+...|...+..... +++.+.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8777766665543 2334666642 11234567777766542 2345667777777742
Q ss_pred ccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHh-------cCC-
Q 043060 225 REENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFES-------IEK- 296 (707)
Q Consensus 225 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~~- 296 (707)
.....-..+|..........+ ...+..++.+. ..+++.|...+.. +..
T Consensus 223 --iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 223 --QPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp --SCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred --CccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhc
Confidence 111111122221111111101 11122222111 1122333333322 110
Q ss_pred -------------C--C------hhhHHHHHHHHHhcC-------CHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccC
Q 043060 297 -------------R--D------VISWNVMIGGYTHTS-------DYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLG 348 (707)
Q Consensus 297 -------------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 348 (707)
| + ...|...+.---..+ ..+.+..+|++.+... +-+...|.....-+...|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcC
Confidence 0 0 134555554433332 1234566788877652 335566666677777788
Q ss_pred CchHHH-HHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC-------------C------------ChH
Q 043060 349 ALDLGK-WIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-------------K------------TLA 402 (707)
Q Consensus 349 ~~~~a~-~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------------~------------~~~ 402 (707)
+.+.|. .+++..+...+. +..++..++...-+.|++++|.++|+++.. | ...
T Consensus 358 ~~~~a~r~il~rAi~~~P~--s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQCIPN--SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp CCTTHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 888996 999999987664 777888899999999999999999987642 2 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHhc-cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGE-GLQPDDITFVGVLSACNH-AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 480 (707)
.|...+....+.|+.+.|..+|.+.++. +. +....|...+..-.+ .++.+.|..+|+...+.+ +.+...|...++
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~ 512 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHH
Confidence 6888888888899999999999999885 21 122334332222223 355899999999998854 345666778888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 481 LLGRAGLFDEAEALLKTM-EMKP----DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
.....|+.+.|..+|++. ...| ....|..++..-..+|+.+.+..+.+++.+..|+++
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 888999999999999996 3333 257899999999999999999999999999999875
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.3e-13 Score=139.14 Aligned_cols=290 Identities=13% Similarity=0.060 Sum_probs=185.9
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHcCCCch---hHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----ChhhH
Q 043060 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN---LHVTNALIDMYSKCGDLVKARDLFESIEK-----R----DVISW 302 (707)
Q Consensus 235 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~ 302 (707)
.+......+...|++++|...+..+.+...... ..++..+...|...|++++|...|++..+ . ...+|
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 344444455555666666666655555431111 24556666667777777777766665431 1 13456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHH
Q 043060 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIE-PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381 (707)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 381 (707)
..+...|...|++++|+..+++..+.... ++... ...++..+...|.
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------------------------~~~~~~~l~~~~~ 138 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG--------------------------------EARALYNLGNVYH 138 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc--------------------------------hHHHHHHHHHHHH
Confidence 66777777777777777777776542100 01000 1234555555566
Q ss_pred hcCC--------------------HHHHHHHHhcCC-------CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043060 382 KCGN--------------------IKAAEQVFDGMG-------YK--TLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432 (707)
Q Consensus 382 ~~g~--------------------~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 432 (707)
..|+ +++|.+.+++.. .. ...+|..+...|...|++++|+..|++..+...
T Consensus 139 ~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 139 AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 6666 666665555431 11 123677788888888888888888888765210
Q ss_pred -CCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC----C
Q 043060 433 -QPD----DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK----LQHYGCMVDLLGRAGLFDEAEALLKTM----E 499 (707)
Q Consensus 433 -~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~ 499 (707)
.++ ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.+++. +
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 122 126777788888899999999988877653211112 457778889999999999999998875 1
Q ss_pred CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC------CCchhHHHHHHHhhhcCChhh
Q 043060 500 MKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEP------ENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 500 ~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~ 556 (707)
..++ ..++..+...+...|++++|...+++++++.+ ....++..++.+|...|+...
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 1122 56788899999999999999999999988632 235678888889888887644
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-12 Score=135.92 Aligned_cols=199 Identities=15% Similarity=0.051 Sum_probs=156.0
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCC-----CC----hHHHHHHHHHHHHcCC--------------------HHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-----KT----LASWNAMISGLAMHGK--------------------ADK 419 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~ 419 (707)
...++..+...|...|++++|...|++... .+ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 345677788888888898888888876532 12 3478888999999999 999
Q ss_pred HHHHHHHHHHC----CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHH
Q 043060 420 ALSLFSRMIGE----GLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK----LQHYGCMVDLLGRAGLFDE 490 (707)
Q Consensus 420 A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 490 (707)
|+..+++..+. +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999887652 11222 236778888999999999999999988754222222 2378889999999999999
Q ss_pred HHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC------chhHHHHHHHhhhcCChhh
Q 043060 491 AEALLKTM----EMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN------PGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 491 A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~ 556 (707)
|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999875 11122 5678889999999999999999999999875432 5688899999999999999
Q ss_pred HHHHHHHHhhC
Q 043060 557 VATIRTRLNDK 567 (707)
Q Consensus 557 a~~~~~~m~~~ 567 (707)
|.+.+++..+.
T Consensus 326 A~~~~~~al~~ 336 (406)
T 3sf4_A 326 AMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988753
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.5e-13 Score=139.50 Aligned_cols=268 Identities=12% Similarity=0.057 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch----hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHH
Q 043060 269 HVTNALIDMYSKCGDLVKARDLFESIEK--R-DV----ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVL 341 (707)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 341 (707)
..+..+...+...|++++|...|++..+ + +. ..|..+...|...|++++|+..|++..+...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----------- 117 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK----------- 117 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----------
Confidence 3444556666777777777777766542 2 22 3566666667777777777777766654200
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCC---------ChHHHHHHHHHHH
Q 043060 342 PACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYK---------TLASWNAMISGLA 412 (707)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~ 412 (707)
+.+..+....++..+...|...|++++|...|++.... ...+|..+...|.
T Consensus 118 --------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 118 --------------------SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp --------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred --------------------HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 00000003345556666666666666666666554211 2235666677777
Q ss_pred HcCC-----------------HHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 043060 413 MHGK-----------------ADKALSLFSRMIGE----GLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470 (707)
Q Consensus 413 ~~g~-----------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 470 (707)
..|+ +++|++.+++..+. +-.|. ..++..+...+...|++++|...+++..+...-.+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 7777 77777777765541 11121 22666777778888888888888887765321111
Q ss_pred C----hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--
Q 043060 471 K----LQHYGCMVDLLGRAGLFDEAEALLKTM-EM---KPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPE-- 536 (707)
Q Consensus 471 ~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~-- 536 (707)
+ ...+..+...|...|++++|.+.+++. .. ..+ ..++..+...+...|++++|...+++++++.+.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 2 236777888888999999998888775 11 111 567888889999999999999999999886443
Q ss_pred ----CchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 537 ----NPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 537 ----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
...++..++.+|...|++++|.+.+++..+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 2348889999999999999999999988764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-12 Score=130.12 Aligned_cols=266 Identities=16% Similarity=0.090 Sum_probs=173.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--C-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHH
Q 043060 271 TNALIDMYSKCGDLVKARDLFESIEK--R-D----VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPA 343 (707)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 343 (707)
+......+...|++++|...|++..+ + + ...|..+...|...|++++|++.+++..+..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-------------- 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--------------
Confidence 33445555666666666666655432 1 2 2345555556666666666666665544310
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC-----CC----hHHHHHHHHHHHHc
Q 043060 344 CAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-----KT----LASWNAMISGLAMH 414 (707)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~ 414 (707)
.+.+..+....++..+...|...|++++|...|++... .+ ..++..+...|...
T Consensus 74 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 74 -----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 136 (338)
T ss_dssp -----------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc
Confidence 00011110344566667777777777777776665421 12 23666777777777
Q ss_pred CC--------------------HHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 043060 415 GK--------------------ADKALSLFSRMIGE----GLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS 469 (707)
Q Consensus 415 g~--------------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 469 (707)
|+ +++|++.+++.... +..|. ..++..+...+...|++++|...++...+...-.
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 77 77887777776541 11121 2256677778888889998888888776432111
Q ss_pred CC----hHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 043060 470 PK----LQHYGCMVDLLGRAGLFDEAEALLKTM----EMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 470 p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 537 (707)
++ ...+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++++..+..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 22 236778888899999999999988875 11122 5678888899999999999999999998865432
Q ss_pred ------chhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 538 ------PGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 538 ------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
..++..++.+|.+.|++++|.+.+++..+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 447889999999999999999999998764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-12 Score=125.07 Aligned_cols=216 Identities=10% Similarity=-0.153 Sum_probs=127.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHH
Q 043060 302 WNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381 (707)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 381 (707)
|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|+++.|...+..+++..+. +..++..+..+|.
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~ 122 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT--YNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc--ccHHHHHHHHHHH
Confidence 3344444444444444444444444322 112333444444444444444444444444444333 4556677777777
Q ss_pred hcCCHHHHHHHHhcCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHH
Q 043060 382 KCGNIKAAEQVFDGMG--YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459 (707)
Q Consensus 382 ~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 459 (707)
+.|++++|.+.|+++. .++...+...+..+...|++++|+..+++.... .|+......++..+...++.++|...+
T Consensus 123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~ 200 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGWNIVEFYLGNISEQTLMERL 200 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHHHHHHHHTTSSCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHhcCHHHHHHHH
Confidence 7777777777777653 222222333334445668889999999877763 333333344677777888888888888
Q ss_pred HHhHHhcCCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043060 460 NAMIQDYKISPK-----LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAAIWTSLLGACRVHGRLELGESVA 527 (707)
Q Consensus 460 ~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 527 (707)
..+.+ ..|+ ...+..+...|.+.|++++|.+.|+++ ...|+. +.....++...|++++|++.+
T Consensus 201 ~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 201 KADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 87653 2222 467888889999999999999999886 556643 223355667778888887765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-12 Score=134.71 Aligned_cols=270 Identities=13% Similarity=0.023 Sum_probs=194.8
Q ss_pred HhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchh----HHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------Ch
Q 043060 233 ESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNL----HVTNALIDMYSKCGDLVKARDLFESIEKR---------DV 299 (707)
Q Consensus 233 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~ 299 (707)
...+..+...+...|++++|...+..+++.... +. .++..+...|...|++++|...|++..+. ..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344556667788999999999999999997532 32 57888999999999999999998876531 34
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhh
Q 043060 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE-PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID 378 (707)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 378 (707)
.+|..+...|...|++++|+..|++..+.... .+.. ....++..+..
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------------------~~~~~~~~l~~ 174 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL--------------------------------SEGRALYNLGN 174 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH--------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchH--------------------------------HHHHHHHHHHH
Confidence 56788888999999999999999887653100 0000 03334555666
Q ss_pred HHHhcCC-----------------HHHHHHHHhcCC-------CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043060 379 MYAKCGN-----------------IKAAEQVFDGMG-------YK--TLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432 (707)
Q Consensus 379 ~y~~~g~-----------------~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 432 (707)
.|...|+ +++|.+.+++.. .+ ....|..+...|...|++++|+..|++..+...
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 6666666 666666665432 11 223677788888888888888888888766211
Q ss_pred -CCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHhC-----
Q 043060 433 -QPD----DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP----KLQHYGCMVDLLGRAGLFDEAEALLKTM----- 498 (707)
Q Consensus 433 -~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~----- 498 (707)
.++ ..++..+...+...|++++|...++...+...-.. ....+..+..+|.+.|++++|.+.+++.
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 012 12677788888899999999999887765321111 1456778889999999999999999875
Q ss_pred --CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 043060 499 --EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEP 535 (707)
Q Consensus 499 --~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 535 (707)
+..+. ..++..+...+...|++++|...+++++++.+
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 11111 45788899999999999999999999998876
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.2e-12 Score=140.90 Aligned_cols=163 Identities=17% Similarity=0.222 Sum_probs=136.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCM 478 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 478 (707)
+..+|+.+...|.+.|++++|++.|++.++ +.|+.. ++..+..++.+.|++++|.+.|++..+. -+-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 345777888888888888888888888887 667654 7788888888888888888888888763 22356788888
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhh
Q 043060 479 VDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 556 (707)
..+|.+.|++++|++.|++. .+.|+ ...|..+..++...|++++|++.|+++++++|+++.++..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88999999999999988885 56676 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 043060 557 VATIRTRLND 566 (707)
Q Consensus 557 a~~~~~~m~~ 566 (707)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.40 E-value=7.7e-12 Score=114.92 Aligned_cols=166 Identities=13% Similarity=0.079 Sum_probs=144.8
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLS 444 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 444 (707)
+..+|..|...|.+.|++++|++.|++.. ..+..+|..+...|.+.|++++|+..+++... ..|+. ..+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 67789999999999999999999999763 45778999999999999999999999999988 45544 46777778
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 043060 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 445 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 522 (707)
.+...++++.+...+....+. .+.+...+..+..+|.+.|++++|++.|++. ...|+ ..+|..+...+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 889999999999999998763 3446788899999999999999999999986 55665 8899999999999999999
Q ss_pred HHHHHHHHHccCCCCc
Q 043060 523 GESVAKHLLELEPENP 538 (707)
Q Consensus 523 A~~~~~~~~~~~p~~~ 538 (707)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999753
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.4e-12 Score=126.52 Aligned_cols=270 Identities=13% Similarity=0.067 Sum_probs=185.8
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHcCCCch---hHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------ChhhH
Q 043060 235 TVVTVLSACAHMGSLELGNWVCSLIEGHGLGSN---LHVTNALIDMYSKCGDLVKARDLFESIEKR---------DVISW 302 (707)
Q Consensus 235 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~ 302 (707)
.+......+...|+++.|...++.+.+...... ..++..+...|...|++++|...|++..+. ...++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 445556677889999999999999998742221 467888999999999999999999876421 24567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHH
Q 043060 303 NVMIGGYTHTSDYKEALMLFRQMLQSNIE-PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYA 381 (707)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 381 (707)
..+...|...|++++|+..+++..+.... ++... ...++..+...|.
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------------------------~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG--------------------------------EARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH--------------------------------HHHHHHHHHHHHH
Confidence 78888899999999999999887653111 11100 1223444555555
Q ss_pred hcCC--------------------HHHHHHHHhcCC-------CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043060 382 KCGN--------------------IKAAEQVFDGMG-------YK--TLASWNAMISGLAMHGKADKALSLFSRMIGEGL 432 (707)
Q Consensus 382 ~~g~--------------------~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 432 (707)
..|+ +++|.+.+++.. .+ ....+..+...|...|++++|+..+++..+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5555 555555554431 11 123567777778888888888888887765210
Q ss_pred -CCC----HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC-----
Q 043060 433 -QPD----DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK----LQHYGCMVDLLGRAGLFDEAEALLKTM----- 498 (707)
Q Consensus 433 -~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----- 498 (707)
.++ ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 111 126677777888888888888888877643211122 456777888899999999999988875
Q ss_pred --CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 499 --EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 499 --~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
+..+. ..++..+...+...|++++|...+++++++.+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 11111 457888899999999999999999999987654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-09 Score=118.90 Aligned_cols=215 Identities=8% Similarity=-0.032 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHH-HHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043060 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAE-QVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRM 427 (707)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 427 (707)
....+++.++...+. ...+|...+..+...|+.++|. ++|++.. ..+...|-..+....+.|++++|.++|+++
T Consensus 327 Rv~~~Ye~aL~~~p~--~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCF--APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 355678888887766 7888999999999999999996 9998763 346677888899999999999999999999
Q ss_pred HHCC---------CCCC------------HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcC
Q 043060 428 IGEG---------LQPD------------DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG 486 (707)
Q Consensus 428 ~~~g---------~~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 486 (707)
+... -.|+ ...|...+....+.|.++.|+.+|..+.+.. ..+....|...+.+-.+.|
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhC
Confidence 8631 0142 2257777777778899999999999998741 1123344544444444554
Q ss_pred -CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC---CchhHHHHHHHhhhcCChhhHHHH
Q 043060 487 -LFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPE---NPGAYVLLSNMYAGAGRWDDVATI 560 (707)
Q Consensus 487 -~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~ 560 (707)
+.+.|.++|+.. ..-| +...|...+......|+.+.|..+|+++++..|+ ....|..++..-.+.|..+.+.++
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 589999999985 3234 4778889999888999999999999999998873 456788888888999999999999
Q ss_pred HHHHhhCCC
Q 043060 561 RTRLNDKGM 569 (707)
Q Consensus 561 ~~~m~~~~~ 569 (707)
.+++.+.-.
T Consensus 564 ~~R~~~~~P 572 (679)
T 4e6h_A 564 EKRFFEKFP 572 (679)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHhCC
Confidence 999988655
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.4e-11 Score=124.16 Aligned_cols=230 Identities=11% Similarity=0.052 Sum_probs=128.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHH
Q 043060 274 LIDMYSKCGDLVKARDLFESIEK-----RD----VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC 344 (707)
Q Consensus 274 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 344 (707)
....+...|++++|...|++..+ +| ..+|..+...|...|++++|+..+.+..+.-...+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~----------- 177 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE----------- 177 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS-----------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc-----------
Confidence 45556677777777777766543 11 24566666777777777777777766654210000
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC-----CC----hHHHHHHHHHHHHcC
Q 043060 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-----KT----LASWNAMISGLAMHG 415 (707)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g 415 (707)
+. .+....+++.+...|...|++++|.+.|++... .+ ..++..+...|...|
T Consensus 178 ----~~---------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 178 ----AY---------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp ----TT---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ----cc---------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence 00 000234566677777777777777777765421 11 135666777777777
Q ss_pred CHHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcC---CCCChHHHHHHHHHHHHcCC
Q 043060 416 KADKALSLFSRMIGE----GLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYK---ISPKLQHYGCMVDLLGRAGL 487 (707)
Q Consensus 416 ~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~ 487 (707)
++++|+..|++..+. +..|+ ..++..+...+...|++++|...++...+... .+.....+..+...|...|+
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 777777777776651 22132 23566666667777777777777666544211 11111223445555555665
Q ss_pred ---HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 043060 488 ---FDEAEALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLEL 533 (707)
Q Consensus 488 ---~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 533 (707)
+++|+.++++.+..|+ ..++..+...+...|++++|...+++++++
T Consensus 319 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 319 EEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5556666665543333 334445555555555555555555555543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.4e-11 Score=119.96 Aligned_cols=162 Identities=12% Similarity=0.081 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI--TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 479 (707)
..|..++..+.+.|++++|..+|+++++ +.|+.. .|..+...+.+.|++++|..+|+.+.+. .+++...|...+
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a 175 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAA 175 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 3444444444445555555555555544 333321 3444444444445555555555544431 112222332222
Q ss_pred HHHH-HcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc---CCC-CchhHHHHHHHhhhcC
Q 043060 480 DLLG-RAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLEL---EPE-NPGAYVLLSNMYAGAG 552 (707)
Q Consensus 480 ~~~~-~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g 552 (707)
.... ..|++++|.++|++. ...|+ ...|..++..+...|++++|..+|+++++. .|+ ....|..++..+.+.|
T Consensus 176 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g 255 (308)
T 2ond_A 176 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2211 135555555555443 22222 445555555555555555555555555553 221 3344445555555555
Q ss_pred ChhhHHHHHHHHhhC
Q 043060 553 RWDDVATIRTRLNDK 567 (707)
Q Consensus 553 ~~~~a~~~~~~m~~~ 567 (707)
+.++|..+++++.+.
T Consensus 256 ~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 256 DLASILKVEKRRFTA 270 (308)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 555555555555443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.7e-10 Score=113.21 Aligned_cols=216 Identities=12% Similarity=0.090 Sum_probs=162.7
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHhHHHHHh-------ccCCc-------hHHHHHHHHHHH-hCCCCCcHHHHhHHhhHH
Q 043060 316 KEALMLFRQMLQSNIEPNDVTFLSVLPACA-------YLGAL-------DLGKWIHAYIDK-NHQKLNNVSLWTSLIDMY 380 (707)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~~li~~y 380 (707)
++|+..|++..... +-+...|......+. ..|+. ++|..+++..++ ..+. +..+|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~--~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK--NMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc--cHHHHHHHHHHH
Confidence 45666666665532 123334444444333 34665 777777777777 3544 677888999999
Q ss_pred HhcCCHHHHHHHHhcCCC---CChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHh-ccCCHHH
Q 043060 381 AKCGNIKAAEQVFDGMGY---KTLA-SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACN-HAGLLDI 454 (707)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~---~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~-~~g~~~~ 454 (707)
.+.|++++|.++|+++.. .+.. .|..++..+.+.|++++|..+|++..+. .|+. ..|........ ..|++++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999987643 2444 8999999999999999999999999984 3433 34443333322 3799999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCCC--HHHHHHHHHHHHhcCChhHHHHHHH
Q 043060 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-E---MKPD--AAIWTSLLGACRVHGRLELGESVAK 528 (707)
Q Consensus 455 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~ 528 (707)
|..+|+...+.. +.+...|..++..+.+.|++++|..+|++. . ..|+ ...|..++......|+.+.|..+++
T Consensus 188 A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 188 AFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998743 346788999999999999999999999986 2 3553 6789999999999999999999999
Q ss_pred HHHccCCCCc
Q 043060 529 HLLELEPENP 538 (707)
Q Consensus 529 ~~~~~~p~~~ 538 (707)
++++..|+++
T Consensus 266 ~a~~~~p~~~ 275 (308)
T 2ond_A 266 RRFTAFREEY 275 (308)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHccccc
Confidence 9999999765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.4e-12 Score=126.07 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=30.2
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
..+...+.+.++...++++....|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 252 GKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3334455566666677777777777777788888888888888888888877654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.6e-11 Score=123.38 Aligned_cols=229 Identities=10% Similarity=0.047 Sum_probs=166.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCC-CCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhc
Q 043060 305 MIGGYTHTSDYKEALMLFRQMLQSNI-EPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC 383 (707)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 383 (707)
....+...|++++|+..|++..+.-. .+|... ...++..+...|...
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------------------------~a~~~~~lg~~~~~~ 156 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIE--------------------------------KAEFFFKMSESYYYM 156 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH--------------------------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHH--------------------------------HHHHHHHHHHHHHHc
Confidence 44556677777777777777765310 112111 345567777788888
Q ss_pred CCHHHHHHHHhcCC-----CC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----hHHHHHHHHHhc
Q 043060 384 GNIKAAEQVFDGMG-----YK-----TLASWNAMISGLAMHGKADKALSLFSRMIGEGL-QPDD----ITFVGVLSACNH 448 (707)
Q Consensus 384 g~~~~A~~~~~~~~-----~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~ 448 (707)
|++++|...+++.. .. ...+++.+...|...|++++|+..|++..+..- .++. .++..+...+..
T Consensus 157 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 236 (383)
T 3ulq_A 157 KQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS 236 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 88888777776542 11 134788899999999999999999999876311 1221 378888999999
Q ss_pred cCCHHHHHHHHHHhHHhc---CC-CCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhc
Q 043060 449 AGLLDIGRQYFNAMIQDY---KI-SPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EM-----KPD-AAIWTSLLGACRVH 517 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~---~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~ll~~~~~~ 517 (707)
.|++++|...|++..+-. +. +....++..+...|.+.|++++|.+.+++. .. .|. ...+..+...+...
T Consensus 237 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~ 316 (383)
T 3ulq_A 237 QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSG 316 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence 999999999999887621 22 234567888999999999999999999885 11 222 33456777888888
Q ss_pred CC---hhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 518 GR---LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 518 g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
|+ +++|...+++. ...|.....+..++.+|...|++++|...+++..+
T Consensus 317 ~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 317 PDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88 77777777766 33344556888999999999999999999999865
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.30 E-value=7.3e-11 Score=108.03 Aligned_cols=161 Identities=17% Similarity=0.138 Sum_probs=97.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH
Q 043060 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR 484 (707)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 484 (707)
..+...+...|++++|+..|+++.+. .+.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 33344444444444444444444331 1112234444444444555555555555544432 12244555556666666
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHH
Q 043060 485 AGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRT 562 (707)
Q Consensus 485 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 562 (707)
.|++++|.+.++++ ...| +...|..++..+...|++++|...++++++..|.++.++..++.+|...|++++|.+.++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666654 2223 466777777788888888888888888888888888888888888888888888888888
Q ss_pred HHhhCC
Q 043060 563 RLNDKG 568 (707)
Q Consensus 563 ~m~~~~ 568 (707)
+..+..
T Consensus 169 ~~~~~~ 174 (186)
T 3as5_A 169 KANELD 174 (186)
T ss_dssp HHHHHH
T ss_pred HHHHcC
Confidence 776543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-09 Score=112.81 Aligned_cols=196 Identities=16% Similarity=0.055 Sum_probs=137.5
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCC-------C---C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C--CH
Q 043060 372 LWTSLIDMYAKCGNIKAAEQVFDGMG-------Y---K-TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQ--P--DD 436 (707)
Q Consensus 372 ~~~~li~~y~~~g~~~~A~~~~~~~~-------~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~ 436 (707)
.+..+...|...|++++|.+.+++.. . + ....+..+...+...|++++|...+++.....-. + ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 35566777778888888877776542 1 1 1235666777888889999999999888763211 1 12
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HH
Q 043060 437 ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYG-----CMVDLLGRAGLFDEAEALLKTM-EMKPD-----AA 505 (707)
Q Consensus 437 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~ 505 (707)
.++..+...+...|++++|...++..............+. ..+..+...|++++|...+++. ...|. ..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 3566777788889999999999988765322211111222 2344577899999999999986 22221 23
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCC-----C-chhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 506 IWTSLLGACRVHGRLELGESVAKHLLELEPE-----N-PGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 506 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
.+..+...+...|++++|...++++++..+. + ..++..++.++...|+.++|...+++..+.
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5677888899999999999999998875432 1 236778899999999999999999887653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-10 Score=109.59 Aligned_cols=203 Identities=9% Similarity=0.020 Sum_probs=111.9
Q ss_pred ChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHH
Q 043060 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMIS 409 (707)
Q Consensus 333 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 409 (707)
|...+......+...|++++|...+..+++..+.. +...+..+..+|.+.|++++|.+.|++.. ..+...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 33455555555666666666666666666655422 44445556666666666666666666542 223445666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHh--------HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---hHHHHHH
Q 043060 410 GLAMHGKADKALSLFSRMIGEGLQPDDI--------TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK---LQHYGCM 478 (707)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 478 (707)
.|...|++++|+..|++..+ ..|+.. .|..+...+...|++++|...|+.+.+ ..|+ ...|..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 66666666666666666665 344322 344445555566666666666666543 2333 3445555
Q ss_pred HHHHHHcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 479 VDLLGRAGLF--DEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 479 i~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
..+|...|+. ++|..+ . ..+...+..+. ....+.+++|...++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 5555444432 111111 0 11222222222 22344568888888888888888887777666554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-10 Score=111.46 Aligned_cols=189 Identities=12% Similarity=-0.018 Sum_probs=96.1
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCC---C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG---Y-KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVL 443 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll 443 (707)
++..+..+...|.+.|++++|.+.|++.. . ++...|..+..++...|++++|+..|++..+ ..|+.. .+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 44555555556666666666666655432 1 4444554555555566666666666666555 444433 455555
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 043060 444 SACNHAGLLDIGRQYFNAMIQDYKISPKL-------QHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD---AAIWTSLLG 512 (707)
Q Consensus 444 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~ 512 (707)
..+...|++++|...|+...+.. +.+. ..|..+...+.+.|++++|++.|++. ...|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 55555566666666655555421 1122 23444555555555555555555553 33443 234444444
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
.+... +...++++..+.+.++..|..+ .....|.+++|...+++..+..
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 44322 2333444444444443333222 2233344578888888777643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-10 Score=124.35 Aligned_cols=179 Identities=10% Similarity=0.026 Sum_probs=158.1
Q ss_pred HHHHHHHHhcC---CCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHH
Q 043060 386 IKAAEQVFDGM---GYKTLASWNAMISGLAMHGKA-DKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFN 460 (707)
Q Consensus 386 ~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 460 (707)
++++...+++. ...+...|..+...|...|++ ++|++.|++..+ ..|+ ...+..+..++...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55666666554 334778899999999999999 999999999998 5666 4589999999999999999999999
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHHc---------CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc--------CChh
Q 043060 461 AMIQDYKISPKLQHYGCMVDLLGRA---------GLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVH--------GRLE 521 (707)
Q Consensus 461 ~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~--------g~~~ 521 (707)
.+.+ ..|+...+..+..+|... |++++|++.+++. ...|+ ...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9874 457788899999999999 9999999999986 55565 88999999999999 9999
Q ss_pred HHHHHHHHHHccCC---CCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 522 LGESVAKHLLELEP---ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 522 ~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+|+..++++++++| .++.+|..++.+|...|++++|.+.+++..+...
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999 9999999999999999999999999999987544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-09 Score=112.02 Aligned_cols=163 Identities=10% Similarity=0.016 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCChHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGE----GLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDY---KISPKLQH 474 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~ 474 (707)
+++.+...|...|++++|++.|++..+. +-.+. ..++..+...+...|++++|...|++..+.. +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 4455555555555555555555554431 10111 1245555556666666666666665554311 11122445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHHccCCCCchhHHHH
Q 043060 475 YGCMVDLLGRAGLFDEAEALLKTM----EM--KPD-AAIWTSLLGACRVHGR---LELGESVAKHLLELEPENPGAYVLL 544 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l 544 (707)
+..+...|.+.|++++|.+.+++. .. .|. ...+..+...+...++ +++|...+++. ...|.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 556666666666666666666653 11 122 2334444444555555 55555555441 1223333455667
Q ss_pred HHHhhhcCChhhHHHHHHHHhh
Q 043060 545 SNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 545 ~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
+..|...|++++|...+++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777666643
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-10 Score=103.25 Aligned_cols=168 Identities=14% Similarity=0.082 Sum_probs=144.8
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLS 444 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 444 (707)
....+..+...|...|++++|.+.|+++.. .+...|..+...+...|++++|+..++++.+. .| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 84 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 345677888899999999999999998854 36778999999999999999999999999884 44 4568888889
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 043060 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 445 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 522 (707)
.+...|++++|.+.++.+.+. .+.+...+..+...|...|++++|.+.++++ ...| +..+|..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999874 3457788889999999999999999999986 3344 47899999999999999999
Q ss_pred HHHHHHHHHccCCCCchh
Q 043060 523 GESVAKHLLELEPENPGA 540 (707)
Q Consensus 523 A~~~~~~~~~~~p~~~~~ 540 (707)
|...++++++..|+++..
T Consensus 163 A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 163 ALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHcCCCchhh
Confidence 999999999998877643
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-10 Score=117.26 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=35.7
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 479 VDLLGRAGLFDEAEALLKTME-MKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
...+...+.+.+|...++... ..|+ ..+|..+...+...|++++|.+.+++++++.|+
T Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 251 KGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 344555666667777777653 3344 678999999999999999999999999988774
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=8.4e-10 Score=114.24 Aligned_cols=306 Identities=11% Similarity=0.039 Sum_probs=217.6
Q ss_pred CCCCCHhhHHHHHHHH--hccCCchHHHHHHHHHHHcC--C--CchhHHHHHHHHHH-----HhcCCHH------HHHHH
Q 043060 228 NFVPNESTVVTVLSAC--AHMGSLELGNWVCSLIEGHG--L--GSNLHVTNALIDMY-----SKCGDLV------KARDL 290 (707)
Q Consensus 228 ~~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~~-----~~~g~~~------~A~~~ 290 (707)
.+.|+...-..+-..| ...+++++|.++.+.+.+.. + ..+...|-.|+..- ....... .....
