Citrus Sinensis ID: 043068

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520------
Protein Sequence
MATPRRSLTNISQIPDQSILVTSITSVIQRLNPQNPSPKNISSQPLDQFSLCLGSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISRFVFVHQVVVIMERTVEDGKRSECLIVSF
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccccEEHHHHHHHHHHcccHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHcccHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHEEEcc
Coil and Loop (DISEMBL)
matprrsltnisqipdqsilVTSITSVIQrlnpqnpspknissqpldqfslclgsnivTKVIYeqtnpyhalfffnwasnpnpnpnkyhhttpcyTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKenvvppdvstyTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMmnrgcrpneltYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLcvvgkfdqAVGYLRNVMeanmnpdvkSYEVVINGFCKIGKSDEAISLLKEMRarglkptvfSFNAVFRILVENGELDRAILLLkqmpqmdclpnfvsynTIICGLcmakgrmqdVEDLVDRMIrsghnldfTMYSCLLKgyceegnvENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISRFVFVHQVVVIMERtvedgkrseclivsf
Flexible Loop (DISEMBL)
matprrsltnisqipdqsiLVTSITSVIQRLNPQNPSPKNISSQPLDQFSLCLGSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQivkenvvppdvstYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISRFVFVHQVVVIMErtvedgkrseclivsf
Low Complexity Region (SEG)
MATPRRSLTNISQIPDQSILVTSITSVIQRLNPQNPSPKNISSQPLDQFSLCLGSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVllshslisiaasllKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISRFVFVHQVVVIMERTVEDGKRSECLIVSF
Disordered region (IsUnstruct)
******************ILVTSITSVI******************DQFSLCLGSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISRFVFVHQVVVIMERTVEDG****CL****
Disordered Region (DISOPRED)
********************VTSITSVIQRLNPQNPS***I**QPLDQFSLCLGSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISRFVFVHQVVVIMERTVEDGKRSECLIVSF
Disordered Region (DISEMBL)
*********NISQIPDQSILVTSITSVIQRLNPQNPSPKNISSQPLDQFSLCLGSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISRFVFVHQVVVIMERTVEDGKRSECLIVSF
Disordered Region (DISPRO)
MATPRRSLTNISQIPDQSILVTSITSVIQRLNPQNPSPKNISSQPLDQFSLCLGSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISRFVFVHQVVVIMERTVEDGKRSECLIVSF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATPRRSLTNISQIPDQSILVTSITSVIQRLNPQNPSPKNISSQPLDQFSLCLGSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISRFVFVHQVVVIMERTVEDGKRSECLIVSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	526	2.2.26 [Sep-21-2011]
Q3EDF8	598	Pentatricopeptide repeat-	yes	no	0.538	0.473	0.334	5e-49
Q9FIX3	747	Pentatricopeptide repeat-	no	no	0.846	0.595	0.256	3e-46
Q0WVK7	741	Pentatricopeptide repeat-	no	no	0.583	0.414	0.292	5e-44
Q9SAJ5	780	Pentatricopeptide repeat-	no	no	0.807	0.544	0.258	6e-44
O81908	710	Pentatricopeptide repeat-	no	no	0.731	0.542	0.263	2e-43
Q9M9X9	987	Pentatricopeptide repeat-	no	no	0.678	0.361	0.261	5e-43
Q9LFF1	754	Pentatricopeptide repeat-	no	no	0.642	0.448	0.280	6e-42
Q9T0D6	566	Pentatricopeptide repeat-	no	no	0.579	0.538	0.283	2e-40
O04491	607	Putative pentatricopeptid	no	no	0.534	0.462	0.308	2e-40
Q9LSL9	915	Pentatricopeptide repeat-	no	no	0.825	0.474	0.258	1e-39

>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1

 Score =  196 bits (497), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 95/284 (33%), Positives = 165/284 (58%), Gaps = 1/284 (0%)

Query: 183 QIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGEL 242
           +I++ +   PDV TY  MI GYCK G I NA  V D M+V P+++ YNT++   C  G+L
Sbjct: 161 EILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKL 220

Query: 243 EEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSM 302
           ++A + ++ M+ R C P+ +TY  +I   C +  V  A  L+ +MR  G   +V T+  +
Sbjct: 221 KQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVL 280

Query: 303 LKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGL 362
           + G+C  G+ D+A+ +L ++  +   P+V ++ +++   C  G+  +A  LL +M  +G 
Sbjct: 281 VNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF 340

Query: 363 KPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVE 422
            P+V +FN +   L   G L RAI +L++MPQ  C PN +SYN ++ G C  K +M    
Sbjct: 341 SPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEK-KMDRAI 399

Query: 423 DLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTK 466
           + ++RM+  G   D   Y+ +L   C++G VE+ ++I +++ +K
Sbjct: 400 EYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSK 443

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1

 Score =  186 bits (473), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 143/558 (25%), Positives = 250/558 (44%), Gaps = 113/558 (20%)

Query: 5   RRSLTNISQIPDQSILVTSITSVIQRLNPQNPSPKNISSQPLDQFSLCLGSNIVTKVIYE 64
           RRSL+  +  P  S+L     + ++R       P  +     + F+    SN++ K    
Sbjct: 9   RRSLSTFASSPSDSLLADKALTFLKR------HPYQLHHLSAN-FTPEAASNLLLK---S 58

Query: 65  QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKN--SNKLS 122
           Q +    L F NWA     NP+++  T  C      +L    L   A  L ++  +  L 
Sbjct: 59  QNDQALILKFLNWA-----NPHQFF-TLRCKCITLHILTKFKLYKTAQILAEDVAAKTLD 112

Query: 123 DFFISKL---------------------IKAYGDRGNVKAAIFWFHQAKQIENGACLYSY 161
           D + S +                     +K+Y     +  A+   H A+       + SY
Sbjct: 113 DEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSY 172

Query: 162 NSLLGVLVRVN-SIKLAEEFFHQIVKENVVP----------------------------- 191
           N++L   +R   +I  AE  F ++++  V P                             
Sbjct: 173 NAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKME 232

Query: 192 -----PDVSTYTTMIRGYCKMGMIENAKKVFDVMTVK---PNLLAYNTMINGFCKKGELE 243
                P+V TY T+I GYCK+  I++  K+   M +K   PNL++YN +ING C++G ++
Sbjct: 233 TKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMK 292

Query: 244 EAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSML 303
           E    + EM  RG   +E+TYN +I G C  G   +A ++ A+M  +G   +V T+ S++
Sbjct: 293 EVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLI 352

Query: 304 KGLCVVGKFDQAV----------------------------GY-------LRNVMEANMN 328
             +C  G  ++A+                            GY       LR + +   +
Sbjct: 353 HSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFS 412

Query: 329 PDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILL 388
           P V +Y  +ING C  GK ++AI++L++M+ +GL P V S++ V      + ++D A+ +
Sbjct: 413 PSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRV 472

Query: 389 LKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYC 448
            ++M +    P+ ++Y+++I G C  + R ++  DL + M+R G   D   Y+ L+  YC
Sbjct: 473 KREMVEKGIKPDTITYSSLIQGFCEQR-RTKEACDLYEEMLRVGLPPDEFTYTALINAYC 531

Query: 449 EEGNVENVMQIAHEMVTK 466
            EG++E  +Q+ +EMV K
Sbjct: 532 MEGDLEKALQLHNEMVEK 549

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1

 Score =  179 bits (454), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 174/345 (50%), Gaps = 38/345 (11%)

Query: 159 YSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVP--------------------------- 191
           Y Y S++G+L R+  +  AEE F +++++ ++P                           
Sbjct: 317 YIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYE 376

Query: 192 -------PDVSTYTTMIRGYCKMGMIENAKKVFDVMTVK---PNLLAYNTMINGFCKKGE 241
                  PDV TYT +I G+C++G +  A K+F  M  K   P+ + +  +ING+CK G 
Sbjct: 377 MHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGH 436

Query: 242 LEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKS 301
           +++A +  N M+  GC PN +TY  +I GLC  G +D A  L+ +M   G + N+ T+ S
Sbjct: 437 MKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNS 496

Query: 302 MLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARG 361
           ++ GLC  G  ++AV  +     A +N D  +Y  +++ +CK G+ D+A  +LKEM  +G
Sbjct: 497 IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG 556

Query: 362 LKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDV 421
           L+PT+ +FN +      +G L+    LL  M      PN  ++N+++   C+ +  ++  
Sbjct: 557 LQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCI-RNNLKAA 615

Query: 422 EDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTK 466
             +   M   G   D   Y  L+KG+C+  N++    +  EM  K
Sbjct: 616 TAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGK 660

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAJ5|PP133_ARATH Pentatricopeptide repeat-containing protein At1g79540 OS=Arabidopsis thaliana GN=At1g79540 PE=2 SV=1

 Score =  179 bits (453), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 223/448 (49%), Gaps = 23/448 (5%)

Query: 24  ITSVIQRLNPQNPSPKNISSQPLDQFSLCLGSNIVTKVIYEQTNPYHALFFFNWASNPNP 83
           + S++ +  P  P+      +PL  F   L  NI+T VI ++ N      FF WAS    
Sbjct: 37  VISILAKKKPIEPAL-----EPLVPF---LSKNIITSVIKDEVNRQLGFRFFIWASR--- 85

Query: 84  NPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNK----LSDFFISKLIKAYGDRGNV 139
              +   +   +  + D+L   +   +    L+        +  +    LI AY   G  
Sbjct: 86  --RERLRSRESFGLVIDMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKMGMA 143

Query: 140 KAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSI-KLAEEFFHQIVKENVVPPDVSTYT 198
           + A+  F + K+ +    +++YN +L V++R      LA   +++++K N   P++ T+ 
Sbjct: 144 EKAVESFGRMKEFDCRPDVFTYNVILRVMMREEVFFMLAFAVYNEMLKCNC-SPNLYTFG 202

Query: 199 TMIRGYCKMGMIENAKKVFDVMT---VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNR 255
            ++ G  K G   +A+K+FD MT   + PN + Y  +I+G C++G  ++A+K   EM   
Sbjct: 203 ILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTS 262

Query: 256 GCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQA 315
           G  P+ + +NA++ G C  GR+ EA  L+     +GF   +  + S++ GL    ++ QA
Sbjct: 263 GNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQA 322

Query: 316 VGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRI 375
                N+++ N+ PD+  Y ++I G  K GK ++A+ LL  M ++G+ P  + +NAV + 
Sbjct: 323 FELYANMLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKA 382

Query: 376 LVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNL 435
           L   G L+    L  +M + +  P+  ++  +IC +C   G +++ E++   + +SG + 
Sbjct: 383 LCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMC-RNGLVREAEEIFTEIEKSGCSP 441

Query: 436 DFTMYSCLLKGYCEEGNVENVMQIAHEM 463
               ++ L+ G C+ G ++    + H+M
Sbjct: 442 SVATFNALIDGLCKSGELKEARLLLHKM 469

Arabidopsis thaliana (taxid: 3702)

>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2 SV=2

 Score =  177 bits (449), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 204/413 (49%), Gaps = 28/413 (6%)

Query: 68  PYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLL----KNSN---K 120
           P   L FF+W SN       + H    +  + + L     +++A + L    + SN   K
Sbjct: 81  PADGLRFFDWVSNKG-----FSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVK 135

Query: 121 LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEF 180
           L D + + LI++YG+ G  + ++  F   KQ+     + ++NSLL +L++     +A + 
Sbjct: 136 LQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDL 195

Query: 181 FHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTV---KPNLLAYNTMINGFC 237
           F ++ +   V PD  T+ T+I G+CK  M++ A ++F  M +    P+++ YNT+I+G C
Sbjct: 196 FDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLC 255

Query: 238 KKGELEEAKKCMNEMMNRGC--RPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN 295
           + G+++ A   ++ M+ +     PN ++Y  ++ G C+   +DEA ++   M   G K N
Sbjct: 256 RAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPN 315

Query: 296 VSTHKSMLKGLCVVGKFDQAVGYLRNVMEA--NMNPDVKSYEVVINGFCKIGKSDEAISL 353
             T+ +++KGL    ++D+    L    +A     PD  ++ ++I   C  G  D A+ +
Sbjct: 316 AVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKV 375

Query: 354 LKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQM-------DCLPNFVSYNT 406
            +EM    L P   S++ + R L    E DRA  L  ++ +        +C P   +YN 
Sbjct: 376 FQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNP 435

Query: 407 IICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQI 459
           +   LC A G+ +  E +  ++++ G   D   Y  L+ G+C EG  +   ++
Sbjct: 436 MFEYLC-ANGKTKQAEKVFRQLMKRGVQ-DPPSYKTLITGHCREGKFKPAYEL 486

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1

 Score =  176 bits (445), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 202/382 (52%), Gaps = 25/382 (6%)

Query: 92  TPCYTAITDVLLSHSLISIAASL---LKNSNKLSDFFI-SKLIKAYGDRGNVKAAIFWFH 147
           T  Y+ + + L + S + +A  L   +K    ++D +  + ++ ++   G ++ A  WF+
Sbjct: 483 TSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFN 542

Query: 148 QAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKM 207
           + +++     + +Y +L+   ++   +  A E F  ++ E  +P ++ TY+ +I G+CK 
Sbjct: 543 EMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLP-NIVTYSALIDGHCKA 601

Query: 208 GMIENAKKVFDVM-------------------TVKPNLLAYNTMINGFCKKGELEEAKKC 248
           G +E A ++F+ M                   + +PN++ Y  +++GFCK   +EEA+K 
Sbjct: 602 GQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKL 661

Query: 249 MNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV 308
           ++ M   GC PN++ Y+A+I GLC  G++DEA+ +  +M  +GF   + T+ S++     
Sbjct: 662 LDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFK 721

Query: 309 VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFS 368
           V + D A   L  ++E +  P+V  Y  +I+G CK+GK+DEA  L++ M  +G +P V +
Sbjct: 722 VKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVT 781

Query: 369 FNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRM 428
           + A+       G+++  + LL++M      PN+V+Y  +I   C   G +    +L++ M
Sbjct: 782 YTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLI-DHCCKNGALDVAHNLLEEM 840

Query: 429 IRSGHNLDFTMYSCLLKGYCEE 450
            ++        Y  +++G+ +E
Sbjct: 841 KQTHWPTHTAGYRKVIEGFNKE 862

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1

 Score =  172 bits (436), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 177/342 (51%), Gaps = 4/342 (1%)

Query: 127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVK 186
           + +++ Y + G++  A+    Q  +        S N ++    +   ++ A  F  ++  
Sbjct: 228 TTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSN 287

Query: 187 ENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVK---PNLLAYNTMINGFCKKGELE 243
           ++   PD  T+ T++ G CK G +++A ++ DVM  +   P++  YN++I+G CK GE++
Sbjct: 288 QDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVK 347

Query: 244 EAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSML 303
           EA + +++M+ R C PN +TYN +I  LC   +V+EA  L   +   G   +V T  S++
Sbjct: 348 EAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLI 407

Query: 304 KGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLK 363
           +GLC+      A+     +      PD  +Y ++I+  C  GK DEA+++LK+M   G  
Sbjct: 408 QGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCA 467

Query: 364 PTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVED 423
            +V ++N +     +  +   A  +  +M       N V+YNT+I GLC ++ R++D   
Sbjct: 468 RSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSR-RVEDAAQ 526

Query: 424 LVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVT 465
           L+D+MI  G   D   Y+ LL  +C  G+++    I   M +
Sbjct: 527 LMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTS 568

May be involved in female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1

 Score =  167 bits (424), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 173/310 (55%), Gaps = 5/310 (1%)

Query: 161 YNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM 220
           Y +L+    +   I+ A++ F ++ K  +V  +  TYT +I G  K G+ +   ++++ M
Sbjct: 201 YTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANE-RTYTVLINGLFKNGVKKQGFEMYEKM 259

Query: 221 T---VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRV 277
               V PNL  YN ++N  CK G  ++A +  +EM  RG   N +TYN +I GLC   ++
Sbjct: 260 QEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKL 319

Query: 278 DEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVV 337
           +EA  ++ +M+ +G   N+ T+ +++ G C VGK  +A+   R++    ++P + +Y ++
Sbjct: 320 NEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNIL 379

Query: 338 INGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDC 397
           ++GFC+ G +  A  ++KEM  RG+KP+  ++  +      +  +++AI L   M ++  
Sbjct: 380 VSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGL 439

Query: 398 LPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVM 457
           +P+  +Y+ +I G C+ KG+M +   L   M+      +  +Y+ ++ GYC+EG+    +
Sbjct: 440 VPDVHTYSVLIHGFCI-KGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRAL 498

Query: 458 QIAHEMVTKK 467
           ++  EM  K+
Sbjct: 499 KLLKEMEEKE 508

Arabidopsis thaliana (taxid: 3702)

>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1

 Score =  167 bits (423), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 160/285 (56%), Gaps = 4/285 (1%)

Query: 129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKEN 188
           LI  Y   GN+       HQ ++      +++Y++L+  L + N +  A   F ++ K  
Sbjct: 281 LINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRG 340

Query: 189 VVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVK---PNLLAYNTMINGFCKKGELEEA 245
           ++P DV  +TT+I G+ + G I+  K+ +  M  K   P+++ YNT++NGFCK G+L  A
Sbjct: 341 LIPNDV-IFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAA 399

Query: 246 KKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKG 305
           +  ++ M+ RG RP+++TY  +I G C  G V+ A  +  +M  NG + +     +++ G
Sbjct: 400 RNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCG 459

Query: 306 LCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPT 365
           +C  G+   A   LR ++ A + PD  +Y ++++ FCK G +     LLKEM++ G  P+
Sbjct: 460 MCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPS 519

Query: 366 VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICG 410
           V ++N +   L + G++  A +LL  M  +  +P+ ++YNT++ G
Sbjct: 520 VVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEG 564

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1

 Score =  164 bits (416), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 138/534 (25%), Positives = 249/534 (46%), Gaps = 100/534 (18%)

Query: 1   MATPRRSLTNISQIPD--QSILVTSITSVIQRLNPQNPSPKNISSQPLDQFSLCLGSNIV 58
           M+ P R L+ +S+ P+  +S  + S+ S I        SP ++SS     FSL L     
Sbjct: 60  MSVPHRLLSILSK-PNWHKSPSLKSMVSAI--------SPSHVSSL----FSLDL----- 101

Query: 59  TKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIA------- 111
                   +P  AL F +W S    NP +Y H+   Y ++  +L+++  + +        
Sbjct: 102 --------DPKTALNFSHWISQ---NP-RYKHSVYSYASLLTLLINNGYVGVVFKIRLLM 149

Query: 112 -------------ASLLKNSNKLSDFFISK--LIKAYGDRGNVKAAIFWFHQAKQI---- 152
                          L +  NK   F +    +I  Y    N  A      + KQ+    
Sbjct: 150 IKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEM 209

Query: 153 -ENGAC--LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGM 209
            E+  C  +Y+YN ++    ++ +++ A ++  +IV E  + PD  TYT++I GYC+   
Sbjct: 210 LEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV-EAGLDPDFFTYTSLIMGYCQRKD 268

Query: 210 IENAKKVFDVMTVKP---NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNA 266
           +++A KVF+ M +K    N +AY  +I+G C    ++EA     +M +  C P   TY  
Sbjct: 269 LDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTV 328

Query: 267 MIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN 326
           +I  LC + R  EA  L+ +M   G K N+ T+  ++  LC   KF++A   L  ++E  
Sbjct: 329 LIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKG 388

Query: 327 MNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAI 386
           + P+V +Y  +ING+CK G  ++A+ +++ M +R L P   ++N + +   ++  + +A+
Sbjct: 389 LMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAM 447

Query: 387 LLLKQMPQMDCLPNFVSYNTIICGLCMA-------------------------------- 414
            +L +M +   LP+ V+YN++I G C +                                
Sbjct: 448 GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSL 507

Query: 415 --KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTK 466
               R+++  DL D + + G N +  MY+ L+ GYC+ G V+    +  +M++K
Sbjct: 508 CKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSK 561

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	526
343887304	567	PPR containing protein [Citrus unshiu]	0.887	0.823	0.928	0.0
147797621	912	hypothetical protein VITISV_002230 [Viti	0.901	0.519	0.563	1e-160
224088774	567	predicted protein [Populus trichocarpa]	0.884	0.820	0.537	1e-153
359475966	563	PREDICTED: pentatricopeptide repeat-cont	0.809	0.756	0.448	1e-107
255550123	461	pentatricopeptide repeat-containing prot	0.758	0.865	0.461	1e-107
356509834	472	PREDICTED: pentatricopeptide repeat-cont	0.777	0.866	0.436	1e-97
356519094	345	PREDICTED: LOW QUALITY PROTEIN: pentatri	0.621	0.947	0.381	3e-72
297605196	717	Os06g0152500 [Oryza sativa Japonica Grou	0.718	0.527	0.306	2e-52
218197600	694	hypothetical protein OsI_21710 [Oryza sa	0.741	0.561	0.299	2e-52
357118714	718	PREDICTED: LOW QUALITY PROTEIN: pentatri	0.705	0.516	0.311	3e-52

>gi|343887304|dbj|BAK61850.1| PPR containing protein [Citrus unshiu]

 Score =  956 bits (2471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/503 (92%), Positives = 467/503 (92%), Gaps = 36/503 (7%)

Query: 1   MATPRRSLTNISQIPDQSILVTSITSVIQRLNPQNPSPKNISSQPLDQFSLCLGSNIVTK 60
           MATPRRSLTNISQIPDQSILVTSITSVIQRLNPQNPSPKNISSQPLDQFSLCLGSNIVTK
Sbjct: 1   MATPRRSLTNISQIPDQSILVTSITSVIQRLNPQNPSPKNISSQPLDQFSLCLGSNIVTK 60

Query: 61  VIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNK 120
           VIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNK
Sbjct: 61  VIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNK 120

Query: 121 LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEF 180
           LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEF
Sbjct: 121 LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEF 180

Query: 181 FHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGF---- 236
           FHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGF    
Sbjct: 181 FHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKG 240

Query: 237 --------------------------------CKKGELEEAKKCMNEMMNRGCRPNELTY 264
                                           CKKGELEEAKKCMNEMMNRGCRPNELTY
Sbjct: 241 DMESARLVFDRMMSGEDCLPNHVTYTTLIDGYCKKGELEEAKKCMNEMMNRGCRPNELTY 300

Query: 265 NAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVME 324
           NAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVME
Sbjct: 301 NAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVME 360

Query: 325 ANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDR 384
           ANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDR
Sbjct: 361 ANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDR 420

Query: 385 AILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLL 444
           AILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLL
Sbjct: 421 AILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLL 480

Query: 445 KGYCEEGNVENVMQIAHEMVTKK 467
           KGYCEEGNVENVMQIAHEMVTKK
Sbjct: 481 KGYCEEGNVENVMQIAHEMVTKK 503

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/518 (56%), Positives = 370/518 (71%), Gaps = 44/518 (8%)

Query: 6   RSLTNISQIPDQSILV------TSITSVIQRLNPQNPSPKNISS-QPLDQFSLCLGSNIV 58
           R+L N    P  S +       +SITS +Q LNPQNP+P + +S  PL QF+  L   +V
Sbjct: 58  RTLANTHASPLASHIAQLLSTASSITSFLQTLNPQNPTPNSPTSISPLSQFAPFLNPXLV 117

Query: 59  TKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNS 118
            +VI  Q NPYHALFFFNWASNPNPNPN Y H+  CY AITD+L+SH L S A+SLL++ 
Sbjct: 118 IQVIKSQKNPYHALFFFNWASNPNPNPNNYSHSHLCYVAITDLLISHGLFSTASSLLQSH 177

Query: 119 NKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAE 178
           ++LSDF  +K +KAYGDRG+++ AI WFH+AK++E+G CL+SYN++LGV V+ N I LA 
Sbjct: 178 HRLSDFAAAKFVKAYGDRGDIRGAIHWFHRAKKMESGRCLFSYNAILGVFVKANRIMLAR 237

Query: 179 EFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCK 238
             F QIVKE VV PDVSTYTT+IRGYCKMGMIENAK VFD M  KPNL+ YNTMINGFCK
Sbjct: 238 AVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNVFDEMGCKPNLVTYNTMINGFCK 297

Query: 239 K------------------------------------GELEEAKKCMNEMMNRGCRPNEL 262
           K                                    GELEEA K M EM++R C PN L
Sbjct: 298 KGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCKRGELEEAMKYMEEMVSRNCEPNVL 357

Query: 263 TYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNV 322
           TYNA+IYGLC+NG VDEAK +M +MRLNG KDNV+TH S+LKGLCVVGK D A  +L+ +
Sbjct: 358 TYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEM 417

Query: 323 MEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGEL 382
           +   M  D K+Y VV+N +CKIGK+D+AISLLKEM++RG+ P+V SFNAVFRILVE+G+ 
Sbjct: 418 VGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKT 477

Query: 383 DRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSC 442
           D+A L+L+QM Q+ C PNF+SY+T+I GLC AKGRM +VE+ VD M R+GH+LD +MYS 
Sbjct: 478 DKAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNGHHLDASMYSW 537

Query: 443 LLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRV 480
           L+KGYCE+GN +  M++  EM+   G ++ L++FL  V
Sbjct: 538 LVKGYCEDGNADMAMRLFCEML-DMGYVINLESFLAFV 574

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088774|ref|XP_002308534.1| predicted protein [Populus trichocarpa] gi|222854510|gb|EEE92057.1| predicted protein [Populus trichocarpa]

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 270/502 (53%), Positives = 350/502 (69%), Gaps = 37/502 (7%)

Query: 2   ATPRRSLTNISQIPDQSILVTSITSVIQRLNPQNPSPKNISSQPLDQFSLCLGSNIVTKV 61
           A   R+LT   +  + + LVT+ITS ++ LNPQNP+PK+I+   L+QFS  L SN+V +V
Sbjct: 7   AATARTLTRHPRSSELASLVTAITSCLETLNPQNPNPKHINPTHLNQFSPHLDSNLVIEV 66

Query: 62  IYEQT-NPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNK 120
           I EQ  NPY ALFFFNWASN NPNPN Y H   CY AI D+LLSHSL  IA +LL+    
Sbjct: 67  IKEQQPNPYQALFFFNWASNLNPNPNNYSHNHRCYVAIIDLLLSHSLFPIAKNLLEKHGT 126

Query: 121 LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEF 180
            SD  +SKLI+AYG  G+ K+AIFWFH+ K+I+ G CL+S+N++LGVLV+VN I +A+ F
Sbjct: 127 FSDLLVSKLIRAYGYSGDTKSAIFWFHKVKEIQQGKCLFSWNAILGVLVKVNQINVAKSF 186

Query: 181 FHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLL------------- 227
           F QIV + VV PD STYTTMIRG+CK+GMI+NA+KVFD M  +PNL+             
Sbjct: 187 FDQIVNDAVVKPDASTYTTMIRGFCKVGMIDNARKVFDEMICEPNLITCNTLINGYCKKG 246

Query: 228 -----------------------AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTY 264
                                   Y+T+I+G+CKKGEL EA+K M+ M+ RGC PN  TY
Sbjct: 247 DMENARIFLCRMMESKDCLPDTVTYSTLIDGYCKKGELNEARKWMDGMLIRGCNPNLWTY 306

Query: 265 NAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVME 324
           NA+IYGLC+ G VDEA+ L+ KMRLNG K+NV+TH S+LKGL V GK ++A+GY   ++ 
Sbjct: 307 NAIIYGLCLRGNVDEARRLLTKMRLNGVKENVATHLSILKGLSVAGKSEEAIGYFSEMIR 366

Query: 325 ANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDR 384
             M  D K +EVVI  +CK+ K DEAISLLKEM+A+G+  +V SFNAV RILVE GELD+
Sbjct: 367 KGMKLDAKEHEVVITAYCKMRKPDEAISLLKEMQAKGISRSVGSFNAVLRILVEIGELDK 426

Query: 385 AILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLL 444
           A+LLLKQ+  M CLPN VSY+T+ICGLC + GRMQ+V  LVD M++ G  +D T+YSCL+
Sbjct: 427 AVLLLKQVKNMGCLPNLVSYSTVICGLCRSHGRMQEVAGLVDDMLQDGFEMDATLYSCLV 486

Query: 445 KGYCEEGNVENVMQIAHEMVTK 466
            G+CE GN E  M+  ++ + K
Sbjct: 487 GGFCEAGNEEMAMRAFYDSINK 508

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475966|ref|XP_002279628.2| PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Vitis vinifera]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/482 (44%), Positives = 299/482 (62%), Gaps = 56/482 (11%)

Query: 6   RSLTNISQIPDQSILV------TSITSVIQRLNPQNPSPKNISS-QPLDQFSLCLGSNIV 58
           R+L N    P  S +       +SITS +Q LNPQNP+P + +S  PL QF+  L  ++V
Sbjct: 58  RTLANTHASPLASHIAQLLSTASSITSFLQTLNPQNPTPNSPTSISPLSQFAPFLNPSLV 117

Query: 59  TKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNS 118
            +VI  Q NPYHALFFFNWASNPNPNPN Y H+  CY AITD+L+SH L S A+SLL++ 
Sbjct: 118 IQVIKSQKNPYHALFFFNWASNPNPNPNNYSHSHLCYVAITDLLISHGLFSTASSLLQSH 177

Query: 119 NKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAE 178
           ++LSDF  +K +KAYGDRG+++ AI WFH+AK++E+G CL+SYN++LGV V+ N I LA 
Sbjct: 178 HRLSDFAAAKFVKAYGDRGDIRGAIHWFHRAKKMESGRCLFSYNAILGVFVKANRIMLAR 237

Query: 179 EFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCK 238
             F QIVKE VV PDVSTYTT+IRGYCKMGMIENAK VFD M  KPNL            
Sbjct: 238 AVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNVFDEMGCKPNL------------ 285

Query: 239 KGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVST 298
            G ++EAK+ M  M   G + N  T+ +++ GLC+ G++D+A   + +M   G + +   
Sbjct: 286 -GNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKA 344

Query: 299 HKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMR 358
           +  ++   C +GK D A+  L+ +    +NP V S+  V     + GK+D+A  +L++M+
Sbjct: 345 YGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMK 404

Query: 359 ARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRM 418
             G                                   C PNF+SY+T+I GLC AKGRM
Sbjct: 405 QLG-----------------------------------CTPNFLSYSTVIDGLCKAKGRM 429

Query: 419 QDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLT 478
            +VE+ VD M R+GH+LD +MYS L+KGYCE+GN +  M++  EM+   G ++ L++FL 
Sbjct: 430 HEVEEFVDDMCRNGHHLDASMYSWLVKGYCEDGNADMAMRLFCEML-DMGYVINLESFLA 488

Query: 479 RV 480
            V
Sbjct: 489 FV 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550123|ref|XP_002516112.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223544598|gb|EEF46114.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/464 (46%), Positives = 285/464 (61%), Gaps = 65/464 (14%)

Query: 1   MATPRRSLTNISQIPDQSILVTSITSVIQRLNPQNPSPKNISSQPLDQFSLCLGSNIVTK 60
           MAT    LT+  Q P  + +VT+IT+ ++ LNPQN +P +I+  PL+QFS  L S +V +
Sbjct: 1   MATAANMLTHRLQTPYLTSVVTAITTCLRSLNPQNLNPSHINPAPLNQFSPYLNSQLVIE 60

Query: 61  VIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNK 120
           VI +Q+NPYHALFFFNWASN  PNPN Y H   CY AITD+LLSHSL ++A+SLL+N+NK
Sbjct: 61  VIRKQSNPYHALFFFNWASNLCPNPNNYFHNHHCYVAITDLLLSHSLFALASSLLQNANK 120

Query: 121 LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEF 180
           +SD  +SK I AYG+   VK AIFWF +AK I N              V  N   +A+  
Sbjct: 121 MSDLMVSKFIIAYGNLKEVKRAIFWFDKAKAIGN--------------VNANRFNIAQSI 166

Query: 181 FHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKG 240
           F ++V    V PDVSTY  MI+GY KM  +ENA K+FD M+ +PNL             G
Sbjct: 167 FDEMV---AVKPDVSTYAIMIKGYWKMRSVENASKLFDEMSCEPNL-------------G 210

Query: 241 ELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHK 300
            ++EA+K M EM   G + N  T+ +++ GLC  G+ DE                     
Sbjct: 211 NVDEARKLMTEMRLNGLKENLATHMSILKGLCYAGKSDE--------------------- 249

Query: 301 SMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR 360
                         AV Y + ++   M  DVK+Y VVIN +CK+ K +EAI+LLKEM+A+
Sbjct: 250 --------------AVNYFKEMIRKGMKCDVKAYAVVINEYCKMKKPNEAIALLKEMKAK 295

Query: 361 GLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQD 420
           G+ P+V SFNAV +IL++ GE D AI LLKQM  M C PNF+SYN +I GLC AKGRMQ+
Sbjct: 296 GINPSVSSFNAVIQILMKLGEPDAAIFLLKQMQGMGCRPNFISYNIVIGGLCGAKGRMQN 355

Query: 421 VEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMV 464
           V++L+  M+ SG  +D TMYS L+KGYCE+GN E   Q+ +E +
Sbjct: 356 VKELLHNMLCSGLAVDATMYSSLVKGYCEDGNEEMAKQVLYEAI 399

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509834|ref|XP_003523650.1| PREDICTED: pentatricopeptide repeat-containing protein At4g11690-like [Glycine max]

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 200/458 (43%), Positives = 278/458 (60%), Gaps = 49/458 (10%)

Query: 9   TNISQIPDQSILVTSITSVIQRLNPQNPSPKNISSQPLDQFSLCLGSNIVTKVIYEQTNP 68
           ++ + IP+ S LVT IT+++Q +NPQNP        PL +FS  L  N+V  VI  Q NP
Sbjct: 17  SSTAPIPNLS-LVTCITTILQNINPQNPD-----YSPLREFSSHLTPNLVIHVIKNQNNP 70

Query: 69  YHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISK 128
            HAL FFNWASNPNPNPN Y HT  CYTAITD+LLSHSL S A SLL++SN+LSD  + +
Sbjct: 71  QHALHFFNWASNPNPNPNNYSHTPLCYTAITDLLLSHSLFSTAFSLLRHSNRLSDNLVCR 130

Query: 129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKEN 188
            I A G RG+++ AI WFHQA     G C++S N++LGVLVR N + +A+  + Q++ E 
Sbjct: 131 FINALGHRGDIRGAIHWFHQANTFTRGRCVFSCNAILGVLVRANRVNIAKAIYDQVLAEA 190

Query: 189 VVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKC 248
           V+ PDV TYTTMIRG+CK+G +E+A+KVFD M  +PN++ YNT        GE++EA+K 
Sbjct: 191 VLEPDVYTYTTMIRGFCKVGKVESARKVFDEMRCEPNIVTYNT--------GEVDEARKM 242

Query: 249 MNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV 308
           M+ M   G + +  T  +++ G CI G+ DEA   + +M   G K +V  +  ++   C 
Sbjct: 243 MSRMRLNGLKDDVATNTSLLKGFCIVGKSDEAVKHLREMVSRGMKPDVKAYGVVVNEYCK 302

Query: 309 VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFS 368
           + K  +AV  LR ++   + P+V S+  V       GK DE + LLK+M           
Sbjct: 303 IRKPSEAVLLLREMVVRGVKPNVSSFNAVFRVLVDEGKIDEGLHLLKQM----------- 351

Query: 369 FNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRM 428
                                   P+M C PNF+SY T+ICGLC  KGRMQ VE+LV  M
Sbjct: 352 ------------------------PKMGCSPNFLSYCTVICGLCEVKGRMQQVEELVSNM 387

Query: 429 IRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTK 466
           +++GHNLD TMY+CLL GYCE+ + E   +  ++++ K
Sbjct: 388 LQNGHNLDATMYNCLLLGYCEDRDEEMAQKTVYDIMDK 425

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519094|ref|XP_003528209.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g09900-like [Glycine max]

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 162/425 (38%), Positives = 226/425 (53%), Gaps = 98/425 (23%)

Query: 31  LNPQNPSPKNISSQPLDQFSLCLGSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHH 90
           LNPQ+P        P  QFS     N+V  VI  Q   +HAL FFN ++           
Sbjct: 10  LNPQSPD-----YSPPKQFSSHHTPNLVINVIKNQNILHHALHFFNXSA----------- 53

Query: 91  TTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAK 150
                        S +L + AA+                            A F   Q++
Sbjct: 54  ------------CSSTLSATAAT--------------------------SGAPFTVPQSQ 75

Query: 151 QIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMI 210
            +  G C+YS N++LGVLVR N + +A+  + Q++ + ++ PDV T              
Sbjct: 76  YLHKGHCVYSCNAILGVLVRANCVNIAKAIYDQVLTKAILKPDVYT-------------- 121

Query: 211 ENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYG 270
                             Y TMI G CK G +E A K   E+    C PN +TYN     
Sbjct: 122 ------------------YTTMICGLCKVGMVESACKVFEEI---PCEPNMVTYNT---- 156

Query: 271 LCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPD 330
               G  DEA+ +M++MRLNG K++V+ + S+ KG C++G  D+ V +LR ++   M PD
Sbjct: 157 ----GEADEARKMMSRMRLNGLKEDVANNTSLSKGFCIMGNSDETVEHLREMVSRGMRPD 212

Query: 331 VKSYEVVI-NGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLL 389
           VK+Y VV+ N +CKI K  EA+ LL+EM  RG KP++ SFNAVFR+LV+ G+LD+ +LLL
Sbjct: 213 VKAYRVVVVNEYCKIRKPSEAVLLLREMVVRGFKPSMSSFNAVFRVLVDEGKLDKRVLLL 272

Query: 390 KQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCE 449
           KQMP+M C PNF+ Y T+ICGLC   GRMQ VE+L+  M+++ HNLD TMY+CLL GYCE
Sbjct: 273 KQMPKMGCSPNFLFYCTVICGLCKVNGRMQQVEELIPDMLQNRHNLDATMYNCLLAGYCE 332

Query: 450 EGNVE 454
           +G+ E
Sbjct: 333 DGDEE 337

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group] gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]

 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 211/385 (54%), Gaps = 7/385 (1%)

Query: 88  YHHTTPCYTAITDVLLSHSLIS---IAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIF 144
           Y  + P Y A+   L   SL S     +S+L++    + +  + L++A   RG ++ A+ 
Sbjct: 114 YAPSVPAYNAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVG 173

Query: 145 WFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY 204
                +         +YN+L+    R   +  AE     + +E    P++ T+ +M+ G 
Sbjct: 174 VVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGL 233

Query: 205 CKMGMIENAKKVFDVMT---VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE 261
           CK G +E A+KVFD M    + P++++YNT+++G+CK G L E+    +EM  RG  P+ 
Sbjct: 234 CKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDV 293

Query: 262 LTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRN 321
           +T+ ++I+  C  G +++A  L+A+MR  G + N  T  +++ G C  G  D A+  +  
Sbjct: 294 VTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEE 353

Query: 322 VMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGE 381
           + +  + P V  Y  +ING+CK+G+ D A  L++EM A+ +KP V +++ +     + G 
Sbjct: 354 MRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN 413

Query: 382 LDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYS 441
           LD A  L ++M +   LP+ ++Y+++I GLC  K R+ D  +L + M++ G   D   Y+
Sbjct: 414 LDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK-RLNDACELFENMLQLGVQPDEFTYT 472

Query: 442 CLLKGYCEEGNVENVMQIAHEMVTK 466
            L+ G+C+EGNVE  + +  EM+ K
Sbjct: 473 TLIDGHCKEGNVEKALSLHDEMIRK 497

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/407 (29%), Positives = 218/407 (53%), Gaps = 17/407 (4%)

Query: 76  NWASNPNPNPNK----------YHHTTPCYTAITDVLLSHSLIS---IAASLLKNSNKLS 122
           ++AS P P+             Y  + P Y A+   L   SL S     +S+L++    +
Sbjct: 92  SYASLPRPSLAAAALAFAASAGYAPSVPAYNAVLLALSDASLPSARRFLSSMLRHGVAPN 151

Query: 123 DFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFH 182
            +  + L++A   RG ++ A+      +         +YN+L+    R   +  AE    
Sbjct: 152 VYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVS 211

Query: 183 QIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMT---VKPNLLAYNTMINGFCKK 239
            + +E    P++ T+ +M+ G CK G +E A+KVFD M    + P++++YNT+++G+CK 
Sbjct: 212 LMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKV 271

Query: 240 GELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTH 299
           G L E+    +EM  RG  P+ +T+ ++I+  C  G +++A  L+A+MR  G + N  T 
Sbjct: 272 GCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTF 331

Query: 300 KSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA 359
            +++ G C  G  D A+  +  + +  + P V  Y  +ING+CK+G+ D A  L++EM A
Sbjct: 332 TALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEA 391

Query: 360 RGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQ 419
           + +KP V +++ +     + G LD A  L ++M +   LP+ ++Y+++I GLC  K R+ 
Sbjct: 392 KRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK-RLN 450

Query: 420 DVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTK 466
           D  +L + M++ G   D   Y+ L+ G+C+EGNVE  + +  EM+ K
Sbjct: 451 DACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRK 497

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g39710-like [Brachypodium distachyon]

 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 216/385 (56%), Gaps = 14/385 (3%)

Query: 95  YTAITDVLLSHSLIS---IAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQ 151
           Y A+   L   SL S   + AS+L++    + +  + L++A   RG  + A+        
Sbjct: 123 YNAVLLALSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVV--GDD 180

Query: 152 IENGAC---LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG 208
           +    C   + +YN+L+    R   +  AE     +++E  V P + T+ T++ G CK G
Sbjct: 181 MRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLV-GVMREGGVRPSLVTFNTVVNGLCKAG 239

Query: 209 MIENAKKVFDVMT---VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYN 265
            +E+A+K+FD M    + P+ ++YNT+++G+CK G L EA     EM  +G  P+ +T+ 
Sbjct: 240 RMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFT 299

Query: 266 AMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA 325
           ++I+ +C  G ++ A  L+ +MR  G + N  T  +++ G C  G  D A+  ++ + E 
Sbjct: 300 SLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMREC 359

Query: 326 NMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRA 385
            + P V  Y V+ING+CK+G+ DEA  L+ EM A+G+KP V +++ +     + G+ D A
Sbjct: 360 RIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSA 419

Query: 386 ILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLK 445
             L ++M +   +P+ ++Y+++I GLC  + R+ D  +L ++M++ G   D   Y+ L+ 
Sbjct: 420 FELNRKMLKKGVVPDAITYSSLIRGLCEER-RLGDACELFEKMLQLGLQPDEFTYTTLID 478

Query: 446 GYCEEGNVENVMQIAHEMVTKKGRL 470
           G+C+EGNV+  + +  EM+ KKG L
Sbjct: 479 GHCKEGNVQKALSLHDEMI-KKGVL 502

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	526
TAIR|locus:2024296	598	AT1G09900 "AT1G09900" [Arabido	0.604	0.531	0.322	8.5e-49
TAIR|locus:2164910	747	EMB2745 "EMBRYO DEFECTIVE 2745	0.868	0.611	0.273	3.5e-47
TAIR|locus:2206420	780	AT1G79540 [Arabidopsis thalian	0.674	0.455	0.278	2.3e-46
TAIR|locus:2139732	566	AT4G11690 [Arabidopsis thalian	0.663	0.616	0.268	5.2e-42
TAIR|locus:2119747	660	EMB1025 "embryo defective 1025	0.583	0.465	0.294	1.4e-41
TAIR|locus:2083976	754	MEE40 "maternal effect embryo	0.634	0.442	0.296	3.9e-41
TAIR|locus:2084978	602	AT3G04760 [Arabidopsis thalian	0.574	0.501	0.296	9.6e-41
TAIR|locus:2155730	915	AT5G65560 "AT5G65560" [Arabido	0.606	0.348	0.284	2.7e-40
TAIR|locus:2064707	536	AT2G06000 "AT2G06000" [Arabido	0.642	0.630	0.292	3.3e-40
TAIR|locus:2205609	710	AT1G02060 [Arabidopsis thalian	0.754	0.559	0.256	7.6e-40

TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 104/322 (32%), Positives = 181/322 (56%)

Query:   163 SLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTV 222
             +L+    R+   + A +   +I++ +   PDV TY  MI GYCK G I NA  V D M+V
Sbjct:   142 TLIRGFCRLGKTRKAAKIL-EILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSV 200

Query:   223 KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKM 282
              P+++ YNT++   C  G+L++A + ++ M+ R C P+ +TY  +I   C +  V  A  
Sbjct:   201 SPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMK 260

Query:   283 LMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC 342
             L+ +MR  G   +V T+  ++ G+C  G+ D+A+ +L ++  +   P+V ++ +++   C
Sbjct:   261 LLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMC 320

Query:   343 KIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFV 402
               G+  +A  LL +M  +G  P+V +FN +   L   G L RAI +L++MPQ  C PN +
Sbjct:   321 STGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSL 380

Query:   403 SYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHE 462
             SYN ++ G C  K +M    + ++RM+  G   D   Y+ +L   C++G VE+ ++I ++
Sbjct:   381 SYNPLLHGFCKEK-KMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ 439

Query:   463 MVTKKGRLLKLKNFLTRVVDAL 484
             + + KG    L  + T V+D L
Sbjct:   440 L-SSKGCSPVLITYNT-VIDGL 459

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 3.5e-47, P = 3.5e-47
 Identities = 130/476 (27%), Positives = 226/476 (47%)

Query:     5 RRSLTNISQIPDQSILVTSITSVIQRLNPQNPSPKNISSQPLDQFSLCLGSN----IVTK 60
             RRSL+  +  P  S+L     + ++R +P      + +  P    +L L S     ++ K
Sbjct:     9 RRSLSTFASSPSDSLLADKALTFLKR-HPYQLHHLSANFTPEAASNLLLKSQNDQALILK 67

Query:    61 VIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVXXXXXXXXXXXXXXKNSNK 120
              +    NP H  F             K+           DV              K+  +
Sbjct:    68 FL-NWANP-HQFFTLRCKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFKSLQE 125

Query:   121 LSDFFISK------LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVN-S 173
               D   S       ++K+Y     +  A+   H A+       + SYN++L   +R   +
Sbjct:   126 TYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRN 185

Query:   174 IKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVK---PNLLAYN 230
             I  AE  F +++ E+ V P+V TY  +IRG+C  G I+ A  +FD M  K   PN++ YN
Sbjct:   186 ISFAENVFKEML-ESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYN 244

Query:   231 TMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLN 290
             T+I+G+CK  ++++  K +  M  +G  PN ++YN +I GLC  GR+ E   ++ +M   
Sbjct:   245 TLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRR 304

Query:   291 GFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEA 350
             G+  +  T+ +++KG C  G F QA+     ++   + P V +Y  +I+  CK G  + A
Sbjct:   305 GYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRA 364

Query:   351 ISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICG 410
             +  L +MR RGL P   ++  +     + G ++ A  +L++M      P+ V+YN +I G
Sbjct:   365 MEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALING 424

Query:   411 LCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTK 466
              C+  G+M+D   +++ M   G + D   YS +L G+C   +V+  +++  EMV K
Sbjct:   425 HCVT-GKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEK 479

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2206420 AT1G79540 [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
 Identities = 101/363 (27%), Positives = 194/363 (53%)

Query:   129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSI-KLAEEFFHQIVKE 187
             LI AY   G  + A+  F + K+ +    +++YN +L V++R      LA   +++++K 
Sbjct:   133 LISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRVMMREEVFFMLAFAVYNEMLKC 192

Query:   188 NVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMT---VKPNLLAYNTMINGFCKKGELEE 244
             N   P++ T+  ++ G  K G   +A+K+FD MT   + PN + Y  +I+G C++G  ++
Sbjct:   193 NC-SPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADD 251

Query:   245 AKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLK 304
             A+K   EM   G  P+ + +NA++ G C  GR+ EA  L+     +GF   +  + S++ 
Sbjct:   252 ARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLID 311

Query:   305 GLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKP 364
             GL    ++ QA     N+++ N+ PD+  Y ++I G  K GK ++A+ LL  M ++G+ P
Sbjct:   312 GLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISP 371

Query:   365 TVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDL 424
               + +NAV + L   G L+    L  +M + +  P+  ++  +IC +C   G +++ E++
Sbjct:   372 DTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCR-NGLVREAEEI 430

Query:   425 VDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEM-VTKKGRL-LKLKNFLTRVVD 482
                + +SG +     ++ L+ G C+ G ++    + H+M V +   L L+L +   R  D
Sbjct:   431 FTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLSHSGNRSFD 490

Query:   483 ALL 485
              ++
Sbjct:   491 TMV 493

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2139732 AT4G11690 [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 96/358 (26%), Positives = 189/358 (52%)

Query:   117 NSNK----LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVN 172
             N NK    L  +    LIK   + G ++ +     +  +      +  Y +L+    +  
Sbjct:   153 NENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKG 212

Query:   173 SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMT---VKPNLLAY 229
              I+ A++ F ++ K  +V  +  TYT +I G  K G+ +   ++++ M    V PNL  Y
Sbjct:   213 EIEKAKDLFFEMGKLGLVANE-RTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTY 271

Query:   230 NTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRL 289
             N ++N  CK G  ++A +  +EM  RG   N +TYN +I GLC   +++EA  ++ +M+ 
Sbjct:   272 NCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKS 331

Query:   290 NGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDE 349
             +G   N+ T+ +++ G C VGK  +A+   R++    ++P + +Y ++++GFC+ G +  
Sbjct:   332 DGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSG 391

Query:   350 AISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIIC 409
             A  ++KEM  RG+KP+  ++  +      +  +++AI L   M ++  +P+  +Y+ +I 
Sbjct:   392 AAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIH 451

Query:   410 GLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKK 467
             G C+ KG+M +   L   M+      +  +Y+ ++ GYC+EG+    +++  EM  K+
Sbjct:   452 GFCI-KGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKE 508

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2119747 EMB1025 "embryo defective 1025" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
 Identities = 92/312 (29%), Positives = 165/312 (52%)

Query:   159 YSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFD 218
             Y+Y +L+  L +   I  A     ++  E   P  V  Y  +I G CK G +    K+ D
Sbjct:   223 YTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPV-IYNVLIDGLCKKGDLTRVTKLVD 281

Query:   219 VMTVK---PNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCING 275
              M +K   PN + YNT+I+G C KG+L++A   +  M++  C PN++TY  +I GL    
Sbjct:   282 NMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQR 341

Query:   276 RVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYE 335
             R  +A  L++ M   G+  N   +  ++ GL   GK ++A+   R + E    P++  Y 
Sbjct:   342 RATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYS 401

Query:   336 VVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQM 395
             V+++G C+ GK +EA  +L  M A G  P  ++++++ +   + G  + A+ + K+M + 
Sbjct:   402 VLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKT 461

Query:   396 DCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVEN 455
              C  N   Y+ +I GLC   GR+++   +  +M+  G   D   YS ++KG C  G+++ 
Sbjct:   462 GCSRNKFCYSVLIDGLC-GVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDA 520

Query:   456 VMQIAHEMVTKK 467
              +++ HEM+ ++
Sbjct:   521 ALKLYHEMLCQE 532

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 3.9e-41, P = 3.9e-41
 Identities = 103/347 (29%), Positives = 183/347 (52%)

Query:   129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLV----RVNSIKLAEEFFHQI 184
             +++ Y + G++  A+    Q   +E G C +S N  + V+V    +   ++ A  F  ++
Sbjct:   230 VMQGYIEEGDLDGALRIREQ--MVEFG-CSWS-NVSVNVIVHGFCKEGRVEDALNFIQEM 285

Query:   185 VKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVK---PNLLAYNTMINGFCKKGE 241
               ++   PD  T+ T++ G CK G +++A ++ DVM  +   P++  YN++I+G CK GE
Sbjct:   286 SNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGE 345

Query:   242 LEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKS 301
             ++EA + +++M+ R C PN +TYN +I  LC   +V+EA  L   +   G   +V T  S
Sbjct:   346 VKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNS 405

Query:   302 MLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARG 361
             +++GLC+      A+     +      PD  +Y ++I+  C  GK DEA+++LK+M   G
Sbjct:   406 LIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG 465

Query:   362 LKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDV 421
                +V ++N +     +  +   A  +  +M       N V+YNT+I GLC ++ R++D 
Sbjct:   466 CARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSR-RVEDA 524

Query:   422 EDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468
               L+D+MI  G   D   Y+ LL  +C  G+++    I   M T  G
Sbjct:   525 AQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAM-TSNG 570

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 91/307 (29%), Positives = 169/307 (55%)

Query:   160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDV 219
             +YN ++G L     + LA +  +Q++ +N   P V TYT +I      G ++ A K+ D 
Sbjct:   195 TYNIMIGSLCSRGKLDLALKVLNQLLSDNC-QPTVITYTILIEATMLEGGVDEALKLMDE 253

Query:   220 MT---VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGR 276
             M    +KP++  YNT+I G CK+G ++ A + +  +  +GC P+ ++YN ++  L   G+
Sbjct:   254 MLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGK 313

Query:   277 VDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEV 336
              +E + LM KM       NV T+  ++  LC  GK ++A+  L+ + E  + PD  SY+ 
Sbjct:   314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373

Query:   337 VINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMD 396
             +I  FC+ G+ D AI  L+ M + G  P + ++N V   L +NG+ D+A+ +  ++ ++ 
Sbjct:   374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 433

Query:   397 CLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENV 456
             C PN  SYNT+   L  +  +++ +  +++ M+ +G + D   Y+ ++   C EG V+  
Sbjct:   434 CSPNSSSYNTMFSALWSSGDKIRALHMILE-MMSNGIDPDEITYNSMISCLCREGMVDEA 492

Query:   457 MQIAHEM 463
              ++  +M
Sbjct:   493 FELLVDM 499

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.7e-40, P = 2.7e-40
 Identities = 93/327 (28%), Positives = 178/327 (54%)

Query:   161 YNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM 220
             YN+LL  L R   +   ++ + +++++ V P ++ TY  M+ GYCK+G +E A +    +
Sbjct:   186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCP-NIYTYNKMVNGYCKLGNVEEANQYVSKI 244

Query:   221 T---VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRV 277
                 + P+   Y ++I G+C++ +L+ A K  NEM  +GCR NE+ Y  +I+GLC+  R+
Sbjct:   245 VEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRI 304

Query:   278 DEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVV 337
             DEA  L  KM+ +     V T+  ++K LC   +  +A+  ++ + E  + P++ +Y V+
Sbjct:   305 DEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVL 364

Query:   338 INGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDC 397
             I+  C   K ++A  LL +M  +GL P V ++NA+     + G ++ A+ +++ M     
Sbjct:   365 IDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKL 424

Query:   398 LPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVM 457
              PN  +YN +I G C  K  +     ++++M+      D   Y+ L+ G C  GN ++  
Sbjct:   425 SPNTRTYNELIKGYC--KSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAY 482

Query:   458 QIAHEMVTKKGRLLKLKNFLTRVVDAL 484
             ++   ++  +G L+  +   T ++D+L
Sbjct:   483 RLL-SLMNDRG-LVPDQWTYTSMIDSL 507

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2064707 AT2G06000 "AT2G06000" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 103/352 (29%), Positives = 185/352 (52%)

Query:   118 SNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLA 177
             +N+L  F +S    ++ ++G +  A     Q+ ++E G C+   NSLL  LV+++ ++ A
Sbjct:   137 NNRLLGFLVS----SFAEKGKLHFATALLLQSFEVE-GCCMV-VNSLLNTLVKLDRVEDA 190

Query:   178 EEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMT---VKPNLLAYNTMIN 234
              + F + ++      D  T+  +IRG C +G  E A ++  VM+    +P+++ YNT+I 
Sbjct:   191 MKLFDEHLRFQSCN-DTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQ 249

Query:   235 GFCKKGELEEAKKCMNEMMNRG-CRPNELTYNAMIYGLCINGRVDEAKMLMAKM-RLNGF 292
             GFCK  EL +A +   ++ +   C P+ +TY +MI G C  G++ EA  L+  M RL  +
Sbjct:   250 GFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIY 309

Query:   293 KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAIS 352
               NV T   ++ G    G+   A      ++     PDV ++  +I+G+C++G+  +   
Sbjct:   310 PTNV-TFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFR 368

Query:   353 LLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLC 412
             L +EM ARG+ P  F+++ +   L     L +A  LL Q+   D +P    YN +I G C
Sbjct:   369 LWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFC 428

Query:   413 MAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMV 464
              A G++ +   +V+ M +     D   ++ L+ G+C +G +   + I H+MV
Sbjct:   429 KA-GKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMV 479

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2205609 AT1G02060 [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 7.6e-40, P = 7.6e-40
 Identities = 107/417 (25%), Positives = 200/417 (47%)

Query:    68 PYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVXXXXXXXXXXXXXXKNSN---KLSDF 124
             P   L FF+W SN   + +K          +                 + SN   KL D 
Sbjct:    81 PADGLRFFDWVSNKGFS-HKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDR 139

Query:   125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQI 184
             + + LI++YG+ G  + ++  F   KQ+     + ++NSLL +L++     +A + F ++
Sbjct:   140 YFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEM 199

Query:   185 VKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTV---KPNLLAYNTMINGFCKKGE 241
              +   V PD  T+ T+I G+CK  M++ A ++F  M +    P+++ YNT+I+G C+ G+
Sbjct:   200 RRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGK 259

Query:   242 LEEAKKCMNEMMNRGC--RPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTH 299
             ++ A   ++ M+ +     PN ++Y  ++ G C+   +DEA ++   M   G K N  T+
Sbjct:   260 VKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTY 319

Query:   300 KSMLKGLCVVGKFDQAVGYLRNVMEA--NMNPDVKSYEVVINGFCKIGKSDEAISLLKEM 357
              +++KGL    ++D+    L    +A     PD  ++ ++I   C  G  D A+ + +EM
Sbjct:   320 NTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEM 379

Query:   358 RARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMD-------CLPNFVSYNTIICG 410
                 L P   S++ + R L    E DRA  L  ++ + +       C P   +YN +   
Sbjct:   380 LNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEY 439

Query:   411 LCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKK 467
             LC A G+ +  E +  ++++ G   D   Y  L+ G+C EG  +   ++   M+ ++
Sbjct:   440 LC-ANGKTKQAEKVFRQLMKRGVQ-DPPSYKTLITGHCREGKFKPAYELLVLMLRRE 494

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	526
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-18
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-18
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-18
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-14
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	7e-14
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-13
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	9e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-11
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-09
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-08
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-08
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-08
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-08
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	5e-08
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	6e-08
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	5e-07
pfam01535	31	pfam01535, PPR, PPR repeat	5e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-05
pfam01535	31	pfam01535, PPR, PPR repeat	2e-05
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	2e-05
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-05
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-05
pfam01535	31	pfam01535, PPR, PPR repeat	5e-05
pfam01535	31	pfam01535, PPR, PPR repeat	7e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	3e-04
pfam01535	31	pfam01535, PPR, PPR repeat	0.004

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 88.0 bits (218), Expect = 3e-18
 Identities = 48/227 (21%), Positives = 103/227 (45%), Gaps = 4/227 (1%)

Query: 190 VPPDVSTYTTMIRGYCKMGMIENAKKVFDVM---TVKPNLLAYNTMINGFCKKGELEEAK 246
           + PD  T   +++     G ++ AK+V+ ++    +K     Y   +N   +KG+ + A 
Sbjct: 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634

Query: 247 KCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGL 306
              ++M  +G +P+E+ ++A++      G +D+A  ++   R  G K    ++ S++   
Sbjct: 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694

Query: 307 CVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV 366
                + +A+    ++    + P V +   +I   C+  +  +A+ +L EM+  GL P  
Sbjct: 695 SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754

Query: 367 FSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCM 413
            +++ +        + D  + LL Q  +    PN V    I  GLC+
Sbjct: 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCL 800

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 87.6 bits (217), Expect = 4e-18
 Identities = 94/439 (21%), Positives = 183/439 (41%), Gaps = 20/439 (4%)

Query: 37  SPKNISSQPLDQFSLCLGSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYT 96
                S+                ++  + +    +      +             +P Y 
Sbjct: 315 RKGVSSATNSLSLDKKNNGVKDAELPGQSSGQAASDVEEENSLAAYNGGVSGKRKSPEYI 374

Query: 97  AITDVLLSHSLISIAASLLKNSNK-----LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQ 151
              + LL    I     LL++  K     +   + +K  KA   +  VK A   F  AK 
Sbjct: 375 DAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEA---FRFAKL 431

Query: 152 IENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIE 211
           I N   L ++N L+ V      I  A     ++V+E  +  D   YTT+I    K G ++
Sbjct: 432 IRN-PTLSTFNMLMSVCASSQDIDGALRVL-RLVQEAGLKADCKLYTTLISTCAKSGKVD 489

Query: 212 NAKKVFDVMT---VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMI 268
              +VF  M    V+ N+  +  +I+G  + G++ +A      M ++  +P+ + +NA+I
Sbjct: 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 549

Query: 269 YGLCINGRVDEAKMLMAKMRLNGFK---DNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA 325
                +G VD A  ++A+M+        D++ T  +++K     G+ D+A    + + E 
Sbjct: 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHI-TVGALMKACANAGQVDRAKEVYQMIHEY 608

Query: 326 NMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRA 385
           N+    + Y + +N   + G  D A+S+  +M+ +G+KP    F+A+  +    G+LD+A
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668

Query: 386 ILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS-GHNLDFTMYSCLL 444
             +L+   +       VSY++++     AK   + +E   D  I+S       +  + L+
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED--IKSIKLRPTVSTMNALI 726

Query: 445 KGYCEEGNVENVMQIAHEM 463
              CE   +   +++  EM
Sbjct: 727 TALCEGNQLPKALEVLSEM 745

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 76.7 bits (190), Expect = 8e-18
 Identities = 27/49 (55%), Positives = 38/49 (77%)

Query: 224 PNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLC 272
           P+++ YNT+I+G+CKKG++EEA K  NEM  RG +PN  TY+ +I GLC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 82.6 bits (204), Expect = 2e-16
 Identities = 68/311 (21%), Positives = 127/311 (40%), Gaps = 17/311 (5%)

Query: 160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDV 219
           +Y++L+   + + SI+  +  +  +   +   PD      ++  + K GM+ +A+++FD 
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVE-SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183

Query: 220 MTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDE 279
           M  + NL ++ T+I G    G   EA     EM   G      T+  M+      G    
Sbjct: 184 MPER-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242

Query: 280 AKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVIN 339
            + L   +   G   +     +++      G  + A    R V +        ++  ++ 
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA----RCVFDGMPEKTTVAWNSMLA 298

Query: 340 GFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQ---MD 396
           G+   G S+EA+ L  EMR  G+    F+F+ + RI      L+ A    KQ        
Sbjct: 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA----KQAHAGLIRT 354

Query: 397 CLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENV 456
             P  +  NT +  L    GRM+D  ++ DRM R     +   ++ L+ GY   G     
Sbjct: 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKA 410

Query: 457 MQIAHEMVTKK 467
           +++   M+ + 
Sbjct: 411 VEMFERMIAEG 421

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 67.8 bits (167), Expect = 1e-14
 Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 192 PDVSTYTTMIRGYCKMGMIENAKKVFDVMT---VKPNLLAYNTMINGFCK 238
           PDV TY T+I GYCK G +E A K+F+ M    +KPN+  Y+ +I+G CK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 74.1 bits (182), Expect = 7e-14
 Identities = 49/236 (20%), Positives = 104/236 (44%), Gaps = 34/236 (14%)

Query: 159 YSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFD 218
           ++++ ++ +  R+  ++ A++  H  +     P D+   T ++  Y K G +E+A+ VFD
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQA-HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384

Query: 219 VMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVD 278
            M  K NL+++N +I G+   G   +A +    M+  G  PN +T+ A++     +G  +
Sbjct: 385 RMPRK-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443

Query: 279 EAKMLMAKM-RLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNV--------------- 322
           +   +   M   +  K     +  M++ L   G  D+A   +R                 
Sbjct: 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTA 503

Query: 323 --MEAN-------------MNPD-VKSYEVVINGFCKIGKSDEAISLLKEMRARGL 362
             +  N             M P+ + +Y V++N +   G+  EA  +++ ++ +GL
Sbjct: 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 64/257 (24%), Positives = 116/257 (45%), Gaps = 11/257 (4%)

Query: 129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKEN 188
           +I    D GN + A   F +  +  + A   ++  +L     + S +  ++    ++K  
Sbjct: 195 IIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254

Query: 189 VVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKC 248
           VV  D      +I  Y K G IE+A+ VFD M  K   +A+N+M+ G+   G  EEA   
Sbjct: 255 VVG-DTFVSCALIDMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGYALHGYSEEALCL 312

Query: 249 MNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV 308
             EM + G   ++ T++ MI        ++ AK   A +   GF  ++  + +++     
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372

Query: 309 VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFS 368
            G+ + A    RNV +     ++ S+  +I G+   G+  +A+ + + M A G+ P   +
Sbjct: 373 WGRMEDA----RNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT 428

Query: 369 FNAV-----FRILVENG 380
           F AV     +  L E G
Sbjct: 429 FLAVLSACRYSGLSEQG 445

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 70.6 bits (173), Expect = 9e-13
 Identities = 76/322 (23%), Positives = 125/322 (38%), Gaps = 38/322 (11%)

Query: 193 DVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEM 252
           DVS   ++I+ Y  +G    A+KVF  M  K + +++  MI+G+ K G  ++A +    M
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMISGYEKNGLPDKALETYALM 380

Query: 253 MNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKF 312
                 P+E+T  +++      G +D    L       G    V    ++++        
Sbjct: 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440

Query: 313 DQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAV 372
           D+A+    N+ E     DV S+  +I G     +  EA+   ++M    LKP   +  A 
Sbjct: 441 DKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAA 495

Query: 373 FRILVENGELD-----RAILLLKQMPQMDCLPN-------------------------FV 402
                  G L       A +L   +     LPN                          V
Sbjct: 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVV 555

Query: 403 SYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHE 462
           S+N ++ G  +A G+     +L +RM+ SG N D   +  LL      G V   ++  H 
Sbjct: 556 SWNILLTGY-VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614

Query: 463 MVTKKGRLLKLKNFLTRVVDAL 484
           M  K      LK++   VVD L
Sbjct: 615 MEEKYSITPNLKHYAC-VVDLL 635

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 58.2 bits (142), Expect = 3e-11
 Identities = 20/46 (43%), Positives = 33/46 (71%)

Query: 329 PDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFR 374
           PDV +Y  +I+G+CK GK +EA+ L  EM+ RG+KP V++++ +  
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 64.9 bits (158), Expect = 6e-11
 Identities = 54/256 (21%), Positives = 106/256 (41%), Gaps = 44/256 (17%)

Query: 193 DVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEM 252
           DV     +I  Y K G + +A+ VFD M  + + +++N MI+G+ + GE  E  +    M
Sbjct: 221 DVDVVNALITMYVKCGDVVSARLVFDRMPRR-DCISWNAMISGYFENGECLEGLELFFTM 279

Query: 253 MNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKF 312
                 P+ +T  ++I    + G     + +   +   GF  +VS   S+++    +G +
Sbjct: 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339

Query: 313 DQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKP---TVFSF 369
            +A   + + ME     D  S+  +I+G+ K G  D+A+     M    + P   T+ S 
Sbjct: 340 GEA-EKVFSRMETK---DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395

Query: 370 --------------------------------NAVFRILVENGELDRAILLLKQMPQMDC 397
                                           NA+  +  +   +D+A+ +   +P+   
Sbjct: 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--- 452

Query: 398 LPNFVSYNTIICGLCM 413
             + +S+ +II GL +
Sbjct: 453 -KDVISWTSIIAGLRL 467

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 56.3 bits (137), Expect = 1e-10
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 259 PNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC 307
           P+ +TYN +I G C  G+V+EA  L  +M+  G K NV T+  ++ GLC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 53.2 bits (129), Expect = 1e-09
 Identities = 14/49 (28%), Positives = 27/49 (55%)

Query: 364 PTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLC 412
           P V ++N +     + G+++ A+ L  +M +    PN  +Y+ +I GLC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 51.6 bits (125), Expect = 6e-09
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK 206
           +YN+L+    +   ++ A + F+++ K  +  P+V TY+ +I G CK
Sbjct: 5   TYNTLIDGYCKKGKVEEALKLFNEMKKRGI-KPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 50.9 bits (123), Expect = 9e-09
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 399 PNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYC 448
           P+ V+YNT+I G C  KG++++   L + M + G   +   YS L+ G C
Sbjct: 1   PDVVTYNTLIDGYC-KKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE 261
            YNT+I+G CK G +EEA +   EM  RG  P+ 
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 50.0 bits (121), Expect = 1e-08
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 255 RGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMR 288
           +G +P+ +TYN +I GLC  GRVDEA  L+ +M 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 48.9 bits (118), Expect = 3e-08
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 190 VPPDVSTYTTMIRGYCKMGMIENAKKVFDVM 220
           + PDV TY T+I G C+ G ++ A ++ D M
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 17/222 (7%)

Query: 110 IAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFH-QAKQIENGACLYSYNSLLGVL 168
           I A +L+       F  + L+  Y   G +  A   F+   K +       S+N LL   
Sbjct: 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVV------SWNILLTGY 564

Query: 169 VRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVK----P 224
           V      +A E F+++V+  V P +V T+ +++    + GM+    + F  M  K    P
Sbjct: 565 VAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623

Query: 225 NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLM 284
           NL  Y  +++   + G+L EA   +N+M      P+   + A++    I+  V+  + L 
Sbjct: 624 NLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGE-LA 679

Query: 285 AKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN 326
           A+       ++V  +  +       GK+D+ V  +R  M  N
Sbjct: 680 AQHIFELDPNSVGYYILLCNLYADAGKWDE-VARVRKTMREN 720

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 50/219 (22%), Positives = 83/219 (37%), Gaps = 49/219 (22%)

Query: 230 NTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLM---AK 286
           N+ +   C  G+LE+A K +  M       +E  Y A+   LC   R  E    +   A 
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRAL 113

Query: 287 MRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGK 346
                    V    +ML      G+    + +   V       D+ S+ V++ G+ K G 
Sbjct: 114 SSHPSL--GVRLGNAMLSMFVRFGE----LVHAWYVFGKMPERDLFSWNVLVGGYAKAGY 167

Query: 347 SDEAISLLKEMRARGLKPTVFSF-----------------------------------NA 371
            DEA+ L   M   G++P V++F                                   NA
Sbjct: 168 FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227

Query: 372 VFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICG 410
           +  + V+ G++  A L+  +MP+ DC    +S+N +I G
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISG 262

Length = 857

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 54.1 bits (128), Expect = 6e-08
 Identities = 43/260 (16%), Positives = 101/260 (38%), Gaps = 7/260 (2%)

Query: 138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTY 197
           ++  A+    +A        L    + L +L  +  +  A E   + ++           
Sbjct: 3   DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62

Query: 198 TTMIRGYCKMGMIENAKKVFD---VMTVKPNL-LAYNTMINGFCKKGELEEAKKCMNEMM 253
             +     K+G +E A ++ +    + + PNL  A   +       G+ EEA + + + +
Sbjct: 63  LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122

Query: 254 NRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKM-RLNGFKDN-VSTHKSMLKGLCVVGK 311
                P+       +  L   G  +EA  L  K   L+   +       ++   L  +G+
Sbjct: 123 ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182

Query: 312 FDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNA 371
           +++A+  L   ++ N + D ++   +   + K+GK +EA+   ++           +   
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DPDNAEALYN 241

Query: 372 VFRILVENGELDRAILLLKQ 391
           +  +L+E G  + A+  L++
Sbjct: 242 LALLLLELGRYEEALEALEK 261

Length = 291

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 52.5 bits (124), Expect = 2e-07
 Identities = 42/218 (19%), Positives = 87/218 (39%), Gaps = 3/218 (1%)

Query: 241 ELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEA-KMLMAKMRLNGFKDNVSTH 299
           +L  A   + E + +          A +  L + G + EA ++L   + L    D     
Sbjct: 3   DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62

Query: 300 KSMLKGLCVVGKFDQAVGYLRNVMEANMNP-DVKSYEVVINGFCKIGKSDEAISLLKEMR 358
             +   L  +G+ ++A+  L   +E  + P   ++   +      +GK +EA+ LL++  
Sbjct: 63  LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122

Query: 359 ARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMD-CLPNFVSYNTIICGLCMAKGR 417
           A    P +         L E G+ + A+ L ++  ++D  L         +  L  A GR
Sbjct: 123 ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182

Query: 418 MQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVEN 455
            ++  +L+++ ++   + D      L   Y + G  E 
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220

Length = 291

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 45.8 bits (110), Expect = 5e-07
 Identities = 13/31 (41%), Positives = 25/31 (80%)

Query: 222 VKPNLLAYNTMINGFCKKGELEEAKKCMNEM 252
           +KP+++ YNT+I+G C+ G ++EA + ++EM
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 45.5 bits (109), Expect = 5e-07
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGC 257
            YN++I+G+CK G+LEEA +   EM  +G 
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 43.5 bits (104), Expect = 3e-06
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 329 PDVKSYEVVINGFCKIGKSDEAISLLKEMR 358
           PDV +Y  +I+G C+ G+ DEA+ LL EM 
Sbjct: 5   PDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 42.4 bits (101), Expect = 6e-06
 Identities = 16/34 (47%), Positives = 25/34 (73%)

Query: 333 SYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV 366
           +Y  +I+G CK G+ +EA+ L KEM+ RG++P V
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 263 TYNAMIYGLCINGRVDEAKMLMAKMRLNGFK 293
           TYN +I GLC  GRV+EA  L  +M+  G +
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIE 32

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 395 MDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRM 428
               P+ V+YNT+I GLC A GR+ +  +L+D M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRA-GRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 195 STYTTMIRGYCKMGMIENAKKVFDVM 220
            TY ++I GYCK G +E A ++F  M
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEM 26

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 331 VKSYEVVINGFCKIGKSDEAISLLKEMRARGLKP 364
           +++Y  ++    K G  D A+++L+EM+A GLKP
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 27/142 (19%), Positives = 63/142 (44%), Gaps = 7/142 (4%)

Query: 204 YCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELT 263
           Y + G +  A   F+    + +++++N ++ G+   G+   A +  N M+  G  P+E+T
Sbjct: 534 YVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591

Query: 264 YNAMIYGLCINGRVDEAKMLMAKMRLN-GFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNV 322
           + +++     +G V +       M        N+  +  ++  L   GK  +A  ++   
Sbjct: 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN-- 649

Query: 323 MEANMNPDVKSYEVVINGFCKI 344
            +  + PD   +  ++N  C+I
Sbjct: 650 -KMPITPDPAVWGALLNA-CRI 669

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 68/301 (22%), Positives = 122/301 (40%), Gaps = 23/301 (7%)

Query: 175 KLAEEFFH-QIVKENVVPPDVSTYTTMIRGYCKMG-MIENAKKVFDVMTVKPNLLAY--- 229
           +L +     + ++E  VP D   Y  + R  C+    +E   +V          L     
Sbjct: 66  QLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124

Query: 230 NTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRL 289
           N M++ F + GEL  A     +M  R    +  ++N ++ G    G  DEA  L  +M  
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180

Query: 290 NGFKDNVSTHKSMLKGLCVVGKFDQAVG--YLRNVMEANMNPDVKSYEVVINGFCKIGKS 347
            G + +V T   +L+  C  G  D A G     +V+      DV     +I  + K G  
Sbjct: 181 AGVRPDVYTFPCVLRT-CG-GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238

Query: 348 DEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTI 407
             A  +   M  R       S+NA+     ENGE    + L   M ++   P+ ++  ++
Sbjct: 239 VSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294

Query: 408 I--CGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVT 465
           I  C L   +   +++   V   +++G  +D ++ + L++ Y   G+     ++   M T
Sbjct: 295 ISACELLGDERLGREMHGYV---VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351

Query: 466 K 466
           K
Sbjct: 352 K 352

Length = 857

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 14/30 (46%), Positives = 23/30 (76%)

Query: 333 SYEVVINGFCKIGKSDEAISLLKEMRARGL 362
           +Y  +I+G+CK GK +EA+ L KEM+ +G+
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 39.4 bits (93), Expect = 7e-05
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 263 TYNAMIYGLCINGRVDEAKMLMAKMRLNGF 292
           TYN++I G C  G+++EA  L  +M+  G 
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 402 VSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLD 436
           V+YNT+I GLC A GR+++  +L   M   G   D
Sbjct: 1   VTYNTLIDGLCKA-GRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 196 TYTTMIRGYCKMGMIENAKKVFDVM 220
           TY T+I G CK G +E A ++F  M
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEM 26

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 229 YNTMINGFCKKGELEEAKKCMNEMMNRGCRP 259
           YN ++    K G+ + A   + EM   G +P
Sbjct: 4   YNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 34.7 bits (81), Expect = 0.004
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 402 VSYNTIICGLCMAKGRMQDVEDLVDRMIRSG 432
           V+YN++I G C A G++++  +L   M   G
Sbjct: 1   VTYNSLISGYCKA-GKLEEALELFKEMKEKG 30

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	526
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.97
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.97
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.96
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.92
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.92
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.91
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.9
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.9
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.9
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.9
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.89
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.87
PRK14574	822	hmsH outer membrane protein; Provisional	99.86
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.85
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.83
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.82
PRK14574	822	hmsH outer membrane protein; Provisional	99.82
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.75
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.72
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.7
KOG2076	895	consensus RNA polymerase III transcription factor	99.69
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.68
KOG2003	840	consensus TPR repeat-containing protein [General f	99.68
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.67
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.67
KOG2003	840	consensus TPR repeat-containing protein [General f	99.66
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.66
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.66
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.66
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.65
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.63
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.63
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.62
KOG2076	895	consensus RNA polymerase III transcription factor	99.62
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.61
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.61
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.6
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.6
KOG1126	638	consensus DNA-binding cell division cycle control	99.58
KOG1126	638	consensus DNA-binding cell division cycle control	99.56
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.56
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.53
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.49
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.45
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.44
PRK12370	553	invasion protein regulator; Provisional	99.44
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.43
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.43
PRK12370	553	invasion protein regulator; Provisional	99.41
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.4
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.38
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.36
KOG1129	478	consensus TPR repeat-containing protein [General f	99.36
KOG1129	478	consensus TPR repeat-containing protein [General f	99.34
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.33
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.32
PF13041	50	PPR_2: PPR repeat family	99.32
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.29
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.29
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.28
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.27
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.27
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.26
PF13041	50	PPR_2: PPR repeat family	99.26
PRK11189	296	lipoprotein NlpI; Provisional	99.25
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.23
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.22
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.19
PRK11189	296	lipoprotein NlpI; Provisional	99.18
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.18
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.18
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.17
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.16
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.15
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.11
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.1
PRK04841	903	transcriptional regulator MalT; Provisional	99.09
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.08
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.07
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.07
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.05
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.05
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.05
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.05
PRK04841	903	transcriptional regulator MalT; Provisional	98.98
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.97
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.96
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.95
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.95
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.92
PLN02789	320	farnesyltranstransferase	98.86
PLN02789	320	farnesyltranstransferase	98.86
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.83
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.79
KOG1125	579	consensus TPR repeat-containing protein [General f	98.78
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.78
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.77
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.76
KOG1125	579	consensus TPR repeat-containing protein [General f	98.75
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.75
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.75
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.74
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.72
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.68
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.65
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.64
PF12854	34	PPR_1: PPR repeat	98.63
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.63
PF12854	34	PPR_1: PPR repeat	98.63
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.62
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.62
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.61
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.6
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.6
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.59
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.59
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.59
PRK15359	144	type III secretion system chaperone protein SscB;	98.57
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.56
PRK15359	144	type III secretion system chaperone protein SscB;	98.56
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.55
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.52
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.49
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.45
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.42
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.42
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.36
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.29
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.29
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.29
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.29
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.28
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.15
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.13
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.07
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.06
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.01
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.0
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.92
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.91
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.9
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.9
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.85
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.81
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.79
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.77
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.76
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.76
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.75
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.75
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.74
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.72
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.71
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.71
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.71
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.67
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.67
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.66
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.65
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.65
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.64
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.62
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.62
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.6
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.6
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.56
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.56
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.55
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.55
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.52
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.52
KOG0553	304	consensus TPR repeat-containing protein [General f	97.52
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.51
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.5
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.47
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.44
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.42
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.41
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.41
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.4
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.38
KOG0553	304	consensus TPR repeat-containing protein [General f	97.38
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.36
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.34
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.32
PF12688	120	TPR_5: Tetratrico peptide repeat	97.3
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.3
PF12688	120	TPR_5: Tetratrico peptide repeat	97.28
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.26
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.23
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.16
PF13371	73	TPR_9: Tetratricopeptide repeat	97.16
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.13
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.13
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.09
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.09
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.08
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.08
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.96
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.95
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.93
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.89
PRK10803	263	tol-pal system protein YbgF; Provisional	96.88
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.86
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.85
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.84
PRK10803	263	tol-pal system protein YbgF; Provisional	96.83
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.77
KOG1585	308	consensus Protein required for fusion of vesicles	96.76
PF13371	73	TPR_9: Tetratricopeptide repeat	96.69
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.68
PRK15331	165	chaperone protein SicA; Provisional	96.67
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.59
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.51
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.48
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.42
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.33
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.22
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.15
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.14
PF13428	44	TPR_14: Tetratricopeptide repeat	96.13
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.13
PRK15331	165	chaperone protein SicA; Provisional	96.1
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.1
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.07
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.98
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.95
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.91
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.89
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.85
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.8
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.76
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.68
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.68
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.65
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.59
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.48
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.36
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.32
KOG3941	406	consensus Intermediate in Toll signal transduction	95.25
PRK11906	458	transcriptional regulator; Provisional	95.23
PF13512	142	TPR_18: Tetratricopeptide repeat	95.16
KOG1585	308	consensus Protein required for fusion of vesicles	95.14
PF13428	44	TPR_14: Tetratricopeptide repeat	95.09
PF13512	142	TPR_18: Tetratricopeptide repeat	95.05
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.77
PRK11906	458	transcriptional regulator; Provisional	94.76
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	94.7
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.67
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.65
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.55
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.55
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.51
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	94.5
KOG4555	175	consensus TPR repeat-containing protein [Function	94.41
PF13431	34	TPR_17: Tetratricopeptide repeat	94.24
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.23
KOG3941	406	consensus Intermediate in Toll signal transduction	94.21
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.17
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.16
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.05
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.04
KOG4555	175	consensus TPR repeat-containing protein [Function	93.88
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.77
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	93.72
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.64
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.27
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	93.25
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.21
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	93.03
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.02
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.01
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.9
KOG1258	577	consensus mRNA processing protein [RNA processing	92.82
PF13431	34	TPR_17: Tetratricopeptide repeat	92.78
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	92.69
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	92.68
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.66
COG1747	711	Uncharacterized N-terminal domain of the transcrip	92.01
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.58
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	91.55
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.41
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	90.83
KOG1258	577	consensus mRNA processing protein [RNA processing	90.52
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	90.41
KOG4234	271	consensus TPR repeat-containing protein [General f	90.23
KOG4570	418	consensus Uncharacterized conserved protein [Funct	90.09
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	90.08
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	89.59
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.52
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	89.43
KOG2610	491	consensus Uncharacterized conserved protein [Funct	89.27
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.2
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	88.89
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	88.8
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	88.55
KOG4570	418	consensus Uncharacterized conserved protein [Funct	88.52
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	88.49
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	88.28
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	88.27
PRK09687	280	putative lyase; Provisional	88.15
COG1747	711	Uncharacterized N-terminal domain of the transcrip	87.96
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	87.81
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	87.79
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	87.7
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	87.26
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	87.18
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	87.08
PRK12798	421	chemotaxis protein; Reviewed	86.99
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	86.98
KOG4648	536	consensus Uncharacterized conserved protein, conta	86.77
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	86.29
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.19
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	86.14
KOG4234	271	consensus TPR repeat-containing protein [General f	86.03
KOG4648	536	consensus Uncharacterized conserved protein, conta	85.95
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	85.81
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	85.4
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	84.68
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	84.43
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	84.42
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	84.14
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	84.08
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	83.74
COG5159	421	RPN6 26S proteasome regulatory complex component [	83.5
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	82.84
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	82.32
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	82.12
COG3947	361	Response regulator containing CheY-like receiver a	82.12
KOG1586	288	consensus Protein required for fusion of vesicles	81.52
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	81.29
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	80.57
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	80.34
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	80.21

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.5e-61  Score=506.71  Aligned_cols=459  Identities=15%  Similarity=0.219  Sum_probs=418.8

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 043068           56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGD  135 (526)
Q Consensus        56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~  135 (526)
                      ..+...+.+.|++++|+++|+++...+.    ...+...+..++..+.+.|.+++|..+++.+..++..+|+.++.+|++
T Consensus       374 ~~~y~~l~r~G~l~eAl~Lfd~M~~~gv----v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k  449 (1060)
T PLN03218        374 IDAYNRLLRDGRIKDCIDLLEDMEKRGL----LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCAS  449 (1060)
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHhCCC----CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            3445556668999999999999986542    334455677889999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHH
Q 043068          136 RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKK  215 (526)
Q Consensus       136 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  215 (526)
                      .|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.| +.||..+|+.+|.+|++.|++++|.+
T Consensus       450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k~G~~eeAl~  528 (1060)
T PLN03218        450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCARAGQVAKAFG  528 (1060)
T ss_pred             CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988 78999999999999999999999999


Q ss_pred             HHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068          216 VFDVM---TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMN--RGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLN  290 (526)
Q Consensus       216 ~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  290 (526)
                      +|++|   ++.||..+|+.+|.+|++.|++++|.++|++|..  .|+.||..+|+.++.+|++.|++++|.++|++|.+.
T Consensus       529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~  608 (1060)
T PLN03218        529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY  608 (1060)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            99999   7899999999999999999999999999999986  679999999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 043068          291 GFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFN  370 (526)
Q Consensus       291 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~  370 (526)
                      |+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+
T Consensus       609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn  688 (1060)
T PLN03218        609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS  688 (1060)
T ss_pred             CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043068          371 AVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEE  450 (526)
Q Consensus       371 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  450 (526)
                      .+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+||+. |++++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus       689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~-G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~  767 (1060)
T PLN03218        689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG-NQLPKALEVLSEMKRLGLCPNTITYSILLVASERK  767 (1060)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999987 99999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHHHHHHHHhcCc------c-----chhHHHHHHHHHHHHHHHhcCCcc
Q 043068          451 GNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGS------W-----ISRFVFVHQVVVIMERTVEDGKRS  519 (526)
Q Consensus       451 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~-----~~~~~~~~~~~~~~~~~~~~g~~~  519 (526)
                      |++++|.+++++|.+.|. .|+...+.+ +.+.+...+...+..      |     -....+..+++.+.+++.+.|..+
T Consensus       768 G~le~A~~l~~~M~k~Gi-~pd~~tyns-LIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P  845 (1060)
T PLN03218        768 DDADVGLDLLSQAKEDGI-KPNLVMCRC-ITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP  845 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCC-CCCHHHHHH-HHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence            999999999999999998 677666644 344443222211111      0     112245677899999999999988


Q ss_pred             cce
Q 043068          520 ECL  522 (526)
Q Consensus       520 ~~~  522 (526)
                      |..
T Consensus       846 d~~  848 (1060)
T PLN03218        846 TME  848 (1060)
T ss_pred             CHH
Confidence            854

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.5e-58  Score=485.72  Aligned_cols=452  Identities=17%  Similarity=0.253  Sum_probs=405.4

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC----CCCHHHHHHHHH
Q 043068           56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN----KLSDFFISKLIK  131 (526)
Q Consensus        56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~  131 (526)
                      ..+...+.+.|..+.|+.+|+.+..         ++..+|+.++.++++.|+++.|..+++.+.    .++..+|+.||.
T Consensus       410 ~~li~~~~~~g~~~eAl~lf~~M~~---------pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~  480 (1060)
T PLN03218        410 AKFFKACKKQRAVKEAFRFAKLIRN---------PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIS  480 (1060)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHcCC---------CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            3456667788999999999998753         345679999999999999999999998653    678899999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChh
Q 043068          132 AYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIE  211 (526)
Q Consensus       132 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  211 (526)
                      +|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.| +.||..+|+.++.+|++.|+++
T Consensus       481 ~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G-v~PD~vTYnsLI~a~~k~G~~d  559 (1060)
T PLN03218        481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN-VKPDRVVFNALISACGQSGAVD  559 (1060)
T ss_pred             HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHH
Confidence            999999999999999999999999999999999999999999999999999999988 8999999999999999999999


Q ss_pred             hHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068          212 NAKKVFDVM-----TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAK  286 (526)
Q Consensus       212 ~A~~~~~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  286 (526)
                      +|.++|++|     ++.||..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++
T Consensus       560 eA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~e  639 (1060)
T PLN03218        560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD  639 (1060)
T ss_pred             HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            999999998     468999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 043068          287 MRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV  366 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~  366 (526)
                      |.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus       640 M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv  719 (1060)
T PLN03218        640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV  719 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043068          367 FSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKG  446 (526)
Q Consensus       367 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  446 (526)
                      .+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++. |++++|.+++++|.+.|+.||..+|++|+..
T Consensus       720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~-G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl  798 (1060)
T PLN03218        720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK-DDADVGLDLLSQAKEDGIKPNLVMCRCITGL  798 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998886 9999999999999999999999999999876


Q ss_pred             HHh----C-------------------CCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHHHH----------H---HHH
Q 043068          447 YCE----E-------------------GNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLL----------M---WIV  490 (526)
Q Consensus       447 ~~~----~-------------------g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~----------~---~~~  490 (526)
                      |.+    .                   +..++|..+|++|++.|. .|+..+|...+  +++.          +   ...
T Consensus       799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi-~Pd~~T~~~vL--~cl~~~~~~~~~~~m~~~m~~  875 (1060)
T PLN03218        799 CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT-LPTMEVLSQVL--GCLQLPHDATLRNRLIENLGI  875 (1060)
T ss_pred             HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC-CCCHHHHHHHH--HHhcccccHHHHHHHHHHhcc
Confidence            432    1                   124679999999999998 78877775543  2220          0   000


Q ss_pred             hc--------CccchhH-HHHHHHHHHHHHHHhcCCcccc
Q 043068          491 TG--------GSWISRF-VFVHQVVVIMERTVEDGKRSEC  521 (526)
Q Consensus       491 ~g--------~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~  521 (526)
                      .+        .+.++.. ....+++.+.+++...|..++.
T Consensus       876 ~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~  915 (1060)
T PLN03218        876 SADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSV  915 (1060)
T ss_pred             CCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCc
Confidence            01        1111111 1235788888888888877764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.5e-58  Score=483.17  Aligned_cols=409  Identities=19%  Similarity=0.239  Sum_probs=359.4

Q ss_pred             ChHHHHHHHHhcCChhHHHHHHHHhcCCCCC-CC------------------------------CCcCChhhHHHHHHHH
Q 043068           54 GSNIVTKVIYEQTNPYHALFFFNWASNPNPN-PN------------------------------KYHHTTPCYTAITDVL  102 (526)
Q Consensus        54 ~~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~-~~------------------------------~~~~~~~~~~~l~~~~  102 (526)
                      +-+.++..+.+.|++++|+.+|+|+....+. |+                              ++.++..+|+.+++.|
T Consensus        89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y  168 (697)
T PLN03081         89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH  168 (697)
T ss_pred             eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            4466777888899999999999999754321 11                              1223445667777777


Q ss_pred             HhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 043068          103 LSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFH  182 (526)
Q Consensus       103 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  182 (526)
                      ++.|+++.|.++|+++..++..+|+.++.+|++.|++++|+++|++|.+.|..|+..+|+.++.++++.|..+.+.+++.
T Consensus       169 ~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~  248 (697)
T PLN03081        169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC  248 (697)
T ss_pred             hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043068          183 QIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNEL  262 (526)
Q Consensus       183 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  262 (526)
                      .+.+.| +.+|..+|+.|+.+|++.|++++|.++|++|. .+|..+||+++.+|++.|++++|+++|++|.+.|+.||..
T Consensus       249 ~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~  326 (697)
T PLN03081        249 CVLKTG-VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF  326 (697)
T ss_pred             HHHHhC-CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence            777776 67888899999999999999999999999997 6799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043068          263 TYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC  342 (526)
Q Consensus       263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~  342 (526)
                      ||+.++.+|++.|++++|.++++.|.+.|+.||..++++++++|++.|++++|.++|++|.+    ||..+||.||.+|+
T Consensus       327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~  402 (697)
T PLN03081        327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYG  402 (697)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999964    68999999999999


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHccc-CCCCcCHHHHHHHHHHHHhcCCCHHHH
Q 043068          343 KIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQ-MDCLPNFVSYNTIICGLCMAKGRMQDV  421 (526)
Q Consensus       343 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~~g~~~~a  421 (526)
                      +.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++.++++. |++++|
T Consensus       403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~-G~~~eA  481 (697)
T PLN03081        403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE-GLLDEA  481 (697)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc-CCHHHH
Confidence            9999999999999999999999999999999999999999999999999986 69999999999999999997 999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccc
Q 043068          422 EDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLK  472 (526)
Q Consensus       422 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~  472 (526)
                      .+++++|   ++.|+..+|++|+.+|..+|+++.|..+++++.+.++..+.
T Consensus       482 ~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~  529 (697)
T PLN03081        482 YAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN  529 (697)
T ss_pred             HHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc
Confidence            9999876   68899999999999999999999999999999888775443

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.7e-56  Score=478.57  Aligned_cols=463  Identities=18%  Similarity=0.270  Sum_probs=369.0

Q ss_pred             CChHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCc------------------------------CChhhHHHHHHHH
Q 043068           53 LGSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYH------------------------------HTTPCYTAITDVL  102 (526)
Q Consensus        53 ~~~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~  102 (526)
                      .+.+.++..+.+.|++++|+.+|+.+...+..|+.+.                              .+..+|+.+++.|
T Consensus       153 ~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y  232 (857)
T PLN03077        153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY  232 (857)
T ss_pred             eEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHH
Confidence            4558888999999999999999999976555454332                              3455789999999


Q ss_pred             HhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 043068          103 LSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFH  182 (526)
Q Consensus       103 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  182 (526)
                      ++.|+++.|..+|+++..++..+|+.+|.+|++.|++++|+++|++|...|+.||..+|+.++.+|++.|+++.|.+++.
T Consensus       233 ~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~  312 (857)
T PLN03077        233 VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG  312 (857)
T ss_pred             hcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043068          183 QIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNEL  262 (526)
Q Consensus       183 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  262 (526)
                      .+.+.| +.||..+|+.|+.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|+++|++|.+.|+.||..
T Consensus       313 ~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~  390 (857)
T PLN03077        313 YVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI  390 (857)
T ss_pred             HHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce
Confidence            999998 89999999999999999999999999999997 6899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------
Q 043068          263 TYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN----------------  326 (526)
Q Consensus       263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------------  326 (526)
                      ||+.++.+|++.|++++|.++++.|.+.|+.|+..++++++.+|++.|++++|.++|++|.+.+                
T Consensus       391 t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~  470 (857)
T PLN03077        391 TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNR  470 (857)
T ss_pred             eHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCC
Confidence            9999999999999999999999999999999999999999999988888888888887764321                


Q ss_pred             --------------C-----------------------------------------------------------------
Q 043068          327 --------------M-----------------------------------------------------------------  327 (526)
Q Consensus       327 --------------~-----------------------------------------------------------------  327 (526)
                                    +                                                                 
T Consensus       471 ~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~  550 (857)
T PLN03077        471 CFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH  550 (857)
T ss_pred             HHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence                          1                                                                 


Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcc-cCCCCcCHHHHHH
Q 043068          328 NPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMP-QMDCLPNFVSYNT  406 (526)
Q Consensus       328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~  406 (526)
                      .+|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|++
T Consensus       551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~  630 (857)
T PLN03077        551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC  630 (857)
T ss_pred             CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence            234455666666666667777777777777766777777777777777777777777777777776 4566677777777


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHH----
Q 043068          407 IICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVD----  482 (526)
Q Consensus       407 ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~----  482 (526)
                      ++.++++. |++++|.+++++|   .+.||..+|++|+.+|..+|+.+.+....+++.+..+..+.....+..+..    
T Consensus       631 lv~~l~r~-G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~  706 (857)
T PLN03077        631 VVDLLGRA-GKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK  706 (857)
T ss_pred             HHHHHHhC-CCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence            77776665 7777777777666   356677777777777766677776666666666666654443333322211    


Q ss_pred             ------HHHH-----HHHHhcCccchhHHHHH----------------HHH-HHHHHHHhcCCcccc
Q 043068          483 ------ALLL-----MWIVTGGSWISRFVFVH----------------QVV-VIMERTVEDGKRSEC  521 (526)
Q Consensus       483 ------~~~~-----~~~~~g~~~~~~~~~~~----------------~~~-~~~~~~~~~g~~~~~  521 (526)
                            ..-.     ..+.+|+||+|.+..+|                +.+ .+.++.-+.||.+|.
T Consensus       707 ~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~  773 (857)
T PLN03077        707 WDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE  773 (857)
T ss_pred             hHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence                  0011     11467899998654432                222 244444478998774

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=7.2e-55  Score=466.15  Aligned_cols=414  Identities=16%  Similarity=0.222  Sum_probs=379.8

Q ss_pred             CCChHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCc------------------------------CChhhHHHHHHH
Q 043068           52 CLGSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYH------------------------------HTTPCYTAITDV  101 (526)
Q Consensus        52 ~~~~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~  101 (526)
                      ..+.+.++..+.+.|++++|+.+|+.+...+..|+...                              .+...++.++..
T Consensus        51 ~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~  130 (857)
T PLN03077         51 THDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSM  130 (857)
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Confidence            34557788888999999999999998876532222211                              223467889999


Q ss_pred             HHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 043068          102 LLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFF  181 (526)
Q Consensus       102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  181 (526)
                      |++.|+++.|..+|+++..++..+|+.+|.+|++.|++++|+++|++|...|+.||..+|+.++.+|++.+++..+.+++
T Consensus       131 ~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~  210 (857)
T PLN03077        131 FVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH  210 (857)
T ss_pred             HHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043068          182 HQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE  261 (526)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  261 (526)
                      ..+.+.| +.||..+++.|+.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||.
T Consensus       211 ~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~  288 (857)
T PLN03077        211 AHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMP-RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL  288 (857)
T ss_pred             HHHHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence            9999998 89999999999999999999999999999997 689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043068          262 LTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGF  341 (526)
Q Consensus       262 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~  341 (526)
                      .||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++++.+|++.|++++|.++|++|.    .||..+|+.+|.+|
T Consensus       289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~  364 (857)
T PLN03077        289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGY  364 (857)
T ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999986    36888999999999


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHH
Q 043068          342 CKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDV  421 (526)
Q Consensus       342 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a  421 (526)
                      ++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++. |++++|
T Consensus       365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~-g~~~~A  443 (857)
T PLN03077        365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC-KCIDKA  443 (857)
T ss_pred             HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc-CCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999987 999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHH
Q 043068          422 EDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLT  478 (526)
Q Consensus       422 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~  478 (526)
                      .++|++|.    .+|..+|+.++.+|++.|+.++|.++|++|.+.  ..|+..++..
T Consensus       444 ~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~--~~pd~~t~~~  494 (857)
T PLN03077        444 LEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT--LKPNSVTLIA  494 (857)
T ss_pred             HHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC--CCCCHhHHHH
Confidence            99999985    457889999999999999999999999999763  3566666643

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3e-52  Score=435.78  Aligned_cols=426  Identities=16%  Similarity=0.238  Sum_probs=386.4

Q ss_pred             ChHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhc----CCCCHHHHHHH
Q 043068           54 GSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNS----NKLSDFFISKL  129 (526)
Q Consensus        54 ~~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~l  129 (526)
                      +.+.+...+.+.|+++.|.++|+.+..    |     +..+|+.++.+|++.|++++|..+|+++    ..++..+|+.+
T Consensus       160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~----~-----~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l  230 (697)
T PLN03081        160 MMNRVLLMHVKCGMLIDARRLFDEMPE----R-----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM  230 (697)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhcCCC----C-----CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH
Confidence            446778888889999999999998753    2     3346999999999999999999999875    46778899999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 043068          130 IKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGM  209 (526)
Q Consensus       130 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  209 (526)
                      +.+|+..|+.+.+.+++..+.+.|..+|..+|+.|+.+|++.|++++|.++|++|.     ++|..+|+.++.+|++.|+
T Consensus       231 l~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li~~y~~~g~  305 (697)
T PLN03081        231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGYALHGY  305 (697)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----CCChhHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999985     4689999999999999999