T Consensus 5 ~~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 84 (378)
T 3q15_A 5 QAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84 (378)
T ss_dssp -CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence 4556665555666666 78899999999999887642 2 33445555555431 1111122 11144
Q ss_pred HHhcC---CC-C-hh---hHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCC----hhhHHhHHHHHhccCCchHHHHHH
Q 043060 291 FESIE---KR-D-VI---SWNVMIGGYTHTSDYKEALMLFRQMLQSNI-EPN----DVTFLSVLPACAYLGALDLGKWIH 357 (707)
Q Consensus 291 ~~~~~---~~-~-~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~ 357 (707)
++.+. .+ + .. .|......+...|++++|+..|++..+... .++ ..++..+...+...|+++.|...+
T Consensus 85 l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 85 LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 44432 22 1 11 233345567889999999999999876421 123 345667778889999999999999
Q ss_pred HHHHHhCCCCC-----cHHHHhHHhhHHHhcCCHHHHHHHHhcCCC-----CC----hHHHHHHHHHHHHcCCHHHHHHH
Q 043060 358 AYIDKNHQKLN-----NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-----KT----LASWNAMISGLAMHGKADKALSL 423 (707)
Q Consensus 358 ~~~~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~ 423 (707)
....+.....+ ...+++.+...|...|++++|.+.|++... .+ ..+++.+...|...|++++|+..
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 98877532211 355788899999999999999999987632 22 24788899999999999999999
Q ss_pred HHHHHH-----CCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC---CChHHHHHHHHHHHHcCC---HHHHH
Q 043060 424 FSRMIG-----EGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS---PKLQHYGCMVDLLGRAGL---FDEAE 492 (707)
Q Consensus 424 ~~~m~~-----~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~---~~~A~ 492 (707)
|++..+ .. +....++..+...+.+.|++++|..+++...+...-. .....+..+...|...|+ +++|+
T Consensus 245 ~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al 323 (378)
T 3q15_A 245 FQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323 (378)
T ss_dssp HHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999887 32 2224578888999999999999999999987753322 223456677777888888 99999
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 043060 493 ALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELE 534 (707)
Q Consensus 493 ~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 534 (707)
..+++.+..|+ ...+..+...|...|++++|...++++++..
T Consensus 324 ~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 324 SYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999765555 5577789999999999999999999988653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-10 Score=127.00 Aligned_cols=163 Identities=17% Similarity=0.182 Sum_probs=143.6
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLS 444 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 444 (707)
+...++.|...|.+.|++++|++.|++.. ..+..+|+.+...|.+.|++++|++.|++.++ +.|+.. .|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 67789999999999999999999999763 45678999999999999999999999999998 677754 8899999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 043060 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 445 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 522 (707)
++...|++++|.+.|++..+. -+-+...|..+..+|.+.|++++|++.|++. .+.|+ ...|..++..+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999998863 2336788999999999999999999999986 66776 8899999999999999999
Q ss_pred HHHHHHHHHccCC
Q 043060 523 GESVAKHLLELEP 535 (707)
Q Consensus 523 A~~~~~~~~~~~p 535 (707)
|.+.+++++++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 9999999987644
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-09 Score=106.30 Aligned_cols=203 Identities=11% Similarity=-0.016 Sum_probs=119.3
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCC--C-C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HhH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY--K-T---LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD----DIT 438 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t 438 (707)
+...+..+...+.+.|++++|...|+++.. | + ...|..+..+|.+.|++++|+..|++.++ ..|+ ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ--IYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HCCCCchhHHH
Confidence 444555555555566666666666655432 1 2 34455555555666666666666666555 2231 123
Q ss_pred HHHHHHHHhc--------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 043060 439 FVGVLSACNH--------AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSL 510 (707)
Q Consensus 439 ~~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 510 (707)
+..+..++.. .|++++|...|+.+.+.+.- +......+.......+.+ ...+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 3444444444 55555555555555543211 111111111100000000 1124667
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHHHhhhc----------CChhhHHHHHHHHhhCCCccCCcccE
Q 043060 511 LGACRVHGRLELGESVAKHLLELEPEN---PGAYVLLSNMYAGA----------GRWDDVATIRTRLNDKGMKKVPGCSS 577 (707)
Q Consensus 511 l~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~ 577 (707)
...+...|++++|+..++++++..|++ +.++..++.+|... |++++|...++++.+...
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-------- 226 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-------- 226 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC--------
Confidence 888999999999999999999999984 45889999999877 999999999999987544
Q ss_pred EeECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHH
Q 043060 578 IEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEK 613 (707)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 613 (707)
.+|...+....+.++...+.+
T Consensus 227 ---------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ---------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ---------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CChHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666553
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.7e-10 Score=110.48 Aligned_cols=222 Identities=15% Similarity=0.168 Sum_probs=159.3
Q ss_pred hccCCchHHHHHHHHHHHh-----CCC-CCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC--------CC---ChHHHHHH
Q 043060 345 AYLGALDLGKWIHAYIDKN-----HQK-LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG--------YK---TLASWNAM 407 (707)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~-----~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~---~~~~~~~l 407 (707)
...|+++.|...++..++. +.. +....++..+...|...|++++|...|+++. .. ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4568888888888877663 111 2256788899999999999999999998763 11 34578889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhc-----CCCC-ChHH
Q 043060 408 ISGLAMHGKADKALSLFSRMIGE------GLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDY-----KISP-KLQH 474 (707)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~ 474 (707)
...|...|++++|+..|++..+. .-.|+ ..++..+...+...|++++|..+|+++.+.. ...| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998873 11233 3478888889999999999999999887641 1122 3567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----------CCCCC-HHHHHHHHHHHHhcCChh------HHHHHHHHHHccCCCC
Q 043060 475 YGCMVDLLGRAGLFDEAEALLKTM----------EMKPD-AAIWTSLLGACRVHGRLE------LGESVAKHLLELEPEN 537 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~----------~~~p~-~~~~~~ll~~~~~~g~~~------~A~~~~~~~~~~~p~~ 537 (707)
+..+..+|.+.|++++|.+.+++. ...+. ...|..+.......+... .+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999875 12333 445555554444444333 2333333332334556
Q ss_pred chhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 538 PGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
+.++..++.+|...|++++|.+++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67899999999999999999999998875
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-10 Score=101.45 Aligned_cols=140 Identities=11% Similarity=0.054 Sum_probs=100.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH
Q 043060 410 GLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF 488 (707)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 488 (707)
.+...|++++|+..+++... ..|+.. .+..+...|...|++++|.+.|+...+. .+-+...|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 34445666666666666554 334332 4555666677777777777777766652 223566777788888888888
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHH-HHHHHccCCCCchhHHHHHHHhhhcCC
Q 043060 489 DEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESV-AKHLLELEPENPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 489 ~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 553 (707)
++|+..|++. .+.|+ ..+|..+...+.+.|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888775 55665 78899999999999998776654 689999999999999999988888775
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.09 E-value=6.7e-09 Score=98.61 Aligned_cols=182 Identities=11% Similarity=-0.017 Sum_probs=111.7
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCC--C-C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh----H
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY--K-T---LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI----T 438 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 438 (707)
+...+..+...+.+.|++++|...|+++.. | + ...+..+..+|.+.|++++|+..|+++.+ ..|+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHH
Confidence 344555566667777777777777776532 2 1 23566667777777777777777777776 344432 2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHH----------
Q 043060 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAI---------- 506 (707)
Q Consensus 439 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~---------- 506 (707)
+..+..++...|.. .+ ..|..+...+...|++++|...|+++ ...|+ ...
T Consensus 81 ~~~~g~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~ 142 (225)
T 2yhc_A 81 MYMRGLTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL 142 (225)
T ss_dssp HHHHHHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH
Confidence 33333333321100 00 00001111112234455555555443 22233 111
Q ss_pred -------HHHHHHHHHhcCChhHHHHHHHHHHccCCCCc---hhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 507 -------WTSLLGACRVHGRLELGESVAKHLLELEPENP---GAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 507 -------~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
...+...+...|+++.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 143 KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 13456678899999999999999999999876 57999999999999999999999999887764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-08 Score=103.25 Aligned_cols=165 Identities=14% Similarity=0.034 Sum_probs=106.7
Q ss_pred HHHhHHhhHHHhcCCHHHHHHHHhcCC----CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHH-
Q 043060 371 SLWTSLIDMYAKCGNIKAAEQVFDGMG----YK----TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFV- 440 (707)
Q Consensus 371 ~~~~~li~~y~~~g~~~~A~~~~~~~~----~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~- 440 (707)
..+..+...|...|++++|...+++.. .. ...+|..+...+...|++++|...+++.....-.++. ..+.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 345556677777777777777776541 11 1245667777788888888888888887653112111 1111
Q ss_pred ----HHHHHHhccCCHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCH-HH
Q 043060 441 ----GVLSACNHAGLLDIGRQYFNAMIQDYKISP--KLQHYGCMVDLLGRAGLFDEAEALLKTM-------EMKPDA-AI 506 (707)
Q Consensus 441 ----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~ 506 (707)
..+..+...|++++|...++.........+ ....+..+...+...|++++|.+.+++. +..++. .+
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 295 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 295 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 223346678888888888887754211011 1224567778888889999988888775 111122 36
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 043060 507 WTSLLGACRVHGRLELGESVAKHLLELEP 535 (707)
Q Consensus 507 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 535 (707)
+..+..++...|+.++|...+++++++.+
T Consensus 296 ~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 296 LLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 66677788889999999999998887653
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.9e-09 Score=105.62 Aligned_cols=211 Identities=12% Similarity=-0.019 Sum_probs=121.0
Q ss_pred CHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHH
Q 043060 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362 (707)
Q Consensus 283 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 362 (707)
++++|...|++. ...|...|++++|++.|.+..+... ..|+.
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~~------------ 73 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQK---------------KAGNE------------ 73 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHH---------------HTTCH------------
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHH---------------HhCCH------------
Confidence 477777666553 5667777777777777776654210 00000
Q ss_pred hCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC-----CC----hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCC
Q 043060 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-----KT----LASWNAMISGLAMH-GKADKALSLFSRMIGEGL 432 (707)
Q Consensus 363 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~ 432 (707)
.....+++.+..+|.+.|++++|...|++... .+ ..+|+.+...|... |++++|+..|++..+ +
T Consensus 74 ----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~ 147 (292)
T 1qqe_A 74 ----DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--W 147 (292)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--H
T ss_pred ----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--H
Confidence 00133455666666666666666666554421 11 23566677777775 777777777777765 2
Q ss_pred CCC-------HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 043060 433 QPD-------DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL-----QHYGCMVDLLGRAGLFDEAEALLKTM-E 499 (707)
Q Consensus 433 ~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~ 499 (707)
.|+ ..++..+...+...|++++|...|+.+.+...-.+.. ..|..+..+|...|++++|...+++. .
T Consensus 148 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 221 2356666777777777777777777776532111111 14556666777777777777777775 4
Q ss_pred CCCCH------HHHHHHHHHHH--hcCChhHHHHHHHHHHccCCCC
Q 043060 500 MKPDA------AIWTSLLGACR--VHGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 500 ~~p~~------~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~p~~ 537 (707)
+.|+. ..+..++.++. ..+++++|...|+++.+++|.+
T Consensus 228 l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 44431 12344455553 3456777777777776666644
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.06 E-value=7.5e-08 Score=93.60 Aligned_cols=176 Identities=9% Similarity=0.010 Sum_probs=110.2
Q ss_pred HHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 389 AEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 389 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
|...|++.. .++..++..+..++...|++++|++++.+.+..|-.++. ..+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455555443 234445556666777777777777777776654332233 3566666777777777777777777754
Q ss_pred hcCCCC-----ChHHHHHHHHH--HHHcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcc-
Q 043060 465 DYKISP-----KLQHYGCMVDL--LGRAG--LFDEAEALLKTM-EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLEL- 533 (707)
Q Consensus 465 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~- 533 (707)
. .| +..+...|..+ ....| +..+|..+|+++ ...|+..+-..++.++...|++++|++.++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 34 23444444444 22333 777788888776 33354333334444677788888888888777665
Q ss_pred ---------CCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 534 ---------EPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 534 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+|+++.++..++.+....|+ +|.++++++.+..+
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 47777777777777777776 77788887776544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-09 Score=107.67 Aligned_cols=188 Identities=7% Similarity=-0.017 Sum_probs=139.2
Q ss_pred hhHHHhcCCHHHHHHHHhcCCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------HhHHH
Q 043060 377 IDMYAKCGNIKAAEQVFDGMGY-----KT----LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-------DITFV 440 (707)
Q Consensus 377 i~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~t~~ 440 (707)
+..|...|++++|.+.|++... .+ ..+|+.+...|...|++++|+..|++..+ +.|+ ..++.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~~~~g~~~~~a~~~~ 121 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ--IFTHRGQFRRGANFKF 121 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHH
Confidence 5567788999999888876521 12 45889999999999999999999999876 2221 24788
Q ss_pred HHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---H-----HH
Q 043060 441 GVLSACNHA-GLLDIGRQYFNAMIQDYKISPK----LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD---A-----AI 506 (707)
Q Consensus 441 ~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~ 506 (707)
.+...|... |++++|...|++..+...-..+ ...+..+...|.+.|++++|++.|++. ...|+ . ..
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 888899996 9999999999988764211111 356888999999999999999999986 33332 1 15
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh-----HHHHHHHhh--hcCChhhHHHHHHHHhh
Q 043060 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGA-----YVLLSNMYA--GAGRWDDVATIRTRLND 566 (707)
Q Consensus 507 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m~~ 566 (707)
|..++..+...|+++.|...++++++++|..... +..++..|. ..+++++|.+.|+++.+
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 7788888999999999999999999999975543 345566664 56778888887766543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.4e-09 Score=116.03 Aligned_cols=168 Identities=11% Similarity=-0.039 Sum_probs=140.1
Q ss_pred HhcCCHHHHHHHHhcCC-----------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhc
Q 043060 381 AKCGNIKAAEQVFDGMG-----------YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNH 448 (707)
Q Consensus 381 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 448 (707)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+ ..|+. ..+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 67889999999888765 34667888889999999999999999999988 56654 478888888999
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 043060 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESV 526 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~ 526 (707)
.|++++|...|+++.+. .+.+...|..+..+|.+.|++++ ++.|++. ...|+ ...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998863 23366788889999999999999 9888886 55665 78899999999999999999999
Q ss_pred HHHHHccCCCCchhHHHHHHHhhhcCC
Q 043060 527 AKHLLELEPENPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 527 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 553 (707)
++++++++|++..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999988666
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.02 E-value=5.3e-09 Score=102.82 Aligned_cols=165 Identities=15% Similarity=0.128 Sum_probs=99.5
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCCC----------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------C
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY----------K-TLASWNAMISGLAMHGKADKALSLFSRMIGE------G 431 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 431 (707)
...++..+...|...|++++|.+.|++... + ...+|..+...|...|++++|+..|+++.+. +
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344566666666677777777666665421 1 2346677777777778888888877777663 1
Q ss_pred CCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhc------CCCC-ChHHHHHHHHHHHHcC------CHHHHHHHHHh
Q 043060 432 LQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDY------KISP-KLQHYGCMVDLLGRAG------LFDEAEALLKT 497 (707)
Q Consensus 432 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p-~~~~~~~li~~~~~~g------~~~~A~~~~~~ 497 (707)
-.|+. .++..+...+...|++++|..+++.+.+.. ...+ ....|..+...+...+ .+.++...++.
T Consensus 164 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (283)
T 3edt_B 164 DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------C
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Confidence 13332 366777778888888888888888776531 1122 2233333333333322 24444555555
Q ss_pred CC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 043060 498 ME-MKPD-AAIWTSLLGACRVHGRLELGESVAKHLLEL 533 (707)
Q Consensus 498 ~~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 533 (707)
.. ..|+ ..++..+...+...|++++|...++++++.
T Consensus 244 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 43 2233 667888999999999999999999998875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.00 E-value=5.6e-09 Score=89.46 Aligned_cols=125 Identities=20% Similarity=0.289 Sum_probs=78.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 043060 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGR 519 (707)
Q Consensus 442 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 519 (707)
+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|.+.++++ ...| +...|..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 333344444444444444444331 1123344445555555556666666655554 2223 35667777777778888
Q ss_pred hhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 520 LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 520 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
+++|...++++++..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888777788888888888888888888887776543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.2e-09 Score=103.47 Aligned_cols=175 Identities=14% Similarity=0.012 Sum_probs=139.4
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 386 IKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 386 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
.+...+.+......+...+..+...+.+.|++++|+..|++..+ ..|+.. .+..+...+...|++++|...++.+..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 33444455554445556777788888899999999999999988 567554 778888899999999999999998865
Q ss_pred hcCCCCChHHHHHH-HHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC--ch
Q 043060 465 DYKISPKLQHYGCM-VDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN--PG 539 (707)
Q Consensus 465 ~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~ 539 (707)
. .|+....... ...+.+.|+.++|.+.+++. ...|+ ...+..+...+...|++++|...++++++.+|++ ..
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 3 3554433332 33466788888898888875 45565 8899999999999999999999999999999987 88
Q ss_pred hHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 540 AYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 540 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
++..|+.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999999999887754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-08 Score=98.75 Aligned_cols=204 Identities=12% Similarity=0.046 Sum_probs=148.4
Q ss_pred ChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCc-HHHHhHHhhHHHhcCCHHHHHHHHhcCCC--C----ChHHHH
Q 043060 333 NDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNN-VSLWTSLIDMYAKCGNIKAAEQVFDGMGY--K----TLASWN 405 (707)
Q Consensus 333 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~~~~ 405 (707)
+...+......+...|+++.|...+..+++..+..+. ..++..+..+|.+.|++++|...|++... | ....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4456666777888999999999999999998766311 67888999999999999999999998742 1 234677
Q ss_pred HHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 043060 406 AMISGLAM--------HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGC 477 (707)
Q Consensus 406 ~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 477 (707)
.+..++.. .|++++|+..|++.++ ..|+..... .+...+..+... ....+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~-------------~a~~~~~~~~~~-----~~~~~~~ 153 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVD-------------DATQKIRELRAK-----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHH-------------HHHHHHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHH-------------HHHHHHHHHHHH-----HHHHHHH
Confidence 88888888 9999999999999998 556543211 111111111110 1123556
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHHHccCCCCch---
Q 043060 478 MVDLLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLGACRVH----------GRLELGESVAKHLLELEPENPG--- 539 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~--- 539 (707)
+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 788899999999999999886 33343 45777788888766 8899999999999999998864
Q ss_pred hHHHHHHHhhhcCChhh
Q 043060 540 AYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 540 ~~~~l~~~~~~~g~~~~ 556 (707)
+...+..++.+.|++++
T Consensus 234 a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 234 AEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34455555555554444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.1e-09 Score=94.68 Aligned_cols=124 Identities=11% Similarity=-0.014 Sum_probs=103.3
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 043060 442 VLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHG 518 (707)
Q Consensus 442 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g 518 (707)
|...+...|++++|++.++.... ..| +...+-.+..+|.+.|++++|++.|++. .+.|+ ..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34456677899999999988753 333 3345667899999999999999999986 66676 889999999999999
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHH-HHHHhhCC
Q 043060 519 RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATI-RTRLNDKG 568 (707)
Q Consensus 519 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~~ 568 (707)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+..
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999987776 47776643
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.4e-08 Score=84.43 Aligned_cols=131 Identities=18% Similarity=0.289 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 482 (707)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677777888888888888888887732 224456777777888888888888888888763 234566777888888
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 043060 483 GRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 483 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
.+.|++++|.+.++++ ...| +..+|..++..+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8899999999888876 3334 4778888899999999999999999999988875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-07 Score=91.14 Aligned_cols=241 Identities=11% Similarity=0.024 Sum_probs=164.2
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHH
Q 043060 278 YSKCGDLVKARDLFESIEKRDV-ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356 (707)
Q Consensus 278 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 356 (707)
..-.|.+..++.-...+...+. ..-.-+..+|...|+++.. ..-.|....+..+. .+...+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc----HHHH
Confidence 4456777777776665543322 2222344677777766531 11223322322222 233322 4556
Q ss_pred HHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043060 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-----KTLASWNAMISGLAMHGKADKALSLFSRMIGEG 431 (707)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 431 (707)
++..+..+.. +......+..+|...|++++|++++.+... .+...+-.++..+.+.|+.+.|.+.+++|.+
T Consensus 89 l~~l~~~~~~--~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~-- 164 (310)
T 3mv2_B 89 LENLLKDKQN--SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN-- 164 (310)
T ss_dssp HHHTTTTSCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHhcCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 6666555433 455556888999999999999999988622 3556788889999999999999999999988
Q ss_pred CCC-----CHhHHHHHHHHH--hccC--CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-
Q 043060 432 LQP-----DDITFVGVLSAC--NHAG--LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EM- 500 (707)
Q Consensus 432 ~~p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~- 500 (707)
..| +..+...+..++ ...| ++++|..+|+++.+. .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 678 356666676663 3334 899999999998753 355334444555899999999999999865 21
Q ss_pred ---------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 043060 501 ---------KPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541 (707)
Q Consensus 501 ---------~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 541 (707)
.|+ +.+...++......|+ .|.++++++.+..|++|.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 255 6777677766667786 88999999999999987544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.90 E-value=7.4e-09 Score=94.00 Aligned_cols=77 Identities=14% Similarity=0.080 Sum_probs=62.7
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC--chhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 490 EAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN--PGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 490 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
+|++.+++. ...|+ ...+..+...+...|++++|...++++++.+|+. +.++..++.+|...|+.++|...+++..
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 355555554 34565 7888889999999999999999999999999864 5689999999999999999999888765
Q ss_pred h
Q 043060 566 D 566 (707)
Q Consensus 566 ~ 566 (707)
.
T Consensus 172 ~ 172 (176)
T 2r5s_A 172 Y 172 (176)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-08 Score=111.85 Aligned_cols=159 Identities=11% Similarity=0.044 Sum_probs=126.2
Q ss_pred cCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHH
Q 043060 383 CGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQY 458 (707)
Q Consensus 383 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 458 (707)
.|++++|.+.|++... .+...|..+...|.+.|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998753 3677899999999999999999999999998 5665 45888899999999999999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---CChhHHHHHHHHHHcc
Q 043060 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVH---GRLELGESVAKHLLEL 533 (707)
Q Consensus 459 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~ 533 (707)
+++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...|+ ...+..+...+... |+.++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999874 3346788999999999999999999999986 44554 78899999999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 043060 534 EPENPGAYVLLS 545 (707)
Q Consensus 534 ~p~~~~~~~~l~ 545 (707)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988888776
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.88 E-value=9e-08 Score=89.71 Aligned_cols=172 Identities=10% Similarity=-0.064 Sum_probs=132.6
Q ss_pred HHHHHhcCC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC----CHHHHHHHHHHhH
Q 043060 389 AEQVFDGMG-YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG----LLDIGRQYFNAMI 463 (707)
Q Consensus 389 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 463 (707)
|.+.|++.. ..++.++..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|..+|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344444332 3466677777777777888888888888887754 45566666666776 6 7888888888886
Q ss_pred HhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHH
Q 043060 464 QDYKISPKLQHYGCMVDLLGR----AGLFDEAEALLKTM-EMKPD---AAIWTSLLGACRV----HGRLELGESVAKHLL 531 (707)
Q Consensus 464 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~g~~~~A~~~~~~~~ 531 (707)
+. .+...+..|..+|.. .+++++|++.|++. ...|+ +..+..|...|.. .+++++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 53 356677778888876 78999999999886 44443 7888888888888 789999999999999
Q ss_pred ccCCCCchhHHHHHHHhhhc-C-----ChhhHHHHHHHHhhCCC
Q 043060 532 ELEPENPGAYVLLSNMYAGA-G-----RWDDVATIRTRLNDKGM 569 (707)
Q Consensus 532 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 569 (707)
+. |.++.++..|+.+|... | ++++|...+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66778999999999764 3 89999999999988775
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.4e-08 Score=110.18 Aligned_cols=189 Identities=12% Similarity=0.036 Sum_probs=146.4
Q ss_pred hccCCchHHHHHHHHHH--------HhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHH
Q 043060 345 AYLGALDLGKWIHAYID--------KNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAM 413 (707)
Q Consensus 345 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 413 (707)
...|++++|.+.++.+. +..+. +...+..+...|.+.|++++|.+.|+++. ..+...|..+...|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE--SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT--CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc--chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 56777788888887777 44333 67788889999999999999999998774 4577899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHH
Q 043060 414 HGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAE 492 (707)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 492 (707)
.|++++|+..|++..+ ..|+. ..+..+..++...|++++ .+.|+++.+. .+.+...|..+..+|.+.|++++|+
T Consensus 480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998 66755 478888899999999999 9999998863 3346778999999999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCC-----hhHHHHHHHHHHccCCCCchh
Q 043060 493 ALLKTM-EMKPD-AAIWTSLLGACRVHGR-----LELGESVAKHLLELEPENPGA 540 (707)
Q Consensus 493 ~~~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~ 540 (707)
+.|++. ...|+ ...|..+..++...++ .+...++.+.+.++.+.++..
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 999997 67787 6788888888766555 233344444444454444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.7e-08 Score=105.33 Aligned_cols=145 Identities=11% Similarity=0.009 Sum_probs=81.7
Q ss_pred CCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHH
Q 043060 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLF 424 (707)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 424 (707)
|++++|...++.+.+..+. +...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|++.|
T Consensus 3 g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5566666666666665544 56666667777777777777777776543 234556666677777777777777777
Q ss_pred HHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc---CCHHHHHHHHHhC
Q 043060 425 SRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA---GLFDEAEALLKTM 498 (707)
Q Consensus 425 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 498 (707)
++..+ ..|+ ...+..+..++...|++++|.+.|++..+. .+.+...+..+..+|... |+.++|.+.+++.
T Consensus 81 ~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 77666 3444 336666666677777777777777766652 223455666666667666 7777777766664
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-08 Score=85.28 Aligned_cols=108 Identities=11% Similarity=0.023 Sum_probs=65.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACR 515 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 515 (707)
.+......+.+.|++++|.+.|++.++. .+.+...|..+..+|.+.|++++|++.+++. .+.|+ ...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4444555555666666666666555542 2234555556666666666666666666654 33444 566666777777
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
..|++++|++.++++++++|+++.++..|.++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 77777777777777777777776666665544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.1e-08 Score=91.10 Aligned_cols=126 Identities=10% Similarity=0.031 Sum_probs=96.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc
Q 043060 407 MISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485 (707)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 485 (707)
+...|.+.|++++|+..|++.++ ..|+. ..+..+..++...|++++|...|+++.+. -+.+...|..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 88888999999999999999988 56654 47888888999999999999999998863 334677888888888766
Q ss_pred CC--HHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 043060 486 GL--FDEAEALLKTMEMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 486 g~--~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 537 (707)
|+ .+++...++... .|+ ...|..+..++...|++++|+..+++++++.|++
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 54 344556665552 344 3345556667778899999999999999999963
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-08 Score=88.82 Aligned_cols=103 Identities=7% Similarity=-0.034 Sum_probs=91.2
Q ss_pred CCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHH
Q 043060 467 KISP-KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL 543 (707)
Q Consensus 467 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 543 (707)
.+.| +...+..+...+.+.|++++|++.|++. ...|+ ...|..+..++...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3445 4456777888899999999999999986 55665 8899999999999999999999999999999999999999
Q ss_pred HHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 544 LSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 544 l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
++.+|.+.|++++|.+.|++..+...
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999987543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.9e-08 Score=92.83 Aligned_cols=161 Identities=13% Similarity=0.055 Sum_probs=121.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHH----------------HHHHHhccCCHHHHHHHHHHhHHhc
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVG----------------VLSACNHAGLLDIGRQYFNAMIQDY 466 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~----------------ll~a~~~~g~~~~a~~~~~~~~~~~ 466 (707)
+-.....+...|++++|+..|++..+ ..|+.. .+.. +..++...|++++|...|+...+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 33344556677888888888888877 556544 4555 788899999999999999999873
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC--hhHHHHHHHHHHccCCCCchhHH
Q 043060 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGR--LELGESVAKHLLELEPENPGAYV 542 (707)
Q Consensus 467 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~ 542 (707)
.+.+...+..+..+|...|++++|++.|++. ...|+ ..+|..+...+...|+ .+.+...++++....| ....+.
T Consensus 84 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~ 161 (208)
T 3urz_A 84 -APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARY 161 (208)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHH
Confidence 3347788999999999999999999999996 56676 8889999988876654 4455566666554333 223566
Q ss_pred HHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 543 LLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 543 ~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.++.++...|++++|+..+++..+..+
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 778888999999999999999987544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=9.1e-09 Score=90.24 Aligned_cols=99 Identities=9% Similarity=0.088 Sum_probs=87.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4556777888899999999999999886 4455 4889999999999999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHhhCCC
Q 043060 549 AGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~~ 569 (707)
...|++++|.+.+++..+...
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHHCc
Confidence 999999999999999877543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.8e-07 Score=88.96 Aligned_cols=209 Identities=14% Similarity=0.172 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcC--CHHHHHHHHhcCC---CCChHHHHHHHHHH----HHc---CCHHH
Q 043060 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG--NIKAAEQVFDGMG---YKTLASWNAMISGL----AMH---GKADK 419 (707)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~~ 419 (707)
+|..+...++..++. +..+|+.-...+...| +++++++.++.+. .++..+|+.-...+ ... +++++
T Consensus 51 ~aL~~t~~~L~~nP~--~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 51 RALHITELGINELAS--HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHCTT--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHCcH--HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 444444444444444 4444555555555555 5666666555542 23444555443333 333 56666
Q ss_pred HHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHH--HHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC------HHH
Q 043060 420 ALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLD--IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL------FDE 490 (707)
Q Consensus 420 A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~ 490 (707)
++.+++++.+ ..|.. .++..-.....+.|.++ +++++++.+.+. -+-+...|+.-..++.+.|+ +++
T Consensus 129 EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 129 EFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 6666666666 34433 35554444555555555 666666666652 22345555555555555554 667
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-hHHHHHHHHHHccC---CCCchhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 491 AEALLKTM-EMKP-DAAIWTSLLGACRVHGRL-ELGESVAKHLLELE---PENPGAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 491 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
+++.++++ ...| |...|+-+...+.+.|+. +.....++++++++ |.++.++..++++|.+.|+.++|.++++.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 77766664 3444 377777777777776663 33455666666665 667777777777777777778888777777
Q ss_pred hh
Q 043060 565 ND 566 (707)
Q Consensus 565 ~~ 566 (707)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.76 E-value=3.8e-06 Score=89.33 Aligned_cols=366 Identities=10% Similarity=-0.019 Sum_probs=172.6
Q ss_pred cCC-CchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC-hhHH
Q 043060 107 LSS-SPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE-LESA 184 (707)
Q Consensus 107 ~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A 184 (707)
+.| +...|..+|+.+... -|. ++++.+.++|+..+.. .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377788888877753 233 8889999999988874 4688888888887776653 3444
Q ss_pred HHHHhcCC------CCCeehHHHHHHHHH----hCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHh---ccCCchH
Q 043060 185 RLVFNKSS------LRDAVSYTALITGYA----SRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACA---HMGSLEL 251 (707)
Q Consensus 185 ~~~f~~~~------~~~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~---~~g~~~~ 251 (707)
..+|+... ..+...|...+..+. .+++.+.+.++|++.+. +++.. +..+-..|. ...+...
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~----~P~~~--~~~lw~~Y~~fE~~~~~~~ 141 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ----TPMGS--LSELWKDFENFELELNKIT 141 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT----SCCTT--HHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh----Chhhh--HHHHHHHHHHHHHHhcccc
Confidence 55555322 225566776666543 23556677777777742 22111 111111111 1111111
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHhcC--C-----HHHHHH
Q 043060 252 GNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIE----KRDVISWNVMIGGYTHTS--D-----YKEALM 320 (707)
Q Consensus 252 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g--~-----~~~A~~ 320 (707)
+..+..... +.+..|+.+++.+. ..+...|...+.--...+ - .+.+..
T Consensus 142 ~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~ 200 (493)
T 2uy1_A 142 GKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHF 200 (493)
T ss_dssp HHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHH
Confidence 222111110 12222333322221 113334554444322221 0 234556
Q ss_pred HHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHH-HHHHhcCC--
Q 043060 321 LFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA-EQVFDGMG-- 397 (707)
Q Consensus 321 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~~~-- 397 (707)
+|++++... +.+...|...+.-+...|+.+.|..+++..++. +. +...+.. |+...+.++. ..+.+...
T Consensus 201 ~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~--~~~l~~~----y~~~~e~~~~~~~l~~~~~~~ 272 (493)
T 2uy1_A 201 IHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD--GMFLSLY----YGLVMDEEAVYGDLKRKYSMG 272 (493)
T ss_dssp HHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC--SSHHHHH----HHHHTTCTHHHHHHHHHTC--
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC--cHHHHHH----HHhhcchhHHHHHHHHHHHhh
Confidence 777766542 233455555555666677777777777777777 33 3333322 2221111111 11111100
Q ss_pred ----------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh-ccCCHHHHHHHHHHhHHhc
Q 043060 398 ----------YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACN-HAGLLDIGRQYFNAMIQDY 466 (707)
Q Consensus 398 ----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~ 466 (707)
......|-..+..+.+.++.+.|..+|++. .. ...+...|......-. ..++.+.|..+|+...+.+
T Consensus 273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 001134555555555555666666666666 21 1112222221111111 1224666666666665543
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043060 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLL 531 (707)
Q Consensus 467 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 531 (707)
+- +...+...++...+.|+.+.|..+|+++. .....|...+..-..+|+.+.+..++++..
T Consensus 351 ~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 351 PD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 21 22334445555555666666666666652 134555555555555555555555555444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.75 E-value=9.5e-07 Score=87.43 Aligned_cols=161 Identities=7% Similarity=-0.034 Sum_probs=122.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHh----HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHH
Q 043060 406 AMISGLAMHGKADKALSLFSRMIGEGL-QPDDI----TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK----LQHYG 476 (707)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 476 (707)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...|+.+.+...-.++ ...++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887321 22211 2334666677788999999999998863222233 23688
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCC-------CC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC------chhH
Q 043060 477 CMVDLLGRAGLFDEAEALLKTME-------MK-PD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN------PGAY 541 (707)
Q Consensus 477 ~li~~~~~~g~~~~A~~~~~~~~-------~~-p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 541 (707)
.+...|...|++++|++.++++- .. +. ..++..++..|...|++++|...+++++++.+.. +.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999888751 11 22 4588899999999999999999999999865332 5789
Q ss_pred HHHHHHhhhcCC-hhhHHHHHHHHhh
Q 043060 542 VLLSNMYAGAGR-WDDVATIRTRLND 566 (707)
Q Consensus 542 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 566 (707)
..++.+|.+.|+ +++|.+.+++..+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.2e-08 Score=82.63 Aligned_cols=101 Identities=10% Similarity=0.105 Sum_probs=90.8
Q ss_pred CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 043060 468 ISPK-LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544 (707)
Q Consensus 468 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 544 (707)
+.|+ ...+......|.+.|++++|++.|++. ...|+ ..+|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3443 356778899999999999999999986 55665 88999999999999999999999999999999999999999
Q ss_pred HHHhhhcCChhhHHHHHHHHhhCC
Q 043060 545 SNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 545 ~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
+.+|...|++++|.+.+++..+..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999998754
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-07 Score=93.63 Aligned_cols=180 Identities=12% Similarity=0.069 Sum_probs=119.7
Q ss_pred hhHHHhcCCHHHHHHHHhcCCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HhHHHHH
Q 043060 377 IDMYAKCGNIKAAEQVFDGMGY-----KT----LASWNAMISGLAMHGKADKALSLFSRMIGEGL---QPD--DITFVGV 442 (707)
Q Consensus 377 i~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~l 442 (707)
...|...|++++|...|.+... .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555666666655554321 11 23677777788888888888888887765210 121 2366777
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHH
Q 043060 443 LSACNHAGLLDIGRQYFNAMIQDYKISPK----LQHYGCMVDLLGRAGLFDEAEALLKTM-EM---KPD----AAIWTSL 510 (707)
Q Consensus 443 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l 510 (707)
...|.. |++++|...|++..+.+.-..+ ...+..+...|.+.|++++|++.|++. .+ .++ ...+..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 778877 9999999988887653211111 356778889999999999999999875 11 112 2366777
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCchh-----HHHHHHHhhhcCChhhHHH
Q 043060 511 LGACRVHGRLELGESVAKHLLELEPENPGA-----YVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 511 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 559 (707)
+..+...|++++|...+++++ +.|..... ...++..+ ..|+.+...+
T Consensus 202 g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 778888899999999999999 88865432 34455555 5677665554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-07 Score=88.27 Aligned_cols=125 Identities=12% Similarity=-0.022 Sum_probs=97.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 043060 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVH 517 (707)
Q Consensus 440 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~ 517 (707)
..+...+...|++++|...|+... .|+...|..+...|.+.|++++|++.+++. ...|+ ...|..+...+...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 344555666677777777776542 356667777777777778888877777765 33444 77888888889999
Q ss_pred CChhHHHHHHHHHHccCCCCc----------------hhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 518 GRLELGESVAKHLLELEPENP----------------GAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 518 g~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
|++++|...++++++..|.+. .++..++.+|.+.|++++|.+.+++..+...
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999999888776 8899999999999999999999999887654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.73 E-value=9.9e-08 Score=82.93 Aligned_cols=98 Identities=12% Similarity=0.034 Sum_probs=85.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+..++...|++++|...++++++++|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3455666778888999999999999886 44554 888999999999999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHhhCC
Q 043060 549 AGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~ 568 (707)
...|++++|.+.+++..+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999987653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.73 E-value=2.8e-07 Score=87.23 Aligned_cols=185 Identities=13% Similarity=-0.011 Sum_probs=130.5
Q ss_pred hhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCC-cHHHHhHHhhHHHhcCCHHHHHHHHhcCCC--C-Ch---HHHHH
Q 043060 334 DVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLN-NVSLWTSLIDMYAKCGNIKAAEQVFDGMGY--K-TL---ASWNA 406 (707)
Q Consensus 334 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~---~~~~~ 406 (707)
...+......+...|+++.|...++.+++..+..+ ....+..+..+|.+.|++++|...|++... | +. .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566778899999999999999999876542 246788899999999999999999998732 2 22 24555
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCHhH-HHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 043060 407 MISGLAM------------------HGKADKALSLFSRMIGEGLQPDDIT-FVGVLSACNHAGLLDIGRQYFNAMIQDYK 467 (707)
Q Consensus 407 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 467 (707)
+..++.. .|++++|+..|+++++ ..|+... ...... . ..+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----l------~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----L------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----H------HHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----H------HHHHHHH-----
Confidence 5555554 4677788888888777 4565542 111100 0 0000111
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 043060 468 ISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG 539 (707)
Q Consensus 468 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 539 (707)
......+...|.+.|++++|+..|+++ ...|+ ...+..+..++.+.|+.++|.+.++.+....|++..
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 011234677899999999999999986 34454 357888999999999999999999999988887643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.1e-08 Score=98.09 Aligned_cols=171 Identities=6% Similarity=-0.065 Sum_probs=134.6
Q ss_pred cCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHhccCCHHHHHH
Q 043060 383 CGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE----GLQPD-DITFVGVLSACNHAGLLDIGRQ 457 (707)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 457 (707)
.+++++|...|.+ ....|...|++++|+..|.+..+. |-.+. ..+|..+...|...|++++|..
T Consensus 29 ~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4788888888765 366788999999999999988763 11111 2378888889999999999999
Q ss_pred HHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC---CC----HHHHHHHHHHHHhcCChhHHHH
Q 043060 458 YFNAMIQDYKISPK----LQHYGCMVDLLGRAGLFDEAEALLKTM-EMK---PD----AAIWTSLLGACRVHGRLELGES 525 (707)
Q Consensus 458 ~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~---p~----~~~~~~ll~~~~~~g~~~~A~~ 525 (707)
.|+...+-+.-..+ ..++..+..+|.+ |++++|++.+++. .+. .+ ..++..+...+...|++++|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99987654321111 3577888899988 9999999999885 111 11 4678899999999999999999
Q ss_pred HHHHHHccCCCCc------hhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 526 VAKHLLELEPENP------GAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 526 ~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
.+++++++.|.+. ..+..++.++...|++++|...+++..
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999865443 367778888999999999999999987
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.1e-07 Score=90.12 Aligned_cols=165 Identities=7% Similarity=-0.025 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCC--h
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-----ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKI--SPK--L 472 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~ 472 (707)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++...+...- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677788899999999999888874222111 12334555667888999999999887653111 111 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC------C
Q 043060 473 QHYGCMVDLLGRAGLFDEAEALLKTM----EMKPD-----AAIWTSLLGACRVHGRLELGESVAKHLLELEPE------N 537 (707)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------~ 537 (707)
..|+.+...|...|++++|.+.+++. ...|+ ..++..++..|...|++++|...+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888999999999999999998875 11222 258889999999999999999999999886432 1
Q ss_pred chhHHHHHHHhhhcCChhhH-HHHHHHHhh
Q 043060 538 PGAYVLLSNMYAGAGRWDDV-ATIRTRLND 566 (707)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 566 (707)
..+|..++.+|.+.|++++| ...+++..+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56889999999999999999 777877653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.1e-07 Score=84.22 Aligned_cols=157 Identities=10% Similarity=-0.022 Sum_probs=115.3
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH-Hh
Q 043060 372 LWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSA-CN 447 (707)
Q Consensus 372 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~ 447 (707)
....+...+.+.|++++|...|++... .+...|..+...+...|++++|+..|++... ..|+......+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHHH
Confidence 345667778888999999999988753 3667888888889999999999999988876 44543322221111 12
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChhHH
Q 043060 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD---AAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~A 523 (707)
..+...+|...++...+. .+.+...+..+...|...|++++|.+.|+++ ...|+ ...|..+...+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 222233467778877652 2335788888999999999999999999886 55554 56888999999999999999
Q ss_pred HHHHHHHHc
Q 043060 524 ESVAKHLLE 532 (707)
Q Consensus 524 ~~~~~~~~~ 532 (707)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.4e-06 Score=82.07 Aligned_cols=225 Identities=12% Similarity=0.057 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHhhcCCCCChhh-HHhHHHHHhccC--CchHHHHHHHHHHHhCCCCCcHHHHhHHhhHH----Hhc---C
Q 043060 315 YKEALMLFRQMLQSNIEPNDVT-FLSVLPACAYLG--ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY----AKC---G 384 (707)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y----~~~---g 384 (707)
.++|++++.+++.. .|+..| ++.--..+...+ .++++...+..++...+. +..+|+.-...+ .+. +
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk--~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK--NYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc--cHHHHHHHHHHHHHHHHhccccC
Confidence 34566666666553 333332 333334444445 566666666666666555 444454443333 344 6
Q ss_pred CHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCC------H
Q 043060 385 NIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKAD--KALSLFSRMIGEGLQPD-DITFVGVLSACNHAGL------L 452 (707)
Q Consensus 385 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~------~ 452 (707)
++++++++++++. .++..+|+--.-.+.+.|.++ ++++.++++++ ..|. ...++.-.....+.+. +
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 7888888888773 557778888888888888888 99999999998 4454 3466665556666665 8
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChhHHHHH
Q 043060 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE-AEALLKTM-EM----KPDAAIWTSLLGACRVHGRLELGESV 526 (707)
Q Consensus 453 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~g~~~~A~~~ 526 (707)
+++++.++.++. ..+-|...|+.+..++.+.|+..+ +.++.+++ .. ..+...+..++..+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 999999998886 344578889999999999998555 55577765 22 23578899999999999999999999
Q ss_pred HHHHHc-cCCCCchhHHHHHHH
Q 043060 527 AKHLLE-LEPENPGAYVLLSNM 547 (707)
Q Consensus 527 ~~~~~~-~~p~~~~~~~~l~~~ 547 (707)
++.+.+ .+|.....|...+..
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHhccChHHHHHHHHHHhh
Confidence 999996 799887777765544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=8e-07 Score=83.10 Aligned_cols=144 Identities=9% Similarity=0.008 Sum_probs=89.7
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCC
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGL 451 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 451 (707)
+..+...|...|++++|.+.|++...++...|..+...|...|++++|+..|++..+ ..|+ ...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHccc
Confidence 445566666777777777777776666666677777777777777777777777666 2333 3355555556666666
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043060 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHL 530 (707)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~ 530 (707)
+++|...|+.+.+...-.+... +...| +...|+ ...|..+...+...|++++|...++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666665554211000000 00000 012333 467888888899999999999999999
Q ss_pred HccCCCC
Q 043060 531 LELEPEN 537 (707)
Q Consensus 531 ~~~~p~~ 537 (707)
+++.|++
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 9998876
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.6e-07 Score=82.43 Aligned_cols=126 Identities=8% Similarity=0.021 Sum_probs=89.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 043060 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRV 516 (707)
Q Consensus 439 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 516 (707)
+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344444555555666666555555442 2234556666777777777777777777764 3344 37788888999999
Q ss_pred cCChhHHHHHHHHHHccCCCCchhHHHHHHH--hhhcCChhhHHHHHHHHhh
Q 043060 517 HGRLELGESVAKHLLELEPENPGAYVLLSNM--YAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~ 566 (707)
.|++++|...++++++..|.++..+..+..+ +.+.|++++|.+.++...+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999988887554444 8888999999999887653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=6.7e-07 Score=88.17 Aligned_cols=116 Identities=8% Similarity=-0.019 Sum_probs=50.1
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC--CChHHH-HHHHHHHHHcCCHHHHH
Q 043060 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY--KTLASW-NAMISGLAMHGKADKAL 421 (707)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~~~~g~~~~A~ 421 (707)
...|+++.|...++.+.+..+. +...+..+...|.+.|++++|...|+++.. ++.... ......+.+.++.++|+
T Consensus 128 ~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~ 205 (287)
T 3qou_A 128 MQESNYTDALPLLXDAWQLSNQ--NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEI 205 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTS--CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCc--chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccH
Confidence 3334444444444444333333 444455555555555555555555555432 222111 11112233444444455
Q ss_pred HHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 422 SLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 422 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
..|++..+ ..|+. ..+..+..++...|++++|...|..+.+
T Consensus 206 ~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 206 QQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555544 23332 2344444444444444444444444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.64 E-value=7.1e-08 Score=94.86 Aligned_cols=191 Identities=7% Similarity=-0.036 Sum_probs=126.8
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLS 444 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 444 (707)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++..+ ..|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45566777777888888888888887652 34667788888888888888888888888877 45554 46777777
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 043060 445 ACNHAGLLDIGRQYFNAMIQDYKISPKL-QHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 445 a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 523 (707)
++...|++++|...|+...+.. |+. ..+...+....+.++...... .......++......+.. + ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 8888888888888888766531 110 011111111111111111111 222233344444444433 2 36899999
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHhhhc-CChhhHHHHHHHHhhC
Q 043060 524 ESVAKHLLELEPENPGAYVLLSNMYAGA-GRWDDVATIRTRLNDK 567 (707)
Q Consensus 524 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 567 (707)
.+.++++++++|++......+...+.+. +++++|.++|.++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998887777887777776 7899999999988764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-07 Score=84.87 Aligned_cols=121 Identities=8% Similarity=0.098 Sum_probs=93.6
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--h
Q 043060 447 NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGA-CRVHGRL--E 521 (707)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~ 521 (707)
...|++++|...++...+. .+.+...|..+...|...|++++|.+.|++. ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4466777777777776653 2345677778888888888888888888875 3344 47778888888 7788988 9
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 522 LGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 522 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+|...++++++.+|.++.++..++.+|...|++++|...++++.+...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999887654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=3.5e-07 Score=77.59 Aligned_cols=116 Identities=10% Similarity=0.010 Sum_probs=84.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACR 515 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 515 (707)
.+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++. ...|+ ...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 4445555555666666666666665542 2234556666777777777777777777764 33444 778888888999
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChh
Q 043060 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555 (707)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 555 (707)
..|++++|...++++++..|+++..+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998888753
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.62 E-value=4.5e-07 Score=76.13 Aligned_cols=113 Identities=21% Similarity=0.283 Sum_probs=79.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACR 515 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 515 (707)
.+..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|...++++ ...| +..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4445555555666666666666655542 2234556666777777777777777777765 2233 4778888888888
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcC
Q 043060 516 VHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAG 552 (707)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 552 (707)
..|++++|...++++++..|.++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999988888888888776544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-06 Score=80.81 Aligned_cols=173 Identities=7% Similarity=-0.139 Sum_probs=131.5
Q ss_pred HHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC-CChHHHHHHHHHHHHcC----CHHHHHHHHHHH
Q 043060 353 GKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY-KTLASWNAMISGLAMHG----KADKALSLFSRM 427 (707)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m 427 (707)
|.+.+....+.| ++..+..|..+|...+++++|.+.|++... .+..++..+...|.. + ++++|++.|++.
T Consensus 5 A~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 334444444443 667778888888888888899888887643 466778888887777 6 899999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHH----cCCHHHHHHHHH
Q 043060 428 IGEGLQPDDITFVGVLSACNH----AGLLDIGRQYFNAMIQDYKISPK---LQHYGCMVDLLGR----AGLFDEAEALLK 496 (707)
Q Consensus 428 ~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~ 496 (707)
.+.| +...+..|...|.. .+++++|..+|+...+ ..|. ...+..|..+|.. .+++++|.+.|+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8754 55567777777776 8899999999998864 2332 6778888889988 889999999999
Q ss_pred hC-CCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHccCCC
Q 043060 497 TM-EMKPDAAIWTSLLGACRVH-G-----RLELGESVAKHLLELEPE 536 (707)
Q Consensus 497 ~~-~~~p~~~~~~~ll~~~~~~-g-----~~~~A~~~~~~~~~~~p~ 536 (707)
+. ...++...+..|...|... | +.++|...++++.+.+..
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 86 3334566777888877653 3 899999999999988753
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.3e-07 Score=78.08 Aligned_cols=112 Identities=12% Similarity=0.027 Sum_probs=66.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 043060 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVH 517 (707)
Q Consensus 440 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 517 (707)
..+...+...|++++|...|+...+ ..+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+...
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 97 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAM 97 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 3333334444444444444444332 11123344444555555555555555555543 2233 366777777888888
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCC
Q 043060 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 518 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 553 (707)
|++++|...++++++.+|.+...+..++.++...|+
T Consensus 98 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 98 KDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888887776653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.3e-07 Score=87.94 Aligned_cols=183 Identities=10% Similarity=-0.018 Sum_probs=131.2
Q ss_pred hcCCHHHHHHHHhcCC---CCChHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHh--------------
Q 043060 382 KCGNIKAAEQVFDGMG---YKTLASWNAM-------ISGLAMHGKADKALSLFSRMIGEGLQPDDI-------------- 437 (707)
Q Consensus 382 ~~g~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 437 (707)
..++...|.+.|.++. ......|+.+ ...+...++..+++..+++-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4677778888887663 3345577777 4555555566666666655554 444322
Q ss_pred --------HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH----H
Q 043060 438 --------TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDA----A 505 (707)
Q Consensus 438 --------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 505 (707)
....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123355677888999999999988754 2354335566677888999999999999876444432 3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccC--CC-CchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 506 IWTSLLGACRVHGRLELGESVAKHLLELE--PE-NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 506 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|..+|+++.....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 67788889999999999999999988533 44 445788899999999999999999999887543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.8e-07 Score=93.13 Aligned_cols=144 Identities=13% Similarity=0.037 Sum_probs=109.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 479 (707)
+...|..+...|.+.|++++|+..|++.++ +.|+...+ ..+++.+.-. .....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~~~---------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKAQA---------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHHHH---------HHHHHHHHHH
Confidence 445777788888888888888888888877 44443210 0011111000 1235677788
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhH
Q 043060 480 DLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 557 (707)
.+|.+.|++++|++.+++. ...|+ ...|..+..++...|++++|+..++++++++|+++.++..++.++.+.|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999988886 45554 889999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHh
Q 043060 558 -ATIRTRLN 565 (707)
Q Consensus 558 -~~~~~~m~ 565 (707)
...++.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 45666664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.8e-07 Score=78.02 Aligned_cols=97 Identities=10% Similarity=0.016 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 472 LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
...+..+...+.+.|++++|++.|++. ...|+ ...|..+..++...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666778888899999999988875 44554 7889999999999999999999999999999999999999999999
Q ss_pred hcCChhhHHHHHHHHhhCC
Q 043060 550 GAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 550 ~~g~~~~a~~~~~~m~~~~ 568 (707)
..|++++|.+.+++..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 9999999999999887644
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-07 Score=83.02 Aligned_cols=115 Identities=13% Similarity=0.012 Sum_probs=85.4
Q ss_pred HHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 043060 424 FSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMK 501 (707)
Q Consensus 424 ~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 501 (707)
|+++.. +.|+.. .+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|++.|++. ...
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444443 445443 5556666777778888888887777652 2346677777888888888888888888875 445
Q ss_pred CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHH
Q 043060 502 PD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542 (707)
Q Consensus 502 p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 542 (707)
|+ ...|..+..++...|++++|+..+++++++.|+++....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 54 778888999999999999999999999999998776533
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.56 E-value=3.2e-05 Score=82.19 Aligned_cols=339 Identities=12% Similarity=-0.009 Sum_probs=180.8
Q ss_pred CChHHHHHHHhcCCC--CCcchHHHHHHHHHcCCC-chHHHHHHHHHHHC-CCCC-CcccHHHHHHHHh----ccCChHH
Q 043060 78 GDLSYALLVFETIRE--PNQVIWNNIIRGHSLSSS-PVVAIKFYVRMILS-GFVP-NTYTFPFILKSCA----KISAISE 148 (707)
Q Consensus 78 g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~p-~~~t~~~ll~~~~----~~~~~~~ 148 (707)
|..+.+..+|++... |++..|..-+.-..+.+. .+....+|+..+.. |..| +...|...+..+. ..++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 556666666665443 566666655554444432 23445555555542 3222 3334444444332 1244556
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHh-------------CCChhHHHHHHhcCC----CCCeehHHHHHHHHHhCCC
Q 043060 149 GKQIHAHVLKLGLESDPFVHTSLINMYAQ-------------NGELESARLVFNKSS----LRDAVSYTALITGYASRGY 211 (707)
Q Consensus 149 a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~ 211 (707)
++.+++..+......-...|......-.. .+.+..|+.+++.+. ..+...|...+.--...+.
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 66666666653211111122211111000 011222333322211 1133356555544322211
Q ss_pred -------hhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCH
Q 043060 212 -------LDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDL 284 (707)
Q Consensus 212 -------~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 284 (707)
.+.+..+|++++. ..+-+...|...+.-+.+.|+.+.|..+++..++. +.+...+...... .+.++.
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~---~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~~ 261 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILD---SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEAV 261 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHH---HTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTHH
T ss_pred cCcchhhHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhHH
Confidence 2345667777652 22334556666666677788888888888888887 4444444322221 011111
Q ss_pred HHHHHHHHhcC--C-------C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHH-hccCCch
Q 043060 285 VKARDLFESIE--K-------R---DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPAC-AYLGALD 351 (707)
Q Consensus 285 ~~A~~~~~~~~--~-------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~ 351 (707)
...+.+... + + ....|-..+..+.+.+..+.|..+|.+. .. ...+...|......- ...++.+
T Consensus 262 --~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~ 337 (493)
T 2uy1_A 262 --YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRA 337 (493)
T ss_dssp --HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSH
T ss_pred --HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChH
Confidence 111222110 0 0 1245666677777778899999999888 32 112333333211111 1233688
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043060 352 LGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429 (707)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (707)
.|+.+++...+..+. ++..+...++...+.|+.+.|..+|+++. +....|...+.--...|+.+.+..+++++..
T Consensus 338 ~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 338 TPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999998887654 45566777888888899999999999884 4567788888777778888888888887764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.56 E-value=3.6e-07 Score=79.89 Aligned_cols=105 Identities=6% Similarity=-0.031 Sum_probs=88.2
Q ss_pred CCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHH
Q 043060 432 LQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWT 508 (707)
Q Consensus 432 ~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~ 508 (707)
+.|+.. .+..+...+.+.|++++|...|+.+.+. -+.+...|..+..+|.+.|++++|++.|++. .+.|+ +..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 455554 6777788888999999999999988863 3346788889999999999999999999986 55665 78899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 509 SLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 509 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
.+..++...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999998654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.4e-07 Score=85.92 Aligned_cols=139 Identities=15% Similarity=-0.026 Sum_probs=103.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHH
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK--LQHYGCMVDL 481 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~ 481 (707)
+-.....+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|+...+. ..|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHH
Confidence 34456677788888888888888776 3466555555566788889999999988865431 1121 2356778889
Q ss_pred HHHcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 482 LGRAGLFDEAEALLKTME---MKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
+.+.|++++|++.|++.. ..|. ...+..+..++.+.|+.++|...|++++..+|+ +.++..|.+.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 999999999999999872 2254 447778888999999999999999999999998 7666666443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.2e-07 Score=78.00 Aligned_cols=96 Identities=11% Similarity=-0.002 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhc
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGA 551 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 551 (707)
.+..+...+.+.|++++|+..|++. ...|+ ...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455677888999999999999886 55564 889999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhhCCC
Q 043060 552 GRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 552 g~~~~a~~~~~~m~~~~~ 569 (707)
|++++|...+++..+...
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999887543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.52 E-value=5.4e-07 Score=95.65 Aligned_cols=118 Identities=8% Similarity=0.045 Sum_probs=92.8
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChh
Q 043060 444 SACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLE 521 (707)
Q Consensus 444 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~ 521 (707)
..+.+.|++++|.+.|+++.+. .+.+...|..+..+|.+.|++++|++.+++. ...|+ ..+|..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3455677777777777777653 2335677888888888888888888888875 55565 788999999999999999
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHH--hhhcCChhhHHHHHHH
Q 043060 522 LGESVAKHLLELEPENPGAYVLLSNM--YAGAGRWDDVATIRTR 563 (707)
Q Consensus 522 ~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 563 (707)
+|++.++++++++|+++.++..++.+ +.+.|++++|++.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999888 8899999999999874
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=7.1e-08 Score=89.33 Aligned_cols=174 Identities=9% Similarity=-0.025 Sum_probs=108.4
Q ss_pred hHHhhHHHhcCCHHHHHHHHhcCCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC
Q 043060 374 TSLIDMYAKCGNIKAAEQVFDGMGYK---TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAG 450 (707)
Q Consensus 374 ~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 450 (707)
+..+......|++++|.+.++..... ....|..+...+...|++++|+..|++..+ ..|+...+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~-------- 77 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ-------- 77 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------
Confidence 44455556667777777777644322 344677778888888999999999988887 33432211000
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 043060 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAK 528 (707)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~ 528 (707)
..+.-. .. .....|..+..+|.+.|++++|+..+++. ...|+ ...|..+..++...|++++|...++
T Consensus 78 ~~~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 ILLDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 000000 00 01356667788888899999999888875 44554 7889999999999999999999999
Q ss_pred HHHccCCCCchhHHHHHHHhhhcCChhhHH-HHHHHHhhCC
Q 043060 529 HLLELEPENPGAYVLLSNMYAGAGRWDDVA-TIRTRLNDKG 568 (707)
Q Consensus 529 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~~ 568 (707)
++++++|+++.++..++.++...|+.+++. ..++.|...+
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999988888877 5555554443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-06 Score=77.92 Aligned_cols=98 Identities=10% Similarity=0.065 Sum_probs=77.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
+...+..+...|.+.|++++|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++.+|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456666777778888888888888775 4445 4778888888888888888888888888888888888888888888
Q ss_pred hhcCChhhHHHHHHHHhhCC
Q 043060 549 AGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~ 568 (707)
...|++++|.+.+++..+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC
Confidence 88888888888888887644
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.4e-07 Score=73.98 Aligned_cols=99 Identities=14% Similarity=0.131 Sum_probs=82.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--CchhHHHHHH
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPE--NPGAYVLLSN 546 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 546 (707)
+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3445566777778888888888888775 3334 4778888999999999999999999999999999 8999999999
Q ss_pred Hhhhc-CChhhHHHHHHHHhhCCC
Q 043060 547 MYAGA-GRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 547 ~~~~~-g~~~~a~~~~~~m~~~~~ 569 (707)
+|... |++++|.+.+++..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999887654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=9.8e-07 Score=75.77 Aligned_cols=99 Identities=17% Similarity=0.080 Sum_probs=86.5
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
.+...+..+...+...|++++|...|++. ...|+ ...|..+...+...|++++|...++++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45677888888888999999999888875 44454 78899999999999999999999999999999999999999999
Q ss_pred hhhcCChhhHHHHHHHHhhCC
Q 043060 548 YAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~ 568 (707)
|...|++++|...+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999987654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.48 E-value=2.9e-07 Score=79.90 Aligned_cols=106 Identities=15% Similarity=0.027 Sum_probs=78.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACR 515 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 515 (707)
.+..+...+...|++++|...|+.+.+. .+.+...|..+..+|.+.|++++|+..|++. ...|+ ...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4445555666777777777777776652 2335666777778888888888888888775 44454 677888888999
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHH
Q 043060 516 VHGRLELGESVAKHLLELEPENPGAYVLLS 545 (707)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 545 (707)
..|++++|...+++++++.|+++.......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 999999999999999999988876655433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-05 Score=78.30 Aligned_cols=159 Identities=9% Similarity=-0.041 Sum_probs=120.4
Q ss_pred HHhhHHHhcCCHHHHHHHHhcCCCC---ChH------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH----hHHH
Q 043060 375 SLIDMYAKCGNIKAAEQVFDGMGYK---TLA------SWNAMISGLAMHGKADKALSLFSRMIGEGLQ-PDD----ITFV 440 (707)
Q Consensus 375 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~ 440 (707)
..+..+...|++++|.+.+++.... +.. .+..+...+...|++++|+..|++..+.... ++. .+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788899999999999876332 111 2334666677788999999999999984322 222 2688
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhc----CCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHH
Q 043060 441 GVLSACNHAGLLDIGRQYFNAMIQDY----KISPK-LQHYGCMVDLLGRAGLFDEAEALLKTM-------EMKPD-AAIW 507 (707)
Q Consensus 441 ~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~ 507 (707)
.+...|...|++++|..+|+.+.+.. +..+. ..+|..+...|.+.|++++|.+.+++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999999887532 11121 247788999999999999999998875 22233 6789
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHcc
Q 043060 508 TSLLGACRVHGR-LELGESVAKHLLEL 533 (707)
Q Consensus 508 ~~ll~~~~~~g~-~~~A~~~~~~~~~~ 533 (707)
..+...+...|+ +++|.+.+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999995 69999999998864
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.2e-07 Score=76.47 Aligned_cols=94 Identities=10% Similarity=0.038 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc-------hhHHH
Q 043060 473 QHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP-------GAYVL 543 (707)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~ 543 (707)
..+..+...+.+.|++++|++.|++. .+.|+ ..+|..+..++...|++++|+..++++++++|++. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667888899999999999999885 55665 88899999999999999999999999999988654 36788
Q ss_pred HHHHhhhcCChhhHHHHHHHHhh
Q 043060 544 LSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 544 l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
++.+|...|++++|++.|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 89999999999999999998765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=2.6e-06 Score=70.50 Aligned_cols=106 Identities=19% Similarity=0.134 Sum_probs=55.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 043060 440 VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVH 517 (707)
Q Consensus 440 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~ 517 (707)
..+...+...|++++|...|+...+. .+.+...+..+...|.+.|++++|.+.+++. ...|+ ...|..+...+...