Q ss_pred             hhhHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068          210 IENAKKVFDVM---TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAK  286 (526)
Q Consensus       210 ~~~A~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  286 (526)
                      +++|.++|++|   ++.||..||++++.+|++.|++++|.+++.+|.+.|+.||..+|+.|+++|++.|++++|.++|++
T Consensus       306 ~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~  385 (697)
T PLN03081        306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR  385 (697)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh
Confidence            99999999999   789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCC
Q 043068          287 MRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA-RGLKPT  365 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~  365 (526)
                      |.    .+|..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+
T Consensus       386 m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~  461 (697)
T PLN03081        386 MP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR  461 (697)
T ss_pred             CC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Confidence            96    5899999999999999999999999999999999999999999999999999999999999999976 599999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043068          366 VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLK  445 (526)
Q Consensus       366 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  445 (526)
                      ..+|+.++.+|++.|++++|.+++++|.   +.|+..+|+.++.+++.. |+++.|..+++++.+.++. +..+|..|++
T Consensus       462 ~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~~~~-g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~  536 (697)
T PLN03081        462 AMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIH-KNLELGRLAAEKLYGMGPE-KLNNYVVLLN  536 (697)
T ss_pred             ccchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHhCCCCC-CCcchHHHHH
Confidence            9999999999999999999999999874   679999999999997765 9999999999999865433 5779999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHHHHHHHHhcCccchhHHH-----------------HHHHHHH
Q 043068          446 GYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISRFVF-----------------VHQVVVI  508 (526)
Q Consensus       446 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------------~~~~~~~  508 (526)
                      .|++.|++++|.+++++|.++|...+                   +|++|++.+..                 ....-.+
T Consensus       537 ~y~~~G~~~~A~~v~~~m~~~g~~k~-------------------~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l  597 (697)
T PLN03081        537 LYNSSGRQAEAAKVVETLKRKGLSMH-------------------PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDEL  597 (697)
T ss_pred             HHHhCCCHHHHHHHHHHHHHcCCccC-------------------CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHH
Confidence            99999999999999999999998544                   48888875422                 2222344


Q ss_pred             HHHHHhcCCcccc
Q 043068          509 MERTVEDGKRSEC  521 (526)
Q Consensus       509 ~~~~~~~g~~~~~  521 (526)
                      +++.-+.||.+|.
T Consensus       598 ~~~~~~~gy~~~~  610 (697)
T PLN03081        598 MKEISEYGYVAEE  610 (697)
T ss_pred             HHHHHHcCCCCCc
Confidence            4444478888874

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.97  E-value=1.5e-26  Score=252.64  Aligned_cols=406  Identities=14%  Similarity=0.139  Sum_probs=285.6

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC----------------
Q 043068           56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN----------------  119 (526)
Q Consensus        56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------------  119 (526)
                      ..+..++...|++++|+.+|+++....|.      ....+..++..+...|++++|...+++..                
T Consensus       367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  440 (899)
T TIGR02917       367 SLLGEAYLALGDFEKAAEYLAKATELDPE------NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILS  440 (899)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHH
Confidence            34556666677788888888777765442      12334555555555555555555544322                


Q ss_pred             ---------------------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 043068          120 ---------------------KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAE  178 (526)
Q Consensus       120 ---------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  178 (526)
                                           +.++..+..+...|...|++++|.+.|+++....+ .+...+..+...+...|++++|.
T Consensus       441 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~  519 (899)
T TIGR02917       441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAI  519 (899)
T ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHH
Confidence                                 22344556666666666777777777766665443 33455566666666677777777


Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043068          179 EFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRG  256 (526)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  256 (526)
                      +.|+++.+.+  |.+..++..+...+.+.|+.++|..+++++  ..+.+...+..++..+.+.|++++|.++++++.+..
T Consensus       520 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  597 (899)
T TIGR02917       520 QRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA  597 (899)
T ss_pred             HHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            7777776654  556667777777777777777777777766  223345566677777777778888888777777653


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043068          257 CRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEV  336 (526)
Q Consensus       257 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  336 (526)
                       +.+..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|..+++++.+..+. +..++..
T Consensus       598 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~  674 (899)
T TIGR02917       598 -PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIG  674 (899)
T ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHH
Confidence             3366777788888888888888888888877654 456667777888888888888888888888776433 5677788


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCC
Q 043068          337 VINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKG  416 (526)
Q Consensus       337 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g  416 (526)
                      ++..+...|++++|.++++.+.+.+ +.+...+..+...+.+.|++++|.+.|+.+...+  |+..++..+...+... |
T Consensus       675 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~-g  750 (899)
T TIGR02917       675 LAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLAS-G  750 (899)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHC-C
Confidence            8888888888888888888887664 3456677778888888888888888888888744  5556666677776665 8


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHH
Q 043068          417 RMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLT  478 (526)
Q Consensus       417 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~  478 (526)
                      +.++|.+.++++++..+. +...+..+...|.+.|++++|.+.|+++++.++..+...+.++
T Consensus       751 ~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  811 (899)
T TIGR02917       751 NTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLA  811 (899)
T ss_pred             CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            888898888888886543 7788888888889999999999999999888876665555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.97  E-value=7.6e-26  Score=247.09  Aligned_cols=399  Identities=12%  Similarity=0.102  Sum_probs=248.1

Q ss_pred             HHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHH
Q 043068           57 IVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAY  133 (526)
Q Consensus        57 ~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~  133 (526)
                      .+..++...|++++|...|+.+.+..|.      ...++..++..+...|++++|...+++..   +.+...+..+...+
T Consensus       470 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  543 (899)
T TIGR02917       470 LLGAIYLGKGDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLY  543 (899)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence            3444555556666666666665554332      12335555666666666666666665432   22334555566666


Q ss_pred             HcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhH
Q 043068          134 GDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENA  213 (526)
Q Consensus       134 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  213 (526)
                      ...|++++|..+|+++...++ .+...+..++..+.+.|++++|.++++.+.+..  +.+..+|..+..++.+.|++++|
T Consensus       544 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A  620 (899)
T TIGR02917       544 LRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGDLNKA  620 (899)
T ss_pred             HHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHH
Confidence            666666666666666655443 344555566666666666666666666666554  55666666666666666666666


Q ss_pred             HHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043068          214 KKVFDVM-T-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNG  291 (526)
Q Consensus       214 ~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  291 (526)
                      .+.|+++ . .+.+...+..+..++.+.|++++|...|+++.+.. +.+..++..++..+...|++++|..+++.+.+..
T Consensus       621 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  699 (899)
T TIGR02917       621 VSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH  699 (899)
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            6666665 2 12345556666666666677777777666666543 2245566666666666777777777776666554


Q ss_pred             CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 043068          292 FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNA  371 (526)
Q Consensus       292 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~  371 (526)
                       +.+...+..+...+.+.|++++|...|+++...+.  +..++..++..+.+.|++++|.+.++++.+.. +.+...+..
T Consensus       700 -~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~  775 (899)
T TIGR02917       700 -PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTA  775 (899)
T ss_pred             -cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence             45556666666677777777777777777666543  33555666667777777777777777766543 335566666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 043068          372 VFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEG  451 (526)
Q Consensus       372 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  451 (526)
                      +...|.+.|++++|.+.|+++.+.. +.+...++.+...+... |+ .+|..+++++.+..+. ++.++..+..++.+.|
T Consensus       776 la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~-~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g  851 (899)
T TIGR02917       776 LAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLEL-KD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKG  851 (899)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc-Cc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcC
Confidence            7777777777777777777776643 23455566666555544 66 6677777777765433 5566667777777777


Q ss_pred             CHHHHHHHHHHHHHcCCCccch
Q 043068          452 NVENVMQIAHEMVTKKGRLLKL  473 (526)
Q Consensus       452 ~~~~a~~~~~~m~~~~~~~~~~  473 (526)
                      ++++|.+.++++++.++..+.+
T Consensus       852 ~~~~A~~~~~~a~~~~~~~~~~  873 (899)
T TIGR02917       852 EADRALPLLRKAVNIAPEAAAI  873 (899)
T ss_pred             CHHHHHHHHHHHHhhCCCChHH
Confidence            7777777777777777654443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.96  E-value=4.3e-25  Score=207.06  Aligned_cols=438  Identities=18%  Similarity=0.186  Sum_probs=360.6

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcC----------------------------ChhhHHHHHHHHHhCCC
Q 043068           56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHH----------------------------TTPCYTAITDVLLSHSL  107 (526)
Q Consensus        56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~----------------------------~~~~~~~l~~~~~~~~~  107 (526)
                      ..+.+-+...||+++|++.-..+..++|.......                            ...+|..++.++-..|+
T Consensus        52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~  131 (966)
T KOG4626|consen   52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ  131 (966)
T ss_pred             HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence            44556666689999999988888777665432211                            12368888899989999


Q ss_pred             HHHHHHHHHhcCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhH-HHHHHHHHhcCChhHHHHHHHH
Q 043068          108 ISIAASLLKNSNKLSDF---FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSY-NSLLGVLVRVNSIKLAEEFFHQ  183 (526)
Q Consensus       108 ~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~  183 (526)
                      ++.|..+++.+...++.   .|..+..++...|+.+.|.+.|.+..+.+  |+.... ..+...+...|++++|...|.+
T Consensus       132 ~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlk  209 (966)
T KOG4626|consen  132 LQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLK  209 (966)
T ss_pred             HHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHH
Confidence            99999999988766553   67788889999999999999999988776  554433 3344455567999999999999


Q ss_pred             HHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C
Q 043068          184 IVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPN-LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRP-N  260 (526)
Q Consensus       184 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~  260 (526)
                      .++..  |--...|..|...+-..|++..|++.|++. .+.|+ ...|-.|...|...+.+++|...|.+....  .| .
T Consensus       210 Ai~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~  285 (966)
T KOG4626|consen  210 AIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNH  285 (966)
T ss_pred             HHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcc
Confidence            88875  555678999999999999999999999987 66776 558999999999999999999999998876  44 4


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043068          261 ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVING  340 (526)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~  340 (526)
                      ...|..+...|...|.++.|+..|++..+.. +.-...|+.|..++-..|++.+|+..|.+.+..... ...+.+.|...
T Consensus       286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni  363 (966)
T KOG4626|consen  286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNI  363 (966)
T ss_pred             hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence            5678888888999999999999999998764 445679999999999999999999999999987544 67788999999


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCH-HHHHHHHHHHHhcCCCH
Q 043068          341 FCKIGKSDEAISLLKEMRARGLKPT-VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNF-VSYNTIICGLCMAKGRM  418 (526)
Q Consensus       341 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~g~~  418 (526)
                      |...|.+++|..+|....+-  .|. ...++.|...|-++|++++|+..+++.+.  +.|+. ..|+.+-..| +..|++
T Consensus       364 ~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~-ke~g~v  438 (966)
T KOG4626|consen  364 YREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTY-KEMGDV  438 (966)
T ss_pred             HHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHH-HHhhhH
Confidence            99999999999999998875  444 45789999999999999999999999998  67884 4566666665 445999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHHHHHHHHhcCccchh
Q 043068          419 QDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISR  498 (526)
Q Consensus       419 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  498 (526)
                      ++|.+.+.+++..++. =....+.|...|...|+..+|++-+++.++..++.|+..-.+        ..-...-|.|.+.
T Consensus       439 ~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl--------lh~lq~vcdw~D~  509 (966)
T KOG4626|consen  439 SAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL--------LHCLQIVCDWTDY  509 (966)
T ss_pred             HHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH--------HHHHHHHhcccch
Confidence            9999999999975433 346889999999999999999999999999999999865443        2234456899999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 043068          499 FVFVHQVVVIMERTVED  515 (526)
Q Consensus       499 ~~~~~~~~~~~~~~~~~  515 (526)
                      .+.+.+.+++++..++.
T Consensus       510 d~~~~kl~sivrdql~~  526 (966)
T KOG4626|consen  510 DKRMKKLVSIVRDQLEK  526 (966)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999999843

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.92  E-value=6.2e-22  Score=194.46  Aligned_cols=303  Identities=13%  Similarity=0.142  Sum_probs=206.3

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHHc
Q 043068          130 IKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPP--DVSTYTTMIRGYCKM  207 (526)
Q Consensus       130 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~  207 (526)
                      ...+...|++++|+..|+++.+.++ .+..++..+...+...|++++|..+++.+.+.+...+  ...++..++..|.+.
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            3345667888888888888877653 3456777788888888888888888888776531111  124567777778888


Q ss_pred             CChhhHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHH
Q 043068          208 GMIENAKKVFDVM-T-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE----LTYNAMIYGLCINGRVDEAK  281 (526)
Q Consensus       208 g~~~~A~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~  281 (526)
                      |++++|.++|+++ . .+.+..++..++..+.+.|++++|.+.++++.+.+..+..    ..+..+...+.+.|++++|.
T Consensus       121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  200 (389)
T PRK11788        121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR  200 (389)
T ss_pred             CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            8888888888777 2 2345667777788888888888888888887766433221    23445666677777777777


Q ss_pred             HHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043068          282 MLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARG  361 (526)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  361 (526)
                      ..++++.+.. +.+...+..++..+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+. 
T Consensus       201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-  278 (389)
T PRK11788        201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-  278 (389)
T ss_pred             HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence            7777776653 34455666677777777777777777777776543323455667777777777777777777777665 


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCCCCHH
Q 043068          362 LKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMA--KGRMQDVEDLVDRMIRSGHNLDFT  438 (526)
Q Consensus       362 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--~g~~~~a~~~~~~~~~~~~~p~~~  438 (526)
                       .|+...+..++..+.+.|++++|.++++++.+.  .|+...++.++..++..  .|+.+++..++++|++.++.|++.
T Consensus       279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence             355555566777777777777777777777663  47777777666665532  246777777777777665555544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.92  E-value=1e-20  Score=208.11  Aligned_cols=394  Identities=13%  Similarity=0.092  Sum_probs=308.9

Q ss_pred             HHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCH-----HHH-------
Q 043068           59 TKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSD-----FFI-------  126 (526)
Q Consensus        59 ~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~-------  126 (526)
                      ...+...|++++|+..|+.+++..|+      +..++..++.++.+.|++++|...|++....++     ..+       
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~------~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~  349 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPK------DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN  349 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence            45556689999999999999987663      355788999999999999999999987543221     111       


Q ss_pred             -----HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 043068          127 -----SKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMI  201 (526)
Q Consensus       127 -----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li  201 (526)
                           ..+...+.+.|++++|+..|+++....+ .+...+..+..++...|++++|++.|+++++..  |.+...+..+.
T Consensus       350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~  426 (1157)
T PRK11447        350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLA  426 (1157)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence                 1234567789999999999999998775 457788889999999999999999999999876  67788888888


Q ss_pred             HHHHHcCChhhHHHHHHhCCCC-C----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043068          202 RGYCKMGMIENAKKVFDVMTVK-P----------NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYG  270 (526)
Q Consensus       202 ~~~~~~g~~~~A~~~~~~~~~~-p----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  270 (526)
                      ..|. .++.++|..+++.+... +          ....+..+...+...|++++|++.|++.++.... +...+..+...
T Consensus       427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~  504 (1157)
T PRK11447        427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQD  504 (1157)
T ss_pred             HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            8875 46789999999876211 1          1223556778888999999999999999987433 56777889999


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHH
Q 043068          271 LCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVK---------SYEVVINGF  341 (526)
Q Consensus       271 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~li~~~  341 (526)
                      |.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++..         .+..+...+
T Consensus       505 ~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l  583 (1157)
T PRK11447        505 LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL  583 (1157)
T ss_pred             HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence            999999999999999998754 4556666666667788999999999998865433222221         233456778


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHH
Q 043068          342 CKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDV  421 (526)
Q Consensus       342 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a  421 (526)
                      ...|+.++|+++++.     .+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+...+... |+.++|
T Consensus       584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~-g~~~eA  656 (1157)
T PRK11447        584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQ-GDLAAA  656 (1157)
T ss_pred             HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC-CCHHHH
Confidence            899999999999872     24456677788899999999999999999998853 23466677777777665 999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccc
Q 043068          422 EDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLK  472 (526)
Q Consensus       422 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~  472 (526)
                      ++.++.+.+.... +..++..+..++.+.|++++|.++++++++..+..++
T Consensus       657 ~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~  706 (1157)
T PRK11447        657 RAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP  706 (1157)
T ss_pred             HHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence            9999998875433 5677888899999999999999999999988765554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=3.6e-21  Score=189.03  Aligned_cols=297  Identities=13%  Similarity=0.142  Sum_probs=249.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCC------HHHHHHHHHHHH
Q 043068          164 LLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPN------LLAYNTMINGFC  237 (526)
Q Consensus       164 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~li~~~~  237 (526)
                      ....+...|++++|+..|.++.+.+  |.+..++..+...+...|++++|.++++.+-..|+      ...+..++..|.
T Consensus        41 ~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~  118 (389)
T PRK11788         41 KGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL  118 (389)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            3445678899999999999999986  77888999999999999999999999998822222      246788999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHHcCCHH
Q 043068          238 KKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN----VSTHKSMLKGLCVVGKFD  313 (526)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~  313 (526)
                      +.|++++|.++|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.    ...+..++..+.+.|+++
T Consensus       119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  197 (389)
T PRK11788        119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD  197 (389)
T ss_pred             HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999998763 34678899999999999999999999999987653322    224566788889999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q 043068          314 QAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMP  393 (526)
Q Consensus       314 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~  393 (526)
                      +|...++++.+.... +...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|.+.++++.
T Consensus       198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~  276 (389)
T PRK11788        198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL  276 (389)
T ss_pred             HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999987533 5678888999999999999999999999876322224578889999999999999999999998


Q ss_pred             cCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCC
Q 043068          394 QMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCE---EGNVENVMQIAHEMVTKKGR  469 (526)
Q Consensus       394 ~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~  469 (526)
                      +.  .|+...+..+...+.+. |++++|..+++++++.  .|+...+..++..+..   .|+.+++..++++|+++++.
T Consensus       277 ~~--~p~~~~~~~la~~~~~~-g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~  350 (389)
T PRK11788        277 EE--YPGADLLLALAQLLEEQ-EGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK  350 (389)
T ss_pred             Hh--CCCchHHHHHHHHHHHh-CCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence            85  47777777777777765 9999999999999875  6788899988887775   56999999999999987763

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.91  E-value=1.9e-19  Score=185.66  Aligned_cols=412  Identities=14%  Similarity=0.112  Sum_probs=271.2

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 043068           96 TAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVN  172 (526)
Q Consensus        96 ~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  172 (526)
                      ..++..+.+.|++++|..+++...   +.++..+..++.+....|++++|+..|+++....+ .+...+..+...+.+.|
T Consensus        46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g  124 (656)
T PRK15174         46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSK  124 (656)
T ss_pred             HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcC
Confidence            344556667788888887776542   33444555666666778888888888888887764 44667777788888888


Q ss_pred             ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 043068          173 SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPN-LLAYNTMINGFCKKGELEEAKKCMN  250 (526)
Q Consensus       173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~  250 (526)
                      ++++|...|+++.+..  |.+...+..++.++...|++++|...++.+ ...|+ ...+..+ ..+...|++++|...++
T Consensus       125 ~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~  201 (656)
T PRK15174        125 QYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLAR  201 (656)
T ss_pred             CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence            8888888888888765  667778888888888888888888888766 22333 3333333 34777888888888888


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHH----HHHHHHHHHHcC
Q 043068          251 EMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQ----AVGYLRNVMEAN  326 (526)
Q Consensus       251 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~  326 (526)
                      .+.+....++...+..+..++.+.|++++|+..++++.+.. +.+...+..+...+...|++++    |...+++..+..
T Consensus       202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~  280 (656)
T PRK15174        202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN  280 (656)
T ss_pred             HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence            87776433444555556677788888888888888887765 5567777788888888888875    788888888765


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHH
Q 043068          327 MNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNT  406 (526)
Q Consensus       327 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~  406 (526)
                      +. +...+..+...+...|++++|+..+++..+.. +-+...+..+..++.+.|++++|++.++.+.+.  .|+...+..
T Consensus       281 P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~  356 (656)
T PRK15174        281 SD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNR  356 (656)
T ss_pred             CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHH
Confidence            44 66778888888888888888888888887753 223456667778888888888888888888764  355444333


Q ss_pred             -HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHcC-CCccchhhh---H
Q 043068          407 -IICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMY----SCLLKGYCEEGNVENVMQIAHEMVTKK-GRLLKLKNF---L  477 (526)
Q Consensus       407 -ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~---~  477 (526)
                       +...+.. .|+.++|...++++++..+.--...|    ..+-.++...+..++...-..++.-.+ ...++..+-   .
T Consensus       357 ~~a~al~~-~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~  435 (656)
T PRK15174        357 YAAAALLQ-AGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVAGRQSGIERDEWERRAKW  435 (656)
T ss_pred             HHHHHHHH-CCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHhcccccCChHHHHHHHHh
Confidence             2334444 48888888888888775433112222    233333333444433322223322111 112222221   3


Q ss_pred             HHHHHHHHHHHHHhcCccchhHH----HHHHHHHHHHHHHhcCC
Q 043068          478 TRVVDALLLMWIVTGGSWISRFV----FVHQVVVIMERTVEDGK  517 (526)
Q Consensus       478 ~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~g~  517 (526)
                      ..++|..+..|..+-+..++.-.    .+...-..++++.+.|.
T Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~k  479 (656)
T PRK15174        436 GYLADNFLLDWLECRGEQADEPMYRLADISHVEQFFQRLQLDQR  479 (656)
T ss_pred             hHHHHHHHHHHHHhcccchhhHHHHHhhhhhHHHHHHHHHhcCC
Confidence            45778888888777666555322    22233333666665553

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=5.7e-21  Score=179.68  Aligned_cols=375  Identities=17%  Similarity=0.179  Sum_probs=312.9

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHH---HHHHHH
Q 043068           56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFI---SKLIKA  132 (526)
Q Consensus        56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~li~~  132 (526)
                      ..+..+++..|+.+.|+.+++.+++..|+      ...+|..++.+|...|+.+.|...|......++..+   +-+...
T Consensus       120 sn~aN~~kerg~~~~al~~y~~aiel~p~------fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL  193 (966)
T KOG4626|consen  120 SNLANILKERGQLQDALALYRAAIELKPK------FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL  193 (966)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHhcCch------hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence            34678889999999999999999987662      345799999999999999999999998887776533   345556


Q ss_pred             HHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhh
Q 043068          133 YGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIEN  212 (526)
Q Consensus       133 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  212 (526)
                      +-..|+..+|...|.++.+..+ --..+|..|...+-..|+...|++-|++.++.+  |.-...|..|...|...+.+++
T Consensus       194 lka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~  270 (966)
T KOG4626|consen  194 LKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDR  270 (966)
T ss_pred             HHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchH
Confidence            6678999999999999987663 236789999999999999999999999999876  5567899999999999999999


Q ss_pred             HHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068          213 AKKVFDVM-TVKPN-LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLN  290 (526)
Q Consensus       213 A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  290 (526)
                      |...+.+. ...|+ ...+..+...|...|.+|-|++.|++.++.... =...|+.|..++-..|++.+|.+.|.+....
T Consensus       271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l  349 (966)
T KOG4626|consen  271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRL  349 (966)
T ss_pred             HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence            99999886 45554 567888999999999999999999999987332 3678999999999999999999999999876


Q ss_pred             CCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHH
Q 043068          291 GFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPT-VFSF  369 (526)
Q Consensus       291 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~  369 (526)
                      . +......+.+...|...|.+++|..+|....+..+. -...++.|...|-+.|++++|+..+++..+.  .|+ ...|
T Consensus       350 ~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~  425 (966)
T KOG4626|consen  350 C-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADAL  425 (966)
T ss_pred             C-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHH
Confidence            4 555678899999999999999999999999886433 3457899999999999999999999999875  666 4588


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043068          370 NAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGY  447 (526)
Q Consensus       370 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  447 (526)
                      +.+-..|-..|+++.|++.+.+.+.  +.|....-..=+..+.+..|++.+|+.-++..++..+. -+..|-.++.+.
T Consensus       426 ~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh~l  500 (966)
T KOG4626|consen  426 SNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLHCL  500 (966)
T ss_pred             HhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHHHHHH
Confidence            9999999999999999999999998  55775544444444457779999999999999985433 234565666554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.90  E-value=4.1e-19  Score=187.07  Aligned_cols=410  Identities=10%  Similarity=0.037  Sum_probs=309.6

Q ss_pred             CChHHHH---HHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHH
Q 043068           53 LGSNIVT---KVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFI  126 (526)
Q Consensus        53 ~~~~~l~---~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~  126 (526)
                      +++..|.   .+....|+.++|++.+..+....|      .....+..++..+.+.|++++|..++++..   +.++..+
T Consensus        13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~------~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~   86 (765)
T PRK10049         13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ------LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQ   86 (765)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            3444454   455668999999999998875333      223458899999999999999999999843   4456677


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 043068          127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK  206 (526)
Q Consensus       127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~  206 (526)
                      ..++..+...|++++|+..++++....+ .+.. +..+..++...|+.++|+..++++.+..  |.+...+..+..++..
T Consensus        87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~  162 (765)
T PRK10049         87 RGLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRN  162 (765)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence            7888999999999999999999988764 4456 8888999999999999999999999987  7788888889999999


Q ss_pred             cCChhhHHHHHHhCCCCCCHH------HHHHHHHHHH-----hcCCH---HHHHHHHHHHHHc-CCCCCHH-HHH----H
Q 043068          207 MGMIENAKKVFDVMTVKPNLL------AYNTMINGFC-----KKGEL---EEAKKCMNEMMNR-GCRPNEL-TYN----A  266 (526)
Q Consensus       207 ~g~~~~A~~~~~~~~~~p~~~------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~~----~  266 (526)
                      .|..++|.+.++.....|+..      ....++....     ..+++   ++|++.++.+.+. ...|+.. .+.    .
T Consensus       163 ~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d  242 (765)
T PRK10049        163 NRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID  242 (765)
T ss_pred             CCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence            999999999999885454421      1122222222     22334   7889999998864 2233321 111    1


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHh
Q 043068          267 MIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNP---DVKSYEVVINGFCK  343 (526)
Q Consensus       267 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~  343 (526)
                      .+.++...|++++|+..|+.+.+.+.+........+...|...|++++|+.+|+++.+.....   .......+..++..
T Consensus       243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~  322 (765)
T PRK10049        243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE  322 (765)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence            134556779999999999999887632122233336789999999999999999988764321   13456667778899


Q ss_pred             cCChhHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC-HHHHHHHH
Q 043068          344 IGKSDEAISLLKEMRARGL-----------KPT---VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN-FVSYNTII  408 (526)
Q Consensus       344 ~g~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll  408 (526)
                      .|++++|.++++.+.+...           .|+   ...+..+...+...|+.++|+++++++....  |+ ...+..+.
T Consensus       323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA  400 (765)
T PRK10049        323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYA  400 (765)
T ss_pred             cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence            9999999999999987521           123   2245567788899999999999999998743  54 44555555


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhh
Q 043068          409 CGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNF  476 (526)
Q Consensus       409 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  476 (526)
                      ..+.. .|+.++|++.+++.++..+. +...+..++..+.+.|++++|+.+++++++..++.+.+..+
T Consensus       401 ~l~~~-~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~  466 (765)
T PRK10049        401 SVLQA-RGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL  466 (765)
T ss_pred             HHHHh-cCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            55544 59999999999999986533 57788888889999999999999999999999988765555

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.90  E-value=6.9e-19  Score=182.08  Aligned_cols=389  Identities=14%  Similarity=0.098  Sum_probs=272.9

Q ss_pred             HHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHc
Q 043068           59 TKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKL---SDFFISKLIKAYGD  135 (526)
Q Consensus        59 ~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~  135 (526)
                      ...+...|+++.|+..|+.++...|++       ..|..++.++.+.|++++|...+++....   ....+..+..+|..
T Consensus       134 G~~~~~~~~~~~Ai~~y~~al~~~p~~-------~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       134 GNKAYRNKDFNKAIKLYSKAIECKPDP-------VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCch-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            344455677777777777777665532       24666777777777777777777765432   33466667777777


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHH------------------
Q 043068          136 RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTY------------------  197 (526)
Q Consensus       136 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------------------  197 (526)
                      .|++++|+..|......+...+.. ...++..+..    ..+........+..  +++...+                  
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  279 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK--PENLPSVTFVGNYLQSFRPKPRPAG  279 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHccCCcchhh
Confidence            777777777776554433211111 1111111111    11111112221111  1110000                  


Q ss_pred             ---------------HHHHHHH---HHcCChhhHHHHHHhC-C---CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043068          198 ---------------TTMIRGY---CKMGMIENAKKVFDVM-T---VKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMN  254 (526)
Q Consensus       198 ---------------~~li~~~---~~~g~~~~A~~~~~~~-~---~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  254 (526)
                                     ..+...+   ...+++++|.+.|++. .   ..| ....|+.+...+...|++++|+..|++.++
T Consensus       280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~  359 (615)
T TIGR00990       280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE  359 (615)
T ss_pred             hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                           0000000   1236788999999886 2   223 455788888999999999999999999988


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043068          255 RGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSY  334 (526)
Q Consensus       255 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  334 (526)
                      .... ....|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|++.++..+. +...+
T Consensus       360 l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~  436 (615)
T TIGR00990       360 LDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSH  436 (615)
T ss_pred             cCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHH
Confidence            6322 46688888999999999999999999998765 567889999999999999999999999999988644 67788


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCH-------H-HHHH
Q 043068          335 EVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNF-------V-SYNT  406 (526)
Q Consensus       335 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~-~~~~  406 (526)
                      ..+...+.+.|++++|+..|++..+.. +-+...++.+...+...|++++|++.|++..+..  |+.       . .++.
T Consensus       437 ~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~  513 (615)
T TIGR00990       437 IQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLINK  513 (615)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHHHH
Confidence            889999999999999999999998752 3356788999999999999999999999988742  321       1 1111


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 043068          407 IICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGR  469 (526)
Q Consensus       407 ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  469 (526)
                      .. .+....|++++|.+++++.++..+. +...+..+...+.+.|++++|++.|++..+....
T Consensus       514 a~-~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~  574 (615)
T TIGR00990       514 AL-ALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAELART  574 (615)
T ss_pred             HH-HHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence            12 2223248999999999999887543 5567899999999999999999999999888653

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.90  E-value=2.4e-18  Score=189.51  Aligned_cols=405  Identities=13%  Similarity=0.045  Sum_probs=274.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCC---CCHHHHHHHHHHHH
Q 043068           58 VTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNK---LSDFFISKLIKAYG  134 (526)
Q Consensus        58 l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~  134 (526)
                      ..+++...|++++|++.|+.+....|.....     ............++.++|...+++...   .++.....+...+.
T Consensus       118 ~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~l-----a~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~  192 (1157)
T PRK11447        118 QARLLATTGRTEEALASYDKLFNGAPPELDL-----AVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLF  192 (1157)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHccCCCCChHH-----HHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3456777899999999999998765532110     111112222345888888888887553   34456778888888


Q ss_pred             cCCCHHHHHHHHHHHHhcCCC--------------------------------CChhh-------H--------------
Q 043068          135 DRGNVKAAIFWFHQAKQIENG--------------------------------ACLYS-------Y--------------  161 (526)
Q Consensus       135 ~~g~~~~A~~~~~~~~~~~~~--------------------------------~~~~~-------~--------------  161 (526)
                      ..|++++|++.++++......                                |+...       +              
T Consensus       193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~  272 (1157)
T PRK11447        193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA  272 (1157)
T ss_pred             ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence            889988888888876432210                                00000       0              


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCH---HHH--------
Q 043068          162 NSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNL---LAY--------  229 (526)
Q Consensus       162 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~---~~~--------  229 (526)
                      ......+...|++++|+..|++.++..  |.+..++..+..++.+.|++++|+..|++. ...|+.   ..|        
T Consensus       273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~  350 (1157)
T PRK11447        273 RAQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR  350 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence            011344667789999999999998876  678888999999999999999999998886 333321   112        


Q ss_pred             ----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHH----
Q 043068          230 ----NTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKS----  301 (526)
Q Consensus       230 ----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----  301 (526)
                          ......+.+.|++++|+..|+++.+... .+...+..+...+...|++++|++.|+++.+.. +.+...+..    
T Consensus       351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l  428 (1157)
T PRK11447        351 YWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANL  428 (1157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence                1224567788999999999999888743 256677778888889999999999998887653 233333322    


Q ss_pred             --------------------------------------HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043068          302 --------------------------------------MLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCK  343 (526)
Q Consensus       302 --------------------------------------li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~  343 (526)
                                                            +...+...|++++|++.|++.++..+. +...+..+...|.+
T Consensus       429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~  507 (1157)
T PRK11447        429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQ  507 (1157)
T ss_pred             HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence                                                  233445678889999999988887554 66777888888999


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCC---------------------------
Q 043068          344 IGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMD---------------------------  396 (526)
Q Consensus       344 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------------------------  396 (526)
                      .|++++|+..++++.+... -+...+..+...+.+.|+.++|+..++.+....                           
T Consensus       508 ~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~  586 (1157)
T PRK11447        508 AGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS  586 (1157)
T ss_pred             cCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence            9999999999998876521 122233223333344444444444444332110                           


Q ss_pred             ------------CCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043068          397 ------------CLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMV  464 (526)
Q Consensus       397 ------------~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  464 (526)
                                  .+.+...+..+...+.. .|+.++|++.+++.++..+. +...+..++..|...|++++|++.++++.
T Consensus       587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~-~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll  664 (1157)
T PRK11447        587 GKEAEAEALLRQQPPSTRIDLTLADWAQQ-RGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLP  664 (1157)
T ss_pred             CCHHHHHHHHHhCCCCchHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence                        11233334444444444 49999999999999987554 78889999999999999999999999998


Q ss_pred             HcCCCccchhh
Q 043068          465 TKKGRLLKLKN  475 (526)
Q Consensus       465 ~~~~~~~~~~~  475 (526)
                      +..+..+....
T Consensus       665 ~~~p~~~~~~~  675 (1157)
T PRK11447        665 ATANDSLNTQR  675 (1157)
T ss_pred             ccCCCChHHHH
Confidence            88776555433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.89  E-value=3.3e-19  Score=183.90  Aligned_cols=335  Identities=10%  Similarity=0.044  Sum_probs=272.9

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068          126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC  205 (526)
Q Consensus       126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~  205 (526)
                      ...++..+.+.|++++|+.+++......+. +...+..++.+....|++++|...|+++.+..  |.+...+..+...+.
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~  121 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLL  121 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHH
Confidence            345677788999999999999999877753 35566666777888999999999999999987  788899999999999


Q ss_pred             HcCChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043068          206 KMGMIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKML  283 (526)
Q Consensus       206 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~  283 (526)
                      +.|++++|...+++. ...| +...+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus       122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~  199 (656)
T PRK15174        122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL  199 (656)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence            999999999999997 4444 5678888999999999999999999998776443 23333333 357889999999999


Q ss_pred             HHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHHHHH
Q 043068          284 MAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDE----AISLLKEMRA  359 (526)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~  359 (526)
                      ++.+.+....++......+...+.+.|++++|...++++.+.++. +...+..+...+...|++++    |+..|++..+
T Consensus       200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~  278 (656)
T PRK15174        200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ  278 (656)
T ss_pred             HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence            999877643344555566678899999999999999999987644 67888889999999999986    8999999987


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHH
Q 043068          360 RGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFV-SYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFT  438 (526)
Q Consensus       360 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  438 (526)
                      .. +.+...+..+...+.+.|++++|+..+++..+.  .|+.. .+..+...+.. .|++++|...++++.+.++. +..
T Consensus       279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~-~G~~~eA~~~l~~al~~~P~-~~~  353 (656)
T PRK15174        279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQ-VGQYTAASDEFVQLAREKGV-TSK  353 (656)
T ss_pred             hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcc-chH
Confidence            63 235668889999999999999999999999884  35543 44445555555 59999999999999986443 334


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068          439 MYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLL  471 (526)
Q Consensus       439 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~  471 (526)
                      .+..+..++...|+.++|...|++.++..++.+
T Consensus       354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        354 WNRYAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            455567789999999999999999999988654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.87  E-value=6.5e-18  Score=174.84  Aligned_cols=389  Identities=11%  Similarity=-0.008  Sum_probs=272.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHH
Q 043068           58 VTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYG  134 (526)
Q Consensus        58 l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~  134 (526)
                      +...+...|++++|+..++.++...|+      ...+|..++.++...|++++|...+....   ..+......++..+.
T Consensus       166 ~a~~~~~l~~~~~Ai~~~~~al~l~p~------~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l  239 (615)
T TIGR00990       166 RAACHNALGDWEKVVEDTTAALELDPD------YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL  239 (615)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            344556689999999999999987653      34568889999999999999988776432   222222222222221


Q ss_pred             cCCCHHHHHHHHHHHHhc--------------C-------------CCCC-hhhHHHHHHHH---HhcCChhHHHHHHHH
Q 043068          135 DRGNVKAAIFWFHQAKQI--------------E-------------NGAC-LYSYNSLLGVL---VRVNSIKLAEEFFHQ  183 (526)
Q Consensus       135 ~~g~~~~A~~~~~~~~~~--------------~-------------~~~~-~~~~~~li~~~---~~~g~~~~A~~~~~~  183 (526)
                      .......+...++.-...              .             ..+. ...+..+...+   ...+++++|.+.|+.
T Consensus       240 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~  319 (615)
T TIGR00990       240 KKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEK  319 (615)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            111112222221110000              0             0000 00011111110   123689999999999


Q ss_pred             HHHcCCC-CCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043068          184 IVKENVV-PPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPN-LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN  260 (526)
Q Consensus       184 ~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  260 (526)
                      .++.+.. +.....|..+...+...|++++|+..|++. ...|+ ...|..+...+...|++++|+..|++.++... .+
T Consensus       320 al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~  398 (615)
T TIGR00990       320 ALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-ED  398 (615)
T ss_pred             HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CC
Confidence            9976522 445678889999999999999999999987 44555 56888999999999999999999999988743 35


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043068          261 ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVING  340 (526)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~  340 (526)
                      ...|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++.++..+. +...++.+...
T Consensus       399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~  476 (615)
T TIGR00990       399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGEL  476 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence            7888999999999999999999999998875 567788888999999999999999999999886433 67889999999


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCH-HHHHHHHHHHHh
Q 043068          341 FCKIGKSDEAISLLKEMRARGLKPTVF------SFNAVFRILVENGELDRAILLLKQMPQMDCLPNF-VSYNTIICGLCM  413 (526)
Q Consensus       341 ~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~  413 (526)
                      +...|++++|++.|++..+.....+..      .++.....+...|++++|.+++++..+..  |+. ..+..+...+..
T Consensus       477 ~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~  554 (615)
T TIGR00990       477 LLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQ  554 (615)
T ss_pred             HHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH
Confidence            999999999999999988763211111      12222233445799999999999988743  544 456667767666


Q ss_pred             cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 043068          414 AKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKK  467 (526)
Q Consensus       414 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  467 (526)
                      . |++++|.++|++..+.... ...        ......+.+|.++..+..+..
T Consensus       555 ~-g~~~eAi~~~e~A~~l~~~-~~e--------~~~a~~~~~a~~~~~~~~~~~  598 (615)
T TIGR00990       555 Q-GDVDEALKLFERAAELART-EGE--------LVQAISYAEATRTQIQVQEDY  598 (615)
T ss_pred             c-cCHHHHHHHHHHHHHHhcc-HHH--------HHHHHHHHHHHHHHHHHHHHh
Confidence            5 9999999999999875322 111        122234556666666665553

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.86  E-value=9.8e-17  Score=166.02  Aligned_cols=405  Identities=9%  Similarity=0.045  Sum_probs=290.2

Q ss_pred             HHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHc
Q 043068           59 TKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDF---FISKLIKAYGD  135 (526)
Q Consensus        59 ~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~  135 (526)
                      .-+..++|+++.|+..|+.+++..|...     ...+ .++.++...|+.++|...+++...+++.   ....++..|..
T Consensus        41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~-----~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~  114 (822)
T PRK14574         41 LIIRARAGDTAPVLDYLQEESKAGPLQS-----GQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN  114 (822)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhhCccch-----hhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence            3355678999999999999998776421     1122 6777888889999999999988755433   33344668888


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHH
Q 043068          136 RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKK  215 (526)
Q Consensus       136 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  215 (526)
                      .|++++|+++|+++.+..+ .+...+..++..+...++.++|++.++++....   |+...+..++..+...++..+|++
T Consensus       115 ~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d---p~~~~~l~layL~~~~~~~~~AL~  190 (822)
T PRK14574        115 EKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERD---PTVQNYMTLSYLNRATDRNYDALQ  190 (822)
T ss_pred             cCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---cchHHHHHHHHHHHhcchHHHHHH
Confidence            9999999999999998875 346777788888999999999999999998764   455555555555555666666888


Q ss_pred             HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH------------------------------------------------
Q 043068          216 VFDVM-TVKP-NLLAYNTMINGFCKKGELEEA------------------------------------------------  245 (526)
Q Consensus       216 ~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A------------------------------------------------  245 (526)
                      .++++ ...| +...+..++.++.+.|-...|                                                
T Consensus       191 ~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a  270 (822)
T PRK14574        191 ASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA  270 (822)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence            88887 3334 344555555555554433333                                                


Q ss_pred             HHHHHHHHHc-CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHH
Q 043068          246 KKCMNEMMNR-GCRPNEL-TY----NAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYL  319 (526)
Q Consensus       246 ~~~~~~m~~~-g~~p~~~-~~----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  319 (526)
                      +.-++.+... +..|... .|    .-.+-++...|++.++++.|+.+...+.+....+-..+.++|...+++++|+.+|
T Consensus       271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~  350 (822)
T PRK14574        271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL  350 (822)
T ss_pred             HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            3333333331 1123211 11    2234567788999999999999998887667778889999999999999999999


Q ss_pred             HHHHHcCC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----------CCC--H-HHHHHHHHHHHHcC
Q 043068          320 RNVMEANM-----NPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGL-----------KPT--V-FSFNAVFRILVENG  380 (526)
Q Consensus       320 ~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~--~-~~~~~li~~~~~~g  380 (526)
                      +.+.....     .++......|.-+|...+++++|..+++++.+...           .|+  - ..+..++..+...|
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g  430 (822)
T PRK14574        351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN  430 (822)
T ss_pred             HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence            99876531     22444457788899999999999999999987311           122  1 23445567788899


Q ss_pred             CHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 043068          381 ELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIA  460 (526)
Q Consensus       381 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  460 (526)
                      +..+|++.++++.... +-|......+...+ +..|...+|++.++.+....+. +..+....+.++...|++++|..+.
T Consensus       431 dl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~-~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~  507 (822)
T PRK14574        431 DLPTAQKKLEDLSSTA-PANQNLRIALASIY-LARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLT  507 (822)
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            9999999999997743 23444444555444 4459999999999877765433 6778888888999999999999999


Q ss_pred             HHHHHcCCCccchhhh
Q 043068          461 HEMVTKKGRLLKLKNF  476 (526)
Q Consensus       461 ~~m~~~~~~~~~~~~~  476 (526)
                      +.+.+..|+.+...++
T Consensus       508 ~~l~~~~Pe~~~~~~l  523 (822)
T PRK14574        508 DDVISRSPEDIPSQEL  523 (822)
T ss_pred             HHHHhhCCCchhHHHH
Confidence            9999999988765544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.85  E-value=1.2e-16  Score=168.56  Aligned_cols=370  Identities=11%  Similarity=0.046  Sum_probs=277.5

Q ss_pred             hHHHHHHHHHhCCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 043068           94 CYTAITDVLLSHSLISIAASLLKNSNK---LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVR  170 (526)
Q Consensus        94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~  170 (526)
                      -..-.+.+....|+.++|..++.+...   .+...+..+...+...|++++|.++|++.....+ .+...+..+...+..
T Consensus        17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~   95 (765)
T PRK10049         17 QIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILTLAD   95 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence            345566778889999999999987653   3445688999999999999999999999987764 456777888899999


Q ss_pred             cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 043068          171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKC  248 (526)
Q Consensus       171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~  248 (526)
                      .|++++|+..++++++..  |.+.. +..+..++...|+.++|...++++ ...| +...+..+...+...|..++|++.
T Consensus        96 ~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~  172 (765)
T PRK10049         96 AGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGA  172 (765)
T ss_pred             CCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence            999999999999999886  77788 999999999999999999999998 3344 555667788888899999999999


Q ss_pred             HHHHHHcCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-CCCCCHH-hHH----HHHHHHHH
Q 043068          249 MNEMMNRGCRPNE------LTYNAMIYGLC-----INGRV---DEAKMLMAKMRLN-GFKDNVS-THK----SMLKGLCV  308 (526)
Q Consensus       249 ~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~li~~~~~  308 (526)
                      ++....   .|+.      .....++....     ..+++   ++|+..++.+.+. ...|+.. .+.    ..+..+..
T Consensus       173 l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~  249 (765)
T PRK10049        173 IDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA  249 (765)
T ss_pred             HHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence            986654   2221      11222222222     22334   7788888888754 1223221 111    11345567


Q ss_pred             cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHH
Q 043068          309 VGKFDQAVGYLRNVMEANMN-PDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKP---TVFSFNAVFRILVENGELDR  384 (526)
Q Consensus       309 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~  384 (526)
                      .|++++|+..|+.+.+.+.. |+. .-..+...|...|++++|+..|+++.+.....   .......+..++.+.|++++
T Consensus       250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e  328 (765)
T PRK10049        250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG  328 (765)
T ss_pred             hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence            79999999999999987642 332 22235778999999999999999987653111   13456677778899999999


Q ss_pred             HHHHHHHcccCC-----------CCcCH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043068          385 AILLLKQMPQMD-----------CLPNF---VSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEE  450 (526)
Q Consensus       385 a~~~~~~~~~~~-----------~~p~~---~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  450 (526)
                      |.++++.+.+..           -.|+.   ..+..+...+.. .|+.++|++.+++++...+. +...+..+...+...
T Consensus       329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~-~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~  406 (765)
T PRK10049        329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY-SNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQAR  406 (765)
T ss_pred             HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence            999999988642           11232   123334444444 59999999999999987544 788999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCccch
Q 043068          451 GNVENVMQIAHEMVTKKGRLLKL  473 (526)
Q Consensus       451 g~~~~a~~~~~~m~~~~~~~~~~  473 (526)
                      |++++|++.+++.++..|+.+..
T Consensus       407 g~~~~A~~~l~~al~l~Pd~~~l  429 (765)
T PRK10049        407 GWPRAAENELKKAEVLEPRNINL  429 (765)
T ss_pred             CCHHHHHHHHHHHHhhCCCChHH
Confidence            99999999999999999866653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.83  E-value=2.6e-15  Score=158.70  Aligned_cols=175  Identities=10%  Similarity=0.046  Sum_probs=105.4

Q ss_pred             cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCH--HHHHHHHHHHHcCCCHHHH
Q 043068           65 QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSD--FFISKLIKAYGDRGNVKAA  142 (526)
Q Consensus        65 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A  142 (526)
                      .|++++|+..|+.+++..|+.      ..++..++..+.+.|++++|+..+++....++  ..+..++..+   +++++|
T Consensus        57 ~Gd~~~A~~~l~~Al~~dP~n------~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA  127 (987)
T PRK09782         57 NNDEATAIREFEYIHQQVPDN------IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKS  127 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhH
Confidence            599999999999999887743      45689999999999999999999998765444  2333322222   777788


Q ss_pred             HHHHHHHHhcCCCC--------------------------------------ChhhHHH-HHHHHHhcCChhHHHHHHHH
Q 043068          143 IFWFHQAKQIENGA--------------------------------------CLYSYNS-LLGVLVRVNSIKLAEEFFHQ  183 (526)
Q Consensus       143 ~~~~~~~~~~~~~~--------------------------------------~~~~~~~-li~~~~~~g~~~~A~~~~~~  183 (526)
                      ..+++++....+..                                      +..+... +...|.+.|++++|++++.+
T Consensus       128 ~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~  207 (987)
T PRK09782        128 VTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE  207 (987)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            88887776655321                                      1111122 25566677788888888888


Q ss_pred             HHHcCCCCCCHHHHHHHHHHHHH-cCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043068          184 IVKENVVPPDVSTYTTMIRGYCK-MGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEM  252 (526)
Q Consensus       184 ~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  252 (526)
                      +.+.+  +.+..-...|..+|.. .++ +++..+++. ..+.+...+..++..|.+.|+.++|.++++++
T Consensus       208 L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~-~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~  273 (987)
T PRK09782        208 ARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ-GIFTDPQSRITYATALAYRGEKARLQHYLIEN  273 (987)
T ss_pred             HHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch-hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            77765  3344434444444443 233 333333322 11223444444445555555555555444443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.82  E-value=2.9e-15  Score=158.43  Aligned_cols=399  Identities=13%  Similarity=0.063  Sum_probs=254.3

Q ss_pred             HHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHh-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCC
Q 043068           59 TKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLS-HSLISIAASLLKNSNKLSDFFISKLIKAYGDRG  137 (526)
Q Consensus        59 ~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g  137 (526)
                      .+++...+++++|+..+..+.+..|..      ......+..++.. .++ +.+..++++....++..+..++..|.+.|
T Consensus       189 ~rlY~~l~dw~~Ai~lL~~L~k~~pl~------~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G  261 (987)
T PRK09782        189 LQRAIYLKQWSQADTLYNEARQQNTLS------AAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRG  261 (987)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCC
Confidence            566777899999999999998876533      2235566677776 355 77777766443456777888888888899


Q ss_pred             CHHHHHHHHHHHHhcCCC-CChhhH------------------------------HHHHHHHHhcCChhHHH--------
Q 043068          138 NVKAAIFWFHQAKQIENG-ACLYSY------------------------------NSLLGVLVRVNSIKLAE--------  178 (526)
Q Consensus       138 ~~~~A~~~~~~~~~~~~~-~~~~~~------------------------------~~li~~~~~~g~~~~A~--------  178 (526)
                      +.++|.+++.++...... |...+|                              -.++..+.+.++++.++        
T Consensus       262 ~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (987)
T PRK09782        262 EKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPA  341 (987)
T ss_pred             CHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCc
Confidence            998888888776544221 111111                              11123333334333333        


Q ss_pred             -------------------------------------------------------HHHHHHHH-cCCCCCCHHHHHHHHH
Q 043068          179 -------------------------------------------------------EFFHQIVK-ENVVPPDVSTYTTMIR  202 (526)
Q Consensus       179 -------------------------------------------------------~~~~~~~~-~~~~~~~~~~~~~li~  202 (526)
                                                                             ++|++... .+....+.....-++.
T Consensus       342 ~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~  421 (987)
T PRK09782        342 NEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLAS  421 (987)
T ss_pred             chHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHH
Confidence                                                                   22222222 0000112222234444


Q ss_pred             HHHHcCC---hhhHHHH------------HH-------------hC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043068          203 GYCKMGM---IENAKKV------------FD-------------VM-TV-KP--NLLAYNTMINGFCKKGELEEAKKCMN  250 (526)
Q Consensus       203 ~~~~~g~---~~~A~~~------------~~-------------~~-~~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~  250 (526)
                      .|.+.+.   ..++..+            ..             .. +. ++  +...|..+..++.. ++.++|+..|.
T Consensus       422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~  500 (987)
T PRK09782        422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWL  500 (987)
T ss_pred             HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHH
Confidence            4444433   1112111            00             00 11 22  44556666666655 67777888777


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 043068          251 EMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPD  330 (526)
Q Consensus       251 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~  330 (526)
                      +....  .|+......+...+...|++++|...|+++...  +|+...+..+...+.+.|++++|...+++..+.++. +
T Consensus       501 ~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~  575 (987)
T PRK09782        501 QAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-D  575 (987)
T ss_pred             HHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-c
Confidence            77665  355544444455556788888888888887543  444455666777888888888888888888876532 3


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHH-HHH
Q 043068          331 VKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNT-IIC  409 (526)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-ll~  409 (526)
                      ...+..+.......|++++|+..+++..+.  .|+...+..+..++.+.|++++|+..+++..+.  .|+...+.. +-.
T Consensus       576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~  651 (987)
T PRK09782        576 NALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGY  651 (987)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            333333344444568899999988888876  567778888888888899999999999888874  365444444 443


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhh
Q 043068          410 GLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNF  476 (526)
Q Consensus       410 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  476 (526)
                      .+.. .|+.++|+..+++.++..+. +...+..+..++...|++++|+..+++.++..++...+...
T Consensus       652 aL~~-~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~  716 (987)
T PRK09782        652 ALWD-SGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPL  716 (987)
T ss_pred             HHHH-CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhh
Confidence            4444 48899999999988886554 77888888889999999999999999998888866554433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.82  E-value=2.5e-15  Score=155.72  Aligned_cols=374  Identities=12%  Similarity=0.067  Sum_probs=276.8

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 043068           96 TAITDVLLSHSLISIAASLLKNSNKLSDF---FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVN  172 (526)
Q Consensus        96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  172 (526)
                      ..-+-...+.|+++.|...|++....++.   ....++..+...|+.++|+..+++...... ........+...+...|
T Consensus        38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n-~~~~~llalA~ly~~~g  116 (822)
T PRK14574         38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMN-ISSRGLASAARAYRNEK  116 (822)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcC
Confidence            33455678899999999999987643332   233888888999999999999999872211 22333333466888899


Q ss_pred             ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043068          173 SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAYNTMINGFCKKGELEEAKKCMNE  251 (526)
Q Consensus       173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  251 (526)
                      ++++|+++|+++.+..  |.+...+..++..+...++.++|++.++++ ...|+...+..++..+...++..+|++.+++
T Consensus       117 dyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ek  194 (822)
T PRK14574        117 RWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSE  194 (822)
T ss_pred             CHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            9999999999999987  778888889999999999999999999998 5667766775555555556777679999999


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH------------------------------------------------
Q 043068          252 MMNRGCRPNELTYNAMIYGLCINGRVDEAKML------------------------------------------------  283 (526)
Q Consensus       252 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~------------------------------------------------  283 (526)
                      +.+.... +...+..++.+..+.|-...|+++                                                
T Consensus       195 ll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~  273 (822)
T PRK14574        195 AVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD  273 (822)
T ss_pred             HHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence            9998432 455555566665555544333333                                                


Q ss_pred             HHHHHHc-CCCCCH-H----hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068          284 MAKMRLN-GFKDNV-S----THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEM  357 (526)
Q Consensus       284 ~~~~~~~-~~~~~~-~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  357 (526)
                      ++.+... +-.|.. .    +..-.+-++...|++.++++.|+.+...+.+.-..+-..+.++|...+++++|+.+++.+
T Consensus       274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~  353 (822)
T PRK14574        274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL  353 (822)
T ss_pred             HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            2222221 111221 1    112345567788999999999999998876544557788999999999999999999999


Q ss_pred             HHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCC-------------CCcCHHHHHHHHHHHHhcCCCHH
Q 043068          358 RARG-----LKPTVFSFNAVFRILVENGELDRAILLLKQMPQMD-------------CLPNFVSYNTIICGLCMAKGRMQ  419 (526)
Q Consensus       358 ~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------------~~p~~~~~~~ll~~~~~~~g~~~  419 (526)
                      ....     ..++......|..++...+++++|..+++++.+..             ..||-..+..+...+....|++.
T Consensus       354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~  433 (822)
T PRK14574        354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP  433 (822)
T ss_pred             hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence            6642     12234446789999999999999999999998721             12344444444433333359999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchh
Q 043068          420 DVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLK  474 (526)
Q Consensus       420 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  474 (526)
                      +|++.++++....+. |..+...+...+...|.+.+|++.++......++.....
T Consensus       434 ~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~  487 (822)
T PRK14574        434 TAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILE  487 (822)
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHH
Confidence            999999999987655 899999999999999999999999999888887655433

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.75  E-value=1.4e-13  Score=137.24  Aligned_cols=415  Identities=10%  Similarity=0.066  Sum_probs=264.2

Q ss_pred             HHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHH
Q 043068           58 VTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYG  134 (526)
Q Consensus        58 l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~  134 (526)
                      +.+.+..+|+++.|..+|..+.+..++.  +..   .+.-++..+.+.|.++.+...|++..   +.+..+...|...|+
T Consensus       313 ~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--~~l---~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya  387 (1018)
T KOG2002|consen  313 LGRSYHAQGDFEKAFKYYMESLKADNDN--FVL---PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA  387 (1018)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHccCCCC--ccc---cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence            3445555667777777776666654432  111   24456666666777776666666543   222334445555555


Q ss_pred             cCC----CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH----HcCCCCCCHHHHHHHHHHHHH
Q 043068          135 DRG----NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIV----KENVVPPDVSTYTTMIRGYCK  206 (526)
Q Consensus       135 ~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~li~~~~~  206 (526)
                      ..+    ..+.|..++.+.....+ .|...|-.+..++...+- ..++.+|....    ..+ -++-....|.+...+..
T Consensus       388 ~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~-~~ip~E~LNNvaslhf~  464 (1018)
T KOG2002|consen  388 HSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKG-KQIPPEVLNNVASLHFR  464 (1018)
T ss_pred             hhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcC-CCCCHHHHHhHHHHHHH
Confidence            443    34555666665554442 455566555555544332 22244444332    222 23455667777777777


Q ss_pred             cCChhhHHHHHHhC-C-----C------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH
Q 043068          207 MGMIENAKKVFDVM-T-----V------KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN-ELTYNAMIYGLCI  273 (526)
Q Consensus       207 ~g~~~~A~~~~~~~-~-----~------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~  273 (526)
                      .|++.+|...|... +     .      .+++.+-..+...+-..++.+.|.++|......  .|. ...|-.++.....
T Consensus       465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~  542 (1018)
T KOG2002|consen  465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARD  542 (1018)
T ss_pred             hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHh
Confidence            77777777777654 1     1      122223344555566666777777777777665  333 2233334333334


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh---------
Q 043068          274 NGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA-NMNPDVKSYEVVINGFCK---------  343 (526)
Q Consensus       274 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~---------  343 (526)
                      .+...+|..++....... ..++..++.+...+.+..++..|.+-|+.+.+. ...+|..+...|.+.|..         
T Consensus       543 k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~  621 (1018)
T KOG2002|consen  543 KNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP  621 (1018)
T ss_pred             ccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence            566777777777776544 566667777777888888888888766666553 223566666666665543         


Q ss_pred             ---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHH
Q 043068          344 ---IGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQD  420 (526)
Q Consensus       344 ---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~  420 (526)
                         .+..++|+++|.+.++.. +-|...-|.+...++..|++.+|..+|.+..+... ....+|-.+...|... |++..
T Consensus       622 ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~-~qy~~  698 (1018)
T KOG2002|consen  622 EKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQ-GQYRL  698 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHH-HHHHH
Confidence               245678999999888763 33677778888899999999999999999987542 2344566666666655 99999


Q ss_pred             HHHHHHHHHHC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHHHH
Q 043068          421 VEDLVDRMIRS-GHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLL  486 (526)
Q Consensus       421 a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~  486 (526)
                      |.++|+...+. ...-+..+...|.+++.+.|++.+|.+.+...+...+..+...-.++.+......
T Consensus       699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~  765 (1018)
T KOG2002|consen  699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAE  765 (1018)
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHH
Confidence            99999987665 3445788999999999999999999999999999999877665555554444433

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=1.7e-13  Score=124.41  Aligned_cols=347  Identities=13%  Similarity=0.202  Sum_probs=252.5

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC
Q 043068          114 LLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD  193 (526)
Q Consensus       114 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~  193 (526)
                      ++-+..+..+.++..+|.+.++-...+.|.++|++......+.+..+||.+|.+-.-.    ...++..+|+... +.||
T Consensus       198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqk-m~Pn  272 (625)
T KOG4422|consen  198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQK-MTPN  272 (625)
T ss_pred             HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhh-cCCc
Confidence            4444556677899999999999999999999999998888888999999998765433    2268889998877 7999


Q ss_pred             HHHHHHHHHHHHHcCChhhHHH----HHHhC---CCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----cCCCC--
Q 043068          194 VSTYTTMIRGYCKMGMIENAKK----VFDVM---TVKPNLLAYNTMINGFCKKGELEE-AKKCMNEMMN----RGCRP--  259 (526)
Q Consensus       194 ~~~~~~li~~~~~~g~~~~A~~----~~~~~---~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p--  259 (526)
                      ..|+|+++.+..+.|+++.|.+    ++.+|   |+.|...+|..+|..+++.++..+ |..++.++..    +.++|  
T Consensus       273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~  352 (625)
T KOG4422|consen  273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT  352 (625)
T ss_pred             hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence            9999999999999998877654    44444   899999999999999999887644 4445555443    22222  


Q ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC---HHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 043068          260 --NELTYNAMIYGLCINGRVDEAKMLMAKMRLN----GFKDN---VSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPD  330 (526)
Q Consensus       260 --~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~  330 (526)
                        |..-|...|..|....+.+.|.++..-+...    -+.|+   ..-|..+....|+....+.-...|+.|+..-.-|+
T Consensus       353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~  432 (625)
T KOG4422|consen  353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH  432 (625)
T ss_pred             CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence              4556788889999999999999887766432    12232   23566788888999999999999999998888889


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CH--------H-----HHHHHH-------
Q 043068          331 VKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENG-EL--------D-----RAILLL-------  389 (526)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~--------~-----~a~~~~-------  389 (526)
                      ..+...++++....|.++-.-+++.+++..|...+...-.-++..+++.. +.        .     -|..++       
T Consensus       433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~  512 (625)
T KOG4422|consen  433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQP  512 (625)
T ss_pred             chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            99999999999999999999999999998876655555555555555443 11        0     111111       


Q ss_pred             HHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043068          390 KQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGH----NLDFTMYSCLLKGYCEEGNVENVMQIAHEMVT  465 (526)
Q Consensus       390 ~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  465 (526)
                      .++.+..+.  ....+...-.+.+. |+.++|.+++..+.+.+-    .|......-+++.-.+..+...|..+++-|.+
T Consensus       513 ~R~r~~~~~--~t~l~~ia~Ll~R~-G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~  589 (625)
T KOG4422|consen  513 IRQRAQDWP--ATSLNCIAILLLRA-GRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA  589 (625)
T ss_pred             HHHHhccCC--hhHHHHHHHHHHHc-chHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            122233333  33444444445565 899999999888865542    22333344566666777888888888888877


Q ss_pred             cCC
Q 043068          466 KKG  468 (526)
Q Consensus       466 ~~~  468 (526)
                      .+.
T Consensus       590 ~n~  592 (625)
T KOG4422|consen  590 FNL  592 (625)
T ss_pred             cCc
Confidence            664

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.70  E-value=3.1e-14  Score=124.76  Aligned_cols=314  Identities=13%  Similarity=0.161  Sum_probs=231.2

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHH------HHHHHHHHHHhcCCHHH
Q 043068          171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLL------AYNTMINGFCKKGELEE  244 (526)
Q Consensus       171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~------~~~~li~~~~~~g~~~~  244 (526)
                      .++.++|.++|-+|.+..  +.+..+.-+|.+.|-+.|.+|.|+++.+.+-..||..      ....|..-|...|-+|.
T Consensus        48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR  125 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR  125 (389)
T ss_pred             hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence            577888999999988876  6777888888899999999999999888874455532      34567777888999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHHcCCHHHHHHHHH
Q 043068          245 AKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNV----STHKSMLKGLCVVGKFDQAVGYLR  320 (526)
Q Consensus       245 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~  320 (526)
                      |+++|..+.+.|.- -......|+..|-...+|++|++.-+++.+.+-.+..    ..|.-+...+....+++.|..++.
T Consensus       126 AE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~  204 (389)
T COG2956         126 AEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK  204 (389)
T ss_pred             HHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            99999999876432 4566778899999999999999999988877644432    244555666666788999999999


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC
Q 043068          321 NVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN  400 (526)
Q Consensus       321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~  400 (526)
                      +..+.+.+ .+..-..+.+.+...|+++.|++.++...+.+..--..+...|..+|.+.|+.++....+..+.+..  +.
T Consensus       205 kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g  281 (389)
T COG2956         205 KALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TG  281 (389)
T ss_pred             HHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CC
Confidence            99887655 5566667788899999999999999999988544445678889999999999999999999988743  33


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHcCCCccchhhhH
Q 043068          401 FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYC---EEGNVENVMQIAHEMVTKKGRLLKLKNFL  477 (526)
Q Consensus       401 ~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  477 (526)
                      ...-..+-...... .-.+.|..++.+-+.  -.|+...+..|+..-.   ..|...+...++++|+....+......+-
T Consensus       282 ~~~~l~l~~lie~~-~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~  358 (389)
T COG2956         282 ADAELMLADLIELQ-EGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQ  358 (389)
T ss_pred             ccHHHHHHHHHHHh-hChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceec
Confidence            33333333332333 345566666555554  3678888888888654   35668888888888887665554444444


Q ss_pred             HHHHHHHHHHHHHhcC
Q 043068          478 TRVVDALLLMWIVTGG  493 (526)
Q Consensus       478 ~~~~~~~~~~~~~~g~  493 (526)
                      .|-..+....|..++|
T Consensus       359 ~CGF~a~~l~W~CPsC  374 (389)
T COG2956         359 NCGFTAHTLYWHCPSC  374 (389)
T ss_pred             ccCCcceeeeeeCCCc
Confidence            4445555566666665

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.69  E-value=3.7e-13  Score=133.26  Aligned_cols=132  Identities=19%  Similarity=0.275  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 043068          331 VKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICG  410 (526)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~  410 (526)
                      ...|.-+..+|...|++.+|+.+|..+...-..-+...|-.+..+|...|..++|++.|+..+.  ..|+..--..-+..
T Consensus       414 ~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Las  491 (895)
T KOG2076|consen  414 VDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLAS  491 (895)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHH
Confidence            3345555555555555555555555554442222344555555555555555555555555554  23443333333333


Q ss_pred             HHhcCCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043068          411 LCMAKGRMQDVEDLVDRMI--------RSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMV  464 (526)
Q Consensus       411 ~~~~~g~~~~a~~~~~~~~--------~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  464 (526)
                      +....|+.++|.+.++.+.        ..+..|+..........+.+.|+.++-+.....|+
T Consensus       492 l~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv  553 (895)
T KOG2076|consen  492 LYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV  553 (895)
T ss_pred             HHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3333455555555555432        11223333344444444555555555444444443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.68  E-value=3.7e-12  Score=127.23  Aligned_cols=395  Identities=13%  Similarity=0.113  Sum_probs=267.2

Q ss_pred             hhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHH----HHHHHHHHHHcCCCHHHHH
Q 043068           68 PYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDF----FISKLIKAYGDRGNVKAAI  143 (526)
Q Consensus        68 ~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~  143 (526)
                      .+.|.+-|..+.++.|..  .    ..+.--+.+....+++..|..+|++....++.    ..-.+..++.+.|+.+.|+
T Consensus       146 ~~~A~a~F~~Vl~~sp~N--i----l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~  219 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDN--I----LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKAL  219 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcc--h----HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHH
Confidence            578888899888776532  1    11222334445567888888888874432222    2234456677888999999


Q ss_pred             HHHHHHHhcCCCCChhhHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068          144 FWFHQAKQIENGACLYSYNSLLGVLVRV---NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM  220 (526)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  220 (526)
                      ..|.++.+.++ .++.++-.|...-...   ..+..+..++...-..+  +.|+...+.|.+.|.-.|++..++++...+
T Consensus       220 ~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~a  296 (1018)
T KOG2002|consen  220 LAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHA  296 (1018)
T ss_pred             HHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence            99998888774 3444444443333322   34566777777777666  667788888888888899999888888776


Q ss_pred             C----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 043068          221 T----VK-PNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE--LTYNAMIYGLCINGRVDEAKMLMAKMRLNGFK  293 (526)
Q Consensus       221 ~----~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  293 (526)
                      -    .. --...|..+..+|-..|++++|...|.+..+.  .++.  ..+.-+...|.+.|+++.+...|+.+.+.. +
T Consensus       297 i~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p  373 (1018)
T KOG2002|consen  297 IKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-P  373 (1018)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-c
Confidence            1    11 12345778888888899999999998777765  3443  344567788888999999999999887764 6


Q ss_pred             CCHHhHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCC
Q 043068          294 DNVSTHKSMLKGLCVVG----KFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMR----ARGLKPT  365 (526)
Q Consensus       294 ~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~p~  365 (526)
                      .+..+..++...|...+    ..+.|..++.+..+..+. |...|..+...+....-+ .++..|....    ..+..+.
T Consensus       374 ~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip  451 (1018)
T KOG2002|consen  374 NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIP  451 (1018)
T ss_pred             chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCC
Confidence            66777777877777765    567777777777776533 777888777777654443 3366665543    3454566


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHcccC---CCCcCH-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH
Q 043068          366 VFSFNAVFRILVENGELDRAILLLKQMPQM---DCLPNF-----VSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDF  437 (526)
Q Consensus       366 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~-----~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~  437 (526)
                      ....|.+...+...|++++|...|......   ...+|.     .|..-.+..+....++.+.|.++|...++..  |..
T Consensus       452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~Y  529 (1018)
T KOG2002|consen  452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGY  529 (1018)
T ss_pred             HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chh
Confidence            778888888888889999998888877653   122333     1222223333344578888888888888753  333


Q ss_pred             -HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHH
Q 043068          438 -TMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLT  478 (526)
Q Consensus       438 -~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~  478 (526)
                       ..|--++......++..+|...++..+..+...|++..++.
T Consensus       530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G  571 (1018)
T KOG2002|consen  530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLG  571 (1018)
T ss_pred             HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHH
Confidence             23444443334457788888888888888888888777764

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.68  E-value=6.3e-13  Score=121.60  Aligned_cols=200  Identities=12%  Similarity=0.121  Sum_probs=141.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043068          274 NGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISL  353 (526)
Q Consensus       274 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  353 (526)
                      .|++++|.+.|++.....- .-+...-.+.-.+-..|+.++|++.|-++...- ..+......+.+.|....+...|+++
T Consensus       503 ngd~dka~~~ykeal~nda-sc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~  580 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALNNDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIEL  580 (840)
T ss_pred             cCcHHHHHHHHHHHHcCch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence            4677777777777764331 112222233445666778888888776655431 22566667778888888888888888


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC
Q 043068          354 LKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGH  433 (526)
Q Consensus       354 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~  433 (526)
                      +-+.... ++-|+.....|...|-+.|+-.+|.+.+-+--.. ++-+..+...|. +|+....-++++..+|++.--  +
T Consensus       581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~-ayyidtqf~ekai~y~ekaal--i  655 (840)
T KOG2003|consen  581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLA-AYYIDTQFSEKAINYFEKAAL--I  655 (840)
T ss_pred             HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHH-HHHHhhHHHHHHHHHHHHHHh--c
Confidence            8776654 4557788899999999999999998876554431 334455555555 444444788999999998764  7


Q ss_pred             CCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCCccchhhhHHHH
Q 043068          434 NLDFTMYSCLLKGY-CEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRV  480 (526)
Q Consensus       434 ~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~  480 (526)
                      +|+..-|..++..| .+.|++++|.++++....+.+...+-..|+-.+
T Consensus       656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri  703 (840)
T KOG2003|consen  656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI  703 (840)
T ss_pred             CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            89999999887765 568999999999999999888776655555433

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=4.8e-12  Score=116.62  Aligned_cols=394  Identities=13%  Similarity=0.116  Sum_probs=281.7

Q ss_pred             cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHcCCCHHH
Q 043068           65 QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKL---SDFFISKLIKAYGDRGNVKA  141 (526)
Q Consensus        65 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~  141 (526)
                      +++.+.|..+|++++.-.      ..+...|...++.-.+++...-|+.++++....   -+..|...+.+=-..|++..
T Consensus        86 q~e~~RARSv~ERALdvd------~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~g  159 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVD------YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAG  159 (677)
T ss_pred             HHHHHHHHHHHHHHHhcc------cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHH
Confidence            678889999999998532      234456889999999999999999999987632   23466666666677899999


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-
Q 043068          142 AIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-  220 (526)
Q Consensus       142 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-  220 (526)
                      |.++|++...-.  |+..+|++.|+.-.+-+..+.|..+|+..+-.   .|++.+|.-.++.-.+.|++..|.++|+.. 
T Consensus       160 aRqiferW~~w~--P~eqaW~sfI~fElRykeieraR~IYerfV~~---HP~v~~wikyarFE~k~g~~~~aR~VyerAi  234 (677)
T KOG1915|consen  160 ARQIFERWMEWE--PDEQAWLSFIKFELRYKEIERARSIYERFVLV---HPKVSNWIKYARFEEKHGNVALARSVYERAI  234 (677)
T ss_pred             HHHHHHHHHcCC--CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---cccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            999999987654  99999999999999999999999999999865   589999999999999999999999998876 


Q ss_pred             ---CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------------------------------------
Q 043068          221 ---TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRG----------------------------------------  256 (526)
Q Consensus       221 ---~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----------------------------------------  256 (526)
                         +. .-+...+.+....-.++..++.|.-+|+-.++.=                                        
T Consensus       235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~  314 (677)
T KOG1915|consen  235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE  314 (677)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence               21 1122233443333334445555555554433320                                        


Q ss_pred             ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HhHHHHH-----HHH---HHcCCHHHHHHHHHHHH
Q 043068          257 ---CRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNV--STHKSML-----KGL---CVVGKFDQAVGYLRNVM  323 (526)
Q Consensus       257 ---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li-----~~~---~~~g~~~~A~~~~~~~~  323 (526)
                         -+-|-.+|--.++.-...|+.+...++|++++..- +|-.  ..|...|     -++   ....+++.+.++|+..+
T Consensus       315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l  393 (677)
T KOG1915|consen  315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL  393 (677)
T ss_pred             HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence               01133444445555556677888888888777542 3421  1122211     111   23567778888887777


Q ss_pred             HcCCCCCHHHH----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCc
Q 043068          324 EANMNPDVKSY----EVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLP  399 (526)
Q Consensus       324 ~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p  399 (526)
                      +. ++....||    ......-.++.++..|.+++...+  |..|-..+|...|..=.+.+++|.+..++++.++.+  |
T Consensus       394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--P  468 (677)
T KOG1915|consen  394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--P  468 (677)
T ss_pred             hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--h
Confidence            63 22233333    334444557788889999888766  558888999999999999999999999999999854  5


Q ss_pred             C-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhh
Q 043068          400 N-FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGH-NLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNF  476 (526)
Q Consensus       400 ~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  476 (526)
                      . ..+|.... .+-...|+.+.|..+|+-+++... ......|.+.|+-=...|.+++|..+++++++.....+.+..|
T Consensus       469 e~c~~W~kya-ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisF  546 (677)
T KOG1915|consen  469 ENCYAWSKYA-ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISF  546 (677)
T ss_pred             HhhHHHHHHH-HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhH
Confidence            4 44454444 334456999999999999987632 2234577788887788999999999999999998766544444

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.67  E-value=4.2e-13  Score=130.81  Aligned_cols=284  Identities=10%  Similarity=0.043  Sum_probs=176.6

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHHH--HHHHHHHhcCCHHHHHH
Q 043068          171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAYN--TMINGFCKKGELEEAKK  247 (526)
Q Consensus       171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~--~li~~~~~~g~~~~A~~  247 (526)
                      .|+++.|++......+..  +.....|........+.|+++.|.+.+.++ ...|+...+.  .....+...|++++|.+
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~  174 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH  174 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence            477777776666554432  111222333344446677777777777766 3344443222  23456667777777777


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-------hHHHHHHHHHHcCCHHHHHHHHH
Q 043068          248 CMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVS-------THKSMLKGLCVVGKFDQAVGYLR  320 (526)
Q Consensus       248 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~  320 (526)
                      .++++.+.... +...+..+...|.+.|++++|.+++..+.+.+..++..       +|..++.......+.+...++++
T Consensus       175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~  253 (398)
T PRK10747        175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK  253 (398)
T ss_pred             HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            77777766433 45666667777777777777777777777665332221       22223333333444555555665


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC
Q 043068          321 NVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN  400 (526)
Q Consensus       321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~  400 (526)
                      .+.+.- +.+......+...+...|+.++|.+++++..+.  .|+...  .++.+....++.+++++..+...+..  |+
T Consensus       254 ~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~--P~  326 (398)
T PRK10747        254 NQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH--GD  326 (398)
T ss_pred             hCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC--CC
Confidence            554432 336667777888888888888888888877764  444421  22334445588888888888877643  66


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043068          401 FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTK  466 (526)
Q Consensus       401 ~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  466 (526)
                      .......+..+|...|++++|.+.|+.+.+  ..|+...+..+..++.+.|+.++|.+++++-+..
T Consensus       327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        327 TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            555444444444555888888888888886  4577777778888888888888888888876553

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.66  E-value=3.2e-13  Score=123.50  Aligned_cols=208  Identities=15%  Similarity=0.143  Sum_probs=170.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHH
Q 043068          239 KGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGY  318 (526)
Q Consensus       239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  318 (526)
                      .|++++|.+.|++.+...-.-....|+. .-.+-..|++++|++.|-++... +..+..+...+.+.|-...+..+|+++
T Consensus       503 ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~  580 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL  580 (840)
T ss_pred             cCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence            6889999999999887632222233333 23567889999999999887543 245677888899999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCC
Q 043068          319 LRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCL  398 (526)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  398 (526)
                      +.+.... ++.|......|...|-+.|+-..|.+.+-+--+. ++-+..+...|...|....-+++++.+|++..-  ++
T Consensus       581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq  656 (840)
T KOG2003|consen  581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ  656 (840)
T ss_pred             HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence            9887765 4458888999999999999999999987765443 455788889999999999999999999998776  67


Q ss_pred             cCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 043068          399 PNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNV  453 (526)
Q Consensus       399 p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  453 (526)
                      |+..-|..++..+.+..|++.+|.++++....+ ++-|.....-|++.+...|-.
T Consensus       657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~  710 (840)
T KOG2003|consen  657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK  710 (840)
T ss_pred             ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence            999999999999888899999999999998775 666999999999998887753

>TIGR00540 hemY_coli hemY protein

Probab=99.66  E-value=6.3e-13  Score=130.34  Aligned_cols=288  Identities=10%  Similarity=0.049  Sum_probs=191.4

Q ss_pred             HhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCH--HHHHHHHHHHHhcCCHHHH
Q 043068          169 VRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNL--LAYNTMINGFCKKGELEEA  245 (526)
Q Consensus       169 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~~li~~~~~~g~~~~A  245 (526)
                      ...|+++.|.+.+.+..+..  +.....+-....++.+.|+.+.|.+.+++. ...|+.  ...-.....+...|+++.|
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence            34678888888887776653  333445555567777778888888888775 223443  2333356777778888888


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhH-HHHHHHH---HHcCCHHHHHHHHHH
Q 043068          246 KKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTH-KSMLKGL---CVVGKFDQAVGYLRN  321 (526)
Q Consensus       246 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~---~~~g~~~~A~~~~~~  321 (526)
                      ...++++.+.... +...+..+...+.+.|++++|.+.+..+.+.+.. +...+ ..-..++   ...+..+++.+.+..
T Consensus       173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~  250 (409)
T TIGR00540       173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN  250 (409)
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            8888888877533 5567777888888888888888888888877643 33222 1111111   223333333445555


Q ss_pred             HHHcCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHcccC
Q 043068          322 VMEANMN---PDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFS---FNAVFRILVENGELDRAILLLKQMPQM  395 (526)
Q Consensus       322 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~  395 (526)
                      +.+..+.   .+...+..++..+...|+.++|.+++++..+.  .||...   ...........++.+.+.+.++...+.
T Consensus       251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~  328 (409)
T TIGR00540       251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN  328 (409)
T ss_pred             HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence            5544321   37778888888999999999999999988876  344331   111122233457788888888887763


Q ss_pred             CCCcCHH--HHH-HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043068          396 DCLPNFV--SYN-TIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVT  465 (526)
Q Consensus       396 ~~~p~~~--~~~-~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  465 (526)
                        .|+..  .+. ++-..+.+ .|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+.
T Consensus       329 --~p~~~~~~ll~sLg~l~~~-~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       329 --VDDKPKCCINRALGQLLMK-HGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             --CCCChhHHHHHHHHHHHHH-cccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              35555  443 44444444 599999999999544444578888888999999999999999999987644

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.66  E-value=1.3e-12  Score=127.45  Aligned_cols=249  Identities=11%  Similarity=0.094  Sum_probs=116.7

Q ss_pred             HhcCChhHHHHHHHHHHHcCCCCCCHHHH--HHHHHHHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHH
Q 043068          169 VRVNSIKLAEEFFHQIVKENVVPPDVSTY--TTMIRGYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMINGFCKKGELEE  244 (526)
Q Consensus       169 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~  244 (526)
                      .+.|+++.|.+.+.++.+..   |+....  ......+...|+++.|.+.++++ .. +.+......+...|.+.|++++
T Consensus       129 ~~~g~~~~A~~~l~~A~~~~---~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~  205 (398)
T PRK10747        129 QQRGDEARANQHLERAAELA---DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS  205 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence            44555555555555554432   222111  12234445555555555555554 11 2234444455555555555555


Q ss_pred             HHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHH
Q 043068          245 AKKCMNEMMNRGCRPNE-------LTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVG  317 (526)
Q Consensus       245 A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  317 (526)
                      |.+++..+.+.+..++.       .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+
T Consensus       206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~  284 (398)
T PRK10747        206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ  284 (398)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            55555555554333211       12222333333333344444444443222 13445555555555566666666666


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCC
Q 043068          318 YLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDC  397 (526)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  397 (526)
                      ++++..+.  .++...  .++.+....++.+++++..+...+.. +-|...+..+...|.+.|++++|.+.|+.+.+  .
T Consensus       285 ~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~  357 (398)
T PRK10747        285 IILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--Q  357 (398)
T ss_pred             HHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence            55555553  222211  12222233455555666555555441 11333445555555666666666666666555  2


Q ss_pred             CcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043068          398 LPNFVSYNTIICGLCMAKGRMQDVEDLVDRMI  429 (526)
Q Consensus       398 ~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~  429 (526)
                      .|+...+..+...+... |+.++|.+++++.+
T Consensus       358 ~P~~~~~~~La~~~~~~-g~~~~A~~~~~~~l  388 (398)
T PRK10747        358 RPDAYDYAWLADALDRL-HKPEEAAAMRRDGL  388 (398)
T ss_pred             CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence            35555555555444333 56666666555554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=2.2e-12  Score=119.33  Aligned_cols=388  Identities=12%  Similarity=0.069  Sum_probs=260.9

Q ss_pred             HHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHcCC
Q 043068           61 VIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDF---FISKLIKAYGDRG  137 (526)
Q Consensus        61 ~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g  137 (526)
                      -+.+++.+++|+++++|++...|+...|      |.....+|...|+++++.+...+....+|.   .+..-..++-..|
T Consensus       124 ~~f~~kkY~eAIkyY~~AI~l~p~epiF------YsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg  197 (606)
T KOG0547|consen  124 KFFRNKKYDEAIKYYTQAIELCPDEPIF------YSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG  197 (606)
T ss_pred             hhhhcccHHHHHHHHHHHHhcCCCCchh------hhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence            3445788999999999999988874333      666777777789999999888888777765   3444556777788


Q ss_pred             CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-cC-CCCCCHHHHHHHHHHHHH---------
Q 043068          138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVK-EN-VVPPDVSTYTTMIRGYCK---------  206 (526)
Q Consensus       138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~~~li~~~~~---------  206 (526)
                      ++++|+.=..-..-.+.-.+..+--.+=+.+-     ..|.+..++-.+ .+ .+-|+.....+....+..         
T Consensus       198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~  272 (606)
T KOG0547|consen  198 KFDEALFDVTVLCILEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK  272 (606)
T ss_pred             cHHHHHHhhhHHHHhhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence            88888643222111110011111111111111     112222222222 11 122333333322222211         


Q ss_pred             ----------------c---CChhhHHHHHHhC----CCCC--C---------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043068          207 ----------------M---GMIENAKKVFDVM----TVKP--N---------LLAYNTMINGFCKKGELEEAKKCMNEM  252 (526)
Q Consensus       207 ----------------~---g~~~~A~~~~~~~----~~~p--~---------~~~~~~li~~~~~~g~~~~A~~~~~~m  252 (526)
                                      .   ..+.+|...+.+-    ...+  +         ..+.......+.-.|+...|..-|+..
T Consensus       273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~  352 (606)
T KOG0547|consen  273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA  352 (606)
T ss_pred             CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence                            0   1233333333221    0011  1         112222223344578999999999999


Q ss_pred             HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 043068          253 MNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVK  332 (526)
Q Consensus       253 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  332 (526)
                      +.....++. .|-.+..+|....+.++..+.|.+..+.. +-++.+|.--...+.-.+++++|..-|++.+..++. +..
T Consensus       353 I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~  429 (606)
T KOG0547|consen  353 IKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAY  429 (606)
T ss_pred             HhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhH
Confidence            987544333 37777788999999999999999998876 667778888888888999999999999999988655 677


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC---------HHH
Q 043068          333 SYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN---------FVS  403 (526)
Q Consensus       333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---------~~~  403 (526)
                      .|..+..+..+.++++++...|++.+++ ++-.+.+|+.....+...+++++|.+.|+..++.  .|+         ...
T Consensus       430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV  506 (606)
T KOG0547|consen  430 AYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLV  506 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhh
Confidence            8888888888999999999999999877 4445678999999999999999999999998762  233         222


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          404 YNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       404 ~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                      .-.++..  +-.+++..|.+++++.++.++. ....|..|...-.+.|+.++|+++|++....--
T Consensus       507 ~Ka~l~~--qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr  568 (606)
T KOG0547|consen  507 HKALLVL--QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQLAR  568 (606)
T ss_pred             hhhHhhh--chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            2222221  2238999999999999987655 567899999999999999999999998766543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.65  E-value=1.2e-15  Score=142.16  Aligned_cols=257  Identities=16%  Similarity=0.160  Sum_probs=63.0

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068          130 IKAYGDRGNVKAAIFWFHQAKQIE-NGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG  208 (526)
Q Consensus       130 i~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  208 (526)
                      ...+...|++++|++++++..... ...+...|..+...+...++++.|.+.++++...+  +.+...+..++.. ...+
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~~~   91 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cccc
Confidence            344444555555555553322111 11223333334444444455555555555555443  2233344444444 3445


Q ss_pred             ChhhHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068          209 MIENAKKVFDVM-TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRG-CRPNELTYNAMIYGLCINGRVDEAKMLMAK  286 (526)
Q Consensus       209 ~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  286 (526)
                      ++++|.++++.. ...++...+..++..+.+.++++++.++++++.... .+.+...|..+...+.+.|+.++|++.+++
T Consensus        92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~  171 (280)
T PF13429_consen   92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK  171 (280)
T ss_dssp             --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            555555544443 222333444444455555555555555555544321 123444444555555555555555555555


Q ss_pred             HHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 043068          287 MRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV  366 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~  366 (526)
                      ..+.. |.+......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+..|++..+.. +.|.
T Consensus       172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~  248 (280)
T PF13429_consen  172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP  248 (280)
T ss_dssp             HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred             HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence            54443 3334444555555555555555544444444432 1123334445555555555555555555554431 1244


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHc
Q 043068          367 FSFNAVFRILVENGELDRAILLLKQM  392 (526)
Q Consensus       367 ~~~~~li~~~~~~g~~~~a~~~~~~~  392 (526)
                      .....+..++.+.|+.++|.++.++.
T Consensus       249 ~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  249 LWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             HHHHHHHHHHT---------------
T ss_pred             cccccccccccccccccccccccccc
Confidence            44445555555555555555554443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.63  E-value=2.6e-11  Score=116.09  Aligned_cols=359  Identities=10%  Similarity=0.033  Sum_probs=177.6

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 043068           95 YTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRV  171 (526)
Q Consensus        95 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~  171 (526)
                      |..-++.+.+.+.++.|+.++....   +.....|...+..=-..|..++-..+|+++...-+ .....|-...+.+-..
T Consensus       519 w~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~a  597 (913)
T KOG0495|consen  519 WLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKA  597 (913)
T ss_pred             HhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhc
Confidence            3333444444444444444444322   11222333333333334444444455554443332 2233344444444444


Q ss_pred             CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043068          172 NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAYNTMINGFCKKGELEEAKKCMN  250 (526)
Q Consensus       172 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  250 (526)
                      |++..|..++.+..+..  |.+...|...+.......+++.|..+|.+. ...|+...|.--+...--.+..++|+++++
T Consensus       598 gdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllE  675 (913)
T KOG0495|consen  598 GDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLE  675 (913)
T ss_pred             CCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence            55555555555555443  444455555555555555555555555544 233444444444444444455555555555


Q ss_pred             HHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 043068          251 EMMNRGCRPN-ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNP  329 (526)
Q Consensus       251 ~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~  329 (526)
                      +.++.  -|+ ...|..+...+-+.++++.|...|..-.+. ++-.+-.|..+...--+.|.+-.|..+++...-.+++ 
T Consensus       676 e~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-  751 (913)
T KOG0495|consen  676 EALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-  751 (913)
T ss_pred             HHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-
Confidence            54443  222 233444444444455555554444433221 2333334444444444555555555555555544433 


Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHH
Q 043068          330 DVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIIC  409 (526)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~  409 (526)
                      +...|...|..-.+.|+.+.|..+..+..+. ++.+...|..-|...-+.++-....+.+++-     .-|......+..
T Consensus       752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~  825 (913)
T KOG0495|consen  752 NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAK  825 (913)
T ss_pred             cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHH
Confidence            4455555555555555555555555555443 2223344444444444444433333333322     234444555555


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          410 GLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       410 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                      .+... .+++.|.+.|.+.++.+.. .-.+|.-+...+.++|.-+.-.+++.+...-.|
T Consensus       826 lfw~e-~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~~EP  882 (913)
T KOG0495|consen  826 LFWSE-KKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP  882 (913)
T ss_pred             HHHHH-HHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence            55544 6788888888888876543 456777777778888888888888877777666

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.63  E-value=4.7e-12  Score=115.30  Aligned_cols=335  Identities=13%  Similarity=0.145  Sum_probs=248.2

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 043068           92 TPCYTAITDVLLSHSLISIAASLLKNSN----KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGV  167 (526)
Q Consensus        92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~  167 (526)
                      ..+|..++.++++-...+.|.+++++..    +....+||.+|.+-.-    ....++..+|......||..|+|+++++
T Consensus       207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c  282 (625)
T KOG4422|consen  207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLSC  282 (625)
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHHH
Confidence            3478999999999999999999999754    5667789988876543    3337889999999999999999999999


Q ss_pred             HHhcCChhH----HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhh-HHHHHHhC-----C-----CCC-CHHHHHH
Q 043068          168 LVRVNSIKL----AEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIEN-AKKVFDVM-----T-----VKP-NLLAYNT  231 (526)
Q Consensus       168 ~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~-----~-----~~p-~~~~~~~  231 (526)
                      ..+.|+++.    |.+++.+|++.| +.|...+|..+|..+++.++..+ |..++.++     |     +.| |...|..
T Consensus       283 ~akfg~F~~ar~aalqil~EmKeiG-VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~  361 (625)
T KOG4422|consen  283 AAKFGKFEDARKAALQILGEMKEIG-VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS  361 (625)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHhC-CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence            999998865    467788888888 89999999999999999888755 44455443     1     223 4556788


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043068          232 MINGFCKKGELEEAKKCMNEMMNRG----CRPN---ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLK  304 (526)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  304 (526)
                      .++.|....+.+-|.++..-+....    +.|+   ..-|..+....|+....+.-..+|+.|.-.-+-|+..+..-+++
T Consensus       362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr  441 (625)
T KOG4422|consen  362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR  441 (625)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence            8888989999999998876554421    2333   23466788888999999999999999987777788888889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-Ch--------h-----HHHHH-------HHHHHHCCCC
Q 043068          305 GLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIG-KS--------D-----EAISL-------LKEMRARGLK  363 (526)
Q Consensus       305 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~-----~A~~~-------~~~m~~~~~~  363 (526)
                      +..-.|.++-.-+++.+++..|...+...-.-++..+++.. .+        .     -|..+       -.+|.+.  .
T Consensus       442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~  519 (625)
T KOG4422|consen  442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--D  519 (625)
T ss_pred             HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--c
Confidence            99999999999999999988875545544444555555443 11        0     01111       1223333  3


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCC-CCcCHHHHH---HHHHHHHhcCCCHHHHHHHHHHHHHCCCC
Q 043068          364 PTVFSFNAVFRILVENGELDRAILLLKQMPQMD-CLPNFVSYN---TIICGLCMAKGRMQDVEDLVDRMIRSGHN  434 (526)
Q Consensus       364 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~---~ll~~~~~~~g~~~~a~~~~~~~~~~~~~  434 (526)
                      ......+.++-.+.+.|+.++|.++|..+.+.+ -.|-....|   -+++...+ ..+...|...++-|...+..
T Consensus       520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~-~~spsqA~~~lQ~a~~~n~~  593 (625)
T KOG4422|consen  520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKV-SNSPSQAIEVLQLASAFNLP  593 (625)
T ss_pred             CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCch
Confidence            445567888888999999999999999885432 223333444   55555444 47888999999988776544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.62  E-value=3e-15  Score=139.44  Aligned_cols=255  Identities=15%  Similarity=0.201  Sum_probs=109.2

Q ss_pred             HHHHHHHhCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 043068           97 AITDVLLSHSLISIAASLLKNSN-----KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRV  171 (526)
Q Consensus        97 ~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~  171 (526)
                      .++.++.+.|++++|.+++++..     +.++..|..+...+...++++.|++.++++...+. .+...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence            45777888889999998885432     23344566677777788999999999999887664 356677777777 788


Q ss_pred             CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043068          172 NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM----TVKPNLLAYNTMINGFCKKGELEEAKK  247 (526)
Q Consensus       172 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~  247 (526)
                      +++++|.+++....+..   ++...+..++..+.+.++++++.++++.+    ..+.+...|..+...+.+.|+.++|++
T Consensus        91 ~~~~~A~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERD---GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             ccccccccccccccccc---cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999988776653   46677788888899999999999998885    334577788888999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 043068          248 CMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANM  327 (526)
Q Consensus       248 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  327 (526)
                      .|++.++.... |......++..+...|+.+++..+++...+.. +.+...+..+..+|...|+.++|+.++++..+.++
T Consensus       168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p  245 (280)
T PF13429_consen  168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP  245 (280)
T ss_dssp             HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence            99999987332 57778888889999999999888888887664 56667788899999999999999999999888754


Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068          328 NPDVKSYEVVINGFCKIGKSDEAISLLKEMRA  359 (526)
Q Consensus       328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  359 (526)
                      . |......+..++...|+.++|.++.++..+
T Consensus       246 ~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  246 D-DPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             T--HHHHHHHHHHHT-----------------
T ss_pred             c-cccccccccccccccccccccccccccccc
Confidence            4 788888899999999999999998887653

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.62  E-value=1.1e-11  Score=122.93  Aligned_cols=357  Identities=14%  Similarity=0.156  Sum_probs=263.3

Q ss_pred             HHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHcC
Q 043068           60 KVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKN---SNKLSDFFISKLIKAYGDR  136 (526)
Q Consensus        60 ~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~li~~~~~~  136 (526)
                      ..+..+|+.++|..++..++++.|..      ..+|..|+.++-..|+.+++....-.   ..+.+...|..+.....+.
T Consensus       147 N~lfarg~~eeA~~i~~EvIkqdp~~------~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~  220 (895)
T KOG2076|consen  147 NNLFARGDLEEAEEILMEVIKQDPRN------PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL  220 (895)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCccc------hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence            34445799999999999999987632      34599999999999999998775432   2345567899999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-CHH----HHHHHHHHHHHcCChh
Q 043068          137 GNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPP-DVS----TYTTMIRGYCKMGMIE  211 (526)
Q Consensus       137 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~----~~~~li~~~~~~g~~~  211 (526)
                      |++++|.-.|.++.+..+ ++...+-.-+..|-+.|+...|.+-|.++....  || |..    ..-..++.+...++-+
T Consensus       221 ~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p~~d~er~~d~i~~~~~~~~~~~~~e  297 (895)
T KOG2076|consen  221 GNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLD--PPVDIERIEDLIRRVAHYFITHNERE  297 (895)
T ss_pred             ccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHHHHHhhHHH
Confidence            999999999999998885 555555566788999999999999999999875  33 222    2233456677778889


Q ss_pred             hHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------------------C
Q 043068          212 NAKKVFDVM----TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRP---------------------------N  260 (526)
Q Consensus       212 ~A~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---------------------------~  260 (526)
                      .|.+.++..    +-..+...++.++..|.+...++.|......+......+                           +
T Consensus       298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~  377 (895)
T KOG2076|consen  298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD  377 (895)
T ss_pred             HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence            999988876    223456678899999999999999999988887722222                           2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043068          261 ELTYNAMIYGLCINGRVDEAKMLMAKMRLNG--FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVI  338 (526)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li  338 (526)
                      ... -.++-++......+....+.....+..  ...++..|.-+..+|...|++.+|+.+|..+......-+...|-.+.
T Consensus       378 l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a  456 (895)
T KOG2076|consen  378 LRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA  456 (895)
T ss_pred             chh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence            222 122334445555555555555555555  34456678889999999999999999999999876666788899999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHccc--------CCCCcCHHHHHHHHH
Q 043068          339 NGFCKIGKSDEAISLLKEMRARGLKPT-VFSFNAVFRILVENGELDRAILLLKQMPQ--------MDCLPNFVSYNTIIC  409 (526)
Q Consensus       339 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~p~~~~~~~ll~  409 (526)
                      .+|...|.+++|.+.|+.....  .|+ ...--.|...+.+.|+.++|.+.+..+..        .+..|+.........
T Consensus       457 ~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d  534 (895)
T KOG2076|consen  457 RCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD  534 (895)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence            9999999999999999999876  343 44555677778899999999999998653        123344444444444


Q ss_pred             HHHhcCCCHHHHHHHHHHHH
Q 043068          410 GLCMAKGRMQDVEDLVDRMI  429 (526)
Q Consensus       410 ~~~~~~g~~~~a~~~~~~~~  429 (526)
                      .+... |+.++=..+...|+
T Consensus       535 ~l~~~-gk~E~fi~t~~~Lv  553 (895)
T KOG2076|consen  535 ILFQV-GKREEFINTASTLV  553 (895)
T ss_pred             HHHHh-hhHHHHHHHHHHHH
Confidence            44444 77766554444443

>TIGR00540 hemY_coli hemY protein

Probab=99.61  E-value=3.9e-12  Score=124.73  Aligned_cols=289  Identities=10%  Similarity=0.040  Sum_probs=161.8

Q ss_pred             cCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChhhH
Q 043068          135 DRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD-VSTYTTMIRGYCKMGMIENA  213 (526)
Q Consensus       135 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A  213 (526)
                      ..|+++.|.+.+.+..+..+. ....+-....++.+.|+++.|.+.+.+..+..  |.+ ..........+...|+++.|
T Consensus        96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence            467777777777665554321 12333344455666677777777777765543  222 22333346666667777777


Q ss_pred             HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HHcCCHHHHHHHHHHH
Q 043068          214 KKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYN-AMIYGL---CINGRVDEAKMLMAKM  287 (526)
Q Consensus       214 ~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~---~~~g~~~~a~~~~~~~  287 (526)
                      .+.++.+ ...| +...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..++   ...+..+++.+.+..+
T Consensus       173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~  251 (409)
T TIGR00540       173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW  251 (409)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            7777666 2223 4556666777777777777777777777766544 222221 111111   2222223333344444


Q ss_pred             HHcC---CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 043068          288 RLNG---FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSY-EVVINGFCKIGKSDEAISLLKEMRARGLK  363 (526)
Q Consensus       288 ~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~  363 (526)
                      .+..   .+.+...+..++..+...|+.++|.+++++..+..+......+ ..........++.+.+++.+++..+.  .
T Consensus       252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~  329 (409)
T TIGR00540       252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--V  329 (409)
T ss_pred             HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--C
Confidence            3321   1136667777777777777777777777777775433211111 11112223346667777777766654  3


Q ss_pred             CCH---HHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043068          364 PTV---FSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIR  430 (526)
Q Consensus       364 p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~  430 (526)
                      |+.   ....++...+.+.|++++|.+.|+........|+...+..+...+... |+.++|.+++++...
T Consensus       330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~-g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA-GDKAEAAAMRQDSLG  398 (409)
T ss_pred             CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence            332   344566777777777777777777433222457777766666655544 777777777776543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.61  E-value=6.6e-12  Score=110.41  Aligned_cols=290  Identities=16%  Similarity=0.199  Sum_probs=223.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCChhhH
Q 043068          136 RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD--VSTYTTMIRGYCKMGMIENA  213 (526)
Q Consensus       136 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A  213 (526)
                      ..+.++|+++|-+|.+.+. .+..+.-+|.+.|.+.|.++.|+++...+.++...+.+  ......|..-|...|-+|.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            5688999999999987553 44666778889999999999999999999876432222  23456678889999999999