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 33334444444444444444444331 1123444444555555555555555555543 22332 55566666666666
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 518 GRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 518 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
|++++|...++++++.+|+++..+..++.+
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 666666666666666666666555555444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.43 E-value=8.1e-07 Score=80.33 Aligned_cols=126 Identities=8% Similarity=0.086 Sum_probs=93.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-HHHcCCH-
Q 043060 412 AMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL-LGRAGLF- 488 (707)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~- 488 (707)
...|++++|+..|++..+ ..| +...+..+...+...|++++|...|+.+.+. .+.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 345677778888877776 344 3457777777888888888888888887763 22356677777777 7788888
Q ss_pred -HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 043060 489 -DEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541 (707)
Q Consensus 489 -~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 541 (707)
++|...+++. ...|+ ...|..+...+...|++++|...++++++..|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8999888876 44555 77888899999999999999999999999999876543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.43 E-value=4e-06 Score=77.48 Aligned_cols=155 Identities=14% Similarity=0.054 Sum_probs=70.9
Q ss_pred hcCCHHHHHH---HHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHhccCCHH
Q 043060 382 KCGNIKAAEQ---VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE----GLQPD-DITFVGVLSACNHAGLLD 453 (707)
Q Consensus 382 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 453 (707)
..|++++|.+ .+..-+.....++..+...+...|++++|+..+++..+. +..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 443333233445666666666666666666666665541 11111 123344444444555555
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043060 454 IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP-D-AAIWTSLLGACRVHGRLELGESVAKHLL 531 (707)
Q Consensus 454 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 531 (707)
+|...+++..+...-.+ ..| . ..++..+...+...|++++|...+++++
T Consensus 84 ~A~~~~~~al~~~~~~~-----------------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEERELLASLP-----------------------------EDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHSC-----------------------------CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-----------------------------ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55554444333211011 011 0 2334445555555555555555555555
Q ss_pred ccC--CCCc----hhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 532 ELE--PENP----GAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 532 ~~~--p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
++. ..++ .++..++.+|...|++++|.+.+++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 432 1111 123455555666666666655555554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-06 Score=73.89 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=90.2
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
.+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++..|.++.++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 35677888999999999999999999986 5566 488999999999999999999999999999999999999999999
Q ss_pred hhhcCChhhHHHHHHHHhhCC
Q 043060 548 YAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~ 568 (707)
|...|++++|.+.+++..+..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999988754
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-06 Score=92.19 Aligned_cols=120 Identities=10% Similarity=-0.005 Sum_probs=64.5
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhc
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNH 448 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 448 (707)
+..+...|.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++|++.|++..+ +.|+. .++..+..++..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 3444555666666666666666542 33455666666666666666666666666666 34433 355556666666
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH--HHHcCCHHHHHHHHH
Q 043060 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL--LGRAGLFDEAEALLK 496 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 496 (707)
.|++++|.+.|+++.+... .+...+..+..+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHST--TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666666666554311 122233333333 555566666666555
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.2e-06 Score=81.00 Aligned_cols=164 Identities=9% Similarity=-0.034 Sum_probs=121.4
Q ss_pred HHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--
Q 043060 370 VSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTL------ASWNAMISGLAMHGKADKALSLFSRMIGEGL---QPD-- 435 (707)
Q Consensus 370 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~-- 435 (707)
...+...+..+...|++++|.+.+++.. .... ..+..+...+...|++++|+..|++..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3345566778889999999998887542 1111 2344456667788999999999999886321 122
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHhC-C------CCCC
Q 043060 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK-----LQHYGCMVDLLGRAGLFDEAEALLKTM-E------MKPD 503 (707)
Q Consensus 436 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~------~~p~ 503 (707)
..+++.+...|...|++++|..+|+++.+.....|+ ...+..+...|.+.|++++|++.+++. . ....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 237888899999999999999999988732212222 257888999999999999999999875 1 1112
Q ss_pred -HHHHHHHHHHHHhcCChhHH-HHHHHHHHcc
Q 043060 504 -AAIWTSLLGACRVHGRLELG-ESVAKHLLEL 533 (707)
Q Consensus 504 -~~~~~~ll~~~~~~g~~~~A-~~~~~~~~~~ 533 (707)
..+|..+...+...|++++| ...+++++++
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 67889999999999999999 7778888764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-06 Score=72.76 Aligned_cols=109 Identities=11% Similarity=-0.043 Sum_probs=76.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACR 515 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 515 (707)
.+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|++.+++. ...|+ ...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444455555666666666666665542 2234566667777777777777777777765 44554 778888888999
Q ss_pred hcCChhHHHHHHHHHHccC------CCCchhHHHHHHHh
Q 043060 516 VHGRLELGESVAKHLLELE------PENPGAYVLLSNMY 548 (707)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~ 548 (707)
..|++++|...++++++++ |.++.....+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 9999999999999999988 77777766666554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-06 Score=71.60 Aligned_cols=99 Identities=10% Similarity=0.105 Sum_probs=88.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
....+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|.++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456777888999999999999999986 4445 5888999999999999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHhhCCC
Q 043060 549 AGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~~ 569 (707)
...|++++|.+.+++..+.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 999999999999999887543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.9e-06 Score=76.82 Aligned_cols=117 Identities=12% Similarity=0.023 Sum_probs=80.4
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCC
Q 043060 448 HAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-------EMKPD-AAIWTSLLGACRVHGR 519 (707)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~ 519 (707)
..|++++|.+.++.+.. ........+..+...|...|++++|.+.+++. +..|. ..++..+...+...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 34566666664433322 11123455666666677777777776666654 22222 5678888899999999
Q ss_pred hhHHHHHHHHHHcc---CCCC----chhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 520 LELGESVAKHLLEL---EPEN----PGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 520 ~~~A~~~~~~~~~~---~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
+++|...+++++++ .+++ ..++..++.+|...|++++|.+.+++..+
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999886 3423 35688999999999999999999988864
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-05 Score=78.20 Aligned_cols=193 Identities=13% Similarity=0.164 Sum_probs=98.3
Q ss_pred HHHHhHHhhHHHhcC-CHHHHHHHHhcCC---CCChHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHCCCCCCH-hHHHHH
Q 043060 370 VSLWTSLIDMYAKCG-NIKAAEQVFDGMG---YKTLASWNAMISGLAMH-G-KADKALSLFSRMIGEGLQPDD-ITFVGV 442 (707)
Q Consensus 370 ~~~~~~li~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p~~-~t~~~l 442 (707)
..+|+.--..+...| .+++++++++.+. .++..+|+.-...+.+. + ++++++++++++.+ ..|.. ..+..-
T Consensus 88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--~dpkNy~AW~~R 165 (349)
T 3q7a_A 88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--PDPKNYHTWAYL 165 (349)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--SCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 333444333333444 2455555444432 22444454444444443 4 45555555555554 23322 233332
Q ss_pred HHHHhccCCHH--------HHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC-------HHHHHHHHHhC-CCCCC-HH
Q 043060 443 LSACNHAGLLD--------IGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL-------FDEAEALLKTM-EMKPD-AA 505 (707)
Q Consensus 443 l~a~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~~-~~~p~-~~ 505 (707)
.....+.|.++ +++++++.+++. .+-+...|+....++.+.++ ++++++.++++ ...|+ ..
T Consensus 166 ~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S 243 (349)
T 3q7a_A 166 HWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS 243 (349)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence 22222222222 555666655542 22355555555555555554 56666666554 33443 66
Q ss_pred HHHHHHHHHHhcCCh--------------------hHHHHHHHHHHccC------CCCchhHHHHHHHhhhcCChhhHHH
Q 043060 506 IWTSLLGACRVHGRL--------------------ELGESVAKHLLELE------PENPGAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 506 ~~~~ll~~~~~~g~~--------------------~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~ 559 (707)
.|+-+-..+.+.|+. .........+.... +..+.+...|+++|...|+.++|.+
T Consensus 244 aW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~ 323 (349)
T 3q7a_A 244 AWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAK 323 (349)
T ss_dssp HHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHH
Confidence 676666666555543 22222222222222 4677788899999999999999999
Q ss_pred HHHHHhh
Q 043060 560 IRTRLND 566 (707)
Q Consensus 560 ~~~~m~~ 566 (707)
+++.+.+
T Consensus 324 ~~~~l~~ 330 (349)
T 3q7a_A 324 VFEKLSS 330 (349)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999864
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.1e-06 Score=71.94 Aligned_cols=97 Identities=23% Similarity=0.347 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 472 LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|.++.++..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999986 3344 47889999999999999999999999999999999999999999999
Q ss_pred hcCChhhHHHHHHHHhhCC
Q 043060 550 GAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 550 ~~g~~~~a~~~~~~m~~~~ 568 (707)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999988754
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.7e-06 Score=75.56 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 504 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
..+|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 56888899999999999999999999999999999999999999999999999999999987743
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.6e-06 Score=75.92 Aligned_cols=107 Identities=8% Similarity=-0.018 Sum_probs=78.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACR 515 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 515 (707)
.+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|++.|++. ...|+ ...|..+..++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4555555566666666666666666542 2235566777777778888888888877775 44555 888999999999
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 043060 516 VHGRLELGESVAKHLLELEPENPGAYVLLSN 546 (707)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 546 (707)
..|++++|...++++++++|+++..+...+.
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 9999999999999999999999886665543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.5e-06 Score=71.04 Aligned_cols=78 Identities=19% Similarity=0.061 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhh
Q 043060 473 QHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550 (707)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 550 (707)
..|..+...|...|++++|++.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..+..+..+
T Consensus 66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 66 VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 34445555556666666666666553 2334 366777777888888888888888888888888877777666665443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=4e-06 Score=72.78 Aligned_cols=99 Identities=14% Similarity=0.059 Sum_probs=89.0
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 043060 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544 (707)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 544 (707)
.+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35677788888899999999999999886 66677 67889999999999999999999999999999999999999
Q ss_pred HHHhhhcCChhhHHHHHHHHhhCC
Q 043060 545 SNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 545 ~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
+.+|...|++++|.+.+++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999988754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.34 E-value=4.6e-06 Score=81.79 Aligned_cols=181 Identities=9% Similarity=-0.036 Sum_probs=112.4
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHH
Q 043060 343 ACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKADK 419 (707)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 419 (707)
.+...|+++.|...+..+++..+. +...+..+..+|.+.|++++|...+++... .+...|..+..+|...|++++
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 90 (281)
T 2c2l_A 13 RLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDE 90 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 333444444444444444444333 667788888899999999999999987643 366788889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043060 420 ALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM 498 (707)
Q Consensus 420 A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 498 (707)
|+..|++..+ ..|+.. .+...+....+ ..++..... ... .....+......+...+ .|+.++|++.+++.
T Consensus 91 A~~~~~~al~--l~p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~-~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~a 161 (281)
T 2c2l_A 91 AIANLQRAYS--LAKEQRLNFGDDIPSALR---IAKKKRWNS-IEE-RRIHQESELHSYLTRLI--AAERERELEECQRN 161 (281)
T ss_dssp HHHHHHHHHH--HHHHTTCCCCSHHHHHHH---HHHHHHHHH-HHH-TCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGG
T ss_pred HHHHHHHHHH--hCccchhhHHHHHHHHHH---HHHHHHHHH-HHH-HHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhh
Confidence 9999999887 344321 11111111111 111112111 222 24445555555554433 68999999988875
Q ss_pred -CCCCCH-HHHHHHHHHHHhc-CChhHHHHHHHHHHccC
Q 043060 499 -EMKPDA-AIWTSLLGACRVH-GRLELGESVAKHLLELE 534 (707)
Q Consensus 499 -~~~p~~-~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~ 534 (707)
...|+. .....+...+... +.+++|.++|+++.+..
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 162 HEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp GTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred hccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 667764 4444444445444 67888999999887743
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.8e-06 Score=74.63 Aligned_cols=93 Identities=16% Similarity=0.063 Sum_probs=74.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCChhHHHHHHHHHHcc-------
Q 043060 475 YGCMVDLLGRAGLFDEAEALLKTM-EMKPD-------------AAIWTSLLGACRVHGRLELGESVAKHLLEL------- 533 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------- 533 (707)
+......+.+.|++++|++.|++. .+.|+ ...|..+..++.+.|++++|+..+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 334455566666777776666664 22222 338999999999999999999999999999
Q ss_pred CCCCchhH----HHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 534 EPENPGAY----VLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 534 ~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
+|++..+| +.++.++...|++++|+..|++..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999 99999999999999999999998764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=5.7e-05 Score=74.62 Aligned_cols=179 Identities=14% Similarity=0.103 Sum_probs=103.1
Q ss_pred HHHHHHHHhcC---CCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCC-HHHHHHH
Q 043060 386 IKAAEQVFDGM---GYKTLASWNAMISGLAMHG--KADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGL-LDIGRQY 458 (707)
Q Consensus 386 ~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~-~~~a~~~ 458 (707)
++++..+++.+ ..++..+|+.-.-.+...| ++++++..++++.+ ..|.. ..++.-.......|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34444444443 2345555655555555555 35666666666666 33332 244444444445555 4666666
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHHc--------------CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----
Q 043060 459 FNAMIQDYKISPKLQHYGCMVDLLGRA--------------GLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVH----- 517 (707)
Q Consensus 459 ~~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~----- 517 (707)
++.+++. .+-|...|+....++.+. +.++++++.+++. ...|+ ...|+-+-..+...
T Consensus 168 ~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 6666652 233555555555444443 3467777777664 34454 77776555555444
Q ss_pred ------CChhHHHHHHHHHHccCCCCchhHHHHHHH---hhhcCChhhHHHHHHHHhhCC
Q 043060 518 ------GRLELGESVAKHLLELEPENPGAYVLLSNM---YAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 518 ------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~ 568 (707)
+.++++++.++++++++|++.-++..++.. ....|..++....+.++.+-+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 457888888999999999875544444332 234677778888888887644
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.32 E-value=7.7e-06 Score=72.59 Aligned_cols=127 Identities=13% Similarity=0.043 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQP-DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 480 (707)
..|..+...+...|++++|+..|++..+ ..| +..++..+...+...|++++|...++...+. .+.+...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 3566677777788888888888888777 344 3456777777788888888888888887763 2345677778888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC-HHHHH--HHHHHHHhcCChhHHHHHHHHHHc
Q 043060 481 LLGRAGLFDEAEALLKTM-EMKPD-AAIWT--SLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~--~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
+|.+.|++++|.+.+++. ...|+ ...+. .++..+...|++++|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888888875 33443 44553 334446778888888888877654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.9e-06 Score=71.82 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=66.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHHHhh
Q 043060 478 MVDLLGRAGLFDEAEALLKTM-EMKPD-A---AIWTSLLGACRVHGRLELGESVAKHLLELEPEN---PGAYVLLSNMYA 549 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 549 (707)
+...+.+.|++++|.+.|++. ...|+ . ..+..+...+...|++++|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 455666777777777777764 22333 2 467777777888888888888888888888877 666788888888
Q ss_pred hcCChhhHHHHHHHHhhCC
Q 043060 550 GAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 550 ~~g~~~~a~~~~~~m~~~~ 568 (707)
..|++++|...++++.+..
T Consensus 88 ~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHHC
Confidence 8888888888888777643
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00017 Score=71.53 Aligned_cols=230 Identities=13% Similarity=0.111 Sum_probs=152.7
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCChh-hHHhHHHHHhccC-CchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhc-C-
Q 043060 309 YTHTSDYKEALMLFRQMLQSNIEPNDV-TFLSVLPACAYLG-ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKC-G- 384 (707)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~-g- 384 (707)
..+.+..++|++++.+++.. .|+.. .++.--..+...+ .++++...+..++...+. +..+|+.-...+.+. +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK--ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK--SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHCCS
T ss_pred HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhcCC
Confidence 33444556677777777664 34333 3444444444555 467777777777776666 677777766666665 6
Q ss_pred CHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCC-
Q 043060 385 NIKAAEQVFDGMGY---KTLASWNAMISGLAMHGKAD--------KALSLFSRMIGEGLQP-DDITFVGVLSACNHAGL- 451 (707)
Q Consensus 385 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~- 451 (707)
++++++++++++.. +|..+|+--.-.+.+.|.++ ++++.++++++ ..| |...++.......+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcccc
Confidence 77888888888754 35667776666665555555 89999999988 445 44467777667777665
Q ss_pred ------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH--------------------HHHHHHHHhC-CC----
Q 043060 452 ------LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF--------------------DEAEALLKTM-EM---- 500 (707)
Q Consensus 452 ------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~-~~---- 500 (707)
+++++++++.++. ..+-|...|+-+-..+.+.|+. .+..++..++ ..
T Consensus 218 ~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred ccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 7888888888876 3344777888877788777764 3334444443 11
Q ss_pred ---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-ccCCCCchhHHHHHH
Q 043060 501 ---KPDAAIWTSLLGACRVHGRLELGESVAKHLL-ELEPENPGAYVLLSN 546 (707)
Q Consensus 501 ---~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~ 546 (707)
.+....+..|+..|...|+.++|.++++.+. +.+|-....|...+.
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2457888899999999999999999999987 678866555554433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=3.5e-06 Score=71.20 Aligned_cols=98 Identities=10% Similarity=0.107 Sum_probs=88.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567778889999999999999999986 4445 4888999999999999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHhhCC
Q 043060 549 AGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~ 568 (707)
...|++++|.+.+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999988754
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.28 E-value=5.5e-06 Score=83.56 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=67.8
Q ss_pred CCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCC---------------hHHHHHHHH
Q 043060 348 GALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKT---------------LASWNAMIS 409 (707)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~---------------~~~~~~li~ 409 (707)
++++.|...+.......+. +...+..+...|.+.|++++|...|++.. ..+ ...|..+..
T Consensus 127 ~~~~~A~~~~~~a~~~~p~--~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLE--QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333322 67788999999999999999999998763 222 356666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhH
Q 043060 410 GLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMI 463 (707)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 463 (707)
+|.+.|++++|+..|++.++ +.|+. ..+..+..++...|++++|...|+.+.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 257 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVL 257 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666666666666666 33432 244444444445555555555444444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.5e-06 Score=71.50 Aligned_cols=99 Identities=8% Similarity=-0.133 Sum_probs=68.4
Q ss_pred HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 043060 436 DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGA 513 (707)
Q Consensus 436 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~ 513 (707)
...+..+...+...|++++|...|+...+. .+.+...|..+..+|...|++++|...+++. ...|+ ...|..+...
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 345555566666666666666666665542 2234566666777777777777777777765 33444 7788888888
Q ss_pred HHhcCChhHHHHHHHHHHccCCC
Q 043060 514 CRVHGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~p~ 536 (707)
+...|++++|...+++++++.|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888776
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00013 Score=72.04 Aligned_cols=192 Identities=10% Similarity=0.021 Sum_probs=130.8
Q ss_pred chHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcC--CHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCC-HHHHHHH
Q 043060 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG--NIKAAEQVFDGMG---YKTLASWNAMISGLAMHGK-ADKALSL 423 (707)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~ 423 (707)
++.+..++..+....+. +..+|+.-.-.+.+.| .++++..+++++. .+|..+|+--.-.+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK--ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK--SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 45666667777776665 6777777666666777 4788888888763 4577788877777777777 5888888
Q ss_pred HHHHHHCCCCCCH-hHHHHHHHHHhcc--------------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc---
Q 043060 424 FSRMIGEGLQPDD-ITFVGVLSACNHA--------------GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA--- 485 (707)
Q Consensus 424 ~~~m~~~g~~p~~-~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--- 485 (707)
++++++ ..|+. ..++.....+.+. +.++++++++..... -.+-|...|+-+-..+.+.
T Consensus 168 ~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 168 TDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCc
Confidence 888887 44443 3555444444333 457888888888775 3344667777665555554
Q ss_pred --------CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 486 --------GLFDEAEALLKTM-EMKPDAAIWTSLLGAC-----RVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 486 --------g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
+.++++++.++++ ...||. .|..+..+. ...|..++....+.++.+++|...+-|..+...+
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 4578888888886 567774 444322222 2357788899999999999998777776665444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.23 E-value=9.4e-07 Score=73.62 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=61.4
Q ss_pred HcCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHH
Q 043060 484 RAGLFDEAEALLKTM-EM---KPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVA 558 (707)
Q Consensus 484 ~~g~~~~A~~~~~~~-~~---~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 558 (707)
..|++++|+..|++. .. .|+ ..+|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 356777777777765 33 244 5677778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhC
Q 043060 559 TIRTRLNDK 567 (707)
Q Consensus 559 ~~~~~m~~~ 567 (707)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888877654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=6.2e-06 Score=69.01 Aligned_cols=98 Identities=11% Similarity=-0.013 Sum_probs=68.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 043060 439 FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRV 516 (707)
Q Consensus 439 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~ 516 (707)
+..+...+.+.|++++|...|+.+.+. .+.+...|..+..++.+.|++++|+..+++. ...|+ ...|..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344455666677777777777776652 2335667777777888888888888888775 45565 7788888888999
Q ss_pred cCChhHHHHHHHHHHccCCCCc
Q 043060 517 HGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
.|++++|...++++++.+|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999888654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.19 E-value=9.9e-06 Score=66.16 Aligned_cols=99 Identities=13% Similarity=0.032 Sum_probs=70.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP---DAAIWTSLLGA 513 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~ 513 (707)
.+..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4555566666677777777777666552 2235566677777777888888888877775 3334 46778888888
Q ss_pred HHhc-CChhHHHHHHHHHHccCCCCc
Q 043060 514 CRVH-GRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 514 ~~~~-g~~~~A~~~~~~~~~~~p~~~ 538 (707)
+... |++++|.+.++++++..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888999999888888888654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.1e-05 Score=85.15 Aligned_cols=145 Identities=11% Similarity=0.024 Sum_probs=106.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMV 479 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 479 (707)
....|..+...|.+.|++++|+..|++.++ +.|+...+ .-+...+ ... .....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~-~~~--------~~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL-----------SEKESKA-SES--------FLLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC-----------CHHHHHH-HHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC-----------ChHHHHH-HHH--------HHHHHHHHHH
Confidence 345788888889999999999999998887 34443210 0011110 000 1235677788
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhH
Q 043060 480 DLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 557 (707)
.+|.+.|++++|+..+++. ...|+ ...|..+..++...|++++|+..|+++++++|++..++..++.++.+.|+++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998886 45554 888999999999999999999999999999999999999999999999999988
Q ss_pred HH-HHHHHhh
Q 043060 558 AT-IRTRLND 566 (707)
Q Consensus 558 ~~-~~~~m~~ 566 (707)
.+ .++.|..
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 74 4555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=2.3e-06 Score=78.95 Aligned_cols=146 Identities=11% Similarity=-0.015 Sum_probs=81.7
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CCh----------------
Q 043060 341 LPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KTL---------------- 401 (707)
Q Consensus 341 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~---------------- 401 (707)
.......|.++.+++.+......... ....+..+...|.+.|++++|...|++... .+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQ--SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGGCCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 33445566677777666654433322 455678889999999999999999987632 232
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVD 480 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 480 (707)
..|..+..+|...|++++|+..+++.++ ..|+ ...+..+..++...|++++|...|+...+. .+.+...+..+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHH
Confidence 5666666777777777777777777766 3443 335555555666666666666666655542 1123344444444
Q ss_pred HHHHcCCHHHHH
Q 043060 481 LLGRAGLFDEAE 492 (707)
Q Consensus 481 ~~~~~g~~~~A~ 492 (707)
++...|+.+++.
T Consensus 165 ~~~~~~~~~~~~ 176 (198)
T 2fbn_A 165 CVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.16 E-value=5.8e-06 Score=69.84 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-------chhHHH
Q 043060 473 QHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN-------PGAYVL 543 (707)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~ 543 (707)
..+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45667778888888999998888875 3334 47888889999999999999999999999988766 788999
Q ss_pred HHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 544 LSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 544 l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
++.+|...|++++|.+.+++..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999999999999999999988743
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=9.7e-05 Score=79.76 Aligned_cols=167 Identities=9% Similarity=0.029 Sum_probs=130.1
Q ss_pred HHHHHHHHhcCC---CCChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccC-
Q 043060 386 IKAAEQVFDGMG---YKTLASWNAMISGLAMHGK----------ADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAG- 450 (707)
Q Consensus 386 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g- 450 (707)
-++|.+.++++. ..+..+|+.--..+...|+ ++++++.++++.+ ..|... +|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccc
Confidence 355666666553 3455677766666666666 8889999998888 556554 6777777777788
Q ss_pred -CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---------
Q 043060 451 -LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG-LFDEAEALLKTM-EMKPD-AAIWTSLLGACRVH--------- 517 (707)
Q Consensus 451 -~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~--------- 517 (707)
+++++.+.++.+.+. -+-+...|+.-..++.+.| .++++++.++++ ...|+ ...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 779999999998873 3346777888778888888 889999998887 56665 88898888877663
Q ss_pred -----CChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhh
Q 043060 518 -----GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 518 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 556 (707)
+.++++.+.++++++.+|++..+|..+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999998665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=2e-05 Score=82.73 Aligned_cols=164 Identities=9% Similarity=-0.097 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHh----HHHHHHHHHhccCCHHHHHHHHHHhHHh---cCCCC-ChH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEG-LQPDDI----TFVGVLSACNHAGLLDIGRQYFNAMIQD---YKISP-KLQ 473 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~ 473 (707)
++..++..|...|++++|.+.+.++...- ..++.. +.+.+-..+...|+.+++..++...... .+..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667788888888888888888766521 112221 2223333445678888888888766542 12222 245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccC---CCC----c
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM-----E--MKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELE---PEN----P 538 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~-----~--~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---p~~----~ 538 (707)
.+..+...|...|++++|..++++. . .+|. ..++..++..|...|++++|...+++++... +.+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7778899999999999999998875 1 1233 5688889999999999999999999988753 222 2
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 539 GAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
..+..++..+...|++++|...+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4567788889999999999988877753
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-05 Score=68.22 Aligned_cols=100 Identities=13% Similarity=0.072 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 481 (707)
.|..+...+.+.|++++|++.|++.++ +.|+.. .|..+..+|...|++++|++.|+..++.. |+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~---~~---------- 74 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG---RE---------- 74 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HH----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC---cc----------
Confidence 455566666666666666666666665 444432 45555555555555555555555544310 00
Q ss_pred HHHcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 043060 482 LGRAGLFDEAEALLKTMEMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEP 535 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 535 (707)
..++ ..+|..+..++...|++++|++.++++++..|
T Consensus 75 ------------------~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 75 ------------------TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp ------------------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred ------------------cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 0011 23566667777777888888888888777766
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.14 E-value=7.7e-06 Score=69.04 Aligned_cols=105 Identities=8% Similarity=0.034 Sum_probs=58.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC----CCC----HHHHHHHHH
Q 043060 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EM----KPD----AAIWTSLLG 512 (707)
Q Consensus 442 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ll~ 512 (707)
+...+...|++++|...|+...+. .+.+...+..+...|.+.|++++|...+++. .. .++ ..+|..+..
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 333444444444444444444331 1223344444555555555555555555543 11 122 556777777
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
.+...|++++|...++++++..| ++.....+..+..
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 88888888888888888888877 5666666555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.5e-05 Score=70.17 Aligned_cols=93 Identities=18% Similarity=0.139 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC------CCch
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM----EMKPD----AAIWTSLLGACRVHGRLELGESVAKHLLELEP------ENPG 539 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p------~~~~ 539 (707)
.+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444555555566666665555543 00111 44666777777888888888888888776532 1235
Q ss_pred hHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 540 AYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 540 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
++..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677888888899999999888887764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.6e-05 Score=64.89 Aligned_cols=104 Identities=16% Similarity=0.065 Sum_probs=67.3
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 043060 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPK-LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD----AAIWTSLLGACR 515 (707)
Q Consensus 442 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~ 515 (707)
+...+...|++++|...|+.+.+...-.+. ...+..+..+|.+.|++++|.+.+++. ...|+ ..++..+...+.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344455566666666666665543211110 135556667777777777777777765 22333 556777888888
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHH
Q 043060 516 VHGRLELGESVAKHLLELEPENPGAYVLLS 545 (707)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 545 (707)
..|++++|...++++++..|+++.+.....
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 899999999999999998888766554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.8e-05 Score=83.37 Aligned_cols=124 Identities=10% Similarity=0.111 Sum_probs=90.7
Q ss_pred HhccCCHHHHHHHHHHhHHhcC--CC---C-ChHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYK--IS---P-KLQHYGCMVDLLGRAGLFDEAEALLKTM---------EMKPD-AAIWTS 509 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~--~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 509 (707)
+..+|++++|..++++..+... +. | ...+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455666666666655544321 11 1 2246777777788888888887777664 34466 678999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHc-----cCCCCchh---HHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 510 LLGACRVHGRLELGESVAKHLLE-----LEPENPGA---YVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 510 ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
|...|..+|++++|+.+++++++ ++|++|.+ ...|..++...|++++|..++.++++.-.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999986 47777654 45788889999999999999999987653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.5e-05 Score=68.63 Aligned_cols=131 Identities=12% Similarity=0.077 Sum_probs=74.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH----hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHH
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQ-PDD----ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK----LQH 474 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 474 (707)
+..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|...++...+...-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444455555555555555554431000 111 24445555556666666666666655432111111 335
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 043060 475 YGCMVDLLGRAGLFDEAEALLKTM-------EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELE 534 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 534 (707)
+..+...+...|++++|.+.+++. +..+. ..++..+...+...|++++|...+++++++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 556667777777777777777664 11111 4567778888888999999999988887754
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.08 E-value=8.4e-06 Score=72.31 Aligned_cols=123 Identities=13% Similarity=0.073 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHH
Q 043060 401 LASWNAMISGLAMHGKADKALSLFSRMIGEG------LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQH 474 (707)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 474 (707)
...|......+.+.|++++|+..|++.+..- -.|+...+ ..+ .+.+...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~-----~~~~~~~ 65 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL-----DRKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH-----HHTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH-----HHHHHHH
Confidence 3456667777777778888877777776520 01111100 000 0123457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc-hhHHHHHHHh
Q 043060 475 YGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENP-GAYVLLSNMY 548 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~ 548 (707)
|..+..+|.+.|++++|+..+++. ...|+ ...|..+..++...|++++|...++++++++|+++ .....+..+.