Q ss_pred             HHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043068          214 KKVFDVMTVKP--NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE----LTYNAMIYGLCINGRVDEAKMLMAKM  287 (526)
Q Consensus       214 ~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~  287 (526)
                      +.+|..+-..|  -......|+..|-...+|++|+++-+++.+.+-.+..    ..|.-|...+....+++.|..++.+.
T Consensus       127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA  206 (389)
T COG2956         127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA  206 (389)
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            99999983223  3456788999999999999999999999887655432    23455566666678899999999999


Q ss_pred             HHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 043068          288 RLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVF  367 (526)
Q Consensus       288 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~  367 (526)
                      .+.. +..+..-..+.+.+...|+++.|.+.++.+.+.++.--..+...|..+|.+.|+.++.+..+.++.+..  +...
T Consensus       207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~  283 (389)
T COG2956         207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGAD  283 (389)
T ss_pred             HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCcc
Confidence            8765 455556667888899999999999999999999766666778899999999999999999999998873  3444


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHC
Q 043068          368 SFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMA--KGRMQDVEDLVDRMIRS  431 (526)
Q Consensus       368 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--~g~~~~a~~~~~~~~~~  431 (526)
                      .-..+...-....-.+.|..++.+-...  .|+...+..++..-...  .|...+-..++..|+..
T Consensus       284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge  347 (389)
T COG2956         284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE  347 (389)
T ss_pred             HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence            4455555555566677777777666653  49999999999754322  24566677777777754

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=2.1e-11  Score=112.31  Aligned_cols=290  Identities=11%  Similarity=0.052  Sum_probs=198.0

Q ss_pred             HHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC----CHHHHHHHHHHHHhcC
Q 043068          166 GVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP----NLLAYNTMINGFCKKG  240 (526)
Q Consensus       166 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~li~~~~~~g  240 (526)
                      .++-...+.+++.+-.......| .+.+...-+....+.-...|++.|+.+|+++ ...|    |..+|+.++-.-....
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s  313 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS  313 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence            34445556677777777777766 5555555555666666777888888888877 1122    5666766654322211


Q ss_pred             CHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHH
Q 043068          241 ELE-EAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYL  319 (526)
Q Consensus       241 ~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  319 (526)
                      .+. -|..+++   -.  +--+.|...+.+.|.-.++.++|..+|++..+.+ +.....|+.+.+-|....+...|.+-+
T Consensus       314 kLs~LA~~v~~---id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY  387 (559)
T KOG1155|consen  314 KLSYLAQNVSN---ID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY  387 (559)
T ss_pred             HHHHHHHHHHH---hc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence            111 1111111   11  1234566777777888888888888888888776 566778888888888888888888888


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCc
Q 043068          320 RNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLP  399 (526)
Q Consensus       320 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p  399 (526)
                      +..++-++. |-..|-.|.++|.-.+.+.-|+-.|++..+.. +-|...|.+|..+|.+.++.++|++.|......| ..
T Consensus       388 RrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt  464 (559)
T KOG1155|consen  388 RRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT  464 (559)
T ss_pred             HHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence            888887654 88888888888888888888888888887652 2367788888888888889999988888888754 23


Q ss_pred             CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043068          400 NFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS----GHNLD--FTMYSCLLKGYCEEGNVENVMQIAHEMVTK  466 (526)
Q Consensus       400 ~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  466 (526)
                      +...+..+...+-+. ++..+|.+.+++-++.    |...+  ....--|..-+.+.+++++|.........-
T Consensus       465 e~~~l~~LakLye~l-~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  465 EGSALVRLAKLYEEL-KDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             chHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence            456777777776554 8888888888776652    33212  122222555567788888888776665544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=6.3e-11  Score=109.21  Aligned_cols=374  Identities=13%  Similarity=0.087  Sum_probs=263.5

Q ss_pred             HHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHH--HHHHHHHHcCC
Q 043068           60 KVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFI--SKLIKAYGDRG  137 (526)
Q Consensus        60 ~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~li~~~~~~g  137 (526)
                      -++...|....|...|..+....|      ..-.+|..|.++..   ..+.+ ..+......+...+  -.+..+|....
T Consensus       172 vv~k~~~~~s~A~~sfv~~v~~~P------~~W~AWleL~~lit---~~e~~-~~l~~~l~~~~h~M~~~F~~~a~~el~  241 (559)
T KOG1155|consen  172 VVLKELGLLSLAIDSFVEVVNRYP------WFWSAWLELSELIT---DIEIL-SILVVGLPSDMHWMKKFFLKKAYQELH  241 (559)
T ss_pred             HHHHhhchHHHHHHHHHHHHhcCC------cchHHHHHHHHhhc---hHHHH-HHHHhcCcccchHHHHHHHHHHHHHHH
Confidence            334446667778887777765433      23345666555432   22222 22222222222211  13556677777


Q ss_pred             CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHcCChh-hHHH
Q 043068          138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVV-PPDVSTYTTMIRGYCKMGMIE-NAKK  215 (526)
Q Consensus       138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~-~A~~  215 (526)
                      ..+++++-.+.....|...+...-+....+.-...++++|+.+|+++.+.... -.|..+|..++-.--...++. -|..
T Consensus       242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~  321 (559)
T KOG1155|consen  242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN  321 (559)
T ss_pred             HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence            88999998888888887555555555555666778999999999999987622 135677777664332221211 2333


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 043068          216 VFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN  295 (526)
Q Consensus       216 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~  295 (526)
                      +++-=+.  -..|+..+.+-|.-.++.++|...|++.++.+.. ....|+.+.+-|....+...|.+-|+.+.+-. +.|
T Consensus       322 v~~idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~D  397 (559)
T KOG1155|consen  322 VSNIDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRD  397 (559)
T ss_pred             HHHhccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chh
Confidence            3332233  3457778888899999999999999999988544 56789999999999999999999999999876 778


Q ss_pred             HHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043068          296 VSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRI  375 (526)
Q Consensus       296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~  375 (526)
                      -..|-.+.++|.-.+...-|+-.|++..+..+. |...|.+|..+|.+.++.++|++.|.+....|-. +...+..|...
T Consensus       398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakL  475 (559)
T KOG1155|consen  398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKL  475 (559)
T ss_pred             HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHH
Confidence            889999999999999999999999999987544 8899999999999999999999999999887643 66889999999


Q ss_pred             HHHcCCHHHHHHHHHHccc----CC-CCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043068          376 LVENGELDRAILLLKQMPQ----MD-CLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEE  450 (526)
Q Consensus       376 ~~~~g~~~~a~~~~~~~~~----~~-~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  450 (526)
                      |-+.++.++|...|++.++    .| +.|...--...+..+....+++++|..+......-                  .
T Consensus       476 ye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~------------------~  537 (559)
T KOG1155|consen  476 YEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG------------------E  537 (559)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC------------------C
Confidence            9999999999999988765    22 22333333334445555557777776665554431                  2


Q ss_pred             CCHHHHHHHHHHHHHcC
Q 043068          451 GNVENVMQIAHEMVTKK  467 (526)
Q Consensus       451 g~~~~a~~~~~~m~~~~  467 (526)
                      ...++|..+++++.+..
T Consensus       538 ~e~eeak~LlReir~~~  554 (559)
T KOG1155|consen  538 TECEEAKALLREIRKIQ  554 (559)
T ss_pred             chHHHHHHHHHHHHHhc
Confidence            34566777776665543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=8.8e-13  Score=126.78  Aligned_cols=285  Identities=13%  Similarity=0.074  Sum_probs=190.0

Q ss_pred             CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHcCChh-hHHH
Q 043068          138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVV-PPDVSTYTTMIRGYCKMGMIE-NAKK  215 (526)
Q Consensus       138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~-~A~~  215 (526)
                      +.++|+..|++..... .-+.++...+..+|...+++++|+++|+.+.+.... ..+..+|.+.+--+-+.-... -|..
T Consensus       334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~  412 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD  412 (638)
T ss_pred             HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence            5667788887744333 233466667777888888888888888887765311 224566666554332211111 1333


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 043068          216 VFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRP-NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKD  294 (526)
Q Consensus       216 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  294 (526)
                      +.+..+  -...+|-++.++|.-.++.+.|++.|++.++.  .| ...+|+.+..-+.....+|.|...|+..+    ..
T Consensus       413 Li~~~~--~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~  484 (638)
T KOG1126|consen  413 LIDTDP--NSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GV  484 (638)
T ss_pred             HHhhCC--CCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cC
Confidence            333333  24567888888888888888888888887765  33 56777777777788888888888888776    33


Q ss_pred             CHHhHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 043068          295 NVSTHK---SMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNA  371 (526)
Q Consensus       295 ~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~  371 (526)
                      |+..|+   -+.-.|.+.++++.|+-.|++..+.++. +.+....+...+.+.|+.++|++++++......+ |+..--.
T Consensus       485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~  562 (638)
T KOG1126|consen  485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH  562 (638)
T ss_pred             CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence            444444   4666778888888888888888777654 5666666777777888888888888887765422 3333334


Q ss_pred             HHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC
Q 043068          372 VFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNL  435 (526)
Q Consensus       372 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p  435 (526)
                      -+..+...+++++|+..++++++  +.|+..+...++.-.++..|+.+.|..-|.-+.+..+++
T Consensus       563 ~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  563 RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence            45556667888888888888877  567776666666666666788888888887777655443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=1e-12  Score=126.40  Aligned_cols=288  Identities=12%  Similarity=0.097  Sum_probs=224.0

Q ss_pred             CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCC----CCHHHHHHHHHHHHhcCCHHHHH
Q 043068          172 NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVK----PNLLAYNTMINGFCKKGELEEAK  246 (526)
Q Consensus       172 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~----p~~~~~~~li~~~~~~g~~~~A~  246 (526)
                      -+..+|...|..+.+.  +..+..+...+.++|...+++++|+++|+.+ ...    .+...|.+.+--+-+    +-++
T Consensus       333 y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L  406 (638)
T KOG1126|consen  333 YNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL  406 (638)
T ss_pred             HHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence            3567899999996555  3556688889999999999999999999998 222    267788887765433    2222


Q ss_pred             HHH-HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068          247 KCM-NEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA  325 (526)
Q Consensus       247 ~~~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  325 (526)
                      .++ +++.+.. +-.+.+|-++.++|.-+++.+.|++.|++..+.. +....+|+.+..-+....++|.|...|+..+..
T Consensus       407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~  484 (638)
T KOG1126|consen  407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV  484 (638)
T ss_pred             HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence            332 3333332 3368899999999999999999999999998764 447889999999999999999999999999876


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHH
Q 043068          326 NMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYN  405 (526)
Q Consensus       326 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  405 (526)
                      .+. +..+|--+...|.+.++++.|+-.|++..+.+.. +.+....+...+-+.|+.|+|+++++++....-.-...-|.
T Consensus       485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~  562 (638)
T KOG1126|consen  485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH  562 (638)
T ss_pred             Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence            443 4556667788999999999999999999886422 56677778888999999999999999998744222223333


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccc
Q 043068          406 TIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLK  472 (526)
Q Consensus       406 ~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~  472 (526)
                      ..--. .. .++.++|+..++++.+.-++ +..++..++..|.+.|+.+.|+.-|--+.+.+|.-.+
T Consensus       563 ~~~il-~~-~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  563 RASIL-FS-LGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHH-Hh-hcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            33222 23 38999999999999985333 5678889999999999999999999999888875443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.56  E-value=2.4e-09  Score=103.01  Aligned_cols=374  Identities=12%  Similarity=0.055  Sum_probs=212.6

Q ss_pred             hHHHHHHHHHhCCCHHHHHHHHHhcC--------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC--hhhHHH
Q 043068           94 CYTAITDVLLSHSLISIAASLLKNSN--------KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGAC--LYSYNS  163 (526)
Q Consensus        94 ~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~  163 (526)
                      .|..-+.+--.+|+.+.+.++++++.        ..+-..|-.=...|-..|..-.+..+.......|+...  ..+|+.
T Consensus       442 IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~  521 (913)
T KOG0495|consen  442 IWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLD  521 (913)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhh
Confidence            34444444455666666555555421        22223333334444444444444444444444443211  345555


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 043068          164 LLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGE  241 (526)
Q Consensus       164 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~  241 (526)
                      -...|.+.+.++-|..+|...++..  |.+...|...+..--..|..++...+|++.  .++.....|-.....+...|+
T Consensus       522 da~~~~k~~~~~carAVya~alqvf--p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agd  599 (913)
T KOG0495|consen  522 DAQSCEKRPAIECARAVYAHALQVF--PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGD  599 (913)
T ss_pred             hHHHHHhcchHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCC
Confidence            5556666666666666666666553  555556665555555556666666666665  333344455555556666677


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHH
Q 043068          242 LEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRN  321 (526)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  321 (526)
                      +..|..++.+..+.... +...|-..+..-.....++.|..+|.+....  .|+..+|.--+...--.+..++|.+++++
T Consensus       600 v~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe  676 (913)
T KOG0495|consen  600 VPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEE  676 (913)
T ss_pred             cHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence            77777666666665433 5556666666666666666666666666543  35555555555555556666666666666


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCH
Q 043068          322 VMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNF  401 (526)
Q Consensus       322 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~  401 (526)
                      .++.- +.-...|..+...+-+.++.+.|.+.|..-.+. ++-....|-.|...=-+.|.+-+|..++++..-.+ +-+.
T Consensus       677 ~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~  753 (913)
T KOG0495|consen  677 ALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNA  753 (913)
T ss_pred             HHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcc
Confidence            65542 112334555555666666666666655544433 12223344444555555666666666666655433 2344


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHC-----------------------------CCCCCHHHHHHHHHHHHhCCC
Q 043068          402 VSYNTIICGLCMAKGRMQDVEDLVDRMIRS-----------------------------GHNLDFTMYSCLLKGYCEEGN  452 (526)
Q Consensus       402 ~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~-----------------------------~~~p~~~~~~~l~~~~~~~g~  452 (526)
                      ..|-..|..-.+. |+.+.|..+..++++.                             ...-|+.+.-.+...+....+
T Consensus       754 ~lwle~Ir~ElR~-gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k  832 (913)
T KOG0495|consen  754 LLWLESIRMELRA-GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKK  832 (913)
T ss_pred             hhHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence            5555555555554 6666666655555432                             134466777778888888899


Q ss_pred             HHHHHHHHHHHHHcCCCccchhhh
Q 043068          453 VENVMQIAHEMVTKKGRLLKLKNF  476 (526)
Q Consensus       453 ~~~a~~~~~~m~~~~~~~~~~~~~  476 (526)
                      +++|.+-|.+.++.+++.-+.--+
T Consensus       833 ~~kar~Wf~Ravk~d~d~GD~wa~  856 (913)
T KOG0495|consen  833 IEKAREWFERAVKKDPDNGDAWAW  856 (913)
T ss_pred             HHHHHHHHHHHHccCCccchHHHH
Confidence            999999999999999876654333

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.53  E-value=7.3e-11  Score=107.16  Aligned_cols=281  Identities=12%  Similarity=0.147  Sum_probs=191.7

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC--CCCHHHHHHHHHHHHhcCCHHHHHH
Q 043068          171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV--KPNLLAYNTMINGFCKKGELEEAKK  247 (526)
Q Consensus       171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~--~p~~~~~~~li~~~~~~g~~~~A~~  247 (526)
                      .|++.+|+++..+-.+.+  +.....|..-+++.-..|+.+.+-.++.+. ..  .++...+-+........|+++.|..
T Consensus        97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            477888888777776665  444556666667777778888888877776 22  3455566666777777888888888


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HhHHHHHHHHHHcCCHHHHHHHHH
Q 043068          248 CMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNV-------STHKSMLKGLCVVGKFDQAVGYLR  320 (526)
Q Consensus       248 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~  320 (526)
                      -++++.+.+.. ..........+|.+.|++.....++..+.+.|.-.+.       .+|+.+++-....+..+.-...++
T Consensus       175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~  253 (400)
T COG3071         175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK  253 (400)
T ss_pred             HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            77777776544 5566777778888888888888888888777755443       345555555555555555555665


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccC-CCCc
Q 043068          321 NVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQM-DCLP  399 (526)
Q Consensus       321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p  399 (526)
                      ..... .+.+...-.+++.-+.+.|+.++|.++.++..+++..|+.    .....+.+-++...-++..+.-.+. +..|
T Consensus       254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p  328 (400)
T COG3071         254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP  328 (400)
T ss_pred             hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence            55443 2335555667777888888888888888888877665551    2223455667777766666665542 2223


Q ss_pred             CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043068          400 NFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMV  464 (526)
Q Consensus       400 ~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  464 (526)
                        ..+.++- -+|..++.+.+|.+.|+..++  ..|+..+|+.+..++.+.|+..+|.++.++.+
T Consensus       329 --~L~~tLG-~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         329 --LLLSTLG-RLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             --hHHHHHH-HHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence              3334443 444555888888888887776  56788888888888888888888888888776

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.49  E-value=1e-09  Score=99.80  Aligned_cols=285  Identities=10%  Similarity=0.113  Sum_probs=203.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHH
Q 043068          136 RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKK  215 (526)
Q Consensus       136 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  215 (526)
                      .|+|.+|.++..+..+.+..| ...|..-..+.-+.|+.+.+-..+.+..+.. -.++....-+..+.....|+++.|..
T Consensus        97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHH
Confidence            688888888888776666433 5556666677777888888888888887652 14566667777777888888888877


Q ss_pred             HHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068          216 VFDVM-TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE-------LTYNAMIYGLCINGRVDEAKMLMAK  286 (526)
Q Consensus       216 ~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~  286 (526)
                      -..++ +. +.+.........+|.+.|++.....++.+|.+.|.--++       .+|..+++-....+..+.-...++.
T Consensus       175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            76665 22 345667777888888888888888888888888765443       3466666666555555555556665


Q ss_pred             HHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 043068          287 MRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV  366 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~  366 (526)
                      .... .+.++..-.+++.-+.++|+.++|.++.++..+.+..|..    ...-.+.+.++.+.-++..+.-.+.. +-++
T Consensus       255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p  328 (400)
T COG3071         255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP  328 (400)
T ss_pred             ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence            5332 2556667777888888889999998888888888766552    22234556777777777776655441 2244


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 043068          367 FSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS  431 (526)
Q Consensus       367 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~  431 (526)
                      ..+.+|-..|.+.+.|.+|.+.|+...+  ..|+..+|+.+-+++... |+..+|.+..++....
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~-g~~~~A~~~r~e~L~~  390 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQL-GEPEEAEQVRREALLL  390 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHH
Confidence            6778888888888999999998887777  458888888888888765 8888888888877644

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.45  E-value=6.2e-08  Score=90.09  Aligned_cols=366  Identities=12%  Similarity=0.072  Sum_probs=236.2

Q ss_pred             hHHHHHHHHHhCCCHHHHHHHHHhcCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 043068           94 CYTAITDVLLSHSLISIAASLLKNSNKLSD---FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVR  170 (526)
Q Consensus        94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~  170 (526)
                      .|...+.--...+.+..|++++++....+.   ..|-..+.+=.+...+.-|..+++++...-+..| ..|-..+.+--.
T Consensus        75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~  153 (677)
T KOG1915|consen   75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEM  153 (677)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHH
Confidence            366666666778889999999998875543   3566778888889999999999999987654333 345555666677


Q ss_pred             cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043068          171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAYNTMINGFCKKGELEEAKKCM  249 (526)
Q Consensus       171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~  249 (526)
                      .|++..|.++|+...+-   .|+...|++.|+.-.+-..++.|..++++. -+.|++.+|--.+..-.+.|+...|..+|
T Consensus       154 LgNi~gaRqiferW~~w---~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy  230 (677)
T KOG1915|consen  154 LGNIAGARQIFERWMEW---EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY  230 (677)
T ss_pred             hcccHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            89999999999999874   799999999999999999999999999997 55799999999999999999999999999


Q ss_pred             HHHHHc-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------------------------
Q 043068          250 NEMMNR-GC-RPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGF-----------------------------------  292 (526)
Q Consensus       250 ~~m~~~-g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------------------------------  292 (526)
                      ....+. |- .-+...|.+...--.++..++.|.-+|.-..+.-.                                   
T Consensus       231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q  310 (677)
T KOG1915|consen  231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ  310 (677)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence            988764 11 11223344444433455666666666665554310                                   


Q ss_pred             --------CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH--------HHHHhcCChhHHHHHHH
Q 043068          293 --------KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDV-KSYEVVI--------NGFCKIGKSDEAISLLK  355 (526)
Q Consensus       293 --------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li--------~~~~~~g~~~~A~~~~~  355 (526)
                              +-|-.+|--.+..-...|+.+...++|+..+..-++... ..|...|        -.-....+.+.+.++++
T Consensus       311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq  390 (677)
T KOG1915|consen  311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ  390 (677)
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence                    222223333333334445555555555555443211111 0111111        11123345555555555


Q ss_pred             HHHHCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 043068          356 EMRARGLKPTVFSFNAVFRIL----VENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS  431 (526)
Q Consensus       356 ~m~~~~~~p~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~  431 (526)
                      ..++. ++-...||..+--+|    .++.++..|.+++...+.  .-|...+|...|..-.. .+.++.+..++++.++-
T Consensus       391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElq-L~efDRcRkLYEkfle~  466 (677)
T KOG1915|consen  391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQ-LREFDRCRKLYEKFLEF  466 (677)
T ss_pred             HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHH-HhhHHHHHHHHHHHHhc
Confidence            55542 222333443333222    355666666666666554  34666666666655433 36777777777777776


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          432 GHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       432 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                      ++. +..+|......=...|+.+.|..+|+-.+....
T Consensus       467 ~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~  502 (677)
T KOG1915|consen  467 SPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPA  502 (677)
T ss_pred             ChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence            544 666777766666667777777777776665543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.44  E-value=1.3e-10  Score=105.30  Aligned_cols=191  Identities=14%  Similarity=0.170  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY  204 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~  204 (526)
                      .+..+...|...|++++|.+.++++....+ .+...+..+...+...|++++|.+.+++..+..  +.+...+..+...+
T Consensus        33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~  109 (234)
T TIGR02521        33 IRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHH
Confidence            344455555555555555555555544332 234445555555555555555555555555543  34444555555555


Q ss_pred             HHcCChhhHHHHHHhC-C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043068          205 CKMGMIENAKKVFDVM-T---VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEA  280 (526)
Q Consensus       205 ~~~g~~~~A~~~~~~~-~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  280 (526)
                      ...|++++|.+.+++. .   .......+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHH
Confidence            5555555555555543 1   0111223333444444444444444444444433211 233333444444444444444


Q ss_pred             HHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHH
Q 043068          281 KMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLR  320 (526)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  320 (526)
                      ...+++..+. .+.+...+..++..+...|+.++|..+.+
T Consensus       189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  227 (234)
T TIGR02521       189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGA  227 (234)
T ss_pred             HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4444444333 12233333333344444444444444333

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.44  E-value=9.2e-11  Score=119.55  Aligned_cols=249  Identities=13%  Similarity=0.079  Sum_probs=145.1

Q ss_pred             CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH---------cCChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 043068          172 NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK---------MGMIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKG  240 (526)
Q Consensus       172 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g  240 (526)
                      +.+++|.+.|++.++..  |.+...|..+..++..         .+++++|...+++. ...| +...+..+...+...|
T Consensus       275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence            34667777777777665  5556666655554432         23366777777665 3333 4556666666777777


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHH
Q 043068          241 ELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLR  320 (526)
Q Consensus       241 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  320 (526)
                      ++++|...|++..+.+.. +...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++
T Consensus       353 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        353 EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            777777777777766322 45566666777777777777777777776654 2223333334445556677777777777


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHcccC-CCC
Q 043068          321 NVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV-FSFNAVFRILVENGELDRAILLLKQMPQM-DCL  398 (526)
Q Consensus       321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~  398 (526)
                      ++.+...+-+...+..+..++...|+.++|...+.++...  .|+. ...+.+...|+..|  ++|...++.+.+. ...
T Consensus       431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~  506 (553)
T PRK12370        431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI  506 (553)
T ss_pred             HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence            7665532224445666666777777777777777776544  3332 23344444555555  3666666655441 122


Q ss_pred             cCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 043068          399 PNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSG  432 (526)
Q Consensus       399 p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~  432 (526)
                      +....+..++.++   .|+-+.+..+ +++.+.|
T Consensus       507 ~~~~~~~~~~~~~---~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        507 DNNPGLLPLVLVA---HGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             hcCchHHHHHHHH---HhhhHHHHHH-HHhhccc
Confidence            3333334444333   2555555554 6666554

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.43  E-value=2.5e-08  Score=95.94  Aligned_cols=405  Identities=10%  Similarity=0.099  Sum_probs=268.4

Q ss_pred             hHHHHHHHHHhCCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 043068           94 CYTAITDVLLSHSLISIAASLLKNSNK-----LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVL  168 (526)
Q Consensus        94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~  168 (526)
                      .|...+..+.++++....+..|++...     .....|...+......|-++.++.+|.+..+..    +..-+-.+..+
T Consensus       104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L  179 (835)
T KOG2047|consen  104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYL  179 (835)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHH
Confidence            366777788899999999988887542     234478888888888999999999999988755    33466778888


Q ss_pred             HhcCChhHHHHHHHHHHHcCC-----CCCCHHHHHHHHHHHHHcCCh---hhHHHHHHhC-CCCCCH--HHHHHHHHHHH
Q 043068          169 VRVNSIKLAEEFFHQIVKENV-----VPPDVSTYTTMIRGYCKMGMI---ENAKKVFDVM-TVKPNL--LAYNTMINGFC  237 (526)
Q Consensus       169 ~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p~~--~~~~~li~~~~  237 (526)
                      ++.+++++|.+.+..++....     -+.+...|..+.....+..+.   -.+..+++.+ +.-+|.  ..|..|.+-|.
T Consensus       180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI  259 (835)
T KOG2047|consen  180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI  259 (835)
T ss_pred             HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence            999999999999988764321     156777888888877775443   3345556655 333453  47899999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHcC----
Q 043068          238 KKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCING----------------------RVDEAKMLMAKMRLNG----  291 (526)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------------------~~~~a~~~~~~~~~~~----  291 (526)
                      +.|++++|.++|++.++.  ..+..-|+.+.++|+.-.                      +++-....|+.+...+    
T Consensus       260 r~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l  337 (835)
T KOG2047|consen  260 RSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL  337 (835)
T ss_pred             HhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence            999999999999998876  224444555555554321                      1222333344433221    


Q ss_pred             -------CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068          292 -------FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNP------DVKSYEVVINGFCKIGKSDEAISLLKEMR  358 (526)
Q Consensus       292 -------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~  358 (526)
                             -+.++..|..-+.  +..|+..+-...|.+.... +.|      -...|..+.+.|-..|+.+.|..+|++..
T Consensus       338 NsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~  414 (835)
T KOG2047|consen  338 NSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT  414 (835)
T ss_pred             HHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence                   1223333333322  2356677777777777654 222      23468889999999999999999999988


Q ss_pred             HCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHcccCC-----------CCc------CHHHHHHHHHHHHhcCCCH
Q 043068          359 ARGLKPT---VFSFNAVFRILVENGELDRAILLLKQMPQMD-----------CLP------NFVSYNTIICGLCMAKGRM  418 (526)
Q Consensus       359 ~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----------~~p------~~~~~~~ll~~~~~~~g~~  418 (526)
                      +...+-=   ..+|.....+=.+..+++.|+++.+......           .++      +...|...++.. ...|-+
T Consensus       415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle-Es~gtf  493 (835)
T KOG2047|consen  415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE-ESLGTF  493 (835)
T ss_pred             cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH-HHhccH
Confidence            6543211   2456666666678889999999988775411           111      122344444432 335888


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHHHHHHHHhcCccchh
Q 043068          419 QDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISR  498 (526)
Q Consensus       419 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  498 (526)
                      +....+++++++..+. ++.+.-.....+..+.-++++.+++++    |+...+..+.+.....=+.-+..+-|+...|+
T Consensus       494 estk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YEr----gI~LFk~p~v~diW~tYLtkfi~rygg~klEr  568 (835)
T KOG2047|consen  494 ESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYER----GISLFKWPNVYDIWNTYLTKFIKRYGGTKLER  568 (835)
T ss_pred             HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHc----CCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence            8999999999998776 666666666667778889999998865    44444444554433333334444556655544


Q ss_pred             HHHHHHHHHHHHHHHhcCCccc
Q 043068          499 FVFVHQVVVIMERTVEDGKRSE  520 (526)
Q Consensus       499 ~~~~~~~~~~~~~~~~~g~~~~  520 (526)
                            +-.+.++|++ ||+++
T Consensus       569 ------aRdLFEqaL~-~Cpp~  583 (835)
T KOG2047|consen  569 ------ARDLFEQALD-GCPPE  583 (835)
T ss_pred             ------HHHHHHHHHh-cCCHH
Confidence                  4567778876 88765

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.43  E-value=1.8e-10  Score=104.22  Aligned_cols=197  Identities=15%  Similarity=0.163  Sum_probs=123.0

Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-C-CCCCHHHHHHHHHH
Q 043068          158 LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-T-VKPNLLAYNTMING  235 (526)
Q Consensus       158 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~li~~  235 (526)
                      ...+..+...+...|++++|.+.+++..+..  |.+...+..+...+...|++++|.+.+++. . .+.+...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            4556667777777888888888888777664  556677777777777777777777777665 2 13344566666677


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHH
Q 043068          236 FCKKGELEEAKKCMNEMMNRGCR-PNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQ  314 (526)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  314 (526)
                      +...|++++|.+.|++..+.... .....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence            77777777777777777654211 123345555566666666666666666665543 3344455556666666666666


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068          315 AVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMR  358 (526)
Q Consensus       315 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  358 (526)
                      |...+++..+.. ..+...+..++..+...|+.++|..+.+.+.
T Consensus       188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            666666655542 2244445555555556666666666555554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.41  E-value=4.4e-10  Score=114.57  Aligned_cols=267  Identities=12%  Similarity=0.100  Sum_probs=170.1

Q ss_pred             CCCHHHHHHHHHHHHH-----cCChhhHHHHHHhC-CCCCC-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHHH
Q 043068          191 PPDVSTYTTMIRGYCK-----MGMIENAKKVFDVM-TVKPN-LLAYNTMINGFC---------KKGELEEAKKCMNEMMN  254 (526)
Q Consensus       191 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~  254 (526)
                      +.+...|...+++...     .+++++|.+.|++. ...|+ ...|..+..++.         ..+++++|...+++..+
T Consensus       253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~  332 (553)
T PRK12370        253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE  332 (553)
T ss_pred             CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence            3455556555555322     13456788888776 44554 445555554443         22447888888888887


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043068          255 RGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSY  334 (526)
Q Consensus       255 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  334 (526)
                      .... +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..+.++. +...+
T Consensus       333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~  409 (553)
T PRK12370        333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG  409 (553)
T ss_pred             cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence            7433 56777777777888888888888888888765 556677778888888888888888888888887544 23333


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHH-HHHh
Q 043068          335 EVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIIC-GLCM  413 (526)
Q Consensus       335 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~-~~~~  413 (526)
                      ..++..+...|++++|+..++++.+...+-+...+..+..++...|+.++|...++++...  .|+.......+. .++.
T Consensus       410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~  487 (553)
T PRK12370        410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQ  487 (553)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhc
Confidence            3344456667888888888888765531213445666777778888888888888887653  355444444443 3333


Q ss_pred             cCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          414 AKGRMQDVEDLVDRMIRSGH-NLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       414 ~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                      . |  ++|...++.+.+..- .+....+  +-..|.-.|+.+.+... +++.+.+.
T Consensus       488 ~-g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~  537 (553)
T PRK12370        488 N-S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDN  537 (553)
T ss_pred             c-H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccch
Confidence            2 4  577777766655311 1111112  33345556777766666 77777664

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=5.4e-10  Score=105.74  Aligned_cols=276  Identities=13%  Similarity=0.109  Sum_probs=220.8

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY  204 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~  204 (526)
                      .......-+...+++.+..++++...+..+ +....+..-|..+...|+..+-..+=.++++..  |....+|-++.--|
T Consensus       246 ll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~YY  322 (611)
T KOG1173|consen  246 LLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGCYY  322 (611)
T ss_pred             HHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHHHH
Confidence            444556667788999999999999887775 667777777778889999988888888888885  88889999999999


Q ss_pred             HHcCChhhHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHH
Q 043068          205 CKMGMIENAKKVFDVM-TVKPN-LLAYNTMINGFCKKGELEEAKKCMNEMMNR--GCRPNELTYNAMIYGLCINGRVDEA  280 (526)
Q Consensus       205 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a  280 (526)
                      .-.|+..+|.+.|.+. .+.|. ...|-.....|.-.|..|+|+..|...-+.  |.. -+..|  +.--|.+.++.+.|
T Consensus       323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n~kLA  399 (611)
T KOG1173|consen  323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNNLKLA  399 (611)
T ss_pred             HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhccHHHH
Confidence            9999999999999987 33333 457888899999999999999998877654  322 12223  33467888999999


Q ss_pred             HHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043068          281 KMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA----N--MNPDVKSYEVVINGFCKIGKSDEAISLL  354 (526)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~  354 (526)
                      .++|.+..... |.|+.+.+-+.-.....+.+.+|..+|+..+..    +  ...-..+++.|..+|.+.+.+++|+..+
T Consensus       400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~  478 (611)
T KOG1173|consen  400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY  478 (611)
T ss_pred             HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence            99999988764 678888888888888899999999999887732    1  1114456888999999999999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 043068          355 KEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICG  410 (526)
Q Consensus       355 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~  410 (526)
                      ++..... +-+..++.++.-.|...|+++.|.+.|.+...  +.|+..+-..++..
T Consensus       479 q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~  531 (611)
T KOG1173|consen  479 QKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL  531 (611)
T ss_pred             HHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence            9988763 44788999999999999999999999999887  56888777777654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=2e-09  Score=100.08  Aligned_cols=195  Identities=10%  Similarity=0.087  Sum_probs=147.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043068          305 GLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDR  384 (526)
Q Consensus       305 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  384 (526)
                      .+.-.|+.-.|..-|+..+.....++ ..|.-+..+|...++.++.++.|.+....+.. ++.+|..-.+.+.-.+++++
T Consensus       335 F~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~  412 (606)
T KOG0547|consen  335 FHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE  412 (606)
T ss_pred             hhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence            34557889999999999998865533 33778888999999999999999999887533 56678887888888899999


Q ss_pred             HHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043068          385 AILLLKQMPQMDCLPN-FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEM  463 (526)
Q Consensus       385 a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  463 (526)
                      |..=|++.+.  +.|+ ...|-.+-.+.++. +++++++..|++..++ ++--+..|+.....+...+++++|.+.|+..
T Consensus       413 A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~-~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a  488 (606)
T KOG0547|consen  413 AIADFQKAIS--LDPENAYAYIQLCCALYRQ-HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA  488 (606)
T ss_pred             HHHHHHHHhh--cChhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence            9999999988  4455 45666676677776 8999999999999886 6668899999999999999999999999999


Q ss_pred             HHcCCCccchhhhHHH-HHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHh
Q 043068          464 VTKKGRLLKLKNFLTR-VVDALLLMWIVTGGSWISRFVFVHQVVVIMERTVE  514 (526)
Q Consensus       464 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  514 (526)
                      ++.-++...+..--+- +..+.+..      .|.   +.+.+++.++++|.+
T Consensus       489 i~LE~~~~~~~v~~~plV~Ka~l~~------qwk---~d~~~a~~Ll~KA~e  531 (606)
T KOG0547|consen  489 IELEPREHLIIVNAAPLVHKALLVL------QWK---EDINQAENLLRKAIE  531 (606)
T ss_pred             HhhccccccccccchhhhhhhHhhh------chh---hhHHHHHHHHHHHHc
Confidence            9887752211111111 11222211      154   556677777777763

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.36  E-value=8.3e-08  Score=92.48  Aligned_cols=223  Identities=14%  Similarity=0.143  Sum_probs=124.2

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHHc
Q 043068          239 KGELEEAKKCMNEMMNRGCRPN------ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN---VSTHKSMLKGLCVV  309 (526)
Q Consensus       239 ~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~  309 (526)
                      .|+..+-...|.+..+. +.|.      ...|..+...|-..|+++.|..+|++..+-.++--   ..+|..-..+-.+.
T Consensus       360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh  438 (835)
T KOG2047|consen  360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH  438 (835)
T ss_pred             cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence            45555666666666554 2221      23466677777777888888888877765433221   34555555666667


Q ss_pred             CCHHHHHHHHHHHHHcCCC-----------------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043068          310 GKFDQAVGYLRNVMEANMN-----------------PDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAV  372 (526)
Q Consensus       310 g~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  372 (526)
                      .+++.|+++++......-.                 .+...|...++.-...|-++....+++++.+..+. ++...-..
T Consensus       439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~Ny  517 (835)
T KOG2047|consen  439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINY  517 (835)
T ss_pred             hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence            7777777777665432111                 12344555566666667777777777777765443 22222223


Q ss_pred             HHHHHHcCCHHHHHHHHHHcccCCCCcCH-HHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHH
Q 043068          373 FRILVENGELDRAILLLKQMPQMDCLPNF-VSYNTIICGLCMAK--GRMQDVEDLVDRMIRSGHNLDFTMYSCL--LKGY  447 (526)
Q Consensus       373 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~--g~~~~a~~~~~~~~~~~~~p~~~~~~~l--~~~~  447 (526)
                      ...+-.+.-++++.+++++-+..--.|+. ..|+..+.-+.+..  -+++.|..+|++.++ |.+|...-+-.|  ...=
T Consensus       518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE  596 (835)
T KOG2047|consen  518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE  596 (835)
T ss_pred             HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence            33344556677777777776653223443 23444443332221  357777777877777 555543322222  2222


Q ss_pred             HhCCCHHHHHHHHHHHH
Q 043068          448 CEEGNVENVMQIAHEMV  464 (526)
Q Consensus       448 ~~~g~~~~a~~~~~~m~  464 (526)
                      .+.|-...|+.++++..
T Consensus       597 Ee~GLar~amsiyerat  613 (835)
T KOG2047|consen  597 EEHGLARHAMSIYERAT  613 (835)
T ss_pred             HHhhHHHHHHHHHHHHH
Confidence            34577777777777743

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.36  E-value=2.4e-10  Score=100.82  Aligned_cols=235  Identities=9%  Similarity=0.036  Sum_probs=192.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH
Q 043068          229 YNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV  308 (526)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  308 (526)
                      -+-+..+|.+.|-+.+|.+.|+.-++.  .|-+.||..|-++|.+..+++.|+.++.+-.+.- +.++....-+.+.+-.
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence            357889999999999999999988876  5566788889999999999999999999887653 5555555668888888


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043068          309 VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILL  388 (526)
Q Consensus       309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  388 (526)
                      .++.++|.++|+.+.+.... ++.....+...|.-.++++-|+..++++.+.|+. +...|+.+.-+|.-.+++|-++.-
T Consensus       303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence            99999999999999987543 6777777888888999999999999999999976 788899999999999999999999


Q ss_pred             HHHcccCCCCcCH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043068          389 LKQMPQMDCLPNF--VSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTK  466 (526)
Q Consensus       389 ~~~~~~~~~~p~~--~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  466 (526)
                      |++....--.|+.  ..|..+-.... ..|++.-|.+.|+-.+..+.. +...++.|.-.-.+.|++++|..+++.....
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV-~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAV-TIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEE-eccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            9887764333432  23443333323 349999999999999887655 7789999999999999999999999998888


Q ss_pred             CCCc
Q 043068          467 KGRL  470 (526)
Q Consensus       467 ~~~~  470 (526)
                      .+.-
T Consensus       459 ~P~m  462 (478)
T KOG1129|consen  459 MPDM  462 (478)
T ss_pred             Cccc
Confidence            7743

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.34  E-value=1.1e-10  Score=102.93  Aligned_cols=228  Identities=14%  Similarity=0.078  Sum_probs=165.8

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 043068          127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK  206 (526)
Q Consensus       127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~  206 (526)
                      +.+.++|.+.|.+.+|.+-|+...+..  |-+.+|-.|-++|.+..++..|+.+|.+-++.-  |.|+....-+.+.+-.
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHHH
Confidence            577888888888888888888776554  556677778888888888888888888887764  6666666677778888


Q ss_pred             cCChhhHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043068          207 MGMIENAKKVFDVM-T-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLM  284 (526)
Q Consensus       207 ~g~~~~A~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~  284 (526)
                      .++.++|.++++.. + .+-++.....+...|.-.++.+-|+..|+++++.|+. +...|..+.-+|.-.++++-++.-|
T Consensus       303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence            88888888888776 2 2335556666677777788888888888888888877 6777777777777788888888888


Q ss_pred             HHHHHcCCCCC--HHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068          285 AKMRLNGFKDN--VSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR  360 (526)
Q Consensus       285 ~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  360 (526)
                      ++....--.|+  ..+|-.+.......|++..|.+.|+-....+.. +...+|.|.-.-.+.|++++|..++......
T Consensus       382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            77765433333  235556666666777777777777776666544 5566777776677777777777777766554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.33  E-value=8.4e-09  Score=101.84  Aligned_cols=292  Identities=13%  Similarity=0.140  Sum_probs=188.6

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC-
Q 043068          130 IKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG-  208 (526)
Q Consensus       130 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-  208 (526)
                      ...+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+  |.|..-|..+..+..-.. 
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~   87 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ   87 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence            44557788888888888775433 32335566677788888899999999999988887  667777777776663332 


Q ss_pred             ----ChhhHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043068          209 ----MIENAKKVFDVM-TVKPNLLAYNTMINGFCKKGELE-EAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKM  282 (526)
Q Consensus       209 ----~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~  282 (526)
                          +.+...++++++ ..-|.......+.-.+.....+. .+...+..+..+|++   .+|+.|-..|....+..-..+
T Consensus        88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~  164 (517)
T PF12569_consen   88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES  164 (517)
T ss_pred             cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence                456666777766 22233332222222222222232 344556667777765   356666666665555555555


Q ss_pred             HHHHHHHc----C----------CCCCH--HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043068          283 LMAKMRLN----G----------FKDNV--STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGK  346 (526)
Q Consensus       283 ~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  346 (526)
                      ++......    +          -+|+.  .++.-+...|-..|++++|++++++.+++.+. .+..|..-...+-+.|+
T Consensus       165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~  243 (517)
T PF12569_consen  165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGD  243 (517)
T ss_pred             HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCC
Confidence            55554322    1          12333  34456677888899999999999988887533 46778888888999999


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHH------HH--HHHHHHHHhcCCCH
Q 043068          347 SDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFV------SY--NTIICGLCMAKGRM  418 (526)
Q Consensus       347 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~--~~ll~~~~~~~g~~  418 (526)
                      +.+|.+.++..+..... |-..=+..+..+.+.|++++|.+++......+..|-..      .|  .-...++.+. |++
T Consensus       244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~-~~~  321 (517)
T PF12569_consen  244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ-GDY  321 (517)
T ss_pred             HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH-hhH
Confidence            99999999988877433 55555667778888999999999888887655433221      11  1122344554 788


Q ss_pred             HHHHHHHHHHHH
Q 043068          419 QDVEDLVDRMIR  430 (526)
Q Consensus       419 ~~a~~~~~~~~~  430 (526)
                      ..|++.|....+
T Consensus       322 ~~ALk~~~~v~k  333 (517)
T PF12569_consen  322 GLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHHH
Confidence            777776665544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.32  E-value=3.3e-07  Score=88.67  Aligned_cols=388  Identities=14%  Similarity=0.092  Sum_probs=215.7

Q ss_pred             HhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHcCCCH
Q 043068           63 YEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNK---LSDFFISKLIKAYGDRGNV  139 (526)
Q Consensus        63 ~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~  139 (526)
                      ...|+-++|....+..++.++      .+..||..++-++-..+.+++|...++.+..   .+...+.-|.-.=++.|++
T Consensus        52 ~~lg~~~ea~~~vr~glr~d~------~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~  125 (700)
T KOG1156|consen   52 NCLGKKEEAYELVRLGLRNDL------KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY  125 (700)
T ss_pred             hcccchHHHHHHHHHHhccCc------ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence            345677777777776665332      2344677777666667777777777775442   2334444444444455666


Q ss_pred             HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH------HHHHHcCChhhH
Q 043068          140 KAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMI------RGYCKMGMIENA  213 (526)
Q Consensus       140 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li------~~~~~~g~~~~A  213 (526)
                      +.......+..+..+ .....|..+..++.-.|+...|..+.++..+...-.|+...+....      ....+.|..++|
T Consensus       126 ~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~a  204 (700)
T KOG1156|consen  126 EGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKA  204 (700)
T ss_pred             hhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence            666665555554432 2244566666666667777777777777665442234544443322      233455666666


Q ss_pred             HHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHcCCHHHHH-HHHHHHHH
Q 043068          214 KKVFDVMT--VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIY-GLCINGRVDEAK-MLMAKMRL  289 (526)
Q Consensus       214 ~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~a~-~~~~~~~~  289 (526)
                      .+.+....  +......-.+-...+.+.+++++|..+|..++.+  .||...|...+. ++.+-.+.-++. .+|....+
T Consensus       205 le~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~  282 (700)
T KOG1156|consen  205 LEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSE  282 (700)
T ss_pred             HHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence            66665541  1111222334455666777777777777777766  455555544333 332233333333 44444433


Q ss_pred             cCCCCCHHhHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CC---
Q 043068          290 NGFKDNVSTHKS-MLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA----RG---  361 (526)
Q Consensus       290 ~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~---  361 (526)
                      .  .|....-.. =++......-.+..-+++..+.+.|+++   ++..+...|-.-...+-..++.-.+..    .|   
T Consensus       283 ~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~  357 (700)
T KOG1156|consen  283 K--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFN  357 (700)
T ss_pred             c--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCC
Confidence            2  111111110 0111111122333444555666666543   233444444322222211111111111    11   


Q ss_pred             -------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHC
Q 043068          362 -------LKPTVF--SFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTI-ICGLCMAKGRMQDVEDLVDRMIRS  431 (526)
Q Consensus       362 -------~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~~g~~~~a~~~~~~~~~~  431 (526)
                             -+|+..  ++-.++..+-+.|+++.|..+++..+.+  .|+.+-.-.+ .+.+ ...|.+++|..++++..+.
T Consensus       358 ~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~-kH~G~l~eAa~~l~ea~el  434 (700)
T KOG1156|consen  358 FLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIF-KHAGLLDEAAAWLDEAQEL  434 (700)
T ss_pred             cccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHH-HhcCChHHHHHHHHHHHhc
Confidence                   134443  4455677888999999999999999985  4776544433 3444 4459999999999999987


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          432 GHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       432 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                      +. +|..+-..-+.-..++.+.++|.++.......|.
T Consensus       435 D~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  435 DT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             cc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence            53 4666655666777889999999999999988885

>PF13041 PPR_2: PPR repeat family

Probab=99.32  E-value=5.3e-12  Score=82.76  Aligned_cols=50  Identities=50%  Similarity=1.013  Sum_probs=38.0

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 043068          224 PNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCI  273 (526)
Q Consensus       224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  273 (526)
                      ||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67777777777777777777777777777777777777777777777763

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=1.1e-07  Score=86.86  Aligned_cols=293  Identities=12%  Similarity=0.078  Sum_probs=209.6

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 043068          171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLL-AYNTMINGFCKKGELEEAKKC  248 (526)
Q Consensus       171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~li~~~~~~g~~~~A~~~  248 (526)
                      .++...|...+--+.....++.|+.....+..++...|+.++|+..|++. -+.|+.. ......-.+.+.|++++...+
T Consensus       209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L  288 (564)
T KOG1174|consen  209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSAL  288 (564)
T ss_pred             hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence            45555555555444444446788888999999999999999999999887 3344332 233334445678888888888


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 043068          249 MNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN  328 (526)
Q Consensus       249 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  328 (526)
                      ...+....-. ....|-.-........+++.|+.+-++.++.. +.+...+..-...+...|+.++|.-.|+......+.
T Consensus       289 ~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~  366 (564)
T KOG1174|consen  289 MDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY  366 (564)
T ss_pred             HHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence            8887765211 22233333344456678889999988887654 455566666667788889999999999988776433


Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHcccCCCCcCHHHHHH
Q 043068          329 PDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVF-RILV-ENGELDRAILLLKQMPQMDCLPNFVSYNT  406 (526)
Q Consensus       329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~  406 (526)
                       +...|.-|+..|...|.+.+|...-+...+. +.-+..+...+- ..|. ....-++|.+++++...  +.|+..---.
T Consensus       367 -rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~  442 (564)
T KOG1174|consen  367 -RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVN  442 (564)
T ss_pred             -hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHH
Confidence             7889999999999999999988877765543 122333433331 1221 22334788899988887  5588665555


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068          407 IICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLL  471 (526)
Q Consensus       407 ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~  471 (526)
                      .+.-+|...|+.+++..++++.+.  ..||....+.|.+.+.....+++|+..|...+..+|...
T Consensus       443 ~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~  505 (564)
T KOG1174|consen  443 LIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK  505 (564)
T ss_pred             HHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence            666667777999999999999886  577999999999999999999999999999999988554

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=3.6e-08  Score=93.71  Aligned_cols=287  Identities=10%  Similarity=0.049  Sum_probs=213.7

Q ss_pred             CCCHHHHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043068          191 PPDVSTYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMI  268 (526)
Q Consensus       191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (526)
                      ..+.........-+...+++.+..++++..  ..+++...+..-|.++...|+..+-..+=.+|.+.- +-...+|-++.
T Consensus       241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg  319 (611)
T KOG1173|consen  241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG  319 (611)
T ss_pred             hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence            445666666777778889999999988887  345666677777788889999888888888888773 33678888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 043068          269 YGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSD  348 (526)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  348 (526)
                      -.|.-.|+..+|.++|.+..... +.-...|..+...|.-.|..|+|...+...-+.-.. ....+--+.--|.+.++.+
T Consensus       320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~k  397 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLK  397 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHH
Confidence            88888899999999999876543 233457888999999999999999988877654111 1112334455678889999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccC--CCCcC----HHHHHHHHHHHHhcCCCHHHHH
Q 043068          349 EAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQM--DCLPN----FVSYNTIICGLCMAKGRMQDVE  422 (526)
Q Consensus       349 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~----~~~~~~ll~~~~~~~g~~~~a~  422 (526)
                      .|.+.|.+.... .+-|+...+-+.....+.+.+.+|..+|+.....  .+.+.    ..+++.|-.. ++..+++++|+
T Consensus       398 LAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~-~Rkl~~~~eAI  475 (611)
T KOG1173|consen  398 LAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA-YRKLNKYEEAI  475 (611)
T ss_pred             HHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH-HHHHhhHHHHH
Confidence            999999988765 2336677777777777788999999999877631  11122    2344555544 45569999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHHH
Q 043068          423 DLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDA  483 (526)
Q Consensus       423 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~  483 (526)
                      ..+++.+....+ +..++.++.-.|...|+++.|.+.|.+.+...+...-+...+...++.
T Consensus       476 ~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  476 DYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            999999987655 889999999999999999999999999999988665555555444443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.28  E-value=2.1e-09  Score=104.71  Aligned_cols=234  Identities=16%  Similarity=0.212  Sum_probs=100.5

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCCCCCHHHH-HHHHHHHHHcCChhhHHHHHHhC--------C-CC
Q 043068          159 YSYNSLLGVLVRVNSIKLAEEFFHQIVKE-----NVVPPDVSTY-TTMIRGYCKMGMIENAKKVFDVM--------T-VK  223 (526)
Q Consensus       159 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~--------~-~~  223 (526)
                      .+...+...|...|+++.|+.+++..++.     |...|.+.+. +.+...|...+++++|..+|+++        | ..
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34444555666666666666666555543     1012222222 22445555555555555555544        1 11


Q ss_pred             CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC
Q 043068          224 PN-LLAYNTMINGFCKKGELEEAKKCMNEMMNR-----GCR-PNE-LTYNAMIYGLCINGRVDEAKMLMAKMRLN---GF  292 (526)
Q Consensus       224 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~  292 (526)
                      |. ..+++.|...|++.|++++|...+++..+.     |.. |.. ..++.+...|+..+++++|..++....+.   -.
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            11 224455555555555555555554443321     111 111 11333444455555555555555443321   00


Q ss_pred             -CC---CHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-
Q 043068          293 -KD---NVSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN----M---NPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR-  360 (526)
Q Consensus       293 -~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-  360 (526)
                       +.   -..+++.+...|...|++++|.+++++++...    .   .-....++.+...|.+.+.+++|.++|.+.... 
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence             01   12344455555555555555555555444320    0   001223444444555555555555444443211 


Q ss_pred             ---CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 043068          361 ---GL-KPT-VFSFNAVFRILVENGELDRAILLLKQM  392 (526)
Q Consensus       361 ---~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~  392 (526)
                         |. .|+ ..+|..|...|.+.|++++|.++.+..
T Consensus       440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~  476 (508)
T KOG1840|consen  440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV  476 (508)
T ss_pred             HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence               11 011 234445555555555555555544443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.27  E-value=2.4e-09  Score=104.40  Aligned_cols=234  Identities=16%  Similarity=0.151  Sum_probs=178.1

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhc-----CC-CCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCC-C
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQI-----EN-GACLY-SYNSLLGVLVRVNSIKLAEEFFHQIVKE-----NVV-P  191 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~-~  191 (526)
                      +...|...|...|+++.|..+++...+.     |. .|.+. ..+.+...|...+++.+|..+|+++...     |.. |
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            5666999999999999999999988765     10 13333 3445778899999999999999998752     211 2


Q ss_pred             CCHHHHHHHHHHHHHcCChhhHHHHHHhC--------C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC
Q 043068          192 PDVSTYTTMIRGYCKMGMIENAKKVFDVM--------T-VKPNLL-AYNTMINGFCKKGELEEAKKCMNEMMNR---GCR  258 (526)
Q Consensus       192 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~  258 (526)
                      .-..+++.|..+|.+.|++++|...+++.        + ..|.+. .++.++..++..+++++|..++++..+.   -+.
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g  360 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG  360 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence            23467888889999999999998888765        1 223333 4667788899999999999999876553   122


Q ss_pred             CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C--CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHH---
Q 043068          259 PN----ELTYNAMIYGLCINGRVDEAKMLMAKMRLN-----G--FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVME---  324 (526)
Q Consensus       259 p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---  324 (526)
                      ++    ..+++.|...|...|++++|+++++++...     |  ..-....++.+...|.+.++..+|.++|.+...   
T Consensus       361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~  440 (508)
T KOG1840|consen  361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK  440 (508)
T ss_pred             ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            22    457899999999999999999999988643     1  122245677899999999999999988876543   


Q ss_pred             -cCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068          325 -ANMN-P-DVKSYEVVINGFCKIGKSDEAISLLKEMR  358 (526)
Q Consensus       325 -~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~  358 (526)
                       .|+. | ...+|..|...|...|++++|+++.+.+.
T Consensus       441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence             2322 2 34689999999999999999999998875

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.27  E-value=5.3e-10  Score=110.88  Aligned_cols=248  Identities=16%  Similarity=0.199  Sum_probs=150.9

Q ss_pred             HHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCC
Q 043068          145 WFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKP  224 (526)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p  224 (526)
                      ++..+...|+.|+..+|..+|.-||..|+.+.|- +|.-|.-+. .|.+...++.++.+....++.+.+.        .|
T Consensus        12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk--------ep   81 (1088)
T KOG4318|consen   12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK--------EP   81 (1088)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC--------CC
Confidence            4455666777788888888888888888887777 777776555 5667777888887777777777665        56


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHH-HHH-------cCCCCCHHHH--------------HHHHHHHHHcCCHHHHHH
Q 043068          225 NLLAYNTMINGFCKKGELEEAKKCMNE-MMN-------RGCRPNELTY--------------NAMIYGLCINGRVDEAKM  282 (526)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~-------~g~~p~~~~~--------------~~li~~~~~~g~~~~a~~  282 (526)
                      ...+|..|..+|...||+.. ++..++ |..       .|+..-...+              ...+.-..-.|-++.+++
T Consensus        82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk  160 (1088)
T KOG4318|consen   82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK  160 (1088)
T ss_pred             chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence            77788888888888877654 222221 211       1211111111              112222333445555555


Q ss_pred             HHHHHHHcC-CCCCHHhHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068          283 LMAKMRLNG-FKDNVSTHKSMLKGLCVV-GKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR  360 (526)
Q Consensus       283 ~~~~~~~~~-~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  360 (526)
                      ++..+.... ..|..    .+++-+... ..+++-..+.+...+   .|+..+|..++..-...|+.+.|..++.+|.+.
T Consensus       161 ll~~~Pvsa~~~p~~----vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~  233 (1088)
T KOG4318|consen  161 LLAKVPVSAWNAPFQ----VFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK  233 (1088)
T ss_pred             HHhhCCcccccchHH----HHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence            554442111 01111    122222222 223333333333332   467778888888877888888888888888888


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh
Q 043068          361 GLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCM  413 (526)
Q Consensus       361 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~  413 (526)
                      |++.+...|..|+.+   .++...+..+++.|.+.|+.|+..|+...+-....
T Consensus       234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~  283 (1088)
T KOG4318|consen  234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS  283 (1088)
T ss_pred             CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence            887777777777766   67777777778888888888888887776655433

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.26  E-value=4.1e-08  Score=97.02  Aligned_cols=259  Identities=15%  Similarity=0.166  Sum_probs=158.9

Q ss_pred             HHHHHHHcCChhhHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHc--
Q 043068          200 MIRGYCKMGMIENAKKVFDVM-TVKPN-LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTY-NAMIYGLCIN--  274 (526)
Q Consensus       200 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~--  274 (526)
                      ....+...|++++|++.++.- ..-+| ..........+.+.|+.++|..+|..+++.+  |+...| ..+..+..-.  
T Consensus        10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~   87 (517)
T PF12569_consen   10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ   87 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence            344556677777777777665 22233 3445566677777777777777777777763  344444 3343333221  


Q ss_pred             ---CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 043068          275 ---GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKF-DQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEA  350 (526)
Q Consensus       275 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  350 (526)
                         .+.+....+|+++.+.-  |.......+.-.+.....+ ..+..++..+...|++   .+|+.+-..|....+..-.
T Consensus        88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i  162 (517)
T PF12569_consen   88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII  162 (517)
T ss_pred             cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence               24566667777665442  3322222222222221222 2344555566666654   2355555555544444444


Q ss_pred             HHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc
Q 043068          351 ISLLKEMRAR----G----------LKPTV--FSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMA  414 (526)
Q Consensus       351 ~~~~~~m~~~----~----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~  414 (526)
                      .+++......    +          -.|+.  .++.-+...|...|++++|++++++.+++  .|+..-+..+-.-+.+.
T Consensus       163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh  240 (517)
T PF12569_consen  163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH  240 (517)
T ss_pred             HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence            5555554322    1          12333  34456677788899999999999988885  47755444444444455


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          415 KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       415 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                      .|++.+|.+.++...+.+.. |..+-+..+..+.+.|+.++|.+++......+.
T Consensus       241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~  293 (517)
T PF12569_consen  241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDV  293 (517)
T ss_pred             CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence            69999999999999887766 777777788888999999999999988877664

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13041 PPR_2: PPR repeat family

Probab=99.26  E-value=1.6e-11  Score=80.51  Aligned_cols=49  Identities=45%  Similarity=0.922  Sum_probs=25.1

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043068          329 PDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILV  377 (526)
Q Consensus       329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~  377 (526)
                      ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            3445555555555555555555555555555555555555555555443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.25  E-value=9.2e-09  Score=96.11  Aligned_cols=220  Identities=14%  Similarity=0.024  Sum_probs=156.4

Q ss_pred             cCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHH
Q 043068          239 KGELEEAKKCMNEMMNRG-CRPN--ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQA  315 (526)
Q Consensus       239 ~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  315 (526)
                      .+..+.++.-+.+++... ..|+  ...|..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence            346677778887777642 2222  3457777788889999999999999988765 56788899999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccC
Q 043068          316 VGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQM  395 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  395 (526)
                      ...|++..+..+. +..+|..+...+...|++++|++.|++..+.  .|+..........+...++.++|.+.|.+....
T Consensus       118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence            9999999887544 5677888888888999999999999998876  444332222223345567899999999765532


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC---CC--C-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          396 DCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS---GH--N-LDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       396 ~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~---~~--~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                       ..|+...+ .+. .+ . .|+..++ +.++.+.+.   .+  . .....|..+...+.+.|++++|+..|++.++.++
T Consensus       195 -~~~~~~~~-~~~-~~-~-lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        195 -LDKEQWGW-NIV-EF-Y-LGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             -CCccccHH-HHH-HH-H-ccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence             22332222 222 22 2 2555544 344544431   11  1 1345899999999999999999999999999886

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=2.2e-07  Score=85.06  Aligned_cols=271  Identities=13%  Similarity=0.057  Sum_probs=206.4

Q ss_pred             CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHHH
Q 043068          154 NGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYNT  231 (526)
Q Consensus       154 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~  231 (526)
                      .+-++.....+.+.+...|+.++|+..|++....+  |-+........-.+.+.|+.+....+...+  ..+-+...|-.
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV  305 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV  305 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence            34568889999999999999999999999998765  555555566666678889998888777766  22234555655


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068          232 MINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGK  311 (526)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  311 (526)
                      -+......++++.|+.+-++.++.... +...|-.-.+.+...+++++|.-.|+..+... +-+...|.-++..|...|+
T Consensus       306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~  383 (564)
T KOG1174|consen  306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR  383 (564)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence            666677789999999999998876433 45556555667888999999999999988764 5788999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHH-HHH-HhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 043068          312 FDQAVGYLRNVMEANMNPDVKSYEVVI-NGF-CKIGKSDEAISLLKEMRARGLKPTV-FSFNAVFRILVENGELDRAILL  388 (526)
Q Consensus       312 ~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~-~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~  388 (526)
                      +.+|.-.-+.....- .-+..+...+. ..+ ..-..-++|.++++.-...  .|+- ...+.+...|...|..+.++.+
T Consensus       384 ~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~L  460 (564)
T KOG1174|consen  384 FKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKL  460 (564)
T ss_pred             HHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHH
Confidence            999988777665541 22455554442 222 2223457899999887765  5653 3567778889999999999999


Q ss_pred             HHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC
Q 043068          389 LKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHN  434 (526)
Q Consensus       389 ~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~  434 (526)
                      ++....  ..||....+.|-+.+... +.+++|.+.|..++..+++
T Consensus       461 Le~~L~--~~~D~~LH~~Lgd~~~A~-Ne~Q~am~~y~~ALr~dP~  503 (564)
T KOG1174|consen  461 LEKHLI--IFPDVNLHNHLGDIMRAQ-NEPQKAMEYYYKALRQDPK  503 (564)
T ss_pred             HHHHHh--hccccHHHHHHHHHHHHh-hhHHHHHHHHHHHHhcCcc
Confidence            999887  568998888888776554 8999999999999886554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.22  E-value=1.5e-07  Score=91.29  Aligned_cols=195  Identities=14%  Similarity=0.078  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENG-ACL-YSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIR  202 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~  202 (526)
                      .+..+...+...|+.+.+.+.+.+..+.... .+. .........+...|++++|.+++++..+..  |.+...+.. ..
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~-~~   84 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL-HL   84 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-hH
Confidence            3444555555566666666666554433321 121 112222334556677888888877777664  555544442 21


Q ss_pred             HHH----HcCChhhHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 043068          203 GYC----KMGMIENAKKVFDVM-TVKPN-LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGR  276 (526)
Q Consensus       203 ~~~----~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  276 (526)
                      .+.    ..+..+.+.+.++.. +..|+ ......+...+...|++++|.+.+++..+.... +...+..+...+...|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~  163 (355)
T cd05804          85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGR  163 (355)
T ss_pred             HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCC
Confidence            222    234444444444432 22232 223344555666677777777777777665322 34555666666667777


Q ss_pred             HHHHHHHHHHHHHcCC-CCCH--HhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068          277 VDEAKMLMAKMRLNGF-KDNV--STHKSMLKGLCVVGKFDQAVGYLRNVM  323 (526)
Q Consensus       277 ~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~  323 (526)
                      +++|..++++...... .++.  ..|..+...+...|++++|..++++..
T Consensus       164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~  213 (355)
T cd05804         164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI  213 (355)
T ss_pred             HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            7777777766654321 1121  223345566666666666666666654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=1e-06  Score=84.42  Aligned_cols=122  Identities=16%  Similarity=0.073  Sum_probs=84.6

Q ss_pred             HHHHHHHHh--cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHH-HHHHHHHH
Q 043068           56 NIVTKVIYE--QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDF-FISKLIKA  132 (526)
Q Consensus        56 ~~l~~~l~~--~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~li~~  132 (526)
                      +++..+-..  ++++++|++.-..++...|++.      .++..-+-++++.++|++|..+++..+..... +| .+=.+
T Consensus        14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~------~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKA   86 (652)
T KOG2376|consen   14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDE------DAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKA   86 (652)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcH------hhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHH
Confidence            444444333  6789999999999988766443      23455556778889999999988876643222 11 12333


Q ss_pred             H--HcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 043068          133 Y--GDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKEN  188 (526)
Q Consensus       133 ~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  188 (526)
                      |  .+.+..++|+..++-...    .+..+...-...+.+.|++++|.++|+.+.+.+
T Consensus        87 Yc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~  140 (652)
T KOG2376|consen   87 YCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNN  140 (652)
T ss_pred             HHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            3  468899999998883221    234466666778889999999999999998776

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.18  E-value=2.7e-08  Score=92.94  Aligned_cols=147  Identities=15%  Similarity=0.068  Sum_probs=77.4

Q ss_pred             CHHHHHHHHHHHHhcCC-CC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHH
Q 043068          138 NVKAAIFWFHQAKQIEN-GA--CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAK  214 (526)
Q Consensus       138 ~~~~A~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  214 (526)
                      ..+.++.-+.++..... .|  ....|..+...+.+.|+.++|...|++.++..  |.+...|+.+...+...|++++|.
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            44455555555543221 11  12345555556666666666666666666654  555666666666666666666666


Q ss_pred             HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068          215 KVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMR  288 (526)
Q Consensus       215 ~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~  288 (526)
                      +.|++. .+.| +...|..+..++...|++++|++.|++..+.  .|+..........+...++.++|...+++..
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY  192 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            666655 3333 3445555666666666666666666666654  2222211111122233455666666665443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.18  E-value=3e-08  Score=83.87  Aligned_cols=208  Identities=14%  Similarity=0.075  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043068          263 TYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC  342 (526)
Q Consensus       263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~  342 (526)
                      +...|.-.|...|+...|..-+++.++.. +.+..++..+...|.+.|+.+.|.+.|++.+...+. +..+.|.....+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence            34455566777777777777777777665 555667777777777777777777777777776544 5566677777777


Q ss_pred             hcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCCHHH
Q 043068          343 KIGKSDEAISLLKEMRARGLKP-TVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN-FVSYNTIICGLCMAKGRMQD  420 (526)
Q Consensus       343 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~~~~  420 (526)
                      ..|++++|...|++....-.-+ -..+|..+..+..+.|+.+.|...|++..+..  |+ ......+....... |++..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~-~~y~~  191 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKA-GDYAP  191 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhc-ccchH
Confidence            7777777777777776542111 23467777777777777777777777777643  33 23344444444454 77777


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhh
Q 043068          421 VEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNF  476 (526)
Q Consensus       421 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  476 (526)
                      |..+++.....+. ++.......|+.-.+.|+.+.+-+.=.++....|..+...+|
T Consensus       192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f  246 (250)
T COG3063         192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF  246 (250)
T ss_pred             HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence            7777777776654 677777777777777777777777777776666655544443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.18  E-value=2.8e-08  Score=83.99  Aligned_cols=195  Identities=12%  Similarity=0.104  Sum_probs=143.6

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068          126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC  205 (526)
Q Consensus       126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~  205 (526)
                      ...|.-.|...|++..|..-+++.++.++ .+..+|..+...|-+.|+.+.|.+.|++.++..  |.+..+.|.....+|
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC  114 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHH
Confidence            44567778888888888888888887764 446677778888888888888888888888776  677778888888888


Q ss_pred             HcCChhhHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043068          206 KMGMIENAKKVFDVMTVKP----NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAK  281 (526)
Q Consensus       206 ~~g~~~~A~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~  281 (526)
                      ..|++++|...|++.-..|    -..+|..+.-+..+.|+.+.|...|++.++.... ...+...+.....+.|++-.|.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence            8888888888888762222    2447777777888888888888888887776433 3455666777777788888888


Q ss_pred             HHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068          282 MLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA  325 (526)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  325 (526)
                      .+++.....+ .++....-.-|..--..|+.+.+-+.=.++...
T Consensus       194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~  236 (250)
T COG3063         194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL  236 (250)
T ss_pred             HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            8887777666 377777666777777777777776665555544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.17  E-value=8.5e-07  Score=79.70  Aligned_cols=362  Identities=13%  Similarity=0.124  Sum_probs=199.4

Q ss_pred             HHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCH--------------
Q 043068           58 VTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSD--------------  123 (526)
Q Consensus        58 l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------  123 (526)
                      +..-..+.||+++|+..+..+....-.|      ...+..++-...=-|.+.+|..+..+.+...-              
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~------~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd  136 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNKDDAP------AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND  136 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhccCCCC------cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence            3444456899999999999887542111      11122222222223667777777665542110              


Q ss_pred             ---------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHH-HHHHHhcCChhHHHHHHHHHHHc
Q 043068          124 ---------------FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSL-LGVLVRVNSIKLAEEFFHQIVKE  187 (526)
Q Consensus       124 ---------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~  187 (526)
                                     .---+|.......-.+++|+++|.+....+  |.-...|.- .-.|.+..-++-+.++++-.++.
T Consensus       137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q  214 (557)
T KOG3785|consen  137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ  214 (557)
T ss_pred             HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence                           001123333333445677888888776544  444444433 33566777777777777777665


Q ss_pred             CCCCCCHHHHHHHHHHHHHc--CChhhHH--HHHHhC-------------------------CCCCCH-----HHHHHHH
Q 043068          188 NVVPPDVSTYTTMIRGYCKM--GMIENAK--KVFDVM-------------------------TVKPNL-----LAYNTMI  233 (526)
Q Consensus       188 ~~~~~~~~~~~~li~~~~~~--g~~~~A~--~~~~~~-------------------------~~~p~~-----~~~~~li  233 (526)
                      -  |.+....|..+....+.  |+..+++  ++.+..                         .+-|..     ..--.|+
T Consensus       215 ~--pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~  292 (557)
T KOG3785|consen  215 F--PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLI  292 (557)
T ss_pred             C--CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhe
Confidence            3  55555666555444332  2222111  111110                         011111     1122344


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHcCCCCC-HHhHHHHHHH
Q 043068          234 NGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGR-------VDEAKMLMAKMRLNGFKDN-VSTHKSMLKG  305 (526)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~~~-~~~~~~li~~  305 (526)
                      --|.+.+++.+|..+.+++.-.  .|-......+  ..+..|+       ..-|.+.|...-+++..-| ...-.++...
T Consensus       293 iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgv--v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~  368 (557)
T KOG3785|consen  293 IYYLNQNDVQEAISLCKDLDPT--TPYEYILKGV--VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY  368 (557)
T ss_pred             eeecccccHHHHHHHHhhcCCC--ChHHHHHHHH--HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence            4566777888887776665321  2222222222  2222222       3445555555544443333 3345566777


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHH
Q 043068          306 LCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSF-NAVFRILVENGELDR  384 (526)
Q Consensus       306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~  384 (526)
                      +.-..++++.+-.++.+..--...|...+ .+..+++..|++.+|+++|-++....++ |..+| ..|.++|.+.+.++-
T Consensus       369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~l  446 (557)
T KOG3785|consen  369 FFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQL  446 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchH
Confidence            77777888888777777665444344433 4677888888888888888777654444 44444 455677888888888


Q ss_pred             HHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043068          385 AILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMY  440 (526)
Q Consensus       385 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  440 (526)
                      |++++-++..   ..+..+...+|..-|-..+.+=-|.+.|+.+...  .|++.-|
T Consensus       447 AW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW  497 (557)
T KOG3785|consen  447 AWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW  497 (557)
T ss_pred             HHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence            8877766654   2345566666655555557777777777777654  4455444

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.16  E-value=7.1e-07  Score=88.15  Aligned_cols=376  Identities=12%  Similarity=0.092  Sum_probs=244.6

Q ss_pred             CcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-ChhhHHH
Q 043068           88 YHHTTPCYTAITDVLLSHSLISIAASLLKNSNKL---SDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGA-CLYSYNS  163 (526)
Q Consensus        88 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~  163 (526)
                      +..+...|..+.-.+...|+|+.+.+.|++..+.   ....|..+...|...|.-..|+.+++........| +...+-.
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm  398 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM  398 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence            4456667888888888899999999999876532   34478888889999999999999998876555334 3444444


Q ss_pred             HHHHHHh-cCChhHHHHHHHHHHHcCC-C--CCCHHHHHHHHHHHHHcC-----------ChhhHHHHHHhC----CCCC
Q 043068          164 LLGVLVR-VNSIKLAEEFFHQIVKENV-V--PPDVSTYTTMIRGYCKMG-----------MIENAKKVFDVM----TVKP  224 (526)
Q Consensus       164 li~~~~~-~g~~~~A~~~~~~~~~~~~-~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~----~~~p  224 (526)
                      .-..|.+ .+.++++++.-.+++...+ .  ......|..+.-+|...-           ...++.+.+++.    +..|
T Consensus       399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp  478 (799)
T KOG4162|consen  399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP  478 (799)
T ss_pred             HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            4455554 3677777777666665110 0  122345555555554321           133456666665    3344


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043068          225 NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLK  304 (526)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  304 (526)
                      ++..|  +.--|+..++++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+...+.- ..|-.....-++
T Consensus       479 ~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~  555 (799)
T KOG4162|consen  479 LVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH  555 (799)
T ss_pred             hHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence            44444  344466778999999999999988666688899998888889999999999988776431 111000000011


Q ss_pred             HHHHcCCHHHHHHHHHHHH---------------------------------------------------HcC-------
Q 043068          305 GLCVVGKFDQAVGYLRNVM---------------------------------------------------EAN-------  326 (526)
Q Consensus       305 ~~~~~g~~~~A~~~~~~~~---------------------------------------------------~~~-------  326 (526)
                      .-...++.++++.....+.                                                   ..+       
T Consensus       556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~  635 (799)
T KOG4162|consen  556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS  635 (799)
T ss_pred             hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence            1111222222222111110                                                   001       


Q ss_pred             ----CCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCC
Q 043068          327 ----MNPD------VKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMD  396 (526)
Q Consensus       327 ----~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  396 (526)
                          ..|+      ...|......+.+.+..++|...+.+..... ......|......+...|..++|.+.|.....  
T Consensus       636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--  712 (799)
T KOG4162|consen  636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--  712 (799)
T ss_pred             ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--
Confidence                0111      1234455667778888888888887776542 33455666666778888999999999988887  


Q ss_pred             CCcCH-HHHHHHHHHHHhcCCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068          397 CLPNF-VSYNTIICGLCMAKGRMQDVED--LVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLL  471 (526)
Q Consensus       397 ~~p~~-~~~~~ll~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~  471 (526)
                      +.|+. ....++...+... |+..-|..  ++..+++.++. +...|..|...+.+.|+.+.|.+.|....+.....|
T Consensus       713 ldP~hv~s~~Ala~~lle~-G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  713 LDPDHVPSMTALAELLLEL-GSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             cCCCCcHHHHHHHHHHHHh-CCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            44664 4455555555554 77666666  99999988766 889999999999999999999999999888776444

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.15  E-value=3.4e-07  Score=88.76  Aligned_cols=305  Identities=11%  Similarity=0.061  Sum_probs=191.0

Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHHcCChhhHHHHHHhC-CCCC-CHHHHHHHHH
Q 043068          158 LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDV-STYTTMIRGYCKMGMIENAKKVFDVM-TVKP-NLLAYNTMIN  234 (526)
Q Consensus       158 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~  234 (526)
                      ...|..+...+...|+.+.+.+.+....+......+. .........+...|++++|.+.+++. ...| +...+.. ..
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~   84 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HL   84 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hH
Confidence            5566677777777888888888887776654212222 22333445567789999999999886 2233 4444442 22


Q ss_pred             HHHh----cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHc
Q 043068          235 GFCK----KGELEEAKKCMNEMMNRGCRPN-ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV  309 (526)
Q Consensus       235 ~~~~----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  309 (526)
                      .+..    .+..+.+.+.+..  .....|+ ......+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~  161 (355)
T cd05804          85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ  161 (355)
T ss_pred             HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence            3333    3455555555544  1122333 3444566678889999999999999999876 56677888999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCC-CCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHHcCCH
Q 043068          310 GKFDQAVGYLRNVMEANMN-PDV--KSYEVVINGFCKIGKSDEAISLLKEMRARGL-KPTVFSF-N--AVFRILVENGEL  382 (526)
Q Consensus       310 g~~~~A~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~  382 (526)
                      |++++|...+++..+.... ++.  ..|..+...+...|++++|+.++++...... .+..... +  .++.-+...|..
T Consensus       162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~  241 (355)
T cd05804         162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV  241 (355)
T ss_pred             CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence            9999999999998876432 232  3466788899999999999999999864422 1112111 1  233334444533


Q ss_pred             HHHHHH--H-HHcccCC-CCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhC
Q 043068          383 DRAILL--L-KQMPQMD-CLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHN--------LDFTMYSCLLKGYCEE  450 (526)
Q Consensus       383 ~~a~~~--~-~~~~~~~-~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~--------p~~~~~~~l~~~~~~~  450 (526)
                      +.+.+.  + ....... .............++... |+.++|..+++.+......        ......-....++...
T Consensus       242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~  320 (355)
T cd05804         242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA-GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE  320 (355)
T ss_pred             ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence            333332  1 1111110 011111112333344444 8999999999988663211        0122333344456789


Q ss_pred             CCHHHHHHHHHHHHHcC
Q 043068          451 GNVENVMQIAHEMVTKK  467 (526)
Q Consensus       451 g~~~~a~~~~~~m~~~~  467 (526)
                      |+.++|.+++...+...
T Consensus       321 g~~~~A~~~L~~al~~a  337 (355)
T cd05804         321 GNYATALELLGPVRDDL  337 (355)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999888766

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.11  E-value=2.9e-08  Score=98.93  Aligned_cols=241  Identities=16%  Similarity=0.180  Sum_probs=148.9

Q ss_pred             cCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHH
Q 043068          118 SNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTY  197 (526)
Q Consensus       118 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  197 (526)
                      +..|+-++|..+|..|+..|+.+.|- +|.-|...........++.++.+....++.+.+.            .|...||
T Consensus        20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~aDty   86 (1088)
T KOG4318|consen   20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLADTY   86 (1088)
T ss_pred             cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCchhHH
Confidence            33555567777777777777777666 6666665555455666666666666666655443            3556677


Q ss_pred             HHHHHHHHHcCChhh---HHHHHHhC-------C-------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043068          198 TTMIRGYCKMGMIEN---AKKVFDVM-------T-------------VKP-NLLAYNTMINGFCKKGELEEAKKCMNEMM  253 (526)
Q Consensus       198 ~~li~~~~~~g~~~~---A~~~~~~~-------~-------------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~  253 (526)
                      +.|..+|...||+..   +.+.++.+       |             +.| ....-.+.+......|-++.+++++..+-
T Consensus        87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~P  166 (1088)
T KOG4318|consen   87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVP  166 (1088)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            777777777776543   22211111       1             011 01111233344445566666666665543


Q ss_pred             HcC-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 043068          254 NRG-CRPNELTYNAMIYGLCINGR-VDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDV  331 (526)
Q Consensus       254 ~~g-~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~  331 (526)
                      ... ..|..+    .++-+..... +++-..+.....+   .++..++.+.++.-...|+.+.|..++.+|.+.|...+.
T Consensus       167 vsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~  239 (1088)
T KOG4318|consen  167 VSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA  239 (1088)
T ss_pred             cccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence            221 111111    2333333322 3333333333332   588889999999999999999999999999999888877


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 043068          332 KSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGE  381 (526)
Q Consensus       332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  381 (526)
                      .-|-.|+.+   .++...++.+++-|.+.|+.|+..|+.-.+..+..+|.
T Consensus       240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            766666655   78888888888999999999999988888777777555

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.10  E-value=2.1e-06  Score=83.31  Aligned_cols=384  Identities=11%  Similarity=0.081  Sum_probs=251.4

Q ss_pred             cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHcCCCHHH
Q 043068           65 QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKL---SDFFISKLIKAYGDRGNVKA  141 (526)
Q Consensus        65 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~  141 (526)
                      .+.+...+++.+.+++..|..      ..+....+-.+...|+-++|...++.+...   +.+-|..+.-.+....++++
T Consensus        20 ~kQYkkgLK~~~~iL~k~~eH------geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~e   93 (700)
T KOG1156|consen   20 TKQYKKGLKLIKQILKKFPEH------GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDE   93 (700)
T ss_pred             HHHHHhHHHHHHHHHHhCCcc------chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHH
Confidence            677888899998888765432      223455566677789999999999877643   44567788888888899999


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-
Q 043068          142 AIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-  220 (526)
Q Consensus       142 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-  220 (526)
                      |+++|..+...+. .|...|.-+.-.-.+.|+++.....-.++.+..  +.....|..++.++.-.|+...|..++++. 
T Consensus        94 aiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~  170 (700)
T KOG1156|consen   94 AIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKMALEILEEFE  170 (700)
T ss_pred             HHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988774 567888877777888899998888888888775  667788999999999999999999998887 


Q ss_pred             ---CCCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068          221 ---TVKPNLLAYNTMI------NGFCKKGELEEAKKCMNEMMNRGCRPNELTY-NAMIYGLCINGRVDEAKMLMAKMRLN  290 (526)
Q Consensus       221 ---~~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~  290 (526)
                         .-.|+...|.-..      ....+.|..++|.+.+..-...  ..|-..+ ..-...+.+.+++++|..++..+...
T Consensus       171 ~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r  248 (700)
T KOG1156|consen  171 KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER  248 (700)
T ss_pred             HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence               1235655554332      3456678888888877665443  2233333 34556678899999999999999877


Q ss_pred             CCCCCHHhHHH-HHHHHHHcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 043068          291 GFKDNVSTHKS-MLKGLCVVGKFDQAV-GYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFS  368 (526)
Q Consensus       291 ~~~~~~~~~~~-li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~  368 (526)
                      .  ||..-|.. +..++.+-.+.-+++ .+|....+.-.. ....-..=++......-.+..-+++..+.+.|+++-   
T Consensus       249 n--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---  322 (700)
T KOG1156|consen  249 N--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---  322 (700)
T ss_pred             C--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---
Confidence            4  55555444 444444444444444 556555443111 111111111111112233445566677777776542   


Q ss_pred             HHHHHHHHHHcCCHH---H-HHHHHHHcccCC----------CCcCHHHHH--HHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 043068          369 FNAVFRILVENGELD---R-AILLLKQMPQMD----------CLPNFVSYN--TIICGLCMAKGRMQDVEDLVDRMIRSG  432 (526)
Q Consensus       369 ~~~li~~~~~~g~~~---~-a~~~~~~~~~~~----------~~p~~~~~~--~ll~~~~~~~g~~~~a~~~~~~~~~~~  432 (526)
                      +..+...|-.-...+   + +..+...+...|          -.|....|+  .++..+-+. |+++.|+.+++..+++ 
T Consensus       323 f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~-g~~~~A~~yId~AIdH-  400 (700)
T KOG1156|consen  323 FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKL-GDYEVALEYIDLAIDH-  400 (700)
T ss_pred             hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHhcc-
Confidence            333333332211111   1 111122221111          135555444  445555554 9999999999999974 


Q ss_pred             CCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          433 HNLDF-TMYSCLLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       433 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                       .|+. ..|..-.+.+...|+.++|...+++..+.+-
T Consensus       401 -TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~  436 (700)
T KOG1156|consen  401 -TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT  436 (700)
T ss_pred             -CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence             4553 4676777889999999999999999988875

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.09  E-value=1.6e-06  Score=95.04  Aligned_cols=369  Identities=12%  Similarity=0.021  Sum_probs=229.9

Q ss_pred             HHHHHhCCCHHHHHHHHHhcCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 043068           99 TDVLLSHSLISIAASLLKNSNKLSDF--FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKL  176 (526)
Q Consensus        99 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  176 (526)
                      +..+...|.+.+|.......+.....  ............|+++.+..+++.+.......+..........+...|++++
T Consensus       348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~  427 (903)
T PRK04841        348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE  427 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence            44455566666666555554433221  1222334455678888888887765321111223333444556677899999


Q ss_pred             HHHHHHHHHHcCC-C----CCC--HHHHHHHHHHHHHcCChhhHHHHHHhC-C-CC-CC----HHHHHHHHHHHHhcCCH
Q 043068          177 AEEFFHQIVKENV-V----PPD--VSTYTTMIRGYCKMGMIENAKKVFDVM-T-VK-PN----LLAYNTMINGFCKKGEL  242 (526)
Q Consensus       177 A~~~~~~~~~~~~-~----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~-p~----~~~~~~li~~~~~~g~~  242 (526)
                      |..++......-. .    ++.  ......+...+...|++++|...+++. . .. .+    ....+.+...+...|++
T Consensus       428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~  507 (903)
T PRK04841        428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL  507 (903)
T ss_pred             HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence            9999988754310 0    111  122233445566799999999998875 1 11 11    13456667778889999


Q ss_pred             HHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC---CHHhHHHHHHHHHHcC
Q 043068          243 EEAKKCMNEMMNRGCR-----PNELTYNAMIYGLCINGRVDEAKMLMAKMRLN----GFKD---NVSTHKSMLKGLCVVG  310 (526)
Q Consensus       243 ~~A~~~~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~~li~~~~~~g  310 (526)
                      ++|...+.+.....-.     ....++..+...+...|++++|...+++....    +...   ....+..+...+...|
T Consensus       508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G  587 (903)
T PRK04841        508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA  587 (903)
T ss_pred             HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence            9999999888653111     11234556677788999999999999887542    2111   2234555667778889


Q ss_pred             CHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHHHcC
Q 043068          311 KFDQAVGYLRNVMEAN--MNP--DVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKP-TVFSF-----NAVFRILVENG  380 (526)
Q Consensus       311 ~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~-----~~li~~~~~~g  380 (526)
                      ++++|...+++.....  ..+  ....+..+...+...|++++|...+.+........ ....+     ...+..+...|
T Consensus       588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  667 (903)
T PRK04841        588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG  667 (903)
T ss_pred             CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence            9999999998876531  111  23345556678889999999999998875421110 11111     11224455689


Q ss_pred             CHHHHHHHHHHcccCCCCcCHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhCCC
Q 043068          381 ELDRAILLLKQMPQMDCLPNFV---SYNTIICGLCMAKGRMQDVEDLVDRMIRS----GHNLD-FTMYSCLLKGYCEEGN  452 (526)
Q Consensus       381 ~~~~a~~~~~~~~~~~~~p~~~---~~~~ll~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~  452 (526)
                      +.+.|.+++.............   .+..+...+... |+.++|...+++....    |..++ ..+...+..++.+.|+
T Consensus       668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~  746 (903)
T PRK04841        668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL-GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR  746 (903)
T ss_pred             CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence            9999999988766522111111   122333444444 9999999999988764    33322 3467777888999999


Q ss_pred             HHHHHHHHHHHHHcCC
Q 043068          453 VENVMQIAHEMVTKKG  468 (526)
Q Consensus       453 ~~~a~~~~~~m~~~~~  468 (526)
                      .++|...+.+.++...
T Consensus       747 ~~~A~~~L~~Al~la~  762 (903)
T PRK04841        747 KSEAQRVLLEALKLAN  762 (903)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999988764

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.08  E-value=2.7e-06  Score=84.23  Aligned_cols=382  Identities=12%  Similarity=0.067  Sum_probs=232.1

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 043068          122 SDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMI  201 (526)
Q Consensus       122 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li  201 (526)
                      ++..|..|.-+....|+++.+.+.|++...... .....|+.+...+...|.-..|..+++.......-|++...+-...
T Consensus       322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas  400 (799)
T KOG4162|consen  322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS  400 (799)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence            556777777778888888888888888765433 3456778888888888888888888877665432244444444444


Q ss_pred             HHHHH-cCChhhHHHHHHhC----C---CCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCC-CCH
Q 043068          202 RGYCK-MGMIENAKKVFDVM----T---VKPNLLAYNTMINGFCKK-----------GELEEAKKCMNEMMNRGCR-PNE  261 (526)
Q Consensus       202 ~~~~~-~g~~~~A~~~~~~~----~---~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~-p~~  261 (526)
                      ..|.+ .+.+++++.+-.+.    +   -.-....|..+.-+|...           ....++++.+++..+.+.. |+.
T Consensus       401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~  480 (799)
T KOG4162|consen  401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV  480 (799)
T ss_pred             HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence            44443 35555555544443    1   011233444444444331           2245677777887776433 333


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------------
Q 043068          262 LTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN-------------  328 (526)
Q Consensus       262 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------------  328 (526)
                      ..|.++  -|+..++++.|.+...+..+.+-..+...|..++-.+.-.+++.+|+.+.+...+.-..             
T Consensus       481 if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~  558 (799)
T KOG4162|consen  481 IFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL  558 (799)
T ss_pred             HHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence            333333  56777889999999998888755778888888888888889999999888877654111             


Q ss_pred             ------CCHHHHHHHHHHHHh-----------------------cCChhHHHHHHHHHH--------HCC---------C
Q 043068          329 ------PDVKSYEVVINGFCK-----------------------IGKSDEAISLLKEMR--------ARG---------L  362 (526)
Q Consensus       329 ------~~~~~~~~li~~~~~-----------------------~g~~~~A~~~~~~m~--------~~~---------~  362 (526)
                            --..|...++..+-.                       .++..+|.+..+.+.        ..|         .
T Consensus       559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~  638 (799)
T KOG4162|consen  559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV  638 (799)
T ss_pred             hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence                  001122222222210                       001111111111110        001         0


Q ss_pred             C--CC------HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC
Q 043068          363 K--PT------VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHN  434 (526)
Q Consensus       363 ~--p~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~  434 (526)
                      .  |+      ...|......+.+.++.++|...+.+..+.. .-....|...-..+.. .|..++|.+.|...+..++.
T Consensus       639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~-~~~~~EA~~af~~Al~ldP~  716 (799)
T KOG4162|consen  639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEV-KGQLEEAKEAFLVALALDPD  716 (799)
T ss_pred             cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHH-HHhhHHHHHHHHHHHhcCCC
Confidence            0  11      1123344556777888888887777776632 1223333333233333 48999999999998876544


Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHcCCCccchhhhHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHH
Q 043068          435 LDFTMYSCLLKGYCEEGNVENVMQ--IAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISRFVFVHQVVVIMERT  512 (526)
Q Consensus       435 p~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  512 (526)
                       ++....++..++.+.|+..-|..  ++..+++.++..+.+.-++              |+..... +..+++.+-..-|
T Consensus       717 -hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L--------------G~v~k~~-Gd~~~Aaecf~aa  780 (799)
T KOG4162|consen  717 -HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL--------------GEVFKKL-GDSKQAAECFQAA  780 (799)
T ss_pred             -CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH--------------HHHHHHc-cchHHHHHHHHHH
Confidence             66788999999999998888877  9999999999777654444              3333222 3355777777766


Q ss_pred             H--hcCCcccceec
Q 043068          513 V--EDGKRSECLIV  524 (526)
Q Consensus       513 ~--~~g~~~~~~~~  524 (526)
                      +  ++-+++.+++.
T Consensus       781 ~qLe~S~PV~pFs~  794 (799)
T KOG4162|consen  781 LQLEESNPVLPFSN  794 (799)
T ss_pred             HhhccCCCcccccc
Confidence            6  77777777654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.07  E-value=1.2e-06  Score=78.47  Aligned_cols=193  Identities=9%  Similarity=0.144  Sum_probs=103.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 043068          271 LCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEA  350 (526)
Q Consensus       271 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  350 (526)
                      +.-.|+...|+.....+.+.. +.|...+..-..+|...|++..|+.-++...+.... ++.++--+-..+...|+.+.+
T Consensus       165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~s  242 (504)
T KOG0624|consen  165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENS  242 (504)
T ss_pred             HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHH
Confidence            334455555555555555443 445555555555555555555555555544443222 333444444455555555555


Q ss_pred             HHHHHHHHHCCCCCCHH----HHHHH---------HHHHHHcCCHHHHHHHHHHcccCCCCcC--HHHHHH--HHHHHHh
Q 043068          351 ISLLKEMRARGLKPTVF----SFNAV---------FRILVENGELDRAILLLKQMPQMDCLPN--FVSYNT--IICGLCM  413 (526)
Q Consensus       351 ~~~~~~m~~~~~~p~~~----~~~~l---------i~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~--ll~~~~~  413 (526)
                      +...++..+.  .||..    .|..|         +......++|.++++..+...+..  |.  ...++.  ++..+.+
T Consensus       243 L~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e--p~~~~ir~~~~r~~c~C~~  318 (504)
T KOG0624|consen  243 LKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE--PEETMIRYNGFRVLCTCYR  318 (504)
T ss_pred             HHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC--Ccccceeeeeeheeeeccc
Confidence            5555555543  33321    11111         112345566777777666666533  33  222221  2222233


Q ss_pred             cCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068          414 AKGRMQDVEDLVDRMIRSGHNL-DFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLL  471 (526)
Q Consensus       414 ~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~  471 (526)
                      ..|++.+|++...+.++.  .| |..++---..+|.-...++.|+.-|++..+.+....
T Consensus       319 ~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~  375 (504)
T KOG0624|consen  319 EDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT  375 (504)
T ss_pred             ccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence            447777888777777763  33 366777777777777777888888877777776543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=4.6e-06  Score=80.14  Aligned_cols=361  Identities=11%  Similarity=0.089  Sum_probs=198.4

Q ss_pred             HHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 043068           99 TDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIK  175 (526)
Q Consensus        99 ~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  175 (526)
                      ++.+.+++.+++|.....+..   +.+...+..-+-+..+.++|++|+.+.+.-..... .+...| .-.-+..+.+..+
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~f-EKAYc~Yrlnk~D   96 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFF-EKAYCEYRLNKLD   96 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhH-HHHHHHHHcccHH
Confidence            566778899999988777533   34455677777788899999999966554221110 111111 1223445789999


Q ss_pred             HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-C-CCCC----------------------------
Q 043068          176 LAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-T-VKPN----------------------------  225 (526)
Q Consensus       176 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~----------------------------  225 (526)
                      +|+..++-.-     +.+..+...-...+.+.|++++|..+|+.+ . ..++                            
T Consensus        97 ealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~  171 (652)
T KOG2376|consen   97 EALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP  171 (652)
T ss_pred             HHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence            9999888321     334557777778889999999999999987 1 0000                            


Q ss_pred             HHHHHHH---HHHHHhcCCHHHHHHHHHHHHHcC-------CCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068          226 LLAYNTM---INGFCKKGELEEAKKCMNEMMNRG-------CRPNEL-------TYNAMIYGLCINGRVDEAKMLMAKMR  288 (526)
Q Consensus       226 ~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g-------~~p~~~-------~~~~li~~~~~~g~~~~a~~~~~~~~  288 (526)
                      ..+|..+   .-.+...|++.+|++++....+.+       -.-+..       .-..+.-.+-..|+.++|..+|...+
T Consensus       172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i  251 (652)
T KOG2376|consen  172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII  251 (652)
T ss_pred             cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            1123222   234455788888888887773321       111111       11234445667788888888888887


Q ss_pred             HcCCCCCHH----hHHHHHHHHHHcCCHH-HHHHHHHH----------------------------------------HH
Q 043068          289 LNGFKDNVS----THKSMLKGLCVVGKFD-QAVGYLRN----------------------------------------VM  323 (526)
Q Consensus       289 ~~~~~~~~~----~~~~li~~~~~~g~~~-~A~~~~~~----------------------------------------~~  323 (526)
                      +.. ++|..    .-|.++..-....-++ .++..++.                                        ..
T Consensus       252 ~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~  330 (652)
T KOG2376|consen  252 KRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS  330 (652)
T ss_pred             Hhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            765 33331    1122221110000000 00000000                                        00


Q ss_pred             Hc--CCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------H
Q 043068          324 EA--NMNPDVKSYEVVINGF--CKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLK--------Q  391 (526)
Q Consensus       324 ~~--~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~  391 (526)
                      ..  +..|. ..+.+++...  ++...+.+|.+++...-+....-...+.-..+......|+++.|++++.        .
T Consensus       331 a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss  409 (652)
T KOG2376|consen  331 ASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS  409 (652)
T ss_pred             HhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence            00  11111 1222222222  1222355666666665544211123455566677788999999999998        5


Q ss_pred             cccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043068          392 MPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS--GHNLDF----TMYSCLLKGYCEEGNVENVMQIAHEMVT  465 (526)
Q Consensus       392 ~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~  465 (526)
                      +.+.+..|-.  ...+...+.+. ++.+.|..++.+.+..  .-.+..    .++.-+...-.+.|+-++|..+++++++
T Consensus       410 ~~~~~~~P~~--V~aiv~l~~~~-~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k  486 (652)
T KOG2376|consen  410 ILEAKHLPGT--VGAIVALYYKI-KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK  486 (652)
T ss_pred             hhhhccChhH--HHHHHHHHHhc-cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence            5554444444  44444445554 5656666666655532  011122    2333344444678999999999999999


Q ss_pred             cCCCcc
Q 043068          466 KKGRLL  471 (526)
Q Consensus       466 ~~~~~~  471 (526)
                      .++.+.
T Consensus       487 ~n~~d~  492 (652)
T KOG2376|consen  487 FNPNDT  492 (652)
T ss_pred             hCCchH
Confidence            876443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=2.1e-06  Score=81.62  Aligned_cols=357  Identities=15%  Similarity=0.091  Sum_probs=197.2

Q ss_pred             HHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHcCC
Q 043068           61 VIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKL---SDFFISKLIKAYGDRG  137 (526)
Q Consensus        61 ~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g  137 (526)
                      .....||++.|+..|..++...|.      +...|..-..++.+.|+|++|.+--.+....   .+..|+....++.-.|
T Consensus        11 aa~s~~d~~~ai~~~t~ai~l~p~------nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen   11 AAFSSGDFETAIRLFTEAIMLSPT------NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG   84 (539)
T ss_pred             hhcccccHHHHHHHHHHHHccCCC------ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence            445679999999999999988764      2234777788889999999998877765543   3558999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHH------
Q 043068          138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVN---SIKLAEEFFHQIVKENV--VPPDVSTYTTMIRGYCK------  206 (526)
Q Consensus       138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~--~~~~~~~~~~li~~~~~------  206 (526)
                      ++++|+..|.+-++..+ .+...++.+..++....   +.-.--.++..+.....  .......|..++..+-+      
T Consensus        85 ~~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~  163 (539)
T KOG0548|consen   85 DYEEAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK  163 (539)
T ss_pred             cHHHHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence            99999999999887763 44566666666662110   00000011111100000  00000112222222111      


Q ss_pred             ----cCChhhHHHHHHhC---------------CCCC------------C----------HHHHHHHHHHHHhcCCHHHH
Q 043068          207 ----MGMIENAKKVFDVM---------------TVKP------------N----------LLAYNTMINGFCKKGELEEA  245 (526)
Q Consensus       207 ----~g~~~~A~~~~~~~---------------~~~p------------~----------~~~~~~li~~~~~~g~~~~A  245 (526)
                          ...+..|.-.+...               +..|            |          ..-...+.+...+..+++.|
T Consensus       164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a  243 (539)
T KOG0548|consen  164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA  243 (539)
T ss_pred             cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence                01111111111100               0011            1          11245677778888888899


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHH-------HHHHHHHHcCCHHHHHHH
Q 043068          246 KKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHK-------SMLKGLCVVGKFDQAVGY  318 (526)
Q Consensus       246 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~~~~~g~~~~A~~~  318 (526)
                      ++-+....+..  -+..-++....+|...|.+.++....+...+.|. -...-|+       .+..+|.+.++++.|+..
T Consensus       244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~  320 (539)
T KOG0548|consen  244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKY  320 (539)
T ss_pred             HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence            98888888764  3555566777788888888887777777666552 2222222       233466667788888888