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 778888899999999999998885 55565 88999999999999999999999999999999887 4444554443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-05 Score=80.72 Aligned_cols=137 Identities=11% Similarity=0.025 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHH
Q 043060 401 LASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMV 479 (707)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 479 (707)
...|..+...+.+.|++++|+..|++.++ ..|+.. .....+++. ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~--~~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLR--YVEGSR----------AAAEDADGA----------KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhhcCc----------cccChHHHH----------HHHHHHHHHHHHHH
Confidence 44678888888899999999999988876 111110 000111111 1112 456788889
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhH
Q 043060 480 DLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557 (707)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 557 (707)
.+|.+.|++++|++.+++. ...|+ ...|..+..++...|++++|+..++++++++|++..++..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986 66675 889999999999999999999999999999999999999999999988888877
Q ss_pred HH
Q 043060 558 AT 559 (707)
Q Consensus 558 ~~ 559 (707)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.8e-06 Score=70.81 Aligned_cols=93 Identities=12% Similarity=0.054 Sum_probs=78.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC------chhHH
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPEN------PGAYV 542 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 542 (707)
+...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777888888999999999988885 4455 48889999999999999999999999999999998 77888
Q ss_pred HHHHHhhhcCChhhHHHHHHH
Q 043060 543 LLSNMYAGAGRWDDVATIRTR 563 (707)
Q Consensus 543 ~l~~~~~~~g~~~~a~~~~~~ 563 (707)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 899999988888887665443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.05 E-value=3.7e-06 Score=69.93 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=64.9
Q ss_pred cCCHHHHHHHHHHhHHhcC--CCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHH
Q 043060 449 AGLLDIGRQYFNAMIQDYK--ISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGE 524 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~ 524 (707)
.|++++|...|++..+. + -+.+...+..+..+|.+.|++++|++.|++. ...|+ ..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666665531 1 1123456677777788888888888888775 44555 778888888999999999999
Q ss_pred HHHHHHHccCCCCchhHH
Q 043060 525 SVAKHLLELEPENPGAYV 542 (707)
Q Consensus 525 ~~~~~~~~~~p~~~~~~~ 542 (707)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999888876543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.04 E-value=1e-05 Score=81.62 Aligned_cols=149 Identities=10% Similarity=0.006 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 481 (707)
..|..+...+.+.|++++|+..|++.+. ..|+... +...|+.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3566777788888999999999999887 5565542 223344444433221 1367778889
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh-hhcCChhhHH
Q 043060 482 LGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY-AGAGRWDDVA 558 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~ 558 (707)
|.+.|++++|+..+++. ...|+ ...|..+..++...|++++|+..++++++++|+++.++..|..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999885 45564 788999999999999999999999999999999999999888884 4567778888
Q ss_pred HHHHHHhhCCCc
Q 043060 559 TIRTRLNDKGMK 570 (707)
Q Consensus 559 ~~~~~m~~~~~~ 570 (707)
..+++|.+....
T Consensus 320 ~~~~~~l~~~p~ 331 (338)
T 2if4_A 320 EMYKGIFKGKDE 331 (338)
T ss_dssp ------------
T ss_pred HHHHHhhCCCCC
Confidence 899888766543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.03 E-value=5.5e-06 Score=83.64 Aligned_cols=115 Identities=12% Similarity=0.000 Sum_probs=89.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVH 517 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 517 (707)
.+..+...+.+.|++++|...|+...+. .|+... +...|+.+++...+. ..+|..+..++.+.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 3555667788889999999998887653 233221 233444555544332 24788999999999
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 518 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+...
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999876554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.3e-05 Score=69.20 Aligned_cols=115 Identities=17% Similarity=0.054 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-CChHHHHHHHHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKIS-PKLQHYGCMVDL 481 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~ 481 (707)
.+......+.+.|++++|+..|++.++ +.|+...- ++. ... .+...|..+..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~--------------~a~----------~~~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPE--------------EAF----------DHAGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTT--------------SCC----------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcch--------------hhh----------hhccchHHHHHHHHHH
Confidence 455566667777888888888888777 45541100 000 000 012255555566
Q ss_pred HHHcCCHHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHH
Q 043060 482 LGRAGLFDEAEALLKTM--------EMKPD-AAIW----TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVL 543 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~--------~~~p~-~~~~----~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 543 (707)
+.+.|++++|+..+++. .+.|+ ...| .....++...|++++|+..|+++++++|++...+..
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 66666666666655553 34887 7788 999999999999999999999999999988765433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=7e-05 Score=78.45 Aligned_cols=158 Identities=9% Similarity=0.012 Sum_probs=119.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh
Q 043060 409 SGLAMHGKADKALSLFSRMIGEGLQPD----------------DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKL 472 (707)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 472 (707)
..+.+.|++++|++.|.++.+..-... ...+..+...|...|++++|.+++..+.+..+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 446678899999999999887422211 1136788899999999999999999887654433333
Q ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccC------
Q 043060 473 Q----HYGCMVDLLGRAGLFDEAEALLKTM-------EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELE------ 534 (707)
Q Consensus 473 ~----~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------ 534 (707)
. ..+.+...+...|++++|.+++++. +..+. ..++..|...+...|++++|...+++++..-
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2 2334445556678999999988764 23333 6688899999999999999999999987631
Q ss_pred CCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 535 PENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 535 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
|....++..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22345888999999999999999999988764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.94 E-value=4.9e-05 Score=77.51 Aligned_cols=112 Identities=8% Similarity=0.065 Sum_probs=82.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD-AAIWTSLLGACRV 516 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~ 516 (707)
.+..+...+.+.|++++|...|+++.+.. +. .......+++. ...|. ..+|..+..++.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~----------~~~~~~~~~~~------~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EG----------SRAAAEDADGA------KLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HH----------HHHHSCHHHHG------GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hc----------CccccChHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 45566666667777777777776665410 00 00000111111 12333 6789999999999
Q ss_pred cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+..
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999988754
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.94 E-value=3.2e-05 Score=62.01 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 503 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|++.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 37889999999999999999999999999999999999999999999999999999999988764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.5e-05 Score=64.53 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=67.1
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 490 EAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 490 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
+|++.|++. ...|+ ...|..+...+...|++++|+..++++++.+|+++.+|..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666654 45565 7889999999999999999999999999999999999999999999999999999999988764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=6.8e-06 Score=70.84 Aligned_cols=87 Identities=16% Similarity=0.147 Sum_probs=70.0
Q ss_pred HHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC----------hhHHHHHHHHHHccCCCCchhHHHHHHHhhh
Q 043060 483 GRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGR----------LELGESVAKHLLELEPENPGAYVLLSNMYAG 550 (707)
Q Consensus 483 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 550 (707)
.|.+.+++|.+.+++. ...|+ ...|..+..++...++ +++|+..|+++++++|++..+|..++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3455677777777664 44554 6777777777777665 4599999999999999999999999999998
Q ss_pred cC-----------ChhhHHHHHHHHhhCCC
Q 043060 551 AG-----------RWDDVATIRTRLNDKGM 569 (707)
Q Consensus 551 ~g-----------~~~~a~~~~~~m~~~~~ 569 (707)
.| ++++|++.|++..+...
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 75 89999999999988654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.91 E-value=3.7e-05 Score=60.02 Aligned_cols=81 Identities=25% Similarity=0.326 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 472 LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
...+..+...|.+.|++++|++.+++. ...| +..+|..+...+...|++++|...++++++++|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456677778888888888888888875 3344 47788889999999999999999999999999999999999888887
Q ss_pred hcC
Q 043060 550 GAG 552 (707)
Q Consensus 550 ~~g 552 (707)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0001 Score=77.68 Aligned_cols=111 Identities=13% Similarity=0.086 Sum_probs=62.9
Q ss_pred CchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CC---------------hHHHHHHHHH
Q 043060 349 ALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KT---------------LASWNAMISG 410 (707)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~---------------~~~~~~li~~ 410 (707)
+++.|...+.......+. ....+..+...|.+.|++++|...|++... .+ ...|..+..+
T Consensus 249 ~~~~A~~~~~~~~~~~~~--~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLE--QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333332222 566788899999999999999999987631 22 3455555555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhH
Q 043060 411 LAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMI 463 (707)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 463 (707)
|.+.|++++|+..|++.++ +.|+. ..|..+..++...|++++|...|+.+.
T Consensus 327 ~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al 378 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 5566666666666655555 33332 234444444444444444444444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00014 Score=76.50 Aligned_cols=114 Identities=13% Similarity=0.069 Sum_probs=89.2
Q ss_pred HHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc-----cCCCCc---hhHH
Q 043060 481 LLGRAGLFDEAEALLKTM---------EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLE-----LEPENP---GAYV 542 (707)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~ 542 (707)
.+..+|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|++| .++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 466789999999998874 23355 66899999999999999999999999986 356655 4688
Q ss_pred HHHHHhhhcCChhhHHHHHHHHhhCCCccCCcccEEeECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHH
Q 043060 543 LLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612 (707)
Q Consensus 543 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 612 (707)
.|+.+|...|++++|..++++..+.-.+ .-...||...++..++......+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998753211 012379998888777776665554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=4.5e-05 Score=65.71 Aligned_cols=74 Identities=11% Similarity=0.133 Sum_probs=49.6
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCCh
Q 043060 488 FDEAEALLKTM-EMKPD-AAIWTSLLGACRVH-----------GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554 (707)
Q Consensus 488 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 554 (707)
+++|+..|++. .+.|+ ..+|..+..+|... |++++|++.|+++++++|++...... +. ..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a-l~------~~ 134 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS-LE------MT 134 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH-HH------HH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH-HH------HH
Confidence 34777777764 55665 66777777777766 48999999999999999987533222 22 22
Q ss_pred hhHHHHHHHHhhCC
Q 043060 555 DDVATIRTRLNDKG 568 (707)
Q Consensus 555 ~~a~~~~~~m~~~~ 568 (707)
++|.+++-.+-..+
T Consensus 135 ~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 135 AKAPQLHAEAYKQG 148 (158)
T ss_dssp HTHHHHHHHHHHSS
T ss_pred HhCHhccCcccccc
Confidence 45555555554443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00023 Score=73.79 Aligned_cols=116 Identities=14% Similarity=0.151 Sum_probs=87.7
Q ss_pred HHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc-----cCCCCc---hh
Q 043060 479 VDLLGRAGLFDEAEALLKTM---------EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLE-----LEPENP---GA 540 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~ 540 (707)
+.-+.++|++++|++++++. +..|+ ..+++.|+.+|...|++++|+.+++++++ ++|++| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455678888888887764 12233 56888999999999999999999999986 355555 46
Q ss_pred HHHHHHHhhhcCChhhHHHHHHHHhhCCCccCCcccEEeECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHH
Q 043060 541 YVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLE 612 (707)
Q Consensus 541 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 612 (707)
+..|+.+|...|++++|..++++..+.-.. .-...||...++...|.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999998753210 012479999998888888777665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0005 Score=74.15 Aligned_cols=151 Identities=11% Similarity=0.033 Sum_probs=123.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCC----------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 043060 415 GKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGL----------LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLG 483 (707)
Q Consensus 415 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 483 (707)
...++|++.+++++. ..|+.. .|+.--.++.+.|+ ++++.+.++.+.+. .+.+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 346789999999999 788876 45554555555566 99999999999873 4457788888888888
Q ss_pred HcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHHccCCCCchhHHHHHHHhhhc-------
Q 043060 484 RAG--LFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHG-RLELGESVAKHLLELEPENPGAYVLLSNMYAGA------- 551 (707)
Q Consensus 484 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 551 (707)
+.| ++++|++.++++ ...| +..+|+.-..+....| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999997 4455 4889999999999999 899999999999999999999999999998774
Q ss_pred -------CChhhHHHHHHHHhhCCC
Q 043060 552 -------GRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 552 -------g~~~~a~~~~~~m~~~~~ 569 (707)
++++++.+++++..+...
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC
Confidence 567888888888775443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00027 Score=55.33 Aligned_cols=69 Identities=17% Similarity=0.075 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 502 PDAAIWTSLLGACRVHGR---LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 502 p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
+|+..|..+..++...++ .++|...++++++++|+++.+...++..+.+.|++++|+..|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 457888888888876555 799999999999999999999999999999999999999999999987663
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00019 Score=58.34 Aligned_cols=67 Identities=10% Similarity=0.037 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 503 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+...|..+...+...|++++|...++++++.+|+++.++..++.+|...|++++|++.+++..+...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4678889999999999999999999999999999999999999999999999999999999987554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00033 Score=57.52 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=56.1
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 455 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
+...|+...+ ..+.+...+..+...|.+.|++++|++.+++. ...|+ ...|..+...+...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555543 22235566777777777777777777777775 34454 67788888888888888888888888888
Q ss_pred cCCC
Q 043060 533 LEPE 536 (707)
Q Consensus 533 ~~p~ 536 (707)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0011 Score=56.60 Aligned_cols=86 Identities=7% Similarity=-0.121 Sum_probs=45.8
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhh----cCC
Q 043060 482 LGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRV----HGRLELGESVAKHLLELEPENPGAYVLLSNMYAG----AGR 553 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~ 553 (707)
|...+..++|.+.|++.-..-+...+..|...|.. .+++++|.+.++++.+. .++.++..|+.+|.. .++
T Consensus 35 y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d 112 (138)
T 1klx_A 35 SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN 112 (138)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcC
Confidence 33333334444444433111234444555555544 45666666666666554 345566666666666 666
Q ss_pred hhhHHHHHHHHhhCCC
Q 043060 554 WDDVATIRTRLNDKGM 569 (707)
Q Consensus 554 ~~~a~~~~~~m~~~~~ 569 (707)
+++|.+.+++..+.|.
T Consensus 113 ~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 113 EKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCC
Confidence 6666666666666554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0004 Score=71.81 Aligned_cols=82 Identities=9% Similarity=0.040 Sum_probs=65.3
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc-----cCCCCc---hhHHHHHH
Q 043060 485 AGLFDEAEALLKTM---------EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLE-----LEPENP---GAYVLLSN 546 (707)
Q Consensus 485 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~~l~~ 546 (707)
.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|++| .+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45667777766653 23344 56888999999999999999999999986 356555 46889999
Q ss_pred HhhhcCChhhHHHHHHHHhh
Q 043060 547 MYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 547 ~~~~~g~~~~a~~~~~~m~~ 566 (707)
+|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999876
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00062 Score=52.78 Aligned_cols=65 Identities=25% Similarity=0.361 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 504 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
...|..+...+...|++++|+..++++++.+|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 56788899999999999999999999999999999999999999999999999999999988754
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0012 Score=56.34 Aligned_cols=113 Identities=9% Similarity=-0.108 Sum_probs=92.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH----cCCHH
Q 043060 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR----AGLFD 489 (707)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~ 489 (707)
.+++++|++.|++..+.| .|+.. +...|...+.+++|.++|+...+. .+...+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 356889999999999877 33333 667777788899999999998764 467788888889988 89999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCC
Q 043060 490 EAEALLKTMEMKPDAAIWTSLLGACRV----HGRLELGESVAKHLLELEP 535 (707)
Q Consensus 490 ~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p 535 (707)
+|.+.|++.-..-++..+..|...|.. .++.++|...++++.+.+.
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999987333578888889999988 8999999999999998864
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0039 Score=61.74 Aligned_cols=145 Identities=13% Similarity=0.049 Sum_probs=76.1
Q ss_pred CCCChHHHHHHHHHHH--HcCC---HHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 043060 397 GYKTLASWNAMISGLA--MHGK---ADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP 470 (707)
Q Consensus 397 ~~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 470 (707)
...+...|...+.+.. ..++ ..+|+.+|++.++ ..|+.. .+..+..++.. . ...+. .
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~----------~----~~~~~-~ 252 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV----------R----HSQHP-L 252 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH----------H----HHHSC-C
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH----------H----hccCC-C
Confidence 3446777877776643 3333 5789999999998 788754 44444444430 0 00010 0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
+..... ....|.+....+...| ++.+|..+...+...|++++|...++++++++| +...|..++.++.
T Consensus 253 ~~~~~~----------~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~ 321 (372)
T 3ly7_A 253 DEKQLA----------ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYE 321 (372)
T ss_dssp CHHHHH----------HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred chhhHH----------HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 100000 0112222222222222 355555555555555666666666666666664 3455556666666
Q ss_pred hcCChhhHHHHHHHHhhCCC
Q 043060 550 GAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 550 ~~g~~~~a~~~~~~m~~~~~ 569 (707)
-.|++++|.+.+++....+.
T Consensus 322 ~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 322 MKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HTTCHHHHHHHHHHHHHHSC
T ss_pred HCCCHHHHHHHHHHHHhcCC
Confidence 66666666666666655443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0015 Score=67.56 Aligned_cols=94 Identities=10% Similarity=-0.029 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 043060 449 AGLLDIGRQYFNAMIQDYK--ISPK----LQHYGCMVDLLGRAGLFDEAEALLKTM---------EMKPD-AAIWTSLLG 512 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~ 512 (707)
.|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3455555555555443211 1111 245667777777777777777777664 34566 678999999
Q ss_pred HHHhcCChhHHHHHHHHHHc-----cCCCCchhHH
Q 043060 513 ACRVHGRLELGESVAKHLLE-----LEPENPGAYV 542 (707)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 542 (707)
.|..+|++++|+.+++++++ ++|++|.+-.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 99999999999999999987 4788775443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0022 Score=54.52 Aligned_cols=90 Identities=16% Similarity=0.102 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHccC-C-CCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCccCCccc
Q 043060 502 PDAAIWTSLLGACRVHG---RLELGESVAKHLLELE-P-ENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCS 576 (707)
Q Consensus 502 p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 576 (707)
++..+.-.+..++.+.+ ++++|+.+++.+++.+ | ++...++.|+-+|.+.|++++|+++++.+.+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie-------- 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE-------- 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------
Confidence 56777778888888877 6678999999998888 6 457788889999999999999999999887633
Q ss_pred EEeECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCc
Q 043060 577 SIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFV 617 (707)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 617 (707)
|...++......+.+.+.+.|.+
T Consensus 102 ------------------P~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 102 ------------------PQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ------------------CCCHHHHHHHHHHHHHHHHhhHH
Confidence 33445555556667777777765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0027 Score=65.72 Aligned_cols=71 Identities=14% Similarity=0.036 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc-----cCCCC
Q 043060 473 QHYGCMVDLLGRAGLFDEAEALLKTM---------EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLE-----LEPEN 537 (707)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~ 537 (707)
.+++.|..+|...|++++|+.++++. +..|+ ..+++.|...|..+|++++|+.+++++++ ++|++
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H 409 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555666666666666666666553 34466 66889999999999999999999999986 47887
Q ss_pred chhHHH
Q 043060 538 PGAYVL 543 (707)
Q Consensus 538 ~~~~~~ 543 (707)
|.+-..
T Consensus 410 p~~~~~ 415 (429)
T 3qwp_A 410 SLIEDL 415 (429)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 765443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0016 Score=51.52 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=59.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-HH-HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCCh
Q 043060 478 MVDLLGRAGLFDEAEALLKTM-EMKPD-AA-IWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 554 (707)
....+.+.|++++|++.+++. ...|+ .. .|..+...+...|++++|+..++++++++|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 455677888888888888875 44554 66 88888999999999999999999999999988877632 444
Q ss_pred hhHHHHHHHH
Q 043060 555 DDVATIRTRL 564 (707)
Q Consensus 555 ~~a~~~~~~m 564 (707)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00019 Score=72.25 Aligned_cols=433 Identities=12% Similarity=0.076 Sum_probs=231.3
Q ss_pred chhhhhhhchhhcccCCCChHHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 043060 61 TQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSC 140 (707)
Q Consensus 61 ~~~~~~~l~~~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 140 (707)
.+.+|..|- .++.+.|++.+|+..|-+. .|...|..+|.+..+.|.+++-+..+...++. .-++..=+.|+-+|
T Consensus 53 ~p~VWs~Lg--kAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLA--KAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHH--HHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHH
T ss_pred CccHHHHHH--HHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHH
Confidence 445666666 6777777777776655443 35555677777777777777777766544433 22344445677777
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCCC------------------------CCe
Q 043060 141 AKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSSL------------------------RDA 196 (707)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~------------------------~~~ 196 (707)
++.+++.+-.+.+. .|+..-...+.+-+...|.++.|.-+|..+.. .++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 77776655443332 35555556666667777777777777765531 256
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHH
Q 043060 197 VSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALID 276 (707)
Q Consensus 197 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 276 (707)
.+|-.+-.+|...+.+.-|.-+--.+.. ... .+..++.-|-..|.+++-..+++...... ......++-|.-
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIv-had------eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVV-HAD------ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSS------CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcc-cHH------HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 6777777777777776655433222211 011 12233444566677776666666554221 235677888888
Q ss_pred HHHhcCCHHHHHHHHHhcC----CC-------ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHh
Q 043060 277 MYSKCGDLVKARDLFESIE----KR-------DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACA 345 (707)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 345 (707)
.|+|-. .++-.+-++..- -| ....|.-++-.|.+-.+++.|... |.+. .|+...-........
T Consensus 272 LYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~ 345 (624)
T 3lvg_A 272 LYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIIT 345 (624)
T ss_dssp HHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGG
T ss_pred HHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHH
Confidence 888874 333333333221 12 445688899999988888877543 3221 111111111111122
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhh-------------HHHhcCCHHHHHHHHhcCCCCChHHHH-HHHHHH
Q 043060 346 YLGALDLGKWIHAYIDKNHQKLNNVSLWTSLID-------------MYAKCGNIKAAEQVFDGMGYKTLASWN-AMISGL 411 (707)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~-------------~y~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~ 411 (707)
+..+.+.--+....-++..+ ...+-|+. ++.+.|++.-....+......|...-| ++-..|
T Consensus 346 KVaN~EiyYKAi~FYL~e~P-----~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~ 420 (624)
T 3lvg_A 346 KVANVELYYRAIQFYLEFKP-----LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLF 420 (624)
T ss_dssp GCSCSHHHHHHHHHHTTSCC-----TTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHH
T ss_pred HcchHHHHHHHHHHHHHhCh-----HHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 23333322222222222221 12333333 444444444444444444455544433 344456
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 043060 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491 (707)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (707)
....|++.-. . -+..|-+-..+.-|.++ +++ +-.+.-..-...|.+.++++++
T Consensus 421 IEEEDy~~LR----~---------------SId~ydNFD~i~LA~rL-----EkH---eL~eFRrIAA~LYkkn~rw~qs 473 (624)
T 3lvg_A 421 ITEEDYQALR----T---------------SIDAYDNFDNISLAQRL-----EKH---ELIEFRRIAAYLFKGNNRWKQS 473 (624)
T ss_dssp HHTTCCHHHH----H---------------TTSSCCCSCTTHHHHHH-----HTC---SSHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhhHHHHH----H---------------HHHHhccccHHHHHHHH-----hhC---chHHHHHHHHHHHHhcccHHHH
Confidence 6666654221 1 11122222222222221 111 1222223344568888999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHH
Q 043060 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATI 560 (707)
Q Consensus 492 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 560 (707)
+++.++=+.-.| .+......|+.+.++++++-.++.+. ...+...+-.|...=+.|-+.++
T Consensus 474 i~l~KkDklykD------AietAa~S~~~elaeeLL~yFv~~g~--~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 474 VELCKKDSLYKD------AMQYASESKDTELAEELLQWFLQEEK--RECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp SSCSSTTCCTTG------GGTTTTTCCCTTHHHHHHHHHHHHCS--THHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHhcccHHH------HHHHHHHcCCHHHHHHHHHHHHHcCc--hHHHHHHHHHHhhccChHHHHHH
Confidence 887665333223 23345677888888888888777653 35777777777777777766654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0018 Score=51.53 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 400 TLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
+...|..+...|...|++++|+..|++.++ ..|+. ..|..+..++...|++++|.+.|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445566666666666666666666666665 33432 3555566666666666666666665543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0014 Score=51.82 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=55.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCch-hHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 509 SLLGACRVHGRLELGESVAKHLLELEPENPG-AYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 509 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.....+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3456778899999999999999999999999 999999999999999999999999987654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.039 Score=44.91 Aligned_cols=140 Identities=11% Similarity=0.085 Sum_probs=98.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 043060 412 AMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEA 491 (707)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (707)
.-.|..++..++..+... ..+..-|+.++.-....-+-+-..+.++.+-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 345777777777777665 223445666665555555666666666665443222 234555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 492 EALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 492 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
..-+-.++ .+......-++....+|+-+.-.+++..++.-++.+|.....++++|.+.|+..+|.+++.+.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55555543 245556677888899999999999999987777778999999999999999999999999999999984
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.12 Score=58.63 Aligned_cols=154 Identities=13% Similarity=0.180 Sum_probs=95.1
Q ss_pred HHHHhCCChhHHHH-HHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Q 043060 204 TGYASRGYLDDARQ-LFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCG 282 (707)
Q Consensus 204 ~~~~~~g~~~~A~~-l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 282 (707)
......+++++|.+ ++..+ |+...+..++..+.+.|..+.|.++.+. +. .-.......|
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i--------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~ 666 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV--------EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVG 666 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC--------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcC--------CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcC
Confidence 34445777777776 54333 1122235666666677777776655421 11 1134557789
Q ss_pred CHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHH
Q 043060 283 DLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDK 362 (707)
Q Consensus 283 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 362 (707)
++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....+-+....
T Consensus 667 ~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 667 QLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp CHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999887663 567899999999999999999999998754 23344444446666655555444444
Q ss_pred hCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhc
Q 043060 363 NHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDG 395 (707)
Q Consensus 363 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 395 (707)
.|. ++.-..+|.+.|++++|.+++.+
T Consensus 736 ~~~-------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 736 TGK-------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TTC-------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCc-------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 332 23344456667777777666543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0075 Score=57.15 Aligned_cols=87 Identities=16% Similarity=0.235 Sum_probs=73.4
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHHccCCCC-chhHHHHHHHhhhc-CChhh
Q 043060 488 FDEAEALLKTM-EMKPD---AAIWTSLLGACRV-----HGRLELGESVAKHLLELEPEN-PGAYVLLSNMYAGA-GRWDD 556 (707)
Q Consensus 488 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 556 (707)
..+|...+++. .+.|+ ...|..|+..|.. -|+.++|++.|+++++++|+. ..+++.+++.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666664 56776 6689999999988 499999999999999999974 99999999999985 99999
Q ss_pred HHHHHHHHhhCCCccCCc
Q 043060 557 VATIRTRLNDKGMKKVPG 574 (707)
Q Consensus 557 a~~~~~~m~~~~~~~~~~ 574 (707)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999988765565
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.02 Score=56.74 Aligned_cols=39 Identities=13% Similarity=-0.101 Sum_probs=34.7
Q ss_pred HHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 530 LLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 530 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
.+..+|.++.+|..++..+...|++++|...++++.+.+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 345679999999999999988999999999999999876
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.016 Score=45.05 Aligned_cols=69 Identities=16% Similarity=0.096 Sum_probs=56.4
Q ss_pred CCChHHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 043060 469 SPKLQHYGCMVDLLGRAGL---FDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 537 (707)
+.+...+..+..++...++ .++|..++++. ...|+ +..+..+...+...|++++|+..|+++++.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3567777888888765555 68999998886 56676 7788888889999999999999999999999874
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.087 Score=59.76 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=26.2
Q ss_pred HhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043060 381 AKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMI 428 (707)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 428 (707)
..+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.
T Consensus 663 l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 44556666665555442 34556666666666666666666666553
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.032 Score=44.49 Aligned_cols=73 Identities=21% Similarity=0.158 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-----C---C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHH
Q 043060 472 LQHYGCMVDLLGRAGLFDEAEALLKTM-----E---M-KPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542 (707)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~-----~---~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 542 (707)
..-+-.|...+.+.|+++.|...++.. + . .+...++..|..++.+.|+++.|...++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334445666666666666666666653 1 1 123678899999999999999999999999999999877655
Q ss_pred HH
Q 043060 543 LL 544 (707)
Q Consensus 543 ~l 544 (707)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 54
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.15 Score=44.39 Aligned_cols=129 Identities=15% Similarity=0.143 Sum_probs=77.7
Q ss_pred hHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHH
Q 043060 378 DMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457 (707)
Q Consensus 378 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 457 (707)
+....+|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... |..+.-.|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445678888888777665 4566788888888888888888888876653 3444445555666665554
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043060 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHL 530 (707)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 530 (707)
+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|.... ....+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 44433221 1 123334445567888888888777654332221 123355566666665544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.033 Score=47.32 Aligned_cols=88 Identities=17% Similarity=-0.033 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhHHH
Q 043060 452 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG---LFDEAEALLKTM-EMK-P--DAAIWTSLLGACRVHGRLELGE 524 (707)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~A~ 524 (707)
+..+++.|.+..+ .-.++..+.-.+..++.+.+ +.++++.++++. ... | +...+-.|.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 3444455554443 22255566556666666666 455677666664 222 4 2556667788899999999999
Q ss_pred HHHHHHHccCCCCchhH
Q 043060 525 SVAKHLLELEPENPGAY 541 (707)
Q Consensus 525 ~~~~~~~~~~p~~~~~~ 541 (707)
+.++.+++.+|+|..+.
T Consensus 92 ~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHhcCCCCHHHH
Confidence 99999999999886543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.043 Score=44.79 Aligned_cols=65 Identities=9% Similarity=-0.084 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHhcCChhH---HHHHHHHHHccC-C-CCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 502 PDAAIWTSLLGACRVHGRLEL---GESVAKHLLELE-P-ENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 502 p~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
|+..+--.+..++.+..+... ++.+++.++..+ | ......+.|+-++.+.|++++|.++.+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444445555555443333 555555555554 3 2344555666666666666666666666554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.88 Score=39.59 Aligned_cols=128 Identities=15% Similarity=0.166 Sum_probs=72.1
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHH
Q 043060 277 MYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWI 356 (707)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 356 (707)
....+|+++.|.++.+.+ .+...|..+.....+.|+++-|.+.|.+..+ |..+.-.|...|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345667777777776665 3566777777777777887777777777643 23333344445555555444
Q ss_pred HHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043060 357 HAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRM 427 (707)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 427 (707)
-+.....|. ++.-...+.-.|+++++.++|.+...-.. -+......|..+.|.++.+++
T Consensus 83 a~iA~~~g~-------~n~af~~~l~lGdv~~~i~lL~~~~r~~e-----A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTRED-------FGSMLLNTFYNNSTKERSSIFAEGGSLPL-----AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHTTC-------HHHHHHHHHHHTCHHHHHHHHHHTTCHHH-----HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHCcc-------HHHHHHHHHHcCCHHHHHHHHHHCCChHH-----HHHHHHHcCcHHHHHHHHHHh
Confidence 444444332 33444445566777777777665433111 111122345566666665544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=3.4 Score=44.35 Aligned_cols=254 Identities=9% Similarity=-0.025 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhcc
Q 043060 268 LHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYL 347 (707)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 347 (707)
...-+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|....+.+-..| .........++..+...
T Consensus 72 ~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 72 RTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Confidence 34445556667777777777776665 33344444455666677777777777666665444 22333444555555544
Q ss_pred CCchHHH--HHHHHHHHhCCC-----------CCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChH---HHHHHHHHH
Q 043060 348 GALDLGK--WIHAYIDKNHQK-----------LNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLA---SWNAMISGL 411 (707)
Q Consensus 348 ~~~~~a~--~~~~~~~~~~~~-----------~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~ 411 (707)
|.+.... +=...+...+.. +........++..+.+-. .+....... .++.. .+..-+.-+
T Consensus 150 g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~---~~~~~~~~~-~~~~~~~~~~~~~~~rl 225 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPN---TVLTFARTT-GATDFTRQMAAVAFASV 225 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGG---GHHHHHHHS-CCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChH---hHHHHHhcc-CCChhhHHHHHHHHHHH
Confidence 4432211 111111111100 001111122222222111 111111111 11111 111112223
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHhHH----HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 043060 412 AMHGKADKALSLFSRMIGEGLQPDDITF----VGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL 487 (707)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 487 (707)
++ .+.+.|..+|......+ ..+.... ..+.......+...++...+...... .++.....-.+....+.|+
T Consensus 226 ar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d 300 (618)
T 1qsa_A 226 AR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGD 300 (618)
T ss_dssp HH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTC
T ss_pred Hh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCC
Confidence 33 37788888888876532 2232222 22222333445355566666654332 2333333334444557789
Q ss_pred HHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 488 FDEAEALLKTMEMKP-D-AAIWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 488 ~~~A~~~~~~~~~~p-~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
++.|...|+.|+..+ + ....-=+..+....|+.++|...|+++.+
T Consensus 301 ~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999999886443 2 22122244466778888889888888875
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.43 Score=39.60 Aligned_cols=91 Identities=8% Similarity=0.029 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHccCCC-CchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCccCCccc
Q 043060 501 KPDAAIWTSLLGACRVHG---RLELGESVAKHLLELEPE-NPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKKVPGCS 576 (707)
Q Consensus 501 ~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 576 (707)
.|+..+--.+..++.+.. +..+++.+++.++..+|. .....+.|+-++.+.|++++|.++.+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e-------- 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-------- 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--------
Confidence 355555556666666654 345677788887777763 44566778888888888888888888777632
Q ss_pred EEeECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCCc
Q 043060 577 SIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFV 617 (707)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 617 (707)
|...++...-..+.++|.+.|.+
T Consensus 108 ------------------P~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 108 ------------------RNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ------------------CCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ------------------CCcHHHHHHHHHHHHHHHHhchh
Confidence 33344444445566677777754
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.78 E-value=0.097 Score=41.57 Aligned_cols=67 Identities=13% Similarity=-0.014 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccC-------CCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 503 DAAIWTSLLGACRVHGRLELGESVAKHLLELE-------PENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 503 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
+..-...|+..+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|..++++..+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34556678899999999999999999999752 34567899999999999999999999999987443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.94 E-value=0.0054 Score=61.92 Aligned_cols=238 Identities=12% Similarity=0.128 Sum_probs=151.6
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHH
Q 043060 164 DPFVHTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSAC 243 (707)
Q Consensus 164 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~ 243 (707)
.+.+|+.|..++.+.+++.+|..-|= +..|...|..+|....+.|.+++-+..+.... +..- +...=+.|+-+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaR--k~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMAR--KKAR--ESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTS--TTCC--STTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHhc--ccccHHHHHHHH
Confidence 34567777777777777777665553 33466677777777777777777777776652 2222 233334677777
Q ss_pred hccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC------------------------CCh
Q 043060 244 AHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEK------------------------RDV 299 (707)
Q Consensus 244 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~ 299 (707)
++.+++.+-++++. .||..-.....+-+...|.++.|.-+|..+.. .++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 77777655433321 34555555666667777777777777766542 266
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhH
Q 043060 300 ISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379 (707)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 379 (707)
.+|-.+-.+|...+.+.-|.-.--.+. +.|| .+..++..|-..|.+++-..+++.-. |.+......++-|.-.
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaIL 272 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAIL 272 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHH
Confidence 788888888888888776644433333 1222 22344556777788888777777655 4444478889999999
Q ss_pred HHhcCCHHHHHHHHhc----CCCC-------ChHHHHHHHHHHHHcCCHHHHHH
Q 043060 380 YAKCGNIKAAEQVFDG----MGYK-------TLASWNAMISGLAMHGKADKALS 422 (707)
Q Consensus 380 y~~~g~~~~A~~~~~~----~~~~-------~~~~~~~li~~~~~~g~~~~A~~ 422 (707)
|+|- ++++-.+-++. +.-| ....|..++-.|.+..+++.|..
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 9876 34444444443 2222 33469999999999888887754
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.61 E-value=0.57 Score=38.16 Aligned_cols=90 Identities=17% Similarity=-0.033 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhHH
Q 043060 451 LLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE---AEALLKTM-EMK-P--DAAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~A 523 (707)
.+..+.+-|...... +. ++..+--.+..++.+.....+ ++.+++.. ... | .....-.|.-++.+.|+++.|
T Consensus 16 ~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 334444455544332 22 555555556666777666555 67777765 222 4 234455677789999999999
Q ss_pred HHHHHHHHccCCCCchhHH
Q 043060 524 ESVAKHLLELEPENPGAYV 542 (707)
Q Consensus 524 ~~~~~~~~~~~p~~~~~~~ 542 (707)
.+.++.+++.+|+|..+..
T Consensus 94 ~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHH
Confidence 9999999999999875443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.47 Score=44.97 Aligned_cols=111 Identities=13% Similarity=0.070 Sum_probs=60.2
Q ss_pred hcCCHHHHHHHHhcCCCCChH--HHHHHHHH-HHHc--CC------HHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHh
Q 043060 382 KCGNIKAAEQVFDGMGYKTLA--SWNAMISG-LAMH--GK------ADKALSLFSRMIGEGLQPD---DITFVGVLSACN 447 (707)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~--~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~ 447 (707)
+.|+..+-.+.+.+....++. .|..++.+ +... |+ ...|...+++.++ +.|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 344555555566666544443 56666553 3332 22 4566666666666 5666 335555555555
Q ss_pred cc-----CCHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHHc-CCHHHHHHHHHh
Q 043060 448 HA-----GLLDIGRQYFNAMIQDYKISP--KLQHYGCMVDLLGRA-GLFDEAEALLKT 497 (707)
Q Consensus 448 ~~-----g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~-g~~~~A~~~~~~ 497 (707)
.. |+.++|.+.|++..+- .| +..++....+.|++. |+.++|.+.+++
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~k 265 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLNNRAGFDEALDR 265 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 53 6666666666666542 23 244555555555553 555555555555
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.21 E-value=0.3 Score=40.88 Aligned_cols=53 Identities=4% Similarity=-0.056 Sum_probs=39.6
Q ss_pred cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.+|+++|.++|+.++.+...-+..|...+..-.+.|+...|++++.+....+.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 36788888888888776555566777777777888888888888888777554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.79 Score=50.27 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=50.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHh
Q 043060 511 LGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLN 565 (707)
Q Consensus 511 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 565 (707)
...|...|+++.|+++++++...-|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4567788999999999999999999999999999999999999999999888874
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.88 E-value=0.51 Score=38.60 Aligned_cols=65 Identities=8% Similarity=-0.031 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHccCCC-CchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 502 PDAAIWTSLLGACRVHG---RLELGESVAKHLLELEPE-NPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 502 p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
|+..+--.+..++.+.. +..+|+.+++.+++.+|. ....+..|+-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444443 334566666666665552 345566666666666666666666666654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.49 E-value=0.96 Score=37.86 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=67.8
Q ss_pred CCCChHHHHHHHHHHHHcCCH------HHHHHHHHHHHHCCCCCCHh----HHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 043060 397 GYKTLASWNAMISGLAMHGKA------DKALSLFSRMIGEGLQPDDI----TFVGVLSACNHAGLLDIGRQYFNAMIQDY 466 (707)
Q Consensus 397 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 466 (707)
...|..+|-..+...-+.|+. ++.+++|++.... ++|+.. .|..+.--|
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrY-------------------- 67 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRF-------------------- 67 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHH--------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHH--------------------
Confidence 345677777777777777777 6666777766653 555421 111111100
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 043060 467 KISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541 (707)
Q Consensus 467 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 541 (707)
. .+...++.++|.++|+.+ ..... ..+|.....--.++|+++.|.+++.+++.+.|......
T Consensus 68 ---------A----~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 68 ---------A----ELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp ---------H----HHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred ---------H----HHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 0 112235666666666665 11111 77888888888889999999999999999888764433
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.94 E-value=19 Score=40.40 Aligned_cols=255 Identities=10% Similarity=0.007 Sum_probs=113.9
Q ss_pred HhccCCchHHHHHHHHHHHcC--CCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC----------hhhHHHHHHHH
Q 043060 243 CAHMGSLELGNWVCSLIEGHG--LGSNLHVTNALIDMYSKCGDLVKARDLFESIEK-RD----------VISWNVMIGGY 309 (707)
Q Consensus 243 ~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~----------~~~~~~li~~~ 309 (707)
....|+.+++..++...+..+ -.+.+.....+.-+...+|..+++..++..... .+ +..-.++.-|+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445666666666655544311 122233444444445555555555555444321 11 11122233333
Q ss_pred HhcCC-HHHHHHHHHHHhhcCCCCChhh--HH--hHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHH--Hh
Q 043060 310 THTSD-YKEALMLFRQMLQSNIEPNDVT--FL--SVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY--AK 382 (707)
Q Consensus 310 ~~~g~-~~~A~~~~~~m~~~g~~p~~~t--~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y--~~ 382 (707)
+-.|. -+++.+.+..+.... +... .. ++.-.+...|+.+....++..+.... +..+...++.+. ..
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~----~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ----HGNITRGLAVGLALIN 536 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHT
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC----cHHHHHHHHHHHHhhh
Confidence 33332 245556665555421 1111 11 11122345566666666666665432 222233333333 34
Q ss_pred cCCHHHHHHHHhcCC-CCChH-HHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHH
Q 043060 383 CGNIKAAEQVFDGMG-YKTLA-SWN---AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQ 457 (707)
Q Consensus 383 ~g~~~~A~~~~~~~~-~~~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 457 (707)
.|+.+.+..+++.+. ..+.. -|. ++..+|+..|+.....++++.+... ...+......+.-+....|+.+.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 537 YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 566666665555543 12322 232 2334566677765555577777653 11111122222223334455555555
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHHcCCH-HHHHHHHHhCCCCCCHHHH
Q 043060 458 YFNAMIQDYKISPKLQHYGCMVDLLGRAGLF-DEAEALLKTMEMKPDAAIW 507 (707)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~~ 507 (707)
+++.+.+ ...|.+..-.++.-+....|.. .+|.+++..+...+|..+-
T Consensus 616 lv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 616 IVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp HTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHH
Confidence 5554443 2234443333444344444443 5666777776445554433
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.90 E-value=29 Score=38.96 Aligned_cols=251 Identities=10% Similarity=0.009 Sum_probs=133.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC----Ch--hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CC---Ch-hh-HHhHHH
Q 043060 276 DMYSKCGDLVKARDLFESIEKR----DV--ISWNVMIGGYTHTSDYKEALMLFRQMLQSNI--EP---ND-VT-FLSVLP 342 (707)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~-~t-~~~ll~ 342 (707)
-+....|+.++++.+++..... +. ..-..+.-|....|..++++.++.......- .- +. .. -..+--
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3456678888899998887642 22 2333445566777777788888877665321 00 01 11 111112
Q ss_pred HHhccCC-chHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC-CCChH--HHHHHHHHHHHcCCHH
Q 043060 343 ACAYLGA-LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG-YKTLA--SWNAMISGLAMHGKAD 418 (707)
Q Consensus 343 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~--~~~~li~~~~~~g~~~ 418 (707)
+.+..|. -+.+...+..++............-+|...|.-.|+-+....++..+. ..+.. -.-.+.-++...|+.+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 2223332 234444444444432110011223344555666788777777766542 12222 2333444455789998
Q ss_pred HHHHHHHHHHHCCCCCCHh-HHH---HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 043060 419 KALSLFSRMIGEGLQPDDI-TFV---GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEAL 494 (707)
Q Consensus 419 ~A~~~~~~m~~~g~~p~~~-t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 494 (707)
.+..+.+.+... .|.. -|. .+.-+|+..|+.....+++..+..+ ...++.....+.-++.-.|+.+.+.++
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888888873 2332 333 3455788999998888899988763 223333333333344446777667777
Q ss_pred HHhCCCCCCHHHHH--HHHHHHHhcCCh-hHHHHHHHHHH
Q 043060 495 LKTMEMKPDAAIWT--SLLGACRVHGRL-ELGESVAKHLL 531 (707)
Q Consensus 495 ~~~~~~~p~~~~~~--~ll~~~~~~g~~-~~A~~~~~~~~ 531 (707)
++.+....|..+-. .+.-+....|+. ..+...+..+.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 76552223433333 233333334433 45666666664
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=88.81 E-value=12 Score=40.40 Aligned_cols=82 Identities=10% Similarity=0.047 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHh-
Q 043060 304 VMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK- 382 (707)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~- 382 (707)
.....+.-.|+++.|++.+... ...|.+.+...+..+.-.+ ....++.. .... ...-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~---~~~~lls~----~~~~-~~lN~arLI~~Yt~~ 366 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFK---IDSSTRLT----KKPK-RDIRFANILANYTKS 366 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC-------------------------CHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCcc---CCCccccc----CCCc-ccccHHHHHHHHHHH
Confidence 3556667789999999987754 2456666665555443332 21111111 1011 11225567777764
Q ss_pred --cCCHHHHHHHHhcCC
Q 043060 383 --CGNIKAAEQVFDGMG 397 (707)
Q Consensus 383 --~g~~~~A~~~~~~~~ 397 (707)
..+..+|.+.|--+.
T Consensus 367 F~~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 367 FRYSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTTTCHHHHHHHHHGGG
T ss_pred hhcCCHHHHHHHHHHHh
Confidence 577788887776553
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.58 E-value=19 Score=34.98 Aligned_cols=168 Identities=14% Similarity=0.118 Sum_probs=101.8
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHH----HHHHHCCCCCCHhHHHHHHHHHh
Q 043060 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLF----SRMIGEGLQPDDITFVGVLSACN 447 (707)
Q Consensus 372 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~ 447 (707)
.|.++..=|.+.+++++|.+++.. -...+.++|+..-|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456667778889999999987643 233455667765554443 45555678888877777777665
Q ss_pred ccCCHH-HHHHHHHHhH---HhcC--CCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 043060 448 HAGLLD-IGRQYFNAMI---QDYK--ISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLE 521 (707)
Q Consensus 448 ~~g~~~-~a~~~~~~~~---~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 521 (707)
....-+ +=..+.+.++ .++| ..-|......+...|.+.|++.+|..-|= .+.++.+..+..++.-+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 544211 0111222221 1123 23466777788899999999999988773 3434344666666554444332
Q ss_pred HHHHHHHHHHccCCCCchhHHHHH-HHhhhcCChhhHHHHHHHHhh
Q 043060 522 LGESVAKHLLELEPENPGAYVLLS-NMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 522 ~A~~~~~~~~~~~p~~~~~~~~l~-~~~~~~g~~~~a~~~~~~m~~ 566 (707)
|.....|..-+ --|...|+...|..+++...+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22333444333 336778899999888777654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=88.40 E-value=9.3 Score=31.31 Aligned_cols=136 Identities=14% Similarity=0.060 Sum_probs=97.4
Q ss_pred HhcCCHHHHHHHHhcCCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHH
Q 043060 381 AKCGNIKAAEQVFDGMGY-KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459 (707)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 459 (707)
.-.|.+++..++..+... .+..-||-+|.-....-+-+-..+.++..-. --|. ...|++.....-+
T Consensus 18 ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi~C~ 84 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVVECG 84 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHHHHH
Confidence 346778888888887643 4566677777777777777766666665543 1121 2334555544444
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 043060 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKT-M-EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP 535 (707)
Q Consensus 460 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 535 (707)
-.+ ..+......-++.+..+|+-++-.+++.. . ..+|++...-.+..+|.+.|+..+|.+++.++-+.+-
T Consensus 85 ~~~------n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 85 VIN------NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHh------cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 433 13556667778889999999999999999 4 4567899999999999999999999999999988764
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.81 E-value=3.3 Score=35.42 Aligned_cols=26 Identities=8% Similarity=-0.046 Sum_probs=13.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhH
Q 043060 438 TFVGVLSACNHAGLLDIGRQYFNAMI 463 (707)
Q Consensus 438 t~~~ll~a~~~~g~~~~a~~~~~~~~ 463 (707)
++..+.+++...+++.+|...|+...
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34444555555555555555555543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.56 E-value=2.2 Score=36.50 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=22.9
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHHHH
Q 043060 539 GAYVLLSNMYAGAGRWDDVATIRTRL 564 (707)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~a~~~~~~m 564 (707)
+.-+.++.+|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 56678999999999999999998775
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=87.27 E-value=8.3 Score=29.47 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=61.4
Q ss_pred CchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043060 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327 (707)
Q Consensus 248 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (707)
.-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||.+.|-++-.. +.|..+++...+..+..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 35667677776666653 333333334457889999999999999999999999887654 67888888888888877
Q ss_pred cCCCCChhhHH
Q 043060 328 SNIEPNDVTFL 338 (707)
Q Consensus 328 ~g~~p~~~t~~ 338 (707)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 45444443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.89 E-value=23 Score=34.09 Aligned_cols=170 Identities=10% Similarity=0.074 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHH----HHHHhhcCCCCChhhHHhHHHHHh
Q 043060 270 VTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALML----FRQMLQSNIEPNDVTFLSVLPACA 345 (707)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 345 (707)
.+.++..=|.+.+++++|.+++.. -...+.+.|+...|.++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344555668888899998888643 23345566776665554 344445577888777777776665
Q ss_pred ccCCc-----hHHHHHHHHHHHhCC-CCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHc---CC
Q 043060 346 YLGAL-----DLGKWIHAYIDKNHQ-KLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMH---GK 416 (707)
Q Consensus 346 ~~~~~-----~~a~~~~~~~~~~~~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 416 (707)
....- .-.......-.+.|. ...++.....+...|.+.|++.+|+.-|-.-...+...+..|+.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 53321 122222333333332 2337888899999999999999999887633322455555555444443 43
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 043060 417 ADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQD 465 (707)
Q Consensus 417 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 465 (707)
..++--..- .++ --|.-.|++..|..+|+...+.
T Consensus 184 ~~e~dlf~~--------------RaV-L~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVAEFFS--------------RLV-FNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHH--------------HHH-HHHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHHHHHH--------------HHH-HHHHHhcCHHHHHHHHHHHHHH
Confidence 333211111 112 2344567888888888876553
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.81 E-value=1.6 Score=44.18 Aligned_cols=67 Identities=19% Similarity=0.111 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh-----CCCccCC
Q 043060 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND-----KGMKKVP 573 (707)
Q Consensus 507 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 573 (707)
...++.++...|+.+++...++.++..+|-+...|..|+.+|.+.|+..+|.+.|++..+ .|+.+.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 345667777888888888888888888888888888888888889999988888877653 4664433
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.31 E-value=7.9 Score=29.55 Aligned_cols=86 Identities=13% Similarity=0.036 Sum_probs=61.4
Q ss_pred CchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043060 248 SLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQ 327 (707)
Q Consensus 248 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (707)
.-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||.+.|-++-.. +.|..+++...+..+..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 35666666666666653 333333334457889999999999999999999999887654 78888888888888877
Q ss_pred cCCCCChhhHH
Q 043060 328 SNIEPNDVTFL 338 (707)
Q Consensus 328 ~g~~p~~~t~~ 338 (707)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 45444443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.24 E-value=3.3 Score=45.40 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=39.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHh
Q 043060 411 LAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAM 462 (707)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~ 462 (707)
+...|+++.|+++-++... ..|+.+ +|..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4567888888888888877 677765 7888888888888888888887776
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.99 E-value=32 Score=33.31 Aligned_cols=168 Identities=13% Similarity=0.026 Sum_probs=96.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHH----HHHhhcCCCCChhhHHhHHHHHhc
Q 043060 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLF----RQMLQSNIEPNDVTFLSVLPACAY 346 (707)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~ 346 (707)
+.++..=|.+.+++++|.+++.. -...+.+.|+...|.++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44455668888999999887643 233455566665554443 344456777887777777776665
Q ss_pred cCCchH-----HHHHHHHHHHhC-CCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 043060 347 LGALDL-----GKWIHAYIDKNH-QKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKA 420 (707)
Q Consensus 347 ~~~~~~-----a~~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 420 (707)
...-+. .......-.+.| ...-++.....+...|.+.+++.+|+.-|-.-....+..+..|+.-+...+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e- 185 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT- 185 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG-
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc-
Confidence 543221 112222333333 2233788888999999999999999988853222223555555444433332111
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 043060 421 LSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQ 464 (707)
Q Consensus 421 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 464 (707)
+|.+.-.++ --|.-.+++..|..+|+...+
T Consensus 186 -------------~dlfiaRaV-L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -------------APLYCARAV-LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------HHHHHHHHH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHH-HHHHHhCCHHHHHHHHHHHHH
Confidence 111222222 235556788888887766654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=83.48 E-value=39 Score=33.79 Aligned_cols=160 Identities=9% Similarity=-0.028 Sum_probs=90.2
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCCCC--------ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHhHH---
Q 043060 372 LWTSLIDMYAKCGNIKAAEQVFDGMGYK--------TLASWNAMISGLAMH-GKADKALSLFSRMIGEGLQPDDITF--- 439 (707)
Q Consensus 372 ~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~--- 439 (707)
....|...|.+.|+.++..+++.....- ....-..++..+... +..+.-.++..+..+.. +-+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3556777777778777777777665321 223455666666553 33344444444444311 1112233
Q ss_pred ---HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCHHHH
Q 043060 440 ---VGVLSACNHAGLLDIGRQYFNAMIQDYKISPK----LQHYGCMVDLLGRAGLFDEAEALLKTM-----EMKPDAAIW 507 (707)
Q Consensus 440 ---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~ 507 (707)
..++..|...|++.+|..++..+.+...-..| .+.|..-+.+|...|++.++...+.+. .+.|++.+-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 14666777788888887777777664322112 234555666777788887777777654 122333222
Q ss_pred ----HHHHHHHH-hcCChhHHHHHHHHHHc
Q 043060 508 ----TSLLGACR-VHGRLELGESVAKHLLE 532 (707)
Q Consensus 508 ----~~ll~~~~-~~g~~~~A~~~~~~~~~ 532 (707)
..-+-.+. ..+++..|...|-+.++
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 22223345 67788888777766654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.26 E-value=34 Score=35.03 Aligned_cols=185 Identities=12% Similarity=0.101 Sum_probs=117.2
Q ss_pred cCCHHHHHHHHHHHhhc-----CCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHH----Hh
Q 043060 312 TSDYKEALMLFRQMLQS-----NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMY----AK 382 (707)
Q Consensus 312 ~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y----~~ 382 (707)
.|++++|++.+..+.+. ...........++..|...++++...+....+.+..... ......+++.+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhc
Confidence 37789998887666542 234445567788889999999998888777766544332 23333444332 22
Q ss_pred cCC--HHHHHHHHhcCCC---C----C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCH---hHHHHHHHH
Q 043060 383 CGN--IKAAEQVFDGMGY---K----T---LASWNAMISGLAMHGKADKALSLFSRMIGE--GLQPDD---ITFVGVLSA 445 (707)
Q Consensus 383 ~g~--~~~A~~~~~~~~~---~----~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~a 445 (707)
... .+.-..+.+.... . . ......|...|...|++.+|..++.++... |..+.. ..+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 332 2223334433321 1 1 113456778888999999999999998753 222221 245666778
Q ss_pred HhccCCHHHHHHHHHHhHHhc-CCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043060 446 CNHAGLLDIGRQYFNAMIQDY-KISPK----LQHYGCMVDLLGRAGLFDEAEALLKTM 498 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 498 (707)
|...+++..|..++.++.... ...+. ...|.+++..+...+++.+|...|.++
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 889999999999998874321 12222 245677888888889998888876664
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=83.14 E-value=34 Score=32.88 Aligned_cols=131 Identities=10% Similarity=0.048 Sum_probs=74.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHH----HHhCccccCCCCCCHhhHHHHHHHH
Q 043060 168 HTSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQL----FDEMPIREENFVPNESTVVTVLSAC 243 (707)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~~~~~~p~~~t~~~ll~~~ 243 (707)
|.++..-|.+.+++++|.+++..- ...+.+.|+...|-++ .+-. .+.+++++......++..+
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~--~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVY--DLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHH
Confidence 445566677778888887776432 2334555665554443 2222 2256666766666666655
Q ss_pred hccCCch-HHHHHHHHH----HHcC--CCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHh
Q 043060 244 AHMGSLE-LGNWVCSLI----EGHG--LGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTH 311 (707)
Q Consensus 244 ~~~g~~~-~a~~~~~~~----~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 311 (707)
.....-+ .-.++...+ .+.| -..++.....+...|.+.|++.+|+.-|-.-...|...+..++.-+..
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 4432111 112333333 3333 234778888999999999999999988763332245555544444333
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=83.13 E-value=8.8 Score=31.35 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=47.3
Q ss_pred CChHHHHHHHHHHHHcCCH---HHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 043060 470 PKLQHYGCMVDLLGRAGLF---DEAEALLKTM-EMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540 (707)
Q Consensus 470 p~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 540 (707)
|+..+--.+..++.+.... .+++.++++. ...|. ...+--|.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4444444445555555543 3456666554 22342 4556677778999999999999999999999988643
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=82.41 E-value=16 Score=30.20 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=48.5
Q ss_pred CCChHHHHHHHHHHHHcCCHH---HHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 043060 469 SPKLQHYGCMVDLLGRAGLFD---EAEALLKTM-EMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540 (707)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 540 (707)
.|+..+--.+..++.+..+.+ +++.+++.. ...|+ ....-.|.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 355555445555666655433 455566554 22342 3445566778999999999999999999999988643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 707 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-11 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.004 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-05 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.1 bits (157), Expect = 1e-11
Identities = 53/391 (13%), Positives = 109/391 (27%), Gaps = 25/391 (6%)
Query: 171 LINMYAQNGELESARLVFNKSSLRD---AVSYTALITGYASRGYLDDARQLFDEMPIREE 227
L + Q G+ E+A + ++ L + + LD + +
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 228 NFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKA 287
S + V + ++ + +++ AL+ G +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 288 RDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAY- 346
+ + ++ + + + +PN S L
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI---ETQPNFAVAWSNLGCVFNA 181
Query: 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD---GMGYKTLAS 403
G + L N + + +L ++ + A + +
Sbjct: 182 QGEIWLAIHHFEKAVTLDP--NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239
Query: 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463
+ G D A+ + R I LQP + CN A L A
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPD-----AYCNLANALKEKGSVAEAED 292
Query: 464 QDYKISPKLQHYGCMVDLLGRA----GLFDEAEALL-KTMEMKPD-AAIWTSLLGACRVH 517
+ ++ L G +EA L K +E+ P+ AA ++L +
Sbjct: 293 CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352
Query: 518 GRLELGESVAKHLLELEPENPGAYVLLSNMY 548
G+L+ K + + P AY + N
Sbjct: 353 GKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.004
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 26/107 (24%)
Query: 450 GLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALL-KTMEMKPDAAIWT 508
G +++ + + +AG F+ AE + +PD
Sbjct: 1 GPMELAHREY------------------------QAGDFEAAERHCMQLWRQEPDNTGVL 36
Query: 509 SLLGACRVH-GRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554
LL + RL+ + ++ P AY L N+Y G+
Sbjct: 37 LLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 2e-05
Identities = 31/293 (10%), Positives = 68/293 (23%), Gaps = 25/293 (8%)
Query: 278 YSKCGDLVKARDLFESIEKRD---VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPND 334
+ GDL A LFE+ ++D + +W + A+ R+ L+ +
Sbjct: 29 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT 88
Query: 335 VTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFD 394
+ + + + ++ +
Sbjct: 89 ALM-----------------ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA 131
Query: 395 GMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDI 454
G + L + LF + D L +
Sbjct: 132 GGAGLGPSKRILGS--LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD 189
Query: 455 GRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD-AAIWTSLLGA 513
+ + L L + A + +E++P +L +
Sbjct: 190 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS 249
Query: 514 CRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566
C G L ++ ++ G M W + + L
Sbjct: 250 CINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI--WSTLRLALSMLGQ 300
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 41.2 bits (96), Expect = 3e-04
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 484 RAGLFDEAEALL-KTMEMKP-DAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541
G +A LL + ++ P DA++ +S + + G E + ++L PE
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67
Query: 542 VLLSNMYAGAGRWDDVA 558
L ++ A D A
Sbjct: 68 SQLRHLVKAAQARKDFA 84
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 707 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.15 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.11 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.1 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.05 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.02 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.0 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.0 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.98 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.97 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.91 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.68 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.66 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.65 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.64 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.55 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.53 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.53 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.51 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.5 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.49 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.39 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.36 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.35 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.31 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.3 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.28 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.24 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.15 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.14 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.13 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.11 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.05 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.03 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.9 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.88 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.87 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.81 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.77 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.77 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.68 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.66 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.65 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.63 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.59 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.27 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.26 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.2 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.19 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.17 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.68 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.52 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.91 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.39 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.72 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.48 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 87.23 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 86.02 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.9e-21 Score=197.80 Aligned_cols=375 Identities=13% Similarity=0.087 Sum_probs=260.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChhHHHHHHhcCC---CCCeehHHHHHHHHHhCCCh
Q 043060 136 ILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGELESARLVFNKSS---LRDAVSYTALITGYASRGYL 212 (707)
Q Consensus 136 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 212 (707)
+...+.+.|++++|.+.++.+++.. +.++.++..+...|.+.|++++|...|++.. +.+..+|..+...|.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 3445667788888888888887764 3456677777777778888888887777653 23556677777777777777
Q ss_pred hHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHH
Q 043060 213 DDARQLFDEMPIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFE 292 (707)
Q Consensus 213 ~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 292 (707)
++|++.+..... ....+..............+................ .
T Consensus 84 ~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------------------- 132 (388)
T d1w3ba_ 84 QEAIEHYRHALR---LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-P--------------------------- 132 (388)
T ss_dssp HHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-T---------------------------
T ss_pred cccccccccccc---cccccccccccccccccccccccccccccccccccc-c---------------------------
Confidence 777777777642 111222222233333333333333333333332222 1
Q ss_pred hcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHH
Q 043060 293 SIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSL 372 (707)
Q Consensus 293 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 372 (707)
.....+..........+....+...+.+..... +-+...+..+...+...|..+.|...+...++..+. +...
T Consensus 133 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~ 205 (388)
T d1w3ba_ 133 ----DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN--FLDA 205 (388)
T ss_dssp ----TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CHHH
T ss_pred ----ccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc--cHHH
Confidence 222233333334444444455555444444322 112333444444555555556666655555555444 6667
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhc
Q 043060 373 WTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNH 448 (707)
Q Consensus 373 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 448 (707)
+..+...|...|++++|...|++.. ..+...|..+...+.+.|++++|+..|++..+ ..|+. .++..+...+..
T Consensus 206 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~ 283 (388)
T d1w3ba_ 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHH
T ss_pred HHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 7778888888888888888887653 44666788888889999999999999999988 56664 478888899999
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 043060 449 AGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESV 526 (707)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~ 526 (707)
.|++++|.+.++.... ..+.+...+..+...|.+.|++++|++.+++. ...|+ ..+|..+...+...|++++|+..
T Consensus 284 ~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 361 (388)
T d1w3ba_ 284 KGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998876 45567788889999999999999999999985 67776 78899999999999999999999
Q ss_pred HHHHHccCCCCchhHHHHHHHhhhcCC
Q 043060 527 AKHLLELEPENPGAYVLLSNMYAGAGR 553 (707)
Q Consensus 527 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 553 (707)
++++++++|+++.+|..|+.+|.+.|+
T Consensus 362 ~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.2e-19 Score=186.59 Aligned_cols=356 Identities=16% Similarity=0.142 Sum_probs=283.4
Q ss_pred HHHHHHhCCChhHHHHHHHhCccccCCCCC-CHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 043060 202 LITGYASRGYLDDARQLFDEMPIREENFVP-NESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSK 280 (707)
Q Consensus 202 li~~~~~~g~~~~A~~l~~~m~~~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 280 (707)
+...+.+.|++++|++.|+++.. ..| +...+..+...+...|++++|...+..+++.. +.+..++..+..+|.+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~ 79 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWR----QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhh
Confidence 34456677888888888888753 223 45566777777888888888888888887764 4456788889999999
Q ss_pred cCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHH
Q 043060 281 CGDLVKARDLFESIEK---RDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIH 357 (707)
Q Consensus 281 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 357 (707)
.|++++|...+....+ .+...+..........+....+............ ................+....+....
T Consensus 80 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hcccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHH
Confidence 9999999999887764 2344455555556666666666666666555432 33334444555566777778888888
Q ss_pred HHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcC---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 043060 358 AYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGM---GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQP 434 (707)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 434 (707)
.......+. +...+..+...+...|++++|...+++. ...+..+|..+...+...|++++|+..|++..... ..
T Consensus 159 ~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 235 (388)
T d1w3ba_ 159 LKAIETQPN--FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN 235 (388)
T ss_dssp HHHHHHCTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred HHhhccCcc--hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hh
Confidence 888777766 7788899999999999999999999875 34567789999999999999999999999998842 33
Q ss_pred CHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 043060 435 DDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLG 512 (707)
Q Consensus 435 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 512 (707)
+...+..+...+.+.|++++|...|+.+.+ ..+.+...+..+...|...|++++|++.++.. ...| +...+..+..