Q ss_pred             HHHHHHcCCCCCHHHHH-------------------------HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043068          319 LRNVMEANMNPDVKSYE-------------------------VVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVF  373 (526)
Q Consensus       319 ~~~~~~~~~~~~~~~~~-------------------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li  373 (526)
                      |.+.......|+...-.                         .-...+.+.|++..|++.|.+++.+. +-|...|....
T Consensus       321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRA  399 (539)
T KOG0548|consen  321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRA  399 (539)
T ss_pred             HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHH
Confidence            88776654443322110                         01223445555555555555555543 22445555555


Q ss_pred             HHHHHcCCHHHHHHHHHHcccCCCCcCH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 043068          374 RILVENGELDRAILLLKQMPQMDCLPNF-VSYNTIICGLCMAKGRMQDVEDLVDRMIRS  431 (526)
Q Consensus       374 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~  431 (526)
                      -+|.+.|.+..|++=.+..++.  .|+. ..|..-..++.. ..++++|.+.|++.++.
T Consensus       400 ac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~-mk~ydkAleay~eale~  455 (539)
T KOG0548|consen  400 ACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRA-MKEYDKALEAYQEALEL  455 (539)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence            5555555555555555544442  2332 222222222211 24555555555555554

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.05  E-value=3.2e-06  Score=75.75  Aligned_cols=293  Identities=16%  Similarity=0.095  Sum_probs=187.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHH---HHHH
Q 043068           57 IVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKL---IKAY  133 (526)
Q Consensus        57 ~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---i~~~  133 (526)
                      .+..-+...|.+..|+.-|+.+...+|+  +|    .++..-+..|...|+-..|..-+.+....-+.++..-   ...+
T Consensus        43 ElGk~lla~~Q~sDALt~yHaAve~dp~--~Y----~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl  116 (504)
T KOG0624|consen   43 ELGKELLARGQLSDALTHYHAAVEGDPN--NY----QAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcCCch--hH----HHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence            4566677788999999999999887653  23    3466667778888887777777776665555544433   3457


Q ss_pred             HcCCCHHHHHHHHHHHHhcCCCCC--hh------------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 043068          134 GDRGNVKAAIFWFHQAKQIENGAC--LY------------SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTT  199 (526)
Q Consensus       134 ~~~g~~~~A~~~~~~~~~~~~~~~--~~------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  199 (526)
                      .++|.+++|..=|+.+....+...  ..            .....+..+...|+...|+.....+++..  |-|...|..
T Consensus       117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wda~l~~~  194 (504)
T KOG0624|consen  117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PWDASLRQA  194 (504)
T ss_pred             hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cchhHHHHH
Confidence            889999999999999887664211  11            12233445666789999999999998876  778888999


Q ss_pred             HHHHHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----------
Q 043068          200 MIRGYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAM----------  267 (526)
Q Consensus       200 li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----------  267 (526)
                      -..+|...|++..|+.-+... .+ ..+..++.-+-..+...|+.+.++...++.++.  .||...+-..          
T Consensus       195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~  272 (504)
T KOG0624|consen  195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKS  272 (504)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHH
Confidence            999999999999998777665 22 345667777778888899999999998888875  5665432111          


Q ss_pred             ---HHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043068          268 ---IYGLCINGRVDEAKMLMAKMRLNGFKDNV---STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGF  341 (526)
Q Consensus       268 ---i~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~  341 (526)
                         +......++|.++++-.+...+.......   ..+..+-.++...|++.+|++...++++.... |+.++.--..+|
T Consensus       273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~  351 (504)
T KOG0624|consen  273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAY  351 (504)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHH
Confidence               11223344455555555544433211111   12233344444455555555555555554221 344555555555


Q ss_pred             HhcCChhHHHHHHHHHHHC
Q 043068          342 CKIGKSDEAISLLKEMRAR  360 (526)
Q Consensus       342 ~~~g~~~~A~~~~~~m~~~  360 (526)
                      .-...++.|+.-|+...+.
T Consensus       352 l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  352 LGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             hhhHHHHHHHHHHHHHHhc
Confidence            5555555555555555543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.05  E-value=1.9e-07  Score=81.89  Aligned_cols=290  Identities=13%  Similarity=0.199  Sum_probs=162.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHHHH-HHHHHHh
Q 043068          161 YNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAYNT-MINGFCK  238 (526)
Q Consensus       161 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~-li~~~~~  238 (526)
                      +.+.+..+.+..+++.|++++..-.++.  |.+......|..+|....++..|-..++++ ...|...-|.. -...+.+
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~   90 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK   90 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence            4445555555666666666666555554  445556666666666666666666666665 23344333332 2344555


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHH
Q 043068          239 KGELEEAKKCMNEMMNRGCRPNELTYNAMIYG--LCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAV  316 (526)
Q Consensus       239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  316 (526)
                      .+.+.+|+++...|.+.   |+...-..-+.+  ....+++..+..++++....   .+..+.+.......+.|+++.|+
T Consensus        91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAv  164 (459)
T KOG4340|consen   91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAV  164 (459)
T ss_pred             hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHH
Confidence            66666666666655432   111111111111  12345555555555554322   22333334444445666666666


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-------------CH--------HHHHHHHH-
Q 043068          317 GYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKP-------------TV--------FSFNAVFR-  374 (526)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-------------~~--------~~~~~li~-  374 (526)
                      +-|+...+.+.--....|+..+..| +.|++..|++...+++++|++-             |.        ..-+.++. 
T Consensus       165 qkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA  243 (459)
T KOG4340|consen  165 QKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA  243 (459)
T ss_pred             HHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence            6666666543333445565555444 4466666666666666654421             11        11223333 


Q ss_pred             ------HHHHcCCHHHHHHHHHHcccC-CCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043068          375 ------ILVENGELDRAILLLKQMPQM-DCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGY  447 (526)
Q Consensus       375 ------~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  447 (526)
                            .+.+.|+.+.|.+.+..|.-+ .-..|++|...+.-  ....++..+..+-+.-+++.++ ....|+..++-.|
T Consensus       244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al--~n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly  320 (459)
T KOG4340|consen  244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL--MNMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY  320 (459)
T ss_pred             hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH--hcccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence                  356788999999988888742 23456666665532  2334677777777777776655 3567888888899


Q ss_pred             HhCCCHHHHHHHHHH
Q 043068          448 CEEGNVENVMQIAHE  462 (526)
Q Consensus       448 ~~~g~~~~a~~~~~~  462 (526)
                      |+..-++-|-.++-+
T Consensus       321 CKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  321 CKNEYFDLAADVLAE  335 (459)
T ss_pred             hhhHHHhHHHHHHhh
Confidence            999888888877643

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.05  E-value=4e-07  Score=79.82  Aligned_cols=324  Identities=13%  Similarity=0.093  Sum_probs=216.2

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHhcCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHH-HHHHHHHh
Q 043068           95 YTAITDVLLSHSLISIAASLLKNSNKLSD---FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYN-SLLGVLVR  170 (526)
Q Consensus        95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~  170 (526)
                      +.+.+-.+++..++..|.+++......++   ...+.|..+|....++..|-+.|+++....  |...-|. .-...+.+
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY~   90 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLYK   90 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHH
Confidence            45566667888999999999886654443   467888889999999999999999987655  3333332 23456777


Q ss_pred             cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH--HHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043068          171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRG--YCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKC  248 (526)
Q Consensus       171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  248 (526)
                      .+.+..|+++...|...    ++...-..-+.+  ....+++..+..+.++..-..+..+.+...-...+.|+++.|.+-
T Consensus        91 A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk  166 (459)
T KOG4340|consen   91 ACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK  166 (459)
T ss_pred             hcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence            88999999998888542    233222222222  234688889999999885455666666666667789999999999


Q ss_pred             HHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------CH---------------HhH
Q 043068          249 MNEMMNR-GCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKD-------------NV---------------STH  299 (526)
Q Consensus       249 ~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~  299 (526)
                      |+...+- |.. ....|+..+. ..+.|+++.|+++..++.++|++.             |+               ..+
T Consensus       167 FqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf  244 (459)
T KOG4340|consen  167 FQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF  244 (459)
T ss_pred             HHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence            9998876 455 5677887764 446789999999999998876421             11               122


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 043068          300 KSMLKGLCVVGKFDQAVGYLRNVMEA-NMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVE  378 (526)
Q Consensus       300 ~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~  378 (526)
                      |.-...+.+.|+++.|.+.+-+|..+ ....|++|...+.-.- ..+++.+..+-+.-+.+.+. ....||..++-.||+
T Consensus       245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCK  322 (459)
T KOG4340|consen  245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCK  322 (459)
T ss_pred             hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhh
Confidence            22233456788999998888887643 2344666655543322 23455555555665665543 345789999999999


Q ss_pred             cCCHHHHHHHHHHcccCCC-CcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043068          379 NGELDRAILLLKQMPQMDC-LPNFVSYNTIICGLCMAKGRMQDVEDLVDRMI  429 (526)
Q Consensus       379 ~g~~~~a~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~  429 (526)
                      ..-++-|-+++.+-...-. -.+...|+.+ .++....-..+++++-++.+.
T Consensus       323 Neyf~lAADvLAEn~~lTyk~L~~Yly~LL-daLIt~qT~pEea~KKL~~La  373 (459)
T KOG4340|consen  323 NEYFDLAADVLAENAHLTYKFLTPYLYDLL-DALITCQTAPEEAFKKLDGLA  373 (459)
T ss_pred             hHHHhHHHHHHhhCcchhHHHhhHHHHHHH-HHHHhCCCCHHHHHHHHHHHH
Confidence            9999999998876544211 1334444433 333333356777776665543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.98  E-value=1e-05  Score=88.88  Aligned_cols=333  Identities=12%  Similarity=0.041  Sum_probs=212.9

Q ss_pred             HHHHHHhCCCHHHHHHHHHhcCC----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC------CC--hhhHHHHH
Q 043068           98 ITDVLLSHSLISIAASLLKNSNK----LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENG------AC--LYSYNSLL  165 (526)
Q Consensus        98 l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~--~~~~~~li  165 (526)
                      .+..+...|++..+..+++..+.    .++.........+...|++++|..++......-..      +.  ......+.
T Consensus       380 ~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a  459 (903)
T PRK04841        380 HGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA  459 (903)
T ss_pred             hHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence            34455667888888888776531    22333334455566789999999999877543111      11  12222334


Q ss_pred             HHHHhcCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCChhhHHHHHHhC-----CC-CC--CHHHHHHHH
Q 043068          166 GVLVRVNSIKLAEEFFHQIVKENVVPPD----VSTYTTMIRGYCKMGMIENAKKVFDVM-----TV-KP--NLLAYNTMI  233 (526)
Q Consensus       166 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~-~p--~~~~~~~li  233 (526)
                      ..+...|++++|...+++..... -..+    ....+.+...+...|++++|...+++.     .. .+  ....+..+.
T Consensus       460 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la  538 (903)
T PRK04841        460 QVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS  538 (903)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence            45667899999999999987632 1112    134566777788899999999998876     11 11  123456677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC--CHHhHHHH
Q 043068          234 NGFCKKGELEEAKKCMNEMMNR----GCR--P-NELTYNAMIYGLCINGRVDEAKMLMAKMRLNG--FKD--NVSTHKSM  302 (526)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~l  302 (526)
                      ..+...|++++|...+++..+.    +..  + ....+..+...+...|++++|...+++.....  ..+  ....+..+
T Consensus       539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  618 (903)
T PRK04841        539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML  618 (903)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence            7888999999999999887653    211  1 22334555666778899999999998875431  112  23345556


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHH
Q 043068          303 LKGLCVVGKFDQAVGYLRNVMEANMNP-DVKSY-----EVVINGFCKIGKSDEAISLLKEMRARGLKPTV---FSFNAVF  373 (526)
Q Consensus       303 i~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li  373 (526)
                      ...+...|+.++|...+++........ ....+     ...+..+...|+.+.|...+............   ..+..+.
T Consensus       619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a  698 (903)
T PRK04841        619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA  698 (903)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence            777888999999999998875531110 11111     11234456689999999998776542211111   1134567


Q ss_pred             HHHHHcCCHHHHHHHHHHcccC----CCCcCH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 043068          374 RILVENGELDRAILLLKQMPQM----DCLPNF-VSYNTIICGLCMAKGRMQDVEDLVDRMIRSG  432 (526)
Q Consensus       374 ~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~  432 (526)
                      .++...|+.++|...+++....    |..++. .+...+-.++.. .|+.++|...+.++++..
T Consensus       699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~-~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ-QGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHh
Confidence            7788999999999999987652    322222 233334444444 499999999999998864

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.97  E-value=9e-06  Score=73.28  Aligned_cols=116  Identities=9%  Similarity=0.000  Sum_probs=49.1

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 043068          130 IKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGM  209 (526)
Q Consensus       130 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  209 (526)
                      ..++...|++++|+..|..+...+ .++...+-.|...+.-.|.+.+|..+-...      +.+...-..|.+...+.++
T Consensus        64 a~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklnd  136 (557)
T KOG3785|consen   64 AHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLND  136 (557)
T ss_pred             HHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCc
Confidence            334445555555555555544322 233444444444444445555554443322      2233333444444444444


Q ss_pred             hhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043068          210 IENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMN  254 (526)
Q Consensus       210 ~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  254 (526)
                      -++-..+.+.++.  ....--+|.+...-.-.+.+|+++|++.+.
T Consensus       137 Ek~~~~fh~~LqD--~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~  179 (557)
T KOG3785|consen  137 EKRILTFHSSLQD--TLEDQLSLASVHYMRMHYQEAIDVYKRVLQ  179 (557)
T ss_pred             HHHHHHHHHHHhh--hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444333320  111122233333333344555555554444

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=3.8e-06  Score=79.89  Aligned_cols=348  Identities=14%  Similarity=0.151  Sum_probs=208.4

Q ss_pred             HHHHHHHhCCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcC
Q 043068           97 AITDVLLSHSLISIAASLLKNSNKL---SDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGAC-LYSYNSLLGVLVRVN  172 (526)
Q Consensus        97 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g  172 (526)
                      .-..+....|+++.|...|-+...+   +...|+.-..+|++.|++++|++=-.+..+..  |+ ...|.....++.-.|
T Consensus         7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen    7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLG   84 (539)
T ss_pred             HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcc
Confidence            3466778899999999999876544   44578888899999999999998777766655  55 678999999999999


Q ss_pred             ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC----CC--CC------CHHHHHHHHHHHHhc-
Q 043068          173 SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM----TV--KP------NLLAYNTMINGFCKK-  239 (526)
Q Consensus       173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~--~p------~~~~~~~li~~~~~~-  239 (526)
                      ++++|+.-|.+-++..  |.|...++-+..++...  . ++.+.|..-    ++  .|      ....|..++..+-+. 
T Consensus        85 ~~~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p  159 (539)
T KOG0548|consen   85 DYEEAILAYSEGLEKD--PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP  159 (539)
T ss_pred             cHHHHHHHHHHHhhcC--CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence            9999999999999886  78888888888887211  1 112222211    11  11      111233333322211 


Q ss_pred             ---------CCHHHHHHHHHH-----HHHcC-------CCC----------------------CHHHHHHHHHHHHHcCC
Q 043068          240 ---------GELEEAKKCMNE-----MMNRG-------CRP----------------------NELTYNAMIYGLCINGR  276 (526)
Q Consensus       240 ---------g~~~~A~~~~~~-----m~~~g-------~~p----------------------~~~~~~~li~~~~~~g~  276 (526)
                               .++..|.-.+..     +...|       ..|                      -..-...+.++..+..+
T Consensus       160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~  239 (539)
T KOG0548|consen  160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD  239 (539)
T ss_pred             HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence                     111111111110     00001       111                      01124556777777888


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCChhH
Q 043068          277 VDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEV-------VINGFCKIGKSDE  349 (526)
Q Consensus       277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~g~~~~  349 (526)
                      ++.|++-+....+..  .+..-++....+|...|.+.++.....+..+.|.. ...-|+.       +..+|.+.++++.
T Consensus       240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~  316 (539)
T KOG0548|consen  240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEG  316 (539)
T ss_pred             HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence            888888888887654  55556677778888888888877777776665533 2222333       3345666778888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHH--HHHHHHHHHhcCCCHHHHHHHHHH
Q 043068          350 AISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVS--YNTIICGLCMAKGRMQDVEDLVDR  427 (526)
Q Consensus       350 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~~ll~~~~~~~g~~~~a~~~~~~  427 (526)
                      |+..|.+.......|+..         .+....+++....+...-  +.|....  -.. -..+.+ .|++.+|...|.+
T Consensus       317 ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~k-Gne~Fk-~gdy~~Av~~Yte  383 (539)
T KOG0548|consen  317 AIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY--INPEKAEEEREK-GNEAFK-KGDYPEAVKHYTE  383 (539)
T ss_pred             HHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHH-HHHHHh-ccCHHHHHHHHHH
Confidence            888888876654444322         222333344333333322  1122211  111 112223 3666666666666


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          428 MIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       428 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                      +++..+. |...|....-+|.+.|.+..|+.-.+..++.++
T Consensus       384 AIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p  423 (539)
T KOG0548|consen  384 AIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDP  423 (539)
T ss_pred             HHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc
Confidence            6666533 666666666666666666666666666666654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.95  E-value=5.5e-08  Score=89.58  Aligned_cols=48  Identities=19%  Similarity=0.248  Sum_probs=20.6

Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068          346 KSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQ  394 (526)
Q Consensus       346 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  394 (526)
                      .+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+
T Consensus       182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~  229 (290)
T PF04733_consen  182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE  229 (290)
T ss_dssp             CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            344444444444332 233444444444444444445444444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.95  E-value=8.2e-08  Score=88.47  Aligned_cols=247  Identities=15%  Similarity=0.069  Sum_probs=131.8

Q ss_pred             HHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh
Q 043068          131 KAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMI  210 (526)
Q Consensus       131 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  210 (526)
                      +-+.-.|++..++.-.+ ........+......+.+++...|+++.++   .++....  +|.......+...+...++-
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~--~~~l~av~~la~y~~~~~~~   82 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS--SPELQAVRLLAEYLSSPSDK   82 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS--SCCCHHHHHHHHHHCTSTTH
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC--ChhHHHHHHHHHHHhCccch
Confidence            33445666666665444 222221122334445556666666655433   3333332  45555554444444333444


Q ss_pred             hhHHHHHHhC--C-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068          211 ENAKKVFDVM--T-VK-PNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAK  286 (526)
Q Consensus       211 ~~A~~~~~~~--~-~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  286 (526)
                      +.+..-+++.  . .. .+..........+...|++++|++++++-      .+.......+..|.+.++++.|.+.++.
T Consensus        83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~  156 (290)
T PF04733_consen   83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN  156 (290)
T ss_dssp             HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5555555443  1 11 12222222234455567777777766542      2455556666777777777777777777


Q ss_pred             HHHcCCCCCHHhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043068          287 MRLNGFKDNVSTHKSMLKGLCV----VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGL  362 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  362 (526)
                      |.+..   +..+...++.++..    .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+.
T Consensus       157 ~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~  232 (290)
T PF04733_consen  157 MQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP  232 (290)
T ss_dssp             HHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred             HHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence            76532   22333334444432    23577777777776554 345677777777777778888888887777765532


Q ss_pred             CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHccc
Q 043068          363 KPTVFSFNAVFRILVENGEL-DRAILLLKQMPQ  394 (526)
Q Consensus       363 ~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~  394 (526)
                       -+..+...++.+....|+. +.+.+++.++..
T Consensus       233 -~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  233 -NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             -CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             -CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence             2455666667666677766 566677777765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.92  E-value=1.5e-05  Score=79.38  Aligned_cols=364  Identities=14%  Similarity=0.125  Sum_probs=186.7

Q ss_pred             HHHHHHHhCCCHHHHHHHHHhcCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhc----------CC---------CC
Q 043068           97 AITDVLLSHSLISIAASLLKNSNKLSD-FFISKLIKAYGDRGNVKAAIFWFHQAKQI----------EN---------GA  156 (526)
Q Consensus        97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~---------~~  156 (526)
                      .+-..|-..|.+++|.++.+...+... .+|.....-+...++.+.|++.|++....          .+         ..
T Consensus       831 LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~  910 (1416)
T KOG3617|consen  831 LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKR  910 (1416)
T ss_pred             HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhcc
Confidence            333444455666666666554443332 24444555555556666666666543110          00         01


Q ss_pred             ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHH
Q 043068          157 CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGF  236 (526)
Q Consensus       157 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~  236 (526)
                      |...|.-....+-..|+.+.|+.+|....          -|..+++..|-.|+.++|-++-++-+   |......+.+.|
T Consensus       911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~----------D~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~Y  977 (1416)
T KOG3617|consen  911 DESLYSWWGQYLESVGEMDAALSFYSSAK----------DYFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMY  977 (1416)
T ss_pred             chHHHHHHHHHHhcccchHHHHHHHHHhh----------hhhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHh
Confidence            12222222333333444555555444332          24445555666667777766666643   677777888888


Q ss_pred             HhcCCHHHHHHHHHHHHH----------cCCCCCHHHH-------------------------HHHHHHHHHcCCHHHHH
Q 043068          237 CKKGELEEAKKCMNEMMN----------RGCRPNELTY-------------------------NAMIYGLCINGRVDEAK  281 (526)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~----------~g~~p~~~~~-------------------------~~li~~~~~~g~~~~a~  281 (526)
                      -..|++.+|..+|.+...          .+.+  ...+                         ...+..|-+.|.+.+|+
T Consensus       978 En~g~v~~Av~FfTrAqafsnAIRlcKEnd~~--d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kAL 1055 (1416)
T KOG3617|consen  978 ENDGDVVKAVKFFTRAQAFSNAIRLCKENDMK--DRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKAL 1055 (1416)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHH
Confidence            888888888888866533          1111  1111                         11223355566666665


Q ss_pred             HHHHH--------HHHc--CCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHH----------cC---------------
Q 043068          282 MLMAK--------MRLN--GFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVME----------AN---------------  326 (526)
Q Consensus       282 ~~~~~--------~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~---------------  326 (526)
                      ++--+        ++..  .-..|+...+.-.+.++...++++|..++-...+          .|               
T Consensus      1056 elAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~K 1135 (1416)
T KOG3617|consen 1056 ELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTK 1135 (1416)
T ss_pred             HHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCc
Confidence            54211        1111  2234566667677777777777777766543321          11               


Q ss_pred             -CCCCHH----HHHHHHHHHHhcCChhHHHHHHHHH----------HHCCC-----------------------------
Q 043068          327 -MNPDVK----SYEVVINGFCKIGKSDEAISLLKEM----------RARGL-----------------------------  362 (526)
Q Consensus       327 -~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m----------~~~~~-----------------------------  362 (526)
                       -.|+..    ....+...|.++|.+..|-+-|.+.          .+.|-                             
T Consensus      1136 d~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDW 1215 (1416)
T KOG3617|consen 1136 DDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDW 1215 (1416)
T ss_pred             CCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhccc
Confidence             122322    3455667788888877765554432          22221                             


Q ss_pred             CCCHHHH-------------HHHHHHH---H------------HcCCHHHHHHHHHHcccCCC--------CcCHHHHHH
Q 043068          363 KPTVFSF-------------NAVFRIL---V------------ENGELDRAILLLKQMPQMDC--------LPNFVSYNT  406 (526)
Q Consensus       363 ~p~~~~~-------------~~li~~~---~------------~~g~~~~a~~~~~~~~~~~~--------~p~~~~~~~  406 (526)
                      +.++.+.             ..|..-|   +            ..|-.++|-+.+.++.....        +.+..-+-.
T Consensus      1216 q~~pq~mK~I~tFYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~ 1295 (1416)
T KOG3617|consen 1216 QDNPQTMKDIETFYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKV 1295 (1416)
T ss_pred             ccChHHHhhhHhhhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            1122221             2222222   1            11333444444444443210        011111222


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhh
Q 043068          407 IICGLCMAKGRMQDVEDLVDRMIRSGHNL----DFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNF  476 (526)
Q Consensus       407 ll~~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  476 (526)
                      .+...-....+..+...-...|.+...-|    -...|..|+..+....++..|-+.+.+|..+.+ ..+...|
T Consensus      1296 ~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p-~~~~s~~ 1368 (1416)
T KOG3617|consen 1296 QLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVP-NVDLSTF 1368 (1416)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCC-ccchhcc
Confidence            22221111234555555566666654433    346899999999999999999999999999887 5555544

>PLN02789 farnesyltranstransferase

Probab=98.86  E-value=3.4e-06  Score=78.88  Aligned_cols=211  Identities=11%  Similarity=0.098  Sum_probs=131.4

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068          127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVN-SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC  205 (526)
Q Consensus       127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~  205 (526)
                      +.+-..+...++.++|+.++++++...+ .+..+|+....++...| ++++++..++++.+.+  |.+..+|+...-.+.
T Consensus        41 ~~~ra~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~  117 (320)
T PLN02789         41 DYFRAVYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAE  117 (320)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHH
Confidence            3344455667788888888888887764 34556776666677777 5788888888888876  677777877666666


Q ss_pred             HcCCh--hhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCH-
Q 043068          206 KMGMI--ENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCIN---GRV-  277 (526)
Q Consensus       206 ~~g~~--~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~-  277 (526)
                      +.|+.  +++..+++++  ..+.|..+|+...-++.+.|+++++++.++++++.++. +...|+.....+.+.   |.. 
T Consensus       118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~  196 (320)
T PLN02789        118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE  196 (320)
T ss_pred             HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence            66652  5566666665  22346667777777777778888888888888877655 555666555444443   222 


Q ss_pred             ---HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043068          278 ---DEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV----GKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCK  343 (526)
Q Consensus       278 ---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~  343 (526)
                         ++.+.+..+++... +-+...|+-+...+...    +...+|.+.+.+....++. +......|++.|+.
T Consensus       197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~  267 (320)
T PLN02789        197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE  267 (320)
T ss_pred             ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence               34555555555443 44555665555555542    2334455555555544322 44555555555553

>PLN02789 farnesyltranstransferase

Probab=98.86  E-value=4.3e-06  Score=78.20  Aligned_cols=228  Identities=9%  Similarity=0.062  Sum_probs=130.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHc
Q 043068          231 TMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCING-RVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV  309 (526)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  309 (526)
                      .+-..+...++.++|+.++.++++.... +..+|+....++...| ++++++..++++.+.. +.+..+|+-....+.+.
T Consensus        42 ~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l  119 (320)
T PLN02789         42 YFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL  119 (320)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence            3334444556667777777776665222 3334444444455555 4567777777666554 44444555444444445


Q ss_pred             CCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CC---
Q 043068          310 GKF--DQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVEN---GE---  381 (526)
Q Consensus       310 g~~--~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~---  381 (526)
                      |+.  ++++.+++++++.+.+ |..+|+...-.+...|+++++++.++++++.+.. +...|+.....+.+.   |.   
T Consensus       120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~  197 (320)
T PLN02789        120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEA  197 (320)
T ss_pred             CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccc
Confidence            542  5566677777766554 6667777777777777777777777777766433 444555554444433   22   


Q ss_pred             -HHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC------
Q 043068          382 -LDRAILLLKQMPQMDCLPNFVSYNTIICGLCMA---KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEG------  451 (526)
Q Consensus       382 -~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------  451 (526)
                       .++.+++..+++... +-|...|+-+...+...   .++..+|.+.+.+..+.++. +......|++.|+...      
T Consensus       198 ~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~  275 (320)
T PLN02789        198 MRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEF  275 (320)
T ss_pred             cHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhh
Confidence             235566665655532 12344455554444331   13345677777776665433 6667777777776532      


Q ss_pred             ------------CHHHHHHHHHHHH
Q 043068          452 ------------NVENVMQIAHEMV  464 (526)
Q Consensus       452 ------------~~~~a~~~~~~m~  464 (526)
                                  ..++|.++++.+.
T Consensus       276 ~~~~~~~~~~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        276 RDTVDTLAEELSDSTLAQAVCSELE  300 (320)
T ss_pred             hhhhhccccccccHHHHHHHHHHHH
Confidence                        3467888888884

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.83  E-value=1.6e-05  Score=80.94  Aligned_cols=385  Identities=12%  Similarity=0.068  Sum_probs=226.9

Q ss_pred             cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHcCCCHHH
Q 043068           65 QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDF---FISKLIKAYGDRGNVKA  141 (526)
Q Consensus        65 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~  141 (526)
                      ..+...|+..|-++.+..+      .-..+|..+++.|....+...|...|++.-..|+.   ....+.+.|++..+++.
T Consensus       471 rK~~~~al~ali~alrld~------~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~  544 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDV------SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEE  544 (1238)
T ss_pred             hhhHHHHHHHHHHHHhccc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHH
Confidence            4557788999998887654      12446999999999888899999999988776654   56788999999999999


Q ss_pred             HHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068          142 AIFWFHQAKQIENG-ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM  220 (526)
Q Consensus       142 A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  220 (526)
                      |..+.-..-+..+. .....|....-.|.+.++...|+.-|+...+..  |.|...|..+..+|.+.|++..|.++|.+.
T Consensus       545 a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kA  622 (1238)
T KOG1127|consen  545 AFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKA  622 (1238)
T ss_pred             HHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence            99884443332211 113345555666788899999999999999887  889999999999999999999999999988


Q ss_pred             -CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----
Q 043068          221 -TVKPNLL-AYNTMINGFCKKGELEEAKKCMNEMMNR------GCRPNELTYNAMIYGLCINGRVDEAKMLMAKM-----  287 (526)
Q Consensus       221 -~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~-----  287 (526)
                       .+.|+.. .-.-.....+..|.+.+|+..+......      +..--..++..+...+.-.|-..+|.++++.-     
T Consensus       623 s~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~  702 (1238)
T KOG1127|consen  623 SLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI  702 (1238)
T ss_pred             HhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence             3455432 2222334567789999999998877653      11111223333333333334333344433332     


Q ss_pred             --HHcCCCCCHHhHHHHHHHHHHcCCHH------HHHHHHH-HHHHcCCC--------------------CCHHHHHHHH
Q 043068          288 --RLNGFKDNVSTHKSMLKGLCVVGKFD------QAVGYLR-NVMEANMN--------------------PDVKSYEVVI  338 (526)
Q Consensus       288 --~~~~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~-~~~~~~~~--------------------~~~~~~~~li  338 (526)
                        ..+....+...|..+-++|.-.-..+      ....++. +....+.-                    .+..+|..++
T Consensus       703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLG  782 (1238)
T KOG1127|consen  703 VSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLG  782 (1238)
T ss_pred             HHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHh
Confidence              22221222223322222221110000      0000110 01111111                    1122233333


Q ss_pred             HHHHh----cC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 043068          339 NGFCK----IG----KSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICG  410 (526)
Q Consensus       339 ~~~~~----~g----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~  410 (526)
                      ..|.+    .|    +...|+..+.+.++.. .-+..+|++|--. ...|++.-|.-.|-+-.... +....+|..+- .
T Consensus       783 inylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~Nlg-v  858 (1238)
T KOG1127|consen  783 INYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLG-V  858 (1238)
T ss_pred             HHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccc-e
Confidence            22222    11    2235666666655442 2245566655444 55566666666555444321 12333444443 3


Q ss_pred             HHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 043068          411 LCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHE  462 (526)
Q Consensus       411 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  462 (526)
                      +|-.+.+++.|...|.+.....+. +...|-.........|+.-++..+|..
T Consensus       859 L~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaH  909 (1238)
T KOG1127|consen  859 LVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAH  909 (1238)
T ss_pred             eEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            344557888888888887765433 556666666666677877777777776

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.79  E-value=7.1e-07  Score=88.47  Aligned_cols=304  Identities=16%  Similarity=0.158  Sum_probs=168.5

Q ss_pred             HHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCC------------CCCHHHHHHHHHH
Q 043068          168 LVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTV------------KPNLLAYNTMING  235 (526)
Q Consensus       168 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~p~~~~~~~li~~  235 (526)
                      |...|+.+.|.+-.+.+.       +..+|..+.+.+.+..++|-|.-.+..|+.            .|+ .+=.-..-.
T Consensus       738 yvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL  809 (1416)
T KOG3617|consen  738 YVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL  809 (1416)
T ss_pred             EEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence            344455555544444332       223555555555555555555554444411            111 111112222


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHH
Q 043068          236 FCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQA  315 (526)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  315 (526)
                      ....|.+++|+.+|.+-+.         |..|=..|-..|.|++|.++-+.--..   -=..||......+-..++.+.|
T Consensus       810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~A  877 (1416)
T KOG3617|consen  810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAA  877 (1416)
T ss_pred             HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHH
Confidence            3456778888888877654         333444566778888887776542111   1124566666666677788888


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccC
Q 043068          316 VGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQM  395 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  395 (526)
                      ++.|++....    -...+..|      ..++.....+.+++.      |...|......+...|+.|.|+.+|....+ 
T Consensus       878 leyyEK~~~h----afev~rmL------~e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-  940 (1416)
T KOG3617|consen  878 LEYYEKAGVH----AFEVFRML------KEYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD-  940 (1416)
T ss_pred             HHHHHhcCCh----HHHHHHHH------HhChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence            8877764221    11111111      122333333334433      445566666666778889999888887665 


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCccch
Q 043068          396 DCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKK--GRLLKL  473 (526)
Q Consensus       396 ~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~  473 (526)
                              |-++++..|.. |+.++|-++.++-   |   |......|.+.|...|++.+|...|-+.....  ++.-..
T Consensus       941 --------~fs~VrI~C~q-Gk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKE 1005 (1416)
T KOG3617|consen  941 --------YFSMVRIKCIQ-GKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKE 1005 (1416)
T ss_pred             --------hhhheeeEeec-cCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                    55666677776 8888888877653   2   66667778888888899988888887765432  222222


Q ss_pred             hhhHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHH----hcCCcccceeccC
Q 043068          474 KNFLTRVVDALLLMWIVTGGSWISRFVFVHQVVVIMERTV----EDGKRSECLIVSF  526 (526)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~  526 (526)
                      ..+-..+...++.   ..|...+++..-.++.-..+.+|+    .-|.+.++|++||
T Consensus      1006 nd~~d~L~nlal~---s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF 1059 (1416)
T KOG3617|consen 1006 NDMKDRLANLALM---SGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAF 1059 (1416)
T ss_pred             cCHHHHHHHHHhh---cCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHH
Confidence            2222222222222   233334444443444444455554    4578888888776

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.78  E-value=9.9e-07  Score=84.50  Aligned_cols=253  Identities=13%  Similarity=0.067  Sum_probs=174.2

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 043068          130 IKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGM  209 (526)
Q Consensus       130 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  209 (526)
                      ...+.+.|+..+|.-.|+.....++ .+...|..|.......++-..|+..+.+.++..  |.|....-.|.-.|...|.
T Consensus       292 G~~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  292 GCNLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhh
Confidence            3445677888888888888877764 467888888888888888888888888888876  7788888888888888888


Q ss_pred             hhhHHHHHHhC-CCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCH
Q 043068          210 IENAKKVFDVM-TVKP----------NLLAYNTMINGFCKKGELEEAKKCMNEMM-NRGCRPNELTYNAMIYGLCINGRV  277 (526)
Q Consensus       210 ~~~A~~~~~~~-~~~p----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~  277 (526)
                      -..|.+.++.- ...|          +...-..  ..+.....+....++|-++. +.+..+|......|.-.|--.|++
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef  446 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF  446 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence            88888877664 1010          0000000  11222233445555555554 344446777777777778888888


Q ss_pred             HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068          278 DEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEM  357 (526)
Q Consensus       278 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  357 (526)
                      ++|.+.|+.++... +-|...||.|...++...+.++|+..|.+.++..+. -+++...|.-.|...|.+++|.+.|-..
T Consensus       447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            88888888887765 667778888888888888888888888888886433 2344555666788888888888877765


Q ss_pred             HHC---------CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043068          358 RAR---------GLKPTVFSFNAVFRILVENGELDRAILLL  389 (526)
Q Consensus       358 ~~~---------~~~p~~~~~~~li~~~~~~g~~~~a~~~~  389 (526)
                      +..         +..++...|..|=.++.-.++.|-+.+..
T Consensus       525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~  565 (579)
T KOG1125|consen  525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA  565 (579)
T ss_pred             HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence            431         12234567777766777777776554443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=0.00024  Score=72.75  Aligned_cols=257  Identities=11%  Similarity=0.147  Sum_probs=173.2

Q ss_pred             HHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcC
Q 043068           57 IVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDR  136 (526)
Q Consensus        57 ~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~  136 (526)
                      ...+.+...+-|.+-+++++.+.-.   +..|+.....-+.++-.-.+..+ ..+-+.+++...-|..   .+.......
T Consensus       989 ~tVkAfMtadLp~eLIELLEKIvL~---~S~Fse~~nLQnLLiLtAikad~-trVm~YI~rLdnyDa~---~ia~iai~~ 1061 (1666)
T KOG0985|consen  989 VTVKAFMTADLPNELIELLEKIVLD---NSVFSENRNLQNLLILTAIKADR-TRVMEYINRLDNYDAP---DIAEIAIEN 1061 (1666)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHhcC---CcccccchhhhhhHHHHHhhcCh-HHHHHHHHHhccCCch---hHHHHHhhh
Confidence            3445556666677778888877632   23454444444444444344332 2333344443322221   234445567


Q ss_pred             CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHH
Q 043068          137 GNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKV  216 (526)
Q Consensus       137 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  216 (526)
                      +-+++|..+|++.-     .+..+.+.|+.   ..+.++.|.+.-++.-       ....|..+..+-.+.|.+.+|++-
T Consensus      1062 ~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred             hHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHHHH
Confidence            77899999988643     34555555553   3467777777766542       346899999999999999999998


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 043068          217 FDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNV  296 (526)
Q Consensus       217 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~  296 (526)
                      |-+..   |...|..+++...+.|.+++-.+.+...+++.-+|...  +.|+-+|++.++..+.++++.       -|+.
T Consensus      1127 yikad---Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~ 1194 (1666)
T KOG0985|consen 1127 YIKAD---DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNV 1194 (1666)
T ss_pred             HHhcC---CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCc
Confidence            87754   67789999999999999999999998888776666544  477889999999888766652       4777


Q ss_pred             HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043068          297 STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKE  356 (526)
Q Consensus       297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  356 (526)
                      .....+.+-|...|.++.|.-+|..+         ..|..|...+...|++..|.+.-++
T Consensus      1195 A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred             hhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            77777888888888888887766543         3366777777777777776655444

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.77  E-value=4.4e-06  Score=82.07  Aligned_cols=317  Identities=15%  Similarity=0.130  Sum_probs=173.5

Q ss_pred             HHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 043068           97 AITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKL  176 (526)
Q Consensus        97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  176 (526)
                      +..+.+...|+-+.|-++-+..+.    . -+-|..|.+.|.+.+|......-...  ..|......+..++.+..-+++
T Consensus       594 sy~q~l~dt~qd~ka~elk~sdgd----~-laaiqlyika~~p~~a~~~a~n~~~l--~~de~il~~ia~alik~elydk  666 (1636)
T KOG3616|consen  594 SYLQALMDTGQDEKAAELKESDGD----G-LAAIQLYIKAGKPAKAARAALNDEEL--LADEEILEHIAAALIKGELYDK  666 (1636)
T ss_pred             HHHHHHHhcCchhhhhhhccccCc----c-HHHHHHHHHcCCchHHHHhhcCHHHh--hccHHHHHHHHHHHHhhHHHHh
Confidence            344555667777777665443322    1 23466777888877776543221111  1334444444444444444444


Q ss_pred             HHHHHHHHHHc---------C------------CCCCCHHHH-HHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHH
Q 043068          177 AEEFFHQIVKE---------N------------VVPPDVSTY-TTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMIN  234 (526)
Q Consensus       177 A~~~~~~~~~~---------~------------~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~  234 (526)
                      |-++|+.+..-         |            ..|..+++. ......+...|+++.|...|-+..      .....+.
T Consensus       667 agdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~------~~~kaie  740 (1636)
T KOG3616|consen  667 AGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN------CLIKAIE  740 (1636)
T ss_pred             hhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh------hHHHHHH
Confidence            44444443210         0            011111111 111222233444444444443332      1112344


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHH
Q 043068          235 GFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQ  314 (526)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  314 (526)
                      +.....+|.+|+.+++.+.+...  -.--|..+...|+..|+++.|+++|.+.-         .++-.|.+|.+.|++++
T Consensus       741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d  809 (1636)
T KOG3616|consen  741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED  809 (1636)
T ss_pred             HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence            45566777778877777766532  23346677777888888888888876532         24456778888888888


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068          315 AVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQ  394 (526)
Q Consensus       315 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  394 (526)
                      |.++-.+..  |.......|.+-..-.-++|++.+|.++|-.+.    .|+     ..|.+|-+.|..+..+++.++...
T Consensus       810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~  878 (1636)
T KOG3616|consen  810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG  878 (1636)
T ss_pred             HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence            877655543  334455566666666777788888777765443    233     346677778888777777766543


Q ss_pred             CCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 043068          395 MDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAH  461 (526)
Q Consensus       395 ~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  461 (526)
                      ..+.   .|...+..-+-. .|++.+|+..|-+.-         -|.+-++.|...+-|++|.++.+
T Consensus       879 d~l~---dt~~~f~~e~e~-~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak  932 (1636)
T KOG3616|consen  879 DHLH---DTHKHFAKELEA-EGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK  932 (1636)
T ss_pred             hhhh---HHHHHHHHHHHh-ccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence            2222   223333333333 488888877665542         24555666777777777766543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.76  E-value=5.4e-06  Score=87.06  Aligned_cols=231  Identities=13%  Similarity=0.094  Sum_probs=131.9

Q ss_pred             CCCHHHHHHHHHHHHHcCChhhHHHHHHhC--CCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043068          191 PPDVSTYTTMIRGYCKMGMIENAKKVFDVM--TVK-----PNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELT  263 (526)
Q Consensus       191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  263 (526)
                      |.+...|-..|..+...+++++|.+++++.  .+.     .-...|.++++.-..-|.-+...++|+++.+. +. .-..
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-cd-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-CD-AYTV 1532 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-cc-hHHH
Confidence            455556666666666666666666666665  111     11234555555555556666666666666654 11 2344


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 043068          264 YNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNP-DVKSYEVVINGFC  342 (526)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~  342 (526)
                      |..|...|.+.+++++|.++++.|.+.- .....+|...+..+.+..+-+.|..++.+.++.-++. ........+..-.
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence            6666666666667777777777666542 2455566666666666666666666666666542221 2223344444555


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhcCCCHHH
Q 043068          343 KIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN--FVSYNTIICGLCMAKGRMQD  420 (526)
Q Consensus       343 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~g~~~~  420 (526)
                      +.|+.+.+..+|+...... +--...|+.++++-.++|+.+.+..+|++....++.|-  -..|...+ .|-+.+|+-+.
T Consensus      1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL-eyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL-EYEKSHGDEKN 1689 (1710)
T ss_pred             hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH-HHHHhcCchhh
Confidence            6667777777776665542 22345666677776777777777777777666555544  23444444 23444455444


Q ss_pred             HHHHHH
Q 043068          421 VEDLVD  426 (526)
Q Consensus       421 a~~~~~  426 (526)
                      ++.+=.
T Consensus      1690 vE~VKa 1695 (1710)
T KOG1070|consen 1690 VEYVKA 1695 (1710)
T ss_pred             HHHHHH
Confidence            444333

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.75  E-value=1.1e-06  Score=84.10  Aligned_cols=254  Identities=16%  Similarity=0.125  Sum_probs=189.7

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 043068          164 LLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGE  241 (526)
Q Consensus       164 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~  241 (526)
                      ....+.+.|++.+|.-.|+..++.+  |.+...|..|.......++-..|+..+.+. .+.| |....-.|.-.|...|.
T Consensus       291 eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  291 EGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            3446778999999999999999998  889999999999999999999999988886 5555 57788889999999999


Q ss_pred             HHHHHHHHHHHHHcCC------C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCCHHhHHHHHHHHHHcCCH
Q 043068          242 LEEAKKCMNEMMNRGC------R--PNELTYNAMIYGLCINGRVDEAKMLMAKM-RLNGFKDNVSTHKSMLKGLCVVGKF  312 (526)
Q Consensus       242 ~~~A~~~~~~m~~~g~------~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~  312 (526)
                      -.+|+++++..+...+      .  ++...-..  ..+.....+....++|-++ ...+..+|..+...|.-.|.-.|++
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef  446 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF  446 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence            9999999998865421      0  01110000  1111222233444455444 4555558888999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068          313 DQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV-FSFNAVFRILVENGELDRAILLLKQ  391 (526)
Q Consensus       313 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~  391 (526)
                      ++|...|+..+...+. |...||.|...++...+.++|+..|++.++.  +|+- .+...|..+|...|.+++|.+.|-+
T Consensus       447 draiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  447 DRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE  523 (579)
T ss_pred             HHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence            9999999999998655 8889999999999999999999999999986  6663 3556677789999999999999877


Q ss_pred             ccc---C------CCCcCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 043068          392 MPQ---M------DCLPNFVSYNTIICGLCMAKGRMQDVEDLV  425 (526)
Q Consensus       392 ~~~---~------~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~  425 (526)
                      .+.   .      ...++...|..|-.++.. .++.+-+.+..
T Consensus       524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~-~~~~D~l~~a~  565 (579)
T KOG1125|consen  524 ALSMQRKSRNHNKAPMASENIWQTLRLALSA-MNRSDLLQEAA  565 (579)
T ss_pred             HHHhhhcccccccCCcchHHHHHHHHHHHHH-cCCchHHHHhc
Confidence            653   1      112334566665544433 36666555444

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.75  E-value=6e-06  Score=86.75  Aligned_cols=245  Identities=16%  Similarity=0.121  Sum_probs=176.4

Q ss_pred             hHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 043068          212 NAKKVFDVMTVKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN-----ELTYNAMIYGLCINGRVDEAKMLMA  285 (526)
Q Consensus       212 ~A~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~  285 (526)
                      .|..+-....-.| +...|-..|......++.++|.+++++.+.. +.+.     .-.|.++++.-..-|.-+...++|+
T Consensus      1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred             CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence            3444333333244 4557888888888899999999999888764 2221     2356666666666777788888898


Q ss_pred             HHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 043068          286 KMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPT  365 (526)
Q Consensus       286 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  365 (526)
                      ++.+.  .....+|..|...|.+.+++++|.++++.|.+.-- -....|...+..+.++++-++|..++.+..+.  -|.
T Consensus      1522 RAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk 1596 (1710)
T KOG1070|consen 1522 RACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPK 1596 (1710)
T ss_pred             HHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cch
Confidence            88764  34456788888999999999999999999988632 36678888899999998889999999888764  333


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH--HHH
Q 043068          366 ---VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDF--TMY  440 (526)
Q Consensus       366 ---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~  440 (526)
                         .......+..-.+.|+.+.+..+|+...... +-....|+..++.-.+ +|+.+.++.+|++.+..++.|--  ..|
T Consensus      1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik-~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIK-HGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred             hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHc-cCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence               3345556666678899999999998887642 2345678888888655 48899999999999988877654  366


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHH
Q 043068          441 SCLLKGYCEEGNVENVMQIAHEMV  464 (526)
Q Consensus       441 ~~l~~~~~~~g~~~~a~~~~~~m~  464 (526)
                      ...+..=-.+|+-+.++.+=.++.
T Consensus      1675 KkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred             HHHHHHHHhcCchhhHHHHHHHHH
Confidence            666666666777665555544443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.75  E-value=1.9e-05  Score=80.53  Aligned_cols=390  Identities=12%  Similarity=0.030  Sum_probs=238.5

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHH-----HHHHHH
Q 043068           56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDF-----FISKLI  130 (526)
Q Consensus        56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~li  130 (526)
                      ..+..+++..-|..+|.+-|+.+.+.++.      ...+...+++.+++...+++|..+.-.....++.     -|-...
T Consensus       496 ~~LG~iYrd~~Dm~RA~kCf~KAFeLDat------daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG  569 (1238)
T KOG1127|consen  496 AFLGQIYRDSDDMKRAKKCFDKAFELDAT------DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRG  569 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCch------hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcc
Confidence            35666777666888899999999877542      2345788899999999999999886544433322     233355


Q ss_pred             HHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh
Q 043068          131 KAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMI  210 (526)
Q Consensus       131 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  210 (526)
                      -.|.+.+++.+|+..|+...+.++ .|...|..+..+|.+.|++..|.++|.+...-.  |.+...-.-.....|..|.+
T Consensus       570 ~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~GkY  646 (1238)
T KOG1127|consen  570 PYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNGKY  646 (1238)
T ss_pred             ccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhhhH
Confidence            568889999999999999988775 678999999999999999999999999988765  55555544555667788999


Q ss_pred             hhHHHHHHhC---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHcCCCCCHHHHHHHHHHHH--
Q 043068          211 ENAKKVFDVM---------TVKPNLLAYNTMINGFCKKGELEEAKKCMNEM-------MNRGCRPNELTYNAMIYGLC--  272 (526)
Q Consensus       211 ~~A~~~~~~~---------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~g~~p~~~~~~~li~~~~--  272 (526)
                      .+|...++..         +...-..++-.+...+.-.|-..+|.+++++-       ......-+...|-.+-.+|.  
T Consensus       647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f  726 (1238)
T KOG1127|consen  647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF  726 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence            9999888776         11111223333333333333333333333332       22211112222222222211  


Q ss_pred             ---------------------HcCCH---H---HHHHHHHHHHHcCCCCCHHhHHHHHHHHHH----c----CCHHHHHH
Q 043068          273 ---------------------INGRV---D---EAKMLMAKMRLNGFKDNVSTHKSMLKGLCV----V----GKFDQAVG  317 (526)
Q Consensus       273 ---------------------~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~----g~~~~A~~  317 (526)
                                           ..+..   +   -+.+.+-.-.  .+..+..+|..++..|.+    .    .+...|..
T Consensus       727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~  804 (1238)
T KOG1127|consen  727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIR  804 (1238)
T ss_pred             HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHH
Confidence                                 11111   1   0111111111  112234455555554444    1    22346777


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCC
Q 043068          318 YLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDC  397 (526)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  397 (526)
                      .+.+.++..-. +..+|+.|.-. ...|++.-|.-.|-+-.... +-...+|..+...+.+..+++.|...|.....  +
T Consensus       805 c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--L  879 (1238)
T KOG1127|consen  805 CCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--L  879 (1238)
T ss_pred             HHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh--c
Confidence            77777665433 67778877655 56677777777666555442 23566888888889999999999999999887  4


Q ss_pred             CcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 043068          398 LPNFVSYNTIICGLCMAKGRMQDVEDLVDRMI----RSGHNLDFTMYSCLLKGYCEEGNVENVMQIAH  461 (526)
Q Consensus       398 ~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~----~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  461 (526)
                      .|+...-..=...+..+.|+.-++..+|..--    ..|-.++...|-+...-....|+.++-+...+
T Consensus       880 dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~  947 (1238)
T KOG1127|consen  880 DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTAR  947 (1238)
T ss_pred             CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhh
Confidence            46543322222223344577888888877622    22445566666666556666777665444433

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.74  E-value=2.7e-05  Score=76.76  Aligned_cols=338  Identities=14%  Similarity=0.075  Sum_probs=207.1

Q ss_pred             cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCH-HHHHHHHHHHHcCCCHHHHH
Q 043068           65 QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSD-FFISKLIKAYGDRGNVKAAI  143 (526)
Q Consensus        65 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~  143 (526)
                      ..+++.|..+|-.   ++.           ....+-.|..-.++++|..+.+..+.|.- ..-.+.++++...|+-++|-
T Consensus       544 ~kkfk~ae~ifle---qn~-----------te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~  609 (1636)
T KOG3616|consen  544 EKKFKEAEMIFLE---QNA-----------TEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAA  609 (1636)
T ss_pred             HhhhhHHHHHHHh---ccc-----------HHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhh
Confidence            4567788877742   211           23345566667889999999886665443 34456777888888888876


Q ss_pred             HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCC-
Q 043068          144 FWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTV-  222 (526)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-  222 (526)
                      ++-+    .    +-.+ -+.|..|.+.|.+-.|.+....=..   +..|......+..++.+..-+++|-.+|+++.. 
T Consensus       610 elk~----s----dgd~-laaiqlyika~~p~~a~~~a~n~~~---l~~de~il~~ia~alik~elydkagdlfeki~d~  677 (1636)
T KOG3616|consen  610 ELKE----S----DGDG-LAAIQLYIKAGKPAKAARAALNDEE---LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF  677 (1636)
T ss_pred             hhcc----c----cCcc-HHHHHHHHHcCCchHHHHhhcCHHH---hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH
Confidence            6422    1    1111 2467889999998887765432211   234555555555555555555555555555421 


Q ss_pred             ------------------------CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 043068          223 ------------------------KPNLLAY-NTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRV  277 (526)
Q Consensus       223 ------------------------~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  277 (526)
                                              +..+++. .....-+...|+++.|+.-|-+...         ....+.+......|
T Consensus       678 dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew  748 (1636)
T KOG3616|consen  678 DKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEW  748 (1636)
T ss_pred             HHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhh
Confidence                                    0111111 1122233334555555544433211         12334556677888


Q ss_pred             HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068          278 DEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEM  357 (526)
Q Consensus       278 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  357 (526)
                      .+|+.+++.+....  .-..-|..+.+.|...|+++.|.++|.+.-         .++-.|..|.+.|+|+.|.++-.+.
T Consensus       749 ~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~  817 (1636)
T KOG3616|consen  749 KKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC  817 (1636)
T ss_pred             hhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh
Confidence            89999988887653  233456778888999999999998886532         2566788899999999999887766


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH
Q 043068          358 RARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDF  437 (526)
Q Consensus       358 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~  437 (526)
                      ..  .......|-+-..-+-+.|++.+|.++|-.+-.    |+.     .|..|-+ .|..+...++.++-.-   ..-.
T Consensus       818 ~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk-~~~~ddmirlv~k~h~---d~l~  882 (1636)
T KOG3616|consen  818 HG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDK-HGLDDDMIRLVEKHHG---DHLH  882 (1636)
T ss_pred             cC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHh-hCcchHHHHHHHHhCh---hhhh
Confidence            53  233455666666677788999999888765543    543     2344444 4888888777765421   1123


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043068          438 TMYSCLLKGYCEEGNVENVMQIAHEM  463 (526)
Q Consensus       438 ~~~~~l~~~~~~~g~~~~a~~~~~~m  463 (526)
                      .|...+..-|...|+...|..-|-+.
T Consensus       883 dt~~~f~~e~e~~g~lkaae~~flea  908 (1636)
T KOG3616|consen  883 DTHKHFAKELEAEGDLKAAEEHFLEA  908 (1636)
T ss_pred             HHHHHHHHHHHhccChhHHHHHHHhh
Confidence            45666677777778887777665443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.72  E-value=0.00031  Score=67.33  Aligned_cols=153  Identities=11%  Similarity=0.086  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 043068          312 FDQAVGYLRNVMEA-NMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKP-TVFSFNAVFRILVENGELDRAILLL  389 (526)
Q Consensus       312 ~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~  389 (526)
                      .+....+++++... ...| ..+|..+++.-.+..-++.|..+|.+..+.+..+ ++.++++++.-||. ++.+-|.++|
T Consensus       347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF  424 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF  424 (656)
T ss_pred             hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence            55556666666554 2333 3467888888889999999999999999987777 67788888887765 7889999999


Q ss_pred             HHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 043068          390 KQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDF--TMYSCLLKGYCEEGNVENVMQIAHEMVTKK  467 (526)
Q Consensus       390 ~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  467 (526)
                      +.-.+.- ..+..--...++-+.. .++-..+..+|++.+..+..||.  .+|..++.-=..-|+...+.++-+++...-
T Consensus       425 eLGLkkf-~d~p~yv~~YldfL~~-lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af  502 (656)
T KOG1914|consen  425 ELGLKKF-GDSPEYVLKYLDFLSH-LNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF  502 (656)
T ss_pred             HHHHHhc-CCChHHHHHHHHHHHH-hCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence            9866531 1223333344444444 48889999999999998666554  699999999999999999999999988776


Q ss_pred             C
Q 043068          468 G  468 (526)
Q Consensus       468 ~  468 (526)
                      +
T Consensus       503 ~  503 (656)
T KOG1914|consen  503 P  503 (656)
T ss_pred             c
Confidence            6

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.68  E-value=2.1e-05  Score=82.07  Aligned_cols=58  Identities=14%  Similarity=0.137  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKM  287 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~  287 (526)
                      .+..++.+|-+.|+.++|..+|+++++.... |..+.|.+...|... ++++|+.++.++
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KA  175 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKA  175 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            3444444444444444454444444444322 344444444444444 444444444444

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.65  E-value=1.2e-05  Score=79.43  Aligned_cols=221  Identities=7%  Similarity=0.029  Sum_probs=173.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC  307 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  307 (526)
                      .-..+...+...|-...|..+|++..         .|.-.+.+|+..|+..+|..+..+..+.  +|+...|..+.+...
T Consensus       400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~  468 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH  468 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence            34567778888899999999998764         4666788999999999999998888773  788888888888777


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043068          308 VVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAIL  387 (526)
Q Consensus       308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  387 (526)
                      ...-+++|.++.+.....       +-..+.....+.++++++.+.|+.-.+.+ +....+|-.+-.+..+.++++.|.+
T Consensus       469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~  540 (777)
T KOG1128|consen  469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK  540 (777)
T ss_pred             ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence            777788888888765443       22223333345789999999998876653 2345678788888889999999999


Q ss_pred             HHHHcccCCCCcC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043068          388 LLKQMPQMDCLPN-FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTK  466 (526)
Q Consensus       388 ~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  466 (526)
                      .|.....  ..|| ...||.+-.++.+. |+-.+|...+.+..+.+.. +..+|...+....+.|.+++|++.++++.+.
T Consensus       541 aF~rcvt--L~Pd~~eaWnNls~ayi~~-~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  541 AFHRCVT--LEPDNAEAWNNLSTAYIRL-KKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             HHHHHhh--cCCCchhhhhhhhHHHHHH-hhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence            9999887  4466 56789998888876 9999999999999998844 7778888888899999999999999999876


Q ss_pred             CCCcc
Q 043068          467 KGRLL  471 (526)
Q Consensus       467 ~~~~~  471 (526)
                      .....
T Consensus       617 ~~~~~  621 (777)
T KOG1128|consen  617 RKKYK  621 (777)
T ss_pred             hhhcc
Confidence            65444

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.64  E-value=4.2e-06  Score=75.80  Aligned_cols=190  Identities=14%  Similarity=0.081  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-C-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHH---HHHH
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGA-C-LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVS---TYTT  199 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~  199 (526)
                      .+..++..+...|++++|...|+++....+.. . ..++..+..++.+.|++++|...++++++..  |.+..   ++..
T Consensus        35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~  112 (235)
T TIGR03302        35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYAYYL  112 (235)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHHHHH
Confidence            44455555556666666666666555444210 0 1244455555556666666666666665543  22221   2322


Q ss_pred             HHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHH
Q 043068          200 MIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE-LTYNAMIYGLCINGRVD  278 (526)
Q Consensus       200 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~  278 (526)
                      +..++.+.                        +...+...|+.++|.+.|+++...  .|+. ..+..+.... .   ..
T Consensus       113 ~g~~~~~~------------------------~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~  162 (235)
T TIGR03302       113 RGLSNYNQ------------------------IDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LR  162 (235)
T ss_pred             HHHHHHHh------------------------cccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HH
Confidence            33333221                        000111236677777777777765  2332 2222111110 0   00


Q ss_pred             HHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043068          279 EAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN--PDVKSYEVVINGFCKIGKSDEAISLLKE  356 (526)
Q Consensus       279 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~  356 (526)
                      ..      ..        .....+...|.+.|++++|...++...+....  .....+..+..++.+.|++++|...++.
T Consensus       163 ~~------~~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~  228 (235)
T TIGR03302       163 NR------LA--------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAV  228 (235)
T ss_pred             HH------HH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            00      00        01124556677788888888888887765321  2345677788888888888888887777


Q ss_pred             HHHC
Q 043068          357 MRAR  360 (526)
Q Consensus       357 m~~~  360 (526)
                      +...
T Consensus       229 l~~~  232 (235)
T TIGR03302       229 LGAN  232 (235)
T ss_pred             HHhh
Confidence            7654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12854 PPR_1: PPR repeat

Probab=98.63  E-value=6.8e-08  Score=56.71  Aligned_cols=32  Identities=28%  Similarity=0.566  Sum_probs=14.4

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 043068          361 GLKPTVFSFNAVFRILVENGELDRAILLLKQM  392 (526)
Q Consensus       361 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~  392 (526)
                      |+.||..||+.||.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            34444444444444444444444444444443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.63  E-value=1.4e-05  Score=69.43  Aligned_cols=123  Identities=16%  Similarity=0.075  Sum_probs=55.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043068          265 NAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKI  344 (526)
Q Consensus       265 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~  344 (526)
                      +..+....+.|++.+|...+.+..... ++|..+|+.+.-+|.+.|+++.|..-|.+..+..+. +...++.+...|.-.
T Consensus       104 ~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~  181 (257)
T COG5010         104 AAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLR  181 (257)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHc
Confidence            334444444444444444444444332 444444444444444444444444444444443222 333344444444444


Q ss_pred             CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043068          345 GKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLK  390 (526)
Q Consensus       345 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  390 (526)
                      |+.+.|..++......+.. |...-..+.......|++++|.++..
T Consensus       182 gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         182 GDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             CCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence            5555555555444443211 33344444444445555555544443

>PF12854 PPR_1: PPR repeat

Probab=98.63  E-value=5.7e-08  Score=57.05  Aligned_cols=32  Identities=34%  Similarity=0.800  Sum_probs=23.3

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043068          432 GHNLDFTMYSCLLKGYCEEGNVENVMQIAHEM  463 (526)
Q Consensus       432 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  463 (526)
                      |+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            56677777777777777777777777777766

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.62  E-value=1.6e-05  Score=69.29  Aligned_cols=154  Identities=10%  Similarity=0.156  Sum_probs=108.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 043068          302 MLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGE  381 (526)
Q Consensus       302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  381 (526)
                      -+..|...|+++.+....+.+...    .        ..+...++.++++..++...+.+ +.+...|..+...|...|+
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~   88 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND   88 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence            345677778777765443222211    0        01223566777777777776653 3467788888888889999


Q ss_pred             HHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 043068          382 LDRAILLLKQMPQMDCLPN-FVSYNTIICGLCMAKGR--MQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQ  458 (526)
Q Consensus       382 ~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  458 (526)
                      +++|...|++..+..  |+ ...+..+...+....|+  .++|.+++++.++.++. +...+..+...+.+.|++++|+.
T Consensus        89 ~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~  165 (198)
T PRK10370         89 YDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIE  165 (198)
T ss_pred             HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHH
Confidence            999999999888743  54 44455544444333366  58999999999987666 77888889999999999999999


Q ss_pred             HHHHHHHcCCCcc
Q 043068          459 IAHEMVTKKGRLL  471 (526)
Q Consensus       459 ~~~~m~~~~~~~~  471 (526)
                      .|+++++..+...
T Consensus       166 ~~~~aL~l~~~~~  178 (198)
T PRK10370        166 LWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHHHhhCCCCc
Confidence            9999988887443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.62  E-value=7.6e-06  Score=74.13  Aligned_cols=187  Identities=11%  Similarity=-0.003  Sum_probs=124.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHH
Q 043068          260 NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNV---STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDV--KSY  334 (526)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~  334 (526)
                      ....+..+...+.+.|++++|...++++.+.. +.+.   .++..+..++...|++++|...++++.+..+....  .++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            45667777778888899999999888887653 2222   45677788888889999999999888876443222  234


Q ss_pred             HHHHHHHHhc--------CChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHH
Q 043068          335 EVVINGFCKI--------GKSDEAISLLKEMRARGLKPTVF-SFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYN  405 (526)
Q Consensus       335 ~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  405 (526)
                      ..+..++...        |++++|.+.++.+...  .|+.. .+..+....    .......             . ...
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~----~~~~~~~-------------~-~~~  170 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD----YLRNRLA-------------G-KEL  170 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH----HHHHHHH-------------H-HHH
Confidence            4455555544        6778888888888765  34432 222221110    0110000             0 011


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          406 TIICGLCMAKGRMQDVEDLVDRMIRSGHN-L-DFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       406 ~ll~~~~~~~g~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                      .+...+... |++++|...++++++.... | ....+..++.++.+.|++++|...++.+....+
T Consensus       171 ~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       171 YVARFYLKR-GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHc-CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            233344554 9999999999999986432 2 357889999999999999999999998877664

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=0.00013  Score=63.55  Aligned_cols=248  Identities=14%  Similarity=0.103  Sum_probs=133.8

Q ss_pred             HHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043068          167 VLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAK  246 (526)
Q Consensus       167 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  246 (526)
                      -+.-.|.+..++..-......   +.+...-..+.++|...|.+.....-...-. .|.......+...+..-++.++-+
T Consensus        17 n~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~   92 (299)
T KOG3081|consen   17 NYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISEIKEGK-ATPLQAVRLLAEYLELESNKKSIL   92 (299)
T ss_pred             HHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccccccccc-CChHHHHHHHHHHhhCcchhHHHH
Confidence            344456666665554443322   2344445556667777777665544443333 344444444444444444444333


Q ss_pred             H-HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068          247 K-CMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA  325 (526)
Q Consensus       247 ~-~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  325 (526)
                      . +.+.+.......+......-...|+..|++++|++.....      .+......=+..+.+..+++-|.+.+++|.+-
T Consensus        93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i  166 (299)
T KOG3081|consen   93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI  166 (299)
T ss_pred             HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3 3334444333333333334445677777777777776652      12223333344556666777777777777764


Q ss_pred             CCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCH
Q 043068          326 NMNPDVKSYEVVINGFCK----IGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNF  401 (526)
Q Consensus       326 ~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~  401 (526)
                      .   +..+.+.|..++.+    .+...+|.-+|++|-++ ..|+..+.+....++...|++++|..++++.....- -++
T Consensus       167 d---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dp  241 (299)
T KOG3081|consen  167 D---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDP  241 (299)
T ss_pred             c---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCH
Confidence            2   44555556555543    34567777777777653 466777777777777777777777777777765431 233


Q ss_pred             HHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Q 043068          402 VSYNTIICGLCMAKGRM-QDVEDLVDRMIR  430 (526)
Q Consensus       402 ~~~~~ll~~~~~~~g~~-~~a~~~~~~~~~  430 (526)
                      .+...++...... |.. +-..+.+..+..
T Consensus       242 etL~Nliv~a~~~-Gkd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  242 ETLANLIVLALHL-GKDAEVTERNLSQLKL  270 (299)
T ss_pred             HHHHHHHHHHHHh-CCChHHHHHHHHHHHh
Confidence            3333333222222 443 333445555544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.60  E-value=1.1e-05  Score=70.16  Aligned_cols=155  Identities=9%  Similarity=0.092  Sum_probs=109.4

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068          129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG  208 (526)
Q Consensus       129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  208 (526)
                      -+..|...|+++.+....+.+..    +. .       .+...++.+++...++..++.+  |.|...|..+...|...|
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g   87 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRN   87 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCC
Confidence            34567788888877655533221    10 0       1122566777778888888776  788888888888888888


Q ss_pred             ChhhHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043068          209 MIENAKKVFDVM-TVKP-NLLAYNTMINGF-CKKGE--LEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKML  283 (526)
Q Consensus       209 ~~~~A~~~~~~~-~~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~  283 (526)
                      ++++|...|++. ...| +...+..+..++ ...|+  .++|.+++++..+.... +..++..+...+.+.|++++|+..
T Consensus        88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~  166 (198)
T PRK10370         88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL  166 (198)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence            888888888876 3333 566777777764 56666  48888888888887544 667777888888888888888888


Q ss_pred             HHHHHHcCCCCCHHhH
Q 043068          284 MAKMRLNGFKDNVSTH  299 (526)
Q Consensus       284 ~~~~~~~~~~~~~~~~  299 (526)
                      ++++.+.. +|+..-+
T Consensus       167 ~~~aL~l~-~~~~~r~  181 (198)
T PRK10370        167 WQKVLDLN-SPRVNRT  181 (198)
T ss_pred             HHHHHhhC-CCCccHH
Confidence            88887765 4544333

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=0.00028  Score=72.35  Aligned_cols=306  Identities=13%  Similarity=0.118  Sum_probs=182.6

Q ss_pred             CCChHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC------------
Q 043068           52 CLGSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN------------  119 (526)
Q Consensus        52 ~~~~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------  119 (526)
                      .+++..+ .-++..+||.-|.-.+++-.-. ..--+.......|...++.+.+..+.+.-.+++.+..            
T Consensus       898 yYDs~vV-GkYCEKRDP~lA~vaYerGqcD-~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~  975 (1666)
T KOG0985|consen  898 YYDSKVV-GKYCEKRDPHLACVAYERGQCD-LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQ  975 (1666)
T ss_pred             cchhhHH-hhhhcccCCceEEEeecccCCc-HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHH
Confidence            3444444 4556667777776666643311 0001122233457777888887777766555553211            


Q ss_pred             -----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 043068          120 -----KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENG--ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPP  192 (526)
Q Consensus       120 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~  192 (526)
                           ..+|...+.-++++...+-+.+-+++++++.-....  .+...-|.|+-...+. +..+..+..+++-.-+  .|
T Consensus       976 tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD--a~ 1052 (1666)
T KOG0985|consen  976 TALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD--AP 1052 (1666)
T ss_pred             hcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC--ch
Confidence                 245667778899999999999999999998632211  1122334444333333 3344455555543322  22


Q ss_pred             CHHHHHHHHHHHHHcCChhhHHHHHHhCCC------------------------CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043068          193 DVSTYTTMIRGYCKMGMIENAKKVFDVMTV------------------------KPNLLAYNTMINGFCKKGELEEAKKC  248 (526)
Q Consensus       193 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~p~~~~~~~li~~~~~~g~~~~A~~~  248 (526)
                      +.      .......+-+++|..+|++...                        -.....|..+..+-.+.|.+.+|++-
T Consensus      1053 ~i------a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1053 DI------AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred             hH------HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHH
Confidence            21      2223333444455554444310                        11344677777777778888888777


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 043068          249 MNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN  328 (526)
Q Consensus       249 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  328 (526)
                      |-+.-      |+..|..+++...+.|.|++-.+++...++..-.|.+  -+.++-+|++.++..+.++++       .-
T Consensus      1127 yikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~g 1191 (1666)
T KOG0985|consen 1127 YIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AG 1191 (1666)
T ss_pred             HHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cC
Confidence            64432      6677888888888888888888888777766544443  346777888888876655443       13


Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 043068          329 PDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQM  392 (526)
Q Consensus       329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~  392 (526)
                      ||......+.+-|...|.++.|.-+|...         .-|..|...+...|+++.|.+.-++.
T Consensus      1192 pN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1192 PNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred             CCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            56666677777777778887777666533         34666777777777777776655544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.59  E-value=1.3e-05  Score=69.75  Aligned_cols=120  Identities=14%  Similarity=0.202  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 043068          196 TYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCI  273 (526)
Q Consensus       196 ~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  273 (526)
                      ....++....+.|++..|...|.+.  .-++|...|+.+.-+|.+.|++++|..-|.+..+.... +...++.+.-.+.-
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L  180 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLL  180 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHH
Confidence            3333444444444444444444443  22333444444444444444444444444444433111 23333333334444


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHH
Q 043068          274 NGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVG  317 (526)
Q Consensus       274 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  317 (526)
                      .|+.+.|..++......+ .-|..+-..+.......|++++|..
T Consensus       181 ~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~  223 (257)
T COG5010         181 RGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED  223 (257)
T ss_pred             cCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence            444444444444443332 2233333334444444444444433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.59  E-value=3.6e-05  Score=79.51  Aligned_cols=141  Identities=10%  Similarity=0.040  Sum_probs=109.1

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHH
Q 043068          328 NPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPT-VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNT  406 (526)
Q Consensus       328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~  406 (526)
                      ..+...+..|.....+.|.+++|+.+++...+.  .|+ ......+...+.+.+++++|+..+++....  .|+......
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~  158 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL  158 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence            336778888888888888888888888888876  555 345667778888888899998888888874  377666666


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccch
Q 043068          407 IICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKL  473 (526)
Q Consensus       407 ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  473 (526)
                      +....+...|++++|..+|+++...++. +..++..+..++...|+.++|...|++.++....-...
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~  224 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK  224 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence            6655556668899999999988874433 57788888888888899999999998888876544444

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.59  E-value=2.9e-06  Score=83.54  Aligned_cols=215  Identities=14%  Similarity=0.122  Sum_probs=149.9

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068          126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC  205 (526)
Q Consensus       126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~  205 (526)
                      -..+...+.+.|-...|+.+|++..         .|.-++..|+..|+..+|..+..+..++   +||...|..+.+...
T Consensus       401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~~  468 (777)
T KOG1128|consen  401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVLH  468 (777)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhcc
Confidence            3456677777888888888887643         4566777888888888888887777763   678888877777776


Q ss_pred             HcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043068          206 KMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMA  285 (526)
Q Consensus       206 ~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~  285 (526)
                      ..--+++|.++++...    ...-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.++++.|.+.|.
T Consensus       469 d~s~yEkawElsn~~s----arA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~  543 (777)
T KOG1128|consen  469 DPSLYEKAWELSNYIS----ARAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFH  543 (777)
T ss_pred             ChHHHHHHHHHhhhhh----HHHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence            6666778888777642    1122222333344678888888887766553 2245667777777777888888888887


Q ss_pred             HHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068          286 KMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA  359 (526)
Q Consensus       286 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  359 (526)
                      ...... +.+...||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+-...+.|.+++|++.+.++..
T Consensus       544 rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  544 RCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            776543 455667888888888888888888888887776633 455566666667777888888888777754

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.57  E-value=4.1e-06  Score=68.93  Aligned_cols=118  Identities=8%  Similarity=-0.038  Sum_probs=88.7

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043068          351 ISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN-FVSYNTIICGLCMAKGRMQDVEDLVDRMI  429 (526)
Q Consensus       351 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~  429 (526)
                      ..++++..+.  .|+  .+..+...+.+.|++++|...|+.....  .|+ ...|..+...+. ..|++++|...|++.+
T Consensus        13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al   85 (144)
T PRK15359         13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWM-MLKEYTTAINFYGHAL   85 (144)
T ss_pred             HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHH
Confidence            3455555554  344  3556677888899999999999998874  354 444555544444 4599999999999999


Q ss_pred             HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhh
Q 043068          430 RSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNF  476 (526)
Q Consensus       430 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  476 (526)
                      +.++. +...+..+..++.+.|+.++|+..|++.++..+..+.....
T Consensus        86 ~l~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~  131 (144)
T PRK15359         86 MLDAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEI  131 (144)
T ss_pred             hcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            87654 78889999999999999999999999999999877765443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.56  E-value=4.5e-05  Score=78.76  Aligned_cols=205  Identities=12%  Similarity=0.071  Sum_probs=141.6

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068          129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG  208 (526)
Q Consensus       129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  208 (526)
                      ++...+.-....+++.-..... .....++..+-.|..+..+.|.+++|..+++.+.+..  |.+......++.++.+.+
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~  134 (694)
T PRK15179         58 VLERHAAVHKPAAALPELLDYV-RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQ  134 (694)
T ss_pred             HHHHhhhhcchHhhHHHHHHHH-HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhc
Confidence            3444333334444433333332 2233568888888899999999999999999998876  778888888999999999


Q ss_pred             ChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068          209 MIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAK  286 (526)
Q Consensus       209 ~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  286 (526)
                      ++++|....++. ...| +......+..++.+.|++++|..+|++....+. -+..++..+..++-..|+.++|...|+.
T Consensus       135 ~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~  213 (694)
T PRK15179        135 GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQA  213 (694)
T ss_pred             cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999998887 3344 456677788888899999999999999988432 2578888888889999999999999998


Q ss_pred             HHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhc
Q 043068          287 MRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA----NMNPDVKSYEVVINGFCKI  344 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~  344 (526)
                      ..+.. .+....|+..+.      +...-...++.+.-.    |......+...+|..|.+.
T Consensus       214 a~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (694)
T PRK15179        214 GLDAI-GDGARKLTRRLV------DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR  268 (694)
T ss_pred             HHHhh-CcchHHHHHHHH------HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence            87654 344455554432      333334445554432    2333344555666666544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.56  E-value=1.9e-06  Score=70.93  Aligned_cols=97  Identities=12%  Similarity=0.022  Sum_probs=52.3

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 043068          121 LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTM  200 (526)
Q Consensus       121 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  200 (526)
                      .++..+..+...+...|++++|...|+......+ .+...|..+..++.+.|++++|...|++..+.+  |.+..++..+
T Consensus        22 ~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p~~~~a~~~l   98 (144)
T PRK15359         22 VDPETVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--ASHPEPVYQT   98 (144)
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHH
Confidence            3333333444455555555555555555554443 345555555555555555555555555555544  4555555555


Q ss_pred             HHHHHHcCChhhHHHHHHhC
Q 043068          201 IRGYCKMGMIENAKKVFDVM  220 (526)
Q Consensus       201 i~~~~~~g~~~~A~~~~~~~  220 (526)
                      ..++.+.|+.++|.+.|+..
T Consensus        99 g~~l~~~g~~~eAi~~~~~A  118 (144)
T PRK15359         99 GVCLKMMGEPGLAREAFQTA  118 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            55555555555555555554

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.55  E-value=0.00098  Score=64.02  Aligned_cols=371  Identities=10%  Similarity=0.049  Sum_probs=214.7

Q ss_pred             CChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 043068           90 HTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLG  166 (526)
Q Consensus        90 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~  166 (526)
                      .+..+|+.|++-+... .+++++..+++..   +..+..|..-|..-....+++....+|.+....-  -+...|...+.
T Consensus        18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~   94 (656)
T KOG1914|consen   18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS   94 (656)
T ss_pred             ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence            4566788888876655 8888888888755   3346678888888888888888888888877544  34556666664


Q ss_pred             HHHhc-CChh----HHHHHHHHHHHcCCC-CCCHHHHHHHHHH---------HHHcCChhhHHHHHHhCCCCC--CH-HH
Q 043068          167 VLVRV-NSIK----LAEEFFHQIVKENVV-PPDVSTYTTMIRG---------YCKMGMIENAKKVFDVMTVKP--NL-LA  228 (526)
Q Consensus       167 ~~~~~-g~~~----~A~~~~~~~~~~~~~-~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~~p--~~-~~  228 (526)
                      --.+. |+..    ...+.|+-.+..-+. ..+-..|+..+..         |....+++...++++++-..|  +. ..
T Consensus        95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL  174 (656)
T KOG1914|consen   95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL  174 (656)
T ss_pred             HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence            33332 3322    233445544443222 2233345555433         233445666777787773333  22 13


Q ss_pred             HHHHHH-----------H--HHhcCCHHHHHHHHHHHHH--cCCCCCHHH---------------HHHHHHHHHHcCCHH
Q 043068          229 YNTMIN-----------G--FCKKGELEEAKKCMNEMMN--RGCRPNELT---------------YNAMIYGLCINGRVD  278 (526)
Q Consensus       229 ~~~li~-----------~--~~~~g~~~~A~~~~~~m~~--~g~~p~~~~---------------~~~li~~~~~~g~~~  278 (526)
                      |+-...           -  --+...+-.|.++++++..  +|..-...+               |..+|.- -+.+-..
T Consensus       175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNpL~  253 (656)
T KOG1914|consen  175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNPLR  253 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCCcc
Confidence            332111           0  0113355666667666643  344322222               3333321 1111100


Q ss_pred             ---------HHHHHHHHH-HHcCCCCCHHhHH-----HHHHHHHHcCC-------HHHHHHHHHHHHHcCCCCCHHHHHH
Q 043068          279 ---------EAKMLMAKM-RLNGFKDNVSTHK-----SMLKGLCVVGK-------FDQAVGYLRNVMEANMNPDVKSYEV  336 (526)
Q Consensus       279 ---------~a~~~~~~~-~~~~~~~~~~~~~-----~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~  336 (526)
                               ...-.+++. .-.+..|++....     ..-+.+...|+       .+++..+++..++.-..-+..+|..
T Consensus       254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~  333 (656)
T KOG1914|consen  254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA  333 (656)
T ss_pred             cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     111112221 1122333322111     11122333333       4455566665554322223444444


Q ss_pred             HHHHHHhcC---ChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCc-CHHHHHHHHHHH
Q 043068          337 VINGFCKIG---KSDEAISLLKEMRARG-LKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLP-NFVSYNTIICGL  411 (526)
Q Consensus       337 li~~~~~~g---~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~  411 (526)
                      +.+.--..-   +.+..-..++++...- ..| ..+|..+++.--+...++.|..+|.++.+.+..+ ++..+++++.-+
T Consensus       334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~  412 (656)
T KOG1914|consen  334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY  412 (656)
T ss_pred             HHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence            433222111   3556666777765542 333 3478888998889999999999999999877666 788899999988


Q ss_pred             HhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          412 CMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       412 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                      |.  ++.+-|.++|+--+++ +.-++..-...++-+...++-..|..+|++.++.+.
T Consensus       413 cs--kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l  466 (656)
T KOG1914|consen  413 CS--KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL  466 (656)
T ss_pred             hc--CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence            85  7999999999987775 444566667788888899999999999999998843

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=6.8e-05  Score=65.30  Aligned_cols=119  Identities=13%  Similarity=0.155  Sum_probs=56.2

Q ss_pred             HHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCC
Q 043068          201 IRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCI----NGR  276 (526)
Q Consensus       201 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~  276 (526)
                      ...|++.|++++|++.....   -+......=+..+.+..+++-|.+.+++|.+..   +..|.+.|..++.+    .+.
T Consensus       115 a~i~~~~~~~deAl~~~~~~---~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek  188 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLG---ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEK  188 (299)
T ss_pred             hHHhhcCCChHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchh
Confidence            34455555555555555542   123333333344445555555555555555431   33444444444433    233


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043068          277 VDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN  326 (526)
Q Consensus       277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  326 (526)
                      +.+|.-+|++|-+. .+|+..+.+-.+.++...|++++|..+++......
T Consensus       189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd  237 (299)
T KOG3081|consen  189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD  237 (299)
T ss_pred             hhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence            44555555555432 24445555555555555555555555555555443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.49  E-value=0.00014  Score=76.03  Aligned_cols=234  Identities=11%  Similarity=0.076  Sum_probs=157.7

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 043068           56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGD  135 (526)
Q Consensus        56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~  135 (526)
                      ..|+..+...+++++|++..+......|+...      .|..++.++.+.++.+.+..+             .++.....
T Consensus        35 ~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~------~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~   95 (906)
T PRK14720         35 DDLIDAYKSENLTDEAKDICEEHLKEHKKSIS------ALYISGILSLSRRPLNDSNLL-------------NLIDSFSQ   95 (906)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCccee------hHHHHHHHHHhhcchhhhhhh-------------hhhhhccc
Confidence            45677777899999999999988876664332      366666677777765544332             45555566


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHH
Q 043068          136 RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKK  215 (526)
Q Consensus       136 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  215 (526)
                      ..++.....+...+...+  .+..++-.+..+|-+.|+.++|..+++++++..  +.|..+.|.+...|... ++++|.+
T Consensus        96 ~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~  170 (906)
T PRK14720         96 NLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAIT  170 (906)
T ss_pred             ccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHH
Confidence            666755555555555543  456688889999999999999999999999987  88999999999999999 9999998


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 043068          216 VFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN  295 (526)
Q Consensus       216 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~  295 (526)
                      ++.+.            +..+...+++.++.++|.++....+. +...+..+.+.....-               |..--
T Consensus       171 m~~KA------------V~~~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~---------------~~~~~  222 (906)
T PRK14720        171 YLKKA------------IYRFIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR---------------EFTRL  222 (906)
T ss_pred             HHHHH------------HHHHHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh---------------ccchh
Confidence            88763            22366777888888888888876322 2222222222222111               11122


Q ss_pred             HHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043068          296 VSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC  342 (526)
Q Consensus       296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~  342 (526)
                      +.++--+-..|-..++++++..+++.+.+.... |..+..-++..|.
T Consensus       223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~  268 (906)
T PRK14720        223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence            233444555666677777777777777776544 5555666666654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.45  E-value=0.00019  Score=68.03  Aligned_cols=195  Identities=14%  Similarity=0.110  Sum_probs=130.8

Q ss_pred             CHHHHHHHHHhcCC------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 043068          107 LISIAASLLKNSNK------LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEF  180 (526)
Q Consensus       107 ~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  180 (526)
                      ++..+++..+.++.      ++.......+.+......-..+..++.+..+  ..-..--|. ....+...|+++.|+..
T Consensus       252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG-~A~~~~~~~~~d~A~~~  328 (484)
T COG4783         252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYG-RALQTYLAGQYDEALKL  328 (484)
T ss_pred             HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHH-HHHHHHHhcccchHHHH
Confidence            34455555555442      2333445555544433333333333333222  111122233 33355667888999999


Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 043068          181 FHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPN-LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCR  258 (526)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  258 (526)
                      ++.++..-  |.|...+......+.+.++.++|.+.++++ ...|+ ....-.+..+|.+.|+..+|+.+++...... +
T Consensus       329 l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p  405 (484)
T COG4783         329 LQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-P  405 (484)
T ss_pred             HHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-C
Confidence            99888775  778888888888888889999998888887 44555 5566778888888888888888888887764 3


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068          259 PNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA  325 (526)
Q Consensus       259 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  325 (526)
                      -|+..|..|..+|...|+..++..-..+                  .|...|++++|...+....+.
T Consensus       406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         406 EDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             CCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence            3788888888888888888877655443                  456678888888888777665

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.42  E-value=0.00028  Score=66.94  Aligned_cols=142  Identities=14%  Similarity=0.157  Sum_probs=114.6

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068          129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG  208 (526)
Q Consensus       129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  208 (526)
                      ....+...|++++|+..+..+....+ .|++.+......+.+.++.++|.+.++.++...  |........+..++.+.|
T Consensus       312 ~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g  388 (484)
T COG4783         312 RALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGG  388 (484)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcC
Confidence            33445578899999999999876653 567777788889999999999999999998875  555778888899999999


Q ss_pred             ChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068          209 MIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAK  286 (526)
Q Consensus       209 ~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  286 (526)
                      +..+|+++++..  ..+.|...|..|..+|...|+..++.....+                  .|...|++++|...+..
T Consensus       389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~  450 (484)
T COG4783         389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMR  450 (484)
T ss_pred             ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHH
Confidence            999999999887  4566788999999999999998887766544                  45567888888888888


Q ss_pred             HHHcC
Q 043068          287 MRLNG  291 (526)
Q Consensus       287 ~~~~~  291 (526)
                      ..+..
T Consensus       451 A~~~~  455 (484)
T COG4783         451 ASQQV  455 (484)
T ss_pred             HHHhc
Confidence            76653

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.42  E-value=0.0034  Score=64.08  Aligned_cols=419  Identities=16%  Similarity=0.132  Sum_probs=237.9

Q ss_pred             cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHH--HHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCH
Q 043068           65 QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITD--VLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNV  139 (526)
Q Consensus        65 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~  139 (526)
                      .++++.|++-....++..|+..        |.....  .+.+.|+.++|..+++.-.   ..|..+...+-.+|.+.|+.
T Consensus        22 ~~qfkkal~~~~kllkk~Pn~~--------~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~   93 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHPNAL--------YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL   93 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCCCcH--------HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh
Confidence            5678999999999988766432        344333  3467899999999888532   33667889999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC-hh-------
Q 043068          140 KAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGM-IE-------  211 (526)
Q Consensus       140 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~-------  211 (526)
                      ++|..+|++.....  |+......+..+|.+.+.+.+-.+.--++-+.  .|.+.+.+=++++.+...-. .+       
T Consensus        94 d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~  169 (932)
T KOG2053|consen   94 DEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPIL  169 (932)
T ss_pred             hHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchh
Confidence            99999999998776  66888888899999999887665555555554  35566665566666555321 11       


Q ss_pred             --hHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043068          212 --NAKKVFDVMTVKP----NLLAYNTMINGFCKKGELEEAKKCMN-EMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLM  284 (526)
Q Consensus       212 --~A~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~  284 (526)
                        -|.+.++.+-..+    +..-.......+...|++++|.+++. ...+.-..-+...-+.-+..+...++|.+..++-
T Consensus       170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~  249 (932)
T KOG2053|consen  170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS  249 (932)
T ss_pred             HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence              2344444441111    22223333445566788999999984 4444433444555566778888899999999999


Q ss_pred             HHHHHcCCCCCHHhHHHHHHHHHH----------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcC
Q 043068          285 AKMRLNGFKDNVSTHKSMLKGLCV----------------VGKFDQAVGYLRNVMEANMNPDVKSYEVVING---FCKIG  345 (526)
Q Consensus       285 ~~~~~~~~~~~~~~~~~li~~~~~----------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g  345 (526)
                      .++...| ..|   |...++.+++                .+..+...+...+....... +  .|-+-+.+   +-..|
T Consensus       250 ~~Ll~k~-~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~R-g--p~LA~lel~kr~~~~g  322 (932)
T KOG2053|consen  250 SRLLEKG-NDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSR-G--PYLARLELDKRYKLIG  322 (932)
T ss_pred             HHHHHhC-Ccc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccccc-C--cHHHHHHHHHHhcccC
Confidence            9888877 333   3333332221                12223333333333222111 1  12222222   22345


Q ss_pred             ChhHHHHHHHHHH-HC---------------------------CCCCCHH-------HHHHHHHHHHHcCC-----HHHH
Q 043068          346 KSDEAISLLKEMR-AR---------------------------GLKPTVF-------SFNAVFRILVENGE-----LDRA  385 (526)
Q Consensus       346 ~~~~A~~~~~~m~-~~---------------------------~~~p~~~-------~~~~li~~~~~~g~-----~~~a  385 (526)
                      +.+++...|-+-. ..                           +..++..       -+...+..-...|.     -+.-
T Consensus       323 d~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i  402 (932)
T KOG2053|consen  323 DSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSI  402 (932)
T ss_pred             ChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHH
Confidence            5555443332211 00                           0011110       01111111122232     2222


Q ss_pred             HHHHHHcc---cC------CCCcCHH---------HHHHHHHHHHhcCCCHH---HHHHHHHHHHHCCCCCCHHHHHHHH
Q 043068          386 ILLLKQMP---QM------DCLPNFV---------SYNTIICGLCMAKGRMQ---DVEDLVDRMIRSGHNLDFTMYSCLL  444 (526)
Q Consensus       386 ~~~~~~~~---~~------~~~p~~~---------~~~~ll~~~~~~~g~~~---~a~~~~~~~~~~~~~p~~~~~~~l~  444 (526)
                      ..++++..   ++      ++-|+..         +.+.+++.+ +..++..   +|+-+++........ |..+--.|+
T Consensus       403 ~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~-rktnd~~~l~eaI~LLE~glt~s~h-nf~~KLlLi  480 (932)
T KOG2053|consen  403 LAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLW-RKTNDLTDLFEAITLLENGLTKSPH-NFQTKLLLI  480 (932)
T ss_pred             HHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHhhcCCc-cHHHHHHHH
Confidence            33332221   11      2333433         234555554 4445544   455556665554333 667777889


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHH
Q 043068          445 KGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISRFVFVHQVVVIMERT  512 (526)
Q Consensus       445 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  512 (526)
                      +.|+-.|-+..|.++++.|--+++......++.        .-....++.|.......++.+.++...
T Consensus       481 riY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~--------~~~~~t~g~~~~~s~~~~~~lkfy~~~  540 (932)
T KOG2053|consen  481 RIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI--------FRRAETSGRSSFASNTFNEHLKFYDSS  540 (932)
T ss_pred             HHHHHhcCChhHHHHHHhcchHHhhhccchHHH--------HHHHHhcccchhHHHHHHHHHHHHhhh
Confidence            999999999999999999877777544443332        223334556666555555555544443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.36  E-value=0.0035  Score=63.99  Aligned_cols=222  Identities=13%  Similarity=0.131  Sum_probs=143.7

Q ss_pred             HcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChh
Q 043068          134 GDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGV--LVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIE  211 (526)
Q Consensus       134 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  211 (526)
                      ...+++.+|++-..++.+..  |+. .|..++.+  +.+.|+.++|..+++.....+  +.|..|...+-.+|...|+.+
T Consensus        20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d   94 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLD   94 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhh
Confidence            46788999999888887765  332 23344444  457889999998888877665  458888999999999999999


Q ss_pred             hHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHH
Q 043068          212 NAKKVFDVM-TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGR----------VDEA  280 (526)
Q Consensus       212 ~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a  280 (526)
                      +|..++++. +..|+......+..+|.+.+.+.+-.+.--+|.+. .+-+...|=++++.+.+.-.          ..-|
T Consensus        95 ~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA  173 (932)
T KOG2053|consen   95 EAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA  173 (932)
T ss_pred             HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence            999999988 55677767777778888887776655554444443 22244444445555443211          2335


Q ss_pred             HHHHHHHHHcC-CCCCHHhHHHHHHHHHHcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068          281 KMLMAKMRLNG-FKDNVSTHKSMLKGLCVVGKFDQAVGYL-RNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMR  358 (526)
Q Consensus       281 ~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  358 (526)
                      .+.++.+.+.+ --.+..-.......+...|++++|.+++ ....+.-..-+...-+.-+..+...+++.+..++-.++.
T Consensus       174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll  253 (932)
T KOG2053|consen  174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL  253 (932)
T ss_pred             HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            55555555443 1122222223334455677888888887 334443333344445566777788888888888888888


Q ss_pred             HCC
Q 043068          359 ARG  361 (526)
Q Consensus       359 ~~~  361 (526)
                      ..|
T Consensus       254 ~k~  256 (932)
T KOG2053|consen  254 EKG  256 (932)
T ss_pred             HhC
Confidence            775

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=0.0009  Score=58.08  Aligned_cols=187  Identities=18%  Similarity=0.209  Sum_probs=92.8

Q ss_pred             CCHHHHHHHHHHHHHc---C-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHH
Q 043068          240 GELEEAKKCMNEMMNR---G-CRPNELT-YNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQ  314 (526)
Q Consensus       240 g~~~~A~~~~~~m~~~---g-~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  314 (526)
                      .+.++..+++.+++..   | ..++..+ |..++-+....|+.+.|...+..+...- +-+..+-..-.-.+-..|.+++
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~  104 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE  104 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence            3445555555554332   2 3333322 3344445555566666666666655442 2222222222223334566666


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068          315 AVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQ  394 (526)
Q Consensus       315 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  394 (526)
                      |.++|+.+++.++. |..++-.-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus       105 A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  105 AIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             HHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            66666666665532 4555554455555555555666666555544 344566666666666666666666666666554


Q ss_pred             CCCCcCHHHH-HHHHHHHHhcC--CCHHHHHHHHHHHHHC
Q 043068          395 MDCLPNFVSY-NTIICGLCMAK--GRMQDVEDLVDRMIRS  431 (526)
Q Consensus       395 ~~~~p~~~~~-~~ll~~~~~~~--g~~~~a~~~~~~~~~~  431 (526)
                        +.|-...| ..+...++...  .+++-+.+++.+.++.
T Consensus       183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence              22433322 22222222221  2445566666666654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.29  E-value=3.4e-05  Score=62.96  Aligned_cols=95  Identities=14%  Similarity=0.116  Sum_probs=49.2

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 043068          159 YSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMINGF  236 (526)
Q Consensus       159 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~~~  236 (526)
                      .....+...+...|++++|.+.|+.+...+  |.+...+..+...+.+.|++++|..+++.. .. +.+...+..+...+
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~   95 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL   95 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            334444445555555555555555555544  445555555555555555555555555544 11 22344444555555


Q ss_pred             HhcCCHHHHHHHHHHHHHc
Q 043068          237 CKKGELEEAKKCMNEMMNR  255 (526)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~  255 (526)
                      ...|++++|.+.|++..+.
T Consensus        96 ~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        96 LALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            5555555555555555544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.29  E-value=5.6e-05  Score=72.25  Aligned_cols=118  Identities=19%  Similarity=0.131  Sum_probs=54.3

Q ss_pred             HHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 043068          100 DVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEE  179 (526)
Q Consensus       100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  179 (526)
                      ..+...++++.|..++++....++.....+++.+...++-.+|++++++.....+ .+......-...+.+.++++.|++
T Consensus       177 ~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~~~~lAL~  255 (395)
T PF09295_consen  177 KYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKKKYELALE  255 (395)
T ss_pred             HHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHH
Confidence            3333344455555555544443343444444444444444455555544443321 233334444444444455555555


Q ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068          180 FFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM  220 (526)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  220 (526)
                      +.+++.+..  |.+..+|..|+.+|.+.|+++.|+..++.+
T Consensus       256 iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  256 IAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            555554443  344445555555555555555555444444

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.29  E-value=5.9e-05  Score=61.54  Aligned_cols=92  Identities=17%  Similarity=0.224  Sum_probs=40.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043068          266 AMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIG  345 (526)
Q Consensus       266 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  345 (526)
                      .+...+.+.|++++|...++.+...+ +.+...+..+...+.+.|++++|..+++...+.+.. +...+..+...|...|
T Consensus        22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g   99 (135)
T TIGR02552        22 ALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLALG   99 (135)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcC
Confidence            33344444444444444444444332 333444444444444444444444444444443221 3333444444444444


Q ss_pred             ChhHHHHHHHHHHH
Q 043068          346 KSDEAISLLKEMRA  359 (526)
Q Consensus       346 ~~~~A~~~~~~m~~  359 (526)
                      ++++|+..|+...+
T Consensus       100 ~~~~A~~~~~~al~  113 (135)
T TIGR02552       100 EPESALKALDLAIE  113 (135)
T ss_pred             CHHHHHHHHHHHHH
Confidence            44444444444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=0.00079  Score=58.43  Aligned_cols=186  Identities=13%  Similarity=0.134  Sum_probs=114.7

Q ss_pred             CCHHHHHHHHHHHHhc---C-CCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChh
Q 043068          137 GNVKAAIFWFHQAKQI---E-NGACLY-SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIE  211 (526)
Q Consensus       137 g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  211 (526)
                      .+.++.++++.++...   + ..++.. .|..++-+....|+.+.|...++++..+-  |.+...-..-.-.+-..|+++
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence            4566666666655431   2 223432 35555666667777777777777776653  445444444444455567777


Q ss_pred             hHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068          212 NAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRL  289 (526)
Q Consensus       212 ~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  289 (526)
                      +|+++++.+  ..+-|.+++---+...-..|+-.+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus       104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            777777776  33345556665555555666666777777777665 455777777777777777777777777777765


Q ss_pred             cCCCCCHHhHHHHHHHHHHcC---CHHHHHHHHHHHHHcC
Q 043068          290 NGFKDNVSTHKSMLKGLCVVG---KFDQAVGYLRNVMEAN  326 (526)
Q Consensus       290 ~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~  326 (526)
                      .. |.+...+..+.+.+.-.|   +.+-+.++|.+.++..
T Consensus       183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            43 445555555555554443   3445666666666653

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.15  E-value=0.0002  Score=59.07  Aligned_cols=88  Identities=17%  Similarity=0.264  Sum_probs=37.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 043068          302 MLKGLCVVGKFDQAVGYLRNVMEANMNPDV--KSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVEN  379 (526)
Q Consensus       302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~  379 (526)
                      +...+...|++++|...|+.+......+..  .....+...+...|++++|+..++.....  ......+......|.+.
T Consensus        54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~  131 (145)
T PF09976_consen   54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQ  131 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHC
Confidence            334444455555555555555444322211  12223344444455555555555432221  11222333344445555


Q ss_pred             CCHHHHHHHHHH
Q 043068          380 GELDRAILLLKQ  391 (526)
Q Consensus       380 g~~~~a~~~~~~  391 (526)
                      |+.++|...|+.
T Consensus       132 g~~~~A~~~y~~  143 (145)
T PF09976_consen  132 GDYDEARAAYQK  143 (145)
T ss_pred             CCHHHHHHHHHH
Confidence            555555554443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.13  E-value=0.00013  Score=69.67  Aligned_cols=124  Identities=12%  Similarity=0.160  Sum_probs=79.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH
Q 043068          229 YNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV  308 (526)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  308 (526)
                      ...|+..+...++++.|+++|+++.+..  |+  ....+++.+...++-.+|.+++.+..+.. +.+......-...+.+
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence            3345555556677777777777777662  33  33345666666667777777777766543 4455555556666667


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068          309 VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMR  358 (526)
Q Consensus       309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  358 (526)
                      .++++.|+++.+++.+..+. +..+|..|..+|.+.|+++.|+..++.+-
T Consensus       247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            77777777777777665332 44567777777777777777776666553

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.07  E-value=7.9e-06  Score=48.63  Aligned_cols=33  Identities=48%  Similarity=0.979  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN  260 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  260 (526)
                      +|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            577788888888888888888888877777776

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.06  E-value=0.00043  Score=57.12  Aligned_cols=123  Identities=12%  Similarity=0.095  Sum_probs=68.5

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC--HHHHHHH
Q 043068          126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGAC---LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD--VSTYTTM  200 (526)
Q Consensus       126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l  200 (526)
                      |..++..+ ..++...+...++.+....+ .+   ....-.+...+...|++++|...|+.+.... ..++  ......|
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~L   91 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHH
Confidence            44444444 36666666666666665442 12   1223334455666677777777777776654 1111  1234445


Q ss_pred             HHHHHHcCChhhHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043068          201 IRGYCKMGMIENAKKVFDVMT-VKPNLLAYNTMINGFCKKGELEEAKKCMNE  251 (526)
Q Consensus       201 i~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  251 (526)
                      ...+...|++++|+..++... .......+....+.+.+.|+.++|...|++
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            666666777777777766542 122333455566666667777777666654

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.01  E-value=1e-05  Score=48.15  Aligned_cols=33  Identities=45%  Similarity=0.994  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 043068          333 SYEVVINGFCKIGKSDEAISLLKEMRARGLKPT  365 (526)
Q Consensus       333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  365 (526)
                      +|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            455666666666666666666666665555554

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.00  E-value=1.1e-05  Score=47.71  Aligned_cols=33  Identities=27%  Similarity=0.600  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043068          227 LAYNTMINGFCKKGELEEAKKCMNEMMNRGCRP  259 (526)
Q Consensus       227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  259 (526)
                      .+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            356666666666666666666666666666655

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.92  E-value=0.00023  Score=68.41  Aligned_cols=119  Identities=13%  Similarity=0.130  Sum_probs=64.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 043068          225 NLLAYNTMINGFCKKGELEEAKKCMNEMMNR--GCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSM  302 (526)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  302 (526)
                      +......+++.+....+++.+..++.+....  ....-..|.+++++.|.+.|..++++.++..=...|+-||..+++.+
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L  144 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL  144 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence            4445555555555555555666655555543  11112233345666666666666666666555555666666666666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043068          303 LKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCK  343 (526)
Q Consensus       303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~  343 (526)
                      ++.+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus       145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~  185 (429)
T PF10037_consen  145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK  185 (429)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence            66666666666666666555555444444444444444433

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.91  E-value=0.00024  Score=57.65  Aligned_cols=101  Identities=14%  Similarity=0.034  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043068          368 SFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGY  447 (526)
Q Consensus       368 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  447 (526)
                      ..-.+...+...|++++|.++|+-+..  +.|....|..=+.+.++..|++++|...|......++. |+..+-.+..++
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~  113 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence            344556667889999999999999888  45888877777777788889999999999999998865 889999999999


Q ss_pred             HhCCCHHHHHHHHHHHHHcCCCcc
Q 043068          448 CEEGNVENVMQIAHEMVTKKGRLL  471 (526)
Q Consensus       448 ~~~g~~~~a~~~~~~m~~~~~~~~  471 (526)
                      ...|+.+.|++.|+..+......|
T Consensus       114 L~lG~~~~A~~aF~~Ai~~~~~~~  137 (157)
T PRK15363        114 LACDNVCYAIKALKAVVRICGEVS  137 (157)
T ss_pred             HHcCCHHHHHHHHHHHHHHhccCh
Confidence            999999999999999988875444

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.90  E-value=2.3e-05  Score=46.20  Aligned_cols=32  Identities=34%  Similarity=0.762  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 043068          333 SYEVVINGFCKIGKSDEAISLLKEMRARGLKP  364 (526)
Q Consensus       333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  364 (526)
                      +|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            45555555555555555555555555555544

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.90  E-value=0.00022  Score=68.51  Aligned_cols=122  Identities=15%  Similarity=0.159  Sum_probs=86.2

Q ss_pred             CCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 043068          291 GFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN--MNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFS  368 (526)
Q Consensus       291 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~  368 (526)
                      +.+.+......+++.+....+.+.+..++-+.....  ...-..|..++++.|.+.|..++++.+++.=...|+-||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            445666677777777777777777777777776641  212233445788888888888888888887777788888888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHH
Q 043068          369 FNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLC  412 (526)
Q Consensus       369 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~  412 (526)
                      +|.||+.+.+.|++..|.++...|...+...+..|+..-+.+++
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~  184 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY  184 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence            88888888888888888888877776655556666655555543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.85  E-value=0.00022  Score=53.54  Aligned_cols=88  Identities=18%  Similarity=0.327  Sum_probs=39.0

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068          129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG  208 (526)
Q Consensus       129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  208 (526)
                      +...+...|++++|..+++++.+..+ .+...+..+...+...+++++|.+.|+...+..  +.+..++..+...+...|
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHHHH
Confidence            33344444555555555544443332 122334444444444455555555555444433  333334444444444444


Q ss_pred             ChhhHHHHHHh
Q 043068          209 MIENAKKVFDV  219 (526)
Q Consensus       209 ~~~~A~~~~~~  219 (526)
                      ++++|...+..
T Consensus        83 ~~~~a~~~~~~   93 (100)
T cd00189          83 KYEEALEAYEK   93 (100)
T ss_pred             hHHHHHHHHHH
Confidence            44444444433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.81  E-value=0.00053  Score=51.32  Aligned_cols=91  Identities=18%  Similarity=0.187  Sum_probs=39.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcC
Q 043068          231 TMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVG  310 (526)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  310 (526)
                      .+...+...|++++|.+.+++..+.... +...+..+...+...+++++|.+.++...+.. +.+..++..+...+...|
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence            3344444445555555555544443211 22334444444444444555554444444332 222234444444444444


Q ss_pred             CHHHHHHHHHHHH
Q 043068          311 KFDQAVGYLRNVM  323 (526)
Q Consensus       311 ~~~~A~~~~~~~~  323 (526)
                      +.++|...+....
T Consensus        83 ~~~~a~~~~~~~~   95 (100)
T cd00189          83 KYEEALEAYEKAL   95 (100)
T ss_pred             hHHHHHHHHHHHH
Confidence            4444444444433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.79  E-value=0.00065  Score=53.77  Aligned_cols=27  Identities=19%  Similarity=0.295  Sum_probs=11.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043068          229 YNTMINGFCKKGELEEAKKCMNEMMNR  255 (526)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~~m~~~  255 (526)
                      +..+..++.+.|+.++|.+.++++.+.
T Consensus        79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        79 LLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            333334444444444444444444443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.77  E-value=0.0037  Score=58.13  Aligned_cols=76  Identities=18%  Similarity=0.214  Sum_probs=36.4

Q ss_pred             HHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHH
Q 043068          201 IRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKK-GELEEAKKCMNEMMNR----GCRPN--ELTYNAMIYGLCI  273 (526)
Q Consensus       201 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~  273 (526)
                      +..|...|++..|-+.+..            +...|-.. |++++|++.|++..+.    | .+.  ...+..+...+.+
T Consensus       101 ~~~y~~~G~~~~aA~~~~~------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~  167 (282)
T PF14938_consen  101 IEIYREAGRFSQAAKCLKE------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR  167 (282)
T ss_dssp             HHHHHHCT-HHHHHHHHHH------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence            3445555555555444433            33444444 6677777766665432    1 100  1223445555666


Q ss_pred             cCCHHHHHHHHHHHHH
Q 043068          274 NGRVDEAKMLMAKMRL  289 (526)
Q Consensus       274 ~g~~~~a~~~~~~~~~  289 (526)
                      .|++++|.++|++...
T Consensus       168 l~~y~~A~~~~e~~~~  183 (282)
T PF14938_consen  168 LGRYEEAIEIYEEVAK  183 (282)
T ss_dssp             TT-HHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHH
Confidence            6666666666666544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.76  E-value=0.0013  Score=53.52  Aligned_cols=98  Identities=9%  Similarity=-0.068  Sum_probs=52.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043068          225 NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLK  304 (526)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  304 (526)
                      +......+...+...|++++|.++|+-+...... +..-|..|.-++-..|++++|+..|....... +.++..+-.+..
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~  111 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence            3344444555555556666666666555554322 33444455555555566666666666555544 345555555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHH
Q 043068          305 GLCVVGKFDQAVGYLRNVME  324 (526)
Q Consensus       305 ~~~~~g~~~~A~~~~~~~~~  324 (526)
                      ++...|+.+.|.+.|+..+.
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVR  131 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            55666666666555555444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.76  E-value=0.00076  Score=53.38  Aligned_cols=101  Identities=10%  Similarity=0.058  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC--CHHHHH
Q 043068          368 SFNAVFRILVENGELDRAILLLKQMPQMDCLPN----FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNL--DFTMYS  441 (526)
Q Consensus       368 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~  441 (526)
                      ++..+...+.+.|++++|.+.|+.+.+..  |+    ...+..+...+... |++++|...++.+....+..  ....+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQ-GKYADAAKAFLAVVKKYPKSPKAPDALL   80 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence            44556666777777777777777776532  22    22333444455444 77888888888777643221  245677


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068          442 CLLKGYCEEGNVENVMQIAHEMVTKKGRLL  471 (526)
Q Consensus       442 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~  471 (526)
                      .+..++.+.|+.++|.+.++++++..+..+
T Consensus        81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        81 KLGMSLQELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence            777777888888888888888888776543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.75  E-value=0.052  Score=54.20  Aligned_cols=132  Identities=11%  Similarity=0.132  Sum_probs=67.7

Q ss_pred             HHHHHhCCCHHHHHHHHHhcCCCC-H----HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 043068           99 TDVLLSHSLISIAASLLKNSNKLS-D----FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNS  173 (526)
Q Consensus        99 ~~~~~~~~~~~~a~~~~~~~~~~~-~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  173 (526)
                      +.+..+-|++-.+.++++.++..+ +    ..|+.+...++....+++|.+.|..-..         -...+.++.+..+
T Consensus       767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~  837 (1189)
T KOG2041|consen  767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLEL  837 (1189)
T ss_pred             HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHh
Confidence            344445555555555555544221 1    2455566666666666666666554211         1123444555555


Q ss_pred             hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043068          174 IKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNE  251 (526)
Q Consensus       174 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  251 (526)
                      +++-+.+...+      |.+....-.+..++...|.-++|.+.|-+-+.+ .     ..+..|...+++.+|.++-+.
T Consensus       838 f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p-k-----aAv~tCv~LnQW~~avelaq~  903 (1189)
T KOG2041|consen  838 FGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP-K-----AAVHTCVELNQWGEAVELAQR  903 (1189)
T ss_pred             hhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhccCc-H-----HHHHHHHHHHHHHHHHHHHHh
Confidence            54444433332      444555566666667777777766666555422 1     234445555666666655443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=0.0092  Score=55.70  Aligned_cols=256  Identities=15%  Similarity=0.085  Sum_probs=141.1

Q ss_pred             HHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHcCC
Q 043068           61 VIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDF---FISKLIKAYGDRG  137 (526)
Q Consensus        61 ~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g  137 (526)
                      .+..+.++..|+..+..++...|+...+      |..-+..+.--++++++..-.+.....++.   ...-.-+++...+
T Consensus        58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~y------y~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~  131 (486)
T KOG0550|consen   58 AFYKQKTYGNALKNYTFAIDMCPDNASY------YSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS  131 (486)
T ss_pred             hHHHHhhHHHHHHHHHHHHHhCccchhh------hchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence            3444667889999999999887765333      445555555667777777666544332211   1122222333333


Q ss_pred             CHHHHHHHHH---------------HHHhcCC-CCChhhHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 043068          138 NVKAAIFWFH---------------QAKQIEN-GACLYSYNSL-LGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTM  200 (526)
Q Consensus       138 ~~~~A~~~~~---------------~~~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  200 (526)
                      +..+|.+.++               ....... +|.-..|..+ ..++.-.|+.++|.++-..+++..  +.+......-
T Consensus       132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~n~~al~vr  209 (486)
T KOG0550|consen  132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--ATNAEALYVR  209 (486)
T ss_pred             HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cchhHHHHhc
Confidence            3333332222               1111111 1222333322 234556788888888888887765  3344333333


Q ss_pred             HHHHHHcCChhhHHHHHHhC-CCCCCHHH-------------HHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHH
Q 043068          201 IRGYCKMGMIENAKKVFDVM-TVKPNLLA-------------YNTMINGFCKKGELEEAKKCMNEMMNR---GCRPNELT  263 (526)
Q Consensus       201 i~~~~~~g~~~~A~~~~~~~-~~~p~~~~-------------~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~  263 (526)
                      ..++.-.++.+.|...|++. ...|+...             +..-.+-..+.|++..|.+.|.+.+..   +..|+...
T Consensus       210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl  289 (486)
T KOG0550|consen  210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL  289 (486)
T ss_pred             ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence            33444567888888888876 44454322             222233455677777777777777654   23344555


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068          264 YNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA  325 (526)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  325 (526)
                      |.....+..+.|+.++|+.-.++..+.. +.-...+..-..++...+++++|.+-+++..+.
T Consensus       290 Y~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  290 YGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6666666677777777777777665432 111222333344445566677777777666654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.74  E-value=6.7e-05  Score=55.27  Aligned_cols=79  Identities=19%  Similarity=0.263  Sum_probs=35.6

Q ss_pred             CCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHH
Q 043068          137 GNVKAAIFWFHQAKQIENG-ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKK  215 (526)
Q Consensus       137 g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  215 (526)
                      |+++.|+.+|+++....+. ++...+..+..++.+.|++++|.+++++ .+.+  +.+......+..++.+.|++++|++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            4555555555555544421 1222333345555555555555555555 2222  2223333344555555555555555


Q ss_pred             HHH
Q 043068          216 VFD  218 (526)
Q Consensus       216 ~~~  218 (526)
                      +++
T Consensus        80 ~l~   82 (84)
T PF12895_consen   80 ALE   82 (84)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            554

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.72  E-value=3.9e-05  Score=44.07  Aligned_cols=29  Identities=48%  Similarity=1.006  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRG  256 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g  256 (526)
                      +|++++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            46666666666666666666666666554

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.71  E-value=0.00079  Score=64.65  Aligned_cols=99  Identities=10%  Similarity=0.029  Sum_probs=57.6

Q ss_pred             HHHHHcCCHHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 043068          374 RILVENGELDRAILLLKQMPQMDCLPN-FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGN  452 (526)
Q Consensus       374 ~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  452 (526)
                      ..+...|++++|++.|+++++..  |+ ...|..+..++.. .|++++|...++++++.... +...|..+..+|.+.|+
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIK-LGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence            34445566666666666666532  33 3333333333333 36677777777766665433 55566666666777777


Q ss_pred             HHHHHHHHHHHHHcCCCccchhhh
Q 043068          453 VENVMQIAHEMVTKKGRLLKLKNF  476 (526)
Q Consensus       453 ~~~a~~~~~~m~~~~~~~~~~~~~  476 (526)
                      +++|+..|++.++.++..+....+
T Consensus        86 ~~eA~~~~~~al~l~P~~~~~~~~  109 (356)
T PLN03088         86 YQTAKAALEKGASLAPGDSRFTKL  109 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHH
Confidence            777777777777666655554444

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.71  E-value=0.0068  Score=56.35  Aligned_cols=89  Identities=17%  Similarity=0.259  Sum_probs=40.5

Q ss_pred             HHHHc-CCHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----CCHH-HHHH
Q 043068          305 GLCVV-GKFDQAVGYLRNVMEA----NMNP--DVKSYEVVINGFCKIGKSDEAISLLKEMRARGLK-----PTVF-SFNA  371 (526)
Q Consensus       305 ~~~~~-g~~~~A~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~  371 (526)
                      .|-.. |++++|.+.|++..+.    + .+  -..++..+...+.+.|++++|+++|+++......     .+.. .|-.
T Consensus       123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~  201 (282)
T PF14938_consen  123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK  201 (282)
T ss_dssp             HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence            34444 5566666666554432    1 10  1223445555666666666666666666543211     1111 1222


Q ss_pred             HHHHHHHcCCHHHHHHHHHHccc
Q 043068          372 VFRILVENGELDRAILLLKQMPQ  394 (526)
Q Consensus       372 li~~~~~~g~~~~a~~~~~~~~~  394 (526)
                      .+-++...|+...|.+.+++...
T Consensus       202 a~l~~L~~~D~v~A~~~~~~~~~  224 (282)
T PF14938_consen  202 AILCHLAMGDYVAARKALERYCS  224 (282)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHGT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Confidence            23344455666666666666553

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.71  E-value=0.0011  Score=61.37  Aligned_cols=129  Identities=13%  Similarity=0.124  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCI-NGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGL  306 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  306 (526)
                      +|..++...-+.+..+.|.++|.+.++.+ ..+...|......-.. .++.+.|.++|+...+. ++.+...|...++.+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            45555555555555666666666655332 1123333333333222 34444466666655543 244555555555555


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068          307 CVVGKFDQAVGYLRNVMEANMNPD---VKSYEVVINGFCKIGKSDEAISLLKEMRA  359 (526)
Q Consensus       307 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~  359 (526)
                      .+.++.+.|..+|++.... +.++   ...|...+..=.+.|+.+.+.++.+++.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5556666666666555543 1111   12555555555555555555555555554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.67  E-value=0.0013  Score=60.97  Aligned_cols=128  Identities=18%  Similarity=0.195  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVR-VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRG  203 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~  203 (526)
                      +|..+++...+.+..+.|..+|.++.+.+. .+..+|-.....-.+ .++.+.|.++|+..++.-  +.+...|...+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence            566677777777778888888888764331 234444444444333 456666888888887763  6677778888888


Q ss_pred             HHHcCChhhHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043068          204 YCKMGMIENAKKVFDVM-TVKPN----LLAYNTMINGFCKKGELEEAKKCMNEMMNR  255 (526)
Q Consensus       204 ~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  255 (526)
                      +.+.|+.+.|..+|++. ..-+.    ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            88888888888888776 22222    246777777777777777777777777664

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.67  E-value=0.00094  Score=64.12  Aligned_cols=87  Identities=13%  Similarity=0.078  Sum_probs=54.0

Q ss_pred             HHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh
Q 043068          131 KAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMI  210 (526)
Q Consensus       131 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  210 (526)
                      ..+...|++++|++.|+++...++ .+...|..+..+|.+.|++++|+..++++++..  |.+...|..+..+|...|++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCH
Confidence            344456666666666666665553 345556666666666666666666666666654  55566666666666666666


Q ss_pred             hhHHHHHHhC
Q 043068          211 ENAKKVFDVM  220 (526)
Q Consensus       211 ~~A~~~~~~~  220 (526)
                      ++|...|++.
T Consensus        87 ~eA~~~~~~a   96 (356)
T PLN03088         87 QTAKAALEKG   96 (356)
T ss_pred             HHHHHHHHHH
Confidence            6666666654

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.66  E-value=0.0009  Score=50.45  Aligned_cols=77  Identities=12%  Similarity=0.232  Sum_probs=43.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHcccCCC-CcCHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043068          373 FRILVENGELDRAILLLKQMPQMDC-LPNFVSYNTIICGLCMAK-------GRMQDVEDLVDRMIRSGHNLDFTMYSCLL  444 (526)
Q Consensus       373 i~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~-------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~  444 (526)
                      |..+...|++.....+|+.++..|+ .|+..+|+.++.+.+++.       +++-+.+.+++.|+..+++|+..+|+.++
T Consensus        32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl  111 (120)
T PF08579_consen   32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL  111 (120)
T ss_pred             HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence            3334444555556666666655555 556666666665555432       12344555666666666666666666666


Q ss_pred             HHHHh
Q 043068          445 KGYCE  449 (526)
Q Consensus       445 ~~~~~  449 (526)
                      ..+.+
T Consensus       112 ~~Llk  116 (120)
T PF08579_consen  112 GSLLK  116 (120)
T ss_pred             HHHHH
Confidence            65543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.65  E-value=0.00014  Score=53.48  Aligned_cols=81  Identities=16%  Similarity=0.284  Sum_probs=50.7

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 043068          171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNL-LAYNTMINGFCKKGELEEAKKCM  249 (526)
Q Consensus       171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~  249 (526)
                      .|+++.|+.+++++.+.....++...+..+..+|.+.|++++|.++++..+..++. .....+..++.+.|++++|+++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            46777888888887776511113445555777777888888888777664333322 34445567777777777777777


Q ss_pred             HH
Q 043068          250 NE  251 (526)
Q Consensus       250 ~~  251 (526)
                      ++
T Consensus        82 ~~   83 (84)
T PF12895_consen   82 EK   83 (84)
T ss_dssp             HH
T ss_pred             hc
Confidence            65

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.65  E-value=5.7e-05  Score=43.37  Aligned_cols=29  Identities=31%  Similarity=0.751  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 043068          439 MYSCLLKGYCEEGNVENVMQIAHEMVTKK  467 (526)
Q Consensus       439 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  467 (526)
                      +|+.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            57777777777777777777777777765

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.64  E-value=0.0012  Score=49.72  Aligned_cols=38  Identities=11%  Similarity=0.211  Sum_probs=17.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHH
Q 043068          305 GLCVVGKFDQAVGYLRNVMEANM-NPDVKSYEVVINGFC  342 (526)
Q Consensus       305 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~  342 (526)
                      .+...+++.....+|+.+++.|+ .|+..+|+.++.+.+
T Consensus        34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~   72 (120)
T PF08579_consen   34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIA   72 (120)
T ss_pred             HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence            33333444444444444444444 444444444444433

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=0.045  Score=51.32  Aligned_cols=163  Identities=14%  Similarity=0.089  Sum_probs=95.8

Q ss_pred             CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHH---
Q 043068          224 PNLLAYNTM-INGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIY--GLCINGRVDEAKMLMAKMRLNGFKDNVS---  297 (526)
Q Consensus       224 p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~---  297 (526)
                      |...+|..+ ..++...|++++|.+.--..++..-.   ..+...++  ++.-.++.+.|...|.+.+..+  |+-.   
T Consensus       166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~---n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk  240 (486)
T KOG0550|consen  166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT---NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK  240 (486)
T ss_pred             chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc---hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence            333444333 24555667777777776666554211   12222222  2334566677777777766443  2221   


Q ss_pred             ----------hHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 043068          298 ----------THKSMLKGLCVVGKFDQAVGYLRNVMEA---NMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKP  364 (526)
Q Consensus       298 ----------~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  364 (526)
                                .+..-.+-..+.|.+..|.+.|.+.+..   +.+++...|........+.|+.++|+.--++..+.    
T Consensus       241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----  316 (486)
T KOG0550|consen  241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----  316 (486)
T ss_pred             hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----
Confidence                      1112233456778888888888887764   34556667777777778888888888877777654    


Q ss_pred             CHHHHHH---HHHHHHHcCCHHHHHHHHHHcccC
Q 043068          365 TVFSFNA---VFRILVENGELDRAILLLKQMPQM  395 (526)
Q Consensus       365 ~~~~~~~---li~~~~~~g~~~~a~~~~~~~~~~  395 (526)
                      |....-.   -..++...++|++|.+-+++..+.
T Consensus       317 D~syikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  317 DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3332222   234455667788888888776653

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.62  E-value=0.00027  Score=48.98  Aligned_cols=60  Identities=7%  Similarity=0.114  Sum_probs=48.6

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068          410 GLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLL  471 (526)
Q Consensus       410 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~  471 (526)
                      .+... |++++|.+.|+++++..+. +...+..+..++.+.|++++|...|+++++..+..|
T Consensus         6 ~~~~~-g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    6 ALYQQ-GDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHC-THHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHc-CCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            34454 9999999999999987644 778899999999999999999999999998887543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.60  E-value=0.0043  Score=52.89  Aligned_cols=86  Identities=17%  Similarity=0.049  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN--ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKG  305 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  305 (526)
                      .+..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...+++..+.. +.+...+..+...
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~  115 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            344455555555555555555555554322211  2344555555555555555555555555432 2233444444555


Q ss_pred             HHHcCCHHH
Q 043068          306 LCVVGKFDQ  314 (526)
Q Consensus       306 ~~~~g~~~~  314 (526)
                      +...|+...
T Consensus       116 ~~~~g~~~~  124 (172)
T PRK02603        116 YHKRGEKAE  124 (172)
T ss_pred             HHHcCChHh
Confidence            555544333

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.60  E-value=0.1  Score=52.32  Aligned_cols=328  Identities=16%  Similarity=0.107  Sum_probs=184.5

Q ss_pred             CHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHH----------HHHhcCChhH
Q 043068          107 LISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLG----------VLVRVNSIKL  176 (526)
Q Consensus       107 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~----------~~~~~g~~~~  176 (526)
                      .+++|.+.++..  |.+..|..|...-...-.++.|...|-+....   +-+.....|-.          .-+--|++++
T Consensus       678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~fee  752 (1189)
T KOG2041|consen  678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEE  752 (1189)
T ss_pred             chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence            355566655543  55677877777777777788888877665432   11211111111          1122488999


Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043068          177 AEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPN----LLAYNTMINGFCKKGELEEAKKCMNEM  252 (526)
Q Consensus       177 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m  252 (526)
                      |+++|-++-+++          ..+..+.+.|++-.+.++++.-+-..|    ...|+.+...+.....+++|.+.|..-
T Consensus       753 aek~yld~drrD----------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  753 AEKLYLDADRRD----------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             hhhhhhccchhh----------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999988775432          246677888999988888876532222    347888888888888888888888654


Q ss_pred             HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 043068          253 MNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVK  332 (526)
Q Consensus       253 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  332 (526)
                      ..         -...+.++.+..++++-+.+.+.+     +.+....-.+.+++...|.-++|.+.|-+-   +. |   
T Consensus       823 ~~---------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p---  881 (1189)
T KOG2041|consen  823 GD---------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P---  881 (1189)
T ss_pred             cc---------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c---
Confidence            32         123456666666666655555443     555566677788888888888887765432   11 1   


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--------------HHHHHHHHcCCHHHHHHHHHHccc----
Q 043068          333 SYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFN--------------AVFRILVENGELDRAILLLKQMPQ----  394 (526)
Q Consensus       333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--------------~li~~~~~~g~~~~a~~~~~~~~~----  394 (526)
                        ...+.+|...++|.+|.++-++..-    |...|.-              --|..+-+.|+.-.|-+++.+|.+    
T Consensus       882 --kaAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~  955 (1189)
T KOG2041|consen  882 --KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQE  955 (1189)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhh
Confidence              2345567777777777776654431    2222211              112334455555555555555543    


Q ss_pred             CCCCcCHHHHHHHHHHHH--------------hcCCCHHHHHHHHHHHHHC-------CCCCCHHHHH--HHHHHHHhCC
Q 043068          395 MDCLPNFVSYNTIICGLC--------------MAKGRMQDVEDLVDRMIRS-------GHNLDFTMYS--CLLKGYCEEG  451 (526)
Q Consensus       395 ~~~~p~~~~~~~ll~~~~--------------~~~g~~~~a~~~~~~~~~~-------~~~p~~~~~~--~l~~~~~~~g  451 (526)
                      .+.++-..--..++.++.              ..+|..++|..+++.-.-.       +.--....|.  .|..--...|
T Consensus       956 K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg 1035 (1189)
T KOG2041|consen  956 KYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEG 1035 (1189)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence            233322221111122211              1135666666544432211       0111233343  3444455679


Q ss_pred             CHHHHHHHHHHHHHcCCCccchhhh
Q 043068          452 NVENVMQIAHEMVTKKGRLLKLKNF  476 (526)
Q Consensus       452 ~~~~a~~~~~~m~~~~~~~~~~~~~  476 (526)
                      .++.|++.--.+.+..-..|+..-+
T Consensus      1036 ~v~~Al~Tal~L~DYEd~lpP~eiy 1060 (1189)
T KOG2041|consen 1036 RVKDALQTALILSDYEDFLPPAEIY 1060 (1189)
T ss_pred             hHHHHHHHHhhhccHhhcCCHHHHH
Confidence            9999988876666655545555444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.56  E-value=0.0057  Score=52.15  Aligned_cols=92  Identities=16%  Similarity=0.070  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043068          261 ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN--VSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVI  338 (526)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li  338 (526)
                      ...+..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...+++..+.... +...+..+.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg  113 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA  113 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence            44567777788888999999999998876532222  457788888888999999999999888886433 566677777


Q ss_pred             HHHHhcCChhHHHHH
Q 043068          339 NGFCKIGKSDEAISL  353 (526)
Q Consensus       339 ~~~~~~g~~~~A~~~  353 (526)
                      ..+...|+...+..-
T Consensus       114 ~~~~~~g~~~~a~~~  128 (172)
T PRK02603        114 VIYHKRGEKAEEAGD  128 (172)
T ss_pred             HHHHHcCChHhHhhC
Confidence            777777775554433

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.56  E-value=0.0045  Score=62.25  Aligned_cols=132  Identities=13%  Similarity=0.039  Sum_probs=87.0

Q ss_pred             CCChhhHHHHHHHHHhcC-----ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc--------CChhhHHHHHHhC-
Q 043068          155 GACLYSYNSLLGVLVRVN-----SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKM--------GMIENAKKVFDVM-  220 (526)
Q Consensus       155 ~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~-  220 (526)
                      ..+...|...+++.....     ..+.|..+|++.++..  |.....|..+..++...        +++..+.+..++. 
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            355666666666644322     2567777777777765  55556666554444332        1234455544442 


Q ss_pred             ---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068          221 ---TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLN  290 (526)
Q Consensus       221 ---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  290 (526)
                         ....+...|..+.-.....|++++|...+++..+.+  |+...|..+...+...|+.++|.+.+++....
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence               123345667777666667788888888888888774  57778888888888888888888888887765

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.55  E-value=0.00023  Score=49.89  Aligned_cols=59  Identities=8%  Similarity=0.258  Sum_probs=50.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchh
Q 043068          415 KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLK  474 (526)
Q Consensus       415 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  474 (526)
                      .|++++|.++++++.+..+. +..++..++.+|.+.|++++|.++++++....++.+...
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~   62 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ   62 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            38999999999999987655 888888999999999999999999999999998655443

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.55  E-value=0.0018  Score=54.98  Aligned_cols=79  Identities=14%  Similarity=0.047  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGA--CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIR  202 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~  202 (526)
                      .+..+...+...|++++|+..|++.......+  ...++..+..++...|++++|++.+++.....  +....++..+..
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~la~  114 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHH
Confidence            45667777778888888888888887654322  23577788888888888888888888888764  555666666666


Q ss_pred             HHH
Q 043068          203 GYC  205 (526)
Q Consensus       203 ~~~  205 (526)
                      .+.
T Consensus       115 i~~  117 (168)
T CHL00033        115 ICH  117 (168)
T ss_pred             HHH
Confidence            666

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.52  E-value=0.0088  Score=52.35  Aligned_cols=131  Identities=10%  Similarity=0.012  Sum_probs=81.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-----hHHHHH
Q 043068          229 YNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVS-----THKSML  303 (526)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~li  303 (526)
                      -+.++.++...|.+.-...++++.++...+-++.....|++.-.+.|+.+.|...|+...+..-..+..     +.....
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            355666677777888888888888877666677777778888888888888888888765442222222     222333


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068          304 KGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR  360 (526)
Q Consensus       304 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  360 (526)
                      ..|.-.+++..|...+.++...+.. |...-|.-.-+..-.|+..+|++.++.|.+.
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3444455666666666666655433 4444444333444456666666666666655

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.52  E-value=0.058  Score=48.69  Aligned_cols=59  Identities=19%  Similarity=0.125  Sum_probs=33.3

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcCCCCChhh---HHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 043068          129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYS---YNSLLGVLVRVNSIKLAEEFFHQIVKEN  188 (526)
Q Consensus       129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~  188 (526)
                      ....+...|++++|++.|+++....+.. ...   .-.++.++.+.+++++|...|++.++..
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            3444455666666666666666554322 111   1234455666666666666666666654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.52  E-value=0.0011  Score=59.21  Aligned_cols=97  Identities=12%  Similarity=0.182  Sum_probs=68.7

Q ss_pred             HHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChh
Q 043068          132 AYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIE  211 (526)
Q Consensus       132 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  211 (526)
                      -..+.++|++|+..|.+++...+ .|.+-|..-..+|.+.|.++.|++-.+..+..+  |.-..+|..|..+|...|+++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHH
Confidence            35567777777777777777664 456666666777777777777777777777665  555667777777777777777


Q ss_pred             hHHHHHHhC-CCCCCHHHHHH
Q 043068          212 NAKKVFDVM-TVKPNLLAYNT  231 (526)
Q Consensus       212 ~A~~~~~~~-~~~p~~~~~~~  231 (526)
                      +|++.|++. .+.|+-.+|-.
T Consensus       167 ~A~~aykKaLeldP~Ne~~K~  187 (304)
T KOG0553|consen  167 EAIEAYKKALELDPDNESYKS  187 (304)
T ss_pred             HHHHHHHhhhccCCCcHHHHH
Confidence            777777765 66676665543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.51  E-value=0.038  Score=49.84  Aligned_cols=175  Identities=10%  Similarity=0.088  Sum_probs=92.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHHhH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 043068          269 YGLCINGRVDEAKMLMAKMRLNGFKDNVSTH---KSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCK--  343 (526)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--  343 (526)
                      ..+.+.|++++|.+.|+.+...- +-+....   -.++.++.+.+++++|...+++..+..+......|...+.+.+.  
T Consensus        40 ~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~  118 (243)
T PRK10866         40 QQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA  118 (243)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence            34445666666666666665532 2222222   23455666666666666666666665433222233333333221  


Q ss_pred             c---------------CC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHH
Q 043068          344 I---------------GK---SDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYN  405 (526)
Q Consensus       344 ~---------------g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  405 (526)
                      .               .+   ..+|++.|+++++.  -|+.             .-..+|...+..+.+.     ..-..
T Consensus       119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~-----la~~e  178 (243)
T PRK10866        119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR-----LAKYE  178 (243)
T ss_pred             cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH-----HHHHH
Confidence            0               11   23455566666554  3443             2234444433333221     00111


Q ss_pred             -HHHHHHHhcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043068          406 -TIICGLCMAKGRMQDVEDLVDRMIRS--GHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVT  465 (526)
Q Consensus       406 -~ll~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  465 (526)
                       .+..-|.+ .|.+..|..-++.+++.  +.+........++.+|.+.|..++|.+....+..
T Consensus       179 ~~ia~~Y~~-~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~  240 (243)
T PRK10866        179 LSVAEYYTK-RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA  240 (243)
T ss_pred             HHHHHHHHH-cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence             22223444 48888888888888875  2233455677788899999999999888765543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.50  E-value=0.0006  Score=47.76  Aligned_cols=49  Identities=16%  Similarity=0.337  Sum_probs=27.4

Q ss_pred             hcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068          170 RVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM  220 (526)
Q Consensus       170 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  220 (526)
                      +.|++++|+++|+++.+..  |.+...+..++.+|.+.|++++|.++++++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~   51 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERL   51 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred             hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4455555555555555554  445555555555555555555555555555

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.47  E-value=0.0017  Score=60.20  Aligned_cols=131  Identities=13%  Similarity=0.096  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCC-CCHHhHHHHHHHHHHcCCHHHHHHHHHHHHH----cC-CCCCHH
Q 043068          263 TYNAMIYGLCINGRVDEAKMLMAKMR----LNGFK-DNVSTHKSMLKGLCVVGKFDQAVGYLRNVME----AN-MNPDVK  332 (526)
Q Consensus       263 ~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~  332 (526)
                      .|..|.+.|.-.|+++.|+...+.-.    +-|-. ..-..+..+..++.-.|+++.|.+.|+.-..    .| -.....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            35555555555666666666554321    11211 1123455566666666777777666655332    11 111233


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q 043068          333 SYEVVINGFCKIGKSDEAISLLKEMRAR----G-LKPTVFSFNAVFRILVENGELDRAILLLKQMP  393 (526)
Q Consensus       333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~  393 (526)
                      +..+|.++|.-..++++|+.++.+-...    + ..-....+.+|..+|...|..++|+.+.+...
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            4555666666666666776666543221    1 01123455666666666777776666655443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.44  E-value=0.01  Score=59.70  Aligned_cols=62  Identities=15%  Similarity=0.113  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068          331 VKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQ  394 (526)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  394 (526)
                      ...|..+.......|++++|...+++..+.  .|+...|..+...+...|+.++|.+.+++...
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344444444444455555555555555554  24455555555555555555555555555554

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.42  E-value=0.0022  Score=59.52  Aligned_cols=133  Identities=14%  Similarity=0.117  Sum_probs=79.4

Q ss_pred             HhHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCC-CCH
Q 043068          297 STHKSMLKGLCVVGKFDQAVGYLRNVME----ANMN-PDVKSYEVVINGFCKIGKSDEAISLLKEMRA----RGLK-PTV  366 (526)
Q Consensus       297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~-p~~  366 (526)
                      ..|..+...|.-.|+++.|+...+.-++    .|-. .....+..+.+++.-.|+++.|.+.|+....    .|-+ ...
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            3566677777778889888876654332    2211 1234677788888888888888888876532    2211 122


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHccc----C-CCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043068          367 FSFNAVFRILVENGELDRAILLLKQMPQ----M-DCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIR  430 (526)
Q Consensus       367 ~~~~~li~~~~~~g~~~~a~~~~~~~~~----~-~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~  430 (526)
                      ...-+|...|.-..++++|+.++.+-..    . ...-....+.+|-.++... |..++|+.+.+.-++
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al-g~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL-GEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-hhHHHHHHHHHHHHH
Confidence            3344566666666777888877765432    0 1112345566666665443 777777766655443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.41  E-value=0.0036  Score=53.49  Aligned_cols=100  Identities=22%  Similarity=0.287  Sum_probs=51.5

Q ss_pred             CCCHHhHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 043068          293 KDNVSTHKSMLKGLCV-----VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVF  367 (526)
Q Consensus       293 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~  367 (526)
                      ..+..+|..+++.|.+     .|..+=....++.|.+.|+.-|..+|+.|++.+=+ |.+-               |...
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~  107 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF  107 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH
Confidence            3445555555555543     35555556666667777777777777777766543 2111               1110


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHH
Q 043068          368 SFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGL  411 (526)
Q Consensus       368 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~  411 (526)
                       +-++..-|  -.+-+-|++++++|...|+-||..++..++..+
T Consensus       108 -fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iF  148 (228)
T PF06239_consen  108 -FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIF  148 (228)
T ss_pred             -HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Confidence             00000001  123344566666666666666666666666555

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.41  E-value=0.13  Score=49.06  Aligned_cols=120  Identities=14%  Similarity=0.121  Sum_probs=73.3

Q ss_pred             hcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHH---cCCHHHHHHHHHHcccCCCCcCH----HHHHHHHHH
Q 043068          343 KIGK-SDEAISLLKEMRARGLKPTVFSFNAVF----RILVE---NGELDRAILLLKQMPQMDCLPNF----VSYNTIICG  410 (526)
Q Consensus       343 ~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li----~~~~~---~g~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~  410 (526)
                      +.|. -++|+.+++.+.+-. .-|..+-|.+.    ..|.+   ...+.+-+.+-+-+.+.|+.|-.    ..-|.+.++
T Consensus       391 ~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA  469 (549)
T PF07079_consen  391 EIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA  469 (549)
T ss_pred             hcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence            3444 778888888877641 11332222222    22221   23344444444444456665533    334444433


Q ss_pred             -HHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043068          411 -LCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVT  465 (526)
Q Consensus       411 -~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  465 (526)
                       |.-.+|++.++.-.-.-+.+  +.|++.+|..++-+.....++++|..++..+.-
T Consensus       470 EyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~  523 (549)
T PF07079_consen  470 EYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP  523 (549)
T ss_pred             HHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence             22235999998877666665  788999999999999999999999999986643

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.40  E-value=0.0066  Score=51.52  Aligned_cols=62  Identities=18%  Similarity=0.035  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRP--NELTYNAMIYGLCINGRVDEAKMLMAKMRL  289 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  289 (526)
                      .|..+...+...|++++|+..|++.......+  ...++..+...+...|++++|+..++....
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33444444444555555555555554332111  112444444555555555555555555443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.38  E-value=0.056  Score=44.95  Aligned_cols=126  Identities=17%  Similarity=0.130  Sum_probs=58.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHH
Q 043068          258 RPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN-PDVKSYEV  336 (526)
Q Consensus       258 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~  336 (526)
                      .|+...-..|..+....|+..+|...|++...--+..|......+.++....+++..|...++++.+.++. .+..+...
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            34444444455555555555555555555544333444444455555555555555555555555543211 01112333


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043068          337 VINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRA  385 (526)
Q Consensus       337 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  385 (526)
                      +...|...|.+.+|+..|+.....  .|+...-......+.+.|+.+++
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea  212 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREA  212 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHH
Confidence            444555555555555555555443  33333222233334444444443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.38  E-value=0.0016  Score=58.13  Aligned_cols=83  Identities=16%  Similarity=0.110  Sum_probs=46.8

Q ss_pred             cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHcCCCHHH
Q 043068           65 QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDF---FISKLIKAYGDRGNVKA  141 (526)
Q Consensus        65 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~  141 (526)
                      .+++++|+..+..++...|....|      |..-+.+|.+-|.++.|++-.+.....|+.   .|..|..+|...|++++
T Consensus        94 ~~~Y~eAv~kY~~AI~l~P~nAVy------ycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   94 NKDYQEAVDKYTEAIELDPTNAVY------YCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcchH------HHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence            445666666666666655543322      555556666666666666666555544433   45555556666666666


Q ss_pred             HHHHHHHHHhcC
Q 043068          142 AIFWFHQAKQIE  153 (526)
Q Consensus       142 A~~~~~~~~~~~  153 (526)
                      |++.|.+.+..+
T Consensus       168 A~~aykKaLeld  179 (304)
T KOG0553|consen  168 AIEAYKKALELD  179 (304)
T ss_pred             HHHHHHhhhccC
Confidence            666665555444

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.36  E-value=0.0052  Score=52.55  Aligned_cols=105  Identities=13%  Similarity=0.197  Sum_probs=59.2

Q ss_pred             CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 043068          223 KPNLLAYNTMINGFCK-----KGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVS  297 (526)
Q Consensus       223 ~p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  297 (526)
                      ..+..+|..+++.|.+     .|.++-....++.|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+-         
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F---------  112 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF---------  112 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence            4566666666666654     36677777777777777777777777777776643 2221 111111111         


Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043068          298 THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGK  346 (526)
Q Consensus       298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  346 (526)
                            .  -.-.+.+-|++++++|...|+-||..++..+++.|++.+.
T Consensus       113 ------~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  113 ------M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             ------c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                  0  0012344455666666666666666666666666655554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.34  E-value=0.14  Score=47.89  Aligned_cols=283  Identities=14%  Similarity=0.134  Sum_probs=151.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhH
Q 043068          136 RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVL--VRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENA  213 (526)
Q Consensus       136 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  213 (526)
                      .|+-..|.++-.+..+. +..|....-.++.+-  .-.|+++.|.+-|+.|...-  ..-..-...|.-..-+.|+.+.|
T Consensus        97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP--EtRllGLRgLyleAqr~GareaA  173 (531)
T COG3898          97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP--ETRLLGLRGLYLEAQRLGAREAA  173 (531)
T ss_pred             cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh--HHHHHhHHHHHHHHHhcccHHHH
Confidence            56666776666554321 123333444444332  33578888888888886431  11111122233333456777777


Q ss_pred             HHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHH--HHHHHHHHH---HcCCHHHHHHHHH
Q 043068          214 KKVFDVM-TVKPN-LLAYNTMINGFCKKGELEEAKKCMNEMMNRG-CRPNELT--YNAMIYGLC---INGRVDEAKMLMA  285 (526)
Q Consensus       214 ~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~--~~~li~~~~---~~g~~~~a~~~~~  285 (526)
                      .++-+.. +..|. ...+...+...|..|+++.|+++++.-++.. +.++..-  -..|+.+-.   -..+...|...-.
T Consensus       174 r~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~  253 (531)
T COG3898         174 RHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL  253 (531)
T ss_pred             HHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            7777665 33333 4467777788888888888888887665432 3333321  122222211   1234445555544


Q ss_pred             HHHHcCCCCCHH-hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCC
Q 043068          286 KMRLNGFKDNVS-THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR-GLK  363 (526)
Q Consensus       286 ~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~  363 (526)
                      +..+.  .||.. .-..-..++.+.|+..++-.+++.+-+..+.|+..  .  +-.+.+.|+  .+..-+++.... .++
T Consensus       254 ~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~--lY~~ar~gd--ta~dRlkRa~~L~slk  325 (531)
T COG3898         254 EANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--L--LYVRARSGD--TALDRLKRAKKLESLK  325 (531)
T ss_pred             HHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--H--HHHHhcCCC--cHHHHHHHHHHHHhcC
Confidence            44432  34432 23334566777788888888888777775554432  1  112334443  333333333211 123


Q ss_pred             CC-HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 043068          364 PT-VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS  431 (526)
Q Consensus       364 p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~  431 (526)
                      || ...--.+..+-...|++..|..--+....  ..|....|..|.+.-....|+-.++..++.+.++.
T Consensus       326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            33 34445556666677777777666665555  34666666666554333347777777777777765

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.32  E-value=0.0013  Score=46.19  Aligned_cols=66  Identities=12%  Similarity=0.136  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC
Q 043068          401 FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEG-NVENVMQIAHEMVTKKG  468 (526)
Q Consensus       401 ~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~  468 (526)
                      ...|..+-..+... |++++|+..|++.++..+. +...|..+..+|.+.| ++++|++.+++.++.+|
T Consensus         3 a~~~~~~g~~~~~~-~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQ-GDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHT-THHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            45566666666665 8999999999999887544 6778888888999998 78999999988887654

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.30  E-value=0.023  Score=44.55  Aligned_cols=56  Identities=21%  Similarity=0.104  Sum_probs=27.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068          234 NGFCKKGELEEAKKCMNEMMNRGCRPN--ELTYNAMIYGLCINGRVDEAKMLMAKMRL  289 (526)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~  289 (526)
                      .++-..|+.++|+.+|++....|....  ...+-.+...+...|++++|..++++...
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334445555555555555555544432  22333444455555555555555555543

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.30  E-value=0.16  Score=47.73  Aligned_cols=109  Identities=14%  Similarity=0.181  Sum_probs=64.3

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043068          298 THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILV  377 (526)
Q Consensus       298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~  377 (526)
                      +.+..+.-+...|+...|.++-.+..    .|+-..|-..+.+++..++|++-.++-..      +-++..|..++.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence            34445556666777766665544431    35667777777777777777766655332      113466777777777


Q ss_pred             HcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 043068          378 ENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDR  427 (526)
Q Consensus       378 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~  427 (526)
                      +.|+..+|..+...+.          +..-+..|.+. |++.+|.+..-+
T Consensus       249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~-~~~~~A~~~A~~  287 (319)
T PF04840_consen  249 KYGNKKEASKYIPKIP----------DEERVEMYLKC-GDYKEAAQEAFK  287 (319)
T ss_pred             HCCCHHHHHHHHHhCC----------hHHHHHHHHHC-CCHHHHHHHHHH
Confidence            7777777777766621          12233344443 677766655443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.28  E-value=0.01  Score=46.57  Aligned_cols=89  Identities=15%  Similarity=0.098  Sum_probs=49.4

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---CHHHHHHHHHH
Q 043068          129 LIKAYGDRGNVKAAIFWFHQAKQIENGAC--LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPP---DVSTYTTMIRG  203 (526)
Q Consensus       129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~li~~  203 (526)
                      +..++-..|+.++|+.+|++....|....  ...+-.+...+...|++++|..++++.....  |.   +......+..+
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~   84 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA   84 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence            44455566677777777776666554322  2344455566666677777777766666543  22   22223333345


Q ss_pred             HHHcCChhhHHHHHHh
Q 043068          204 YCKMGMIENAKKVFDV  219 (526)
Q Consensus       204 ~~~~g~~~~A~~~~~~  219 (526)
                      +...|+.++|.+++-.
T Consensus        85 L~~~gr~~eAl~~~l~  100 (120)
T PF12688_consen   85 LYNLGRPKEALEWLLE  100 (120)
T ss_pred             HHHCCCHHHHHHHHHH
Confidence            5556666666655543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.26  E-value=0.0015  Score=45.28  Aligned_cols=59  Identities=19%  Similarity=0.210  Sum_probs=37.6

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 043068          129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKEN  188 (526)
Q Consensus       129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  188 (526)
                      +...+.+.|++++|+..|+++.+..+ .+...+..+..++...|++++|...|+++++..
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            34556666777777777777766553 345666666667777777777777777766553

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.23  E-value=0.02  Score=50.25  Aligned_cols=161  Identities=14%  Similarity=0.171  Sum_probs=103.7

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068          129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG  208 (526)
Q Consensus       129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  208 (526)
                      ++..+......+..++.|++-.       ..+.+.++..+.-.+.+.-...+++++++.. -+.+......|++.-.+.|
T Consensus       155 ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~G  226 (366)
T KOG2796|consen  155 ILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIG  226 (366)
T ss_pred             HHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcc
Confidence            3333333333455566665432       3456677777777888888888888888765 3567777888888888888


Q ss_pred             ChhhHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043068          209 MIENAKKVFDVM--------TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEA  280 (526)
Q Consensus       209 ~~~~A~~~~~~~--------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  280 (526)
                      |.+.|...|++.        +..-+..........|.-.+++-.|...|.+....... |...-|.-.-+..-.|+..+|
T Consensus       227 D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DA  305 (366)
T KOG2796|consen  227 DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDA  305 (366)
T ss_pred             cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHH
Confidence            888888888854        22223333334445566678888888888887776433 444444433344456888888


Q ss_pred             HHHHHHHHHcCCCCCHHhHH
Q 043068          281 KMLMAKMRLNGFKDNVSTHK  300 (526)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~  300 (526)
                      .+.++.|...  .|...+-+
T Consensus       306 iK~~e~~~~~--~P~~~l~e  323 (366)
T KOG2796|consen  306 LKQLEAMVQQ--DPRHYLHE  323 (366)
T ss_pred             HHHHHHHhcc--CCccchhh
Confidence            8888888765  34444433

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.16  E-value=0.36  Score=49.08  Aligned_cols=310  Identities=11%  Similarity=0.091  Sum_probs=151.8

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh--hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068          128 KLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSI--KLAEEFFHQIVKENVVPPDVSTYTTMIRGYC  205 (526)
Q Consensus       128 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~  205 (526)
                      .++.-+...+.+..|+++-..+...-... ..+|.....-+.+..+.  +++.+..++=+... . -....|..+.+-..
T Consensus       442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay  518 (829)
T KOG2280|consen  442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAY  518 (829)
T ss_pred             hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHH
Confidence            45666667777777777766654322111 45555555555555321  22222222222221 1 23345666666666


Q ss_pred             HcCChhhHHHHHHhCCC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCCHHHHHHH
Q 043068          206 KMGMIENAKKVFDVMTV-------KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRG-----------CRPNELTYNAM  267 (526)
Q Consensus       206 ~~g~~~~A~~~~~~~~~-------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~~~~~~l  267 (526)
                      ..|+.+-|..+++.=+.       --+..-+...+.-....|+.+-...++-.+...-           .+.....|.-+
T Consensus       519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~  598 (829)
T KOG2280|consen  519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF  598 (829)
T ss_pred             hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence            77777777777654210       0122234455556666677766666665554431           00011111111


Q ss_pred             HH--------HHHHcCCHHHHHHHHH-HH-HH-cCCCCCHHhHHHHHHHHHHcCCHH---HH-------HHHHHHHHH-c
Q 043068          268 IY--------GLCINGRVDEAKMLMA-KM-RL-NGFKDNVSTHKSMLKGLCVVGKFD---QA-------VGYLRNVME-A  325 (526)
Q Consensus       268 i~--------~~~~~g~~~~a~~~~~-~~-~~-~~~~~~~~~~~~li~~~~~~g~~~---~A-------~~~~~~~~~-~  325 (526)
                      ++        .+.+.++-.++..-|. +- .+ ..+.+-..........+.+.....   +|       +++.+.+.. .
T Consensus       599 ~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~  678 (829)
T KOG2280|consen  599 MRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQF  678 (829)
T ss_pred             HHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            11        0111111111111111 00 00 001111112223334444333211   11       111122211 1


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHH
Q 043068          326 NMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYN  405 (526)
Q Consensus       326 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  405 (526)
                      +.....-+.+--+.-+...|+..+|.++-.+.+    -||...|..-+.+++..+++++-+++-+....      +.-|.
T Consensus       679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~  748 (829)
T KOG2280|consen  679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYL  748 (829)
T ss_pred             ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCch
Confidence            222233344455556667788888887777665    46777777778888888888877776666552      23355


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 043068          406 TIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIA  460 (526)
Q Consensus       406 ~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  460 (526)
                      ..+..+.+ .|+.+||.+++.+..      +..   -...+|.+.|++.+|.++.
T Consensus       749 PFVe~c~~-~~n~~EA~KYiprv~------~l~---ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  749 PFVEACLK-QGNKDEAKKYIPRVG------GLQ---EKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             hHHHHHHh-cccHHHHhhhhhccC------ChH---HHHHHHHHhccHHHHHHHH
Confidence            55555444 488888888776542      111   4567778888888777764

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.16  E-value=0.0024  Score=45.34  Aligned_cols=62  Identities=6%  Similarity=0.045  Sum_probs=52.7

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccch
Q 043068          410 GLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKL  473 (526)
Q Consensus       410 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  473 (526)
                      .+... +++++|.+.++++++.++. ++..|.....++.+.|++++|.+.+++.++.+++.+..
T Consensus         4 ~~~~~-~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    4 IYLQQ-EDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHhC-CCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            34444 8999999999999998655 78889999999999999999999999999999866554

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.13  E-value=0.23  Score=46.40  Aligned_cols=304  Identities=14%  Similarity=0.137  Sum_probs=193.0

Q ss_pred             CChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHh--CCCHHHHHHHHHhcCC---CCHHHHHHHH--HHHHcCCC
Q 043068           66 TNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLS--HSLISIAASLLKNSNK---LSDFFISKLI--KAYGDRGN  138 (526)
Q Consensus        66 ~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~---~~~~~~~~li--~~~~~~g~  138 (526)
                      ..|..+-++|....+.           ..|.+|...++.  .|+-..|+++-++...   .|....-.|+  +.-.-.|+
T Consensus        67 ~sP~t~~Ryfr~rKRd-----------rgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~  135 (531)
T COG3898          67 ESPYTARRYFRERKRD-----------RGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGD  135 (531)
T ss_pred             hCcHHHHHHHHHHHhh-----------hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCc
Confidence            3455666666644321           125666666554  5778888888776542   2222222232  33445799


Q ss_pred             HHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHH
Q 043068          139 VKAAIFWFHQAKQIENGACL--YSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKV  216 (526)
Q Consensus       139 ~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  216 (526)
                      ++.|.+-|+.|...   |..  --...|.-..-+.|..+.|.+.-+..-...  |.-...+...+...|..|+++.|+++
T Consensus       136 ~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkL  210 (531)
T COG3898         136 YEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKL  210 (531)
T ss_pred             hHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHH
Confidence            99999999999742   221  122233333446799999999988887765  66678899999999999999999999


Q ss_pred             HHhC----CCCCCHHH--HHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 043068          217 FDVM----TVKPNLLA--YNTMINGFC---KKGELEEAKKCMNEMMNRGCRPNELT-YNAMIYGLCINGRVDEAKMLMAK  286 (526)
Q Consensus       217 ~~~~----~~~p~~~~--~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~  286 (526)
                      .+.-    -+.++..-  -..|+.+-.   -.-+...|...-.+..+.  .||..- -.....++.+.|+..++-.+++.
T Consensus       211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~  288 (531)
T COG3898         211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILET  288 (531)
T ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHH
Confidence            9875    24455432  122322211   123455666665555443  555332 23345678899999999999999


Q ss_pred             HHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 043068          287 MRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA-NMNP-DVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKP  364 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  364 (526)
                      +-+..  |.+.++.  +..+.+.|+.  +..-++...+. ..+| +..+...+..+-...|++..|..--+.....  .|
T Consensus       289 aWK~e--PHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~p  360 (531)
T COG3898         289 AWKAE--PHPDIAL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--AP  360 (531)
T ss_pred             HHhcC--CChHHHH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--Cc
Confidence            98764  4433332  2334455553  33223322221 1122 5566777788888899999888877777654  67


Q ss_pred             CHHHHHHHHHHHHH-cCCHHHHHHHHHHcccC
Q 043068          365 TVFSFNAVFRILVE-NGELDRAILLLKQMPQM  395 (526)
Q Consensus       365 ~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~  395 (526)
                      ....|..|.+.-.. .|+-.++...+.+..+.
T Consensus       361 res~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         361 RESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            88888777776554 49999999999888764

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.13  E-value=0.038  Score=49.92  Aligned_cols=108  Identities=10%  Similarity=0.020  Sum_probs=80.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCCCCHHHH
Q 043068          363 KPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAK--GRMQDVEDLVDRMIRSGHNLDFTMY  440 (526)
Q Consensus       363 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~--g~~~~a~~~~~~~~~~~~~p~~~~~  440 (526)
                      +-|...|-.|...|...|+.+.|..-|.+..+.. .++...+..+..++....  ....++..++++++..+.. |....
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence            3367788888888888999988888888887731 134444444444444332  3456788899999887655 77888


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcCCCccc
Q 043068          441 SCLLKGYCEEGNVENVMQIAHEMVTKKGRLLK  472 (526)
Q Consensus       441 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~  472 (526)
                      ..|...+...|++.+|...|+.|++..+...+
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            88888899999999999999999988875444

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.09  E-value=0.26  Score=46.32  Aligned_cols=108  Identities=18%  Similarity=0.228  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHH
Q 043068          333 SYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLC  412 (526)
Q Consensus       333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~  412 (526)
                      +.+.-|.-+...|+...|.++-.+..    .|+...|..-+.+++..++|++-.++-.. .     -++.-|...+..+.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHHH
Confidence            44555667778899998888877664    57899999999999999999998876543 2     23467888888865


Q ss_pred             hcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 043068          413 MAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAH  461 (526)
Q Consensus       413 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  461 (526)
                      . .|...+|..++.++     +     +..-+..|.+.|++.+|.+..-
T Consensus       249 ~-~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~  286 (319)
T PF04840_consen  249 K-YGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAF  286 (319)
T ss_pred             H-CCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence            5 49999999988872     2     2456778899999999987643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.044  Score=49.50  Aligned_cols=99  Identities=12%  Similarity=0.112  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043068          260 NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVG---KFDQAVGYLRNVMEANMNPDVKSYEV  336 (526)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~  336 (526)
                      |...|..|..+|...|+.+.|..-|.+..+.. +++...+..+..++....   ...++..+|+++...+.. |+.+...
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l  232 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL  232 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence            44555555555555555555555555554432 344444444444433321   133444555555544333 4444444


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHC
Q 043068          337 VINGFCKIGKSDEAISLLKEMRAR  360 (526)
Q Consensus       337 li~~~~~~g~~~~A~~~~~~m~~~  360 (526)
                      |...+...|++.+|...|+.|.+.
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhc
Confidence            444555555555555555555543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.08  E-value=0.042  Score=48.17  Aligned_cols=62  Identities=11%  Similarity=-0.015  Sum_probs=39.3

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 043068          127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGAC--LYSYNSLLGVLVRVNSIKLAEEFFHQIVKEN  188 (526)
Q Consensus       127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  188 (526)
                      -.....+...|++.+|++.|+.+....+...  ..+.-.++.++.+.|+++.|...+++.++..
T Consensus         9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y   72 (203)
T PF13525_consen    9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY   72 (203)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            3445556677888888888888776543211  3445566777778888888888888877764

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.08  E-value=0.0037  Score=43.79  Aligned_cols=13  Identities=31%  Similarity=0.590  Sum_probs=4.6

Q ss_pred             hcCCHHHHHHHHH
Q 043068          238 KKGELEEAKKCMN  250 (526)
Q Consensus       238 ~~g~~~~A~~~~~  250 (526)
                      ..|++++|+..|+
T Consensus        15 ~~~~~~~A~~~~~   27 (69)
T PF13414_consen   15 QQGDYEEAIEYFE   27 (69)
T ss_dssp             HTTHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHH
Confidence            3333333333333

...

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.96  E-value=0.38  Score=45.94  Aligned_cols=134  Identities=13%  Similarity=0.162  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHH-HHHH
Q 043068          332 KSYEVVINGFCKIGKSDEAISLLKEMRARG-LKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYN-TIIC  409 (526)
Q Consensus       332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~ll~  409 (526)
                      .+|...+++-.+..-++.|..+|-++.+.| +.+++..+++++.-++. |+...|..+|+.-...  .||...|- -.+.
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~  474 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL  474 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence            456677788788888999999999999888 56788888888887654 7788899999876553  25544432 2333


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc
Q 043068          410 GLCMAKGRMQDVEDLVDRMIRSGHNLD--FTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRL  470 (526)
Q Consensus       410 ~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~  470 (526)
                      -+.+ .++-+.|..+|+..++. +.-+  ..+|..++.--..-|+...+..+-++|.+.-+..
T Consensus       475 fLi~-inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe  535 (660)
T COG5107         475 FLIR-INDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE  535 (660)
T ss_pred             HHHH-hCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence            3333 48889999999976654 3323  5689999988899999999999999988887744

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.95  E-value=0.16  Score=44.57  Aligned_cols=42  Identities=12%  Similarity=0.112  Sum_probs=23.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhCCCHHHH
Q 043068          415 KGRMQDVEDLVDRMIRSGHNL--DFTMYSCLLKGYCEEGNVENV  456 (526)
Q Consensus       415 ~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a  456 (526)
                      .|.+..|..-++.+++.=+..  .......++.+|.+.|..+.+
T Consensus       154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            377777777777777642111  123455666677777776644

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.93  E-value=0.055  Score=44.59  Aligned_cols=68  Identities=18%  Similarity=0.438  Sum_probs=36.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHH
Q 043068          300 KSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA-----RGLKPTVFS  368 (526)
Q Consensus       300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~  368 (526)
                      ..++..+...|++++|..+.+.+....+. +...|..+|.+|...|+..+|.+.|+++.+     .|+.|+..+
T Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            34555556666666666666666665433 566666666666666666666666665532     355665543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.89  E-value=0.22  Score=47.30  Aligned_cols=168  Identities=14%  Similarity=0.092  Sum_probs=92.4

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC---CCChhhHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCCHH
Q 043068          122 SDFFISKLIKAYGDRGNVKAAIFWFHQAKQIEN---GACLYSYNSLLGVLVR---VNSIKLAEEFFHQIVKENVVPPDVS  195 (526)
Q Consensus       122 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~  195 (526)
                      ++.+.-.++-+|....+++..+++.+.+.....   ......--...-++-+   .|+.++|++++..++... ..++..
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-~~~~~d  218 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-ENPDPD  218 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-CCCChH
Confidence            334445566679999999999999998876421   1112222233445556   789999999999854443 367888


Q ss_pred             HHHHHHHHHHHc---------CChhhHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHH----HHHHHH---HH-HHHcC-
Q 043068          196 TYTTMIRGYCKM---------GMIENAKKVFDVM-TVKPNLLAYNTMINGFCKKGELE----EAKKCM---NE-MMNRG-  256 (526)
Q Consensus       196 ~~~~li~~~~~~---------g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~-m~~~g-  256 (526)
                      +|..+.+.|-..         ...++|+..|.+. .+.||..+--.++..+...|.-.    +..++-   .. ..++| 
T Consensus       219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~  298 (374)
T PF13281_consen  219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS  298 (374)
T ss_pred             HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence            888888776441         2355666666664 44455443333333333333211    111111   11 11122 


Q ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068          257 --CRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLN  290 (526)
Q Consensus       257 --~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  290 (526)
                        -..+-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus       299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence              1223344455555555566666666666665543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.88  E-value=0.022  Score=51.82  Aligned_cols=94  Identities=17%  Similarity=0.159  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC----CHHHHHH
Q 043068          160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD---VSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP----NLLAYNT  231 (526)
Q Consensus       160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~  231 (526)
                      .|...+..+.+.|++++|...|+.+++..  |.+   ..++..+..+|...|++++|...|+.+ ...|    ....+..
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            34444444445566666666666666553  222   234555555666666666666666555 1111    1223333


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc
Q 043068          232 MINGFCKKGELEEAKKCMNEMMNR  255 (526)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~  255 (526)
                      +...+...|+.++|.++|+++++.
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Confidence            444555556666666666655554

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.86  E-value=0.21  Score=41.63  Aligned_cols=99  Identities=14%  Similarity=0.154  Sum_probs=43.9

Q ss_pred             CCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHH
Q 043068          294 DNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARG---LKPTVFSFN  370 (526)
Q Consensus       294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~  370 (526)
                      |++.....+..+..+.|+..+|...|++....-..-|......+.++....+++..|...++++-+.+   -.||  +.-
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L  164 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL  164 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence            44444444445555555555555555544443333344444444444444455555555554444331   1111  222


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccc
Q 043068          371 AVFRILVENGELDRAILLLKQMPQ  394 (526)
Q Consensus       371 ~li~~~~~~g~~~~a~~~~~~~~~  394 (526)
                      .+.+.+...|...+|..-|+....
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~  188 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAIS  188 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHH
Confidence            333444444444444444444444

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.85  E-value=0.25  Score=49.14  Aligned_cols=101  Identities=13%  Similarity=0.216  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHH
Q 043068          330 DVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIIC  409 (526)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~  409 (526)
                      +..+...+...+.+...+.-|-++|..|-..         ..+++.....++|++|..+-++..+  +.||+..-  ...
T Consensus       746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~p--yaq  812 (1081)
T KOG1538|consen  746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMP--YAQ  812 (1081)
T ss_pred             hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccch--HHH
Confidence            3445555555566667778888888877532         4567788888999999998888877  44554321  111


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043068          410 GLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTK  466 (526)
Q Consensus       410 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  466 (526)
                      -++.. .+++||.+                      +|.++|+-.+|.++++++...
T Consensus       813 wLAE~-DrFeEAqk----------------------AfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  813 WLAEN-DRFEEAQK----------------------AFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             Hhhhh-hhHHHHHH----------------------HHHHhcchHHHHHHHHHhhhh
Confidence            22222 45555543                      345556667777777666543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.84  E-value=0.029  Score=46.29  Aligned_cols=55  Identities=18%  Similarity=0.323  Sum_probs=26.6

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHh
Q 043068          163 SLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDV  219 (526)
Q Consensus       163 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  219 (526)
                      .++..+...|++++|.++...++...  |-|...|..+|.+|...|+..+|.++|++
T Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~  121 (146)
T PF03704_consen   67 RLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYER  121 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            33444444555555555555555544  44555555555555555555555555444

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.83  E-value=0.036  Score=50.50  Aligned_cols=98  Identities=13%  Similarity=0.036  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHhHHHHH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN--ELTYNAMIYGLCINGRVDEAKMLMAKMRLNG--FKDNVSTHKSML  303 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li  303 (526)
                      .|...+..+.+.|++++|+..|+.+++.-....  ...+-.+...|...|++++|...|+.+.+.-  -+.....+-.++
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            344444444555667777777766666522110  2345556666666666666666666665432  011223333345


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHc
Q 043068          304 KGLCVVGKFDQAVGYLRNVMEA  325 (526)
Q Consensus       304 ~~~~~~g~~~~A~~~~~~~~~~  325 (526)
                      ..+...|+.++|..+|+++++.
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Confidence            5555666666666666666654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.77  E-value=0.35  Score=46.98  Aligned_cols=231  Identities=14%  Similarity=0.131  Sum_probs=115.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068          232 MINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGK  311 (526)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  311 (526)
                      +|.-.-+..+...-++.-++.++.  .||..+.-.++ +--......++++++++..+.|-            ...+...
T Consensus       174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE------------~~lg~s~  238 (539)
T PF04184_consen  174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE------------ASLGKSQ  238 (539)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH------------Hhhchhh
Confidence            333344555555555555555554  44433222222 22234557788888887765431            0001000


Q ss_pred             HHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043068          312 FDQA-VGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLK-PTVFSFNAVFRILVENGELDRAILLL  389 (526)
Q Consensus       312 ~~~A-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~  389 (526)
                      ..+. -..++........+-..+-..+..+.-+.|+.++|++.+++|.+.... -.......|+.++...+.+.++..++
T Consensus       239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL  318 (539)
T PF04184_consen  239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL  318 (539)
T ss_pred             hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence            0000 011112222222222333345666667788888888888888754211 12345667888888888888888888


Q ss_pred             HHcccCCCCcC--HHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHCCCCCCHHHHH----HH---HH
Q 043068          390 KQMPQMDCLPN--FVSYNTIICGLCMAKGR---------------MQDVEDLVDRMIRSGHNLDFTMYS----CL---LK  445 (526)
Q Consensus       390 ~~~~~~~~~p~--~~~~~~ll~~~~~~~g~---------------~~~a~~~~~~~~~~~~~p~~~~~~----~l---~~  445 (526)
                      .+..+... |.  ...|+..+-. .+.-++               -..|.+.+.++++.++  .+.-|-    .|   -.
T Consensus       319 ~kYdDi~l-pkSAti~YTaALLk-aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP--HVp~YLLe~K~LilPPe  394 (539)
T PF04184_consen  319 AKYDDISL-PKSATICYTAALLK-ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP--HVPKYLLEMKSLILPPE  394 (539)
T ss_pred             HHhccccC-CchHHHHHHHHHHH-HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC--CCchhhhccCCCCCChH
Confidence            88765322 33  3345544322 121111               1234566777666432  211111    01   11


Q ss_pred             HHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHH
Q 043068          446 GYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVD  482 (526)
Q Consensus       446 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~  482 (526)
                      .+.+.|| .||+...---++.-.+.+++.+++.|..+
T Consensus       395 hilkrGD-SEAiaYAf~hL~hWk~veGAL~lL~~twe  430 (539)
T PF04184_consen  395 HILKRGD-SEAIAYAFFHLQHWKRVEGALNLLHCTWE  430 (539)
T ss_pred             HhcCCCc-HHHHHHHHHHHHHHhcCHhHHHHHHHHhc
Confidence            3456665 66666655555555556777777654433

The molecular function of this protein is uncertain.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.76  E-value=0.063  Score=46.70  Aligned_cols=87  Identities=15%  Similarity=0.193  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHH
Q 043068          197 YTTMIRGYCKMGMIENAKKVFDVMT-------VKPNL-LAYNTMINGFCKKGELEEAKKCMNEMMNRG---CRPNELTYN  265 (526)
Q Consensus       197 ~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~  265 (526)
                      +....+++.+...+++|-..|.+-+       --++. ..|-..|-.+.-..++..|.+.+++--+.+   -.-+..+..
T Consensus       153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le  232 (308)
T KOG1585|consen  153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE  232 (308)
T ss_pred             HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence            4444555666666666655554431       11111 234444555555667777777777644432   112455666


Q ss_pred             HHHHHHHHcCCHHHHHHHH
Q 043068          266 AMIYGLCINGRVDEAKMLM  284 (526)
Q Consensus       266 ~li~~~~~~g~~~~a~~~~  284 (526)
                      .|+.+| ..|+.+++.+++
T Consensus       233 nLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  233 NLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHh-ccCCHHHHHHHH
Confidence            666665 446666655443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.69  E-value=0.014  Score=41.28  Aligned_cols=57  Identities=11%  Similarity=0.071  Sum_probs=41.9

Q ss_pred             HHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 043068          131 KAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKEN  188 (526)
Q Consensus       131 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  188 (526)
                      ..|.+.+++++|+++++.+...++ .+...+.....++.+.|++++|.+.|+...+.+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            456677778888888877777664 356667777777777788888888887777765

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.68  E-value=0.45  Score=45.25  Aligned_cols=73  Identities=11%  Similarity=0.121  Sum_probs=40.2

Q ss_pred             HHHHHHHHcCChhhHHHHHHhCCCCCCH------HHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043068          199 TMIRGYCKMGMIENAKKVFDVMTVKPNL------LAYNTMINGFCK---KGELEEAKKCMNEMMNRGCRPNELTYNAMIY  269 (526)
Q Consensus       199 ~li~~~~~~g~~~~A~~~~~~~~~~p~~------~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  269 (526)
                      .++-.|-...+++...++.+.+...|+.      ..-...+-++.+   .|+.++|++++..+....-.+++.+|..+.+
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            4444566666666666666666322211      111223344445   6777777777777555555566666666665


Q ss_pred             HH
Q 043068          270 GL  271 (526)
Q Consensus       270 ~~  271 (526)
                      .|
T Consensus       226 Iy  227 (374)
T PF13281_consen  226 IY  227 (374)
T ss_pred             HH
Confidence            55

>PRK15331 chaperone protein SicA; Provisional

Probab=96.67  E-value=0.072  Score=43.80  Aligned_cols=91  Identities=15%  Similarity=0.076  Sum_probs=68.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 043068          373 FRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGN  452 (526)
Q Consensus       373 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  452 (526)
                      ..-+...|++++|..+|+-+.-.+  |...-|..=+.+.+...+++++|...|......+.. |+..+.....+|...|+
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~  120 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRK  120 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCC
Confidence            344567899999999998877633  444445555556566678999999999887776554 66667777888999999


Q ss_pred             HHHHHHHHHHHHHc
Q 043068          453 VENVMQIAHEMVTK  466 (526)
Q Consensus       453 ~~~a~~~~~~m~~~  466 (526)
                      .+.|+..|+..+++
T Consensus       121 ~~~A~~~f~~a~~~  134 (165)
T PRK15331        121 AAKARQCFELVNER  134 (165)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999888873

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.59  E-value=0.039  Score=43.75  Aligned_cols=51  Identities=14%  Similarity=0.043  Sum_probs=25.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHhHHHHHHHHH
Q 043068          257 CRPNELTYNAMIYGLCINGRVDEAKMLMAKMRL-NGFKDNVSTHKSMLKGLC  307 (526)
Q Consensus       257 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~  307 (526)
                      ..|+..+..+++.+|+..|++..|.++++...+ -+++.+..+|..|++-..
T Consensus        48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            345555555555555555555555555554432 234444455555554443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.51  E-value=0.26  Score=38.62  Aligned_cols=62  Identities=18%  Similarity=0.172  Sum_probs=28.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043068          229 YNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNG  291 (526)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  291 (526)
                      ....++.+.+.|+-|+-.++++++.+. -.+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus        89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            344445555555555555555555432 23344445555555555555555555555555544

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.48  E-value=0.86  Score=43.62  Aligned_cols=218  Identities=14%  Similarity=0.127  Sum_probs=99.5

Q ss_pred             hHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---
Q 043068           94 CYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVR---  170 (526)
Q Consensus        94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---  170 (526)
                      .|..-...+...++-+.|....+++.+.++..--.+...|.-..+-+.....|+...+.-    ..-|. .+..-+.   
T Consensus       304 vw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L----~r~ys-~~~s~~~s~~  378 (660)
T COG5107         304 VWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDL----KRKYS-MGESESASKV  378 (660)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHhhhHHHHHHHH----HHHHh-hhhhhhhccc
Confidence            344444555666777788888887765554422223333433444444444444432100    00000 0000000   


Q ss_pred             cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC---C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 043068          171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM---T-VKPNLLAYNTMINGFCKKGELEEAK  246 (526)
Q Consensus       171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~-~~p~~~~~~~li~~~~~~g~~~~A~  246 (526)
                      -|+++...+++-.-+     ..=..+|..+++...+..-++.|..+|-+.   + +.+++..+++++.-++ .|+..-|.
T Consensus       379 D~N~e~~~Ell~kr~-----~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~  452 (660)
T COG5107         379 DNNFEYSKELLLKRI-----NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAY  452 (660)
T ss_pred             cCCccccHHHHHHHH-----hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHH
Confidence            122221111111100     112345555555555555566666666555   1 3345555555555443 35555566


Q ss_pred             HHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068          247 KCMNEMMNRGCRPNELTY-NAMIYGLCINGRVDEAKMLMAKMRLNGFKDN--VSTHKSMLKGLCVVGKFDQAVGYLRNVM  323 (526)
Q Consensus       247 ~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~  323 (526)
                      ++|+--...  -||...| ...+..+...++-+.|..+|+....+ +..+  ..+|..+|+.-..-|+...+..+=+.+.
T Consensus       453 ~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~  529 (660)
T COG5107         453 NIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR  529 (660)
T ss_pred             HHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence            666543333  2233332 33444555556666666666643322 0111  3455556665566666666555555554


Q ss_pred             Hc
Q 043068          324 EA  325 (526)
Q Consensus       324 ~~  325 (526)
                      +.
T Consensus       530 e~  531 (660)
T COG5107         530 EL  531 (660)
T ss_pred             HH
Confidence            43

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.42  E-value=0.0092  Score=42.98  Aligned_cols=24  Identities=21%  Similarity=0.045  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Q 043068          264 YNAMIYGLCINGRVDEAKMLMAKM  287 (526)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~~  287 (526)
                      +..+..++...|++++|++++++.
T Consensus        49 ~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen   49 LNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            334444444444444444444433

...

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.33  E-value=1.5  Score=44.81  Aligned_cols=115  Identities=13%  Similarity=0.188  Sum_probs=82.3

Q ss_pred             CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043068          293 KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAV  372 (526)
Q Consensus       293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  372 (526)
                      ....-+.+--+.-+...|+..+|.++-.+..    -||-..|-.-+.+++..+++++-+++-+.++      .+.-|...
T Consensus       681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PF  750 (829)
T KOG2280|consen  681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPF  750 (829)
T ss_pred             ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhH
Confidence            3444455566677778899889887766543    4688888888899999999988777766554      35667788


Q ss_pred             HHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 043068          373 FRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDR  427 (526)
Q Consensus       373 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~  427 (526)
                      ..+|.+.|+.++|.+++-+....   +      -...+|.+. |++.+|.++.-+
T Consensus       751 Ve~c~~~~n~~EA~KYiprv~~l---~------ekv~ay~~~-~~~~eAad~A~~  795 (829)
T KOG2280|consen  751 VEACLKQGNKDEAKKYIPRVGGL---Q------EKVKAYLRV-GDVKEAADLAAE  795 (829)
T ss_pred             HHHHHhcccHHHHhhhhhccCCh---H------HHHHHHHHh-ccHHHHHHHHHH
Confidence            89999999999999998876642   1      233455554 777777665543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.22  E-value=1  Score=41.74  Aligned_cols=59  Identities=10%  Similarity=-0.006  Sum_probs=31.5

Q ss_pred             hHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068          160 SYNSLLGVLVRVNSI---KLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM  220 (526)
Q Consensus       160 ~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  220 (526)
                      ++..++.+|...+..   ++|.++++.+....  +.....+..-+..+.+.++.+++.+.+.+|
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~m  147 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRM  147 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHH
Confidence            455555566555543   34455555554443  223444545555555566666666666665

It is also involved in sporulation [].

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.15  E-value=0.19  Score=49.91  Aligned_cols=217  Identities=12%  Similarity=0.084  Sum_probs=114.1

Q ss_pred             ChHHHHHHHHhcCC--hhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHH--HHH--
Q 043068           54 GSNIVTKVIYEQTN--PYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDF--FIS--  127 (526)
Q Consensus        54 ~~~~l~~~l~~~~~--~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--  127 (526)
                      .-+.....+.+-.|  +-+-+--++...+.+..|+        -..+++.+.=.|.|.+|.++|++.+..+-.  .|+  
T Consensus       600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~--------~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDl  671 (1081)
T KOG1538|consen  600 DFETARKAYIRVRDLRYLELISELEERKKRGETPN--------DLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDL  671 (1081)
T ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch--------HHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHH
Confidence            33555556655333  2233334444443332222        134566677778888888888887754422  222  


Q ss_pred             ---HHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH------HHHcC--CCCCCHHH
Q 043068          128 ---KLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQ------IVKEN--VVPPDVST  196 (526)
Q Consensus       128 ---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------~~~~~--~~~~~~~~  196 (526)
                         -++.-|...|..++-..+..+-..  ...++.--.+...++...|+.++|..+.-+      +.+.+  .-..+..+
T Consensus       672 RMFD~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~  749 (1081)
T KOG1538|consen  672 RMFDYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREP  749 (1081)
T ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhH
Confidence               233445555555544433332111  001111112344555566666666554211      11111  01234455


Q ss_pred             HHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-----------HH
Q 043068          197 YTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELT-----------YN  265 (526)
Q Consensus       197 ~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-----------~~  265 (526)
                      ...+..-+.+...+.-|-++|.+|+..      ..+++.....+++++|..+-+..-+.  .||...           |.
T Consensus       750 l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFe  821 (1081)
T KOG1538|consen  750 LLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFE  821 (1081)
T ss_pred             HHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHH
Confidence            666666666777888899999988632      24667788889999999887765543  333221           22


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Q 043068          266 AMIYGLCINGRVDEAKMLMAKMR  288 (526)
Q Consensus       266 ~li~~~~~~g~~~~a~~~~~~~~  288 (526)
                      ..-.+|.++|+-.+|..+++++.
T Consensus       822 EAqkAfhkAGr~~EA~~vLeQLt  844 (1081)
T KOG1538|consen  822 EAQKAFHKAGRQREAVQVLEQLT  844 (1081)
T ss_pred             HHHHHHHHhcchHHHHHHHHHhh
Confidence            23344555566666666655553

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.14  E-value=0.02  Score=41.23  Aligned_cols=61  Identities=21%  Similarity=0.261  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCC-HHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068          263 TYNAMIYGLCINGRVDEAKMLMAKMRLN----GF-KDN-VSTHKSMLKGLCVVGKFDQAVGYLRNVM  323 (526)
Q Consensus       263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~  323 (526)
                      +|+.+...|...|++++|+..|++..+.    |- .++ ..++..+...|...|++++|++.+++..
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444444555555555555555444321    10 011 3345555555666666666666655544

...

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.13  E-value=0.01  Score=37.13  Aligned_cols=40  Identities=10%  Similarity=0.113  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhH
Q 043068          438 TMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFL  477 (526)
Q Consensus       438 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  477 (526)
                      .+|..+..+|.+.|++++|+++++++++..|+.+.....+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            4678888999999999999999999999999877654443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.13  E-value=0.99  Score=40.92  Aligned_cols=52  Identities=13%  Similarity=0.050  Sum_probs=24.4

Q ss_pred             HHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068          133 YGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIV  185 (526)
Q Consensus       133 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  185 (526)
                      ....|++.+|...|........ .+...--.++..|...|+++.|..++..+.
T Consensus       144 ~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP  195 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALP  195 (304)
T ss_pred             hhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence            3444555555555555444332 122333344445555555555555555443

>PRK15331 chaperone protein SicA; Provisional

Probab=96.10  E-value=0.14  Score=42.07  Aligned_cols=91  Identities=15%  Similarity=-0.012  Sum_probs=48.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068          232 MINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGK  311 (526)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  311 (526)
                      ...-+...|++++|..+|.-+.-.++- +..-+..|..++-..+++++|+..|......+ ..|+..+--...+|...|+
T Consensus        43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~  120 (165)
T PRK15331         43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK  120 (165)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence            333444556666666666655544322 33444555555555666666666665554433 2333333345555666666


Q ss_pred             HHHHHHHHHHHHH
Q 043068          312 FDQAVGYLRNVME  324 (526)
Q Consensus       312 ~~~A~~~~~~~~~  324 (526)
                      .+.|...|....+
T Consensus       121 ~~~A~~~f~~a~~  133 (165)
T PRK15331        121 AAKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHHh
Confidence            6666666655554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.10  E-value=0.08  Score=52.13  Aligned_cols=102  Identities=14%  Similarity=0.123  Sum_probs=47.0

Q ss_pred             HHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 043068          101 VLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEF  180 (526)
Q Consensus       101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  180 (526)
                      +..+.|+++.|.++.++..  ++..|..|.....+.|+++-|.+.|.+...         |..|+-.|.-.|+.+.-.++
T Consensus       327 LAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl  395 (443)
T PF04053_consen  327 LALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKL  395 (443)
T ss_dssp             HHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHH
Confidence            3344455555544443332  344555555555555555555555554321         33444455555555555555


Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068          181 FHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM  220 (526)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  220 (526)
                      .+.....|       -++....++.-.|++++..+++.+.
T Consensus       396 ~~~a~~~~-------~~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  396 AKIAEERG-------DINIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHHHHTT--------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             HHHHHHcc-------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            54444444       1333334444445555555555444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.07  E-value=0.35  Score=47.75  Aligned_cols=130  Identities=18%  Similarity=0.175  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH
Q 043068          229 YNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV  308 (526)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  308 (526)
                      .+.++..+.+.|..+.|+++.++-..+            .....+.|+++.|.++.++      ..+...|..|.+...+
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~  359 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR  359 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence            445555555555555555543322111            2233345555555544432      2344455555555555


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043068          309 VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILL  388 (526)
Q Consensus       309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  388 (526)
                      .|+++-|++.|.+...         +..|+-.|...|+.+.-.++.+.....|-      ++....++.-.|+.++..++
T Consensus       360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~l  424 (443)
T PF04053_consen  360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDL  424 (443)
T ss_dssp             TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred             cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHH
Confidence            5555555555544322         34444455555555555555554444431      23333344444555555555


Q ss_pred             HHH
Q 043068          389 LKQ  391 (526)
Q Consensus       389 ~~~  391 (526)
                      +.+
T Consensus       425 L~~  427 (443)
T PF04053_consen  425 LIE  427 (443)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.98  E-value=0.56  Score=46.98  Aligned_cols=45  Identities=22%  Similarity=0.207  Sum_probs=20.4

Q ss_pred             ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHh
Q 043068          173 SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDV  219 (526)
Q Consensus       173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  219 (526)
                      ..+.|.+++..+.++-  |......-.-.+.+...|++++|.+.|++
T Consensus       248 ~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~  292 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFER  292 (468)
T ss_pred             CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3445555555555442  22222222333444445555555555554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.95  E-value=1.7  Score=43.66  Aligned_cols=176  Identities=17%  Similarity=0.200  Sum_probs=102.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHH
Q 043068          300 KSMLKGLCVVGKFDQAVGYLRNVMEANMNPDV------KSYEVVINGFCK----IGKSDEAISLLKEMRARGLKPTVFSF  369 (526)
Q Consensus       300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~  369 (526)
                      ..+++...=.|+-+.+++.+.+..+.+--...      -.|..++..++.    ..+.+.|.+++..+.++  -|+...|
T Consensus       192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf  269 (468)
T PF10300_consen  192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF  269 (468)
T ss_pred             HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence            34555555567777777777665553211111      223444444433    34567888888888876  6776655


Q ss_pred             HHH-HHHHHHcCCHHHHHHHHHHcccCCC-Cc--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043068          370 NAV-FRILVENGELDRAILLLKQMPQMDC-LP--NFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLK  445 (526)
Q Consensus       370 ~~l-i~~~~~~g~~~~a~~~~~~~~~~~~-~p--~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  445 (526)
                      ... .+.+...|++++|++.|++...... -+  ....+.-+.-.+... +++++|.+.+.++.+.. ..+..+|..+..
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~-~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a  347 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ-HDWEEAAEYFLRLLKES-KWSKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH-chHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence            443 3556678888888888887654110 01  112222222233344 78888888888888754 335556655554


Q ss_pred             HH-HhCCCH-------HHHHHHHHHHHHcCC----CccchhhhHHH
Q 043068          446 GY-CEEGNV-------ENVMQIAHEMVTKKG----RLLKLKNFLTR  479 (526)
Q Consensus       446 ~~-~~~g~~-------~~a~~~~~~m~~~~~----~~~~~~~~~~~  479 (526)
                      +| ...|+.       ++|.++|.+......    +..+...|...
T Consensus       348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~R  393 (468)
T PF10300_consen  348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIR  393 (468)
T ss_pred             HHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHH
Confidence            43 567777       888888887754433    34455555433

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.91  E-value=1  Score=46.52  Aligned_cols=252  Identities=12%  Similarity=0.118  Sum_probs=144.4

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 043068          197 YTTMIRGYCKMGMIENAKKVFDVMTVKPNLL--AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCIN  274 (526)
Q Consensus       197 ~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  274 (526)
                      ...-+..+++...++-|+.+-+.-+..++..  ......+-+.+.|++++|...|-+-+.. +.|.     .++.-|...
T Consensus       337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda  410 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA  410 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence            4455677777778888888777765444322  2334445566788888888888776543 2332     234555666


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHH
Q 043068          275 GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN-PDVKSYEVVINGFCKIGKSDEAISL  353 (526)
Q Consensus       275 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~  353 (526)
                      .+..+--.+++.+.+.|+ .+...-+.|+.+|.+.++.++-.++.+... .|.. .|   ....+..+.+.+-.++|..+
T Consensus       411 q~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~L  485 (933)
T KOG2114|consen  411 QRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELL  485 (933)
T ss_pred             HHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHH
Confidence            677777778888888874 555566778888888888888766665543 2211 12   34456666667777777766


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC
Q 043068          354 LKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGH  433 (526)
Q Consensus       354 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~  433 (526)
                      -.+...     +......   .+-..|++++|++++..+.-...-+....|...+   .  ....++...++-+......
T Consensus       486 A~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp~~e~l~~l~kyGk~L---l--~h~P~~t~~ili~~~t~~~  552 (933)
T KOG2114|consen  486 ATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLPISELLRTLNKYGKIL---L--EHDPEETMKILIELITELN  552 (933)
T ss_pred             HHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHH---H--hhChHHHHHHHHHHHhhcC
Confidence            554432     2333333   3445688999999888875322223334443333   1  1345555555544443322


Q ss_pred             CCCHHHHH-----HHHHHHHhCCCHHHHHHHHHHHHHcCCCccc
Q 043068          434 NLDFTMYS-----CLLKGYCEEGNVENVMQIAHEMVTKKGRLLK  472 (526)
Q Consensus       434 ~p~~~~~~-----~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~  472 (526)
                      +++.....     .+-..+.-.++++.....++.|.+..+..+.
T Consensus       553 ~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e  596 (933)
T KOG2114|consen  553 SQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE  596 (933)
T ss_pred             CCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence            11111111     1111223345666666666667666655544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.89  E-value=0.17  Score=48.91  Aligned_cols=62  Identities=15%  Similarity=-0.016  Sum_probs=43.9

Q ss_pred             ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068          157 CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDV---STYTTMIRGYCKMGMIENAKKVFDVM  220 (526)
Q Consensus       157 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~  220 (526)
                      +...++.+..+|.+.|++++|+..|++.++.+  |.+.   .+|..+..+|.+.|+.++|++.+++.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA  138 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTA  138 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46677777777777777777777777777664  3333   34777777777777777777777765

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.85  E-value=1.2  Score=39.53  Aligned_cols=188  Identities=12%  Similarity=0.130  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043068          261 ELTYNAMIYGLCINGRVDEAKMLMAKMRLNG--FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVI  338 (526)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li  338 (526)
                      ...|+.-+ .-.+.|++++|.+.|+.+...-  -+-...+...++.++.+.+++++|+...++.....+.....-|-..|
T Consensus        35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          35 SELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            33444443 3446788888888888877542  12233455556777778888888888888877764433333444444


Q ss_pred             HHHHhcC-------Chh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHH
Q 043068          339 NGFCKIG-------KSD---EAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTII  408 (526)
Q Consensus       339 ~~~~~~g-------~~~---~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll  408 (526)
                      .+++..-       +..   .|+.-|++++++  -||..             -...|..-...+..     -..-+...|
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d-----~LA~~Em~I  173 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLND-----ALAGHEMAI  173 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHH-----HHHHHHHHH
Confidence            4444221       222   333444444433  23321             11112111111111     011233334


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc
Q 043068          409 CGLCMAKGRMQDVEDLVDRMIRSGHNLDF---TMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRL  470 (526)
Q Consensus       409 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~  470 (526)
                      .-+....|.+..|..-+++|++. .+-..   ..+-.+..+|.+.|-.++|.+.-+-+..+.++.
T Consensus       174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence            44444458888899999999886 33233   345566778999999999998876666665544

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.80  E-value=0.12  Score=48.60  Aligned_cols=93  Identities=19%  Similarity=0.207  Sum_probs=47.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHH-HHHHHHHH
Q 043068          160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAY-NTMINGFC  237 (526)
Q Consensus       160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~li~~~~  237 (526)
                      +++.+..++.+.+++..|++..+..+..+  ++|.....--..++...|+++.|+..|+++ .+.|+...- +-++.+--
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            44555555566666666666666665555  555555555556666666666666666555 334433322 22333333


Q ss_pred             hcCCH-HHHHHHHHHHHH
Q 043068          238 KKGEL-EEAKKCMNEMMN  254 (526)
Q Consensus       238 ~~g~~-~~A~~~~~~m~~  254 (526)
                      +.... +...++|..|..
T Consensus       337 k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  337 KIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            32222 223455555544

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.76  E-value=0.25  Score=46.66  Aligned_cols=92  Identities=16%  Similarity=0.066  Sum_probs=44.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHc-----CCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHh
Q 043068          233 INGFCKKGELEEAKKCMNEMMNR-----GCRP---------NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVST  298 (526)
Q Consensus       233 i~~~~~~g~~~~A~~~~~~m~~~-----g~~p---------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  298 (526)
                      .+.|.+.|++..|...|++....     +..+         -...+..+.-+|.+.+++..|+....+.+..+ ++|+..
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA  293 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA  293 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence            34566777777777777665432     0110         11223334444444455555555444444443 344444


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068          299 HKSMLKGLCVVGKFDQAVGYLRNVMEA  325 (526)
Q Consensus       299 ~~~li~~~~~~g~~~~A~~~~~~~~~~  325 (526)
                      .-.-..+|...|+++.|...|+++++.
T Consensus       294 LyRrG~A~l~~~e~~~A~~df~ka~k~  320 (397)
T KOG0543|consen  294 LYRRGQALLALGEYDLARDDFQKALKL  320 (397)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            444444444444455555544444443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.68  E-value=1.1  Score=43.72  Aligned_cols=152  Identities=17%  Similarity=0.138  Sum_probs=89.1

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043068          309 VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILL  388 (526)
Q Consensus       309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  388 (526)
                      ..-..+|++++++..+.+-.    .+..- ......|.      .++....+...|-..+=..+..++-+.|+.++|++.
T Consensus       213 A~Ti~Eae~l~rqAvkAgE~----~lg~s-~~~~~~g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~  281 (539)
T PF04184_consen  213 ASTIVEAEELLRQAVKAGEA----SLGKS-QFLQHHGH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKM  281 (539)
T ss_pred             ccCHHHHHHHHHHHHHHHHH----hhchh-hhhhcccc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHH
Confidence            44578888888887765311    11100 00011111      112222222223333334567777899999999999


Q ss_pred             HHHcccCC-CCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCC--------------
Q 043068          389 LKQMPQMD-CLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLD-FTMYSCLLKGYCEEGN--------------  452 (526)
Q Consensus       389 ~~~~~~~~-~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--------------  452 (526)
                      +++|.+.. ...+......|+..+... +.+.++..++.+--+...+.+ ...|+..+-.+...|+              
T Consensus       282 ~rdLlke~p~~~~l~IrenLie~LLel-q~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~  360 (539)
T PF04184_consen  282 FRDLLKEFPNLDNLNIRENLIEALLEL-QAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSP  360 (539)
T ss_pred             HHHHHhhCCccchhhHHHHHHHHHHhc-CCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCCh
Confidence            99998632 112334556677777766 999999999999754322222 2456665544443333              


Q ss_pred             -HHHHHHHHHHHHHcCCCccc
Q 043068          453 -VENVMQIAHEMVTKKGRLLK  472 (526)
Q Consensus       453 -~~~a~~~~~~m~~~~~~~~~  472 (526)
                       -..|.+.+++..+.|+..|+
T Consensus       361 ae~~aveAi~RAvefNPHVp~  381 (539)
T PF04184_consen  361 AEMNAVEAIHRAVEFNPHVPK  381 (539)
T ss_pred             hHHHHHHHHHHHHHhCCCCch
Confidence             13467889999999987663

The molecular function of this protein is uncertain.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.68  E-value=1.8  Score=40.12  Aligned_cols=224  Identities=14%  Similarity=0.138  Sum_probs=113.5

Q ss_pred             HhcCCHHHHHHHHHHHHHcC--CCCCHH------HHHHHHHHHHHcC-CHHHHHHHHHHHHHc--------CCCCC----
Q 043068          237 CKKGELEEAKKCMNEMMNRG--CRPNEL------TYNAMIYGLCING-RVDEAKMLMAKMRLN--------GFKDN----  295 (526)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g--~~p~~~------~~~~li~~~~~~g-~~~~a~~~~~~~~~~--------~~~~~----  295 (526)
                      .+.|+.+.|..++.+....-  ..|+..      .|+.-.. ..+.+ +++.|..++++..+.        ...++    
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            35566777777666665432  122211      1222222 23344 777776666655332        11222    


Q ss_pred             -HHhHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 043068          296 -VSTHKSMLKGLCVVGKFD---QAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNA  371 (526)
Q Consensus       296 -~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~  371 (526)
                       ..+...++.+|...+..+   +|..+++.+...... ....+-.-+..+.+.++.+++.+.+.+|...- .-....+..
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~  160 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS  160 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence             245666777887776654   455566666544322 34455555666666888888888888888652 212334444


Q ss_pred             HHHHH---HHcCCHHHHHHHHHHcccCCCCcCHH-HH-HHHHHHH--HhcC------CCHHHHHHHHHHHHHC-CCCCCH
Q 043068          372 VFRIL---VENGELDRAILLLKQMPQMDCLPNFV-SY-NTIICGL--CMAK------GRMQDVEDLVDRMIRS-GHNLDF  437 (526)
Q Consensus       372 li~~~---~~~g~~~~a~~~~~~~~~~~~~p~~~-~~-~~ll~~~--~~~~------g~~~~a~~~~~~~~~~-~~~p~~  437 (526)
                      ++..+   .... ...|...+..+....+.|... .. ..++...  +...      ++++...++++...+. +.+.+.
T Consensus       161 ~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~  239 (278)
T PF08631_consen  161 ILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA  239 (278)
T ss_pred             HHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence            44443   3333 345556665555433444442 11 1111111  1111      1244455555533321 233333


Q ss_pred             HHHH---HH----HHHHHhCCCHHHHHHHHHHHH
Q 043068          438 TMYS---CL----LKGYCEEGNVENVMQIAHEMV  464 (526)
Q Consensus       438 ~~~~---~l----~~~~~~~g~~~~a~~~~~~m~  464 (526)
                      .+-.   +|    +..+.+.+++++|.+.|+-.+
T Consensus       240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            3322   22    334677899999999887543

It is also involved in sporulation [].