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHH
Confidence 445778888999999999999999999876 33346788999999999999999999999886 3334 5888999999
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 513 ACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
.+...|++++|+..+++++++.|+++.++..++.+|.+.|++++|++.+++..+..
T Consensus 314 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999988643
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=4.4e-14 Score=140.74 Aligned_cols=197 Identities=13% Similarity=0.094 Sum_probs=145.2
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcC---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhH-------
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGM---GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDIT------- 438 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t------- 438 (707)
+...+..+..+|...|++++|...|++. ...+...|..++..|...|++++|++.+++... ..|+...
T Consensus 52 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~ 129 (323)
T d1fcha_ 52 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEE 129 (323)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC----
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHH--hccchHHHHHhhhh
Confidence 4445555556666666666666665543 223455566666666666666666666666655 3333211
Q ss_pred ---------HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHH
Q 043060 439 ---------FVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIW 507 (707)
Q Consensus 439 ---------~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~ 507 (707)
....+..+...+...++...|..+.+.....++...+..+...+.+.|++++|+..+++. ...|+ ..+|
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 209 (323)
T d1fcha_ 130 GAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW 209 (323)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccch
Confidence 111122334456678888888887765444456778889999999999999999999986 45565 8899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 508 TSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 508 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
..+...+...|++++|++.++++++++|+++.++..++.+|.+.|++++|++.|++..+.
T Consensus 210 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 210 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998874
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2e-13 Score=135.92 Aligned_cols=264 Identities=16% Similarity=0.089 Sum_probs=168.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-ChhhHHhHHHHHhccCC
Q 043060 274 LIDMYSKCGDLVKARDLFESIEKR---DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEP-NDVTFLSVLPACAYLGA 349 (707)
Q Consensus 274 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~ 349 (707)
....+.+.|++++|...|+++.+. +..+|..+...|...|++++|+..|.+..+.. | +...+..+...+...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--ccccccccccccccccccc
Confidence 444566666666666666665432 34556666666666666666666666665532 2 23334444444555555
Q ss_pred chHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043060 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIG 429 (707)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (707)
++.|.+.+..+....+.. ............ ..+.......+..+...+.+.+|.+.|.+..+
T Consensus 103 ~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAY--AHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp HHHHHHHHHHHHHTSTTT--GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccch--HHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 555555555554443321 100000000000 00111111222334455678889999998877
Q ss_pred CC-CCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHH
Q 043060 430 EG-LQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAI 506 (707)
Q Consensus 430 ~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~ 506 (707)
.. -.++...+..+...+...|++++|...|+..... .+-+...|..+...|.+.|++++|.+.|++. ...|+ ..+
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 242 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence 32 1234557778888999999999999999998763 2346788899999999999999999999986 55676 888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh-----------HHHHHHHhhhcCChhhHHH
Q 043060 507 WTSLLGACRVHGRLELGESVAKHLLELEPENPGA-----------YVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 507 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~a~~ 559 (707)
|..++.+|...|++++|+..|+++++++|++... |..+..++...|+.+.+..
T Consensus 243 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 243 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999998876653 4456666766777765543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=3.7e-09 Score=105.44 Aligned_cols=261 Identities=15% Similarity=0.024 Sum_probs=164.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--C-C-----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CChhhHHhHHHHH
Q 043060 274 LIDMYSKCGDLVKARDLFESIEK--R-D-----VISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE-PNDVTFLSVLPAC 344 (707)
Q Consensus 274 li~~~~~~g~~~~A~~~~~~~~~--~-~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~ 344 (707)
....+...|++++|+..|++..+ | + ..+++.+...|...|++++|+..|++..+.... ++...
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-------- 89 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY-------- 89 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH--------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH--------
Confidence 34455566666666666655421 1 1 234555666666777777777777666542110 11100
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC-------CC----ChHHHHHHHHHHHH
Q 043060 345 AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG-------YK----TLASWNAMISGLAM 413 (707)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~----~~~~~~~li~~~~~ 413 (707)
....+..+...|...|++..|...+.... .+ ....+..+...+..
T Consensus 90 ------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 145 (366)
T d1hz4a_ 90 ------------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 145 (366)
T ss_dssp ------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHH
Confidence 12233444555566666666665554431 11 11245556667778
Q ss_pred cCCHHHHHHHHHHHHHCCCC----CCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHH
Q 043060 414 HGKADKALSLFSRMIGEGLQ----PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK-----LQHYGCMVDLLGR 484 (707)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~ 484 (707)
.|+++.+...+.+....... ....++......+...++..++...+...........+ ...+..+...+..
T Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T d1hz4a_ 146 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 225 (366)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh
Confidence 88888888888877663221 11234455556677778888888777765543222221 2345566777889
Q ss_pred cCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHcc------CCCCchhHHHHHHHhhhcC
Q 043060 485 AGLFDEAEALLKTM-EMKP-----DAAIWTSLLGACRVHGRLELGESVAKHLLEL------EPENPGAYVLLSNMYAGAG 552 (707)
Q Consensus 485 ~g~~~~A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g 552 (707)
.|++++|...+++. ...| ....+..+..++...|++++|...+++++.. .|....++..++.+|.+.|
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 305 (366)
T d1hz4a_ 226 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305 (366)
T ss_dssp TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCC
Confidence 99999999999886 2222 1456677888999999999999999998743 3555678899999999999
Q ss_pred ChhhHHHHHHHHhh
Q 043060 553 RWDDVATIRTRLND 566 (707)
Q Consensus 553 ~~~~a~~~~~~m~~ 566 (707)
++++|.+.+++..+
T Consensus 306 ~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 306 RKSDAQRVLLDALK 319 (366)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=9.1e-10 Score=107.94 Aligned_cols=192 Identities=10% Similarity=0.124 Sum_probs=114.8
Q ss_pred HHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHh-HHHHHHHH
Q 043060 371 SLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLAMHG-KADKALSLFSRMIGEGLQPDDI-TFVGVLSA 445 (707)
Q Consensus 371 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a 445 (707)
.+++.+...+.+.+..++|+++++++. ..+...|+.....+...| ++++|+..+++.++ ..|+.. +|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhHH
Confidence 344555555556666666666666542 334556666666665554 36666666666665 445443 56666666
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC----
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGR---- 519 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~---- 519 (707)
+.+.|++++|++.++.+.+ --+.+...|..+..++.+.|++++|++.++++ ...|+ ...|+.+...+...+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh
Confidence 6666666666666666654 22234566666666666666666666666664 44443 5566666555554443
Q ss_pred --hhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 520 --LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 520 --~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
+++|...+.++++++|++..+|..++.++...| .+++.+.++...+.
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence 456777777777777777777777766655544 45666666665543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=2.4e-09 Score=104.79 Aligned_cols=211 Identities=11% Similarity=0.164 Sum_probs=135.8
Q ss_pred cCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcC-CHHHHHHHHhcC---CCCChHHHHHHHHHHHHcCCHHHHHH
Q 043060 347 LGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG-NIKAAEQVFDGM---GYKTLASWNAMISGLAMHGKADKALS 422 (707)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~ 422 (707)
.+..++|.+++..+++..+. +..+|+....++...| ++++|+..+++. ...+..+|+.+...+...|++++|++
T Consensus 56 ~e~~~~Al~~~~~ai~lnP~--~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~ 133 (315)
T d2h6fa1 56 DERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 133 (315)
T ss_dssp TCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred CCchHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHH
Confidence 33444444444444444443 5556666666666655 367777777655 24466677777777777777777777
Q ss_pred HHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC------HHHHHHHH
Q 043060 423 LFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL------FDEAEALL 495 (707)
Q Consensus 423 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~ 495 (707)
.++++++ ..|+. ..|..+...+.+.|++++|.+.++.+++. -+.+...|+.+..++.+.|. +++|++.+
T Consensus 134 ~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~ 209 (315)
T d2h6fa1 134 FIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYT 209 (315)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHH
T ss_pred HHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchhhhhHHhHHHH
Confidence 7777777 55553 47777777777777777777777777652 22355666666666666555 56787777
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC--chhHHHHHHHhhhc--CChhhHHHHHHHH
Q 043060 496 KTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN--PGAYVLLSNMYAGA--GRWDDVATIRTRL 564 (707)
Q Consensus 496 ~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~--g~~~~a~~~~~~m 564 (707)
.+. ...|+ ...|+.+...+... ..+++.+.+++++++.|.. +..+..++.+|... +..+.+...+++.
T Consensus 210 ~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka 283 (315)
T d2h6fa1 210 LEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 283 (315)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 764 55665 77888777665544 4688889999998888754 44556677777543 4444555444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=1.3e-09 Score=103.70 Aligned_cols=199 Identities=12% Similarity=-0.043 Sum_probs=113.7
Q ss_pred hHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCC---CCChHHHHHHHHHHH
Q 043060 336 TFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMG---YKTLASWNAMISGLA 412 (707)
Q Consensus 336 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 412 (707)
++..+...+...|+++.|...+...++..+. ++.+++.+..+|.+.|++++|.+.|+++. ..+..+|..+...|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC--CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH
Confidence 3334444555666666666666666665554 66777777778888888888888777663 335567777777788
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC----
Q 043060 413 MHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL---- 487 (707)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---- 487 (707)
..|++++|++.|++..+ ..|+.. ....+..++.+.+..+....+...... ..+....++ ++..+.....
T Consensus 117 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTL 190 (259)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHH
T ss_pred HHhhHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHH
Confidence 88888888888888777 344433 333333344444544444444444332 112222222 2222221111
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHH
Q 043060 488 FDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYV 542 (707)
Q Consensus 488 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 542 (707)
.+.+...+... ...|+ ..+|..+...+...|++++|...+++++..+|++...|.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 12222211110 11233 446677778888888888888888888888887654443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=1.1e-09 Score=104.38 Aligned_cols=196 Identities=14% Similarity=0.058 Sum_probs=142.9
Q ss_pred cHHHHhHHhhHHHhcCCHHHHHHHHhcC---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHH
Q 043060 369 NVSLWTSLIDMYAKCGNIKAAEQVFDGM---GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLS 444 (707)
Q Consensus 369 ~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 444 (707)
...++..+..+|.+.|++++|.+.|++. ...++.+|+.+..+|.+.|++++|++.|+++.+ +.|+.. ++..+..
T Consensus 36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~ 113 (259)
T d1xnfa_ 36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGI 113 (259)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHH
Confidence 4456778899999999999999999976 356888999999999999999999999999999 667654 7888889
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH----hcCC
Q 043060 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPDAAIWTSLLGACR----VHGR 519 (707)
Q Consensus 445 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~----~~g~ 519 (707)
++...|++++|...|+...+. .+.+......+...+.+.+..+.+..+.... ...++...++. +..+. ..+.
T Consensus 114 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 114 ALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTL 190 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHH
Confidence 999999999999999999874 2334555444555566666655555554443 11222222222 22221 1223
Q ss_pred hhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 520 LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 520 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.+.+...+.......|....+|..++.+|...|++++|.+.|++..+..+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 34444444444455666777899999999999999999999999987554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.00 E-value=2.7e-08 Score=97.09 Aligned_cols=184 Identities=11% Similarity=0.074 Sum_probs=121.2
Q ss_pred chHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHHHHHHhcCCC---CC-hHHHHHHHHHHHHcCCHHHHHHHHH
Q 043060 350 LDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQVFDGMGY---KT-LASWNAMISGLAMHGKADKALSLFS 425 (707)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~ 425 (707)
.+.+..+++..++..... +...+..++..+.+.|+++.|..+|+++.. .+ ...|...+..+.+.|+.++|.++|+
T Consensus 80 ~~~a~~i~~ral~~~~p~-~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 80 SDEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 456666777766653333 666777777777788888888888876532 22 3467777777777788888888888
Q ss_pred HHHHCCCCCCHhHHHHHHH-HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CC
Q 043060 426 RMIGEGLQPDDITFVGVLS-ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM----EM 500 (707)
Q Consensus 426 ~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~ 500 (707)
++++.+.. +...|..... -+...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|+++.|..+|++. +.
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 87764321 2223333222 233457777788888877763 3345667777777777777877777777774 23
Q ss_pred CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 043060 501 KPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 501 ~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 537 (707)
.|+ ...|...+..-..+|+.+.+..+++++.+..|..
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 333 4567777777777777777777777777766654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=7.9e-08 Score=95.44 Aligned_cols=286 Identities=13% Similarity=0.021 Sum_probs=167.7
Q ss_pred HHhccCCchHHHHHHHHHHHcCCCch----hHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHH
Q 043060 242 ACAHMGSLELGNWVCSLIEGHGLGSN----LHVTNALIDMYSKCGDLVKARDLFESIEK-----RD----VISWNVMIGG 308 (707)
Q Consensus 242 ~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~ 308 (707)
.+...|++++|.++++..++.....+ ..+++.+...|...|++++|...|++..+ ++ ..++..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 34455666666666666655421111 23566677778888888888888876542 11 2345566677
Q ss_pred HHhcCCHHHHHHHHHHHhhc----CCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcC
Q 043060 309 YTHTSDYKEALMLFRQMLQS----NIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCG 384 (707)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 384 (707)
+...|++..+...+.+.... +...... ....+..+...|...|
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~---------------------------------~~~~~~~la~~~~~~~ 147 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPM---------------------------------HEFLVRIRAQLLWAWA 147 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH---------------------------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhH---------------------------------HHHHHHHHHHHHHHhc
Confidence 88888888888888776542 1111000 1122334445555556
Q ss_pred CHHHHHHHHhcCC----C----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCH----hHHHHHHHHHhccC
Q 043060 385 NIKAAEQVFDGMG----Y----KTLASWNAMISGLAMHGKADKALSLFSRMIGE--GLQPDD----ITFVGVLSACNHAG 450 (707)
Q Consensus 385 ~~~~A~~~~~~~~----~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~----~t~~~ll~a~~~~g 450 (707)
+++.|...+.... . .....+..+...+...++..++...+.+.... ...... ..+..+...+...|
T Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 227 (366)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence 6665555554431 1 11224444555566667777777666655431 111111 13444555666777
Q ss_pred CHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCh
Q 043060 451 LLDIGRQYFNAMIQDYKISP--KLQHYGCMVDLLGRAGLFDEAEALLKTM-------EMKPD-AAIWTSLLGACRVHGRL 520 (707)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~ 520 (707)
+.++|...+....+.....+ ....+..+...|...|++++|...+++. +..|+ ..+|..+...+...|++
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 307 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence 88888777776643211111 1234556777788888888888877764 33444 56778888889999999
Q ss_pred hHHHHHHHHHHccCCC---------CchhHHHHHHHhhhcCChhhHHHH
Q 043060 521 ELGESVAKHLLELEPE---------NPGAYVLLSNMYAGAGRWDDVATI 560 (707)
Q Consensus 521 ~~A~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~a~~~ 560 (707)
++|.+.+++++++.+. ....+..+...+...++.+++.+-
T Consensus 308 ~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 308 SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 9999999988876432 122344455566677777777553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.98 E-value=4.6e-10 Score=111.57 Aligned_cols=229 Identities=10% Similarity=-0.047 Sum_probs=162.6
Q ss_pred hcCCHHHHHHHHHHHhhcCCCC-ChhhHHhHHHHHhccC--CchHHHHHHHHHHHhCCCCCcHHHH-hHHhhHHHhcCCH
Q 043060 311 HTSDYKEALMLFRQMLQSNIEP-NDVTFLSVLPACAYLG--ALDLGKWIHAYIDKNHQKLNNVSLW-TSLIDMYAKCGNI 386 (707)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~ 386 (707)
..|++++|+..++...+.. | +...+.....++...+ +.+.+...+..+.+..+. +...+ ..+...+...|..
T Consensus 85 ~~~~~~~al~~~~~~l~~~--pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~ 160 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER--NFHCWDYRRFVAAQAAVAP 160 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHhC--CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch--hhhhhhhHHHHHHHhcccc
Confidence 3445677777777777643 3 3334444444444444 466777777777777655 44444 3455677778999
Q ss_pred HHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 043060 387 KAAEQVFDGMGY---KTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMI 463 (707)
Q Consensus 387 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 463 (707)
++|...++.+.. .+..+|+.+...+.+.|++++|...+++... +.|+.. .+...+...+..+++...+....
T Consensus 161 ~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l 235 (334)
T d1dcea1 161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWL 235 (334)
T ss_dssp HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHH
Confidence 999999988754 3667888888899999988888766655544 233322 22333445566667777777765
Q ss_pred HhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 043060 464 QDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAY 541 (707)
Q Consensus 464 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 541 (707)
. ..+++...+..++..+...|+.++|.+.+.+. ...|+ ..+|..++..+...|+.++|...++++++++|.+...|
T Consensus 236 ~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~ 313 (334)
T d1dcea1 236 L--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313 (334)
T ss_dssp H--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred H--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence 5 33445556667788888899999999988875 56665 77888899999999999999999999999999888888
Q ss_pred HHHHHHhhh
Q 043060 542 VLLSNMYAG 550 (707)
Q Consensus 542 ~~l~~~~~~ 550 (707)
..|...+.-
T Consensus 314 ~~L~~~~~~ 322 (334)
T d1dcea1 314 DDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhH
Confidence 888777653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.97 E-value=3.3e-08 Score=96.45 Aligned_cols=182 Identities=10% Similarity=0.062 Sum_probs=145.7
Q ss_pred hcCCHHHHHHHHhcC----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHhccCCHHHH
Q 043060 382 KCGNIKAAEQVFDGM----GYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPD--DITFVGVLSACNHAGLLDIG 455 (707)
Q Consensus 382 ~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a 455 (707)
..+..++|..+|++. ...+...|...+..+...|+.++|..+|+++++ ..|. ...|...+..+.+.|+++.|
T Consensus 76 ~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~--~~~~~~~~~w~~~~~~~~~~~~~~~a 153 (308)
T d2onda1 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HhcCChHHHHHHHHHHHHHcCChHHH
Confidence 344567888888875 334677899999999999999999999999998 4443 34688899999999999999
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHH-HHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 043060 456 RQYFNAMIQDYKISPKLQHYGCMVDLL-GRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLE 532 (707)
Q Consensus 456 ~~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 532 (707)
+++|+.+.+. .+.+...|...+... ...|+.+.|..+|+.+ ...|+ ...|..++..+...|+++.|..+|+++++
T Consensus 154 r~i~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 154 RMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999998763 333445555555443 3468999999999986 33344 88999999999999999999999999999
Q ss_pred cCCCCch----hHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 533 LEPENPG----AYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 533 ~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
..|.++. .|...+..-...|+.+.+.++.+++.+.
T Consensus 232 ~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8775543 6777788778889999999999998764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.91 E-value=2e-09 Score=106.87 Aligned_cols=246 Identities=9% Similarity=-0.082 Sum_probs=177.5
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCChhhH-H---hHHHHH-------hccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhH
Q 043060 311 HTSDYKEALMLFRQMLQSNIEPNDVTF-L---SVLPAC-------AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDM 379 (707)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~p~~~t~-~---~ll~~~-------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 379 (707)
..+..++|++++.+..+. .|+..+. + .++... ...+.++.+...++.+.+..+. +...+..+..+
T Consensus 41 ~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk--~~~~~~~~~~~ 116 (334)
T d1dcea1 41 AGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK--SYGTWHHRCWL 116 (334)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC--cHHHHHHhhHH
Confidence 334447777777777763 4554432 1 122222 2334467888888888888877 67777777777
Q ss_pred HHhcC--CHHHHHHHHhcC---CCCChHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCH
Q 043060 380 YAKCG--NIKAAEQVFDGM---GYKTLASWNA-MISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLL 452 (707)
Q Consensus 380 y~~~g--~~~~A~~~~~~~---~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~ 452 (707)
+...+ ++++|...++++ ..++...|.. ....+...+.+++|+..++++++ ..|+. ..|..+..++...|++
T Consensus 117 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~--~~p~~~~a~~~l~~~~~~~~~~ 194 (334)
T d1dcea1 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQ 194 (334)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhcCH
Confidence 76665 488999998876 3446666654 44667778999999999999988 55654 4788888888888888
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043060 453 DIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKP-DAAIWTSLLGACRVHGRLELGESVAKHL 530 (707)
Q Consensus 453 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 530 (707)
++|...+....+. .|+ .......+...+..+++...+.+. ...| +...+..++..+...|+.++|...+.+.
T Consensus 195 ~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 268 (334)
T d1dcea1 195 PDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQEL 268 (334)
T ss_dssp CCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8776655544331 111 122334456667777787777764 2333 3666777788888899999999999999
Q ss_pred HccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 531 LELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 531 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
++.+|.+..++..++.+|...|++++|.+.+++..+.+
T Consensus 269 ~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 269 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp CTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred HhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999998754
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.68 E-value=4.7e-08 Score=88.50 Aligned_cols=97 Identities=18% Similarity=0.087 Sum_probs=69.4
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 470 PKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
|+...+...++.|.+.|++++|+..|++. ...|+ ...|..++.+|.+.|+++.|+..++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45555556666777777777777777664 44454 66777777777777777777777777777777777777777777
Q ss_pred hhhcCChhhHHHHHHHHhh
Q 043060 548 YAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~ 566 (707)
|.+.|++++|...+++..+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=8.3e-08 Score=77.99 Aligned_cols=92 Identities=11% Similarity=0.105 Sum_probs=74.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChh
Q 043060 478 MVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWD 555 (707)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 555 (707)
-.+.+.+.|++++|+..|++. ...|+ ...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 456677888888888888875 44554 7788888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHhhCCC
Q 043060 556 DVATIRTRLNDKGM 569 (707)
Q Consensus 556 ~a~~~~~~m~~~~~ 569 (707)
+|+..+++..+..+
T Consensus 89 ~A~~~~~~a~~~~p 102 (117)
T d1elwa_ 89 EAKRTYEEGLKHEA 102 (117)
T ss_dssp HHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhCC
Confidence 88888888876543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=4.8e-07 Score=80.74 Aligned_cols=140 Identities=9% Similarity=-0.015 Sum_probs=100.9
Q ss_pred hhHHHhcCCHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHH
Q 043060 377 IDMYAKCGNIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIG 455 (707)
Q Consensus 377 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a 455 (707)
...+...|+++.|++.|+++..++...|..+...|...|++++|++.|++.++ +.|+.. .|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 55667888999999999988888888888888899999999999999999888 566554 777788888888888888
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 043060 456 RQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELE 534 (707)
Q Consensus 456 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 534 (707)
...|+..... .+++... .|...| +..+++ ..++..+..++...|++++|.+.+++++++.
T Consensus 90 ~~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8888877652 1111100 000000 011112 3456677778888899999999888888888
Q ss_pred CCC
Q 043060 535 PEN 537 (707)
Q Consensus 535 p~~ 537 (707)
|+.
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=1.7e-07 Score=76.14 Aligned_cols=106 Identities=20% Similarity=0.141 Sum_probs=87.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 043060 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGR 519 (707)
Q Consensus 442 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~ 519 (707)
-...+...|++++|...|+..++. -+.+...|..+..+|...|++++|+..+++. .+.|+ ...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 345677788888888888887763 3446678888888999999999999988886 44554 8899999999999999
Q ss_pred hhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 520 LELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 520 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
+++|+..++++++++|+++..+..+.++-.
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999988888877643
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.55 E-value=8.1e-08 Score=77.31 Aligned_cols=88 Identities=13% Similarity=0.057 Sum_probs=80.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCCh
Q 043060 477 CMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554 (707)
Q Consensus 477 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 554 (707)
.+...+.+.|++++|+..|++. ...|+ ..+|..+..++...|++++|+..++++++++|+++.++..|+.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 3566788999999999999986 55675 889999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHH
Q 043060 555 DDVATIRTRL 564 (707)
Q Consensus 555 ~~a~~~~~~m 564 (707)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=7.2e-07 Score=79.55 Aligned_cols=120 Identities=13% Similarity=-0.005 Sum_probs=90.0
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 043060 445 ACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLEL 522 (707)
Q Consensus 445 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 522 (707)
.+...|++++|.+.|..+ .+|+...|..+..+|...|++++|++.|++. .+.|+ ...|..+..++.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 345667777777777643 2356666777777777778888887777775 55565 7788888888888888888
Q ss_pred HHHHHHHHHccCCCC----------------chhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 523 GESVAKHLLELEPEN----------------PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 523 A~~~~~~~~~~~p~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
|...|+++++..|.+ ..++..++.+|.+.|++++|.+.++...+...
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 888888887754433 24677899999999999999999998876544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=5.5e-07 Score=77.66 Aligned_cols=92 Identities=12% Similarity=0.051 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCCh
Q 043060 477 CMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRW 554 (707)
Q Consensus 477 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 554 (707)
...+.|.+.|++++|+..|++. ...|+ ...|..+...+...|++++|...++++++++|++..+|..++.+|...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3456677888888888888875 45565 778888888888888888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHhhCC
Q 043060 555 DDVATIRTRLNDKG 568 (707)
Q Consensus 555 ~~a~~~~~~m~~~~ 568 (707)
++|.+.+++..+..
T Consensus 95 ~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 95 RAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 88888888887644
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=4.6e-07 Score=78.20 Aligned_cols=116 Identities=9% Similarity=0.039 Sum_probs=91.2
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCh
Q 043060 443 LSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRL 520 (707)
Q Consensus 443 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 520 (707)
...|.+.|++++|...|+++.+. .+.+...|..+..+|...|++++|+..|+++ ...|+ ..+|..++.++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 44567778888888888777763 2346677888888888888888888888876 55666 78999999999999999
Q ss_pred hHHHHHHHHHHccCCCCchhHHHHHHHh--hhcCChhhHHHH
Q 043060 521 ELGESVAKHLLELEPENPGAYVLLSNMY--AGAGRWDDVATI 560 (707)
Q Consensus 521 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 560 (707)
++|...++++++++|.++.++..+..+. ...+.++++...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998888776664 344556666544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.50 E-value=1.8e-07 Score=84.47 Aligned_cols=115 Identities=8% Similarity=-0.147 Sum_probs=88.9
Q ss_pred CCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 043060 434 PDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLL 511 (707)
Q Consensus 434 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll 511 (707)
|+...+......+.+.|++++|...|+.+++. .+.+...|..+..+|.+.|++++|+..|++. .+.|+ ..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 56666667777888888888888888877763 3346777888888899999999999988885 67776 77888999
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhh
Q 043060 512 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAG 550 (707)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 550 (707)
.++...|++++|...++++++++|++...+...+..+..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 999999999999999999998887665554444444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.49 E-value=8.3e-07 Score=85.27 Aligned_cols=194 Identities=8% Similarity=-0.042 Sum_probs=131.6
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----Hh
Q 043060 372 LWTSLIDMYAKCGNIKAAEQVFDGMGY-----KT----LASWNAMISGLAMHGKADKALSLFSRMIGEGLQ-PD----DI 437 (707)
Q Consensus 372 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~ 437 (707)
.|.....+|...|++++|.+.|.+... .+ ..+|+.+..+|.+.|++++|++.+++..+.-.. .+ ..
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 355567778888888888888876531 12 247888899999999999999999987652111 11 23
Q ss_pred HHHHHHHHHh-ccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--------
Q 043060 438 TFVGVLSACN-HAGLLDIGRQYFNAMIQDYKISPK----LQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-------- 503 (707)
Q Consensus 438 t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------- 503 (707)
++..+...|. ..|++++|.+.++...+-+....+ ..++..+...|...|++++|.+.|+++ ...|+
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 5556666664 469999999999887643211111 345778899999999999999999985 11111
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch-----hHHHHHHHhhh--cCChhhHHHHHHHHh
Q 043060 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG-----AYVLLSNMYAG--AGRWDDVATIRTRLN 565 (707)
Q Consensus 504 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~~m~ 565 (707)
...+...+..+...|+++.|...++++.+.+|..+. ....|+.++.. .+++++|+..|+++.
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 123445555677889999999999999999875433 34556666655 456888888776544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.39 E-value=2.9e-06 Score=81.35 Aligned_cols=174 Identities=9% Similarity=-0.009 Sum_probs=131.3
Q ss_pred CHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-hHHHHHHHHHhccCCHHHHHHHH
Q 043060 385 NIKAAEQVFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGE----GLQPDD-ITFVGVLSACNHAGLLDIGRQYF 459 (707)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~ 459 (707)
++++|.++|. .....|...|++++|++.|.+..+. +-.++. .+|..+..+|.+.|++++|.+.+
T Consensus 32 ~~~~Aa~~y~-----------~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLCV-----------QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHHH-----------HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHH-----------HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 4677776654 4577899999999999999998762 222222 37888899999999999999999
Q ss_pred HHhHHhcCCCCC----hHHHHHHHHHHHH-cCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 043060 460 NAMIQDYKISPK----LQHYGCMVDLLGR-AGLFDEAEALLKTM-------EMKPD-AAIWTSLLGACRVHGRLELGESV 526 (707)
Q Consensus 460 ~~~~~~~~~~p~----~~~~~~li~~~~~-~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~ 526 (707)
+...+-+.-..+ ...+..+...|.. .|++++|++.+++. +..+. ..++..++..+...|++++|...
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 977654322222 3456666777755 59999999999875 11122 45688899999999999999999
Q ss_pred HHHHHccCCCCch-------hHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 527 AKHLLELEPENPG-------AYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 527 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
++++....|.++. .+...+..+...|+++.|.+.+++..+...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999998776542 355677788899999999999998877543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=3e-06 Score=73.70 Aligned_cols=133 Identities=16% Similarity=0.055 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 043060 403 SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482 (707)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 482 (707)
.+......+.+.|++++|+..|++.++. -|....+ .+.-......+ ....|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~~------------~~~~~~~~~~~--------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF------------SNEEAQKAQAL--------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC------------CSHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcccc------------chHHHhhhchh--------HHHHHHHHHHHH
Confidence 4556667788888899999888888762 2211100 00000111111 123566788889
Q ss_pred HHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhH
Q 043060 483 GRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDV 557 (707)
Q Consensus 483 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 557 (707)
.+.|++++|+..+++. .+.|+ +.+|..++.++...|++++|...|+++++++|+|+.+...+..+..+.+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999885 56675 889999999999999999999999999999999999999999888776666554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.35 E-value=5.1e-05 Score=71.15 Aligned_cols=224 Identities=12% Similarity=0.004 Sum_probs=136.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHh
Q 043060 298 DVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLI 377 (707)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 377 (707)
|+..+..+...+.+.+++++|++.|++..+.| +...+ ..|.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~------------------------------------~~Lg 41 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGC------------------------------------FNLG 41 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHH------------------------------------HHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHH------------------------------------HHHH
Confidence 34556666666777778888888888776655 22222 2222
Q ss_pred hHHHh----cCCHHHHHHHHhcCCC-CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH--
Q 043060 378 DMYAK----CGNIKAAEQVFDGMGY-KTLASWNAMISGLAM----HGKADKALSLFSRMIGEGLQPDDITFVGVLSAC-- 446 (707)
Q Consensus 378 ~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-- 446 (707)
.+|.. ..+...|...++.... .+...+..+...+.. .++.+.|...+++....|.... ...+...+
T Consensus 42 ~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~ 118 (265)
T d1ouva_ 42 VLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHD 118 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHH
T ss_pred HHHHcCCCcchhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccC
Confidence 22222 2344444444443322 233333334333332 3556777777777776543221 11121111
Q ss_pred --hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 043060 447 --NHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR----AGLFDEAEALLKTMEMKPDAAIWTSLLGACRV---- 516 (707)
Q Consensus 447 --~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~---- 516 (707)
........+...+...... .+...+..|...|.. ..+...+...++...-..+......|...+..