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.65  E-value=0.4  Score=38.04  Aligned_cols=82  Identities=9%  Similarity=0.047  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHh---------------cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQ---------------IENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENV  189 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  189 (526)
                      ++..++.++++.|+.+....+.+..=.               ....|+..+..+++.+|+..|++..|.++.+...+.-+
T Consensus         4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~   83 (126)
T PF12921_consen    4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP   83 (126)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence            445555555555555555555443211               11224555555555566555666666666655555544


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 043068          190 VPPDVSTYTTMIRGYCK  206 (526)
Q Consensus       190 ~~~~~~~~~~li~~~~~  206 (526)
                      ++-+..+|..|+.-...
T Consensus        84 I~i~~~~W~~Ll~W~~v  100 (126)
T PF12921_consen   84 IPIPKEFWRRLLEWAYV  100 (126)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            55555555555554443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.59  E-value=1  Score=36.67  Aligned_cols=41  Identities=17%  Similarity=0.143  Sum_probs=19.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 043068          232 MINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCI  273 (526)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  273 (526)
                      ++..+.+.+.......+++.+...+. .+...++.++..|++
T Consensus        13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~   53 (140)
T smart00299       13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK   53 (140)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence            44444444455555555555544432 344444555555544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.48  E-value=1.6  Score=38.39  Aligned_cols=201  Identities=14%  Similarity=0.160  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HH
Q 043068          264 YNAMIYGLCINGRVDEAKMLMAKMRLN-GFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVIN-GF  341 (526)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~-~~  341 (526)
                      +......+...+++..+...+...... ........+......+...+++..+...+.........+ ......... .+
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  140 (291)
T COG0457          62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGAL  140 (291)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHH
Confidence            333334444444444444444443321 112233333334444444444444444444444432221 111111111 45


Q ss_pred             HhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhcCCC
Q 043068          342 CKIGKSDEAISLLKEMRARGL--KPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN--FVSYNTIICGLCMAKGR  417 (526)
Q Consensus       342 ~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~g~  417 (526)
                      ...|+++.|...+.+......  ......+......+...++.+.+...+.......  ++  ...+..+-..+... ++
T Consensus       141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~  217 (291)
T COG0457         141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN--PDDDAEALLNLGLLYLKL-GK  217 (291)
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--cccchHHHHHhhHHHHHc-cc
Confidence            555555555555555533110  0112223333333455566666666666665522  22  33344444443333 56


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 043068          418 MQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGR  469 (526)
Q Consensus       418 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  469 (526)
                      .+++...+......... ....+..+...+...|..+++...+.+..+..+.
T Consensus       218 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         218 YEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            66676666666653222 2344444444444556677777777777666653

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.36  E-value=0.31  Score=47.08  Aligned_cols=68  Identities=15%  Similarity=0.057  Sum_probs=58.3

Q ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043068          120 KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACL--YSYNSLLGVLVRVNSIKLAEEFFHQIVKE  187 (526)
Q Consensus       120 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~  187 (526)
                      +.++..++.+..+|.+.|++++|+..|++..+.++....  .+|..+..+|...|++++|++.+++.++.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455678899999999999999999999999888742211  46899999999999999999999999875

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.32  E-value=1.3  Score=36.09  Aligned_cols=83  Identities=14%  Similarity=0.207  Sum_probs=37.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 043068          302 MLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGE  381 (526)
Q Consensus       302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  381 (526)
                      ++..+.+.+.......+++.+...+. .+....+.++..|++.+ .++.++.++.      ..+......++..|.+.+.
T Consensus        13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l   84 (140)
T smart00299       13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL   84 (140)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence            44444444455555555555554442 34445555555555432 2233333321      0122223345555555555


Q ss_pred             HHHHHHHHHHc
Q 043068          382 LDRAILLLKQM  392 (526)
Q Consensus       382 ~~~a~~~~~~~  392 (526)
                      ++++.-++.++
T Consensus        85 ~~~~~~l~~k~   95 (140)
T smart00299       85 YEEAVELYKKD   95 (140)
T ss_pred             HHHHHHHHHhh
Confidence            55555555554

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.25  E-value=0.2  Score=44.62  Aligned_cols=89  Identities=10%  Similarity=0.122  Sum_probs=55.3

Q ss_pred             CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------------CHHHHH
Q 043068          223 KPNLLAYNTMINGFCK-----KGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCING----------------RVDEAK  281 (526)
Q Consensus       223 ~p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------------~~~~a~  281 (526)
                      +.|..+|-+.+..+..     .+.++-....++.|.+-|+.-|..+|+.|++.+-+..                +-+-++
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I  143 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI  143 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence            3455556555555543     3456666666667777777777777777766653321                223466


Q ss_pred             HHHHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068          282 MLMAKMRLNGFKDNVSTHKSMLKGLCVVGK  311 (526)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  311 (526)
                      +++++|...|+.||..+-..+++++.+.+-
T Consensus       144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            677777777777777777777777766554

>PRK11906 transcriptional regulator; Provisional

Probab=95.23  E-value=1  Score=43.77  Aligned_cols=109  Identities=13%  Similarity=0.050  Sum_probs=63.9

Q ss_pred             CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHH
Q 043068          138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVF  217 (526)
Q Consensus       138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  217 (526)
                      ...+|.++-++..+.+. .|..+...+..+..-.++++.|..+|++....+  |....+|....-...-.|+.++|.+.+
T Consensus       319 ~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i  395 (458)
T PRK11906        319 AAQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICI  395 (458)
T ss_pred             HHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            44556666666666664 456666666666666666777777777776665  445555655555566667777777777


Q ss_pred             Hh-CCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHH
Q 043068          218 DV-MTVKPNLL---AYNTMINGFCKKGELEEAKKCMN  250 (526)
Q Consensus       218 ~~-~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~  250 (526)
                      ++ +...|...   .....++.|+. ...+.|+++|-
T Consensus       396 ~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  431 (458)
T PRK11906        396 DKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYY  431 (458)
T ss_pred             HHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHHh
Confidence            76 34444332   23333444443 33455555553

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.16  E-value=0.69  Score=37.23  Aligned_cols=72  Identities=10%  Similarity=0.128  Sum_probs=37.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043068          270 GLCINGRVDEAKMLMAKMRLNGF--KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGF  341 (526)
Q Consensus       270 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~  341 (526)
                      ...+.|++++|.+.|+.+...-.  +-....-..++.+|.+.+++++|...+++.++.++..-..-|-..+.++
T Consensus        19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL   92 (142)
T PF13512_consen   19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL   92 (142)
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence            33455666666666666654410  1122344446666666666666666666666654432223343334443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.14  E-value=2.1  Score=37.67  Aligned_cols=144  Identities=13%  Similarity=0.094  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCC--CCHHHHHHHH
Q 043068          264 YNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA---NMN--PDVKSYEVVI  338 (526)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~--~~~~~~~~li  338 (526)
                      |+.....|...|..+.|-..+++.-+                ....-++++|+++|++....   +-.  --...+...-
T Consensus        94 ~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s  157 (308)
T KOG1585|consen   94 YEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS  157 (308)
T ss_pred             HHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence            44444555555555555555444322                12334566666666654321   100  0112344445


Q ss_pred             HHHHhcCChhHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHccc---CCCCcCHHHHHHHHHH
Q 043068          339 NGFCKIGKSDEAISLLKEMRAR----GLKPTV-FSFNAVFRILVENGELDRAILLLKQMPQ---MDCLPNFVSYNTIICG  410 (526)
Q Consensus       339 ~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~p~~~~~~~ll~~  410 (526)
                      ..+.+...+++|-..+.+-...    .-.++. ..|-..|-.+....++..|.+.++.-.+   ..-.-+..+...|+.+
T Consensus       158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a  237 (308)
T KOG1585|consen  158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA  237 (308)
T ss_pred             hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence            5666666666665555433211    111121 2355555566667788888888877433   2223456677777777


Q ss_pred             HHhcCCCHHHHHHHH
Q 043068          411 LCMAKGRMQDVEDLV  425 (526)
Q Consensus       411 ~~~~~g~~~~a~~~~  425 (526)
                      | .. |+.+++..++
T Consensus       238 y-d~-gD~E~~~kvl  250 (308)
T KOG1585|consen  238 Y-DE-GDIEEIKKVL  250 (308)
T ss_pred             h-cc-CCHHHHHHHH
Confidence            5 33 7777766554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.09  E-value=0.071  Score=33.24  Aligned_cols=39  Identities=15%  Similarity=0.307  Sum_probs=21.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 043068          160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTM  200 (526)
Q Consensus       160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  200 (526)
                      ++..+...|.+.|++++|+++|+++++..  |.|...+..+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHHh
Confidence            34455555666666666666666666554  5555555444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.05  E-value=0.79  Score=36.89  Aligned_cols=76  Identities=14%  Similarity=0.073  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 043068           95 YTAITDVLLSHSLISIAASLLKNSN------KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVL  168 (526)
Q Consensus        95 ~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~  168 (526)
                      +..-+....+.|++.+|.+.|+...      .-.....-.|+.+|.+.|++++|+..+++.++.++...-..|...+.++
T Consensus        13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL   92 (142)
T PF13512_consen   13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL   92 (142)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence            3334555566666777666666432      2233445567777888888888888888877777543344455555554


Q ss_pred             Hh
Q 043068          169 VR  170 (526)
Q Consensus       169 ~~  170 (526)
                      +.
T Consensus        93 ~~   94 (142)
T PF13512_consen   93 SY   94 (142)
T ss_pred             HH
Confidence            43

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.77  E-value=3.2  Score=37.82  Aligned_cols=141  Identities=13%  Similarity=0.144  Sum_probs=90.7

Q ss_pred             HHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCH
Q 043068          166 GVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNT---MINGFCKKGEL  242 (526)
Q Consensus       166 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---li~~~~~~g~~  242 (526)
                      ......|++.+|..+|+......  +.+...-..++.+|...|+.+.|..++..++..-....+..   -|..+.+....
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~  219 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT  219 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence            35667899999999999998876  66778888899999999999999999999854333333332   34444454444


Q ss_pred             HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHHcCC
Q 043068          243 EEAKKCMNEMMNRGCRP-NELTYNAMIYGLCINGRVDEAKMLMAKMRLNG-FKDNVSTHKSMLKGLCVVGK  311 (526)
Q Consensus       243 ~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~  311 (526)
                      .+...+-.+.-.   .| |...-..+...+...|+.+.|.+.+-.+.+.. ---|...-..+++.+.-.|.
T Consensus       220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~  287 (304)
T COG3118         220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP  287 (304)
T ss_pred             CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence            444444444433   23 55555566677777777777777666554331 12334445555555555553

>PRK11906 transcriptional regulator; Provisional

Probab=94.76  E-value=3.3  Score=40.37  Aligned_cols=149  Identities=9%  Similarity=0.061  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 043068          312 FDQAVGYLRNVMEA-NMNPD-VKSYEVVINGFCK---------IGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENG  380 (526)
Q Consensus       312 ~~~A~~~~~~~~~~-~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  380 (526)
                      .+.|+.+|.+.... ...|+ ...|..+..++..         .....+|.++.++..+.+ .-|......+..+....|
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence            45666667666611 12232 3334333332221         123446666666666664 235666666666666677


Q ss_pred             CHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHH
Q 043068          381 ELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLD-FTMYSCLLKGYCEEGNVENVMQI  459 (526)
Q Consensus       381 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~  459 (526)
                      +.+.|...|++...  +.||...-......++...|+.++|.+.+++.++..+.-- ..+....++.|+.. ..++|+++
T Consensus       353 ~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~  429 (458)
T PRK11906        353 QAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL  429 (458)
T ss_pred             chhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence            78888888888777  3466433222222222224888888888888766433211 22233333355543 35666666


Q ss_pred             HHHHH
Q 043068          460 AHEMV  464 (526)
Q Consensus       460 ~~~m~  464 (526)
                      +-+-.
T Consensus       430 ~~~~~  434 (458)
T PRK11906        430 YYKET  434 (458)
T ss_pred             Hhhcc
Confidence            65433

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=94.70  E-value=2.6  Score=36.44  Aligned_cols=182  Identities=15%  Similarity=0.125  Sum_probs=111.3

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043068          274 NGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISL  353 (526)
Q Consensus       274 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  353 (526)
                      .|-+.-|..-|.+..... +.-+.+||-+.--+...|+++.|.+.|+...+.++.-+-...|.-|..| -.|+++-|.+-
T Consensus        78 lGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d  155 (297)
T COG4785          78 LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDD  155 (297)
T ss_pred             hhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHH
Confidence            344444555555554432 3446688888888889999999999999999987664444444444433 45888888877


Q ss_pred             HHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHH-HHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 043068          354 LKEMRARGLKPTVFSFNAV-FRILVENGELDRAILLL-KQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS  431 (526)
Q Consensus       354 ~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~  431 (526)
                      +...-+.. +.|+  |.+| +..-.+.-++.+|..-+ ++..+    .|..-|...|-.+.-  |++.+ +.+++++.. 
T Consensus       156 ~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL--gkiS~-e~l~~~~~a-  224 (297)
T COG4785         156 LLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL--GKISE-ETLMERLKA-  224 (297)
T ss_pred             HHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH--hhccH-HHHHHHHHh-
Confidence            77665542 1122  2222 11122334566666544 33333    445556666655543  44322 233344332 


Q ss_pred             CCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          432 GHNLD-------FTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       432 ~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                      +-.-+       ..||..|..-|...|+.++|..+|+-.+..++
T Consensus       225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV  268 (297)
T COG4785         225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV  268 (297)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence            11211       35788899999999999999999999888876

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.67  E-value=6.1  Score=40.69  Aligned_cols=181  Identities=14%  Similarity=0.097  Sum_probs=104.3

Q ss_pred             hhHHHHHHHHHHHcCCCCCCHHHHHHHHHH-----HHHcCChhhHHHHHHhCCC-------CCCHHHHHHHHHHHHhcC-
Q 043068          174 IKLAEEFFHQIVKENVVPPDVSTYTTMIRG-----YCKMGMIENAKKVFDVMTV-------KPNLLAYNTMINGFCKKG-  240 (526)
Q Consensus       174 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~p~~~~~~~li~~~~~~g-  240 (526)
                      ...|.+.++...+.|    +......+..+     +....|.+.|+.+|+.+-.       .-......-+..+|.+.. 
T Consensus       228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~  303 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG  303 (552)
T ss_pred             hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence            457888888888877    33333333322     3456788888888877611       113334556666666643 


Q ss_pred             ----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH--HcCCHH
Q 043068          241 ----ELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCI-NGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC--VVGKFD  313 (526)
Q Consensus       241 ----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~  313 (526)
                          +.+.|..+|.+.-+.|.+ +...+...+..... ..+...|.++|....+.|. +...-+.+++....  -..+.+
T Consensus       304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~  381 (552)
T KOG1550|consen  304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLE  381 (552)
T ss_pred             CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHH
Confidence                667788888888877644 44433333222222 2457788899988888773 22222222221111  234678


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043068          314 QAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGL  362 (526)
Q Consensus       314 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  362 (526)
                      .|..++.+..+.| .|...--...+..+.. +.++.+.-.+..+.+.|.
T Consensus       382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~  428 (552)
T KOG1550|consen  382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY  428 (552)
T ss_pred             HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence            8888888888887 3232222233334444 677777766666666543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.65  E-value=0.52  Score=42.21  Aligned_cols=101  Identities=15%  Similarity=0.145  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC-C-CHHHHH
Q 043068          368 SFNAVFRILVENGELDRAILLLKQMPQMDCLPN----FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHN-L-DFTMYS  441 (526)
Q Consensus       368 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~-p-~~~~~~  441 (526)
                      .|+.-+. +.+.|++..|...|...++..  |+    ...+-.|...++.. |++++|..+|..+.+.-++ | -+..+-
T Consensus       144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~q-g~y~~Aa~~f~~~~k~~P~s~KApdall  219 (262)
T COG1729         144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQ-GDYEDAAYIFARVVKDYPKSPKAPDALL  219 (262)
T ss_pred             HHHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhc-ccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence            4655554 356677888888888877642  22    22344455666665 8888888888888775321 1 246777


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCccc
Q 043068          442 CLLKGYCEEGNVENVMQIAHEMVTKKGRLLK  472 (526)
Q Consensus       442 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~  472 (526)
                      .|..+..+.|+.++|...|+++.++.|..+.
T Consensus       220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence            8888888899999999999999888886543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.55  E-value=0.44  Score=42.65  Aligned_cols=93  Identities=19%  Similarity=0.256  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHHcCChhhHHHHHHhC----CC-CCCHHHHHH
Q 043068          160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD---VSTYTTMIRGYCKMGMIENAKKVFDVM----TV-KPNLLAYNT  231 (526)
Q Consensus       160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~----~~-~p~~~~~~~  231 (526)
                      .|+.-+.. .+.|++..|...|...++..  |.+   ...+..|..++...|++++|..+|..+    +. +.-...+--
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            45555533 34555777777777776653  322   223444666666666666666666655    11 112244555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc
Q 043068          232 MINGFCKKGELEEAKKCMNEMMNR  255 (526)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~  255 (526)
                      |..+..+.|+.++|...|+++.++
T Consensus       221 lg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         221 LGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHH
Confidence            556666666666666666666655

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.55  E-value=3  Score=36.62  Aligned_cols=60  Identities=15%  Similarity=0.114  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043068          195 STYTTMIRGYCKMGMIENAKKVFDVMT----VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMN  254 (526)
Q Consensus       195 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  254 (526)
                      ..+......+...+++..+...+....    .......+......+...+++..+.+.+.....
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA  123 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            344444444444455444444444331    112223333444444444445555555544444

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.51  E-value=1.1  Score=41.77  Aligned_cols=227  Identities=13%  Similarity=0.090  Sum_probs=120.0

Q ss_pred             HHhcCChhHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCChhhHHHHH-HhC----CCCC---CHHHHHHHHHHHHh
Q 043068          168 LVRVNSIKLAEEFFHQIVKEN-VVPPDVSTYTTMIRGYCKMGMIENAKKVF-DVM----TVKP---NLLAYNTMINGFCK  238 (526)
Q Consensus       168 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~----~~~p---~~~~~~~li~~~~~  238 (526)
                      +....+.++|+..+.+.+..- ....-..++..+..+.++.|.+++++..- ..|    ....   -...|-.+..++-+
T Consensus        16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~   95 (518)
T KOG1941|consen   16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK   95 (518)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677778877777665431 01112346667777778888777765432 122    1111   12344555555555


Q ss_pred             cCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHHhHHHHHHHHHHc
Q 043068          239 KGELEEAKKCMNEMMNR-GCRP---NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGF-----KDNVSTHKSMLKGLCVV  309 (526)
Q Consensus       239 ~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~  309 (526)
                      .-++.+++.+-+.-... |..|   .-....++..+..-.+.++++++.|+...+...     .....++..+.+.|.+.
T Consensus        96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l  175 (518)
T KOG1941|consen   96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL  175 (518)
T ss_pred             HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence            55556665554443322 2222   112334455666667777777777776653211     11234677777777777


Q ss_pred             CCHHHHHHHHHHHHHc----CCCCCHHHH-----HHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHH
Q 043068          310 GKFDQAVGYLRNVMEA----NMNPDVKSY-----EVVINGFCKIGKSDEAISLLKEMRA----RGLKPT-VFSFNAVFRI  375 (526)
Q Consensus       310 g~~~~A~~~~~~~~~~----~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~li~~  375 (526)
                      .|+++|.-+..+..+.    ++.--..-|     ..|.-++...|....|.+.-++..+    .|-++. ......+.+.
T Consensus       176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI  255 (518)
T KOG1941|consen  176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI  255 (518)
T ss_pred             HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            7777777666554432    222111112     2234455666666666666655432    332221 2234445566


Q ss_pred             HHHcCCHHHHHHHHHHccc
Q 043068          376 LVENGELDRAILLLKQMPQ  394 (526)
Q Consensus       376 ~~~~g~~~~a~~~~~~~~~  394 (526)
                      |-..|+.+.|+.-|+....
T Consensus       256 yR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  256 YRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             HHhcccHhHHHHHHHHHHH
Confidence            6667777776666655443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=94.50  E-value=7.5  Score=40.97  Aligned_cols=198  Identities=11%  Similarity=0.027  Sum_probs=112.6

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHH-------hHHHHH-HHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 043068          272 CINGRVDEAKMLMAKMRLNGFKDNVS-------THKSML-KGLCVVGKFDQAVGYLRNVMEA----NMNPDVKSYEVVIN  339 (526)
Q Consensus       272 ~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li-~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~  339 (526)
                      ....++.+|..++.++...-..|+..       .++.+- ......|+++.|.++.+.....    -..+....+..+..
T Consensus       426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~  505 (894)
T COG2909         426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE  505 (894)
T ss_pred             HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence            45688999999998886543232221       222222 2223468889999888877654    23345666777788


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHHcCCHH--HHHHHHHHcccC--CCC----cCHHHHHH
Q 043068          340 GFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVF-----RILVENGELD--RAILLLKQMPQM--DCL----PNFVSYNT  406 (526)
Q Consensus       340 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-----~~~~~~g~~~--~a~~~~~~~~~~--~~~----p~~~~~~~  406 (526)
                      +..-.|++++|..+..+..+..-.-+...+....     ..+...|+..  +....|......  +-.    +-......
T Consensus       506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~  585 (894)
T COG2909         506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ  585 (894)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence            8888999999998888776542233433332222     2355667332  223333332221  001    22344555


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 043068          407 IICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMY--SCLLKGYCEEGNVENVMQIAHEMVTKKGR  469 (526)
Q Consensus       407 ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  469 (526)
                      ++.++.+..+...++..-++-.......|-...+  ..|+..+...|+.++|...+.++......
T Consensus       586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~  650 (894)
T COG2909         586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN  650 (894)
T ss_pred             HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence            5555544333334444444433333333322222  36778888999999999999998776553

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.41  E-value=0.97  Score=35.44  Aligned_cols=89  Identities=16%  Similarity=0.115  Sum_probs=60.3

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHH---HHHHHHHHHHH
Q 043068          130 IKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVS---TYTTMIRGYCK  206 (526)
Q Consensus       130 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~li~~~~~  206 (526)
                      .-+.+..|+.+.|++.|.+....-+ .....||.-..++.-.|+.++|++-+++.++..+ +.+..   .|..-...|-.
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag-~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAG-DQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHH
Confidence            3456677888888888888776553 4577888888888888888888888887776542 22222   23333455666


Q ss_pred             cCChhhHHHHHHhC
Q 043068          207 MGMIENAKKVFDVM  220 (526)
Q Consensus       207 ~g~~~~A~~~~~~~  220 (526)
                      .|+-+.|..-|+..
T Consensus       128 ~g~dd~AR~DFe~A  141 (175)
T KOG4555|consen  128 LGNDDAARADFEAA  141 (175)
T ss_pred             hCchHHHHHhHHHH
Confidence            77778877777654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=94.24  E-value=0.062  Score=31.29  Aligned_cols=33  Identities=21%  Similarity=0.360  Sum_probs=27.4

Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 043068          425 VDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQ  458 (526)
Q Consensus       425 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  458 (526)
                      +++.++..+. +...|..|...|...|++++|++
T Consensus         2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhcC
Confidence            5677776655 88999999999999999999863

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.23  E-value=2.2  Score=33.67  Aligned_cols=138  Identities=14%  Similarity=0.219  Sum_probs=77.6

Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043068          308 VVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAIL  387 (526)
Q Consensus       308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  387 (526)
                      -.|..++..++..+.....   +..-+|.+|.-....-+-+-..+.++.+-+   -.|..          ..|++.....
T Consensus        14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrVi~   77 (161)
T PF09205_consen   14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRVIE   77 (161)
T ss_dssp             HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHHHH
T ss_pred             HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHHHH
Confidence            3567777777777776642   455566666555544444444555544432   22322          2244444443


Q ss_pred             HHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 043068          388 LLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKK  467 (526)
Q Consensus       388 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  467 (526)
                      .+-.+-     .+.......++.+..+ |+-+.-.+++..+.+ +-.+++...-.+..+|.+.|+..++.+++++.-++|
T Consensus        78 C~~~~n-----~~se~vD~ALd~lv~~-~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   78 CYAKRN-----KLSEYVDLALDILVKQ-GKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHTT--------HHHHHHHHHHHHT-T-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHhc-----chHHHHHHHHHHHHHh-ccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            333322     1233445556666555 888888888888876 346788888999999999999999999999999888


Q ss_pred             C
Q 043068          468 G  468 (526)
Q Consensus       468 ~  468 (526)
                      .
T Consensus       151 ~  151 (161)
T PF09205_consen  151 L  151 (161)
T ss_dssp             -
T ss_pred             h
Confidence            6

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=94.21  E-value=0.48  Score=42.35  Aligned_cols=34  Identities=18%  Similarity=0.141  Sum_probs=22.5

Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 043068          348 DEAISLLKEMRARGLKPTVFSFNAVFRILVENGE  381 (526)
Q Consensus       348 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  381 (526)
                      +-+++++++|...|+.||..+-..|+.++.+.+-
T Consensus       140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            3466677777777777777766677777665554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.17  E-value=3.6  Score=38.05  Aligned_cols=152  Identities=14%  Similarity=0.070  Sum_probs=102.5

Q ss_pred             HHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHH----HHHHHHHhcCC
Q 043068          168 LVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYN----TMINGFCKKGE  241 (526)
Q Consensus       168 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~----~li~~~~~~g~  241 (526)
                      +...|++.+|-..++++++..  |.|...+.-.=.++.-.|+.+.-...++++  .-.+|...|.    .+.-++...|-
T Consensus       113 ~~~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             hhccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence            345678888888888888875  788888888888888888888888888877  2245544332    33445567888


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHHcCCHHHHHHH
Q 043068          242 LEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN---VSTHKSMLKGLCVVGKFDQAVGY  318 (526)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~  318 (526)
                      +++|++.-++..+.+. .|...-.+....+-..|++.++.++..+-...--..+   ..-|=-..-.+...+.++.|+++
T Consensus       191 y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI  269 (491)
T KOG2610|consen  191 YDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI  269 (491)
T ss_pred             chhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence            9999998888877643 3677777788888888888888887765432210000   01111122234556888899988


Q ss_pred             HHHH
Q 043068          319 LRNV  322 (526)
Q Consensus       319 ~~~~  322 (526)
                      |+.-
T Consensus       270 yD~e  273 (491)
T KOG2610|consen  270 YDRE  273 (491)
T ss_pred             HHHH
Confidence            8753

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.16  E-value=5.6  Score=38.19  Aligned_cols=181  Identities=16%  Similarity=0.057  Sum_probs=95.0

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC--HHHH
Q 043068          330 DVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKP---TVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN--FVSY  404 (526)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~  404 (526)
                      ...+|..++..+.+.|.++.|...+.++...+...   +....-.-+..+...|+..+|+..++...+..+..+  ....
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~  224 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN  224 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence            45567777888888888888888888777643111   233444455666777888888888877776322221  1111


Q ss_pred             HHHHHHHHhc-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHcCCCccchhhhH
Q 043068          405 NTIICGLCMA-KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEE------GNVENVMQIAHEMVTKKGRLLKLKNFL  477 (526)
Q Consensus       405 ~~ll~~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~m~~~~~~~~~~~~~~  477 (526)
                      ..+..++... ............      ...-..++..+..-....      +..+++.+.|++..+..+........+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~  298 (352)
T PF02259_consen  225 AELKSGLLESLEVISSTNLDKES------KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW  298 (352)
T ss_pred             HHHhhccccccccccccchhhhh------HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence            1111110000 000000000000      000112333333333334      788889999999998887666665556


Q ss_pred             HHHHHHHHHHHHHhcCcc--chhHHHHHHHHHHHHHHHhcC
Q 043068          478 TRVVDALLLMWIVTGGSW--ISRFVFVHQVVVIMERTVEDG  516 (526)
Q Consensus       478 ~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~g  516 (526)
                      +...+..+.........-  ......+..++...-+++.-|
T Consensus       299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~  339 (352)
T PF02259_consen  299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLG  339 (352)
T ss_pred             HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhC
Confidence            666665554433222111  245566666777777777433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.05  E-value=4.2  Score=36.30  Aligned_cols=58  Identities=16%  Similarity=0.152  Sum_probs=43.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068          231 TMINGFCKKGELEEAKKCMNEMMNRGCRPN---ELTYNAMIYGLCINGRVDEAKMLMAKMRL  289 (526)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~  289 (526)
                      .+.+.|.+.|.+..|..-+++|++. .+-+   ...+-.+..+|...|-.++|.+.-.-+..
T Consensus       172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            3557788999999999999999887 3322   33456677888899999888877665543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.04  E-value=5.3  Score=37.42  Aligned_cols=126  Identities=12%  Similarity=0.090  Sum_probs=56.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCHHhHHH-
Q 043068          232 MINGFCKKGELEEAKKCMNEMMNRGC-----RPNELTYNAMIYGLCINGRVDEAKMLMAKMRL----NGFKDNVSTHKS-  301 (526)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~-  301 (526)
                      +..++...+.++++++.|+...+...     ......|..|...|.+..++++|.-+..+..+    .++..-..-|.. 
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~  207 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM  207 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence            44445555555555555555443211     11223455555556666666665555444322    121111111221 


Q ss_pred             ----HHHHHHHcCCHHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068          302 ----MLKGLCVVGKFDQAVGYLRNVME----ANMN-PDVKSYEVVINGFCKIGKSDEAISLLKEM  357 (526)
Q Consensus       302 ----li~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m  357 (526)
                          |.-++-..|....|.+..++..+    .|-. ........+.+.|...|+.+.|+.-|++.
T Consensus       208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence                22233445555555554444332    2211 12233445556666666666666555543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=93.88  E-value=2.5  Score=33.20  Aligned_cols=51  Identities=22%  Similarity=0.312  Sum_probs=23.8

Q ss_pred             HHHcCChhhHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043068          204 YCKMGMIENAKKVFDVM-T-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMN  254 (526)
Q Consensus       204 ~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  254 (526)
                      .+..|+++.|++.|.+. . .+.....||.-..++--.|+.++|++-+++..+
T Consensus        53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale  105 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE  105 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence            34445555555555443 1 122344455555555555555555555544444

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.77  E-value=0.16  Score=29.99  Aligned_cols=27  Identities=15%  Similarity=0.279  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043068          439 MYSCLLKGYCEEGNVENVMQIAHEMVT  465 (526)
Q Consensus       439 ~~~~l~~~~~~~g~~~~a~~~~~~m~~  465 (526)
                      +|..|...|.+.|++++|++++++.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            478899999999999999999999653

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=93.72  E-value=5.9  Score=36.91  Aligned_cols=50  Identities=20%  Similarity=0.266  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--c----CChhHHHHHHHHHHHcC
Q 043068          139 VKAAIFWFHQAKQIENGACLYSYNSLLGVLVR--V----NSIKLAEEFFHQIVKEN  188 (526)
Q Consensus       139 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~~~~~~  188 (526)
                      +++.+.+++.+.+.|.+.+..+|-+..-....  .    ....+|.++|+.|++..
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H  133 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH  133 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence            44556788888888887777666554433333  1    23567888888888765

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.64  E-value=3.9  Score=42.13  Aligned_cols=45  Identities=20%  Similarity=0.124  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHH----H-HHHcCCHHHHHHHHHHHHH
Q 043068          242 LEEAKKCMNEMMNRGCRPNELTYNAMIY----G-LCINGRVDEAKMLMAKMRL  289 (526)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~----~-~~~~g~~~~a~~~~~~~~~  289 (526)
                      ...|.++++...+.|..   ..-..+..    + +....+.+.|..+++.+.+
T Consensus       228 ~~~a~~~~~~~a~~g~~---~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~  277 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHS---EAQYALGICYLAGTYGVTQDLESAIEYLKLAAE  277 (552)
T ss_pred             hhHHHHHHHHHHhhcch---HHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence            45677777776666532   22222211    1 3345567777777776655

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.27  E-value=0.23  Score=28.68  Aligned_cols=32  Identities=16%  Similarity=0.242  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 043068          438 TMYSCLLKGYCEEGNVENVMQIAHEMVTKKGR  469 (526)
Q Consensus       438 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  469 (526)
                      .+|..++.+|...|++++|+..|++.++.++.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            57888899999999999999999999888763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.25  E-value=0.27  Score=28.25  Aligned_cols=32  Identities=16%  Similarity=0.246  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 043068          438 TMYSCLLKGYCEEGNVENVMQIAHEMVTKKGR  469 (526)
Q Consensus       438 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  469 (526)
                      ..|..+..+|.+.|++++|++.|++.++..+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            46778888999999999999999999887763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.21  E-value=4.3  Score=33.76  Aligned_cols=54  Identities=13%  Similarity=0.183  Sum_probs=23.1

Q ss_pred             HcCCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043068          134 GDRGNVKAAIFWFHQAKQIENGAC-LYSYNSLLGVLVRVNSIKLAEEFFHQIVKE  187 (526)
Q Consensus       134 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  187 (526)
                      ++.+..++|+.-|..+.+.|...- +-............|+...|...|+++-..
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d  123 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD  123 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence            344555555555555554443211 111112222334445555555555555443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.03  E-value=2.3  Score=42.42  Aligned_cols=133  Identities=18%  Similarity=0.111  Sum_probs=90.8

Q ss_pred             ChHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043068           54 GSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAY  133 (526)
Q Consensus        54 ~~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~  133 (526)
                      ..+.+++.+..+|-.++||.+-       ++|+ .         -.++..+-|+++.|.++..+..  ++.-|..|.+..
T Consensus       616 ~rt~va~Fle~~g~~e~AL~~s-------~D~d-~---------rFelal~lgrl~iA~~la~e~~--s~~Kw~~Lg~~a  676 (794)
T KOG0276|consen  616 IRTKVAHFLESQGMKEQALELS-------TDPD-Q---------RFELALKLGRLDIAFDLAVEAN--SEVKWRQLGDAA  676 (794)
T ss_pred             hhhhHHhHhhhccchHhhhhcC-------CChh-h---------hhhhhhhcCcHHHHHHHHHhhc--chHHHHHHHHHH
Confidence            3456777777777777776543       2222 1         1344566688888888776543  345678888888


Q ss_pred             HcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhH
Q 043068          134 GDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENA  213 (526)
Q Consensus       134 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  213 (526)
                      ...|++..|.+.|.+...         |..|+-.+...|+-+....+-....+.|  ..|     ....+|...|+++++
T Consensus       677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g--~~N-----~AF~~~~l~g~~~~C  740 (794)
T KOG0276|consen  677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG--KNN-----LAFLAYFLSGDYEEC  740 (794)
T ss_pred             hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc--ccc-----hHHHHHHHcCCHHHH
Confidence            889999999988887543         4467777777888777777777776666  323     333456678888888


Q ss_pred             HHHHHhCC
Q 043068          214 KKVFDVMT  221 (526)
Q Consensus       214 ~~~~~~~~  221 (526)
                      .+++.+-+
T Consensus       741 ~~lLi~t~  748 (794)
T KOG0276|consen  741 LELLISTQ  748 (794)
T ss_pred             HHHHHhcC
Confidence            88887764

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.02  E-value=1.3  Score=40.42  Aligned_cols=76  Identities=16%  Similarity=0.270  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 043068          298 THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA-----RGLKPTVFSFNAV  372 (526)
Q Consensus       298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l  372 (526)
                      ++..++..+...|+++.+...++++....+. +...|..++.+|.+.|+...|+..|+++.+     .|+.|...+....
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y  233 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY  233 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence            4445566666666666666666666666544 666666677777777777776666666644     3566655554443


Q ss_pred             HH
Q 043068          373 FR  374 (526)
Q Consensus       373 i~  374 (526)
                      ..
T Consensus       234 ~~  235 (280)
T COG3629         234 EE  235 (280)
T ss_pred             HH
Confidence            33

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.01  E-value=1.8  Score=36.90  Aligned_cols=61  Identities=21%  Similarity=0.262  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN--ELTYNAMIYGLCINGRVDEAKMLMAKMR  288 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~  288 (526)
                      .+..+...|++.|+.+.|++.|.++.+....+.  ...+-.+|+...-.+++..+...+.++.
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            455666666666777777777766666533332  2234555666666666666666666554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.90  E-value=0.93  Score=41.28  Aligned_cols=58  Identities=16%  Similarity=0.305  Sum_probs=27.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHh
Q 043068          160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDV  219 (526)
Q Consensus       160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  219 (526)
                      ++..++..+...|+++.+.+.++++....  |-+...|..++.+|.+.|+...|+..++.
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~  212 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQ  212 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            33444444444455555555555554444  44444555555555555554444444443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=92.82  E-value=12  Score=37.72  Aligned_cols=113  Identities=10%  Similarity=0.024  Sum_probs=80.3

Q ss_pred             hHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCC---CCHHHHHHHHHH-HHcCCCHHHHHH
Q 043068           69 YHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNK---LSDFFISKLIKA-YGDRGNVKAAIF  144 (526)
Q Consensus        69 ~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~-~~~~g~~~~A~~  144 (526)
                      +.+...++..+...|      ....-|...++.-.+-|..+.+..+|+++..   .+...|...... ....|+.+...+
T Consensus        62 ~~~r~~y~~fL~kyP------l~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~  135 (577)
T KOG1258|consen   62 DALREVYDIFLSKYP------LCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRD  135 (577)
T ss_pred             HHHHHHHHHHHhhCc------cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHH
Confidence            444455665554433      3344488888888899999999999998763   344455444443 345789999999


Q ss_pred             HHHHHHhcCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043068          145 WFHQAKQIENG--ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKE  187 (526)
Q Consensus       145 ~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  187 (526)
                      .|+.++..-..  .+...|...|..-...+++.....+|+++++.
T Consensus       136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei  180 (577)
T KOG1258|consen  136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI  180 (577)
T ss_pred             HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            99988753311  23567888888888889999999999999864

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=92.78  E-value=0.18  Score=29.28  Aligned_cols=32  Identities=22%  Similarity=0.438  Sum_probs=20.1

Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHH
Q 043068          181 FHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAK  214 (526)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  214 (526)
                      |++.++..  |.|..+|+.+...|...|++++|+
T Consensus         2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            34444544  666667777777777777766664

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.69  E-value=14  Score=38.37  Aligned_cols=146  Identities=8%  Similarity=-0.023  Sum_probs=79.9

Q ss_pred             HHHHHhCCCHHHHHHHHHhcCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 043068           99 TDVLLSHSLISIAASLLKNSNKLS-----DFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNS  173 (526)
Q Consensus        99 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  173 (526)
                      ++.+.+.+.+++|..+.+......     ......+|..+...|++++|-...-.|..    -+...|...+..+...++
T Consensus       363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~  438 (846)
T KOG2066|consen  363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ  438 (846)
T ss_pred             HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence            566777888888888887654322     23566777777788888888777766653    335555555555555554


Q ss_pred             hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCC-------------------CCCCHHHHHHHHH
Q 043068          174 IKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMT-------------------VKPNLLAYNTMIN  234 (526)
Q Consensus       174 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------------------~~p~~~~~~~li~  234 (526)
                      .....   .-+.... -..+...|..++..+.. .+...-.++..+-+                   ...+...-..|+.
T Consensus       439 l~~Ia---~~lPt~~-~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~  513 (846)
T KOG2066|consen  439 LTDIA---PYLPTGP-PRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAH  513 (846)
T ss_pred             cchhh---ccCCCCC-cccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHH
Confidence            43222   2222111 11234556666655555 22222222222210                   0112223344777


Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q 043068          235 GFCKKGELEEAKKCMNEMM  253 (526)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~  253 (526)
                      .|...+++..|+.++-...
T Consensus       514 LYl~d~~Y~~Al~~ylklk  532 (846)
T KOG2066|consen  514 LYLYDNKYEKALPIYLKLQ  532 (846)
T ss_pred             HHHHccChHHHHHHHHhcc
Confidence            7777788888877776655

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=92.68  E-value=18  Score=39.58  Aligned_cols=154  Identities=18%  Similarity=0.175  Sum_probs=84.3

Q ss_pred             CChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHHcCCHHHHHHH
Q 043068          208 GMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMI----YGLCINGRVDEAKML  283 (526)
Q Consensus       208 g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li----~~~~~~g~~~~a~~~  283 (526)
                      +++++|+.-+.+++    ...|.-.++.--+.|.+++|+.++        .|+...+..+.    ..+.....+++|.-.
T Consensus       894 ~ry~~AL~hLs~~~----~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~  961 (1265)
T KOG1920|consen  894 KRYEDALSHLSECG----ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALM  961 (1265)
T ss_pred             HHHHHHHHHHHHcC----ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            44555555555543    112222333333445555555544        34544444433    344456667777666


Q ss_pred             HHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043068          284 MAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVK--SYEVVINGFCKIGKSDEAISLLKEMRARG  361 (526)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~  361 (526)
                      |+..-+.         .-.+.+|..+|++.+|+.+..++....   +..  +-..|+.-+...+++-+|-++..+.... 
T Consensus       962 Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd- 1028 (1265)
T KOG1920|consen  962 YERCGKL---------EKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYLSD- 1028 (1265)
T ss_pred             HHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-
Confidence            6654221         124566777788888877777664321   222  2256677777788888888777766542 


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q 043068          362 LKPTVFSFNAVFRILVENGELDRAILLLKQMP  393 (526)
Q Consensus       362 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~  393 (526)
                        |     ...+..|++...+++|..+-....
T Consensus      1029 --~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1029 --P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred             --H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence              1     233445566667777777665544

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.66  E-value=5.3  Score=33.37  Aligned_cols=30  Identities=23%  Similarity=0.459  Sum_probs=15.0

Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 043068          318 YLRNVMEANMNPDVKSYEVVINGFCKIGKS  347 (526)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  347 (526)
                      .++.+.+.++.|+...+..+++.+.+.|++
T Consensus        16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~   45 (167)
T PF07035_consen   16 YIRSLNQHNIPVQHELYELLIDLLIRNGQF   45 (167)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence            334444445555555555555555555543

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=92.01  E-value=14  Score=36.57  Aligned_cols=176  Identities=13%  Similarity=0.129  Sum_probs=103.4

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 043068          121 LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTM  200 (526)
Q Consensus       121 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  200 (526)
                      +++.-.-+++..++......-...+..+|...|  .+-..|-.++..|... ..++-..+++++++..  -.|++.-..|
T Consensus        64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReL  138 (711)
T COG1747          64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGREL  138 (711)
T ss_pred             ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHH
Confidence            344445567777777777777777777777666  5666777777777776 5566667777777664  3344445555


Q ss_pred             HHHHHHcCChhhHHHHHHhC--CCCC---C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 043068          201 IRGYCKMGMIENAKKVFDVM--TVKP---N---LLAYNTMINGFCKKGELEEAKKCMNEMMNR-GCRPNELTYNAMIYGL  271 (526)
Q Consensus       201 i~~~~~~g~~~~A~~~~~~~--~~~p---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~  271 (526)
                      +.-|-+ ++.+++..+|.++  .+-|   +   ...|.-+...-  ..+.+..+.+..+.... |..--...+.-+-.-|
T Consensus       139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y  215 (711)
T COG1747         139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY  215 (711)
T ss_pred             HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence            555544 6777777777665  1111   1   11344333311  34556666666555443 3333445555566667


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043068          272 CINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKG  305 (526)
Q Consensus       272 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  305 (526)
                      ....++++|++++..+.+.. ..|......++..
T Consensus       216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~  248 (711)
T COG1747         216 SENENWTEAIRILKHILEHD-EKDVWARKEIIEN  248 (711)
T ss_pred             ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence            77777788887777766654 3444444444443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.58  E-value=4.7  Score=34.32  Aligned_cols=94  Identities=11%  Similarity=0.112  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CCH----HH
Q 043068          298 THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPD--VKSYEVVINGFCKIGKSDEAISLLKEMRARGLK---PTV----FS  368 (526)
Q Consensus       298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p~~----~~  368 (526)
                      .+..+...|++.|+.+.|++.|.++.+....+.  ...+-.+|......+++..+...+.+....--.   ++.    ..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            344555666666666666666666555432222  223445555555566666666555554332111   111    11


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHcc
Q 043068          369 FNAVFRILVENGELDRAILLLKQMP  393 (526)
Q Consensus       369 ~~~li~~~~~~g~~~~a~~~~~~~~  393 (526)
                      |..+  .+...+++.+|-+.|-+..
T Consensus       118 ~~gL--~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  118 YEGL--ANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHH--HHHHhchHHHHHHHHHccC
Confidence            2222  2234566776666665554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=91.55  E-value=20  Score=37.58  Aligned_cols=407  Identities=12%  Similarity=0.136  Sum_probs=206.4

Q ss_pred             HHHHHHHH-hcCChhHHHHHHHHhcCCCCCCCCCcC-ChhhHHHHHHHHHhCCCHHHHHHHHHhcC------CCCHH--H
Q 043068           56 NIVTKVIY-EQTNPYHALFFFNWASNPNPNPNKYHH-TTPCYTAITDVLLSHSLISIAASLLKNSN------KLSDF--F  125 (526)
Q Consensus        56 ~~l~~~l~-~~~~~~~Al~~f~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~--~  125 (526)
                      -.++++|. ...+.+.|...++++...... ..+.. -..+...+++++.+.+... |...+++..      .....  .
T Consensus        63 l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~  140 (608)
T PF10345_consen   63 LRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA  140 (608)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence            35666666 478899999999988654322 12221 1234556677777777666 888777533      12222  3


Q ss_pred             HHHH-HHHHHcCCCHHHHHHHHHHHHhcC---CCCChhhHHHHHHHHH--hcCChhHHHHHHHHHHHcCC--------CC
Q 043068          126 ISKL-IKAYGDRGNVKAAIFWFHQAKQIE---NGACLYSYNSLLGVLV--RVNSIKLAEEFFHQIVKENV--------VP  191 (526)
Q Consensus       126 ~~~l-i~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~--------~~  191 (526)
                      |..+ +..+...+++..|++.++......   ..+-+.++-.++.+..  +.+..+++.+..+++.....        -+
T Consensus       141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~  220 (608)
T PF10345_consen  141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI  220 (608)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence            3333 333334489999999998876533   2233555555555544  34556777777776633210        13


Q ss_pred             CCHHHHHHHHHHHHH--cCChhhHHHHHHhC-------CCCC--------------------------CHHHH-------
Q 043068          192 PDVSTYTTMIRGYCK--MGMIENAKKVFDVM-------TVKP--------------------------NLLAY-------  229 (526)
Q Consensus       192 ~~~~~~~~li~~~~~--~g~~~~A~~~~~~~-------~~~p--------------------------~~~~~-------  229 (526)
                      |-..+|..+++.++.  .|+++.+.+.++++       ...+                          ....|       
T Consensus       221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~  300 (608)
T PF10345_consen  221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELY  300 (608)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHH
Confidence            456778777777654  67766776666554       1111                          11111       


Q ss_pred             --HHHHHH--HHhcCCHHHHHHHHHHHHHc--------CCCCC--------HHHHHHHHH---------HHHHcCCHHHH
Q 043068          230 --NTMING--FCKKGELEEAKKCMNEMMNR--------GCRPN--------ELTYNAMIY---------GLCINGRVDEA  280 (526)
Q Consensus       230 --~~li~~--~~~~g~~~~A~~~~~~m~~~--------g~~p~--------~~~~~~li~---------~~~~~g~~~~a  280 (526)
                        .-++.+  .+..+..++|.+++++..+.        ...+.        ...|...+.         ..+-.+++..|
T Consensus       301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a  380 (608)
T PF10345_consen  301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA  380 (608)
T ss_pred             HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence              112222  23345554665555543221        11111        111222222         22446889999


Q ss_pred             HHHHHHHHHcCC-CCC-------HHhHHHHHHHHHHcCCHHHHHHHHH--------HHHHcCCCCCHHHHHHH----HHH
Q 043068          281 KMLMAKMRLNGF-KDN-------VSTHKSMLKGLCVVGKFDQAVGYLR--------NVMEANMNPDVKSYEVV----ING  340 (526)
Q Consensus       281 ~~~~~~~~~~~~-~~~-------~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l----i~~  340 (526)
                      ...++.+.+..- .|+       +.++....-.+...|+.+.|+..|.        .....+...+...+..+    |.-
T Consensus       381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~  460 (608)
T PF10345_consen  381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQ  460 (608)
T ss_pred             HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhH
Confidence            999998875321 111       2233333334456799999999997        44444444444333221    112


Q ss_pred             HHhcCChhH--HHHHHHHHHHC-CCCC--CHHHHHHH-HHHHHHcCC--HHHHHHHHHHcc-----cCCCCcCHHHHHHH
Q 043068          341 FCKIGKSDE--AISLLKEMRAR-GLKP--TVFSFNAV-FRILVENGE--LDRAILLLKQMP-----QMDCLPNFVSYNTI  407 (526)
Q Consensus       341 ~~~~g~~~~--A~~~~~~m~~~-~~~p--~~~~~~~l-i~~~~~~g~--~~~a~~~~~~~~-----~~~~~p~~~~~~~l  407 (526)
                      +......++  +.++++.+... .-.|  +..++..+ +.++.....  ..++...+.+..     +.+..--....-.+
T Consensus       461 ~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~l  540 (608)
T PF10345_consen  461 YESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNL  540 (608)
T ss_pred             hhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence            222223333  67777766542 1122  22333333 333332211  123333333222     11111111112223


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHCCCC-C--CHHHHHH-----HHHHHHhCCCHHHHHHHHHHHHH
Q 043068          408 ICGLCMAKGRMQDVEDLVDRMIRSGHN-L--DFTMYSC-----LLKGYCEEGNVENVMQIAHEMVT  465 (526)
Q Consensus       408 l~~~~~~~g~~~~a~~~~~~~~~~~~~-p--~~~~~~~-----l~~~~~~~g~~~~a~~~~~~m~~  465 (526)
                      +....- .|+..+..+........-.+ |  ....|..     +...|...|+.++|.....+...
T Consensus       541 m~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~  605 (608)
T PF10345_consen  541 MGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR  605 (608)
T ss_pred             HHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            333233 37887766665543332111 2  3445633     34457778999999998876643

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.41  E-value=0.51  Score=27.75  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=10.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHH
Q 043068          229 YNTMINGFCKKGELEEAKKCMNE  251 (526)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~~  251 (526)
                      |..|...|.+.|++++|+++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444555555555555555544

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.83  E-value=8.6  Score=32.08  Aligned_cols=135  Identities=11%  Similarity=0.240  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHH-HHHHHHH
Q 043068          332 KSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVF-SFNAVFRILVENGELDRAILLLKQMPQMDCLPNFV-SYNTIIC  409 (526)
Q Consensus       332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~  409 (526)
                      ..|...++ +.+.+..++|+.-|.++.+.|...-+. .--.......+.|+...|...|.++-...-.|-.. ....|-.
T Consensus        60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra  138 (221)
T COG4649          60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA  138 (221)
T ss_pred             HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence            34444443 356778888888888888776542111 11112234567888899999998887643333322 1222222


Q ss_pred             HH-HhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 043068          410 GL-CMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKK  467 (526)
Q Consensus       410 ~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  467 (526)
                      +| ...+|.+++...-.+-+-..+-+.....-..|.-+-.+.|++.+|.+.|+.+..-.
T Consensus       139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da  197 (221)
T COG4649         139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA  197 (221)
T ss_pred             HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence            21 22358888888888777655544455566778888889999999999998887733

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=90.52  E-value=21  Score=36.02  Aligned_cols=359  Identities=11%  Similarity=0.004  Sum_probs=184.2

Q ss_pred             cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHH-hCCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHcCC
Q 043068           65 QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLL-SHSLISIAASLLKNSN------KLSDFFISKLIKAYGDRG  137 (526)
Q Consensus        65 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~g  137 (526)
                      .|..+.+.++|++....      ++.+...|.....-+. ..+..+..++.|+++.      ..+...|...|..--..+
T Consensus        92 lg~~~~s~~Vfergv~a------ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qk  165 (577)
T KOG1258|consen   92 LGNAENSVKVFERGVQA------IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQK  165 (577)
T ss_pred             hhhHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccc
Confidence            56778899999999864      3455666666554444 4677777888888654      345567888888878889


Q ss_pred             CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---c------CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068          138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVR---V------NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG  208 (526)
Q Consensus       138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  208 (526)
                      ++.....+|++.++..    ..-|+.....|.+   .      ...+++.++-....++              ......+
T Consensus       166 s~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~--------------~~~~~~~  227 (577)
T KOG1258|consen  166 SWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER--------------SKITHSQ  227 (577)
T ss_pred             cHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh--------------hhccccc
Confidence            9999999999987632    3344444433332   1      1122222222111110              0000011


Q ss_pred             C-hhhHHHHHHhCC-CCCCHH-HHHH-------HHHHHHhcCCHHHHHHHHHHHHHcC---CC----CCHHHHHHHHHHH
Q 043068          209 M-IENAKKVFDVMT-VKPNLL-AYNT-------MINGFCKKGELEEAKKCMNEMMNRG---CR----PNELTYNAMIYGL  271 (526)
Q Consensus       209 ~-~~~A~~~~~~~~-~~p~~~-~~~~-------li~~~~~~g~~~~A~~~~~~m~~~g---~~----p~~~~~~~li~~~  271 (526)
                      . .+......+... ..+... ..+.       .-.++-......+....|++-+..-   ++    ++..+|..-+.--
T Consensus       228 ~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~  307 (577)
T KOG1258|consen  228 EPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFE  307 (577)
T ss_pred             ChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhh
Confidence            1 111111111111 011100 0111       1111222222333333333333321   11    2455677777777


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043068          272 CINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAI  351 (526)
Q Consensus       272 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  351 (526)
                      ...|+.+.+.-+|+...-- +..-...|-..+.-....|+.+-|..++....+..++-...+--.-....-..|++..|.
T Consensus       308 i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~  386 (577)
T KOG1258|consen  308 ITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK  386 (577)
T ss_pred             hhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence            7788888888887776421 111223444444444555777777777666555433322222222222334457888888


Q ss_pred             HHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHH---HHHHHcccCCCCcCH--HHHHHHHHHHHhcCCCHHHHHHHH
Q 043068          352 SLLKEMRARGLKPTVFS-FNAVFRILVENGELDRAI---LLLKQMPQMDCLPNF--VSYNTIICGLCMAKGRMQDVEDLV  425 (526)
Q Consensus       352 ~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~---~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~g~~~~a~~~~  425 (526)
                      .+++.+.+.-  |+..- -..-+....+.|+.+.+.   +++....+....+..  ..+.-...--..-.++.+.|..++
T Consensus       387 ~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l  464 (577)
T KOG1258|consen  387 VILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIIL  464 (577)
T ss_pred             HHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            8888887762  44321 122234455677777776   444443332111111  111111111112237888888888


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhCC
Q 043068          426 DRMIRSGHNLDFTMYSCLLKGYCEEG  451 (526)
Q Consensus       426 ~~~~~~~~~p~~~~~~~l~~~~~~~g  451 (526)
                      .++.+. .+++...|..+++.....+
T Consensus       465 ~~~~~~-~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  465 LEANDI-LPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHhhhc-CCccHHHHHHHHHHHHhCC
Confidence            888875 4557777888777766554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=90.41  E-value=0.49  Score=26.86  Aligned_cols=30  Identities=10%  Similarity=0.268  Sum_probs=24.0

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 043068          440 YSCLLKGYCEEGNVENVMQIAHEMVTKKGR  469 (526)
Q Consensus       440 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  469 (526)
                      +-.+..++.+.|++++|.+.|+++++..|+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            445677888889999999999998888763

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.23  E-value=5.6  Score=33.99  Aligned_cols=90  Identities=16%  Similarity=0.206  Sum_probs=51.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHc
Q 043068          235 GFCKKGELEEAKKCMNEMMNRGCRPN-----ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV  309 (526)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  309 (526)
                      -+.+.|++++|..-|.+.+.. +++.     ...|..-..++.+.+.++.|+.-..+.++.+ +........-..+|.+.
T Consensus       104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM  181 (271)
T ss_pred             HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence            345567777777777666655 2211     2234444455666677777766666666554 22333333445566666


Q ss_pred             CCHHHHHHHHHHHHHcC
Q 043068          310 GKFDQAVGYLRNVMEAN  326 (526)
Q Consensus       310 g~~~~A~~~~~~~~~~~  326 (526)
                      ..++.|+.-|+++.+..
T Consensus       182 ek~eealeDyKki~E~d  198 (271)
T KOG4234|consen  182 EKYEEALEDYKKILESD  198 (271)
T ss_pred             hhHHHHHHHHHHHHHhC
Confidence            77777777777776653

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.09  E-value=5.2  Score=36.71  Aligned_cols=101  Identities=14%  Similarity=0.124  Sum_probs=52.3

Q ss_pred             CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 043068          292 FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN---MNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFS  368 (526)
Q Consensus       292 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~  368 (526)
                      .+....+...++..-....+++.++..+-++...-   ..++... ...++.+ -.-++++++.++..=++.|+-||..+
T Consensus        60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~  137 (418)
T KOG4570|consen   60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT  137 (418)
T ss_pred             CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence            34444444555555555556666666555554321   0111111 1112222 22355566666666666666666666


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068          369 FNAVFRILVENGELDRAILLLKQMPQ  394 (526)
Q Consensus       369 ~~~li~~~~~~g~~~~a~~~~~~~~~  394 (526)
                      ++.+|+.+.+.+++.+|.++...|..
T Consensus       138 ~c~l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  138 FCLLMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            66666666666666666666555543

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=90.08  E-value=48  Score=39.50  Aligned_cols=150  Identities=10%  Similarity=0.033  Sum_probs=95.6

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068          128 KLIKAYGDRGNVKAAIFWFHQAKQIENGA--CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC  205 (526)
Q Consensus       128 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~  205 (526)
                      .+..+-.+.+.+..|+-.++.-.....+.  ....|-.+...|...+++|....+...-..    .|+   ....+....
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~s---l~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPS---LYQQILEHE 1460 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Ccc---HHHHHHHHH
Confidence            45556667888999999888741111111  123344444589999999988887764222    222   334455667


Q ss_pred             HcCChhhHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHHHHHH
Q 043068          206 KMGMIENAKKVFDVM-TVKPN-LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYN-AMIYGLCINGRVDEAKM  282 (526)
Q Consensus       206 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~~  282 (526)
                      ..|+++.|..-|+.+ +..|+ ..+++-++......|.++..+-..+-.... ..+....++ .-+.+--+.++++....
T Consensus      1461 ~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred             hhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence            789999999999998 55555 667888888888888888888766665544 122222232 23344466777777666


Q ss_pred             HHH
Q 043068          283 LMA  285 (526)
Q Consensus       283 ~~~  285 (526)
                      ...
T Consensus      1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred             hhh
Confidence            654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=89.59  E-value=11  Score=31.22  Aligned_cols=14  Identities=36%  Similarity=0.688  Sum_probs=5.4

Q ss_pred             cCCHHHHHHHHHHH
Q 043068          309 VGKFDQAVGYLRNV  322 (526)
Q Consensus       309 ~g~~~~A~~~~~~~  322 (526)
                      .|++.+|..+|+++
T Consensus        57 r~~w~dA~rlLr~l   70 (160)
T PF09613_consen   57 RGDWDDALRLLREL   70 (160)
T ss_pred             hCCHHHHHHHHHHH
Confidence            33333333333333

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.52  E-value=1.9  Score=37.19  Aligned_cols=73  Identities=19%  Similarity=0.216  Sum_probs=52.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-----CCCCCHHHHHHHHHH
Q 043068          161 YNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-----TVKPNLLAYNTMING  235 (526)
Q Consensus       161 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~li~~  235 (526)
                      .+..++.+.+.+++++++...++-++..  |.|..+-..++..+|-.|++++|..-++-.     ...+....|..+|.+
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            3455667778888888888888887776  777778888888888888888887766654     223345566666654

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=89.43  E-value=32  Score=36.56  Aligned_cols=223  Identities=14%  Similarity=0.083  Sum_probs=119.0

Q ss_pred             HHhcCChhHHHHHHHHHHHcCCCCCCH-------HHHHHHHHH-HHHcCChhhHHHHHHhC-------CCCCCHHHHHHH
Q 043068          168 LVRVNSIKLAEEFFHQIVKENVVPPDV-------STYTTMIRG-YCKMGMIENAKKVFDVM-------TVKPNLLAYNTM  232 (526)
Q Consensus       168 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l  232 (526)
                      .....++++|..+..++...-+ +|+.       ..++.|-.. ....|++++|.++-+..       ...+.+..+..+
T Consensus       425 ~~s~~r~~ea~~li~~l~~~l~-~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~  503 (894)
T COG2909         425 LASQHRLAEAETLIARLEHFLK-APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL  503 (894)
T ss_pred             HHHccChHHHHHHHHHHHHHhC-cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence            3456889999998888765421 1111       134433322 23468888888777654       123456677888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHHcCCH--HHHHHHHHHHHHc---CCC---CCHHhH
Q 043068          233 INGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMI-----YGLCINGRV--DEAKMLMAKMRLN---GFK---DNVSTH  299 (526)
Q Consensus       233 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-----~~~~~~g~~--~~a~~~~~~~~~~---~~~---~~~~~~  299 (526)
                      ..+..-.|++++|..+..+..+..-.-+...+..+.     ..+...|+.  .+.+..|......   ..+   +-..++
T Consensus       504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r  583 (894)
T COG2909         504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR  583 (894)
T ss_pred             hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence            888888999999999887766543233433333222     234456633  2233333332221   101   122344


Q ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHH
Q 043068          300 KSMLKGLCVV-GKFDQAVGYLRNVMEANMNPDVKSY--EVVINGFCKIGKSDEAISLLKEMRARGLKPT----VFSFNAV  372 (526)
Q Consensus       300 ~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l  372 (526)
                      ..+..++.+. +...++..-++--......|-....  ..|+......|+.++|...+.++......++    ..+-...
T Consensus       584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~  663 (894)
T COG2909         584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK  663 (894)
T ss_pred             HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence            4455555541 1112222222222222222222222  3677888899999999999999876543332    1111222


Q ss_pred             HH--HHHHcCCHHHHHHHHHH
Q 043068          373 FR--ILVENGELDRAILLLKQ  391 (526)
Q Consensus       373 i~--~~~~~g~~~~a~~~~~~  391 (526)
                      +.  .-...|+..++.....+
T Consensus       664 v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         664 VKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             hhHHHhcccCCHHHHHHHHHh
Confidence            22  22356888777776665

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.27  E-value=19  Score=33.60  Aligned_cols=151  Identities=12%  Similarity=0.129  Sum_probs=106.8

Q ss_pred             HHcCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHH--HHHHHHHHHcCCHH
Q 043068          205 CKMGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE--LTY--NAMIYGLCINGRVD  278 (526)
Q Consensus       205 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~--~~li~~~~~~g~~~  278 (526)
                      .-.|+..+|-..++++  ..+.|...++.-=+++.-.|+.+.-...+++.... ..+|.  .+|  ....-++...|-++
T Consensus       114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence            3467778877777776  55668888888888899999999999999988765 12232  333  33444556789999


Q ss_pred             HHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043068          279 EAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA---NMNPDVKSYEVVINGFCKIGKSDEAISLLK  355 (526)
Q Consensus       279 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  355 (526)
                      +|++.-++..+.+ +.|.....+....+--.|++.++.++..+-...   +--.-...|-...-.+...+.++.|+++|+
T Consensus       193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            9999999988776 677888888889999999999998877653321   000011123233345566689999999997


Q ss_pred             HH
Q 043068          356 EM  357 (526)
Q Consensus       356 ~m  357 (526)
                      .=
T Consensus       272 ~e  273 (491)
T KOG2610|consen  272 RE  273 (491)
T ss_pred             HH
Confidence            53

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.20  E-value=1.1  Score=27.15  Aligned_cols=31  Identities=16%  Similarity=0.336  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 043068          437 FTMYSCLLKGYCEEGNVENVMQIAHEMVTKK  467 (526)
Q Consensus       437 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  467 (526)
                      ..+++.|...|...|++++|.+++++.++..
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            3578899999999999999999999887653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.89  E-value=8.4  Score=38.71  Aligned_cols=149  Identities=15%  Similarity=0.140  Sum_probs=77.3

Q ss_pred             cCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068          207 MGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAK  286 (526)
Q Consensus       207 ~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  286 (526)
                      .|+++.|..++-.++    ...-+.++..+.+.|-.++|+++-       ..|| .-|    ....+.|+++.|.++..+
T Consensus       599 rrd~~~a~~vLp~I~----k~~rt~va~Fle~~g~~e~AL~~s-------~D~d-~rF----elal~lgrl~iA~~la~e  662 (794)
T KOG0276|consen  599 RRDLEVADGVLPTIP----KEIRTKVAHFLESQGMKEQALELS-------TDPD-QRF----ELALKLGRLDIAFDLAVE  662 (794)
T ss_pred             hccccccccccccCc----hhhhhhHHhHhhhccchHhhhhcC-------CChh-hhh----hhhhhcCcHHHHHHHHHh
Confidence            455555555443332    223334555555555555555432       1111 111    223355666666666554


Q ss_pred             HHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 043068          287 MRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV  366 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~  366 (526)
                      .      .+..-|..|.++....+++..|.+.|.....         |..|+-.+...|+.+....+-....+.|..   
T Consensus       663 ~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~---  724 (794)
T KOG0276|consen  663 A------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN---  724 (794)
T ss_pred             h------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc---
Confidence            3      3445566677777777777777666655432         445555566666665555555555544421   


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHc
Q 043068          367 FSFNAVFRILVENGELDRAILLLKQM  392 (526)
Q Consensus       367 ~~~~~li~~~~~~g~~~~a~~~~~~~  392 (526)
                         |....+|...|+++++.+++.+-
T Consensus       725 ---N~AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  725 ---NLAFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             ---chHHHHHHHcCCHHHHHHHHHhc
Confidence               22233455567777776666543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=88.80  E-value=11  Score=30.54  Aligned_cols=18  Identities=6%  Similarity=0.217  Sum_probs=7.8

Q ss_pred             HhcCChhHHHHHHHHHHH
Q 043068          169 VRVNSIKLAEEFFHQIVK  186 (526)
Q Consensus       169 ~~~g~~~~A~~~~~~~~~  186 (526)
                      ...|++++|+++|+++.+
T Consensus        55 i~rg~w~eA~rvlr~l~~   72 (153)
T TIGR02561        55 IARGNYDEAARILRELLS   72 (153)
T ss_pred             HHcCCHHHHHHHHHhhhc
Confidence            334444444444444433

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=88.55  E-value=26  Score=34.24  Aligned_cols=345  Identities=11%  Similarity=0.138  Sum_probs=155.8

Q ss_pred             HHHhCCCHHHHHHHHHhcCC---CCHH------HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH--HH
Q 043068          101 VLLSHSLISIAASLLKNSNK---LSDF------FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGV--LV  169 (526)
Q Consensus       101 ~~~~~~~~~~a~~~~~~~~~---~~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~  169 (526)
                      .+-+.++++++..+|.+...   .++.      .-+.++.+|.. .+.+.....+....+..  | ...|-.+..+  +-
T Consensus        15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y   90 (549)
T PF07079_consen   15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY   90 (549)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence            34567777777777765432   2222      22345555543 34444444444443332  2 2334444433  34


Q ss_pred             hcCChhHHHHHHHHHHHc--CCCC-----------CCHHHHHHHHHHHHHcCChhhHHHHHHhC-------CCCCCHHHH
Q 043068          170 RVNSIKLAEEFFHQIVKE--NVVP-----------PDVSTYTTMIRGYCKMGMIENAKKVFDVM-------TVKPNLLAY  229 (526)
Q Consensus       170 ~~g~~~~A~~~~~~~~~~--~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~  229 (526)
                      +.+.+++|.+.+....+.  +.-+           +|...-+..++++...|.+.++..+++++       ...-+..+|
T Consensus        91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y  170 (549)
T PF07079_consen   91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY  170 (549)
T ss_pred             HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence            567777777776666543  1111           12222334555666666666666666665       223455666


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043068          230 NTMINGFCKKGELEEAKKCMNEMMNR---GCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGL  306 (526)
Q Consensus       230 ~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  306 (526)
                      +.++-.+++        ..|-++.+.   .+-|+   |-.++-.|.+.=.      .++.-.=..+.|.......++...
T Consensus       171 d~~vlmlsr--------SYfLEl~e~~s~dl~pd---yYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhl  233 (549)
T PF07079_consen  171 DRAVLMLSR--------SYFLELKESMSSDLYPD---YYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHL  233 (549)
T ss_pred             HHHHHHHhH--------HHHHHHHHhcccccChH---HHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHH
Confidence            655544443        223333221   11121   1222222222110      000000001233333333333333


Q ss_pred             HHcC--CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHc
Q 043068          307 CVVG--KFDQAVGYLRNVMEANMNPDVK-SYEVVINGFCKIGKSDEAISLLKEMRARGLKP----TVFSFNAVFRILVEN  379 (526)
Q Consensus       307 ~~~g--~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~li~~~~~~  379 (526)
                      .-..  +..--.++++.-...-+.|+.. ....++..+.+  +.+++..+-+.+....+.+    =..+|..++....+.
T Consensus       234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~  311 (549)
T PF07079_consen  234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ  311 (549)
T ss_pred             HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            2211  1111122222222333334322 22333333433  4455544444443221111    245778888888888


Q ss_pred             CCHHHHHHHHHHcccCCCCcCHHHH-------HHHHHHHHhc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---
Q 043068          380 GELDRAILLLKQMPQMDCLPNFVSY-------NTIICGLCMA---KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKG---  446 (526)
Q Consensus       380 g~~~~a~~~~~~~~~~~~~p~~~~~-------~~ll~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~---  446 (526)
                      ++..+|.+.+.-+.-  +.|+...-       ..+-+..|..   .-+...=..+|+.....++. .-.....|+.+   
T Consensus       312 ~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~  388 (549)
T PF07079_consen  312 VQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKH  388 (549)
T ss_pred             HhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHH
Confidence            888888888877665  23443321       1222233311   12334445556666554433 22233334433   


Q ss_pred             HHhCCC-HHHHHHHHHHHHHcCCCcc
Q 043068          447 YCEEGN-VENVMQIAHEMVTKKGRLL  471 (526)
Q Consensus       447 ~~~~g~-~~~a~~~~~~m~~~~~~~~  471 (526)
                      +.+.|. -++|+++++..++-...+-
T Consensus       389 lW~~g~~dekalnLLk~il~ft~yD~  414 (549)
T PF07079_consen  389 LWEIGQCDEKALNLLKLILQFTNYDI  414 (549)
T ss_pred             HHhcCCccHHHHHHHHHHHHhccccH
Confidence            455665 7888888888877665333

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.52  E-value=5.2  Score=36.69  Aligned_cols=128  Identities=11%  Similarity=0.152  Sum_probs=77.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHH----------cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHHH
Q 043068          302 MLKGLCVVGKFDQAVGYLRNVME----------ANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARG---LKPTVFS  368 (526)
Q Consensus       302 li~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~  368 (526)
                      +.++|.....++.-....-.+-.          .|......+...++..-...++++.++..+-+++..-   ..|+. +
T Consensus        25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~  103 (418)
T KOG4570|consen   25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-T  103 (418)
T ss_pred             hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-c
Confidence            45555555555543333322221          2333344455556666566677888888877776431   11221 2


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 043068          369 FNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSG  432 (526)
Q Consensus       369 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~  432 (526)
                      -...++.|. .-+.++++.++..=+..|+.||..+++.+|+.+.+. +++.+|.++.-.|+...
T Consensus       104 ~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~-~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  104 IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKK-ENYKDAASVVTEVMMQE  165 (418)
T ss_pred             HHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhc-ccHHHHHHHHHHHHHHH
Confidence            223333333 346678888888888888888888888888888775 88888888777776553

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.49  E-value=36  Score=35.92  Aligned_cols=51  Identities=18%  Similarity=0.251  Sum_probs=32.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043068          408 ICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEM  463 (526)
Q Consensus       408 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  463 (526)
                      +..++.. .+.+.+..+.+..-   .. ++..|-.++..+.+.+..+.-.+...+.
T Consensus       712 ~~~~~q~-~d~E~~it~~~~~g---~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~v  762 (933)
T KOG2114|consen  712 MLYFQQI-SDPETVITLCERLG---KE-DPSLWLHALKYFVSEESIEDCYEIVYKV  762 (933)
T ss_pred             HHHHHHh-hChHHHHHHHHHhC---cc-ChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence            3334443 67777777766653   33 7788888888888888666555554444

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.28  E-value=0.21  Score=40.90  Aligned_cols=54  Identities=15%  Similarity=0.207  Sum_probs=27.7

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 043068          129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFH  182 (526)
Q Consensus       129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  182 (526)
                      ++..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~   66 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK   66 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence            344444555555555555555544433445555566666666555555555444

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=88.27  E-value=1  Score=25.75  Aligned_cols=31  Identities=19%  Similarity=0.204  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          438 TMYSCLLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       438 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                      .+|..+...|.+.|++++|...|++.++..+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4677788888889999999999988877654

...

>PRK09687 putative lyase; Provisional

Probab=88.15  E-value=22  Score=32.95  Aligned_cols=187  Identities=10%  Similarity=0.083  Sum_probs=79.2

Q ss_pred             CChhhHHHHHHHHHhcCCh----hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh-----hhHHHHHHhCCCCCCH
Q 043068          156 ACLYSYNSLLGVLVRVNSI----KLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMI-----ENAKKVFDVMTVKPNL  226 (526)
Q Consensus       156 ~~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~~~~~p~~  226 (526)
                      ++...-...+.+++..|+.    .++...+..+...   .++..+-...+.++...+.-     ..+...+...-..++.
T Consensus        66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~  142 (280)
T PRK09687         66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKST  142 (280)
T ss_pred             CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCH
Confidence            3444444555556666543    3455555555332   24455555555555444321     1222223222112344


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043068          227 LAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCING-RVDEAKMLMAKMRLNGFKDNVSTHKSMLKG  305 (526)
Q Consensus       227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  305 (526)
                      ..-...+.++++.|+ .+++..+-.+.+.   ++...-...+.++.+.+ ....+...+..+..   .++..+....+.+
T Consensus       143 ~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~a  215 (280)
T PRK09687        143 NVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIG  215 (280)
T ss_pred             HHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHH
Confidence            444444555555554 3444444444432   23333333333443332 12234444444332   3344445555555


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068          306 LCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA  359 (526)
Q Consensus       306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  359 (526)
                      +.+.|+ ..|+..+-+..+.+   +  .....+.++...|.. +|+..+..+.+
T Consensus       216 Lg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~  262 (280)
T PRK09687        216 LALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY  262 (280)
T ss_pred             HHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence            555555 23444333333332   1  122344455555553 45555555544

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=87.96  E-value=30  Score=34.33  Aligned_cols=165  Identities=13%  Similarity=0.143  Sum_probs=96.0

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 043068          224 PNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSML  303 (526)
Q Consensus       224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li  303 (526)
                      -|-...-+++..+..+..+.-.+.+..+|..-|  -+-..|..++.+|... ..++-..+++++.+..+ .|++.-..++
T Consensus        64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa  139 (711)
T COG1747          64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA  139 (711)
T ss_pred             ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence            355556677777777777777777777777764  2556677777777776 45666777777766542 3344444455


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 043068          304 KGLCVVGKFDQAVGYLRNVMEANMNP--D---VKSYEVVINGFCKIGKSDEAISLLKEMRAR-GLKPTVFSFNAVFRILV  377 (526)
Q Consensus       304 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~  377 (526)
                      ..|-+ ++...+...|.++...-++.  +   -..|..+...-  ..+.+....+..++... |...-.+.+.-+-.-|.
T Consensus       140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys  216 (711)
T COG1747         140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS  216 (711)
T ss_pred             HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence            54444 66777777777766542221  0   11343333211  23555566666555433 33333444555555666


Q ss_pred             HcCCHHHHHHHHHHcccC
Q 043068          378 ENGELDRAILLLKQMPQM  395 (526)
Q Consensus       378 ~~g~~~~a~~~~~~~~~~  395 (526)
                      ...++++|++++..+.++
T Consensus       217 ~~eN~~eai~Ilk~il~~  234 (711)
T COG1747         217 ENENWTEAIRILKHILEH  234 (711)
T ss_pred             cccCHHHHHHHHHHHhhh
Confidence            677777777777766664

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=87.81  E-value=24  Score=32.98  Aligned_cols=140  Identities=14%  Similarity=0.199  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----ChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCCH
Q 043068          312 FDQAVGYLRNVMEANMNPDVKSYEVVINGFCK--IG----KSDEAISLLKEMRARGL---KPTVFSFNAVFRILVENGEL  382 (526)
Q Consensus       312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~  382 (526)
                      +++...+++.+.+.|+.-+..+|-+.......  ..    ...+|..+|+.|++...   .++..++..++..  ..+++
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34555677777777777666555443322222  22    24477888888877632   2344556555443  33333


Q ss_pred             ----HHHHHHHHHcccCCCCcCHH-HHHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 043068          383 ----DRAILLLKQMPQMDCLPNFV-SYNTIICGLCMAKGR--MQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNV  453 (526)
Q Consensus       383 ----~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  453 (526)
                          +.+..+|+.+.+.|+..+.. .+.+-+-+++.....  ...+.++++.+.+.|+++....|..++-...-.+..
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~  233 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPE  233 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCch
Confidence                45566677777666654432 233333344432122  346778888888888887777777665544333333

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=87.79  E-value=48  Score=36.56  Aligned_cols=110  Identities=13%  Similarity=0.174  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHH--HHHHHHHH
Q 043068          333 SYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFV--SYNTIICG  410 (526)
Q Consensus       333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~  410 (526)
                      .|.+..+.+.....+++|.-.|+..-+.         ...+.+|..+|+|.+|+.+..++...   .+..  +-..|..-
T Consensus       941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen  941 IYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSR 1008 (1265)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHH
Confidence            3455555666677788877777665322         34567788889999998888877642   1211  12344444


Q ss_pred             HHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043068          411 LCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEM  463 (526)
Q Consensus       411 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  463 (526)
                       +...++.-+|-++..+....        ..-.+..|++...|++|.++....
T Consensus      1009 -L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1009 -LVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             -HHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence             34458888888888777542        122344566777788888776543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.70  E-value=1.7  Score=24.88  Aligned_cols=29  Identities=21%  Similarity=0.340  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIE  153 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~  153 (526)
                      .|..+...|...|++++|+..|+++.+..
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            34455555555666666666665555443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=87.26  E-value=4.7  Score=29.85  Aligned_cols=62  Identities=13%  Similarity=0.013  Sum_probs=44.2

Q ss_pred             CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 043068          138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMI  201 (526)
Q Consensus       138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li  201 (526)
                      +.=++.+.++.+...+.-|++....+.+++|.+.+++..|.++|+.++.+-  ..+...|..++
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~--~~~~~~y~~~l   83 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC--GAHKEIYPYIL   83 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cCchhhHHHHH
Confidence            344566777777777777888888888888888888888888888776442  22444565554

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=87.18  E-value=75  Score=38.08  Aligned_cols=157  Identities=8%  Similarity=0.081  Sum_probs=95.9

Q ss_pred             CChHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHh-cCCCCHHHHHHHHH
Q 043068           53 LGSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKN-SNKLSDFFISKLIK  131 (526)
Q Consensus        53 ~~~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~li~  131 (526)
                      +....+..+-.+-+.+.+|+-.++.-. ..+  .........|..+-..|..-++++....+... ...+  . +..-|-
T Consensus      1384 iP~~tLa~aSfrc~~y~RalmylEs~~-~~e--k~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~--s-l~~qil 1457 (2382)
T KOG0890|consen 1384 IPSDTLARASFRCKAYARALMYLESHR-STE--KEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP--S-LYQQIL 1457 (2382)
T ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHhc-ccc--chhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc--c-HHHHHH
Confidence            344566666677788888888888741 111  01111122344444578888888877777663 2222  2 223444


Q ss_pred             HHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHH-HHHHHHcCCh
Q 043068          132 AYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTM-IRGYCKMGMI  210 (526)
Q Consensus       132 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~  210 (526)
                      .....|+++.|...|+.+.+.++ +....++.++......|.++..+-..+......  .+....++.+ +.+--+.+++
T Consensus      1458 ~~e~~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~--se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR--SEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred             HHHhhccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhcc--CHHHHHHHHHHHHHHhhhcch
Confidence            55678899999999998887773 336777777777777788887777666655443  3333333332 3444667777


Q ss_pred             hhHHHHHH
Q 043068          211 ENAKKVFD  218 (526)
Q Consensus       211 ~~A~~~~~  218 (526)
                      +.......
T Consensus      1535 D~~e~~l~ 1542 (2382)
T KOG0890|consen 1535 DLLESYLS 1542 (2382)
T ss_pred             hhhhhhhh
Confidence            77766655

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=87.08  E-value=3.3  Score=30.95  Aligned_cols=54  Identities=7%  Similarity=0.047  Sum_probs=39.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc
Q 043068          417 RMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRL  470 (526)
Q Consensus       417 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~  470 (526)
                      +.-+..+-++.+......|++.+..+.+++|.+..++..|.++++-+..+-...
T Consensus        25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~   78 (108)
T PF02284_consen   25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK   78 (108)
T ss_dssp             -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh
Confidence            444666777777777888999999999999999999999999999888777644

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PRK12798 chemotaxis protein; Reviewed

Probab=86.99  E-value=31  Score=33.43  Aligned_cols=138  Identities=15%  Similarity=0.063  Sum_probs=93.0

Q ss_pred             cCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhCCCHH
Q 043068          379 NGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLD----FTMYSCLLKGYCEEGNVE  454 (526)
Q Consensus       379 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~  454 (526)
                      .|+.+++.+.+..+......+...-|-.|+.+-.....+..+|+++++...-.  .|.    .....--+-...+.|+.+
T Consensus       125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~  202 (421)
T PRK12798        125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD  202 (421)
T ss_pred             cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence            58888899988888876677777778888777666667888999998877642  333    233444455667889999


Q ss_pred             HHHHHHHHHHHcCCCccchhhhHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHHHHhcCCc
Q 043068          455 NVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTG-------GSWISRFVFVHQVVVIMERTVEDGKR  518 (526)
Q Consensus       455 ~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~g~~  518 (526)
                      ++..+-.+...+....|-..||...++..........+       -+.++......-.+.+-++++.+|+.
T Consensus       203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~  273 (421)
T PRK12798        203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKT  273 (421)
T ss_pred             HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcH
Confidence            99999888888888888888888877777765531111       12222333333344555555566654

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=86.98  E-value=3.6  Score=30.44  Aligned_cols=52  Identities=8%  Similarity=0.059  Sum_probs=43.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          417 RMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       417 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                      +.-++.+-++.+......|++.+..+-+++|.+..|+.-|.++++-...+..
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~   73 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG   73 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence            4556777777887788889999999999999999999999999988876655

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=86.77  E-value=3.1  Score=38.47  Aligned_cols=51  Identities=18%  Similarity=0.074  Sum_probs=25.9

Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 043068          340 GFCKIGKSDEAISLLKEMRARGLKP-TVFSFNAVFRILVENGELDRAILLLKQM  392 (526)
Q Consensus       340 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~  392 (526)
                      .|.++|.+++|+..|......  .| +.+++..-..+|.+...+..|..=....
T Consensus       106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A  157 (536)
T KOG4648|consen  106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAA  157 (536)
T ss_pred             hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence            355555555555555544432  33 4555555555555555555444433333

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.29  E-value=2.2  Score=24.23  Aligned_cols=28  Identities=32%  Similarity=0.401  Sum_probs=14.3

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 043068          126 ISKLIKAYGDRGNVKAAIFWFHQAKQIE  153 (526)
Q Consensus       126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~  153 (526)
                      +..+...|...|++++|++.|++.....
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            3445555555555555555555554433

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.19  E-value=8.4  Score=33.13  Aligned_cols=79  Identities=14%  Similarity=0.087  Sum_probs=58.2

Q ss_pred             HHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhCCC
Q 043068          376 LVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS---GHNLDFTMYSCLLKGYCEEGN  452 (526)
Q Consensus       376 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~  452 (526)
                      ..+.|+ ++|.+.|-.+...+.--++.....+. .|+.. .+.+++..++-+.++.   +-.+|+..+.+|+..|.+.|+
T Consensus       117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~  193 (203)
T PF11207_consen  117 WSRFGD-QEALRRFLQLEGTPELETAELQYALA-TYYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN  193 (203)
T ss_pred             hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence            344455 67788888888776555555555555 44444 7899999999888775   336788999999999999999


Q ss_pred             HHHHH
Q 043068          453 VENVM  457 (526)
Q Consensus       453 ~~~a~  457 (526)
                      ++.|-
T Consensus       194 ~e~AY  198 (203)
T PF11207_consen  194 YEQAY  198 (203)
T ss_pred             hhhhh
Confidence            98874

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=86.14  E-value=12  Score=32.98  Aligned_cols=114  Identities=12%  Similarity=0.064  Sum_probs=61.2

Q ss_pred             cCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHH
Q 043068          344 IGKSDEAISLLKEMRARGLKPTV-FSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVE  422 (526)
Q Consensus       344 ~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~  422 (526)
                      ...+..|+..|.+.+..  .|+. ..|..=+.++.+..+++.+..=-.+.++  +.||.+.-...+.........+++|.
T Consensus        23 ~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI   98 (284)
T KOG4642|consen   23 PKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAI   98 (284)
T ss_pred             hhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHH
Confidence            34555566655444433  4555 3344455556666666666555555554  44666655555554444445666666


Q ss_pred             HHHHHHHH----CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 043068          423 DLVDRMIR----SGHNLDFTMYSCLLKGYCEEGNVENVMQIAH  461 (526)
Q Consensus       423 ~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  461 (526)
                      ..+.+...    ..+++-..++..|..+=.+.=...+..++.+
T Consensus        99 ~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q  141 (284)
T KOG4642|consen   99 KVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ  141 (284)
T ss_pred             HHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence            66665532    2344555566666655544444455555443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=86.03  E-value=8.1  Score=33.06  Aligned_cols=90  Identities=11%  Similarity=0.121  Sum_probs=51.4

Q ss_pred             HHHcCCHHHHHHHHHHcccCCCCcCH------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043068          376 LVENGELDRAILLLKQMPQMDCLPNF------VSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCE  449 (526)
Q Consensus       376 ~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  449 (526)
                      +.+.|++++|..-|...++.-  |..      ..|..-..++.+. +.++.|..-..+.++.++. ......--..+|.+
T Consensus       105 ~F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl-~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek  180 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKL-RKWESAIEDCSKAIELNPT-YEKALERRAEAYEK  180 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHh-hhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence            345566666666666665531  221      1222222233343 6777777777777765443 22333333456777


Q ss_pred             CCCHHHHHHHHHHHHHcCCC
Q 043068          450 EGNVENVMQIAHEMVTKKGR  469 (526)
Q Consensus       450 ~g~~~~a~~~~~~m~~~~~~  469 (526)
                      ...+++|+.-|+++++..|.
T Consensus       181 ~ek~eealeDyKki~E~dPs  200 (271)
T KOG4234|consen  181 MEKYEEALEDYKKILESDPS  200 (271)
T ss_pred             hhhHHHHHHHHHHHHHhCcc
Confidence            77788888888888877764

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=85.95  E-value=3  Score=38.64  Aligned_cols=51  Identities=20%  Similarity=0.238  Sum_probs=24.0

Q ss_pred             HHHHHcCChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043068          202 RGYCKMGMIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKCMNEM  252 (526)
Q Consensus       202 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m  252 (526)
                      +-|.+.|.+++|+..+... ...| |.+++..-..+|.+...+..|+.-.+..
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A  157 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAA  157 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence            3344555555555555442 3333 4445555555555555554444444333

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=85.81  E-value=9.6  Score=32.10  Aligned_cols=41  Identities=17%  Similarity=0.270  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068          242 LEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLN  290 (526)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  290 (526)
                      +++|.+.|++..+.  .|+...|..-+....      +|-+++.++.+.
T Consensus        96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~  136 (186)
T PF06552_consen   96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ  136 (186)
T ss_dssp             HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence            34444444444443  566666666655542      344555555444

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=85.40  E-value=9.1  Score=32.94  Aligned_cols=21  Identities=24%  Similarity=0.202  Sum_probs=8.7

Q ss_pred             CHHhHHHHHHHHHHcCCHHHH
Q 043068          295 NVSTHKSMLKGLCVVGKFDQA  315 (526)
Q Consensus       295 ~~~~~~~li~~~~~~g~~~~A  315 (526)
                      |+..+.+|++.+.+.|+++.|
T Consensus       177 n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  177 NPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             CHHHHHHHHHHHHHhcchhhh
Confidence            334444444444444444433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=84.68  E-value=2.7  Score=25.23  Aligned_cols=26  Identities=31%  Similarity=0.521  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMM  253 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~  253 (526)
                      +++.+...|...|++++|+.++++..
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            45555555555555555555555544

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.43  E-value=55  Score=35.41  Aligned_cols=116  Identities=12%  Similarity=0.076  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCCHHhHH--
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRG---CRPNELTYNAMIYGLCINGRV--DEAKMLMAKMRLNGFKDNVSTHK--  300 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~--  300 (526)
                      -|..|+..|...|..++|+++|.+..+.-   ..--...+..+++...+.+..  +-++++-....+........+++  
T Consensus       506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~  585 (877)
T KOG2063|consen  506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE  585 (877)
T ss_pred             cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence            37788888888888888888888887631   000112233344444444443  44444443333221111111111  


Q ss_pred             ----------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043068          301 ----------SMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCK  343 (526)
Q Consensus       301 ----------~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~  343 (526)
                                .-+-.|.+....+-+..+++.+....-.++....+.++..|+.
T Consensus       586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e  638 (877)
T KOG2063|consen  586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE  638 (877)
T ss_pred             ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence                      1233455556666666777776665555566666666666553

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=84.42  E-value=5.8  Score=29.73  Aligned_cols=59  Identities=14%  Similarity=0.024  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 043068          141 AAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMI  201 (526)
Q Consensus       141 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li  201 (526)
                      +..+.++.+...+.-|++.+..+.+++|.+.+++..|.++|+.++.+-  .+....|..++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~--~~~~~~Y~~~l   86 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC--GNKKEIYPYIL   86 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--TT-TTHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cChHHHHHHHH
Confidence            566667777777777888888888888888888888888888887653  22222565554

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=84.14  E-value=24  Score=29.59  Aligned_cols=38  Identities=13%  Similarity=0.306  Sum_probs=20.6

Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHh
Q 043068          181 FHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDV  219 (526)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  219 (526)
                      .+.+.+.+ ++++...+..+++.+.+.|++....+++.-
T Consensus        17 irSl~~~~-i~~~~~L~~lli~lLi~~~~~~~L~qllq~   54 (167)
T PF07035_consen   17 IRSLNQHN-IPVQHELYELLIDLLIRNGQFSQLHQLLQY   54 (167)
T ss_pred             HHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence            33333444 556666666666666666665555544443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.08  E-value=59  Score=34.14  Aligned_cols=105  Identities=8%  Similarity=0.070  Sum_probs=71.0

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 043068          129 LIKAYGDRGNVKAAIFWFHQAKQIENG-ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKM  207 (526)
Q Consensus       129 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  207 (526)
                      =++.+.+.+.+++|+++-+.....-.. .........|..+.-.|++++|-...-.|...     +..-|...+..+...
T Consensus       362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~~f~e~  436 (846)
T KOG2066|consen  362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWELWVFKFAEL  436 (846)
T ss_pred             hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHHHhccc
Confidence            466778889999999887754332211 02456778888899999999999988888643     667788888888887


Q ss_pred             CChhhHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043068          208 GMIENAKKVFDVMTVKPNLLAYNTMINGFCK  238 (526)
Q Consensus       208 g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~  238 (526)
                      ++......++=.-+-.-+...|..++..+..
T Consensus       437 ~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  437 DQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             cccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence            7766544433222111244567777777765

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=83.74  E-value=33  Score=33.64  Aligned_cols=89  Identities=10%  Similarity=0.027  Sum_probs=51.6

Q ss_pred             HHHHHHcCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 043068          201 IRGYCKMGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVD  278 (526)
Q Consensus       201 i~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  278 (526)
                      ...+...|+++.+.+.+...  -+.....+...++....+.|++++|...-.-|+...++ ++..........-..|-++
T Consensus       330 ~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d  408 (831)
T PRK15180        330 SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFD  408 (831)
T ss_pred             HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHH
Confidence            34455667777777666555  12234445666666677777777777777766665554 3333333333344456666


Q ss_pred             HHHHHHHHHHHc
Q 043068          279 EAKMLMAKMRLN  290 (526)
Q Consensus       279 ~a~~~~~~~~~~  290 (526)
                      ++.-.++++...
T Consensus       409 ~~~~~wk~~~~~  420 (831)
T PRK15180        409 KSYHYWKRVLLL  420 (831)
T ss_pred             HHHHHHHHHhcc
Confidence            776666666543

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=83.50  E-value=23  Score=32.26  Aligned_cols=24  Identities=8%  Similarity=0.236  Sum_probs=18.6

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHH
Q 043068          441 SCLLKGYCEEGNVENVMQIAHEMV  464 (526)
Q Consensus       441 ~~l~~~~~~~g~~~~a~~~~~~m~  464 (526)
                      ..++..+.+.|.+.+|+.+...++
T Consensus       129 ~Kli~l~y~~~~YsdalalIn~ll  152 (421)
T COG5159         129 CKLIYLLYKTGKYSDALALINPLL  152 (421)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHH
Confidence            456778889999999988776654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=82.84  E-value=11  Score=30.71  Aligned_cols=51  Identities=20%  Similarity=0.378  Sum_probs=35.8

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHcccCC
Q 043068          342 CKIGKSDEAISLLKEMRARGLKPTVF---SFNAVFRILVENGELDRAILLLKQMPQMD  396 (526)
Q Consensus       342 ~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~  396 (526)
                      ...++++++..++..|.-.  .|+..   +|.  ...+...|++++|+.+|++..+.+
T Consensus        21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        21 LRSADPYDAQAMLDALRVL--RPNLKELDMFD--GWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             HhcCCHHHHHHHHHHHHHh--CCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccC
Confidence            3477888888888888754  45433   333  334677888888888888888754

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=82.32  E-value=33  Score=29.95  Aligned_cols=65  Identities=17%  Similarity=0.088  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 043068          123 DFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKEN  188 (526)
Q Consensus       123 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  188 (526)
                      +.+||.|.--+...|+++.|.+.|+...+.++.-+-...|.-| ++.-.|+++.|.+-|.+.-+.+
T Consensus        99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D  163 (297)
T COG4785          99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDD  163 (297)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcC
Confidence            3455555555555666666666666555554322222222222 1222355555555555554443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=82.12  E-value=2  Score=22.99  Aligned_cols=23  Identities=9%  Similarity=0.212  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHH
Q 043068          439 MYSCLLKGYCEEGNVENVMQIAH  461 (526)
Q Consensus       439 ~~~~l~~~~~~~g~~~~a~~~~~  461 (526)
                      ....+..++...|++++|.++++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            34566777888888888887765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=82.12  E-value=41  Score=30.85  Aligned_cols=70  Identities=10%  Similarity=0.104  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHH
Q 043068          299 HKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA-----RGLKPTVFSF  369 (526)
Q Consensus       299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~  369 (526)
                      +......|..+|.+.+|.++.+..+..+. .+...+-.++..+...|+--.|.+-++++.+     .|+..+...+
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie  356 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE  356 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence            44456677777777777777777776643 3666677777777777777777766666632     3555554433

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.52  E-value=38  Score=30.02  Aligned_cols=59  Identities=14%  Similarity=0.245  Sum_probs=31.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHcccCCCCcCHHH-------HHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 043068          372 VFRILVENGELDRAILLLKQMPQMDCLPNFVS-------YNTIICGLCMAKGRMQDVEDLVDRMIRSG  432 (526)
Q Consensus       372 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-------~~~ll~~~~~~~g~~~~a~~~~~~~~~~~  432 (526)
                      +...-+..+++.+|+++|++.....+.-+..-       +...+..+|.  .+.-.+...+++..+..
T Consensus       160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~--~D~v~a~~ALeky~~~d  225 (288)
T KOG1586|consen  160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK--ADEVNAQRALEKYQELD  225 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc--ccHHHHHHHHHHHHhcC
Confidence            33444567788888888887765433322222       2223323332  45555666666666543

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=81.29  E-value=0.77  Score=37.50  Aligned_cols=86  Identities=12%  Similarity=0.295  Sum_probs=52.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 043068          302 MLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGE  381 (526)
Q Consensus       302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  381 (526)
                      ++..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++..       +..-...++..|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence            44555566667777777777776555556677777777777777667777666611       11222455666666777


Q ss_pred             HHHHHHHHHHccc
Q 043068          382 LDRAILLLKQMPQ  394 (526)
Q Consensus       382 ~~~a~~~~~~~~~  394 (526)
                      ++++.-++.++..
T Consensus        86 ~~~a~~Ly~~~~~   98 (143)
T PF00637_consen   86 YEEAVYLYSKLGN   98 (143)
T ss_dssp             HHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHccc
Confidence            7777766666543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=80.57  E-value=46  Score=30.42  Aligned_cols=100  Identities=14%  Similarity=0.125  Sum_probs=53.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043068          365 TVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLL  444 (526)
Q Consensus       365 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~  444 (526)
                      ++.....+...|.+.|++.+|...|-.-.+    |+...+..++..+... |...++--+              .-. .+
T Consensus        89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~----~~~~~~~~ll~~~~~~-~~~~e~dlf--------------i~R-aV  148 (260)
T PF04190_consen   89 DPELHHLLAEKLWKEGNYYEAERHFLLGTD----PSAFAYVMLLEEWSTK-GYPSEADLF--------------IAR-AV  148 (260)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHTS-H----HHHHHHHHHHHHHHHH-TSS--HHHH--------------HHH-HH
T ss_pred             CHHHHHHHHHHHHhhccHHHHHHHHHhcCC----hhHHHHHHHHHHHHHh-cCCcchhHH--------------HHH-HH
Confidence            455666777888888888888876644322    3343333344333333 443333111              112 22


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHc----CC----------CccchhhhHHHHHHHH
Q 043068          445 KGYCEEGNVENVMQIAHEMVTK----KG----------RLLKLKNFLTRVVDAL  484 (526)
Q Consensus       445 ~~~~~~g~~~~a~~~~~~m~~~----~~----------~~~~~~~~~~~~~~~~  484 (526)
                      --|.-.|+...|...++...++    ++          ...+..||...++.++
T Consensus       149 L~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~  202 (260)
T PF04190_consen  149 LQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTC  202 (260)
T ss_dssp             HHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHH
Confidence            3466678888888888777766    21          2335677876666654

; PDB: 3LKU_E 2WPV_G.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=80.34  E-value=98  Score=34.09  Aligned_cols=349  Identities=11%  Similarity=0.044  Sum_probs=165.4

Q ss_pred             ChHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHH-HHHHH---hCC---CHHHHHHHHHhcCCCCHHHH
Q 043068           54 GSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAI-TDVLL---SHS---LISIAASLLKNSNKLSDFFI  126 (526)
Q Consensus        54 ~~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l-~~~~~---~~~---~~~~a~~~~~~~~~~~~~~~  126 (526)
                      +...+-.++.....+++|+.+++++....|....-   ..+-..+ +..+-   ..+   .+.+|..-|++...-.....
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (932)
T PRK13184        477 SCLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEG---YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPL  553 (932)
T ss_pred             ecccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccc---hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCch
Confidence            33456677788889999999999998776643211   1111111 11111   122   46666666665443322223


Q ss_pred             HHHH--HHHHcCCCHHHHHHHHHHHHhcCCC-CChhh-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 043068          127 SKLI--KAYGDRGNVKAAIFWFHQAKQIENG-ACLYS-YNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIR  202 (526)
Q Consensus       127 ~~li--~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~  202 (526)
                      ..|.  -.|.+.|++++=++.+.-..++-+. |-..- -..+            ..++++.....     ...+|.-++-
T Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-----~~~~~~~~~~  616 (932)
T PRK13184        554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL------------VYRLHESLYKH-----RREALVFMLL  616 (932)
T ss_pred             HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH------------HHHHHHHHHHH-----HHHHHHHHHH
Confidence            3333  3466667777776666655543321 21111 0011            11122222111     1112222222


Q ss_pred             HHHH---cCChhhHHHHHHhC--C--------CCCCHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043068          203 GYCK---MGMIENAKKVFDVM--T--------VKPNLLA-----YNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTY  264 (526)
Q Consensus       203 ~~~~---~g~~~~A~~~~~~~--~--------~~p~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  264 (526)
                      +...   .-...+-+++|+.+  .        +.+...+     +..++...  .|..---.++|++..+.   +|-.+.
T Consensus       617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~  691 (932)
T PRK13184        617 ALWIAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFW--SGFTPFLPELFQRAWDL---RDYRAL  691 (932)
T ss_pred             HHHhCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHH--hcCchhhHHHHHHHhhc---ccHHHH
Confidence            2211   11122223444443  1        1222221     22222221  34444445566666543   244566


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH--------HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 043068          265 NAMIYGLCINGRVDEAKMLMAKMRLN----GFKDNV--------STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVK  332 (526)
Q Consensus       265 ~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  332 (526)
                      ..+.-..+..|.++-+.+..+.+.+.    ..+.+.        ..|..-+.+......++++.+.+.......   -..
T Consensus       692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  768 (932)
T PRK13184        692 ADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTL---ILY  768 (932)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHH---HHH
Confidence            66666678889998888777766532    111111        112222444555556666665444322111   122


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 043068          333 SYEVVINGFCKIGKSDEAISLLKEMRARGLKPT--VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICG  410 (526)
Q Consensus       333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~  410 (526)
                      .+..++.-..-.++.+....+.+.+...-....  ......-|.+|.-..++++|-+++......-...+......|-+.
T Consensus       769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  848 (932)
T PRK13184        769 AFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGC  848 (932)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHH
Confidence            334444444445566655555555554321111  123345678888899999999999877654333333322233333


Q ss_pred             HHhcCCCHHHHHHHHHHHHH
Q 043068          411 LCMAKGRMQDVEDLVDRMIR  430 (526)
Q Consensus       411 ~~~~~g~~~~a~~~~~~~~~  430 (526)
                      +....++-+.|...|..-.+
T Consensus       849 ~~~~~~~~~~~~~~~~~~~~  868 (932)
T PRK13184        849 YLALTEDREAAKAHFSGCRE  868 (932)
T ss_pred             HHHhcCchhHHHHHHhhccc
Confidence            33334666777777766553