T Consensus 119 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~ 194 (265)
T d1ouva_ 119 GKVVTRDFKKAVEYFTKACDL----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGA 194 (265)
T ss_dssp CSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred CCcccchhHHHHHHhhhhhcc----cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCccc
Confidence 2344566677766665442 455666677777765 44566777777765323466666677666665
Q ss_pred cCChhHHHHHHHHHHccCCCCchhHHHHHHHhhh----cCChhhHHHHHHHHhhCCC
Q 043060 517 HGRLELGESVAKHLLELEPENPGAYVLLSNMYAG----AGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 569 (707)
..+++.|+..|+++.+.+ ++.++..|+.+|.+ ..+.++|.+.|++..+.|.
T Consensus 195 ~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 195 TKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 568999999999998875 56788999999986 4489999999999998886
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.2e-06 Score=71.01 Aligned_cols=105 Identities=17% Similarity=-0.017 Sum_probs=79.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 043060 441 GVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGL---FDEAEALLKTM-EMKPD---AAIWTSLLGA 513 (707)
Q Consensus 441 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p~---~~~~~~ll~~ 513 (707)
.+++.+...+++++|.+.|+.... .-+.+..++..+..++.+.++ +++|+++++++ ...|+ ..+|..|+.+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 466677777888888888888776 334466777778888876554 45688888885 44444 3478889999
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 043060 514 CRVHGRLELGESVAKHLLELEPENPGAYVLLSNM 547 (707)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 547 (707)
|.+.|++++|++.++++++++|++..+...+..+
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 9999999999999999999999998766555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=7.2e-06 Score=71.16 Aligned_cols=65 Identities=9% Similarity=-0.052 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.+|+.+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...|++..+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 46777888999999999999999999999999999999999999999999999999999987543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=8.1e-07 Score=72.16 Aligned_cols=94 Identities=7% Similarity=-0.057 Sum_probs=79.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---CChhHHHHHHHHHHccCCCC--chhHHHHHHHh
Q 043060 476 GCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVH---GRLELGESVAKHLLELEPEN--PGAYVLLSNMY 548 (707)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~ 548 (707)
..+++.+...+++++|.+.|++. ...|+ ..++..+..++.+. +++++|+.+++++++.+|.+ ..++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45778888999999999999996 55565 78888999988764 45567999999999988754 34889999999
Q ss_pred hhcCChhhHHHHHHHHhhCCC
Q 043060 549 AGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~~ 569 (707)
.+.|++++|++.++++.+..+
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P 103 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEP 103 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhhHHHHHHHHHHHHhCc
Confidence 999999999999999987543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.24 E-value=1.2e-05 Score=68.42 Aligned_cols=64 Identities=11% Similarity=0.001 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
.+|..+..++.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...|++..+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4677788889999999999999999999999999999999999999999999999999987643
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.15 E-value=9.2e-06 Score=70.48 Aligned_cols=130 Identities=12% Similarity=0.036 Sum_probs=93.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHH
Q 043060 405 NAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISP-KLQHYGCMVDLLG 483 (707)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 483 (707)
......+...|++++|++.|+++++. .+ .........+.. .+.| ....|..+..+|.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~--~~----------~~~~~~~~~~~~----------~~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY--VE----------GSRAAAEDADGA----------KLQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--HH----------HHHHHSCHHHHG----------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--hh----------hhhhhhhhHHHH----------HhChhhHHHHHHHHHHHH
Confidence 34455677788888888888877641 11 000001111100 1112 3456777888999
Q ss_pred HcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhh
Q 043060 484 RAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 484 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 556 (707)
+.|++++|+..++++ .+.|+ ..+|..++.++...|++++|+..++++++++|+++.++..+..++.+.....+
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999986 77776 88999999999999999999999999999999999988888877765444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=3e-06 Score=69.68 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=78.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch-------hHHHHH
Q 043060 475 YGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPG-------AYVLLS 545 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l~ 545 (707)
+..+.+.|.+.|++++|++.|++. ...|+ ..+|..+..+|...|+++.|+..++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445778889999999999999886 55565 889999999999999999999999999999987765 566677
Q ss_pred HHhhhcCChhhHHHHHHHHhh
Q 043060 546 NMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 546 ~~~~~~g~~~~a~~~~~~m~~ 566 (707)
..+...+++++|++.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 888889999999999988764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.14 E-value=1.9e-05 Score=68.25 Aligned_cols=142 Identities=10% Similarity=-0.015 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 481 (707)
..+......+.+.|++++|+..|++.+.. .|... ....+. ......+ ....|+.+..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~~~-----------~~~~~~-~~~~~~~--------~~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEMEY-----------GLSEKE-SKASESF--------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCC-----------SCCHHH-HHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhh-----------ccchhh-hhhcchh--------HHHHHHhHHHH
Confidence 34556667777788888888888776541 11100 000000 0011111 12346667888
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhh-HH
Q 043060 482 LGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD-VA 558 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-a~ 558 (707)
|.+.|++++|+..+++. ...|+ ..+|..+..++...|++++|+..++++++++|+++.+...+..+....+...+ ..
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~k 153 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999986 55565 88999999999999999999999999999999999999999888877665543 44
Q ss_pred HHHHHHh
Q 043060 559 TIRTRLN 565 (707)
Q Consensus 559 ~~~~~m~ 565 (707)
+++..|-
T Consensus 154 k~~~~~f 160 (168)
T d1kt1a1 154 RTYANMF 160 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.13 E-value=1.1e-05 Score=69.86 Aligned_cols=65 Identities=11% Similarity=0.073 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 504 AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 504 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
...|..+...+.+.|++++|+..++++++++|+++.+|..++.+|...|++++|++.|++..+..
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 66788889999999999999999999999999999999999999999999999999999998754
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=8.8e-07 Score=92.14 Aligned_cols=95 Identities=13% Similarity=-0.020 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 471 KLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
+...+..+...+.+.|+.++|...+++.- .++ ..++..++..+...|++++|+..|+++++++|++..+|..|+.+|.
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp ------------------------CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 34455556666666666666665544321 111 3455566666777777777777777777777777777777777777
Q ss_pred hcCChhhHHHHHHHHhh
Q 043060 550 GAGRWDDVATIRTRLND 566 (707)
Q Consensus 550 ~~g~~~~a~~~~~~m~~ 566 (707)
..|+..+|...|.+...
T Consensus 198 ~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HTTCHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 77777777776666654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.05 E-value=1.7e-05 Score=67.41 Aligned_cols=127 Identities=9% Similarity=-0.070 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 481 (707)
..+......+.+.|++.+|+..|++.+.. -|.... ..-......... .....|+.+..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~-----------~~~~~~~~~~~~--------~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEE-----------WDDQILLDKKKN--------IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTT-----------CCCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhh-----------hhhHHHHHhhhh--------HHHHHHhhHHHH
Confidence 45677778888999999999999998873 221110 000000000000 123467778889
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 482 LGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
|.+.|++++|++.+++. ...|+ ..+|..++.++...|++++|...++++++++|+|+.+...+..+..
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999985 56675 8899999999999999999999999999999999888777766543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.03 E-value=5.8e-05 Score=65.08 Aligned_cols=64 Identities=8% Similarity=-0.014 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCC
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKG 568 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 568 (707)
.+|+.+..++.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...++++.+..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4566788889999999999999999999999999999999999999999999999999988754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.90 E-value=3.4e-05 Score=61.31 Aligned_cols=85 Identities=8% Similarity=-0.076 Sum_probs=36.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcC
Q 043060 408 ISGLAMHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAG 486 (707)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 486 (707)
...+.+.|++++|+..|++.+. ..|+. .+|..+..++.+.|++++|...|+...+. .+.+...|..+...|...|
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCC
Confidence 3334444555555555555544 33332 24444444444444444444444444331 1123333444444444444
Q ss_pred CHHHHHHHHH
Q 043060 487 LFDEAEALLK 496 (707)
Q Consensus 487 ~~~~A~~~~~ 496 (707)
++++|++.++
T Consensus 99 ~~~~A~~~l~ 108 (112)
T d1hxia_ 99 NANAALASLR 108 (112)
T ss_dssp HHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4444444433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=5.7e-06 Score=85.80 Aligned_cols=74 Identities=12% Similarity=0.048 Sum_probs=34.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHh
Q 043060 475 YGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMY 548 (707)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 548 (707)
+..+.+++...|++++|...|++. ...|+ ...|+.|+..+...|+..+|...|.+++...|+.+.++..|+.++
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 334444444444444444444443 33333 344444444444444444444444444444444444444444444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.87 E-value=1.9e-05 Score=66.19 Aligned_cols=124 Identities=9% Similarity=0.045 Sum_probs=73.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 043060 411 LAMHGKADKALSLFSRMIGEGLQPDDI-TFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFD 489 (707)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 489 (707)
|.+.+.+++|++.|++..+ +.|+.. ++..+..++...+++..+.+ ..+.++
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e--------------------------~~~~~~ 58 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISD--------------------------AKQMIQ 58 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHH--------------------------HHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhH--------------------------HHHHHH
Confidence 4455667777777777766 555554 45555545443322211111 112334
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-----------ChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhh
Q 043060 490 EAEALLKTM-EMKPD-AAIWTSLLGACRVHG-----------RLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 490 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 556 (707)
+|++.|++. .+.|+ ..+|..++.+|...| +++.|.+.|+++++++|++...+..|... .+
T Consensus 59 ~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~k 131 (145)
T d1zu2a1 59 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AK 131 (145)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HT
T ss_pred HHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HH
Confidence 455555543 34444 555666665555443 46889999999999999998776666655 36
Q ss_pred HHHHHHHHhhCCC
Q 043060 557 VATIRTRLNDKGM 569 (707)
Q Consensus 557 a~~~~~~m~~~~~ 569 (707)
|.+++.+..++|+
T Consensus 132 a~~~~~e~~k~~~ 144 (145)
T d1zu2a1 132 APQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhc
Confidence 6777777777665
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.81 E-value=0.015 Score=54.99 Aligned_cols=280 Identities=11% Similarity=0.087 Sum_probs=151.6
Q ss_pred CCCHhhHHHHHHHHhccCCchHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHH
Q 043060 230 VPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGY 309 (707)
Q Consensus 230 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 309 (707)
.||..-...+..-|.+.|.++.|..++..+. -+..++..|.+.++++.|.+++.+. .+..+|..+...+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l 79 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFAC 79 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence 3565666677778888888888888887432 3556778888899999988888765 3566888888888
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCChhhHHhHHHHHhccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHhcCCHHHH
Q 043060 310 THTSDYKEALMLFRQMLQSNIEPNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAA 389 (707)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 389 (707)
.+.....-| ++.......+......++..+-..|..+....+++..... ...+..+++-|+.+|++.+ .++-
T Consensus 80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~--~~~~~~~~~~L~~lyak~~-~~kl 151 (336)
T d1b89a_ 80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFK-PQKM 151 (336)
T ss_dssp HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTC-HHHH
T ss_pred HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC--CccchHHHHHHHHHHHHhC-hHHH
Confidence 877665433 2333334455566677888888888888888888876543 2337778888998888875 3455
Q ss_pred HHHHhcCCCC-ChH----------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHH
Q 043060 390 EQVFDGMGYK-TLA----------SWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQY 458 (707)
Q Consensus 390 ~~~~~~~~~~-~~~----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 458 (707)
.+.+...... |+. .|..++-.|.+.|++++|+.+. .+ -.++..-....+..+.+.++.+...++
T Consensus 152 ~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~--~~~~~~~~~~f~e~~~k~~N~e~~~~~ 226 (336)
T d1b89a_ 152 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MN--HPTDAWKEGQFKDIITKVANVELYYRA 226 (336)
T ss_dssp HHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HH--STTTTCCHHHHHHHHHHCSSTHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HH--cchhhhhHHHHHHHHHccCChHHHHHH
Confidence 5555543221 211 2444555555555555554432 22 122322233333444444444444443
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 043060 459 FNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENP 538 (707)
Q Consensus 459 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 538 (707)
.....+. .| ...+.++......-+..+.. .-+.+.+++......++...+.+ +.
T Consensus 227 i~~yL~~---~p--~~i~~lL~~v~~~~d~~r~V-------------------~~~~k~~~l~li~p~Le~v~~~n--~~ 280 (336)
T d1b89a_ 227 IQFYLEF---KP--LLLNDLLMVLSPRLDHTRAV-------------------NYFSKVKQLPLVKPYLRSVQNHN--NK 280 (336)
T ss_dssp HHHHHHH---CG--GGHHHHHHHHGGGCCHHHHH-------------------HHHHHTTCTTTTHHHHHHHHTTC--CH
T ss_pred HHHHHHc---CH--HHHHHHHHHhccCCCHHHHH-------------------HHHHhcCCcHHHHHHHHHHHHcC--hH
Confidence 3333221 12 12233333333333333333 33445555666666666654433 44
Q ss_pred hhHHHHHHHhhhcCChhhHHH
Q 043060 539 GAYVLLSNMYAGAGRWDDVAT 559 (707)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~a~~ 559 (707)
.++..|..+|...++++.-++
T Consensus 281 ~vn~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 281 SVNESLNNLFITEEDYQALRT 301 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCcchhHHHHH
Confidence 677888888888888655433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.77 E-value=0.0001 Score=63.97 Aligned_cols=111 Identities=17% Similarity=0.073 Sum_probs=79.1
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043060 442 VLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLF--DEAEALLKTMEMKPDAAIWTSLLGACRVHGR 519 (707)
Q Consensus 442 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 519 (707)
........|++++|.+.|.....-+.-.+-... ..+.+ .++..+ +. -....+..++..+...|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w~~~~r~~l-~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQFVEPFATAL-VE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTTHHHHHHHH-HH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHHHHHHHHHH-HH----HHHHHHHHHHHHHHHCCC
Confidence 344567778888888888877653221110000 00000 011111 10 024678889999999999
Q ss_pred hhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 043060 520 LELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLND 566 (707)
Q Consensus 520 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 566 (707)
+++|...++++++.+|.+...|..++.+|.+.|++++|.+.|+++.+
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999854
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.77 E-value=0.0056 Score=56.48 Aligned_cols=227 Identities=11% Similarity=-0.060 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChhhHHhHHH
Q 043060 268 LHVTNALIDMYSKCGDLVKARDLFESIEK-RDVISWNVMIGGYTH----TSDYKEALMLFRQMLQSNIEPNDVTFLSVLP 342 (707)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (707)
+..+..|...+.+.|++++|.+.|++..+ .|..++..|...|.. ..+...|...+......+. |. ....+..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-~~--a~~~l~~ 78 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-SN--GCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HH--HHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-cc--hhhcccc
Confidence 44556666677777788888888877653 355566566666654 5567777777777666542 21 1111211
Q ss_pred HH----hccCCchHHHHHHHHHHHhCCCCCcHHHHhHHhhHHHh----cCCHHHHHHHHhcCC-CCChHHHHHHHHHHHH
Q 043060 343 AC----AYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAK----CGNIKAAEQVFDGMG-YKTLASWNAMISGLAM 413 (707)
Q Consensus 343 ~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~ 413 (707)
.+ ....+.+.+...+....+.|.. .....+...+.. ......|...+.... ..+...+..+...|..
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~----~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKYA----EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHhhhhhhhhh----hHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 11 1234455566666665555432 122222222221 223333333333321 2233333333333332
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH----cCCHH
Q 043060 414 HGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR----AGLFD 489 (707)
Q Consensus 414 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~ 489 (707)
.. ....+...+..+++...+. .+......|...|.. ..+++
T Consensus 155 ~~-------------------------------~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 155 GR-------------------------------GTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp TS-------------------------------SSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred CC-------------------------------Ccccccccchhhhhccccc----cccccccchhhhcccCcccccchh
Confidence 00 0123444444454444331 233444444444444 45677
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCC
Q 043060 490 EAEALLKTMEMKPDAAIWTSLLGACRV----HGRLELGESVAKHLLELEPE 536 (707)
Q Consensus 490 ~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~ 536 (707)
+|...|++....-++..+..|...|.. ..+.++|.+.|+++.+.++.
T Consensus 200 ~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 200 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 777777765222245666666666654 34788888888888887753
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.68 E-value=0.024 Score=53.62 Aligned_cols=114 Identities=12% Similarity=0.132 Sum_probs=44.8
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 043060 93 PNQVIWNNIIRGHSLSSSPVVAIKFYVRMILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLI 172 (707)
Q Consensus 93 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 172 (707)
+|..--..+..-|.+.|.++.|..+|..+. -|..++..+.+.+++..|.++.... .+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 333333444555556666666666665332 2444555555555555554444321 2344555555
Q ss_pred HHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhC
Q 043060 173 NMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEM 222 (707)
Q Consensus 173 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 222 (707)
..+.+......|.-. ......+......++..|-..|.+++...+++..
T Consensus 77 ~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~ 125 (336)
T d1b89a_ 77 FACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAA 125 (336)
T ss_dssp HHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 555554444333211 1111112233344555555555555555555543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.66 E-value=8.6e-05 Score=63.06 Aligned_cols=89 Identities=18% Similarity=0.052 Sum_probs=67.7
Q ss_pred HHHHHHcCCHHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--------
Q 043060 479 VDLLGRAGLFDEAEALLKTM----EMKPD----------AAIWTSLLGACRVHGRLELGESVAKHLLELEPE-------- 536 (707)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~----~~~p~----------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~-------- 536 (707)
...+.+.|++++|++.|++. +..|+ ..+|+.+..++...|++++|...+++++++.|.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 44455667777777777664 22222 467888999999999999999999999875432
Q ss_pred ---CchhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 537 ---NPGAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 537 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
...++..++.+|...|++++|.+.|++..+.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1236788999999999999999999998764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.00014 Score=55.51 Aligned_cols=74 Identities=20% Similarity=0.140 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM--------EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLL 544 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 544 (707)
.+-.+...+.+.|++++|+..|++. ...++ ..++..|..++.+.|++++|+..++++++++|+++.++..+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 3345667777778877777777664 11233 67889999999999999999999999999999999888877
Q ss_pred HHH
Q 043060 545 SNM 547 (707)
Q Consensus 545 ~~~ 547 (707)
...
T Consensus 87 ~~~ 89 (95)
T d1tjca_ 87 KYF 89 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.63 E-value=1.7e-05 Score=66.56 Aligned_cols=87 Identities=16% Similarity=0.142 Sum_probs=63.9
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh----------cCChhHHHHHHHHHHccCCCCchhHHHHHHHhh
Q 043060 482 LGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRV----------HGRLELGESVAKHLLELEPENPGAYVLLSNMYA 549 (707)
Q Consensus 482 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~----------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 549 (707)
|-|.+.+++|++.|+.. ...|+ ..+|..+..++.. .+.+++|+..++++++++|+++.+|..++.+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 34555566666666664 44454 5566666655543 345688999999999999999999999999998
Q ss_pred hcCC-----------hhhHHHHHHHHhhCC
Q 043060 550 GAGR-----------WDDVATIRTRLNDKG 568 (707)
Q Consensus 550 ~~g~-----------~~~a~~~~~~m~~~~ 568 (707)
..|+ +++|.+.|++..+..
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 8764 578888888887644
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.00037 Score=56.61 Aligned_cols=103 Identities=11% Similarity=0.050 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 043060 404 WNAMISGLAMHGKADKALSLFSRMIGEGLQPD-DITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLL 482 (707)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 482 (707)
+..+...|.+.|++++|+..|++.++ +.|+ ...+..+..+|.+.|++++|...++.+++-..-.+. .|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~--~~~~~---- 78 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE--DYRQI---- 78 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT--CHHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHH--HHHHH----
Confidence 34445555556666666666666555 3333 234444555555555555555555554431000000 00000
Q ss_pred HHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 043060 483 GRAGLFDEAEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP 535 (707)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 535 (707)
..+|..+...+...+++++|...+++.+..+|
T Consensus 79 ---------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 79 ---------------------AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ---------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 23455566666666777777777777766655
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.27 E-value=0.00034 Score=64.73 Aligned_cols=123 Identities=16% Similarity=0.070 Sum_probs=67.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHH
Q 043060 413 MHGKADKALSLFSRMIGEGLQPDD-ITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPK-LQHYGCMVDLLGRAGLFDE 490 (707)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 490 (707)
+.|++++|+..+++.++ ..|+. ..+..+...++..|++++|...|+...+. .|+ ...+..+..++...+..++
T Consensus 8 ~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence 45667777777777766 45544 35666666667777777777766666542 232 3334444444443344333
Q ss_pred HHHHHHhC--CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 043060 491 AEALLKTM--EMKPD-AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540 (707)
Q Consensus 491 A~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 540 (707)
+..-.... ...|+ ...+...+..+...|+.++|.+.++++.+..|..+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 33222221 11222 2333344455666777777777777777777665543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.26 E-value=0.00011 Score=68.18 Aligned_cols=122 Identities=13% Similarity=0.087 Sum_probs=90.9
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 043060 446 CNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELG 523 (707)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A 523 (707)
..+.|++++|...+++.++ ..+.+...+..+..+|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 3467999999999999987 45568899999999999999999999999996 56676 66666666666555444443
Q ss_pred HHHHHHHHc-cCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 524 ESVAKHLLE-LEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 524 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
......... .+|++...+...+..+...|+.++|.+.++++.+...
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 332222112 2344455666778889999999999999999887543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.0009 Score=50.77 Aligned_cols=65 Identities=14% Similarity=-0.027 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-------chhHHHHHHHhhhcCChhhHHHHHHHHhhCCC
Q 043060 505 AIWTSLLGACRVHGRLELGESVAKHLLELEPEN-------PGAYVLLSNMYAGAGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 505 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 569 (707)
..+-.++..+.+.|+++.|...+++++++.|.+ ..++..|+.+|.+.|++++|+..++++.+..+
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P 77 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc
Confidence 344577889999999999999999999875543 45789999999999999999999999987543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.19 E-value=0.0014 Score=55.05 Aligned_cols=64 Identities=22% Similarity=0.102 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 043060 474 HYGCMVDLLGRAGLFDEAEALLKTM--------EMKPD-----AAIWTSLLGACRVHGRLELGESVAKHLLELEPEN 537 (707)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 537 (707)
.|+.+..+|...|++++|.+-+++. ...++ ..++..+..++...|++++|...|++++++.|..
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 3445555566666666555555442 12222 2356778899999999999999999999886543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.17 E-value=0.0024 Score=54.88 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=64.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc
Q 043060 406 AMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRA 485 (707)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 485 (707)
.........|++++|.+.|.+.+. +.+...- ..+. .+.+ +...-..+.. .....+..+...+.+.
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~--l~rG~~l-----~~~~-~~~w--~~~~r~~l~~-----~~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALR--EWRGPVL-----DDLR-DFQF--VEPFATALVE-----DKVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT--TCCSSTT-----GGGT-TSTT--HHHHHHHHHH-----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh--hCccccc-----ccCc-chHH--HHHHHHHHHH-----HHHHHHHHHHHHHHHC
Confidence 344556777888888888888776 3332210 0000 0100 0011111111 1234556677777778
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043060 486 GLFDEAEALLKTM-EMKPD-AAIWTSLLGACRVHGRLELGESVAKHL 530 (707)
Q Consensus 486 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~ 530 (707)
|++++|+..++++ ...|. ...|..++.++...|+.++|++.|+++
T Consensus 81 g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 81 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8888888877775 45554 777788888888888888888777776
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.68 E-value=0.36 Score=47.73 Aligned_cols=58 Identities=7% Similarity=-0.059 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 043060 271 TNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSN 329 (707)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 329 (707)
....+..+.+.++++.....|..-+ .+...-.....+....|+.++|...+..+-..|
T Consensus 75 r~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 75 QSRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 3444566677778777666554322 234444456667777888888887777665544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.52 E-value=0.05 Score=41.63 Aligned_cols=141 Identities=11% Similarity=0.090 Sum_probs=95.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 043060 411 LAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDE 490 (707)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 490 (707)
+.-.|..++..++..+... ..+..-|+.++.-....-+-+...+.++.+-+-+.+. .++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 3445677777777777665 2334455666655555566666666666654433332 2333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhhHHHHHHHHhhCCCc
Q 043060 491 AEALLKTMEMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMK 570 (707)
Q Consensus 491 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 570 (707)
...-+-.++ .+......-++....+|+-+.-.+++..+++-+..+|.....++++|-+.|...++.+++.+.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 333333332 234555667788889999999999999988877778899999999999999999999999999999984
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.91 E-value=0.094 Score=40.60 Aligned_cols=65 Identities=8% Similarity=-0.022 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHhc---CChhHHHHHHHHHHccCCCCc-hhHHHHHHHhhhcCChhhHHHHHHHHhhC
Q 043060 503 DAAIWTSLLGACRVH---GRLELGESVAKHLLELEPENP-GAYVLLSNMYAGAGRWDDVATIRTRLNDK 567 (707)
Q Consensus 503 ~~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 567 (707)
...+.-.+..++.+. .+.++|+.+++++++.+|.+. ..+..|+.+|.+.|++++|.+.++.+.+.
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 333444444455443 344566666666666666543 46666667777777777777776666653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.39 E-value=0.18 Score=40.04 Aligned_cols=50 Identities=8% Similarity=0.007 Sum_probs=36.3
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHHhhh----cCChhhHHHHHHHHhhCCC
Q 043060 518 GRLELGESVAKHLLELEPENPGAYVLLSNMYAG----AGRWDDVATIRTRLNDKGM 569 (707)
Q Consensus 518 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 569 (707)
.|.++|.+.++++.+.+ ++.+...|+.+|.. ..+.++|.+++++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 45677778887777654 45677777777776 4577788888888877775
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.72 E-value=0.44 Score=37.61 Aligned_cols=111 Identities=9% Similarity=-0.074 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH----cCCHHHH
Q 043060 416 KADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGR----AGLFDEA 491 (707)
Q Consensus 416 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 491 (707)
|+++|+++|++..+.|.. .....|. .....+.++|..+++...+. | +......|..+|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 567888888888776522 2222222 23456788888888877653 2 44555556666654 4567888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCC
Q 043060 492 EALLKTMEMKPDAAIWTSLLGACRV----HGRLELGESVAKHLLELEP 535 (707)
Q Consensus 492 ~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p 535 (707)
.+.|++.-..-++.....|...|.. ..|.++|.+.++++.+.+.
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 8888886222345555666666655 4688899999999888764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.48 E-value=0.43 Score=36.74 Aligned_cols=71 Identities=14% Similarity=0.039 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHHHHcC---CHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 043060 470 PKLQHYGCMVDLLGRAG---LFDEAEALLKTM-EMKPD--AAIWTSLLGACRVHGRLELGESVAKHLLELEPENPGA 540 (707)
Q Consensus 470 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 540 (707)
|+..+--...-++.+.. +.++++.++++. ...|+ ...|-.|.-+|.+.|+++.|.+.++++++++|+|..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 34444334444555543 355677777775 23343 3577788888999999999999999999999998654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=87.23 E-value=4.8 Score=30.49 Aligned_cols=136 Identities=14% Similarity=0.072 Sum_probs=94.9
Q ss_pred HhcCCHHHHHHHHhcCC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHH
Q 043060 381 AKCGNIKAAEQVFDGMG-YKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYF 459 (707)
Q Consensus 381 ~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 459 (707)
.-.|.+++..+++.+.. ..+..-||-+|.-....-+-+-..+.++..-.. + |. ...+++.....-+
T Consensus 13 ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-F--Dl----------s~C~Nlk~vv~C~ 79 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSVVECG 79 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHHHHHH
T ss_pred HHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhh-c--Cc----------hhhhcHHHHHHHH
Confidence 34678888888887764 346667787887777777777777777665431 1 11 1223333333333
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 043060 460 NAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTM--EMKPDAAIWTSLLGACRVHGRLELGESVAKHLLELEP 535 (707)
Q Consensus 460 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 535 (707)
-.+ ..+..+...-++.+..+|+-+.-.++.+.+ .-+|++.....+..+|.+.|+..++-+++.++-+.+-
T Consensus 80 ~~~------n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 80 VIN------NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHh------cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 222 134556667778889999999999998884 4568888899999999999999999999998887654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=86.02 E-value=16 Score=35.13 Aligned_cols=353 Identities=11% Similarity=-0.003 Sum_probs=197.2
Q ss_pred HHHHHHHHhCCChhHHHHHHhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHhCccccCCCCCCHhhHHHHHHHHhccCC
Q 043060 169 TSLINMYAQNGELESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPIREENFVPNESTVVTVLSACAHMGS 248 (707)
Q Consensus 169 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p~~~t~~~ll~~~~~~g~ 248 (707)
...+..+.+.++++.....+..-+ .+...--....+..+.|+.++|...+...-. .....|+
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~-~~~~~p~---------------- 137 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWL-TGKSQPN---------------- 137 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS-CSSCCCT----------------
T ss_pred HHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCCch----------------
Confidence 344566778888888777665433 2444444667788889999999888876532 1222332
Q ss_pred chHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 043060 249 LELGNWVCSLIEGHGLGSNLHVTNALIDMYSKCGDLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQS 328 (707)
Q Consensus 249 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 328 (707)
....++..+.+.|. .+...+-.-+......|+...|..+...+...........+........ +......
T Consensus 138 --~c~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~---~~~~~~~---- 207 (450)
T d1qsaa1 138 --ACDKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNT---VLTFART---- 207 (450)
T ss_dssp --HHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGG---HHHHHHH----
T ss_pred --HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHh---HHHHHhc----
Confidence 23345555555543 3334444455666777899999999988776554455555554433222 2222111
Q ss_pred CCCCChhhHHhHHHHHhc--cCCchHHHHHHHHHHHhCCCCCcHHH---HhHHhhHHHhcCCHHHHHHHHhcCC--CCCh
Q 043060 329 NIEPNDVTFLSVLPACAY--LGALDLGKWIHAYIDKNHQKLNNVSL---WTSLIDMYAKCGNIKAAEQVFDGMG--YKTL 401 (707)
Q Consensus 329 g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~li~~y~~~g~~~~A~~~~~~~~--~~~~ 401 (707)
..++......+..+..+ ..+.+.+...+.......... .... ...+.......+..+.|...+.... ..+.
T Consensus 208 -~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 285 (450)
T d1qsaa1 208 -TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLN-EDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST 285 (450)
T ss_dssp -SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH
T ss_pred -CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhccccc-HHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccch
Confidence 11222222222333322 235666666666665544332 2211 1222223334556666666665442 2233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 043060 402 ASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGLLDIGRQYFNAMIQDYKISPKLQHYGCMVDL 481 (707)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 481 (707)
....-.+......+++..+...++.|... ..-...-.--+..+....|+.++|..+|..+.. .++ .|..|...
T Consensus 286 ~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~ 358 (450)
T d1qsaa1 286 SLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ 358 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH
Confidence 33333444455678888888888877432 111222334466788889999999999998753 133 44443321
Q ss_pred HHHcCCHHHHHHHH-HhCCCCCCH-HH---HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHhhhcCChhh
Q 043060 482 LGRAGLFDEAEALL-KTMEMKPDA-AI---WTSLLGACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDD 556 (707)
Q Consensus 482 ~~~~g~~~~A~~~~-~~~~~~p~~-~~---~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 556 (707)
+.|..-. +- ...+..++. .. -..-+..+...|....|...+..+.+.. ++.-...++....+.|.++.
T Consensus 359 --~Lg~~~~---~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~ 431 (450)
T d1qsaa1 359 --RIGEEYE---LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDL 431 (450)
T ss_dssp --HTTCCCC---CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHH
T ss_pred --HcCCCCC---CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhH
Confidence 2222100 00 000111111 11 1123456678899999999988887543 45677888999999999999
Q ss_pred HHHHHHHHh
Q 043060 557 VATIRTRLN 565 (707)
Q Consensus 557 a~~~~~~m~ 565 (707)
|+....+..
T Consensus 432 aI~a~~~~~ 440 (450)
T d1qsaa1 432 SVQATIAGK 440 (450)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 998776653
|