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=80.21  E-value=10  Score=24.69  Aligned_cols=37  Identities=11%  Similarity=0.098  Sum_probs=26.5

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhH
Q 043068          441 SCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFL  477 (526)
Q Consensus       441 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  477 (526)
                      -.+.-++.+.|++++|.+..+.+++..|.........
T Consensus         5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            3456678888999999999999988888766554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	526
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	7e-16
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	4e-14
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-13
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	4e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 80.2 bits (196), Expect = 7e-16
 Identities = 20/188 (10%), Positives = 49/188 (26%), Gaps = 7/188 (3%)

Query: 178 EEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM------TVKPNLLAYNT 231
           E+       +  +           +       +  A  +  V            L  YN 
Sbjct: 111 EQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNA 170

Query: 232 MINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEA-KMLMAKMRLN 290
           ++ G+ ++G  +E    +  + + G  P+ L+Y A +  +    +     +  + +M   
Sbjct: 171 VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230

Query: 291 GFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEA 350
           G K        +L                         P   +   ++            
Sbjct: 231 GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSY 290

Query: 351 ISLLKEMR 358
             L   ++
Sbjct: 291 PKLHLPLK 298

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 74.5 bits (181), Expect = 4e-14
 Identities = 24/192 (12%), Positives = 57/192 (29%), Gaps = 5/192 (2%)

Query: 276 RVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYL---RNVMEANMNPDVK 332
            +D  +    +              +  K   +  +   A   L       +      + 
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166

Query: 333 SYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAIL-LLKQ 391
            Y  V+ G+ + G   E + +L  ++  GL P + S+ A  + +    +    I   L+Q
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226

Query: 392 MPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEG 451
           M Q       +    ++         ++ V  +                S LL+    + 
Sbjct: 227 MSQEGLKLQALFTAVLLSE-EDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285

Query: 452 NVENVMQIAHEM 463
              +  ++   +
Sbjct: 286 GRVSYPKLHLPL 297

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 72.9 bits (177), Expect = 1e-13
 Identities = 36/255 (14%), Positives = 76/255 (29%), Gaps = 17/255 (6%)

Query: 238 KKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKD--- 294
            K  L+  +    +         +    A      +  ++  A  L+        K    
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163

Query: 295 NVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAIS-L 353
            +  + +++ G    G F + V  L  V +A + PD+ SY   +    +  +    I   
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223

Query: 354 LKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCM 413
           L++M   GLK        +         L     +         LP  V+ + ++     
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLL----- 278

Query: 414 AKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKL 473
                    D+  +  R  +         L   + ++ ++E   ++    V K     K 
Sbjct: 279 --------RDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKE 330

Query: 474 KNFLTRVVDALLLMW 488
                + +  L   W
Sbjct: 331 VKHARKTLKTLRDQW 345

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 62.9 bits (151), Expect = 2e-10
 Identities = 20/167 (11%), Positives = 52/167 (31%), Gaps = 8/167 (4%)

Query: 129 LIKAYGDRGNVKAA---IFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIV 185
             K       +  A   +   H  +Q      L  YN+++    R  + K        + 
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV- 191

Query: 186 KENVVPPDVSTYTTMIRGYCKMGM-IENAKKVFDVMT---VKPNLLAYNTMINGFCKKGE 241
           K+  + PD+ +Y   ++   +        ++  + M+   +K   L    +++   +   
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251

Query: 242 LEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMR 288
           L+   K           P  +  + ++  +           L   ++
Sbjct: 252 LKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 1e-09
 Identities = 87/577 (15%), Positives = 180/577 (31%), Gaps = 153/577 (26%)

Query: 4   PRRSLTN-----ISQIPDQSILVTSITSVIQRLNPQNPSPKNISSQPLDQFSLCLGSN-- 56
           P+  L+      I    D       +   +          + +  + +++    L  N  
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS------KQEEMVQKFVEE---VLRINYK 92

Query: 57  -IVTKVIYEQTNPYHALFFFNWASNPNPNPN----KYHHTTP-CYTAITDVLL---SHSL 107
            +++ +  EQ  P      +    +   N N    KY+ +    Y  +   LL       
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 108 ISI-----------AASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGA 156
           + I           A  +  +          K+      +      IFW +         
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSY---------KVQCKMDFK------IFWLNLKNCNSPET 197

Query: 157 CLYSYNSLLGVL---------------VRVNSIKLA-EEFFHQIVKEN--VVPPDVSTYT 198
            L     LL  +               +R++SI+            EN  +V  +V    
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-A 256

Query: 199 TMIRGY---CKMGMIENAKKVFDVMTV-KPNLLAYNTMINGFCKKGELEEAK----KCMN 250
                +   CK+ +    K+V D ++      ++ +            +E K    K ++
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL----TPDEVKSLLLKYLD 312

Query: 251 EMMNRGCRPNE-LTYN----AMIYGLCING--------RVDEAKMLMA-KMRLNGFKDNV 296
                   P E LT N    ++I     +G         V+  K+    +  LN  +   
Sbjct: 313 --CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA- 369

Query: 297 STHKSMLKGLCVVGKFDQAVGYLRNVMEANMN---PDVKSYEV--VINGFCKIGKSDEAI 351
             ++ M   L V   F  +     ++    ++    DV   +V  V+N   K        
Sbjct: 370 -EYRKMFDRLSV---FPPSA----HIPTILLSLIWFDVIKSDVMVVVNKLHK-------Y 414

Query: 352 SLLKEMRARGLKPTVFSFNAV---FRILVEN-GELDRAIL----LLKQMPQMDCLPNFV- 402
           SL++    +  K +  S  ++    ++ +EN   L R+I+    + K     D +P ++ 
Sbjct: 415 SLVE----KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470

Query: 403 --SYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLK----GYCEEGNVENV 456
              Y+ I  G  +      +   L   +      LDF      ++     +   G++ N 
Sbjct: 471 QYFYSHI--GHHLKNIEHPERMTLFRMVF-----LDFRFLEQKIRHDSTAWNASGSILNT 523

Query: 457 MQ--------IAHEMVTKKGRLLKLKNFLTRVVDALL 485
           +Q        I       +  +  + +FL ++ + L+
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 5e-08
 Identities = 56/311 (18%), Positives = 104/311 (33%), Gaps = 79/311 (25%)

Query: 147 HQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK 206
           H     E G   Y Y  +L V             F     +N    DV       +    
Sbjct: 4   HHHMDFETGEHQYQYKDILSV-------------FEDAFVDNFDCKDVQDMP---KS--- 44

Query: 207 MGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYN- 265
              I + +++  ++  K  +     +      K E E  +K + E++    R N   Y  
Sbjct: 45  ---ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE-EMVQKFVEEVL----RIN---YKF 93

Query: 266 --AMIYGLCINGRVDEAKMLMAKMRLNG----F-KDNVSTHKSMLKGLCVVGKFDQAVGY 318
             + I        +     +  + RL      F K NVS  +  LK              
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK-------------- 139

Query: 319 LRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVE 378
           LR  +   + P      V+I+G    GK+  A+ +    + +        F  +F + + 
Sbjct: 140 LRQALL-ELRPAKN---VLIDGVLGSGKTWVALDVCLSYKVQ----CKMDFK-IFWLNL- 189

Query: 379 NGELDRAILLLKQM----PQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHN 434
               +    +L+ +     Q+D  PN+ S +     +   K R+  ++  + R+++S   
Sbjct: 190 -KNCNSPETVLEMLQKLLYQID--PNWTSRSDHSSNI---KLRIHSIQAELRRLLKS--- 240

Query: 435 LDFTMY-SCLL 444
                Y +CLL
Sbjct: 241 ---KPYENCLL 248

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 74/504 (14%), Positives = 146/504 (28%), Gaps = 138/504 (27%)

Query: 5   RRSLTNISQIPDQSILV--------TSIT-SVIQRLNPQNPSPKNISSQPLDQFSLCLGS 55
           R++L  +   P +++L+        T +   V      Q      I       F L L +
Sbjct: 141 RQALLELR--PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-------FWLNLKN 191

Query: 56  NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLL 115
               + + E           NW S  + + N           +  +L S         LL
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENCLL 248

Query: 116 KNSNKLSDFFISKLIKAYG----------DRGNVKAAIFWFHQAKQIENGACLYSYNSLL 165
                L +   +K   A+            +               +++ +   + + + 
Sbjct: 249 V----LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 166 GVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPN 225
            +L++    +  ++   +++  N  P  +S     IR    +   +N K V        N
Sbjct: 305 SLLLKYLDCR-PQDLPREVLTTN--PRRLSIIAESIRDG--LATWDNWKHV--------N 351

Query: 226 LLAYNTMINGFCKKGELEEAKKC---------------------------------MNEM 252
                T+I       E  E +K                                  +N++
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 253 MNRG---CRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV 309
                   +P E T +  I  +           L  K++L    +  + H+S++    + 
Sbjct: 412 HKYSLVEKQPKESTIS--IPSI----------YLELKVKLE---NEYALHRSIVDHYNIP 456

Query: 310 GKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIG---KSDEAISLLKEMRARGLKPTV 366
             FD          +  + P +  Y      +  IG   K+ E    +   R   L    
Sbjct: 457 KTFDS---------DDLIPPYLDQYF-----YSHIGHHLKNIEHPERMTLFRMVFLD--- 499

Query: 367 FSFNAVFRILVENGELDRAI-----LLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDV 421
           F F            L++ I             ++ L     Y   IC       R+  V
Sbjct: 500 FRF------------LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL--V 545

Query: 422 EDLVDRMIRSGHNLDFTMYSCLLK 445
             ++D + +   NL  + Y+ LL+
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLR 569

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 49/335 (14%), Positives = 98/335 (29%), Gaps = 37/335 (11%)

Query: 75  FNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFF--ISKLIKA 132
           ++  S  +    +       Y    +       +  A   L + N L      +      
Sbjct: 260 YSTYSKEDAAFLRSL-----YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADT 314

Query: 133 YGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPP 192
              R      +    +  +I +   L  Y   L  L             + +V  +  P 
Sbjct: 315 LFVRSRFIDVLAITTKILEI-DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH--PE 371

Query: 193 DVSTYTTMIRGYCKMGMIENAKKVFD-VMTVKPNLL-AYNTMINGFCKKGELEEAKKCMN 250
              T+  +   Y  +  I  A++ F    T+ P    A+    + F  +GE ++A     
Sbjct: 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431

Query: 251 E--MMNRGCRPNELTYN--AMIYGLCINGRVDEA-KMLMAKMRLNGFKDNVSTHKSMLKG 305
               + +G     L Y    M +     G +  A + L +   L   + +      +  G
Sbjct: 432 TAARLFQGT---HLPYLFLGMQHMQ--LGNILLANEYLQSSYALF--QYDPLLLNEL--G 482

Query: 306 LCVV--GKFDQAVGYLRNVMEA---NMNPDVKSYEVVIN-GFC--KIGKSDEAISLLKEM 357
           +          A+ + +N +       + +        N G    K+   D AI  L   
Sbjct: 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN-- 540

Query: 358 RARGLKPTVFS-FNAVFRILVENGELDRAILLLKQ 391
           +   L     +   A+  + +       AI  L +
Sbjct: 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE 575

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 54/409 (13%), Positives = 127/409 (31%), Gaps = 36/409 (8%)

Query: 2   ATPRRSLTNISQIPDQSILVTSITSVIQRLNPQNPSPKNISSQPLDQFSLCLGSNIVTKV 61
            TP       +   +  +   +I+ +    N  +     +  +           + +   
Sbjct: 31  MTPPSMGALNANNSNSQLSTLTISPMTYLANNTSTDGSFLKERNAQNTDSLSREDYLRLW 90

Query: 62  IYEQTNPYH---ALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNS 118
            ++         A F      +   NPN        Y    D   +  L++      ++S
Sbjct: 91  RHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSS 150

Query: 119 N----------KLSDFF--ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLG 166
                      KL D+   ++ L +    R + K A     Q   I+  A +     L G
Sbjct: 151 ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCY---LRG 207

Query: 167 -VLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENA---KKVFDVMTV 222
            V   +++   A+E + + +  +        +  ++  +      E     K  +   + 
Sbjct: 208 QVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265

Query: 223 KPNLLA---YNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDE 279
           +        Y   +N    + EL  A+  ++ +       +          L +  R  +
Sbjct: 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE--KSSDLLLCKADTLFVRSRFID 323

Query: 280 AKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPD-VKSYEVVI 338
              +  K+ L     N+  +   L  L   G+ ++      ++++   +P+   ++  V 
Sbjct: 324 VLAITTKI-LEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAVTWLAVG 380

Query: 339 NGFCKIGKSDEAISLLKEMRARGLKPT-VFSFNAVFRILVENGELDRAI 386
             +  + K  EA       ++  + P    ++          GE D+AI
Sbjct: 381 IYYLCVNKISEARRYFS--KSSTMDPQFGPAWIGFAHSFAIEGEHDQAI 427

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 45/378 (11%), Positives = 113/378 (29%), Gaps = 63/378 (16%)

Query: 78  ASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDF-FISKLIKAYGDR 136
           A N N + ++    T           S     +     +N++ LS   ++         +
Sbjct: 38  ALNANNSNSQLSTLTISPMTYLANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQ 97

Query: 137 GNVKAAIFWFHQAKQIEN-----------------------------------------G 155
              K A F   +   I                                            
Sbjct: 98  QQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAA 157

Query: 156 ACLYS---YNSLLGVLVRVNSIKLAEEFFHQIVKENV-VPPDVSTYTTMIRGYCKMGMIE 211
            CL     +   L +L   N  +  E+  ++++ ++  +  + S      + Y  +   +
Sbjct: 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217

Query: 212 NAKKVFD-VMTVKPNLL-AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN----ELTYN 265
            AK+ +   + V      A++ +++      + EE    +    +   + +       Y 
Sbjct: 218 RAKECYKEALMVDAKCYEAFDQLVSNHLLTAD-EEWDLVLKLNYSTYSKEDAAFLRSLYM 276

Query: 266 AMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA 325
             +        +  A+  ++   +NG + +          L V  +F   +     ++E 
Sbjct: 277 LKLNKTSHEDELRRAEDYLSS--INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE- 333

Query: 326 NMNPD-VKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPT-VFSFNAVFRILVENGELD 383
            ++P  +  Y + +    + G+ ++   +  +       P    ++ AV    +   ++ 
Sbjct: 334 -IDPYNLDVYPLHLASLHESGEKNKLYLISND--LVDRHPEKAVTWLAVGIYYLCVNKIS 390

Query: 384 RAILLLKQMPQMDCLPNF 401
            A     +   MD  P F
Sbjct: 391 EARRYFSKSSTMD--PQF 406

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 32/248 (12%), Positives = 65/248 (26%), Gaps = 52/248 (20%)

Query: 191 PPDVSTYTTMIRGYCKMGMIENAKKVFD-VMTVKPNL-LAYNTMINGFCKKGELEEAKKC 248
                 Y  +  GY + G  E AK      + + P+   A+  +   F  + E + A + 
Sbjct: 34  DEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEE 93

Query: 249 MNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV 308
                          Y   +                     +    N     +    L  
Sbjct: 94  ---------------YRKAL-------------------ASD--SRNARVLNNYGGFLYE 117

Query: 309 VGKFDQAVGYLRNVMEANMNPDV-KSYEVVIN-GFC--KIGKSDEAISLLKEMRARGLKP 364
             ++++A   L    +  + P+  + +E   N G    ++ K  +A    +  ++  L  
Sbjct: 118 QKRYEEAYQRLLEASQDTLYPERSRVFE---NLGLVSLQMKKPAQAKEYFE--KSLRLNR 172

Query: 365 T-VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFV-SYNTIICGLCMAKGRMQDVE 422
                   +  +L +  E   A        Q         S    I  L           
Sbjct: 173 NQPSVALEMADLLYKEREYVPARQYYDLFAQGG--GQNARSLLLGI-RLAKVFEDRDTAA 229

Query: 423 DLVDRMIR 430
               ++ R
Sbjct: 230 SYGLQLKR 237

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 41/238 (17%), Positives = 73/238 (30%), Gaps = 48/238 (20%)

Query: 132 AYGDRGNVKAAIFWFHQAKQIE-NGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVV 190
            Y  RGN + A     +A +I+ + A   ++ +L  V       KLA+E + + +  +  
Sbjct: 46  GYLQRGNTEQAKVPLRKALEIDPSSA--DAHAALAVVFQTEMEPKLADEEYRKALASD-- 101

Query: 191 PPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMN 250
                                             N    N       ++   EEA + + 
Sbjct: 102 -SR-------------------------------NARVLNNYGGFLYEQKRYEEAYQRLL 129

Query: 251 EMMNRGCRPN-ELTYNAMIYGLCIN--GRVDEAKMLMAK-MRLNGFKDNVSTHKSMLKGL 306
           E       P     +  +  GL      +  +AK    K +RLN  ++  S    M   L
Sbjct: 130 EASQDTLYPERSRVFENL--GLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLL 185

Query: 307 CVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKP 364
               ++  A  Y     +     + +S  + I         D A S     + + L P
Sbjct: 186 YKEREYVPARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGL--QLKRLYP 240

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 30/208 (14%), Positives = 67/208 (32%), Gaps = 24/208 (11%)

Query: 191 PPDVSTYTTMIRGYCKMGMIENAKKVFD-VMTVKPNL-LAYNTMINGFCKKGELEEAKKC 248
               +  T +   Y +      A    +  +   P   LA+      +      ++A++ 
Sbjct: 5   NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64

Query: 249 MNEMMNRGCRPN--ELTYNAMIYG--LCIN-GRVDEA-KMLMAKMRLNGFKDNVSTHKSM 302
             + ++   +P+  E+  N   YG  LC    R  E+       +    +      + + 
Sbjct: 65  FRQALSI--KPDSAEINNN---YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK 119

Query: 303 LKGLCVV--GKFDQAVGYLRNVMEANMNPD-VKSYEVVINGFCKIGKSDEAISLLKEMRA 359
             G+C    G+F  A  YL+  +     P    +++ +       G+  +A    K  + 
Sbjct: 120 --GICSAKQGQFGLAEAYLKRSLA--AQPQFPPAFKELARTKMLAGQLGDADYYFK--KY 173

Query: 360 RGLKPTVF--SFNAVFRILVENGELDRA 385
           +     +        ++I    G    A
Sbjct: 174 QSRVEVLQADDLLLGWKIAKALGNAQAA 201

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 26/245 (10%), Positives = 70/245 (28%), Gaps = 29/245 (11%)

Query: 132 AYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVP 191
              DR +      +F +A ++ +      Y     +   + +   A + F +  + +  P
Sbjct: 279 IMADRNDSTEYYNYFDKALKL-DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD--P 335

Query: 192 PDVSTYTTMIRGYCKMGMIENAKKVFD-VMTVKPNL-LAYNTMINGFCKKGELEEAKKCM 249
            ++  Y  +     +    ++ + +F       P      N        K + ++A K  
Sbjct: 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395

Query: 250 NEM-----------MNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAK-MRLNGFKDNVS 297
           +             +        +    ++          EA  L+ K  +L+    +  
Sbjct: 396 DLAIELENKLDGIYVGIA---PLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSEQ 450

Query: 298 THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVING--FCKIGKSDEAISLLK 355
               + +        D+A+       +  +       E  +    F +  K  + I    
Sbjct: 451 AKIGLAQMKLQQEDIDEAITLFEESAD--LART---MEEKLQAITFAEAAKVQQRIRSDP 505

Query: 356 EMRAR 360
            +  +
Sbjct: 506 VLAKK 510

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 39/223 (17%), Positives = 83/223 (37%), Gaps = 20/223 (8%)

Query: 177 AEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFD-VMTVKPNL-LAYNTMIN 234
           AE    Q+ ++   P +      +   + +   ++ +       +   P L  AY+ + N
Sbjct: 18  AERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGN 75

Query: 235 GFCKKGELEEAKKCMNEMMNRGCRPN-ELTYNAMIYGLCINGRVDEAKMLMAK-MRLNGF 292
            + ++G+L+EA +     +    +P+    Y  +   L   G ++ A       ++ N  
Sbjct: 76  VYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-- 131

Query: 293 KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVIN-G--FCKIGKSDE 349
            D       +   L  +G+ ++A       +E    P+        N G  F   G+   
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQPN--FAVAWSNLGCVFNAQGEIWL 187

Query: 350 AISLLKEMRARGLKPT-VFSFNAVFRILVENGELDRAILLLKQ 391
           AI   +  +A  L P  + ++  +  +L E    DRA+    +
Sbjct: 188 AIHHFE--KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 28/177 (15%), Positives = 61/177 (34%), Gaps = 15/177 (8%)

Query: 109 SIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVL 168
            +   + ++ +  +  F+      Y    N  AA+   HQ         L      + +L
Sbjct: 87  ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS------LECMAMTVQIL 140

Query: 169 VRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGM--IENAKKVFDVMTVK--P 224
           ++++ + LA +   ++  ++       T           G   +++A  +F  M  K  P
Sbjct: 141 LKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP 198

Query: 225 NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNEL-TYNAMIYGLCINGRVDEA 280
            LL  N        +G  E A+  + E +++        T   ++      G+  E 
Sbjct: 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEV 253

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 36/278 (12%), Positives = 80/278 (28%), Gaps = 35/278 (12%)

Query: 132 AYGDRGNVKAAIFWFHQAKQIE-NGACLYSYNSLLG-VLVRVNSIKLAEEFFHQIVKENV 189
            +    N   AI ++  A +++ N    YS    +    +    ++   EF  + ++   
Sbjct: 34  HFFTAKNFNEAIKYYQYAIELDPNEPVFYSN---ISACYISTGDLEKVIEFTTKALEIK- 89

Query: 190 VPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCM 249
            P               +G   +A     V+++  +       I    ++   ++A K +
Sbjct: 90  -PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDF--DGASIEPMLERNLNKQAMKVL 146

Query: 250 NEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV 309
           NE +                 L  N  +              F  ++      +  +   
Sbjct: 147 NENL-------SKDEGRGSQVLPSNTSLASF--------FGIFDSHLE-----VSSVNTS 186

Query: 310 GKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCK-IGKSDEAISLLKEMRARGLKP-TVF 367
             +D A   L + ++   +   + Y V  +   K        +S         L+     
Sbjct: 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV--DDPLRENAAL 244

Query: 368 SFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYN 405
           +             L  A +LL++   +   P   SY 
Sbjct: 245 ALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYI 280

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 47/373 (12%), Positives = 95/373 (25%), Gaps = 62/373 (16%)

Query: 61  VIYEQTNPYH-ALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN 119
              E    +  A+F  +   + N + +           +    +     +++    + S 
Sbjct: 101 SANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQ 159

Query: 120 KL-SDFFISKLIKAY---------GDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLV 169
            L S+  ++     +             N   A      A Q    A    Y     +L 
Sbjct: 160 VLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLT 219

Query: 170 R-VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFD-VMTVKPNLL 227
           +  +                               +     + +A+ +    + + P   
Sbjct: 220 KSTDMYHSLLSANTVDDPLR--ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPN 277

Query: 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYG-----LCINGRVDEAKM 282
           +Y  +      K   +E  K   + ++    P         Y        I      AK 
Sbjct: 278 SYIFLALTLADKENSQEFFKFFQKAVDLN--PE----YPPTYYHRGQMYFILQDYKNAKE 331

Query: 283 LMAK-MRLNGFKDNVSTHKSM---LKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVI 338
              K   LN   +NV  +  +   L      GKF ++  +          P     EV  
Sbjct: 332 DFQKAQSLN--PENVYPYIQLACLLYKQ---GKFTESEAFFNETKL--KFPT--LPEVPT 382

Query: 339 N-G--FCKIGKSDEAISLLKEMRARGLKPT-----------------VFSFNAVFRILVE 378
                    G  D AI       A+ L+                   +   ++     ++
Sbjct: 383 FFAEILTDRGDFDTAIKQYD--IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLD 440

Query: 379 NGELDRAILLLKQ 391
             + + AI LL +
Sbjct: 441 EEKFNAAIKLLTK 453

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 26/199 (13%), Positives = 55/199 (27%), Gaps = 11/199 (5%)

Query: 96  TAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIE-N 154
            A+          ++   L      L++F+ +     +GD  ++  A     +  Q    
Sbjct: 172 KALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE 231

Query: 155 GACLYSYNSLLGVLVRVNS------IKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG 208
                +  +L+ ++           +         IV    +      Y          G
Sbjct: 232 FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG 291

Query: 209 MIENAKKVFD-VMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAM 267
             + + +  +  + ++ + L Y  +   +  KG   EA        N   RP   T    
Sbjct: 292 KTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY-W 348

Query: 268 IYGLCINGRVDEAKMLMAK 286
           I        V      + K
Sbjct: 349 IENGIFQTSVPYVVPYLDK 367

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 43/326 (13%), Positives = 104/326 (31%), Gaps = 49/326 (15%)

Query: 131 KAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVV 190
             +   G          +    ++ A +  +  L   L+    +  A   FH  V  +  
Sbjct: 4   HHHHSSGVDL-----GTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-- 56

Query: 191 PPDVSTYTTMIRG--YCKMGMIENAKKVFD-VMTVKPNLL-AYNTMINGFCKKGELEEAK 246
           P +   Y    R   +  MG  + A      V+ +K +   A     +   K+G+L+EA+
Sbjct: 57  PDNYIAYYR--RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAE 114

Query: 247 KCMN-------------EMMNRGCRPNEL-TYNAMIYGLCINGRVDEAKMLMAKMRLNGF 292
                            E  ++  + +E+    +       +G    A   + K+ L   
Sbjct: 115 DDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI-LEVC 173

Query: 293 KDNVSTHKSMLKGLC--VVGKFDQAVGYLRNVMEANMNPD-VKSYEVVINGFCKIGKSDE 349
             +       L+  C    G+  +A+  L+   +  +  D  +++  +   + ++G  + 
Sbjct: 174 VWDAELR--ELRAECFIKEGEPRKAISDLKAASK--LKNDNTEAFYKISTLYYQLGDHEL 229

Query: 350 AISLLKE-----------MRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCL 398
           ++S ++E                    +         L+ +G    A    + + + +  
Sbjct: 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-- 287

Query: 399 PNFVSYNTII-CGLCMAKGRMQDVED 423
           P+   Y       +C    + +   +
Sbjct: 288 PSIAEYTVRSKERICHCFSKDEKPVE 313

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 25/161 (15%), Positives = 62/161 (38%), Gaps = 10/161 (6%)

Query: 132 AYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLG-VLVRVNSIKLAEEFFHQIVKENVV 190
              ++GN++ A+  + +A ++         N  L  VL +   ++ A   + + ++ +  
Sbjct: 18  IKREQGNIEEAVRLYRKALEVFPEFAAAHSN--LASVLQQQGKLQEALMHYKEAIRIS-- 73

Query: 191 PPDVSTYTTMIRGYCKMGMIENAKKVFD-VMTVKPNL-LAYNTMINGFCKKGELEEAKKC 248
           P     Y+ M     +M  ++ A + +   + + P    A++ + +     G + EA   
Sbjct: 74  PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAS 133

Query: 249 MNEMMNRGCRPNEL-TYNAMIYGLCINGRVDEAKMLMAKMR 288
               +    +P+    Y  + + L I     +    M K+ 
Sbjct: 134 YRTALK--LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV 172

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 16/140 (11%), Positives = 45/140 (32%), Gaps = 6/140 (4%)

Query: 115 LKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSI 174
           +  ++++S    ++L  AY    N   A  ++ +  Q      +    +   + V     
Sbjct: 46  VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN-VDCLEACAEMQVCRGQE 104

Query: 175 KLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIEN-AKKVFD-VMTVKPNL-LAYNT 231
           K A   + +I++      +++    +   Y      E    +     ++    +  A   
Sbjct: 105 KDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR 162

Query: 232 MINGFCKKGELEEAKKCMNE 251
                      E+A+  + +
Sbjct: 163 DGLSKLFTTRYEKARNSLQK 182

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 29/258 (11%), Positives = 72/258 (27%), Gaps = 67/258 (25%)

Query: 132 AYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVP 191
           A  + G    A+ +F Q   +                     I   E ++   V +N   
Sbjct: 13  AAIEAGQNGQAVSYFRQTIALN--------------------IDRTEMYYWTNVDKN-SE 51

Query: 192 PDVSTYTTMIRGYCKMGMIENAKKVFD-VMTVKPN-LLAYNTMINGFCKKGELEEAKKCM 249
                 T +   Y K    + A   +  ++   PN +            +G+ ++A +  
Sbjct: 52  ISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRM- 110

Query: 250 NEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV 309
                         Y  ++                   +L    DN++ +  +  G    
Sbjct: 111 --------------YEKIL-------------------QLE--ADNLAANIFL--GNYYY 133

Query: 310 ---GKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV 366
               +  + +      + +       +            + ++A + L+  +     P+ 
Sbjct: 134 LTAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQ--KVILRFPST 190

Query: 367 FSFNAVFRILVENGELDR 384
            +   + +IL    E++R
Sbjct: 191 EAQKTLDKILRIEKEVNR 208

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 30/212 (14%), Positives = 70/212 (33%), Gaps = 23/212 (10%)

Query: 191 PPDVSTYTTMIRGYCKMGMIENAKKVFD-VMTVKP-NLLAYNTMINGFCKKGELEEAKKC 248
             ++    ++   +      +   K+   VM   P +       I    +  +  E    
Sbjct: 19  QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYL 78

Query: 249 MNEMMNRGCRPNE-LTYNAM-IYGLCINGRVDEAKMLMAK-MRLNGFKDNVSTHKSMLKG 305
            +++++    P+  +++ A+  Y L +  + + A+  ++K   L   K        +  G
Sbjct: 79  SHKLVDL--YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE--KTYGPAW--IAYG 132

Query: 306 --LCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVIN-G--FCKIGKSDEAISLLKEMRAR 360
               V  + DQA+       +  +      +  ++  G  +     S  A       +A 
Sbjct: 133 HSFAVESEHDQAMAAYFTAAQ--LMKG--CHLPMLYIGLEYGLTNNSKLAERFFS--QAL 186

Query: 361 GLKPT-VFSFNAVFRILVENGELDRAILLLKQ 391
            + P   F  + V  +  +NGE   A      
Sbjct: 187 SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLD 218

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 33/162 (20%), Positives = 55/162 (33%), Gaps = 19/162 (11%)

Query: 132 AYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLG-VLVRVNSIKLAEEFFHQIVKENVV 190
           ++        A+  +  A Q+  G  L      +G      N+ KLAE FF Q +     
Sbjct: 134 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLY--IGLEYGLTNNSKLAERFFSQALSIA-- 189

Query: 191 PPDVSTYTTMIRGYCKMGMIENAKKVFD-----------VMTVKPNLLAYNTMINGFCKK 239
           P D      +     + G  + A+K F             +TV       N + +   K 
Sbjct: 190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249

Query: 240 GELEEAKKCMNEMMNRGCRPNE-LTYNAMIYGLCINGRVDEA 280
            +  EA     + +     P    TY+A+ Y   + G  + A
Sbjct: 250 KKYAEALDYHRQALV--LIPQNASTYSAIGYIHSLMGNFENA 289

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 37/276 (13%), Positives = 78/276 (28%), Gaps = 39/276 (14%)

Query: 105 HSLISIAASLLKNSNKLSDFFISKLIK-------AYGDRGNV--------KAAIFWFHQA 149
             +       L  +N+L      KL+        ++   G          + A  +  +A
Sbjct: 59  LPVHIGTLVELNKANELFYLS-HKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA 117

Query: 150 KQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGM 209
             +       ++ +        +    A   +    +             +   Y     
Sbjct: 118 TTL-EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLTNN 174

Query: 210 IENAKKVFD-VMTVKPNL-LAYNTMINGFCKKGELEEAKKCMN-------EMMNRGCRPN 260
            + A++ F   +++ P      + +     + GE + A+K           + N      
Sbjct: 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234

Query: 261 -ELTYNAMIYGLCINGRVDEA-KMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGY 318
            E   N + +      +  EA       + L     N ST+ ++     ++G F+ AV Y
Sbjct: 235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP--QNASTYSAIGYIHSLMGNFENAVDY 292

Query: 319 LRNVMEANMNPDVKSYEVVIN-GFC--KIGKSDEAI 351
               +   +  D      V   G C        EA 
Sbjct: 293 FHTALG--LRRD--DTFSVTMLGHCIEMYIGDSEAY 324

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 43/288 (14%), Positives = 96/288 (33%), Gaps = 41/288 (14%)

Query: 127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVK 186
             L + +    + K          +  +          +G LV +N         H++V 
Sbjct: 26  VSLAERHYYNCDFKMCYKLTSVVMEK-DPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84

Query: 187 ENVVPPDVSTYTTMIRG--YCKMG-MIENAKKVFD-VMTVKPNLL-AYNTMINGFCKKGE 241
               P +  ++     G  Y  +G   E+A++      T++     A+    + F  + E
Sbjct: 85  LY--PSNPVSW--FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140

Query: 242 LEEAKKCMNE--MMNRGCRPNELTYNAMIY-G--LCINGRVDEAKMLMAK-MRLNGFKDN 295
            ++A         + +GC      +  M+Y G    +      A+   ++ + +    ++
Sbjct: 141 HDQAMAAYFTAAQLMKGC------HLPMLYIGLEYGLTNNSKLAERFFSQALSIA--PED 192

Query: 296 VSTHKSM---LKGLCVVGKFDQAVGYLRNVMEAN----MNPDVKSYEVVING----FCKI 344
                 +          G++  A  +  + +E          V  +E ++N       K+
Sbjct: 193 PFVMHEVGVVAFQN---GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249

Query: 345 GKSDEAISLLKEMRARGLKPTVFS-FNAVFRILVENGELDRAILLLKQ 391
            K  EA+   +  +A  L P   S ++A+  I    G  + A+     
Sbjct: 250 KKYAEALDYHR--QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 9/135 (6%)

Query: 237 CKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNV 296
             +G   +A + +      G         A++YG     R  +   +        + D  
Sbjct: 113 AAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGA--AERWTDV--IDQVKSAGKWPDKF 168

Query: 297 STHK-SMLKGLCVV--GKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC--KIGKSDEAI 351
                 +  G+       F +A   L    ++                     G    A+
Sbjct: 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV 228

Query: 352 SLLKEMRARGLKPTV 366
           +LL+ ++    +P V
Sbjct: 229 ALLEWLQTTHPEPKV 243

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 34/241 (14%), Positives = 69/241 (28%), Gaps = 17/241 (7%)

Query: 191 PPDVSTYTTMIRGYCKMGMIENAKKVFD-VMTVKPNL-LAYNTMINGFCKKGELEEAKKC 248
           P  V    +   G   +  ++    V      + P   +A  +   G      ++     
Sbjct: 69  PEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 128

Query: 249 MNEMMNRGCRPNE-LTYNAMIYGLCINGRVDEAKMLMAKMRLNGFK-DNVSTHKSMLKGL 306
           + +    G  P + +   +   G      V     L    + +G   + V    S   G 
Sbjct: 129 LCQAH--GLTPEQVVAIASHDGGKQALETVQAL--LPVLCQAHGLTPEQVVAIASNGGGK 184

Query: 307 CVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPT- 365
             +    + +  L           V +      G   +      + +L   +A GL P  
Sbjct: 185 QALETVQRLLPVLCQAHGLTPQ-QVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQ 241

Query: 366 VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLV 425
           V +  +          + R + +L Q   +   P  V     I      K  ++ V+ L+
Sbjct: 242 VVAIASNGGGKQALETVQRLLPVLCQAHGLT--PQQV---VAIASNSGGKQALETVQRLL 296

Query: 426 D 426
            
Sbjct: 297 P 297

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 21/199 (10%), Positives = 50/199 (25%), Gaps = 11/199 (5%)

Query: 132 AYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVP 191
                  V+  +    QA  +     + +  S  G    + +++       Q       P
Sbjct: 285 GKQALETVQRLLPVLCQAHGLTP-QQVVAIASNGGGKQALETVQRLLPVLCQAHGLT--P 341

Query: 192 PDVSTYTTMIRGYCKMGMIENAKKVFD-VMTVKPNL-LAYNTMINGFCKKGELEEAKKCM 249
             V    +   G   +  ++    V      + P   +A  +   G      ++     +
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 401

Query: 250 NEMMNRGCRPNE-LTYNAMIYGLCINGRVDEAKMLMAK-MRLNGFKDNVSTHKSMLKGLC 307
            +       P + +   +   G      V     ++ +   L      V    S   G  
Sbjct: 402 CQAHGL--TPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT--PQQVVAIASNGGGRP 457

Query: 308 VVGKFDQAVGYLRNVMEAN 326
            +      +      + A 
Sbjct: 458 ALESIVAQLSRPDPALAAL 476

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 37/268 (13%), Positives = 72/268 (26%), Gaps = 50/268 (18%)

Query: 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKML--MA 285
            Y      F    +LE+AK    +                            AK      
Sbjct: 38  EYAKAAVAFKNAKQLEQAKDAYLQ--------------EAEAHANNRSLFHAAKAFEQAG 83

Query: 286 KM--RLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA--NMNPD--VKSYEVVIN 339
            M   L    + V   +         G  D A   L    +    ++    V  Y+    
Sbjct: 84  MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAA 143

Query: 340 GFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQ----MPQM 395
            F    +  +A  L+ +                 R+LV   + D A   L++      +M
Sbjct: 144 VFENEERLRQAAELIGKAS---------------RLLVRQQKFDEAAASLQKEKSMYKEM 188

Query: 396 DCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMI---RSGHNLDFTMYSCLLKGYCEEGN 452
           +  P           + + +      +  V           + D      LL+ Y +E +
Sbjct: 189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAY-DEQD 247

Query: 453 VENVMQIAHEMVTKKGRLLKLKNFLTRV 480
            E +++     V +   +  + N   ++
Sbjct: 248 EEQLLR-----VCRSPLVTYMDNDYAKL 270

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	526
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.98
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.98
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.97
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.95
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.93
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.92
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.9
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.9
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.89
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.87
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.86
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.86
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.85
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.84
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.84
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.83
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.83
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.82
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.82
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.81
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.8
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.8
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.79
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.78
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.78
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.78
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.76
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.76
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.76
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.75
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.75
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.71
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.7
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.67
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.67
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.66
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.66
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.65
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.65
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.65
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.64
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.64
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.64
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.63
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.63
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.63
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.63
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.62
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.62
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.61
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.61
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.57
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.57
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.57
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.56
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.55
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.54
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.53
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.52
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.52
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.51
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.51
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.49
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.48
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.47
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.45
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.44
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.4
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.4
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.4
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.39
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.37
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.37
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.35
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.31
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.31
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.3
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.3
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.27
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.26
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.19
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.19
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.14
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.13
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.11
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.1
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.09
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.05
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.03
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.03
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.01
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.01
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.98
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.98
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.97
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.97
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.96
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.96
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.96
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.95
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.95
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.94
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.93
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.92
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.91
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.84
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.84
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.81
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.8
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.77
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.77
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.73
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.73
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.72
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.72
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.72
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.71
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.71
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.69
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.69
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.67
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.64
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.64
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.64
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.63
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.63
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.62
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.62
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.61
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.61
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.59
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.59
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.57
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.57
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.57
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.55
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.55
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.55
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.53
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.52
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.51
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.5
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.47
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.45
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.44
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.43
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.42
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.41
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.4
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.4
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.39
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.37
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.35
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.34
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.33
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.33
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.33
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.32
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.32
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.31
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.31
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.3
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.3
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.29
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.29
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.24
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.17
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.16
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.15
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.14
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.13
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.13
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.12
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.07
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.06
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.04
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.0
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.99
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.99
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.98
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.98
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.96
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.93
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.91
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.8
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.77
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.77
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.76
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.75
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.75
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.69
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.58
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.58
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.58
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.53
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.51
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.34
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.24
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.1
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.06
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.03
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.81
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.75
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.73
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.67
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.66
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.62
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.55
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.51
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.41
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.39
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.36
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.24
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.24
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.22
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.22
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.65
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.23
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.64
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.62
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.37
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.07
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	93.51
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	93.42
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.23
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.64
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	92.37
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.18
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.15
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	91.39
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	91.39
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	90.9
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	90.86
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	90.79
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.28
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	90.2
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	89.63
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.45
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	87.03
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	86.95
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	86.35
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	84.45
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	84.11
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	84.11
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	84.08
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	82.9
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	82.09
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	81.73
3eiq_C	358	Programmed cell death protein 4; PDCD4, anti-oncog	81.48
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	80.92
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	80.78

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-36  Score=314.50  Aligned_cols=402  Identities=10%  Similarity=-0.011  Sum_probs=350.4

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhc--CCCCHHHHHHHHHHH
Q 043068           56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNS--NKLSDFFISKLIKAY  133 (526)
Q Consensus        56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~li~~~  133 (526)
                      +.+++.+.+.|++++|+.+|+.+....|+       ..++..++.++.+.|++++|..++++.  ...++.+++.++.+|
T Consensus        88 ~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  160 (597)
T 2xpi_A           88 RLWRHDALMQQQYKCAAFVGEKVLDITGN-------PNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL  160 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCchHHHHHHHHHHhhCCC-------chHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence            45566777799999999999999865442       246788999999999999999999987  467788999999999


Q ss_pred             HcCCCHHHHHHHHHHHHhc---------------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHH
Q 043068          134 GDRGNVKAAIFWFHQAKQI---------------ENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYT  198 (526)
Q Consensus       134 ~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  198 (526)
                      .+.|++++|+++|+++...               +...+..+|+.++.+|.+.|++++|+++|+++.+.+  |.+...+.
T Consensus       161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~  238 (597)
T 2xpi_A          161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFD  238 (597)
T ss_dssp             HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHH
Confidence            9999999999999953321               112357899999999999999999999999999886  55665555


Q ss_pred             HH--------------------------------------HHHHHHcCChhhHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 043068          199 TM--------------------------------------IRGYCKMGMIENAKKVFDVM-TVKPNLLAYNTMINGFCKK  239 (526)
Q Consensus       199 ~l--------------------------------------i~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~  239 (526)
                      .+                                      +..|.+.|++++|.++|+++ ..+++..+|+.++.+|.+.
T Consensus       239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~  318 (597)
T 2xpi_A          239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR  318 (597)
T ss_dssp             HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred             HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence            44                                      45566789999999999998 4468999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHH
Q 043068          240 GELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYL  319 (526)
Q Consensus       240 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  319 (526)
                      |++++|+++|+++.+.+.. +..++..++.++.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|++++|.++|
T Consensus       319 g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~  396 (597)
T 2xpi_A          319 SRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF  396 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence            9999999999999987644 77889999999999999999999999998765 678899999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCc
Q 043068          320 RNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLP  399 (526)
Q Consensus       320 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p  399 (526)
                      +++.+.... +..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.. +.
T Consensus       397 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~  473 (597)
T 2xpi_A          397 SKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY  473 (597)
T ss_dssp             HHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred             HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence            999987543 78899999999999999999999999998874 3478899999999999999999999999998753 34


Q ss_pred             CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccc
Q 043068          400 NFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS----GHNLD--FTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLK  472 (526)
Q Consensus       400 ~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~  472 (526)
                      +..+|+.+...+++. |++++|.++++++.+.    +..|+  ..+|..++.+|.+.|++++|.+.++++++.++..+.
T Consensus       474 ~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  551 (597)
T 2xpi_A          474 DPLLLNELGVVAFNK-SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN  551 (597)
T ss_dssp             CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred             ChHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence            688899999998876 9999999999999886    66777  789999999999999999999999999999875553

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-35  Score=307.32  Aligned_cols=405  Identities=12%  Similarity=0.077  Sum_probs=352.0

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCC-------------
Q 043068           56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLS-------------  122 (526)
Q Consensus        56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------  122 (526)
                      ..+..++...|++++|+.+|+.+...       ..+..+++.++.+|.+.|++++|..+|++..+..             
T Consensus       121 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  193 (597)
T 2xpi_A          121 FWLAQVYCCTGDYARAKCLLTKEDLY-------NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQD  193 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHTCGG-------GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCC
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHhcc-------ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccc
Confidence            45667777899999999999988643       2345679999999999999999999999654443             


Q ss_pred             ------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHH--------------------------------
Q 043068          123 ------DFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSL--------------------------------  164 (526)
Q Consensus       123 ------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------------------------  164 (526)
                            ..+++.++.+|.+.|++++|+++|+++.+.++ .+...+..+                                
T Consensus       194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  272 (597)
T 2xpi_A          194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR  272 (597)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence                  66899999999999999999999999988764 233333333                                


Q ss_pred             ------HHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHHHHHHHH
Q 043068          165 ------LGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYNTMINGF  236 (526)
Q Consensus       165 ------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~  236 (526)
                            +..|.+.|++++|.++|+++.+.   +++..+|+.++.+|.+.|++++|.++|+++  ..+.+..+++.++.++
T Consensus       273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  349 (597)
T 2xpi_A          273 SLYMLKLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASL  349 (597)
T ss_dssp             HHHHTTSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHH
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHH
Confidence                  45566789999999999999865   579999999999999999999999999998  2244777899999999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHH
Q 043068          237 CKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAV  316 (526)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  316 (526)
                      .+.|++++|.++|+++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.
T Consensus       350 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~  427 (597)
T 2xpi_A          350 HESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAI  427 (597)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999764 4478899999999999999999999999998765 567889999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccC-
Q 043068          317 GYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQM-  395 (526)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-  395 (526)
                      ++|+++.+.+.. +..+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. 
T Consensus       428 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  505 (597)
T 2xpi_A          428 SAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV  505 (597)
T ss_dssp             HHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence            999999987643 78899999999999999999999999998764 347889999999999999999999999999874 


Q ss_pred             ---CCCcC--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc
Q 043068          396 ---DCLPN--FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRL  470 (526)
Q Consensus       396 ---~~~p~--~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~  470 (526)
                         +..|+  ..+|..+...+++. |++++|.++++++.+.++ .+..+|..++.+|.+.|++++|.+.|+++++.++..
T Consensus       506 ~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~  583 (597)
T 2xpi_A          506 KKTQSNEKPWAATWANLGHAYRKL-KMYDAAIDALNQGLLLST-NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE  583 (597)
T ss_dssp             HHSCCCSGGGHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hccccchhhHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence               55787  78999999998876 999999999999998763 389999999999999999999999999999999877


Q ss_pred             cchhhhH
Q 043068          471 LKLKNFL  477 (526)
Q Consensus       471 ~~~~~~~  477 (526)
                      +.....+
T Consensus       584 ~~~~~~l  590 (597)
T 2xpi_A          584 IMASDLL  590 (597)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            6544443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.98  E-value=3e-28  Score=238.25  Aligned_cols=367  Identities=13%  Similarity=0.046  Sum_probs=268.6

Q ss_pred             HHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 043068           99 TDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIK  175 (526)
Q Consensus        99 ~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  175 (526)
                      +..+.+.|++++|...+++..   +.+...+..+...+...|++++|...++......+ .+..+|..+...+.+.|+++
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~~   84 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHH
Confidence            344445555565555554432   22334455666667777788888887777776553 45677888888888888888


Q ss_pred             HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043068          176 LAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKCMNEMM  253 (526)
Q Consensus       176 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~  253 (526)
                      +|++.|+++.+..  |.+..+|..+..++.+.|++++|.+.|+++ ...| +...+..+...+...|++++|.+.|+++.
T Consensus        85 ~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  162 (388)
T 1w3b_A           85 EAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            8888888887765  666777888888888888888888888776 3333 34556677777777888888888888887


Q ss_pred             HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043068          254 NRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKS  333 (526)
Q Consensus       254 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  333 (526)
                      +.... +..+|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..+..+. +..+
T Consensus       163 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~  239 (388)
T 1w3b_A          163 ETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVV  239 (388)
T ss_dssp             HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHH
T ss_pred             HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHH
Confidence            76322 56777888888888888888888888887765 556677788888888888888888888888776543 5777


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh
Q 043068          334 YEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCM  413 (526)
Q Consensus       334 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~  413 (526)
                      +..+...|.+.|++++|++.|+++.+.+ +.+..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+..
T Consensus       240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~  317 (388)
T 1w3b_A          240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence            8888888888888888888888887763 2245677888888888888888888888887642 3456677777777665


Q ss_pred             cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhh
Q 043068          414 AKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKN  475 (526)
Q Consensus       414 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  475 (526)
                      . |++++|.+.++++++.. +.+..++..++.+|.+.|++++|.+.++++++..+..++...
T Consensus       318 ~-g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~  377 (388)
T 1w3b_A          318 Q-GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS  377 (388)
T ss_dssp             T-TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             c-CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence            4 88888888888887753 236778888888888888888888888888887775554433

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.98  E-value=3.3e-28  Score=237.94  Aligned_cols=379  Identities=16%  Similarity=0.106  Sum_probs=329.6

Q ss_pred             HHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHH
Q 043068           58 VTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYG  134 (526)
Q Consensus        58 l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~  134 (526)
                      +...+...|++++|+..|+.+.+..|+      +...+..++.++...|++++|...++...   +.+...+..+...|.
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~   78 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQEPD------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK   78 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            455677799999999999999877653      23457888999999999999999988643   556678999999999


Q ss_pred             cCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHH
Q 043068          135 DRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAK  214 (526)
Q Consensus       135 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  214 (526)
                      +.|++++|++.|+++....+ .+..+|..+..++.+.|++++|.+.|+++++..  |.+...+..+...+...|++++|.
T Consensus        79 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~  155 (388)
T 1w3b_A           79 ERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAK  155 (388)
T ss_dssp             HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHH
Confidence            99999999999999988763 456789999999999999999999999999986  777888999999999999999999


Q ss_pred             HHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 043068          215 KVFDVM-TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGF  292 (526)
Q Consensus       215 ~~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  292 (526)
                      +.|+++ .. +.+..+|..+...+.+.|++++|+..|+++.+.+.. +...|..+...+...|++++|...++++.+.. 
T Consensus       156 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-  233 (388)
T 1w3b_A          156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-  233 (388)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence            999987 32 345789999999999999999999999999987543 67789999999999999999999999998765 


Q ss_pred             CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043068          293 KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAV  372 (526)
Q Consensus       293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  372 (526)
                      +.+..++..+...|.+.|++++|...++++.+.++. +..+|..+...+.+.|++++|++.|+++.+.. +.+..++..+
T Consensus       234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  311 (388)
T 1w3b_A          234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNL  311 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence            567889999999999999999999999999997644 67889999999999999999999999998763 4577899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 043068          373 FRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGN  452 (526)
Q Consensus       373 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  452 (526)
                      ...+.+.|++++|.+.++++.+.. +.+...+..+...++.. |++++|.+.++++++..+. +...|..+...+.+.|+
T Consensus       312 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          312 ANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQ-GKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTT-TCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHHccC
Confidence            999999999999999999998843 33467788888887775 9999999999999986543 67888888888877664

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.97  E-value=9.7e-31  Score=260.78  Aligned_cols=186  Identities=16%  Similarity=0.258  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHcCCCCCHHh
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGR---------VDEAKMLMAKMRLNGFKDNVST  298 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~~  298 (526)
                      .++.+|++|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+.         +++|.++|++|.+.|+.||..|
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            4666677777777777777777777777777777777777777765543         5666667777766666677777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 043068          299 HKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVE  378 (526)
Q Consensus       299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~  378 (526)
                      |+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~  187 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD  187 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence            77777777777777777777777766666667777777777777777777777777777666666777777777777777


Q ss_pred             cCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh
Q 043068          379 NGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCM  413 (526)
Q Consensus       379 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~  413 (526)
                      .|++++|.++|++|.+.|..|+..||+.++..++.
T Consensus       188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            77777777777777666666776677666666543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.97  E-value=9.9e-31  Score=260.71  Aligned_cols=204  Identities=15%  Similarity=0.189  Sum_probs=179.7

Q ss_pred             hHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChhhHHHHHHhC---CCCCCHHHHHHHHHHHHhcCC---------
Q 043068          175 KLAEEFFHQIVKENVVPPD-VSTYTTMIRGYCKMGMIENAKKVFDVM---TVKPNLLAYNTMINGFCKKGE---------  241 (526)
Q Consensus       175 ~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~li~~~~~~g~---------  241 (526)
                      ..+..+.+++.+.+ +... ...++.+|.+|++.|++++|.++|++|   |+.||..+||+||.+|++.+.         
T Consensus         7 s~~e~L~~~~~~k~-~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~   85 (501)
T 4g26_A            7 SPSENLSRKAKKKA-IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG   85 (501)
T ss_dssp             ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred             chHHHHHHHHHHhc-ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence            44556667776666 3333 456889999999999999999999999   899999999999999998665         


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHH
Q 043068          242 LEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRN  321 (526)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  321 (526)
                      +++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++
T Consensus        86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~  165 (501)
T 4g26_A           86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH  165 (501)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 043068          322 VMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVEN  379 (526)
Q Consensus       322 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~  379 (526)
                      |.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus       166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999998764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.1e-24  Score=218.83  Aligned_cols=405  Identities=11%  Similarity=0.031  Sum_probs=317.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHH
Q 043068           57 IVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAY  133 (526)
Q Consensus        57 ~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~  133 (526)
                      .....+...|++++|+..|+.+....|       +..+|..++.++.+.|++++|...+++..   +.+...+..++.+|
T Consensus        11 ~~g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   83 (514)
T 2gw1_A           11 DKGNQFFRNKKYDDAIKYYNWALELKE-------DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN   83 (514)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcCc-------cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence            345667778999999999999998764       24578889999999999999999998654   44566888899999


Q ss_pred             HcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH----------------------------
Q 043068          134 GDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIV----------------------------  185 (526)
Q Consensus       134 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------------------------  185 (526)
                      ...|++++|+..|+++...++ ++......++..+.+......+.+.+..+.                            
T Consensus        84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (514)
T 2gw1_A           84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT  162 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred             HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence            999999999999999988774 344444444444443322222222221110                            


Q ss_pred             ------HcCC---------CCCCHHHHHHHHHHHHH---cCChhhHHHHHHhC-C-----C----------CCCHHHHHH
Q 043068          186 ------KENV---------VPPDVSTYTTMIRGYCK---MGMIENAKKVFDVM-T-----V----------KPNLLAYNT  231 (526)
Q Consensus       186 ------~~~~---------~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~-~-----~----------~p~~~~~~~  231 (526)
                            ....         -+.+...+..+...+..   .|++++|...|+++ .     .          +.+...+..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (514)
T 2gw1_A          163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH  242 (514)
T ss_dssp             HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence                  0000         01225555555555554   89999999999886 3     2          234567888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068          232 MINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGK  311 (526)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  311 (526)
                      +...+...|++++|...|+++.+....  ...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+
T Consensus       243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~  319 (514)
T 2gw1_A          243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN  319 (514)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence            999999999999999999999987543  8889999999999999999999999998765 5677889999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068          312 FDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQ  391 (526)
Q Consensus       312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  391 (526)
                      +++|...++++.+.... +...+..+...|...|++++|+..++++.+.. +.+...+..+...+.+.|++++|.+.+++
T Consensus       320 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~  397 (514)
T 2gw1_A          320 YDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL  397 (514)
T ss_dssp             TTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999999987654 67789999999999999999999999998763 23567888999999999999999999999


Q ss_pred             cccCCCCcC-------HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 043068          392 MPQMDCLPN-------FVSYNTIICGLCMA--KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHE  462 (526)
Q Consensus       392 ~~~~~~~p~-------~~~~~~ll~~~~~~--~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  462 (526)
                      +.+..  |+       ...+..+...+...  .|++++|...++++++.... +..++..+..+|.+.|++++|...+++
T Consensus       398 a~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~  474 (514)
T 2gw1_A          398 AIELE--NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEE  474 (514)
T ss_dssp             HHHHH--HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHhh--hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            87632  32       22677777676651  49999999999999987544 788999999999999999999999999


Q ss_pred             HHHcCCCccchhhhH
Q 043068          463 MVTKKGRLLKLKNFL  477 (526)
Q Consensus       463 m~~~~~~~~~~~~~~  477 (526)
                      +++.++..+.....+
T Consensus       475 a~~~~~~~~~~~~~~  489 (514)
T 2gw1_A          475 SADLARTMEEKLQAI  489 (514)
T ss_dssp             HHHHCSSHHHHHHHH
T ss_pred             HHHhccccHHHHHHH
Confidence            999999777665554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.94  E-value=2.8e-23  Score=207.05  Aligned_cols=334  Identities=13%  Similarity=0.101  Sum_probs=209.9

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY  204 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~  204 (526)
                      .+..++..|.+.|++++|+.+|+++....+ .+..+|..+..++...|++++|.+.|+++++.+  |.+..++..++.+|
T Consensus        28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~  104 (450)
T 2y4t_A           28 KHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRGHLL  104 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHH
Confidence            445555566666666666666666655442 345556666666666666666666666666554  45556666666666


Q ss_pred             HHcCChhhHHHHHHhC-CCCCCH----HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043068          205 CKMGMIENAKKVFDVM-TVKPNL----LAYNTM------------INGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAM  267 (526)
Q Consensus       205 ~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  267 (526)
                      .+.|++++|.+.|+++ ...|+.    ..+..+            ...+.+.|++++|+..|+++.+... .+..++..+
T Consensus       105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l  183 (450)
T 2y4t_A          105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELR  183 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHH
Confidence            6666666666666655 333332    333333            3346667777777777777766532 256667777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----------
Q 043068          268 IYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVV----------  337 (526)
Q Consensus       268 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----------  337 (526)
                      ..+|.+.|++++|..+|+++.+.. +.+..++..++..|...|++++|...++++.+..+. +...+..+          
T Consensus       184 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~  261 (450)
T 2y4t_A          184 AECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLI  261 (450)
T ss_dssp             HHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHH
Confidence            777777777777777777776553 455667777777777777777777777777765433 34444433          


Q ss_pred             --HHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 043068          338 --INGFCKIGKSDEAISLLKEMRARGLKPT-----VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICG  410 (526)
Q Consensus       338 --i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~  410 (526)
                        ...|.+.|++++|+..|+++.+.  .|+     ...+..+..++.+.|++++|++.++++.+.. +.+...|..+...
T Consensus       262 ~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~  338 (450)
T 2y4t_A          262 ESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEA  338 (450)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence              66777777888888888777664  333     3356677777777788888888877776532 2245666666666


Q ss_pred             HHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHhCC-----CHHHHHHHHHH-HHHcCCC
Q 043068          411 LCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKG------------YCEEG-----NVENVMQIAHE-MVTKKGR  469 (526)
Q Consensus       411 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~-m~~~~~~  469 (526)
                      +... |++++|...++++++..+. +..++..+..+            |...|     +.+++.+.+++ .++..++
T Consensus       339 ~~~~-~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd  413 (450)
T 2y4t_A          339 YLIE-EMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD  413 (450)
T ss_dssp             HHHT-TCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred             HHHh-cCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence            5544 7888888888877775433 55566666532            43444     56777888886 4555553

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.94  E-value=2.7e-23  Score=207.13  Aligned_cols=325  Identities=12%  Similarity=0.088  Sum_probs=267.6

Q ss_pred             HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068          141 AAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM  220 (526)
Q Consensus       141 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  220 (526)
                      .+...+.+.....+ .+...+..+...+.+.|++++|+++|+++++..  |.+..++..++.++...|++++|.+.|+++
T Consensus        10 ~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   86 (450)
T 2y4t_A           10 GVDLGTENLYFQSM-ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKV   86 (450)
T ss_dssp             -------------C-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccccccccccccH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34445555554443 557889999999999999999999999999876  788999999999999999999999999987


Q ss_pred             -C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHHHHcCCHHHHHH
Q 043068          221 -T-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE----LTYNAM------------IYGLCINGRVDEAKM  282 (526)
Q Consensus       221 -~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l------------i~~~~~~g~~~~a~~  282 (526)
                       . .+.+...+..++.+|.+.|++++|.+.|+++.+.  .|+.    ..+..+            ...+.+.|++++|+.
T Consensus        87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~  164 (450)
T 2y4t_A           87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA  164 (450)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence             2 2446788999999999999999999999999986  3443    455554            445889999999999


Q ss_pred             HHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043068          283 LMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGL  362 (526)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  362 (526)
                      .|+++.+.. +.+..++..++.+|.+.|++++|...|+++.+.... +..++..++..|...|++++|+..|+++.+.  
T Consensus       165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--  240 (450)
T 2y4t_A          165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKL--  240 (450)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence            999998875 678889999999999999999999999999987543 7889999999999999999999999999876  


Q ss_pred             CCC-HHHHHHH------------HHHHHHcCCHHHHHHHHHHcccCCCCcC-----HHHHHHHHHHHHhcCCCHHHHHHH
Q 043068          363 KPT-VFSFNAV------------FRILVENGELDRAILLLKQMPQMDCLPN-----FVSYNTIICGLCMAKGRMQDVEDL  424 (526)
Q Consensus       363 ~p~-~~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~ll~~~~~~~g~~~~a~~~  424 (526)
                      .|+ ...+..+            ...+.+.|++++|.+.|+++.+.  .|+     ...+..+...+.+. |++++|...
T Consensus       241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~  317 (450)
T 2y4t_A          241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKD-EKPVEAIRV  317 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHC-CCHHHHHHH
Confidence            343 3444444            78899999999999999999873  355     34677777777665 999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHH
Q 043068          425 VDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLT  478 (526)
Q Consensus       425 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~  478 (526)
                      ++++++..+. +..+|..++.+|...|++++|.+.++++++..+..+.....+.
T Consensus       318 ~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  370 (450)
T 2y4t_A          318 CSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE  370 (450)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred             HHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            9999986433 7899999999999999999999999999999987776655554

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=6.1e-23  Score=208.09  Aligned_cols=376  Identities=9%  Similarity=-0.061  Sum_probs=277.9

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHH
Q 043068           56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKA  132 (526)
Q Consensus        56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~  132 (526)
                      ..+..++...|++++|+..|+.+.+..|      ....+|..++.++.+.|++++|...+++..   +.+......++..
T Consensus        43 ~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  116 (514)
T 2gw1_A           43 SNLSACYVSVGDLKKVVEMSTKALELKP------DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLER  116 (514)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHH
T ss_pred             HhHHHHHHHHhhHHHHHHHHHHHhccCh------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHH
Confidence            3456677779999999999999997765      234679999999999999999999998653   2222222223332


Q ss_pred             HHcCCCHHHHHHHHH-----------------------------------HHHhcCCC---------CChhhHHHHHHHH
Q 043068          133 YGDRGNVKAAIFWFH-----------------------------------QAKQIENG---------ACLYSYNSLLGVL  168 (526)
Q Consensus       133 ~~~~g~~~~A~~~~~-----------------------------------~~~~~~~~---------~~~~~~~~li~~~  168 (526)
                      +........+.+.+.                                   .+......         .+...+......+
T Consensus       117 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (514)
T 2gw1_A          117 NLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSN  196 (514)
T ss_dssp             HHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            222211111111111                                   11111100         1133444444444


Q ss_pred             Hh---cCChhHHHHHHHHHHH-----cCCC-------CCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHHHHH
Q 043068          169 VR---VNSIKLAEEFFHQIVK-----ENVV-------PPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAYNTM  232 (526)
Q Consensus       169 ~~---~g~~~~A~~~~~~~~~-----~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l  232 (526)
                      ..   .|++++|...|+++.+     ....       +.+..++..+...+...|++++|.+.|+++ ...|+...+..+
T Consensus       197 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l  276 (514)
T 2gw1_A          197 LYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYM  276 (514)
T ss_dssp             HSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHH
Confidence            44   7999999999999987     3111       234567888999999999999999999987 334557788899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCH
Q 043068          233 INGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKF  312 (526)
Q Consensus       233 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  312 (526)
                      ...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus       277 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  354 (514)
T 2gw1_A          277 ALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKF  354 (514)
T ss_dssp             HHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999887433 67788899999999999999999999998865 55678889999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHH---cCCHHH
Q 043068          313 DQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLK-PT----VFSFNAVFRILVE---NGELDR  384 (526)
Q Consensus       313 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~  384 (526)
                      ++|...++++.+.... +...+..+...|...|++++|+..++++.+.... ++    ...+..+...+..   .|++++
T Consensus       355 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  433 (514)
T 2gw1_A          355 DDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE  433 (514)
T ss_dssp             HHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHH
T ss_pred             HHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHH
Confidence            9999999999887544 6678889999999999999999999998764211 11    3378889999999   999999


Q ss_pred             HHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043068          385 AILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCL  443 (526)
Q Consensus       385 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  443 (526)
                      |.+.++++.+.. +.+...+..+...+... |++++|...++++++..+. +...+..+
T Consensus       434 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~-~~~~~~~~  489 (514)
T 2gw1_A          434 ATNLLEKASKLD-PRSEQAKIGLAQMKLQQ-EDIDEAITLFEESADLART-MEEKLQAI  489 (514)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSS-HHHHHHHH
T ss_pred             HHHHHHHHHHhC-cccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhccc-cHHHHHHH
Confidence            999999988743 23456666677666665 9999999999999986543 34444433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.92  E-value=3.2e-22  Score=204.03  Aligned_cols=403  Identities=13%  Similarity=0.099  Sum_probs=305.9

Q ss_pred             HHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHH
Q 043068           57 IVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAY  133 (526)
Q Consensus        57 ~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~  133 (526)
                      .+...+...|++++|+..|+.+....|+      +..+|..++.++.+.|++++|...+++..   +.+...+..+...|
T Consensus        30 ~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  103 (537)
T 3fp2_A           30 NRGNHFFTAKNFNEAIKYYQYAIELDPN------EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHTTCCC-CHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            4566777799999999999999987653      35679999999999999999999999754   44566888999999


Q ss_pred             HcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-----CCCCCHH-------------
Q 043068          134 GDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKEN-----VVPPDVS-------------  195 (526)
Q Consensus       134 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~-------------  195 (526)
                      ...|++++|+..|+ .....  |+.  ....+..+...+....|...++++....     ...|+..             
T Consensus       104 ~~~g~~~~A~~~~~-~~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (537)
T 3fp2_A          104 ESLGNFTDAMFDLS-VLSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL  178 (537)
T ss_dssp             HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred             HHcCCHHHHHHHHH-HHhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence            99999999999996 43333  221  1223445555666678888888876531     0112221             


Q ss_pred             -----------------HHHHHHHHHH--------HcCChhhHHHHHHhC-CCCCC--------HHHHHHHHHHHHhcCC
Q 043068          196 -----------------TYTTMIRGYC--------KMGMIENAKKVFDVM-TVKPN--------LLAYNTMINGFCKKGE  241 (526)
Q Consensus       196 -----------------~~~~li~~~~--------~~g~~~~A~~~~~~~-~~~p~--------~~~~~~li~~~~~~g~  241 (526)
                                       ....+...+.        ..|++++|.++++++ ...|+        ..++..+...+...|+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~  258 (537)
T 3fp2_A          179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN  258 (537)
T ss_dssp             HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence                             1222222221        125788999999887 44444        3357777888999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHH
Q 043068          242 LEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRN  321 (526)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  321 (526)
                      +++|.+.|+++.+.  .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++
T Consensus       259 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  335 (537)
T 3fp2_A          259 LLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQK  335 (537)
T ss_dssp             HHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            99999999999987  5568889999999999999999999999998876 56788999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCC-----
Q 043068          322 VMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMD-----  396 (526)
Q Consensus       322 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----  396 (526)
                      +.+..+. +...+..+...|...|++++|+..++++.+.. +.+...+..+...+...|++++|.+.|+++.+..     
T Consensus       336 a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  413 (537)
T 3fp2_A          336 AQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK  413 (537)
T ss_dssp             HHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence            9987654 56789999999999999999999999998763 3356788999999999999999999999987632     


Q ss_pred             CCcCHHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043068          397 CLPNFVSYNTIICGLCMAK----------GRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTK  466 (526)
Q Consensus       397 ~~p~~~~~~~ll~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  466 (526)
                      .......+......+ ...          |++++|...++++++..+. +..++..+..+|.+.|++++|.+.|++.++.
T Consensus       414 ~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          414 IHVGIGPLIGKATIL-ARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             CSSTTHHHHHHHHHH-HHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH-HHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            001111122222222 234          8999999999999987544 7889999999999999999999999999999


Q ss_pred             CCCccchhhhH
Q 043068          467 KGRLLKLKNFL  477 (526)
Q Consensus       467 ~~~~~~~~~~~  477 (526)
                      .+..+......
T Consensus       492 ~~~~~~~~~~~  502 (537)
T 3fp2_A          492 ARTMDEKLQAT  502 (537)
T ss_dssp             C--CHHHHHHH
T ss_pred             CCCcHHHHHHH
Confidence            98777655543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.90  E-value=4.1e-20  Score=177.80  Aligned_cols=321  Identities=11%  Similarity=0.074  Sum_probs=191.1

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 043068          124 FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRG  203 (526)
Q Consensus       124 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~  203 (526)
                      ..+..+...+...|++++|+..|+++....+ .+..++..+...+...|++++|...|+++.+..  |.+...+..+..+
T Consensus         4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~   80 (359)
T 3ieg_A            4 EKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHH
Confidence            3455667777777888888888887776654 456677777777778888888888888877765  5667777777777


Q ss_pred             HHHcCChhhHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 043068          204 YCKMGMIENAKKVFDVM-TVKP----NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVD  278 (526)
Q Consensus       204 ~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  278 (526)
                      +...|++++|.+.|+++ ...|    +...+..+...+.                       ...+..+...+...|+++
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~  137 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT  137 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred             HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence            88888888888777776 4444    2233333311000                       001112233444445555


Q ss_pred             HHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068          279 EAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMR  358 (526)
Q Consensus       279 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  358 (526)
                      +|...++++.+.. +.+..++..+...+...|++++|...++++.+..+. +..++..+...|...|++++|...+++..
T Consensus       138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~  215 (359)
T 3ieg_A          138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECL  215 (359)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5555554444433 334444444555555555555555555554444322 44445555555555555555555555544


Q ss_pred             HCCCCCCHHHH------------HHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHH-----HHHHHHHHHHhcCCCHHHH
Q 043068          359 ARGLKPTVFSF------------NAVFRILVENGELDRAILLLKQMPQMDCLPNFV-----SYNTIICGLCMAKGRMQDV  421 (526)
Q Consensus       359 ~~~~~p~~~~~------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-----~~~~ll~~~~~~~g~~~~a  421 (526)
                      +... .+...+            ..+...+.+.|++++|.+.++++.+..  |+..     .+..+...+.. .|++++|
T Consensus       216 ~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~-~~~~~~A  291 (359)
T 3ieg_A          216 KLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSK-DEKPVEA  291 (359)
T ss_dssp             HHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred             hhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHH-ccCHHHH
Confidence            4311 111111            123556777788888888887777632  3321     23334444444 4888888


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhH
Q 043068          422 EDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFL  477 (526)
Q Consensus       422 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  477 (526)
                      ...++++++..+. +..+|..+..+|.+.|++++|.+.++++++..+..+.....+
T Consensus       292 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  346 (359)
T 3ieg_A          292 IRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL  346 (359)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            8888888876433 677888888888888888888888888888887666554443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.90  E-value=3.4e-20  Score=178.35  Aligned_cols=291  Identities=14%  Similarity=0.154  Sum_probs=219.2

Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHHH
Q 043068          158 LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMING  235 (526)
Q Consensus       158 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~~  235 (526)
                      +..+..+...+...|++++|+..|+++++..  |.+..++..+...+...|++++|.+.|+++ .. +.+...+..+...
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~   80 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            4556677778888888888888888888775  667778888888888888888888888776 22 2356677777788


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068          236 FCKKGELEEAKKCMNEMMNRGCRP----NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGK  311 (526)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  311 (526)
                      +...|++++|...|+++.+.  .|    +...+..+...+.                       ...+..+...+...|+
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~  135 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD  135 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred             HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence            88888888888888877765  33    2222222221110                       1123345678899999


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068          312 FDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQ  391 (526)
Q Consensus       312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  391 (526)
                      +++|...++++.+..+. +...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|.+.+++
T Consensus       136 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~  213 (359)
T 3ieg_A          136 YTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE  213 (359)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999988654 78899999999999999999999999998763 34678899999999999999999999999


Q ss_pred             cccCCCCcCH-HHHHH------------HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHH
Q 043068          392 MPQMDCLPNF-VSYNT------------IICGLCMAKGRMQDVEDLVDRMIRSGHNLDF----TMYSCLLKGYCEEGNVE  454 (526)
Q Consensus       392 ~~~~~~~p~~-~~~~~------------ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~  454 (526)
                      ..+..  |+. ..+..            +...+... |++++|...++++++..+. +.    ..+..+..+|.+.|+++
T Consensus       214 a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~  289 (359)
T 3ieg_A          214 CLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRD-GRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPV  289 (359)
T ss_dssp             HHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHH
Confidence            98743  432 22221            13345554 9999999999999986544 44    33566888999999999


Q ss_pred             HHHHHHHHHHHcCCCccchhhhHHHHH
Q 043068          455 NVMQIAHEMVTKKGRLLKLKNFLTRVV  481 (526)
Q Consensus       455 ~a~~~~~~m~~~~~~~~~~~~~~~~~~  481 (526)
                      +|.+.+++.++.++..+.....++.+.
T Consensus       290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~  316 (359)
T 3ieg_A          290 EAIRICSEVLQMEPDNVNALKDRAEAY  316 (359)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            999999999999887766555544433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.89  E-value=4.5e-20  Score=188.14  Aligned_cols=369  Identities=9%  Similarity=0.018  Sum_probs=275.1

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 043068           92 TPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVL  168 (526)
Q Consensus        92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~  168 (526)
                      ...|..++..+.+.|++++|...+++..   +.++..+..+..+|...|++++|++.|+++...++ .+..++..+..++
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~  103 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHH
Confidence            3467888999999999999999988754   45567888899999999999999999999988774 4678888899999


Q ss_pred             HhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC--------CCCHH------------
Q 043068          169 VRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV--------KPNLL------------  227 (526)
Q Consensus       169 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~--------~p~~~------------  227 (526)
                      ...|++++|.+.|+.+ ...   |+.  ....+..+...+...+|...++++ ..        .|+..            
T Consensus       104 ~~~g~~~~A~~~~~~~-~~~---~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (537)
T 3fp2_A          104 ESLGNFTDAMFDLSVL-SLN---GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH  177 (537)
T ss_dssp             HHHTCHHHHHHHHHHH-C----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred             HHcCCHHHHHHHHHHH-hcC---CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence            9999999999999633 322   221  122233444455556666666654 11        12211            


Q ss_pred             ------------------HHHHHHHHHH--------hcCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHc
Q 043068          228 ------------------AYNTMINGFC--------KKGELEEAKKCMNEMMNRGCRPN-------ELTYNAMIYGLCIN  274 (526)
Q Consensus       228 ------------------~~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~li~~~~~~  274 (526)
                                        ....+...+.        ..|++++|..+|+++.+.... +       ..++..+...+...
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~  256 (537)
T 3fp2_A          178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLK  256 (537)
T ss_dssp             HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhc
Confidence                              1122222211        125789999999999876332 2       23567777888999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043068          275 GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLL  354 (526)
Q Consensus       275 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  354 (526)
                      |++++|...++++.+..  |+..++..+...+...|++++|...++++.+..+. +..++..+...+...|++++|+..+
T Consensus       257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~  333 (537)
T 3fp2_A          257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDF  333 (537)
T ss_dssp             TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            99999999999998864  55888999999999999999999999999987654 7888999999999999999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC
Q 043068          355 KEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHN  434 (526)
Q Consensus       355 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~  434 (526)
                      +++.+.. +.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+... |++++|.+.++++++....
T Consensus       334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~  410 (537)
T 3fp2_A          334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDR-GDFDTAIKQYDIAKRLEEV  410 (537)
T ss_dssp             HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCc
Confidence            9998764 2256788999999999999999999999998743 23345666666666655 9999999999999875321


Q ss_pred             -----CCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHcCCCccchh
Q 043068          435 -----LDFTMYSCLLKGYCEE----------GNVENVMQIAHEMVTKKGRLLKLK  474 (526)
Q Consensus       435 -----p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~  474 (526)
                           .....+..+..++.+.          |++++|...++++++..+..+...
T Consensus       411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  465 (537)
T 3fp2_A          411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAK  465 (537)
T ss_dssp             CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHH
Confidence                 1223355566778888          999999999999999988666443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.87  E-value=2.8e-19  Score=169.94  Aligned_cols=287  Identities=12%  Similarity=0.026  Sum_probs=186.8

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 043068          123 DFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIR  202 (526)
Q Consensus       123 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~  202 (526)
                      +..+..++..+...|++++|+++|+++....+ .+...+..++..+...|++++|..+++++.+..  |.+..++..+..
T Consensus        22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~   98 (330)
T 3hym_B           22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGC   98 (330)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHH
Confidence            34455666677777777777777777776653 345566666777777777777777777777765  566777777777


Q ss_pred             HHHHcC-ChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 043068          203 GYCKMG-MIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDE  279 (526)
Q Consensus       203 ~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  279 (526)
                      .+...| ++++|.+.|++. ...| +...|..+...+...|++++|++.|+++.+.... +...+..+...+...|++++
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~  177 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKL  177 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHH
Confidence            777777 777777777765 2223 4556777777777777777777777777766332 34556667777777777777


Q ss_pred             HHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CCCHHHHHHHHHHHHhcCChhHHH
Q 043068          280 AKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANM--------NPDVKSYEVVINGFCKIGKSDEAI  351 (526)
Q Consensus       280 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~  351 (526)
                      |...++++.+.. +.+..++..+...+...|++++|...++++.+...        ..+..++..+...|...|++++|+
T Consensus       178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  256 (330)
T 3hym_B          178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL  256 (330)
T ss_dssp             HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence            777777776654 45566677777777777777777777777665321        223456666667777777777777


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCCC
Q 043068          352 SLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLP-NFVSYNTIICGLCMAKGR  417 (526)
Q Consensus       352 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~g~  417 (526)
                      ..+++..+.. +.+...+..+...+.+.|++++|.+.++++.+.  .| +...+..+...+....|+
T Consensus       257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~  320 (330)
T 3hym_B          257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGD  320 (330)
T ss_dssp             HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCc
Confidence            7777666542 224556666666666777777777777766653  23 334444444443233344

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.86  E-value=3.8e-17  Score=164.45  Aligned_cols=353  Identities=12%  Similarity=0.049  Sum_probs=292.3

Q ss_pred             hhhHHHHHHHHHh----CCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCCCChhhHH
Q 043068           92 TPCYTAITDVLLS----HSLISIAASLLKNSNK-LSDFFISKLIKAYGD----RGNVKAAIFWFHQAKQIENGACLYSYN  162 (526)
Q Consensus        92 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~  162 (526)
                      ..++..++..+..    .+++++|..++++... -++..+..|...|..    .+++++|+++|++....+   +...+.
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~  115 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQ  115 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            3456777777777    7899999999987543 355677788888888    899999999999988765   567788


Q ss_pred             HHHHHHHh----cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCChhhHHHHHHhCCCCCCHHHHHHHHH
Q 043068          163 SLLGVLVR----VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK----MGMIENAKKVFDVMTVKPNLLAYNTMIN  234 (526)
Q Consensus       163 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~  234 (526)
                      .|...|..    .+++++|.+.|++..+.+    +...+..|...|..    .++.++|.++|++.-...+...+..+..
T Consensus       116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~  191 (490)
T 2xm6_A          116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY  191 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            88888888    789999999999998876    67888889998887    7899999999998722347888888999


Q ss_pred             HHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043068          235 GFCK----KGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCI----NGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGL  306 (526)
Q Consensus       235 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  306 (526)
                      .|..    .++.++|.+.|++..+.|   +...+..+...|..    .+++++|..+|++..+.|   +...+..+...|
T Consensus       192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y  265 (490)
T 2xm6_A          192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL  265 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred             HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence            9988    899999999999998875   56778888888886    789999999999998754   456777788888


Q ss_pred             HH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043068          307 CV----VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKI-----GKSDEAISLLKEMRARGLKPTVFSFNAVFRILV  377 (526)
Q Consensus       307 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~  377 (526)
                      ..    .++.++|..+|++..+.+   +...+..+...|...     +++++|+..|++..+.|   +...+..+...|.
T Consensus       266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~  339 (490)
T 2xm6_A          266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF  339 (490)
T ss_dssp             HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence            88    899999999999998764   566788888888887     89999999999998875   4567777888888


Q ss_pred             HcC---CHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 043068          378 ENG---ELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMA---KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCE--  449 (526)
Q Consensus       378 ~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--  449 (526)
                      +.|   +.++|+++|++..+.+   +...+..+-..+...   .++.++|.+++++..+.|   ++..+..|...|.+  
T Consensus       340 ~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~  413 (490)
T 2xm6_A          340 RLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGL  413 (490)
T ss_dssp             HSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred             hCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCC
Confidence            766   7899999999998864   455666666666551   389999999999999875   57788999999998  


Q ss_pred             --CCCHHHHHHHHHHHHHcCCC
Q 043068          450 --EGNVENVMQIAHEMVTKKGR  469 (526)
Q Consensus       450 --~g~~~~a~~~~~~m~~~~~~  469 (526)
                        .++.++|...|++..+.++.
T Consensus       414 g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          414 GVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCC
Confidence              89999999999999999864

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.86  E-value=1.3e-18  Score=165.38  Aligned_cols=291  Identities=11%  Similarity=0.002  Sum_probs=182.0

Q ss_pred             CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHHHHH
Q 043068          156 ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYNTMI  233 (526)
Q Consensus       156 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li  233 (526)
                      .+...+..+...+...|++++|.++|+++.+..  |.+..++..++.++...|++++|..+++++  ..+.+...|..+.
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~   97 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG   97 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            445556666666667777777777777776665  555556666666677777777777777665  1123455666666


Q ss_pred             HHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCH
Q 043068          234 NGFCKKG-ELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKF  312 (526)
Q Consensus       234 ~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  312 (526)
                      ..+...| ++++|.+.|++..+.... +...|..+...+...|++++|...++++.+.. +.+...+..+...|...|++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~  175 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS  175 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence            7777777 677777777777665322 45566667777777777777777777766654 33455566667777777777


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHcCCHHH
Q 043068          313 DQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARG--------LKPTVFSFNAVFRILVENGELDR  384 (526)
Q Consensus       313 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~  384 (526)
                      ++|...++++.+..+. +...+..+...+...|++++|+..++++.+..        ......++..+...+.+.|++++
T Consensus       176 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  254 (330)
T 3hym_B          176 KLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE  254 (330)
T ss_dssp             HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            7777777777665433 56666677777777777777777777665431        02234566667777777777777


Q ss_pred             HHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhCCCHH
Q 043068          385 AILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGY-CEEGNVE  454 (526)
Q Consensus       385 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~  454 (526)
                      |.+.++++.+.. +.+...+..+...+... |++++|.+.++++++..+. +...+..+..++ ...|+.+
T Consensus       255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          255 ALDYHRQALVLI-PQNASTYSAIGYIHSLM-GNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHHS-TTCSHHHHHHHHHHHHH-TCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHhhC-ccchHHHHHHHHHHHHh-ccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCchh
Confidence            777777766532 12334455555554444 7777777777776664332 566666666666 3445443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.85  E-value=7.9e-17  Score=162.13  Aligned_cols=380  Identities=11%  Similarity=0.073  Sum_probs=305.6

Q ss_pred             HHHHHHHh----cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHh----CCCHHHHHHHHHhcCCC-CHHHHH
Q 043068           57 IVTKVIYE----QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLS----HSLISIAASLLKNSNKL-SDFFIS  127 (526)
Q Consensus        57 ~l~~~l~~----~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~  127 (526)
                      .+...+..    .+++++|+.+|+.+.+.+        ...++..++..+..    .+++++|..++++.... ++..+.
T Consensus        44 ~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~  115 (490)
T 2xm6_A           44 ELGYRYFQGNETTKDLTQAMDWFRRAAEQG--------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQ  115 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            45555665    789999999999998642        24578889999998    89999999999976533 566777


Q ss_pred             HHHHHHHc----CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 043068          128 KLIKAYGD----RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVR----VNSIKLAEEFFHQIVKENVVPPDVSTYTT  199 (526)
Q Consensus       128 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  199 (526)
                      .|...|..    .+++++|+.+|++....+   +...+..+...|..    .+++++|.+.|++..+.+    +...+..
T Consensus       116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~a~~~  188 (490)
T 2xm6_A          116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----NVWSCNQ  188 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHH
Confidence            88888888    889999999999998765   47788888888887    789999999999999876    7889999


Q ss_pred             HHHHHHH----cCChhhHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043068          200 MIRGYCK----MGMIENAKKVFDVMTVKPNLLAYNTMINGFCK----KGELEEAKKCMNEMMNRGCRPNELTYNAMIYGL  271 (526)
Q Consensus       200 li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  271 (526)
                      +...|..    .++.++|.++|++.-...+...+..+...|..    .+++++|.++|++..+.|   +...+..+...|
T Consensus       189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y  265 (490)
T 2xm6_A          189 LGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL  265 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence            9999998    89999999999987334567788888888887    899999999999998764   566777888888


Q ss_pred             HH----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043068          272 CI----NGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV-----GKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC  342 (526)
Q Consensus       272 ~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~  342 (526)
                      ..    .++.++|..+|++..+.|   +...+..+...|...     +++++|...|++..+.+   +...+..+...|.
T Consensus       266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~  339 (490)
T 2xm6_A          266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF  339 (490)
T ss_dssp             HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence            88    899999999999998764   456777888888887     89999999999999875   5677888888888


Q ss_pred             hcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc-
Q 043068          343 KIG---KSDEAISLLKEMRARGLKPTVFSFNAVFRILVE----NGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMA-  414 (526)
Q Consensus       343 ~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-  414 (526)
                      ..|   ++++|++.|++..+.|   +...+..+...|..    .+++++|.+.|++..+.+   +...+..+-..+... 
T Consensus       340 ~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~  413 (490)
T 2xm6_A          340 RLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGL  413 (490)
T ss_dssp             HSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred             hCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCC
Confidence            766   7899999999998874   67788889999998    899999999999998865   455666666665541 


Q ss_pred             --CCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          415 --KGRMQDVEDLVDRMIRSGHN-L-DFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       415 --~g~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                        .++.++|...|++..+.+.. | +......+...+.  .+.+.+.+..++..++.+
T Consensus       414 g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~~~~~~  469 (490)
T 2xm6_A          414 GVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQYIEKYA  469 (490)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHHHHHHH
Confidence              48999999999999998754 2 3344444444333  244555555555555543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.84  E-value=3.1e-18  Score=171.61  Aligned_cols=368  Identities=11%  Similarity=-0.006  Sum_probs=243.1

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHhcC------------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----
Q 043068           92 TPCYTAITDVLLSHSLISIAASLLKNSN------------KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIEN-----  154 (526)
Q Consensus        92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----  154 (526)
                      ...|+.++.++...|++++|.+.+++..            .....+|+.+...|...|++++|...++++.....     
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            4468888888888999999888877532            12345788888899999999999998888754321     


Q ss_pred             -C-CChhhHHHHHHHHHhc--CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH---HcCChhhHHHHHHhC-CCC-CC
Q 043068          155 -G-ACLYSYNSLLGVLVRV--NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC---KMGMIENAKKVFDVM-TVK-PN  225 (526)
Q Consensus       155 -~-~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~-~~~-p~  225 (526)
                       . ....++..+..++.+.  +++++|++.|++.++..  |.+...+..+..++.   ..++.++|++.+++. .+. .+
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~  208 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN  208 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence             1 1245566665555554  46889999999998876  667777776666543   457778888888765 323 34


Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 043068          226 LLAYNTMINGFCK----KGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKS  301 (526)
Q Consensus       226 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  301 (526)
                      ...+..+...+..    .|++++|.+.+++....... +..++..+...|...|++++|...++++.+.. +.+..++..
T Consensus       209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~  286 (472)
T 4g1t_A          209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ  286 (472)
T ss_dssp             HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence            5566655555544    46778899999888876433 67778888889999999999999999988765 556667776


Q ss_pred             HHHHHHHc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043068          302 MLKGLCVV-------------------GKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGL  362 (526)
Q Consensus       302 li~~~~~~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  362 (526)
                      +...|...                   +..+.|...+++..+.++. +..++..+...|...|++++|+..|++..+...
T Consensus       287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~  365 (472)
T 4g1t_A          287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKEL  365 (472)
T ss_dssp             HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence            66665432                   3356788888888776543 556688899999999999999999999988744


Q ss_pred             CCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 043068          363 KPTVF--SFNAVFR-ILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTM  439 (526)
Q Consensus       363 ~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  439 (526)
                      .+...  .+..+.. ...+.|+.++|+..|++..+  +.|+.....          +....+.+++++.++.++. ++.+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~----------~~~~~l~~~~~~~l~~~p~-~~~~  432 (472)
T 4g1t_A          366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKE----------KMKDKLQKIAKMRLSKNGA-DSEA  432 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHH----------HHHHHHHHHHHHHHHHCC--CTTH
T ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHH----------HHHHHHHHHHHHHHHhCCC-CHHH
Confidence            33221  2222222 23568999999999999887  446543222          2344556677777776544 7889


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhH
Q 043068          440 YSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFL  477 (526)
Q Consensus       440 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  477 (526)
                      |..|..+|...|++++|++.|++.++.++..|+..+++
T Consensus       433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~  470 (472)
T 4g1t_A          433 LHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN  470 (472)
T ss_dssp             HHHHHHHHHHHHHCC-----------------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence            99999999999999999999999999999888766553

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.84  E-value=3.3e-19  Score=172.46  Aligned_cols=306  Identities=9%  Similarity=-0.018  Sum_probs=174.1

Q ss_pred             HHcCCCHHHHHH-HHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068          133 YGDRGNVKAAIF-WFHQAKQIENG---ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG  208 (526)
Q Consensus       133 ~~~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  208 (526)
                      +...|++++|++ .|++.......   .+...+..+...+.+.|++++|...|+++++..  |.+..++..+..++.+.|
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g  112 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENE  112 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCc
Confidence            445577888887 77765544321   134567778888888888888888888888776  677788888888888888


Q ss_pred             ChhhHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068          209 MIENAKKVFDVM-T-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAK  286 (526)
Q Consensus       209 ~~~~A~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  286 (526)
                      ++++|.+.|+++ . .+.+..++..+...+...|++++|++.|+++.+.... +...+..+...       ..       
T Consensus       113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------  177 (368)
T 1fch_A          113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------  177 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------
Confidence            888888888776 2 2346677778888888888888888888888776322 11111111000       00       


Q ss_pred             HHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 043068          287 MRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNP-DVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPT  365 (526)
Q Consensus       287 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  365 (526)
                      ..    .+ ...+..+.. +...|++++|...++++.+..+.. +..++..+...|...|++++|+..++++.+.. +.+
T Consensus       178 ~~----~~-~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~  250 (368)
T 1fch_A          178 GA----GL-GPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND  250 (368)
T ss_dssp             -------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             hh----cc-cHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence            00    00 000111112 225555555555555555543221 34555555556666666666666666555442 123


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC----------C
Q 043068          366 VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHN----------L  435 (526)
Q Consensus       366 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~----------p  435 (526)
                      ...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+... |++++|...++++++..+.          .
T Consensus       251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  328 (368)
T 1fch_A          251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL-GAHREAVEHFLEALNMQRKSRGPRGEGGAM  328 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence            4555566666666666666666666655422 12344455555554443 6666666666666554222          1


Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043068          436 DFTMYSCLLKGYCEEGNVENVMQIAHEMV  464 (526)
Q Consensus       436 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  464 (526)
                      ...+|..+..+|.+.|++++|..++++.+
T Consensus       329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  357 (368)
T 1fch_A          329 SENIWSTLRLALSMLGQSDAYGAADARDL  357 (368)
T ss_dssp             CHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred             hhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence            26778888888888888888887776443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.83  E-value=1.3e-18  Score=168.19  Aligned_cols=264  Identities=11%  Similarity=0.039  Sum_probs=186.0

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY  204 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~  204 (526)
                      .+..+...|...|++++|+..|+++....+ .+..++..+...+.+.|++++|.+.|+++.+..  |.+..++..+..++
T Consensus        66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~  142 (368)
T 1fch_A           66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSF  142 (368)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence            345566666677777777777777766553 345666677777777777777777777777665  55667777777777


Q ss_pred             HHcCChhhHHHHHHhC-CCCCCH-HHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHH
Q 043068          205 CKMGMIENAKKVFDVM-TVKPNL-LAYNT---------------MINGFCKKGELEEAKKCMNEMMNRGCRP-NELTYNA  266 (526)
Q Consensus       205 ~~~g~~~~A~~~~~~~-~~~p~~-~~~~~---------------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~  266 (526)
                      ...|++++|.+.++++ ...|+. ..+..               .+..+...|++++|+..|+++.+..... +..++..
T Consensus       143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~  222 (368)
T 1fch_A          143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG  222 (368)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence            7777777777777665 112211 11110               2333337788888888888888763321 4677888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043068          267 MIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGK  346 (526)
Q Consensus       267 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  346 (526)
                      +...+.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+..+. +..++..+...|.+.|+
T Consensus       223 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~  300 (368)
T 1fch_A          223 LGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGA  300 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCC
Confidence            8888888888888888888887764 556778888888888888888888888888876533 67788888888888888


Q ss_pred             hhHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q 043068          347 SDEAISLLKEMRARGLKP----------TVFSFNAVFRILVENGELDRAILLLKQMP  393 (526)
Q Consensus       347 ~~~A~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~a~~~~~~~~  393 (526)
                      +++|...|+++.+.....          ...+|..+..+|...|+.++|..++++..
T Consensus       301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  357 (368)
T 1fch_A          301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL  357 (368)
T ss_dssp             HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence            888888888876542110          15678888888888888888888776543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.83  E-value=1.6e-18  Score=167.45  Aligned_cols=264  Identities=11%  Similarity=-0.013  Sum_probs=205.9

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY  204 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~  204 (526)
                      .+..+...+.+.|++++|+..|+++....+ .+..+|..+...+.+.|++++|++.|+++++..  |.+..++..+..+|
T Consensus        67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~  143 (365)
T 4eqf_A           67 GAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAVSY  143 (365)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence            466777788888888888888888887664 467788888888888888888888888888876  67788888888888


Q ss_pred             HHcCChhhHHHHHHhC-CCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 043068          205 CKMGMIENAKKVFDVM-TVKPN-----------LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCR-PNELTYNAMIYGL  271 (526)
Q Consensus       205 ~~~g~~~~A~~~~~~~-~~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~  271 (526)
                      ...|++++|.+.|+++ ...|+           ...+..+...+.+.|++++|++.|+++.+.... ++..++..+...+
T Consensus       144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  223 (365)
T 4eqf_A          144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF  223 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred             HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence            8888888888888876 22222           233445678888999999999999999887432 2578888999999


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043068          272 CINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAI  351 (526)
Q Consensus       272 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  351 (526)
                      .+.|++++|+..++++.+.. +.+..++..+...|.+.|++++|...|+++.+..+. +..++..+...|...|++++|+
T Consensus       224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~  301 (365)
T 4eqf_A          224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAV  301 (365)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999988765 567888999999999999999999999999887544 6888999999999999999999


Q ss_pred             HHHHHHHHCCCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q 043068          352 SLLKEMRARGLK-----------PTVFSFNAVFRILVENGELDRAILLLKQMP  393 (526)
Q Consensus       352 ~~~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~  393 (526)
                      ..|+++.+....           .+...|..+..++...|+.+.+.++.++-.
T Consensus       302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l  354 (365)
T 4eqf_A          302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL  354 (365)
T ss_dssp             HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence            999988764211           125678888888899999998888877643

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.82  E-value=5.8e-16  Score=157.42  Aligned_cols=371  Identities=9%  Similarity=0.008  Sum_probs=194.5

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 043068           92 TPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVL  168 (526)
Q Consensus        92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~  168 (526)
                      ..+|..++.. .+.|++++|..++++..   +.+...|..++..+.+.|++++|..+|+++....  |++..|...+...
T Consensus        13 ~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~   89 (530)
T 2ooe_A           13 LDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYV   89 (530)
T ss_dssp             HHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHH
Confidence            3445555553 45566666666666543   2233455566666666666666666666665544  3444555444322


Q ss_pred             -HhcCChhHHHH----HHHHHHHc-CCCCCCHHHHHHHHHHHHH---------cCChhhHHHHHHhCCCCCC---HHHHH
Q 043068          169 -VRVNSIKLAEE----FFHQIVKE-NVVPPDVSTYTTMIRGYCK---------MGMIENAKKVFDVMTVKPN---LLAYN  230 (526)
Q Consensus       169 -~~~g~~~~A~~----~~~~~~~~-~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~p~---~~~~~  230 (526)
                       ...|+++.|.+    +|++.+.. |.-+++...|...+....+         .|++++|.++|++.-..|.   ...|.
T Consensus        90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~  169 (530)
T 2ooe_A           90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR  169 (530)
T ss_dssp             HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred             HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence             23455554443    45444432 2112345555555554443         4556666666665411222   12222


Q ss_pred             HHHHHH-------------HhcCCHHHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHHHc----CC
Q 043068          231 TMINGF-------------CKKGELEEAKKCMNEMM------NRG---CRPN--------ELTYNAMIYGLCIN----GR  276 (526)
Q Consensus       231 ~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~--------~~~~~~li~~~~~~----g~  276 (526)
                      ......             .+.++++.|..+++++.      +..   +.|+        ...|...+......    ++
T Consensus       170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~  249 (530)
T 2ooe_A          170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED  249 (530)
T ss_dssp             HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred             HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence            211110             12344555665555422      111   2232        12343333222221    12


Q ss_pred             H----HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHH
Q 043068          277 V----DEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV-------VGKFD-------QAVGYLRNVMEANMNPDVKSYEVVI  338 (526)
Q Consensus       277 ~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~li  338 (526)
                      .    +++..+|+++.... +.+...|..++..+.+       .|+++       +|..++++..+.-.+.+...|..++
T Consensus       250 ~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~  328 (530)
T 2ooe_A          250 QTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA  328 (530)
T ss_dssp             SHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            1    35566666666543 4556666666666654       56665       6777777766521222566677777


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcC
Q 043068          339 NGFCKIGKSDEAISLLKEMRARGLKPTV--FSFNAVFRILVENGELDRAILLLKQMPQMDCLPN-FVSYNTIICGLCMAK  415 (526)
Q Consensus       339 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~  415 (526)
                      ..+.+.|++++|..+|+++.+.  .|+.  ..|..++..+.+.|++++|.++|++..+..  |+ ...|...........
T Consensus       329 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~a~~~~~~~  404 (530)
T 2ooe_A          329 DYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCS  404 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHHHHHHHHHT
T ss_pred             HHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHc
Confidence            7777777777777777777664  3332  356666666666777777777777766532  22 122221111111123


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068          416 GRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLL  471 (526)
Q Consensus       416 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~  471 (526)
                      |+.++|..+|++.++..+. +...|..++..+.+.|+.++|..+|++.++.++..|
T Consensus       405 ~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~  459 (530)
T 2ooe_A          405 KDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  459 (530)
T ss_dssp             CCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred             CChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence            6777777777777665322 566777777777777777777777777777665443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.82  E-value=8.9e-18  Score=159.27  Aligned_cols=261  Identities=11%  Similarity=0.006  Sum_probs=173.1

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 043068          128 KLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKM  207 (526)
Q Consensus       128 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  207 (526)
                      .+...+...|++++|+.+|+++....+ .+...+..+...+...|++++|.+.|+++.+..  |.+..++..+...+...
T Consensus        26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~  102 (327)
T 3cv0_A           26 EEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNE  102 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHHHHc
Confidence            334444455555555555555544432 234445555555555555555555555555543  44555555555555555


Q ss_pred             CChhhHHHHHHhC-CCCCC-HHHHH-------------HH-HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043068          208 GMIENAKKVFDVM-TVKPN-LLAYN-------------TM-IN-GFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYG  270 (526)
Q Consensus       208 g~~~~A~~~~~~~-~~~p~-~~~~~-------------~l-i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  270 (526)
                      |++++|.+.++++ ...|+ ...+.             .+ .. .+...|++++|.+.++++.+.... +...+..+...
T Consensus       103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~  181 (327)
T 3cv0_A          103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVL  181 (327)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence            5555555555544 11111 11111             11 22 366778888899988888876433 67788888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 043068          271 LCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEA  350 (526)
Q Consensus       271 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  350 (526)
                      +.+.|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.... +..++..+...|...|++++|
T Consensus       182 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A  259 (327)
T 3cv0_A          182 YNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLA  259 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHH
Confidence            888999999999998887765 556778888888888899999999999888877543 677888888888899999999


Q ss_pred             HHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068          351 ISLLKEMRARGLKP-----------TVFSFNAVFRILVENGELDRAILLLKQMPQ  394 (526)
Q Consensus       351 ~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  394 (526)
                      .+.++++.+.....           +...+..+..++.+.|+.++|..++++..+
T Consensus       260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  314 (327)
T 3cv0_A          260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE  314 (327)
T ss_dssp             HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred             HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            99998887653221           356788888888889999998888877654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.81  E-value=5.7e-16  Score=157.49  Aligned_cols=395  Identities=9%  Similarity=-0.001  Sum_probs=288.5

Q ss_pred             HhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCC--CCHHHHHHHHHH-HHcCCCH
Q 043068           63 YEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNK--LSDFFISKLIKA-YGDRGNV  139 (526)
Q Consensus        63 ~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~-~~~~g~~  139 (526)
                      ...|++++|...|+.++...|      .+...|...+..+.+.|+++.|..+|++...  ++...|..++.. ....|++
T Consensus        23 ~~~~~~~~a~~~~e~al~~~P------~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~   96 (530)
T 2ooe_A           23 AQNQPIDKARKTYERLVAQFP------SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKL   96 (530)
T ss_dssp             HHSSCHHHHHHHHHHHHTTCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTS
T ss_pred             HHhCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccch
Confidence            558999999999999998765      3456799999999999999999999998764  344566655543 3356777


Q ss_pred             HHHHH----HHHHHHhc-CCC-CChhhHHHHHHHHHh---------cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068          140 KAAIF----WFHQAKQI-ENG-ACLYSYNSLLGVLVR---------VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY  204 (526)
Q Consensus       140 ~~A~~----~~~~~~~~-~~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~  204 (526)
                      ++|.+    +|++.... |.. .+...|...+....+         .|+++.|..+|++.++.. .......|.......
T Consensus        97 ~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P-~~~~~~~~~~~~~~e  175 (530)
T 2ooe_A           97 PSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP-MINIEQLWRDYNKYE  175 (530)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC-CTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch-hhhHHHHHHHHHHHH
Confidence            77665    77776543 332 346778887777665         689999999999998731 111124444333211


Q ss_pred             -------------HHcCChhhHHHHHHh-------CC-----CCCC--------HHHHHHHHHHHHhc----CCH----H
Q 043068          205 -------------CKMGMIENAKKVFDV-------MT-----VKPN--------LLAYNTMINGFCKK----GEL----E  243 (526)
Q Consensus       205 -------------~~~g~~~~A~~~~~~-------~~-----~~p~--------~~~~~~li~~~~~~----g~~----~  243 (526)
                                   .+.++++.|..++.+       +.     ++|+        ...|...+......    ++.    +
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~  255 (530)
T 2ooe_A          176 EGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITK  255 (530)
T ss_dssp             HHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHH
T ss_pred             HhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHH
Confidence                         124567777776664       21     3444        24566555443322    232    4


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHcCCCCCHHhHHHHHHHHHHc
Q 043068          244 EAKKCMNEMMNRGCRPNELTYNAMIYGLCI-------NGRVD-------EAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV  309 (526)
Q Consensus       244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  309 (526)
                      ++..+|++.+... +-+...|..++..+.+       .|+++       +|..+|++..+.-.+.+...|..++..+.+.
T Consensus       256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            7788999998863 3367888888888775       69977       8999999998632355788999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHH
Q 043068          310 GKFDQAVGYLRNVMEANMNPD-VKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRI-LVENGELDRAIL  387 (526)
Q Consensus       310 g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~  387 (526)
                      |++++|..+|+++.+..+. + ...|..++..+.+.|++++|.++|++..+.. +.+...|...... +...|+.++|..
T Consensus       335 g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~  412 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK  412 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             CCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHH
Confidence            9999999999999986433 3 3589999999999999999999999998762 1223333332222 346899999999


Q ss_pred             HHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043068          388 LLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGH-NL--DFTMYSCLLKGYCEEGNVENVMQIAHEMV  464 (526)
Q Consensus       388 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  464 (526)
                      +|+...+.. +.+...|..++..+.. .|+.++|..+|++.+..+. .|  ....|...+....+.|+.+.+..+.+++.
T Consensus       413 ~~e~al~~~-p~~~~~~~~~~~~~~~-~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~  490 (530)
T 2ooe_A          413 IFELGLKKY-GDIPEYVLAYIDYLSH-LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  490 (530)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHTT-TTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHC-CCCHHHHHHHHHHHHh-CCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999988742 2246777777777655 4999999999999998753 22  24589888998899999999999999999


Q ss_pred             HcCCC
Q 043068          465 TKKGR  469 (526)
Q Consensus       465 ~~~~~  469 (526)
                      +..+.
T Consensus       491 ~~~p~  495 (530)
T 2ooe_A          491 TAFRE  495 (530)
T ss_dssp             HHTHH
T ss_pred             HHCch
Confidence            98874

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.80  E-value=5.9e-18  Score=163.55  Aligned_cols=233  Identities=9%  Similarity=0.043  Sum_probs=155.5

Q ss_pred             ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHH
Q 043068          157 CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMIN  234 (526)
Q Consensus       157 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~  234 (526)
                      +...+..+...+.+.|++++|++.|+++++..  |.+..+|..+..++.+.|++++|.+.|+++ .. +.+...|..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            45568888889999999999999999999886  778889999999999999999999999887 22 345778888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHhHHHHH
Q 043068          235 GFCKKGELEEAKKCMNEMMNRGCR---------PNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKD--NVSTHKSML  303 (526)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~---------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li  303 (526)
                      +|...|++++|++.|+++.+....         .....+..+...+.+.|++++|+.+++++.+.. +.  +..++..+.
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~  220 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHH
Confidence            888999999999998888775211         001222334556666677777777777766553 22  456666666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 043068          304 KGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELD  383 (526)
Q Consensus       304 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  383 (526)
                      ..|.+.|++++|...++++.+..+. +..+|..+...|...|++++|+..|+++.+.. +.+..++..+..+|.+.|+++
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence            6666666666666666666665433 55566666666666666666666666665542 123455556666666666666


Q ss_pred             HHHHHHHHccc
Q 043068          384 RAILLLKQMPQ  394 (526)
Q Consensus       384 ~a~~~~~~~~~  394 (526)
                      +|...|+++.+
T Consensus       299 ~A~~~~~~al~  309 (365)
T 4eqf_A          299 EAVSNFLTALS  309 (365)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666665554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.80  E-value=1.8e-16  Score=147.45  Aligned_cols=273  Identities=11%  Similarity=0.051  Sum_probs=207.4

Q ss_pred             HHHhCCCHHHHHHHHHhcCCCCHH----HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 043068          101 VLLSHSLISIAASLLKNSNKLSDF----FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKL  176 (526)
Q Consensus       101 ~~~~~~~~~~a~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  176 (526)
                      -..-.|+++.|...+++....++.    ....+.++|...|++++|+..++.   . ..|+..++..+...+...++.++
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~   83 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDA   83 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHH
Confidence            344568888888888776555443    234577889999999999876654   2 23567788888888999999999


Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043068          177 AEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRG  256 (526)
Q Consensus       177 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  256 (526)
                      |++.+++++..+..|.+...+..+..++.+.|++++|++.+++   +.+...+..++..+.+.|++++|.+.|+++.+..
T Consensus        84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~  160 (291)
T 3mkr_A           84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD  160 (291)
T ss_dssp             HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence            9999999887652366778888888999999999999999988   5678888899999999999999999999998873


Q ss_pred             CCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043068          257 CRPNELTY---NAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKS  333 (526)
Q Consensus       257 ~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  333 (526)
                        |+....   ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+..+. +..+
T Consensus       161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~  236 (291)
T 3mkr_A          161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPET  236 (291)
T ss_dssp             --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred             --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH
Confidence              453221   122333444588999999999998774 678888999999999999999999999998887654 7788


Q ss_pred             HHHHHHHHHhcCChhH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043068          334 YEVVINGFCKIGKSDE-AISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLL  389 (526)
Q Consensus       334 ~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  389 (526)
                      +..++..+...|+.++ +.++++++.+.  .|+..   .+.....+.+.++++..-|
T Consensus       237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~---~~~d~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          237 LINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP---FIKEYRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH---HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh---HHHHHHHHHHHHHHHHHHc
Confidence            8888888888998865 56888888775  45542   2334455555666555433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.79  E-value=2.2e-17  Score=156.57  Aligned_cols=260  Identities=8%  Similarity=-0.031  Sum_probs=202.4

Q ss_pred             hHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 043068           94 CYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVR  170 (526)
Q Consensus        94 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~  170 (526)
                      .+..++..+...|++++|..++++..   +.+...+..+...|...|++++|.+.|+++....+ .+..++..+...+..
T Consensus        23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN  101 (327)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHH
Confidence            46677777788888888888777643   33455677788888888888888888888877653 457778888888888


Q ss_pred             cCChhHHHHHHHHHHHcCCCCCCHHHHHHH--------------HH-HHHHcCChhhHHHHHHhC--CCCCCHHHHHHHH
Q 043068          171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTM--------------IR-GYCKMGMIENAKKVFDVM--TVKPNLLAYNTMI  233 (526)
Q Consensus       171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li  233 (526)
                      .|++++|.+.++++.+..  |.+...+..+              .. .+...|++++|.+.++++  ..+.+...+..+.
T Consensus       102 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  179 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG  179 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            888888888888888765  4444444333              33 367778889999988887  2234677888899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHH
Q 043068          234 NGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFD  313 (526)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  313 (526)
                      ..+.+.|++++|.+.++++.+... .+..++..+...+...|++++|...++++.+.. +.+..++..+...|.+.|+++
T Consensus       180 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~  257 (327)
T 3cv0_A          180 VLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD  257 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence            999999999999999999887743 367788889999999999999999999988765 566788889999999999999


Q ss_pred             HHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068          314 QAVGYLRNVMEANMNP-----------DVKSYEVVINGFCKIGKSDEAISLLKEMR  358 (526)
Q Consensus       314 ~A~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~  358 (526)
                      +|.+.++++.+.....           +...|..+..++.+.|++++|..++++..
T Consensus       258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            9999999988764332           46788899999999999999998887543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.78  E-value=1.5e-16  Score=148.07  Aligned_cols=274  Identities=11%  Similarity=0.050  Sum_probs=216.6

Q ss_pred             HHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHH
Q 043068           61 VIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVK  140 (526)
Q Consensus        61 ~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~  140 (526)
                      -....|+++.|+..++......|.+     .......+++++...|+++.|...++....++...+..+...+...|+.+
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~~~p~~-----~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKPSSPER-----DVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCSHHH-----HHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCchh-----hHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHH
Confidence            3445799999999998766544321     12345667899999999999999887764445557888999999999999


Q ss_pred             HHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHh
Q 043068          141 AAIFWFHQAKQIENGA-CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDV  219 (526)
Q Consensus       141 ~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  219 (526)
                      +|++.++++...+..| +...+..+..++...|++++|++.+++       +.+..++..++..+.+.|++++|.+.|++
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  155 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKK  155 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            9999999998765334 566777888999999999999999987       46889999999999999999999999999


Q ss_pred             C-CCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 043068          220 M-TVKPNLLAY---NTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN  295 (526)
Q Consensus       220 ~-~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~  295 (526)
                      + ...|+....   ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|+..++++.+.. +.+
T Consensus       156 ~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~  233 (291)
T 3mkr_A          156 MQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH  233 (291)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence            8 334553221   22334455669999999999999988 34588899999999999999999999999998876 678


Q ss_pred             HHhHHHHHHHHHHcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043068          296 VSTHKSMLKGLCVVGKFDQ-AVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISL  353 (526)
Q Consensus       296 ~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  353 (526)
                      ..++..++..+...|+.++ +.++++++.+.++. +..    +.+...+.+.++++..-
T Consensus       234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~----~~d~~~~~~~fd~~~~~  287 (291)
T 3mkr_A          234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPF----IKEYRAKENDFDRLVLQ  287 (291)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHH----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChH----HHHHHHHHHHHHHHHHH
Confidence            8899999999999999876 67899999987544 332    33344555555555443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.78  E-value=1.3e-17  Score=158.75  Aligned_cols=293  Identities=13%  Similarity=0.176  Sum_probs=139.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCC
Q 043068           58 VTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRG  137 (526)
Q Consensus        58 l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g  137 (526)
                      +..++...|+.++|..++++.-    .|       .+|..++.++.+.|++++|.+.|.+.  .++..|..++..+...|
T Consensus         9 ~~~ll~~~~~ld~A~~fae~~~----~~-------~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g   75 (449)
T 1b89_A            9 VQVLIEHIGNLDRAYEFAERCN----EP-------AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSG   75 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHccCHHHHHHHHHhCC----Ch-------HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCC
Confidence            3444556788999999999872    11       26899999999999999999999875  45558888999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHH
Q 043068          138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVF  217 (526)
Q Consensus       138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  217 (526)
                      ++++|+..++..++.  .+++.+.+.++.+|.+.|+++++.++++        .|+..+|+.+...|...|.+++|...|
T Consensus        76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y  145 (449)
T 1b89_A           76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLY  145 (449)
T ss_dssp             -----------------------------------CHHHHTTTTT--------CC----------------CTTTHHHHH
T ss_pred             CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999988877653  2567889999999999999999988874        357779999999999999999999999


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 043068          218 DVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVS  297 (526)
Q Consensus       218 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  297 (526)
                      ..+      ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......+     ...+.
T Consensus       146 ~~a------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad  208 (449)
T 1b89_A          146 NNV------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHAD  208 (449)
T ss_dssp             HHT------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHH
T ss_pred             HHh------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHh
Confidence            987      37999999999999999999999998      27899999999999999999996655542     23344


Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCC------CHHHHH
Q 043068          298 THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA-RGLKP------TVFSFN  370 (526)
Q Consensus       298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p------~~~~~~  370 (526)
                      -...++..|.+.|++++|..+++..+... +-....|+-+...|++- ++++..+.++.-.. .+++|      +...|.
T Consensus       209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~  286 (449)
T 1b89_A          209 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWA  286 (449)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHH
T ss_pred             hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            45578999999999999999999998776 44778888888888875 34444444433322 22333      456788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHc
Q 043068          371 AVFRILVENGELDRAILLLKQM  392 (526)
Q Consensus       371 ~li~~~~~~g~~~~a~~~~~~~  392 (526)
                      .+...|.+.++++.|....-+-
T Consensus       287 e~~~ly~~~~e~d~A~~tm~~h  308 (449)
T 1b89_A          287 ELVFLYDKYEEYDNAIITMMNH  308 (449)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHhhchHHHHHHHHHhC
Confidence            8999999999999988755443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.78  E-value=2.2e-18  Score=164.07  Aligned_cols=285  Identities=14%  Similarity=0.076  Sum_probs=134.0

Q ss_pred             HHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 043068          101 VLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEF  180 (526)
Q Consensus       101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  180 (526)
                      ++-+.|++++|.+.+++...+  .+|..|+.++.+.|++++|++.|.+.      +|..+|..++..+...|++++|++.
T Consensus        12 ll~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y   83 (449)
T 1b89_A           12 LIEHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY   83 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            344568899999999998543  58999999999999999999999753      5677999999999999999999997


Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043068          181 FHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN  260 (526)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  260 (526)
                      ++...+.   .++..+.+.++.+|.+.|+++++.++++    .|+..+|+.++..|...|.+++|...|..+        
T Consensus        84 l~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------  148 (449)
T 1b89_A           84 LQMARKK---ARESYVETELIFALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------  148 (449)
T ss_dssp             ----------------------------CHHHHTTTTT----CC----------------CTTTHHHHHHHT--------
T ss_pred             HHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence            7766654   4567889999999999999999998886    478889999999999999999999999977        


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043068          261 ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVING  340 (526)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~  340 (526)
                       ..|..++.++.+.|++++|.+.++++      .++.+|..++.+|...|+++.|......+     ..++.-...++..
T Consensus       149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~  216 (449)
T 1b89_A          149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINY  216 (449)
T ss_dssp             -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHH
T ss_pred             -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHH
Confidence             37999999999999999999999988      37899999999999999999996655442     2344446679999


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHcccCCCCc------CHHHHHHHHHHHH
Q 043068          341 FCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVE--NGELDRAILLLKQMPQMDCLP------NFVSYNTIICGLC  412 (526)
Q Consensus       341 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~p------~~~~~~~ll~~~~  412 (526)
                      |.+.|.+++|+.+++...... +-....|+.|..+|++  .+++.+.++.|..-..  ++|      +...|.-+.-.|+
T Consensus       217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in--i~k~~~~~~~~~~w~e~~~ly~  293 (449)
T 1b89_A          217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYD  293 (449)
T ss_dssp             HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC--HHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988654 4456677777777765  3455555555554333  333      3556777877777


Q ss_pred             hcCCCHHHHHHH
Q 043068          413 MAKGRMQDVEDL  424 (526)
Q Consensus       413 ~~~g~~~~a~~~  424 (526)
                      .. ++++.|...
T Consensus       294 ~~-~e~d~A~~t  304 (449)
T 1b89_A          294 KY-EEYDNAIIT  304 (449)
T ss_dssp             HT-TCHHHHHHH
T ss_pred             hh-chHHHHHHH
Confidence            65 899988653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.76  E-value=5.5e-16  Score=155.20  Aligned_cols=361  Identities=11%  Similarity=-0.008  Sum_probs=246.2

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHhcCCCCCC---CCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC-----------C
Q 043068           55 SNIVTKVIYEQTNPYHALFFFNWASNPNPNP---NKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN-----------K  120 (526)
Q Consensus        55 ~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----------~  120 (526)
                      .+.+..++..+|++++|++.|+.+.+..+..   ........+|..++.++...|++++|...+++..           .
T Consensus        54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~  133 (472)
T 4g1t_A           54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI  133 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch
Confidence            3678888999999999999999886531100   0122345578999999999999999998887532           1


Q ss_pred             CCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCCCCHH
Q 043068          121 LSDFFISKLIKAYGD--RGNVKAAIFWFHQAKQIENGACLYSYNSLLGV---LVRVNSIKLAEEFFHQIVKENVVPPDVS  195 (526)
Q Consensus       121 ~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~  195 (526)
                      ..+.++..+..++..  .+++++|++.|++.....+ .+...+..+..+   +...++.++|++.+++.++..  |.+..
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~~~  210 (472)
T 4g1t_A          134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDNQY  210 (472)
T ss_dssp             CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSCHH
T ss_pred             hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--CcchH
Confidence            234566666555554  4579999999999998774 345555555544   445688899999999999886  77888


Q ss_pred             HHHHHHHHHHH----cCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043068          196 TYTTMIRGYCK----MGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIY  269 (526)
Q Consensus       196 ~~~~li~~~~~----~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  269 (526)
                      ++..+...+..    .|++++|.+.+++.  ..+.+...+..+...|...|++++|+..|++..+.... +..++..+..
T Consensus       211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~  289 (472)
T 4g1t_A          211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGC  289 (472)
T ss_dssp             HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHH
Confidence            88877766655    46788999999886  22456778999999999999999999999999987433 5666776666


Q ss_pred             HHHHc-------------------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 043068          270 GLCIN-------------------GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPD  330 (526)
Q Consensus       270 ~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~  330 (526)
                      +|...                   +.+++|...+++..+.. +.+..++..+...|...|++++|+..|++..+....+.
T Consensus       290 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~  368 (472)
T 4g1t_A          290 CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV  368 (472)
T ss_dssp             HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence            55432                   23567888888887765 56677889999999999999999999999998754432


Q ss_pred             HH--HHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHH
Q 043068          331 VK--SYEVVIN-GFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTI  407 (526)
Q Consensus       331 ~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  407 (526)
                      ..  .+..+.. .+...|+.++|+..|++..+.  .|+......         ..+.+.++++...+.. +.+..+|..+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~L  436 (472)
T 4g1t_A          369 AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVL  436 (472)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            21  2233332 345779999999999999876  455433222         2234445555555432 2345677777


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHCCC
Q 043068          408 ICGLCMAKGRMQDVEDLVDRMIRSGH  433 (526)
Q Consensus       408 l~~~~~~~g~~~~a~~~~~~~~~~~~  433 (526)
                      -..+... |++++|.+.|++.++.+.
T Consensus       437 G~~~~~~-g~~~~A~~~y~kALe~~~  461 (472)
T 4g1t_A          437 AFLQELN-EKMQQADEDSERGLESGS  461 (472)
T ss_dssp             HHHHHHH-HHCC--------------
T ss_pred             HHHHHHc-CCHHHHHHHHHHHHhcCC
Confidence            6666555 999999999999998764

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.76  E-value=1.7e-18  Score=177.59  Aligned_cols=118  Identities=10%  Similarity=0.065  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 043068          226 LLAYNTMINGFCKKGELEEAKKCMNEMMN---RGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSM  302 (526)
Q Consensus       226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  302 (526)
                      ..+|+++|++||+.|++++|.++|++|.+   .|+.||..|||+||++||+.|++++|.++|++|.+.|+.||..||+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            44566666666666666666666655542   356666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043068          303 LKGLCVVGK-FDQAVGYLRNVMEANMNPDVKSYEVVINGFCK  343 (526)
Q Consensus       303 i~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~  343 (526)
                      |.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.++.+
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR  248 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR  248 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence            666666665 35566666666666666666666666554433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.76  E-value=3.1e-14  Score=150.87  Aligned_cols=356  Identities=10%  Similarity=0.127  Sum_probs=184.2

Q ss_pred             HHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcC
Q 043068           57 IVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDR  136 (526)
Q Consensus        57 ~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~  136 (526)
                      ...+.+...|.+.+|+.+++.+.-. |  ..|+.....-+.++....+. +.....+.+.+....+   ...+...+...
T Consensus       990 ~~vKaf~~aglp~EaieLLEKivl~-~--s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A          990 VTVKAFMTADLPNELIELLEKIVLD-N--SVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISN 1062 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHcC-C--CcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhC
Confidence            4566777899999999999999833 3  22333333334344444333 2233333333222111   22344455555


Q ss_pred             CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHH
Q 043068          137 GNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKV  216 (526)
Q Consensus       137 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  216 (526)
                      |.+++|..+|++..     ......+.++   -..+++++|.++.+++       .+..+|..+..++.+.|++++|.+.
T Consensus      1063 glyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A         1063 ELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred             CCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            55555555555531     1111112221   1445555555555433       1234555555555555555555555


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 043068          217 FDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNV  296 (526)
Q Consensus       217 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~  296 (526)
                      |.+.   .|...|..++.++.+.|++++|.+.|...++..  ++....+.++.+|++.+++++...+.    +   .++.
T Consensus      1128 YiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A         1128 YIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred             HHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence            5543   244455555555555555555555555444432  22222223445555555544322221    1   2333


Q ss_pred             HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----------------
Q 043068          297 STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR----------------  360 (526)
Q Consensus       297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------------  360 (526)
                      ..+..+...|...|++++|..+|...         ..|..+...|++.|++++|++.+++....                
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHH
Confidence            34444555555555555555555442         13445555555555555555444433211                


Q ss_pred             --------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHC
Q 043068          361 --------GLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMA-KGRMQDVEDLVDRMIRS  431 (526)
Q Consensus       361 --------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-~g~~~~a~~~~~~~~~~  431 (526)
                              ++..+...+..++..|.+.|.+++|+.+++...... +-....|+-+...+++. .+++.++.++|..-+. 
T Consensus      1267 ~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin- 1344 (1630)
T 1xi4_A         1267 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN- 1344 (1630)
T ss_pred             HHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-
Confidence                    112245566788888999999999999998887643 22334454444444432 1344444444443321 


Q ss_pred             CCCC------CHHHHHHHHHHHHhCCCHHHHHH
Q 043068          432 GHNL------DFTMYSCLLKGYCEEGNVENVMQ  458 (526)
Q Consensus       432 ~~~p------~~~~~~~l~~~~~~~g~~~~a~~  458 (526)
                       +++      +...|..++-.|.+.|+++.|..
T Consensus      1345 -i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A         1345 -IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred             -cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence             222      56789999999999999999984

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.75  E-value=1.6e-18  Score=177.78  Aligned_cols=129  Identities=15%  Similarity=0.166  Sum_probs=117.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043068          260 NELTYNAMIYGLCINGRVDEAKMLMAKMR---LNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEV  336 (526)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  336 (526)
                      -..||+++|++||+.|++++|.++|++|.   +.|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||..|||+
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            45789999999999999999999998876   458999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 043068          337 VINGFCKIGKS-DEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQM  392 (526)
Q Consensus       337 li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~  392 (526)
                      +|.++|+.|+. ++|.++|++|.+.|+.||..+|++++.++.+.    .+++..+++
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv  258 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV  258 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh
Confidence            99999999985 78999999999999999999999999877664    444444554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.75  E-value=3e-14  Score=150.90  Aligned_cols=352  Identities=14%  Similarity=0.073  Sum_probs=263.2

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHH-HhCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043068           55 SNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVL-LSHSLISIAASLLKNSNKLSDFFISKLIKAY  133 (526)
Q Consensus        55 ~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~  133 (526)
                      ...++.++...|.+++|..+|+.+..              +...+..+ -..+++++|.++.++.  .++.+|..+..++
T Consensus      1052 ~~eIA~Iai~lglyEEAf~IYkKa~~--------------~~~A~~VLie~i~nldrAiE~Aerv--n~p~vWsqLAKAq 1115 (1630)
T 1xi4_A         1052 APDIANIAISNELFEEAFAIFRKFDV--------------NTSAVQVLIEHIGNLDRAYEFAERC--NEPAVWSQLAKAQ 1115 (1630)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhHHHHHHHHHhc--CCHHHHHHHHHHH
Confidence            45567777778999999999998631              12212223 3678899999998866  3477888999999


Q ss_pred             HcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhH
Q 043068          134 GDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENA  213 (526)
Q Consensus       134 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  213 (526)
                      ...|++++|++.|.+.      .|...|..++..+.+.|++++|.+.|....+..   ++....+.++.+|++.+++++.
T Consensus      1116 l~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A         1116 LQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred             HhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHH
Confidence            9999999999999764      467788889999999999999999999877654   3333444599999999998865


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 043068          214 KKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFK  293 (526)
Q Consensus       214 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  293 (526)
                      ..+.+    .++...|..+...|...|++++|..+|...         ..|..+..++++.|++++|.+.+++.      
T Consensus      1187 e~fI~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------ 1247 (1630)
T 1xi4_A         1187 EEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------ 1247 (1630)
T ss_pred             HHHHh----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------
Confidence            54432    557778888999999999999999999985         47999999999999999999999886      


Q ss_pred             CCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043068          294 DNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVF  373 (526)
Q Consensus       294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li  373 (526)
                      .+..+|..+..+|...|++..|......+     ..+...+..++..|.+.|.+++|+.+++...... +-....|.-+.
T Consensus      1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELa 1321 (1630)
T 1xi4_A         1248 NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 1321 (1630)
T ss_pred             CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHH
Confidence            45688999999999999999998766543     2356677899999999999999999998877553 22444666666


Q ss_pred             HHHHH--cCCHHHHHHHHHHcccCCCCc------CHHHHHHHHHHHHhcCCCHHHHHHHH-------------HHHHHCC
Q 043068          374 RILVE--NGELDRAILLLKQMPQMDCLP------NFVSYNTIICGLCMAKGRMQDVEDLV-------------DRMIRSG  432 (526)
Q Consensus       374 ~~~~~--~g~~~~a~~~~~~~~~~~~~p------~~~~~~~ll~~~~~~~g~~~~a~~~~-------------~~~~~~~  432 (526)
                      ..|++  -++..++.++|..-..  ++|      +...|.-++-.|++. |+++.|....             +..+.  
T Consensus      1322 iLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~-~e~dnA~~tm~~h~~~a~~~~~Fk~~i~-- 1396 (1630)
T 1xi4_A         1322 ILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKY-EEYDNAIITMMNHPTDAWKEGQFKDIIT-- 1396 (1630)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHhccHhhhhhHHHHHHhc--
Confidence            66654  4455566666654433  222      456688888777765 8999887322             22221  


Q ss_pred             CCCCHHHHHHHHHHHHhCC---------------CHHHHHHHHH
Q 043068          433 HNLDFTMYSCLLKGYCEEG---------------NVENVMQIAH  461 (526)
Q Consensus       433 ~~p~~~~~~~l~~~~~~~g---------------~~~~a~~~~~  461 (526)
                      ...++..|...+.-|...+               +.+++.++|+
T Consensus      1397 kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A         1397 KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred             ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence            2336777777777776666               6777766665

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.71  E-value=3.5e-15  Score=136.05  Aligned_cols=221  Identities=11%  Similarity=0.056  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC-------HHHH
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD-------VSTY  197 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~  197 (526)
                      .+..+...+...|++++|+..|+++....  .+...+..+...+...|++++|++.+++..+..  |.+       ..++
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cccccchHHHHHHH
Confidence            45556666666677777777777666655  556666666666777777777777766666543  111       3555


Q ss_pred             HHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 043068          198 TTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGR  276 (526)
Q Consensus       198 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  276 (526)
                      ..+...+.+.|++++|.+.|++. ...|+.       ..+.+.|++++|...++++...... +...+..+...+...|+
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcC
Confidence            55555555666666665555554 222332       2233445555555555555543211 23344445555555555


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043068          277 VDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKE  356 (526)
Q Consensus       277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  356 (526)
                      +++|...++++.+.. +.+..++..+...|.+.|++++|...+++..+..+. +...|..+...+...|++++|...+++
T Consensus       155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            555555555554433 334444555555555555555555555555444322 344444555555555555555555554


Q ss_pred             HHH
Q 043068          357 MRA  359 (526)
Q Consensus       357 m~~  359 (526)
                      ..+
T Consensus       233 a~~  235 (258)
T 3uq3_A          233 ART  235 (258)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.70  E-value=6e-15  Score=134.50  Aligned_cols=227  Identities=10%  Similarity=0.060  Sum_probs=187.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHhH
Q 043068          226 LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGF--KDN----VSTH  299 (526)
Q Consensus       226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~  299 (526)
                      ...|..+...+...|++++|+..|++..+..  .+...+..+..++...|++++|...++++.+...  .++    ..++
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            4567888888999999999999999998887  6788889999999999999999999998876431  112    5788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 043068          300 KSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVEN  379 (526)
Q Consensus       300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~  379 (526)
                      ..+...+...|++++|...++++.+..  |+.       ..+...|++++|...++++.... +.+...+..+...+...
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence            889999999999999999999998864  342       34667788999999999998762 22456788888999999


Q ss_pred             CCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 043068          380 GELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQI  459 (526)
Q Consensus       380 g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  459 (526)
                      |++++|.+.++++.+.. +.+...+..+...+... |++++|...++++++..+. +...|..+..+|.+.|++++|.+.
T Consensus       153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~  229 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKL-MSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET  229 (258)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence            99999999999988743 23466777777776665 9999999999999987544 688999999999999999999999


Q ss_pred             HHHHHHcC
Q 043068          460 AHEMVTKK  467 (526)
Q Consensus       460 ~~~m~~~~  467 (526)
                      +++.++..
T Consensus       230 ~~~a~~~~  237 (258)
T 3uq3_A          230 LDAARTKD  237 (258)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhC
Confidence            99999887

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.67  E-value=7.3e-15  Score=130.41  Aligned_cols=207  Identities=15%  Similarity=0.089  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 043068          123 DFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIR  202 (526)
Q Consensus       123 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~  202 (526)
                      +..+..+...+.+.|++++|+..|++..+..+ .+...+..+...+.+.|++++|+..|++.++..  |.+...+..+..
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~   81 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLSE   81 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHH
Confidence            34455566666667777777777776666553 446666666666777777777777777776665  556666666666


Q ss_pred             HHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043068          203 GYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKM  282 (526)
Q Consensus       203 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~  282 (526)
                      ++.+.+..            ...         .....|++++|+..|++..+.... +...+..+..++...|++++|+.
T Consensus        82 ~~~~~~~~------------~~~---------~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~  139 (217)
T 2pl2_A           82 AYVALYRQ------------AED---------RERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEA  139 (217)
T ss_dssp             HHHHHHHT------------CSS---------HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHhhhh------------hhh---------hcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHH
Confidence            66665100            000         001115555555555555544222 34445555555555555555555


Q ss_pred             HHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068          283 LMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEM  357 (526)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  357 (526)
                      .|+++.+..  .+...+..+...|...|++++|...|++..+..+. +...+..+...+...|++++|+..+++.
T Consensus       140 ~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          140 SLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            555555444  44455555555555555555555555555554332 4445555555555555555555555544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.67  E-value=1.1e-14  Score=129.38  Aligned_cols=199  Identities=12%  Similarity=0.058  Sum_probs=140.5

Q ss_pred             CCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043068          191 PPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMI  268 (526)
Q Consensus       191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (526)
                      |++...+..+...+.+.|++++|...|++. .. +.+...+..+...+.+.|++++|+..|++..+.... +...+..+.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg   80 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS   80 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence            445556666666666666666666666664 22 234556666666666666666777666666665322 455666666


Q ss_pred             HHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043068          269 YGLCIN-----------GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVV  337 (526)
Q Consensus       269 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  337 (526)
                      ..+.+.           |++++|+..+++..+.. +.+...+..+...+...|++++|+..|++..+.+  .+...+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l  157 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence            666666           99999999999998875 5678899999999999999999999999999987  588999999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068          338 INGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQ  394 (526)
Q Consensus       338 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  394 (526)
                      ...|...|++++|+..|++..+.. +-+...+..+...+.+.|++++|++.+++...
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            999999999999999999998863 23567888999999999999999999987654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.66  E-value=5.4e-15  Score=136.32  Aligned_cols=245  Identities=13%  Similarity=-0.020  Sum_probs=156.0

Q ss_pred             cCCCHHHHHHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChh
Q 043068          135 DRGNVKAAIFWFHQAKQIENG---ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIE  211 (526)
Q Consensus       135 ~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  211 (526)
                      ..|++++|+..|+++......   .+..++..+...+...|++++|.+.|+++++..  |.+..+|..+...+...|+++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence            456778888888877765321   235667777778888888888888888887775  667777888888888888888


Q ss_pred             hHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068          212 NAKKVFDVM-TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRL  289 (526)
Q Consensus       212 ~A~~~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  289 (526)
                      +|.+.|+++ .. +.+...+..+..++.+.|++++|.+.|+++.+.  .|+.......+..+...|++++|...+++...
T Consensus        95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  172 (275)
T 1xnf_A           95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  172 (275)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            888877776 22 235667777777777888888888888877765  33433444444455666777777777776665


Q ss_pred             cCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 043068          290 NGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNP---DVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV  366 (526)
Q Consensus       290 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~  366 (526)
                      .. +++...+ .++..+...++.++|...+++..+.....   +..++..+...|...|++++|...|+++.+.  .|+.
T Consensus       173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~  248 (275)
T 1xnf_A          173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN  248 (275)
T ss_dssp             HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred             cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence            43 3333333 35566666667777777777665432110   1355666667777777777777777777654  2322


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHH
Q 043068          367 FSFNAVFRILVENGELDRAILLL  389 (526)
Q Consensus       367 ~~~~~li~~~~~~g~~~~a~~~~  389 (526)
                        +.....++...|++++|++.+
T Consensus       249 --~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          249 --FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             --CHHHHHHHHHHHHHHHC----
T ss_pred             --HHHHHHHHHHHHHHHhhHHHH
Confidence              222244555666666666554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.66  E-value=2.2e-14  Score=142.21  Aligned_cols=377  Identities=11%  Similarity=0.012  Sum_probs=239.1

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCH---HHHHHHHHhcCCCCHHHHHHHHHH
Q 043068           56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLI---SIAASLLKNSNKLSDFFISKLIKA  132 (526)
Q Consensus        56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~li~~  132 (526)
                      ..+.....+.|++++|++.|+.+.+.+.        ..++..++.++...|..   ++|..++++....++..+..|...
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~--------~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~   78 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAELGY--------SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRL   78 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTC--------CTGGGTCC----------------------------CHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3567777889999999999999875431        12345566667667777   899999998776666666677775


Q ss_pred             HHcCC-----CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068          133 YGDRG-----NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIK---LAEEFFHQIVKENVVPPDVSTYTTMIRGY  204 (526)
Q Consensus       133 ~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~li~~~  204 (526)
                      +...|     ++++|+.+|++....+.   ...+..|...|...+..+   .+.+.+......|    +...+..|...|
T Consensus        79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y  151 (452)
T 3e4b_A           79 LAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLY  151 (452)
T ss_dssp             HHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHH
T ss_pred             HHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHH
Confidence            55555     78899999999887664   347777888888766543   4555566665555    345777788888


Q ss_pred             HHcCChhhHHHH----HHhC-CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--
Q 043068          205 CKMGMIENAKKV----FDVM-TVKPNLLAYNTMINGFCKKG---ELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCIN--  274 (526)
Q Consensus       205 ~~~g~~~~A~~~----~~~~-~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--  274 (526)
                      ...+.++++...    ++.. ...|+  .+..|...|.+.|   +.++|++.|++..+.|.. +...+..+...|...  
T Consensus       152 ~~~~~~~~~~~~a~~~~~~a~~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~  228 (452)
T 3e4b_A          152 RTQGTYDQHLDDVERICKAALNTTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATL  228 (452)
T ss_dssp             HHHTCGGGGHHHHHHHHHHHTTTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGG
T ss_pred             HcCCCcccCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCC
Confidence            888866555444    4433 22333  7788888888888   889999999998888744 555556666667554  


Q ss_pred             --CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----
Q 043068          275 --GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKG-L--CVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIG----  345 (526)
Q Consensus       275 --g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----  345 (526)
                        +++++|..+|++..    +.+...+..+... +  ...+++++|..+|++..+.|   +...+..+...|. .|    
T Consensus       229 ~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~  300 (452)
T 3e4b_A          229 GTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVP  300 (452)
T ss_dssp             SSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSC
T ss_pred             CCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCC
Confidence              68899999998876    3455666667766 3  45788999999999888876   6677777777776 45    


Q ss_pred             -ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc---CCC
Q 043068          346 -KSDEAISLLKEMRARGLKPTVFSFNAVFRILVE----NGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMA---KGR  417 (526)
Q Consensus       346 -~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~g~  417 (526)
                       ++++|++.|++.. .|   +...+..|...|..    ..+.++|...|++..+.|. ++  ....+-..|...   ..+
T Consensus       301 ~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~G~g~~~d  373 (452)
T 3e4b_A          301 ADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFSQGKGTKPD  373 (452)
T ss_dssp             CCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHHSCTTBCCC
T ss_pred             CCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHHhCCCCCCC
Confidence             8889999988877 43   55666667666665    3488899999988887663 32  233333333321   247


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043068          418 MQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTK  466 (526)
Q Consensus       418 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  466 (526)
                      .++|..++++..+.|.. +.......+......++.++|.++.++..+.
T Consensus       374 ~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~  421 (452)
T 3e4b_A          374 PLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELAA  421 (452)
T ss_dssp             HHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            88888888888887743 2222222222222334566677766665554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.65  E-value=6.9e-14  Score=127.13  Aligned_cols=205  Identities=10%  Similarity=0.010  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043068          264 YNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCK  343 (526)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~  343 (526)
                      +..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|.+.++++.+.... +...+..+...|..
T Consensus        40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~  117 (252)
T 2ho1_A           40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLYE  117 (252)
T ss_dssp             HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHH
Confidence            3334444444444444444444444332 233444444455555555555555555555444322 44455555555666


Q ss_pred             cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHH
Q 043068          344 IGKSDEAISLLKEMRARGLKP-TVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVE  422 (526)
Q Consensus       344 ~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~  422 (526)
                      .|++++|++.++++.+.+..| +...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+... |++++|.
T Consensus       118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-g~~~~A~  195 (252)
T 2ho1_A          118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKE-REYVPAR  195 (252)
T ss_dssp             TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred             HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc-CCHHHHH
Confidence            666666666666655422223 33455556666666666666666666665532 12345555555555554 7777777


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccch
Q 043068          423 DLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKL  473 (526)
Q Consensus       423 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  473 (526)
                      ..++++++... .+...+..+...+.+.|++++|.+.++++.+..+..+..
T Consensus       196 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  245 (252)
T 2ho1_A          196 QYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY  245 (252)
T ss_dssp             HHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred             HHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence            77777776543 356677777777777788888888888877777655543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.65  E-value=7.3e-13  Score=122.03  Aligned_cols=225  Identities=6%  Similarity=-0.069  Sum_probs=177.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 043068          225 NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCI----NGRVDEAKMLMAKMRLNGFKDNVSTHK  300 (526)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~  300 (526)
                      +..++..+...+...|++++|++.|++..+.+   +...+..+...|..    .+++++|..+|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            45667777778888888888888888887732   45677777778888    888888888888887765   567777


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043068          301 SMLKGLCV----VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCK----IGKSDEAISLLKEMRARGLKPTVFSFNAV  372 (526)
Q Consensus       301 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  372 (526)
                      .+...|..    .+++++|+..|++..+.+   +...+..+...|..    .+++++|+..|++..+.+   +...+..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            78888888    888888888888888764   67778888888888    888888888888888765   55667777


Q ss_pred             HHHHHH----cCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043068          373 FRILVE----NGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCM----AKGRMQDVEDLVDRMIRSGHNLDFTMYSCLL  444 (526)
Q Consensus       373 i~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~  444 (526)
                      ...|..    .+++++|+..|++..+.+   +...+..+-..+..    . +++++|.+.+++..+.+   +...+..+.
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~---~~~a~~~l~  225 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGAT-KNFKEALARYSKACELE---NGGGCFNLG  225 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSC-CCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence            777877    888999999988888754   34555555555554    4 89999999999998865   367788888


Q ss_pred             HHHHh----CCCHHHHHHHHHHHHHcCC
Q 043068          445 KGYCE----EGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       445 ~~~~~----~g~~~~a~~~~~~m~~~~~  468 (526)
                      ..|.+    .|++++|.+.+++..+.++
T Consensus       226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~  253 (273)
T 1ouv_A          226 AMQYNGEGVTRNEKQAIENFKKGCKLGA  253 (273)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence            88988    8999999999999999887

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.65  E-value=1.1e-13  Score=125.81  Aligned_cols=197  Identities=14%  Similarity=0.040  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 043068          124 FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRG  203 (526)
Q Consensus       124 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~  203 (526)
                      ..+..+...|...|++++|++.|+++....+ .+...+..+...+...|++++|.+.|+++.+..  +.+..++..+...
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~  114 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHH
Confidence            3556666677777777777777777766543 346666667777777777777777777776664  4566666666666


Q ss_pred             HHHcCChhhHHHHHHhC-C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 043068          204 YCKMGMIENAKKVFDVM-T--VKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDE  279 (526)
Q Consensus       204 ~~~~g~~~~A~~~~~~~-~--~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  279 (526)
                      +...|++++|.+.++++ .  ..| +...+..+...+...|++++|.+.|++..+.... +...+..+...+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence            66666666666666655 2  223 3345555556666666666666666665554321 34555555555555555555


Q ss_pred             HHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068          280 AKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA  325 (526)
Q Consensus       280 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  325 (526)
                      |...++++.+.. +.+...+..+...+.+.|+.++|.+.++++.+.
T Consensus       194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            555555555432 334444555555555555555555555555544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.64  E-value=2.1e-14  Score=132.15  Aligned_cols=232  Identities=12%  Similarity=0.012  Sum_probs=104.5

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 043068          128 KLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKM  207 (526)
Q Consensus       128 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  207 (526)
                      .....+...|++++|+..|+++.+..+ .+...+..+...+...|++++|++.+++.++..   ++...           
T Consensus         8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~-----------   72 (272)
T 3u4t_A            8 RYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV---NATKA-----------   72 (272)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS---CTTTC-----------
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc---CchhH-----------
Confidence            344445555555555555555544432 223344455555555555555555555554421   11100           


Q ss_pred             CChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043068          208 GMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKM  287 (526)
Q Consensus       208 g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~  287 (526)
                                       ....|..+...+...|++++|++.|++..+.... +..++..+...|...|++++|...+++.
T Consensus        73 -----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a  134 (272)
T 3u4t_A           73 -----------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQ  134 (272)
T ss_dssp             -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred             -----------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence                             1222444444444444455555544444443221 3344444455555555555555555544


Q ss_pred             HHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CC
Q 043068          288 RLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGK---SDEAISLLKEMRARG-LK  363 (526)
Q Consensus       288 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~  363 (526)
                      .+.. +.+...+..+...+...+++++|...++++.+..+. +...+..+...+...|+   +++|...+++..+.. -.
T Consensus       135 l~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  212 (272)
T 3u4t_A          135 IRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG  212 (272)
T ss_dssp             CCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG
T ss_pred             hhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc
Confidence            4332 233344444442222333555555555555544322 34444444555555454   444555555443321 01


Q ss_pred             CC------HHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068          364 PT------VFSFNAVFRILVENGELDRAILLLKQMPQ  394 (526)
Q Consensus       364 p~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~  394 (526)
                      |+      ...|..+...|.+.|++++|.+.|+++.+
T Consensus       213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  249 (272)
T 3u4t_A          213 GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA  249 (272)
T ss_dssp             GGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            11      12444445555555555555555555554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.64  E-value=1.1e-13  Score=133.08  Aligned_cols=230  Identities=10%  Similarity=0.074  Sum_probs=170.8

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 043068          124 FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNS-IKLAEEFFHQIVKENVVPPDVSTYTTMIR  202 (526)
Q Consensus       124 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~li~  202 (526)
                      ..+..+...+...|++++|++.|+++....+ .+..+|+.+..++...|+ +++|+..|+++++..  |.+..+|+.+..
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~  174 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence            3566777778888888899998888887774 457788888888888886 899999998888876  778888888888


Q ss_pred             HHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHH
Q 043068          203 GYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCI-NGRVDE  279 (526)
Q Consensus       203 ~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~  279 (526)
                      ++.+.|++++|+..|+++ .+ +.+...|..+..++.+.|++++|+..|+++++.... +...|+.+..++.+ .|..++
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence            888888888888888887 22 346778888888888888888888888888887544 67778888888877 555466


Q ss_pred             H-----HHHHHHHHHcCCCCCHHhHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-------
Q 043068          280 A-----KMLMAKMRLNGFKDNVSTHKSMLKGLCVVG--KFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIG-------  345 (526)
Q Consensus       280 a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------  345 (526)
                      |     +..|+++.+.. +.+...|..+...+.+.|  ++++|++.+.++ +.. ..+...+..+...|.+.|       
T Consensus       254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~  330 (382)
T 2h6f_A          254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNK  330 (382)
T ss_dssp             HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccch
Confidence            6     46677776654 455667777777777766  567777777766 332 235666777777776653       


Q ss_pred             --ChhHHHHHHHHH-HHC
Q 043068          346 --KSDEAISLLKEM-RAR  360 (526)
Q Consensus       346 --~~~~A~~~~~~m-~~~  360 (526)
                        ..++|+++++++ .+.
T Consensus       331 ~~~~~~A~~~~~~l~~~~  348 (382)
T 2h6f_A          331 EDILNKALELCEILAKEK  348 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence              246777777776 443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.64  E-value=2.5e-14  Score=131.66  Aligned_cols=245  Identities=11%  Similarity=0.023  Sum_probs=182.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHH
Q 043068          227 LAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN--VSTHKSMLK  304 (526)
Q Consensus       227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~  304 (526)
                      ..+......+...|++++|+..|++..+.... +...+..+...+...|++++|+..++++.+.+..++  ...+..+..
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK   82 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence            34556677788889999999999888876432 455777788888889999999999988887331111  234788888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043068          305 GLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDR  384 (526)
Q Consensus       305 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  384 (526)
                      .+...|++++|...+++..+..+. +..++..+...|...|++++|++.+++..+.. +.+...+..+...+...+++++
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~  160 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK  160 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999988887544 66788888899999999999999998887762 2345666666634455569999


Q ss_pred             HHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhCCCH
Q 043068          385 AILLLKQMPQMDCLPN-FVSYNTIICGLCMAKGR---MQDVEDLVDRMIRSG-HNLD------FTMYSCLLKGYCEEGNV  453 (526)
Q Consensus       385 a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~  453 (526)
                      |.+.|+++.+.  .|+ ...+..+...+... |+   .++|...++++++.. ..|+      ..+|..+...|.+.|++
T Consensus       161 A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  237 (272)
T 3u4t_A          161 ADSSFVKVLEL--KPNIYIGYLWRARANAAQ-DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK  237 (272)
T ss_dssp             HHHHHHHHHHH--STTCHHHHHHHHHHHHHH-STTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHh--CccchHHHHHHHHHHHHc-CcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence            99999988874  344 44555555555444 66   777888888877642 1122      25788899999999999


Q ss_pred             HHHHHHHHHHHHcCCCccchhhhH
Q 043068          454 ENVMQIAHEMVTKKGRLLKLKNFL  477 (526)
Q Consensus       454 ~~a~~~~~~m~~~~~~~~~~~~~~  477 (526)
                      ++|.+.+++.++.++..+.....+
T Consensus       238 ~~A~~~~~~al~~~p~~~~a~~~l  261 (272)
T 3u4t_A          238 VKADAAWKNILALDPTNKKAIDGL  261 (272)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccHHHHHHHh
Confidence            999999999999998777655443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.63  E-value=2.2e-13  Score=121.23  Aligned_cols=198  Identities=11%  Similarity=0.074  Sum_probs=94.7

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 043068          159 YSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-T-VKPNLLAYNTMINGF  236 (526)
Q Consensus       159 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~li~~~  236 (526)
                      ..+..+...+...|++++|.+.|+++.+..  |.+..++..+...+...|++++|.+.++++ . .+.+...+..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~   86 (225)
T 2vq2_A            9 NIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL   86 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            334444444444555555555555444443  334444444444444445554444444443 1 122334444455555


Q ss_pred             Hhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHH
Q 043068          237 CKK-GELEEAKKCMNEMMNRGCRPN-ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQ  314 (526)
Q Consensus       237 ~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  314 (526)
                      ... |++++|.+.++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  165 (225)
T 2vq2_A           87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD  165 (225)
T ss_dssp             HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence            555 555555555555544211222 3444445555555555555555555554433 2334445555555555555555


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068          315 AVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA  359 (526)
Q Consensus       315 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  359 (526)
                      |...++++.+..+..+...+..+...+...|+.++|..+++.+.+
T Consensus       166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            555555555443212444444445555555555555555555543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.63  E-value=2.5e-13  Score=120.80  Aligned_cols=210  Identities=10%  Similarity=-0.003  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043068          261 ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVING  340 (526)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~  340 (526)
                      ...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.... +..++..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~   85 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence            3445555555556666666666666555543 334555566666666666666666666666655332 45566666666


Q ss_pred             HHhc-CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCH
Q 043068          341 FCKI-GKSDEAISLLKEMRARGLKPT-VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRM  418 (526)
Q Consensus       341 ~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~  418 (526)
                      +... |++++|+..++++.+.+..|+ ...+..+..++...|++++|.+.++++.+.. +.+...+..+...+... |++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-~~~  163 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA-GQL  163 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH-TCH
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc-CCH
Confidence            6666 777777777766665222232 4556666667777777777777777766532 12345555555555554 778


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchh
Q 043068          419 QDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLK  474 (526)
Q Consensus       419 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  474 (526)
                      ++|...++++++..+..+...+..+...+...|+.++|..+++.+.+..+..+...
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  219 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ  219 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence            88888777777754423666677777777778888888888888777776555443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.63  E-value=3e-14  Score=128.68  Aligned_cols=197  Identities=14%  Similarity=0.100  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 043068          124 FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRG  203 (526)
Q Consensus       124 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~  203 (526)
                      ..+..+...+...|++++|+..|+++....+ .+...+..+...+...|++++|++.|+++.+..  +.+..++..+...
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~  100 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGNV  100 (243)
T ss_dssp             ------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHHH
Confidence            3455566666666777777777776665443 345666666666777777777777777766654  4556666666666


Q ss_pred             HHHcCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043068          204 YCKMGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAK  281 (526)
Q Consensus       204 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~  281 (526)
                      +...|++++|.+.++++  ..+.+...+..+...+.+.|++++|.+.++++.+... .+...+..+...+.+.|++++|.
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~  179 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEAL  179 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHH
Confidence            66666666666666654  1123445555556666666666666666666555422 24445555555555555555555


Q ss_pred             HHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068          282 MLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA  325 (526)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  325 (526)
                      ..++++.+.. +.+..++..+...|.+.|++++|...++++.+.
T Consensus       180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            5555555443 334445555555555555555555555555554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.63  E-value=1.1e-13  Score=133.01  Aligned_cols=237  Identities=10%  Similarity=0.053  Sum_probs=194.2

Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC-hhhHHHHHHhC-CC-CCCHHHHHHHHH
Q 043068          158 LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGM-IENAKKVFDVM-TV-KPNLLAYNTMIN  234 (526)
Q Consensus       158 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~-~~-~p~~~~~~~li~  234 (526)
                      ..+|..+..++.+.|++++|++.|+++++..  |.+..+|+.+..++.+.|+ +++|++.|+++ .. +.+...|+.+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            5567788888999999999999999999987  8889999999999999996 99999999987 32 346788999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH-cCCHH
Q 043068          235 GFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV-VGKFD  313 (526)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~  313 (526)
                      ++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..++++++.. +.+...|+.+..++.+ .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence            999999999999999999987544 78889999999999999999999999998876 6678889999999988 56657


Q ss_pred             HH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC------
Q 043068          314 QA-----VGYLRNVMEANMNPDVKSYEVVINGFCKIG--KSDEAISLLKEMRARGLKPTVFSFNAVFRILVENG------  380 (526)
Q Consensus       314 ~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g------  380 (526)
                      +|     +..+++.++..+. +...|+.+...+...|  ++++|++.+.++ +. ...+...+..+..+|.+.|      
T Consensus       253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~  329 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN  329 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence            77     4788888887655 6778888888888877  588888888887 33 2335667788888887764      


Q ss_pred             ---CHHHHHHHHHHc-ccCCCCcCHHH
Q 043068          381 ---ELDRAILLLKQM-PQMDCLPNFVS  403 (526)
Q Consensus       381 ---~~~~a~~~~~~~-~~~~~~p~~~~  403 (526)
                         ..++|+++++++ .+  +.|...-
T Consensus       330 ~~~~~~~A~~~~~~l~~~--~DP~r~~  354 (382)
T 2h6f_A          330 KEDILNKALELCEILAKE--KDTIRKE  354 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHT--TCGGGHH
T ss_pred             hHHHHHHHHHHHHHHHHH--hCchhHH
Confidence               257888888888 55  3355443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.62  E-value=8.3e-14  Score=138.05  Aligned_cols=349  Identities=11%  Similarity=0.009  Sum_probs=238.0

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHcCCCH---HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 043068           96 TAITDVLLSHSLISIAASLLKNSNKL-SDFFISKLIKAYGDRGNV---KAAIFWFHQAKQIENGACLYSYNSLLGVLVRV  171 (526)
Q Consensus        96 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~  171 (526)
                      ..++..+.+.|++++|..++++.... ++..+..|...|...|++   ++|+.+|++....    +...+..+...+...
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~   82 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK   82 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence            34677888899999999999865322 233445566666777888   9999999998754    566677777756665


Q ss_pred             C-----ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhh---HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 043068          172 N-----SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIEN---AKKVFDVMTVKPNLLAYNTMINGFCKKGELE  243 (526)
Q Consensus       172 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~  243 (526)
                      +     ++++|.+.|++..+.|  .++  .+..|...|...+..++   +.+.+.......+...+..+...|...+.++
T Consensus        83 ~~~~~~~~~~A~~~~~~Aa~~g--~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~  158 (452)
T 3e4b_A           83 PGATEAEHHEAESLLKKAFANG--EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD  158 (452)
T ss_dssp             --CCHHHHHHHHHHHHHHHHTT--CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGG
T ss_pred             CCCCCcCHHHHHHHHHHHHHCC--CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcc
Confidence            5     7889999999999987  333  77788888887766444   4444444321224556777888888888666


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHc----CCHHHHH
Q 043068          244 EAKKCMNEMMNRGCRPNELTYNAMIYGLCING---RVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV----GKFDQAV  316 (526)
Q Consensus       244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~  316 (526)
                      ++......+.+.-...++..+..|...|.+.|   +.++|+.+|++..+.| +++...+..+...|...    +++++|.
T Consensus       159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~  237 (452)
T 3e4b_A          159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ  237 (452)
T ss_dssp             GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence            66555444433322224448888888999999   9999999999999988 66776667788888655    7999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHH
Q 043068          317 GYLRNVMEANMNPDVKSYEVVING-F--CKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENG-----ELDRAILL  388 (526)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~  388 (526)
                      .+|++.. .|   +...+..+... |  ...+++++|++.|++..+.|   +...+..|...|. .|     ++++|++.
T Consensus       238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~  309 (452)
T 3e4b_A          238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAH  309 (452)
T ss_dssp             HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred             HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence            9999988 43   55667777766 4  56899999999999999876   6667777777777 55     99999999


Q ss_pred             HHHcccCCCCcCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHH
Q 043068          389 LKQMPQMDCLPNFVSYNTIICGLCMA---KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCE----EGNVENVMQIAH  461 (526)
Q Consensus       389 ~~~~~~~~~~p~~~~~~~ll~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~  461 (526)
                      |++.. .|   +......+-..|...   ..+.++|..++++..+.|.   ......|...|..    ..+.++|...|+
T Consensus       310 ~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~  382 (452)
T 3e4b_A          310 FEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQ  382 (452)
T ss_dssp             HHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred             HHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence            99988 43   445555555444331   1399999999999998774   4456677777764    468999999999


Q ss_pred             HHHHcCC
Q 043068          462 EMVTKKG  468 (526)
Q Consensus       462 ~m~~~~~  468 (526)
                      +..+.|.
T Consensus       383 ~A~~~g~  389 (452)
T 3e4b_A          383 LAKAQDT  389 (452)
T ss_dssp             HHHTTCC
T ss_pred             HHHHCCC
Confidence            9999885

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.62  E-value=1.2e-12  Score=120.60  Aligned_cols=222  Identities=9%  Similarity=-0.053  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCCHHHHH
Q 043068          123 DFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVR----VNSIKLAEEFFHQIVKENVVPPDVSTYT  198 (526)
Q Consensus       123 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~  198 (526)
                      +..+..+...|...|++++|+++|++..+.   .+..++..+...+..    .+++++|.+.|++..+.+    +..++.
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~   78 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCH   78 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHHH
Confidence            334455556666666666666666666552   234555566666666    666666666666666554    455666


Q ss_pred             HHHHHHHH----cCChhhHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043068          199 TMIRGYCK----MGMIENAKKVFDVMTVKPNLLAYNTMINGFCK----KGELEEAKKCMNEMMNRGCRPNELTYNAMIYG  270 (526)
Q Consensus       199 ~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  270 (526)
                      .+...|..    .+++++|.+.|++.-...+...+..+...|..    .+++++|++.|++..+.+   +...+..+...
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~  155 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL  155 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence            66666666    66666666666654111245555566666665    666666666666666543   34455555555


Q ss_pred             HHH----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043068          271 LCI----NGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV----VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC  342 (526)
Q Consensus       271 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~  342 (526)
                      |..    .+++++|...|++..+.+   +...+..+...|..    .+++++|...+++..+.+   +...+..+...|.
T Consensus       156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~  229 (273)
T 1ouv_A          156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY  229 (273)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence            555    566666666666655543   33445555555555    566666666666655543   2444555555555


Q ss_pred             h----cCChhHHHHHHHHHHHC
Q 043068          343 K----IGKSDEAISLLKEMRAR  360 (526)
Q Consensus       343 ~----~g~~~~A~~~~~~m~~~  360 (526)
                      .    .+++++|++.|++..+.
T Consensus       230 ~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          230 NGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             TTSSSSCCSTTHHHHHHHHHHH
T ss_pred             cCCCcccCHHHHHHHHHHHHHc
Confidence            5    55666666666555544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.61  E-value=7.2e-14  Score=126.13  Aligned_cols=199  Identities=15%  Similarity=0.130  Sum_probs=124.7

Q ss_pred             ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-C-CCCCHHHHHHHHH
Q 043068          157 CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-T-VKPNLLAYNTMIN  234 (526)
Q Consensus       157 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~li~  234 (526)
                      ....|..+...+...|++++|...|+++.+..  |.+..++..+...+.+.|++++|.+.++++ . .+.+...+..+..
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~   99 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN   99 (243)
T ss_dssp             --------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            34566667777777888888888888887765  667777777777777788888887777765 1 1335666777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHH
Q 043068          235 GFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQ  314 (526)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  314 (526)
                      .+...|++++|.+.++++.+... .+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence            77777777777777777776532 256666677777777777777777777776654 4456666667777777777777


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068          315 AVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR  360 (526)
Q Consensus       315 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  360 (526)
                      |...++++.+.... +..++..+...|...|++++|.+.++++.+.
T Consensus       178 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          178 ALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            77777776665432 5566666777777777777777777776654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.61  E-value=5.8e-14  Score=129.37  Aligned_cols=224  Identities=13%  Similarity=-0.045  Sum_probs=133.6

Q ss_pred             cCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHH
Q 043068          239 KGELEEAKKCMNEMMNRGCR---PNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQA  315 (526)
Q Consensus       239 ~g~~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  315 (526)
                      .|++++|+..|+++.+....   .+..++..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence            45666677777666654221   124455666666666777777777777666554 44566666666777777777777


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccC
Q 043068          316 VGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQM  395 (526)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  395 (526)
                      ...++++.+..+. +..++..+...|...|++++|+..++++.+.  .|+.......+..+...|++++|...+++....
T Consensus        97 ~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           97 YEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            7777766665433 4556666667777777777777777776654  344333334444445567777777777665543


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 043068          396 DCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNL---DFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGR  469 (526)
Q Consensus       396 ~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  469 (526)
                      . .++...+. +...+.. .++.++|...++++.+.....   +..++..+..+|.+.|++++|...++++++.++.
T Consensus       174 ~-~~~~~~~~-~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  247 (275)
T 1xnf_A          174 S-DKEQWGWN-IVEFYLG-NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH  247 (275)
T ss_dssp             S-CCCSTHHH-HHHHHTT-SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred             C-CcchHHHH-HHHHHHH-hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence            2 12222222 3333333 366667777776665432210   1456677777777777777777777777776653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.57  E-value=6.4e-14  Score=137.36  Aligned_cols=267  Identities=14%  Similarity=0.094  Sum_probs=163.2

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCCHHHHH
Q 043068          127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGACL----YSYNSLLGVLVRVNSIKLAEEFFHQIVKE----NVVPPDVSTYT  198 (526)
Q Consensus       127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~  198 (526)
                      ..+...+...|++++|+..|+++....+ .+.    ..+..+...+...|++++|++.|++.++.    +..+....++.
T Consensus        52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  130 (411)
T 4a1s_A           52 ALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG  130 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence            3456667777788888887777776653 222    46677777777778888887777776543    10123445677


Q ss_pred             HHHHHHHHcCChhhHHHHHHhC-------CCC-CCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHH
Q 043068          199 TMIRGYCKMGMIENAKKVFDVM-------TVK-PNLLAYNTMINGFCKKGE-----------------LEEAKKCMNEMM  253 (526)
Q Consensus       199 ~li~~~~~~g~~~~A~~~~~~~-------~~~-p~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~  253 (526)
                      .+...|...|++++|.+.+++.       +.. .....+..+...|...|+                 +++|++.+++..
T Consensus       131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al  210 (411)
T 4a1s_A          131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL  210 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence            7777777777777777777665       111 123456677777777777                 777777776654


Q ss_pred             Hc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068          254 NR----GCRP-NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFK-DN----VSTHKSMLKGLCVVGKFDQAVGYLRNVM  323 (526)
Q Consensus       254 ~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~  323 (526)
                      +.    +..+ ...++..+...|...|++++|+..+++..+.... .+    ..++..+...|...|++++|...+++..
T Consensus       211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  290 (411)
T 4a1s_A          211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL  290 (411)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            42    1111 1235666677777777777777777776542100 11    2256666777777777777777777665


Q ss_pred             HcCCC-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q 043068          324 EANMN-----PDVKSYEVVINGFCKIGKSDEAISLLKEMRARG----LK-PTVFSFNAVFRILVENGELDRAILLLKQMP  393 (526)
Q Consensus       324 ~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~  393 (526)
                      +....     ....++..+...|...|++++|...+++..+..    .. ....++..+...|.+.|++++|.+.+++..
T Consensus       291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  370 (411)
T 4a1s_A          291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL  370 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            43111     013456666677777777777777777665421    00 012355566666667777777777766665


Q ss_pred             c
Q 043068          394 Q  394 (526)
Q Consensus       394 ~  394 (526)
                      +
T Consensus       371 ~  371 (411)
T 4a1s_A          371 Q  371 (411)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.57  E-value=1.4e-13  Score=134.56  Aligned_cols=231  Identities=14%  Similarity=0.145  Sum_probs=109.2

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCCHHHH
Q 043068          126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGAC----LYSYNSLLGVLVRVNSIKLAEEFFHQIVKE----NVVPPDVSTY  197 (526)
Q Consensus       126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~  197 (526)
                      +..+...+...|++++|+..|+++....+ .+    ..++..+...+...|++++|...+++..+.    +..+....++
T Consensus        12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   90 (406)
T 3sf4_A           12 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   90 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            34445555566666666666666655442 12    234555566666666666666666654432    1001123445


Q ss_pred             HHHHHHHHHcCChhhHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 043068          198 TTMIRGYCKMGMIENAKKVFDVM-TV---KPN----LLAYNTMINGFCKKGE--------------------LEEAKKCM  249 (526)
Q Consensus       198 ~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~li~~~~~~g~--------------------~~~A~~~~  249 (526)
                      ..+...+...|++++|...+++. ..   .++    ..++..+...+...|+                    +++|.+.+
T Consensus        91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  170 (406)
T 3sf4_A           91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY  170 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            55556666666666666655544 00   011    2245555555555666                    55555555


Q ss_pred             HHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHHcCCHHHHHHHH
Q 043068          250 NEMMNR----GCRP-NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGF-KDN----VSTHKSMLKGLCVVGKFDQAVGYL  319 (526)
Q Consensus       250 ~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~  319 (526)
                      ++..+.    +..| ...++..+...|...|++++|...+++..+... .++    ..++..+...|...|++++|...+
T Consensus       171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  250 (406)
T 3sf4_A          171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY  250 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            554332    1000 122344555555555555555555555432200 001    124444455555555555555555


Q ss_pred             HHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068          320 RNVMEANMN-PD----VKSYEVVINGFCKIGKSDEAISLLKEM  357 (526)
Q Consensus       320 ~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m  357 (526)
                      ++..+.... .+    ..++..+...|...|++++|...+++.
T Consensus       251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  293 (406)
T 3sf4_A          251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH  293 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            544432100 00    223444444444555555555544444

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.57  E-value=2e-13  Score=133.34  Aligned_cols=296  Identities=12%  Similarity=0.048  Sum_probs=212.7

Q ss_pred             CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCChhhHHHHHHhC-------CCCC
Q 043068          156 ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD----VSTYTTMIRGYCKMGMIENAKKVFDVM-------TVKP  224 (526)
Q Consensus       156 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p  224 (526)
                      .....+......+...|++++|...|+++++.+  +.+    ..++..+...+...|++++|...+++.       +..|
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            345566778888999999999999999999876  445    367888999999999999999998875       2122


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCC--------------------HH
Q 043068          225 -NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCR-PN----ELTYNAMIYGLCINGR--------------------VD  278 (526)
Q Consensus       225 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~--------------------~~  278 (526)
                       ....+..+...+...|++++|...+++..+.... ++    ..++..+...|...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence             2457888889999999999999999988664110 12    3467888888999999                    99


Q ss_pred             HHHHHHHHHHHc----CC-CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChh
Q 043068          279 EAKMLMAKMRLN----GF-KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANM-NPD----VKSYEVVINGFCKIGKSD  348 (526)
Q Consensus       279 ~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~  348 (526)
                      +|...+++..+.    +. +....++..+...|...|++++|...+++..+... .++    ..++..+...|...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            999998877542    11 11234677888889999999999999988775311 112    236788888899999999


Q ss_pred             HHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcccC----CCCcC-HHHHHHHHHHHHhcCCCH
Q 043068          349 EAISLLKEMRAR----GLKP-TVFSFNAVFRILVENGELDRAILLLKQMPQM----DCLPN-FVSYNTIICGLCMAKGRM  418 (526)
Q Consensus       349 ~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~ll~~~~~~~g~~  418 (526)
                      +|+..+++..+.    +..+ ...++..+...|...|++++|.+.+++..+.    +-.+. ...+..+...+... |++
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~  323 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL-GNH  323 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-CCH
Confidence            999999887643    1111 1456778888888999999999988887652    11111 33455555555554 888


Q ss_pred             HHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhCCCHH
Q 043068          419 QDVEDLVDRMIRS----GHN-LDFTMYSCLLKGYCEEGNVE  454 (526)
Q Consensus       419 ~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~  454 (526)
                      ++|.+.+++.++.    +.. ....++..+...+...|+..
T Consensus       324 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence            8888888887653    111 12456677777777777653

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.56  E-value=7.5e-14  Score=132.35  Aligned_cols=266  Identities=14%  Similarity=0.116  Sum_probs=135.1

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCCHHHHH
Q 043068          127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGAC----LYSYNSLLGVLVRVNSIKLAEEFFHQIVKE----NVVPPDVSTYT  198 (526)
Q Consensus       127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~  198 (526)
                      ......+...|++++|+..|+++....+ .+    ...+..+...+...|++++|.+.+++..+.    +..+....++.
T Consensus         9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   87 (338)
T 3ro2_A            9 ALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG   87 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence            3445566677777777777777766543 22    345666777777777777777777765432    10112244566


Q ss_pred             HHHHHHHHcCChhhHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 043068          199 TMIRGYCKMGMIENAKKVFDVM----TVKPN----LLAYNTMINGFCKKGE--------------------LEEAKKCMN  250 (526)
Q Consensus       199 ~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~  250 (526)
                      .+...+...|++++|.+.+++.    ...++    ..++..+...+...|+                    +++|.+.++
T Consensus        88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~  167 (338)
T 3ro2_A           88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE  167 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence            6666677777777777666654    10111    2355566666666666                    666666665


Q ss_pred             HHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHhHHHHHHHHHHcCCHHHHHHHHH
Q 043068          251 EMMNR----GCRP-NELTYNAMIYGLCINGRVDEAKMLMAKMRLN----GF-KDNVSTHKSMLKGLCVVGKFDQAVGYLR  320 (526)
Q Consensus       251 ~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~  320 (526)
                      +....    +..+ ...++..+...+...|++++|...+++..+.    +. .....++..+...+...|++++|...++
T Consensus       168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  247 (338)
T 3ro2_A          168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK  247 (338)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            54332    1010 1234555555566666666666666655432    10 0011244445555555555555555555


Q ss_pred             HHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043068          321 NVMEANMN-PD----VKSYEVVINGFCKIGKSDEAISLLKEMRARG----LK-PTVFSFNAVFRILVENGELDRAILLLK  390 (526)
Q Consensus       321 ~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~-p~~~~~~~li~~~~~~g~~~~a~~~~~  390 (526)
                      +..+.... .+    ..++..+...|...|++++|...+++..+..    .. ....++..+...|.+.|++++|.+.++
T Consensus       248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  327 (338)
T 3ro2_A          248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE  327 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            54432100 01    2334444455555555555555555443220    00 001233344444444445554444444


Q ss_pred             Hcc
Q 043068          391 QMP  393 (526)
Q Consensus       391 ~~~  393 (526)
                      +..
T Consensus       328 ~a~  330 (338)
T 3ro2_A          328 KHL  330 (338)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.55  E-value=1.7e-13  Score=134.28  Aligned_cols=276  Identities=11%  Similarity=0.067  Sum_probs=163.0

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHHcCChhhHHHHHHhC-------C-CCCCH
Q 043068          159 YSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDV----STYTTMIRGYCKMGMIENAKKVFDVM-------T-VKPNL  226 (526)
Q Consensus       159 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~  226 (526)
                      ..+..+...+...|++++|+..|+++++.+  +.+.    .++..+...|...|++++|.+.+++.       + .....
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  126 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence            345566778889999999999999999876  4454    57888889999999999999988775       1 12234


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCC-----------------HHHHHHHH
Q 043068          227 LAYNTMINGFCKKGELEEAKKCMNEMMNR----GC-RPNELTYNAMIYGLCINGR-----------------VDEAKMLM  284 (526)
Q Consensus       227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~-----------------~~~a~~~~  284 (526)
                      ..+..+...|...|++++|...|++..+.    +- .....++..+...|...|+                 +++|+..+
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~  206 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY  206 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence            56778888888888988888888877653    11 1123456667777777777                 66666666


Q ss_pred             HHHHHc----CC-CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068          285 AKMRLN----GF-KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN-PDVKSYEVVINGFCKIGKSDEAISLLKEMR  358 (526)
Q Consensus       285 ~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  358 (526)
                      ++..+.    +. .....++..+...|...|++++|...+++..+.... .+..                          
T Consensus       207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------------  260 (411)
T 4a1s_A          207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA--------------------------  260 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH--------------------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH--------------------------
Confidence            655321    10 111224444555555555555555555554432100 0100                          


Q ss_pred             HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccC----CCC-cCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC
Q 043068          359 ARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQM----DCL-PNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGH  433 (526)
Q Consensus       359 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~  433 (526)
                           .....+..+...|...|++++|.+.+++..+.    +.. .....+..+...+... |++++|...+++.++...
T Consensus       261 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~  334 (411)
T 4a1s_A          261 -----AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL-HEFNTAIEYHNRHLAIAQ  334 (411)
T ss_dssp             -----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence                 00113444444455555555555555444331    000 0123333444444333 666666666665554210


Q ss_pred             -----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          434 -----NLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       434 -----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                           .....++..+..+|.+.|++++|.+.+++.++...
T Consensus       335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX  374 (411)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence                 11134667777788888888888888888877765

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.54  E-value=6.5e-12  Score=117.86  Aligned_cols=214  Identities=10%  Similarity=0.064  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-------cCCh-------hhHHHHHHhC-C-CCC-CHHHHHHHHHHHH
Q 043068          175 KLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK-------MGMI-------ENAKKVFDVM-T-VKP-NLLAYNTMINGFC  237 (526)
Q Consensus       175 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~-~-~~p-~~~~~~~li~~~~  237 (526)
                      ++|..+|++.++..  |.+...|..++..+..       .|++       ++|..+|++. . +.| +...|..++..+.
T Consensus        33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            56777777777764  6677777777766653       3554       5666666654 3 333 3345566666666


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH-HcCCHHH
Q 043068          238 KKGELEEAKKCMNEMMNRGCRPN-EL-TYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC-VVGKFDQ  314 (526)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~  314 (526)
                      +.|++++|.++|++.++.  .|+ .. .|..++..+.+.|++++|..+|+++.+.. +.+...|...+.... ..|+.++
T Consensus       111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred             hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence            666666666666666553  222 22 55555555566666666666666655443 223333332222211 1355555


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068          315 AVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARG-LKP--TVFSFNAVFRILVENGELDRAILLLKQ  391 (526)
Q Consensus       315 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~  391 (526)
                      |..+|++..+..+. +...|..++..+.+.|++++|+.+|++..... +.|  ....|..++....+.|+.++|..++++
T Consensus       188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~  266 (308)
T 2ond_A          188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            55555555544322 44455555555555555555555555555431 222  233444444444455555555555555


Q ss_pred             ccc
Q 043068          392 MPQ  394 (526)
Q Consensus       392 ~~~  394 (526)
                      +.+
T Consensus       267 a~~  269 (308)
T 2ond_A          267 RFT  269 (308)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.53  E-value=5.3e-13  Score=133.11  Aligned_cols=211  Identities=9%  Similarity=-0.019  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHH
Q 043068          139 VKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSI-KLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVF  217 (526)
Q Consensus       139 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  217 (526)
                      ++++++.+++...... .+...+..+...+...|++ ++|++.|++.++..  |.+..+|..+..+|.+.|++++|.+.|
T Consensus        84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4556666665554332 4566777777777777777 77777777777765  566777777777777777777777777


Q ss_pred             HhC-CCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------CCHHH
Q 043068          218 DVM-TVKPNLLAYNTMINGFCKK---------GELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCIN--------GRVDE  279 (526)
Q Consensus       218 ~~~-~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~~~  279 (526)
                      ++. ...|+...+..+...+...         |++++|++.|++..+.... +...|..+..+|...        |++++
T Consensus       161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~  239 (474)
T 4abn_A          161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQ  239 (474)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHH
Confidence            775 5556666677777777777         7777777777777766322 566667777777666        66777


Q ss_pred             HHHHHHHHHHcCCC---CCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043068          280 AKMLMAKMRLNGFK---DNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLK  355 (526)
Q Consensus       280 a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  355 (526)
                      |+..|+++.+.. +   .+...+..+..+|...|++++|...|++..+..+. +...+..+...+...|++++|++.+.
T Consensus       240 A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~  316 (474)
T 4abn_A          240 ALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG  316 (474)
T ss_dssp             HHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            777777766653 3   45666666777777777777777777776665433 45566666666666666666665443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.52  E-value=7.7e-13  Score=125.32  Aligned_cols=275  Identities=13%  Similarity=0.061  Sum_probs=156.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCChhhHHHHHHhC-------CCCC-CHH
Q 043068          160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD----VSTYTTMIRGYCKMGMIENAKKVFDVM-------TVKP-NLL  227 (526)
Q Consensus       160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~  227 (526)
                      .+......+...|++++|...|+++.+..  +.+    ...+..+...+...|++++|.+.+++.       +..+ ...
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            34455677888899999999999988875  445    467778888888889999888888775       1111 244


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRGC-RPN----ELTYNAMIYGLCINGR--------------------VDEAKM  282 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~  282 (526)
                      .+..+...+...|++++|...+++..+... .++    ..++..+...+...|+                    +++|..
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            677777888888888888888877655311 112    2356666677777777                    666666


Q ss_pred             HHHHHHHc----CC-CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043068          283 LMAKMRLN----GF-KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN-PDVKSYEVVINGFCKIGKSDEAISLLKE  356 (526)
Q Consensus       283 ~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~  356 (526)
                      .+++..+.    +. +....++..+...+...|++++|...+++..+.... ++.                         
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------------------  219 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK-------------------------  219 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH-------------------------
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh-------------------------
Confidence            66655321    10 111224444555555555555555555544332000 000                         


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccC----CCCcC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 043068          357 MRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQM----DCLPN-FVSYNTIICGLCMAKGRMQDVEDLVDRMIRS  431 (526)
Q Consensus       357 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~  431 (526)
                            .....++..+...+...|++++|...+++..+.    +..+. ...+..+...+... |++++|...++++++.
T Consensus       220 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~  292 (338)
T 3ro2_A          220 ------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAI  292 (338)
T ss_dssp             ------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence                  001123444444555555555555555544321    10000 22333344444333 6666666666655542


Q ss_pred             CC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          432 GH-----NLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       432 ~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                      ..     .....++..+...|.+.|++++|.+.+++.++...
T Consensus       293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            11     11134666777778888888888888887777654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.52  E-value=1.1e-10  Score=119.67  Aligned_cols=405  Identities=11%  Similarity=0.033  Sum_probs=254.7

Q ss_pred             HHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCC---HHHHHHHHHhcCC-----CCHHHHHHHH
Q 043068           59 TKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSL---ISIAASLLKNSNK-----LSDFFISKLI  130 (526)
Q Consensus        59 ~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~-----~~~~~~~~li  130 (526)
                      +..+...++.+.|..+|++++...|      .....|...++.-.+.+.   ++.+..+|+++..     ++...|...+
T Consensus        73 i~~~~~~~~~~~aR~vyEraL~~fP------~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl  146 (679)
T 4e6h_A           73 LKHHVSLKQWKQVYETFDKLHDRFP------LMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYI  146 (679)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            3444446677777777777776543      334457777777777777   7777777776542     4455666555


Q ss_pred             HHHHcCCCH--------HHHHHHHHHHHh-cCC-CC-ChhhHHHHHHHHHh---------cCChhHHHHHHHHHHHcCCC
Q 043068          131 KAYGDRGNV--------KAAIFWFHQAKQ-IEN-GA-CLYSYNSLLGVLVR---------VNSIKLAEEFFHQIVKENVV  190 (526)
Q Consensus       131 ~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~  190 (526)
                      ....+.++.        +...++|+.+.. .|. .+ +...|...+.....         .++++.+.++|++++..   
T Consensus       147 ~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i---  223 (679)
T 4e6h_A          147 TYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ---  223 (679)
T ss_dssp             HHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS---
T ss_pred             HHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC---
Confidence            544444332        334466766553 233 23 24566666655432         23456677777777642   


Q ss_pred             CCC--HHHHHHHHHHHHHcC-------------ChhhHHHHHHhC-----CC----C-----------C-----C---HH
Q 043068          191 PPD--VSTYTTMIRGYCKMG-------------MIENAKKVFDVM-----TV----K-----------P-----N---LL  227 (526)
Q Consensus       191 ~~~--~~~~~~li~~~~~~g-------------~~~~A~~~~~~~-----~~----~-----------p-----~---~~  227 (526)
                      |..  ..+|......--..+             +++.|...+.++     ++    +           |     +   ..
T Consensus       224 P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~  303 (679)
T 4e6h_A          224 PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLL  303 (679)
T ss_dssp             CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHH
Confidence            222  233332222111111             122333334331     10    0           1     0   13


Q ss_pred             HHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCCHHhH
Q 043068          228 AYNTMINGFCKKG-------ELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAK-MLMAKMRLNGFKDNVSTH  299 (526)
Q Consensus       228 ~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~  299 (526)
                      .|...+..--..+       ..+.+..+|++.+..- .-....|...+..+...|+.++|. .+|++.... ++.+...+
T Consensus       304 lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lw  381 (679)
T 4e6h_A          304 IWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLA  381 (679)
T ss_dssp             HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHH
T ss_pred             HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHH
Confidence            3444444322222       1234556777777652 336777777777788889988996 999999864 35667778


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068          300 KSMLKGLCVVGKFDQAVGYLRNVMEAN---------MNPD------------VKSYEVVINGFCKIGKSDEAISLLKEMR  358 (526)
Q Consensus       300 ~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~  358 (526)
                      ...+...-+.|++++|.++|+++.+..         ..|+            ...|...+....+.|+.+.|.++|.+..
T Consensus       382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~  461 (679)
T 4e6h_A          382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR  461 (679)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            888999999999999999999988641         0132            3468888888888999999999999998


Q ss_pred             HCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC--
Q 043068          359 ARGLKPTVFSFNAVFRILVEN-GELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNL--  435 (526)
Q Consensus       359 ~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p--  435 (526)
                      +.-.......|...+..-.+. ++.+.|.++|+...+. +.-+...+...+...... |+.+.|..+|++.+.....+  
T Consensus       462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~-~~~~~AR~lferal~~~~~~~~  539 (679)
T 4e6h_A          462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYV-NEESQVKSLFESSIDKISDSHL  539 (679)
T ss_dssp             HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHTTTSSSTTH
T ss_pred             HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhC-CCHHHHHHHHHHHHHhcCCHHH
Confidence            761111233443333333344 4589999999998874 233455556666655554 99999999999998865422  


Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhh
Q 043068          436 DFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNF  476 (526)
Q Consensus       436 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  476 (526)
                      ....|...+..-.+.|+.+.+.++.+++.+..+..+.+..|
T Consensus       540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f  580 (679)
T 4e6h_A          540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEF  580 (679)
T ss_dssp             HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            34688888888899999999999999999999977665555

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.51  E-value=1.1e-11  Score=116.24  Aligned_cols=216  Identities=8%  Similarity=0.025  Sum_probs=173.4

Q ss_pred             HHHHHHHHHHHhcCCCCChhhHHHHHHHHH-------hcCCh-------hHHHHHHHHHHH-cCCCCCCHHHHHHHHHHH
Q 043068          140 KAAIFWFHQAKQIENGACLYSYNSLLGVLV-------RVNSI-------KLAEEFFHQIVK-ENVVPPDVSTYTTMIRGY  204 (526)
Q Consensus       140 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~~li~~~  204 (526)
                      ++|+.+|+++....+ .+...|..++..+.       +.|++       ++|..+|++.++ ..  |.+...|..++..+
T Consensus        33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~--p~~~~~~~~~~~~~  109 (308)
T 2ond_A           33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence            678889998887664 56778888777765       35776       899999999988 34  66778899999999


Q ss_pred             HHcCChhhHHHHHHhC-CCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHH
Q 043068          205 CKMGMIENAKKVFDVM-TVKPN-LL-AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLC-INGRVDEA  280 (526)
Q Consensus       205 ~~~g~~~~A~~~~~~~-~~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a  280 (526)
                      .+.|++++|.++|++. ...|+ .. .|..++..+.+.|++++|.++|++..+... .+...|........ ..|++++|
T Consensus       110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999987 55554 33 788899999999999999999999988643 34455554433322 36999999


Q ss_pred             HHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068          281 KMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN-MNP--DVKSYEVVINGFCKIGKSDEAISLLKEM  357 (526)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m  357 (526)
                      ..+|+++.+.. +.+...|..++..+.+.|++++|..+|++..... ..|  ....|..++..+.+.|+.++|..+++++
T Consensus       189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999988764 5578889999999999999999999999999863 233  5678888999999999999999999998


Q ss_pred             HHC
Q 043068          358 RAR  360 (526)
Q Consensus       358 ~~~  360 (526)
                      .+.
T Consensus       268 ~~~  270 (308)
T 2ond_A          268 FTA  270 (308)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            876

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.51  E-value=1.7e-12  Score=126.02  Aligned_cols=233  Identities=9%  Similarity=-0.019  Sum_probs=154.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC----CCCHHhHH
Q 043068          232 MINGFCKKGELEEAKKCMNEMMNRGC-RPN----ELTYNAMIYGLCINGRVDEAKMLMAKMRLN--GF----KDNVSTHK  300 (526)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~----~~~~~~~~  300 (526)
                      ....+...|++++|+..|++..+.-. .++    ..++..+...|...|++++|...+++..+.  ..    +....+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            45556667777777777777765310 112    345667777777777777777777776542  11    11134667


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHH
Q 043068          301 SMLKGLCVVGKFDQAVGYLRNVMEANMN-PD----VKSYEVVINGFCKIGKSDEAISLLKEMRAR----GL-KPTVFSFN  370 (526)
Q Consensus       301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~  370 (526)
                      .+...|...|++++|...+++..+.... .+    ..++..+...|...|++++|++.+++..+.    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            7777888888888888888777653111 11    236777888888889999888888887662    22 22355778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHcccCC---CCcCH-HHHHHHHHHHHhcCCC---HHHHHHHHHHHHHCCCCC-CHHHHHH
Q 043068          371 AVFRILVENGELDRAILLLKQMPQMD---CLPNF-VSYNTIICGLCMAKGR---MQDVEDLVDRMIRSGHNL-DFTMYSC  442 (526)
Q Consensus       371 ~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~-~~~~~ll~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~~~  442 (526)
                      .+...+.+.|++++|.+.+++..+..   -.|.. ..+.. +..+....|+   +++|..++++.   +..| ....+..
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~  344 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF-LKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAID  344 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence            88888889999999999888876521   01222 22334 3344444577   67777777665   3333 3347778


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          443 LLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       443 l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                      +...|.+.|++++|...+++.++...
T Consensus       345 la~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          345 VAKYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            89999999999999999999877544

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.50  E-value=5.5e-12  Score=108.51  Aligned_cols=166  Identities=13%  Similarity=0.093  Sum_probs=105.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043068          225 NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLK  304 (526)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  304 (526)
                      +...|..+...|.+.|++++|++.|++.++.... +..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            4556666666666666666666666666665332 45566666666666667766666666665544 445555666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043068          305 GLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDR  384 (526)
Q Consensus       305 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  384 (526)
                      .+...++++.|...+.+..+..+. +...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            666666676666666666665433 55666666666666777777777776666542 2245566666666667777777


Q ss_pred             HHHHHHHccc
Q 043068          385 AILLLKQMPQ  394 (526)
Q Consensus       385 a~~~~~~~~~  394 (526)
                      |++.|++..+
T Consensus       160 A~~~~~~al~  169 (184)
T 3vtx_A          160 AVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7777766665

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.49  E-value=8.9e-12  Score=107.18  Aligned_cols=163  Identities=15%  Similarity=0.112  Sum_probs=69.1

Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHHHHHHH
Q 043068          158 LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYNTMING  235 (526)
Q Consensus       158 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~  235 (526)
                      ..+|..+...+.+.|++++|++.|++.++..  |.+..++..+..+|.+.|++++|.+.++..  ..+.+...+..+...
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            3344444444444444444444444444443  344444444444444444444444444433  111223333334444


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHH
Q 043068          236 FCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQA  315 (526)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  315 (526)
                      +...++++.|...+.+....... +...+..+...+.+.|++++|++.|++..+.. +.+..++..+...|.+.|++++|
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence            44444444444444444433211 33334444444444444444444444444332 23333444444444444444444


Q ss_pred             HHHHHHHHH
Q 043068          316 VGYLRNVME  324 (526)
Q Consensus       316 ~~~~~~~~~  324 (526)
                      .+.|++.++
T Consensus       161 ~~~~~~al~  169 (184)
T 3vtx_A          161 VKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            444444443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.48  E-value=7.1e-12  Score=121.60  Aligned_cols=291  Identities=11%  Similarity=-0.011  Sum_probs=192.8

Q ss_pred             HcCCCHHHHHHHHHHHHhcC--CCCC--hhhHHHHHHH--HHhcCChhHHH-----------HHHHHHHHcCCCCCCHH-
Q 043068          134 GDRGNVKAAIFWFHQAKQIE--NGAC--LYSYNSLLGV--LVRVNSIKLAE-----------EFFHQIVKENVVPPDVS-  195 (526)
Q Consensus       134 ~~~g~~~~A~~~~~~~~~~~--~~~~--~~~~~~li~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~~-  195 (526)
                      .+.+++++|..+++++...-  ...+  ...|-.++..  ..-.+.++.+.           +.++.+....   .+.. 
T Consensus        23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~---~~~~~   99 (383)
T 3ulq_A           23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ---ARLTG   99 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT---HHHHH
T ss_pred             HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC---CCchh
Confidence            45778888888887775432  1122  2333333322  11223444444           6666654432   1212 


Q ss_pred             -----HHHHHHHHHHHcCChhhHHHHHHhC-CC---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C--
Q 043068          196 -----TYTTMIRGYCKMGMIENAKKVFDVM-TV---KP----NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCR-P--  259 (526)
Q Consensus       196 -----~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p--  259 (526)
                           .+......+...|++++|.+.|++. ..   .+    ...++..+...|...|++++|+..+++..+.-.. +  
T Consensus       100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  179 (383)
T 3ulq_A          100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY  179 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence                 2223666778889999999988876 21   12    2357888888999999999999999887664111 1  


Q ss_pred             ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHhHHHHHHHHHHcCCHHHHHHHHHHHHH-----cC
Q 043068          260 ---NELTYNAMIYGLCINGRVDEAKMLMAKMRLN----GFK-DNVSTHKSMLKGLCVVGKFDQAVGYLRNVME-----AN  326 (526)
Q Consensus       260 ---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~  326 (526)
                         ...++..+...|...|++++|+..+++..+.    +.. ....++..+...|...|++++|...+++..+     ..
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence               1356778888899999999999999887643    111 1124778889999999999999999998877     22


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHcccCCCCc
Q 043068          327 MNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR----GLKPTVFSFNAVFRILVENGE---LDRAILLLKQMPQMDCLP  399 (526)
Q Consensus       327 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p  399 (526)
                      ......++..+...|.+.|++++|...+++..+.    +.......+..+...+...|+   +++|+.++++..   ..|
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~  336 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYA  336 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHH
Confidence            1334667888899999999999999999887653    111122335667777888888   888888888773   234


Q ss_pred             CHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 043068          400 NFV-SYNTIICGLCMAKGRMQDVEDLVDRMIRS  431 (526)
Q Consensus       400 ~~~-~~~~ll~~~~~~~g~~~~a~~~~~~~~~~  431 (526)
                      +.. .+..+...+. ..|++++|.+.+++.++.
T Consensus       337 ~~~~~~~~la~~y~-~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          337 DLEDFAIDVAKYYH-ERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHH
Confidence            433 3444444444 459999999999988753

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.47  E-value=2.6e-12  Score=128.17  Aligned_cols=216  Identities=9%  Similarity=-0.003  Sum_probs=182.1

Q ss_pred             CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh-hhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 043068          172 NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMI-ENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKC  248 (526)
Q Consensus       172 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~  248 (526)
                      +.++++++.+++.....  +.+...+..+...+...|++ ++|++.|++. ...| +...|..+..+|.+.|++++|++.
T Consensus        82 ~~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            34667778888776654  67899999999999999999 9999999987 3333 578899999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHc--------CC
Q 043068          249 MNEMMNRGCRPNELTYNAMIYGLCIN---------GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV--------GK  311 (526)
Q Consensus       249 ~~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~  311 (526)
                      |++..+.  .|+...+..+...+...         |++++|+..++++.+.. +.+...+..+..+|...        |+
T Consensus       160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~  236 (474)
T 4abn_A          160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI  236 (474)
T ss_dssp             HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence            9999987  56778888999999998         99999999999998875 66788899999999988        99


Q ss_pred             HHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043068          312 FDQAVGYLRNVMEANMN--PDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLL  389 (526)
Q Consensus       312 ~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  389 (526)
                      +++|+..|++..+..+.  -+...|..+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|++.+
T Consensus       237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999987541  378889999999999999999999999988763 224567888888899999999998876


Q ss_pred             HHcc
Q 043068          390 KQMP  393 (526)
Q Consensus       390 ~~~~  393 (526)
                      .++.
T Consensus       316 ~~~~  319 (474)
T 4abn_A          316 GKTK  319 (474)
T ss_dssp             TTCC
T ss_pred             cccc
Confidence            6553

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.45  E-value=1.2e-12  Score=122.71  Aligned_cols=242  Identities=11%  Similarity=0.029  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C-
Q 043068          226 LLAYNTMINGFCKKGELEEAKKCMNEMMNR-------GCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLN------G-  291 (526)
Q Consensus       226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~-  291 (526)
                      ..++..+...+...|++++|..+|+++.+.       ........+..+...|...|++++|...++++.+.      + 
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            445556666666666666666666665542       11222344555666666666666666666665442      1 


Q ss_pred             CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----
Q 043068          292 FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA------NM-NPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR----  360 (526)
Q Consensus       292 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----  360 (526)
                      .+....++..+...|...|++++|...+++..+.      +. ......+..+...|...|++++|++.++++.+.    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            1223445566666666677777777666666543      11 112345666677777777777777777776543    


Q ss_pred             --CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcccC-------CCCcCHHHHHHHHHHHHh------cCCCHHHHHHH
Q 043068          361 --GLKP-TVFSFNAVFRILVENGELDRAILLLKQMPQM-------DCLPNFVSYNTIICGLCM------AKGRMQDVEDL  424 (526)
Q Consensus       361 --~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~~~~~~ll~~~~~------~~g~~~~a~~~  424 (526)
                        +..| ...++..+...|...|++++|.+.++++.+.       ...+...........+..      ..+.+.++...
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  266 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW  266 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence              1122 2345666777777777777777777776641       111111111111111111      12455556666


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          425 VDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       425 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                      ++...... +.+..++..+..+|.+.|++++|.+.+++.++..+
T Consensus       267 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          267 YKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             -------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            66665432 23567889999999999999999999999887543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.44  E-value=4.4e-13  Score=125.72  Aligned_cols=165  Identities=17%  Similarity=0.151  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhc-------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQI-------ENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKE------NVVP  191 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~  191 (526)
                      .+..+...|...|++++|+.+|+++...       .......++..+...+...|++++|.+.+++.++.      +..+
T Consensus        29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  108 (311)
T 3nf1_A           29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP  108 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            4455556666666666666666665542       11123455666666666677777777666666543      1112


Q ss_pred             CCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------
Q 043068          192 PDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV---------KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNR------  255 (526)
Q Consensus       192 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------  255 (526)
                      ....++..+...+...|++++|.+.+++. ..         ......+..+...+...|++++|++.|+++.+.      
T Consensus       109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  188 (311)
T 3nf1_A          109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG  188 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence            23455666666666666666666666554 10         112335566666666777777777777666553      


Q ss_pred             CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068          256 GCRP-NELTYNAMIYGLCINGRVDEAKMLMAKMRL  289 (526)
Q Consensus       256 g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  289 (526)
                      +..| ...++..+...|...|++++|...++++.+
T Consensus       189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            1111 233456666666677777777777666653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.40  E-value=2.5e-10  Score=110.17  Aligned_cols=161  Identities=11%  Similarity=0.005  Sum_probs=83.0

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCH----HHHHH
Q 043068          128 KLIKAYGDRGNVKAAIFWFHQAKQIENGACL----YSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDV----STYTT  199 (526)
Q Consensus       128 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~  199 (526)
                      .+...+...|++++|...+++........+.    .+++.+...+...|++++|.+.+++......-..+.    .++..
T Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   98 (373)
T 1hz4_A           19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   98 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            3344555677777777777776654422222    134555566666777777777776665421001111    22445


Q ss_pred             HHHHHHHcCChhhHHHHHHhC-------CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHH
Q 043068          200 MIRGYCKMGMIENAKKVFDVM-------TVK--P-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRP----NELTYN  265 (526)
Q Consensus       200 li~~~~~~g~~~~A~~~~~~~-------~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~  265 (526)
                      +...+...|++++|.+.+++.       +..  | ....+..+...+...|++++|...+++........    ...++.
T Consensus        99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  178 (373)
T 1hz4_A           99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  178 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence            555566666666666655543       111  1 12234445555556666666666666554432110    123344


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Q 043068          266 AMIYGLCINGRVDEAKMLMAKMR  288 (526)
Q Consensus       266 ~li~~~~~~g~~~~a~~~~~~~~  288 (526)
                      .+...+...|++++|...+++..
T Consensus       179 ~la~~~~~~g~~~~A~~~l~~a~  201 (373)
T 1hz4_A          179 MLIQCSLARGDLDNARSQLNRLE  201 (373)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Confidence            45555555555555555555554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.40  E-value=2.7e-10  Score=109.88  Aligned_cols=297  Identities=13%  Similarity=0.106  Sum_probs=180.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC-H----HHHHHHHHHHHHcCChhhHHHHHHhC----CCCCC----HH
Q 043068          161 YNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD-V----STYTTMIRGYCKMGMIENAKKVFDVM----TVKPN----LL  227 (526)
Q Consensus       161 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~----~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~  227 (526)
                      .......+...|++++|...+++.....  +++ .    .+++.+...+...|++++|.+.+++.    ...++    ..
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   94 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            3344556777899999999999988764  322 2    25667777888889999998888775    11112    23


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNR----GCR--P-NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFK----DNV  296 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~  296 (526)
                      ++..+...+...|++++|...+++..+.    +..  | ....+..+...+...|++++|...+++..+....    ...
T Consensus        95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  174 (373)
T 1hz4_A           95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  174 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence            3566777888889999888888877653    211  2 2345566777788888888888888887654211    123


Q ss_pred             HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHH
Q 043068          297 STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPD--VKSYE----VVINGFCKIGKSDEAISLLKEMRARGLKP---TVF  367 (526)
Q Consensus       297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~  367 (526)
                      .++..+...+...|++++|...+++.......++  .....    ..+..+...|++++|...+++.......+   ...
T Consensus       175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  254 (373)
T 1hz4_A          175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  254 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence            4566677778888888888888887765311111  11111    22334667788888888887776542211   122


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHccc----CCCCcCHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043068          368 SFNAVFRILVENGELDRAILLLKQMPQ----MDCLPNFV-SYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSC  442 (526)
Q Consensus       368 ~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~-~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~  442 (526)
                      .+..+...+...|++++|...+++...    .+..++.. .+..+...+.. .|+.++|...+++.+.....      ..
T Consensus       255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~l~~al~~~~~------~g  327 (373)
T 1hz4_A          255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ-AGRKSDAQRVLLDALKLANR------TG  327 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHH------HC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhcc------cc
Confidence            455666777777888888877776653    12112222 23333333333 37777777777776643110      11


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          443 LLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       443 l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                      .+..+...|  +....+++++....+
T Consensus       328 ~~~~~~~~g--~~~~~ll~~~~~~~~  351 (373)
T 1hz4_A          328 FISHFVIEG--EAMAQQLRQLIQLNT  351 (373)
T ss_dssp             CCHHHHTTH--HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcc--HHHHHHHHHHHhCCC
Confidence            122333444  455556666665555

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.40  E-value=1.6e-10  Score=111.78  Aligned_cols=230  Identities=7%  Similarity=-0.020  Sum_probs=128.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC---C-CCHHhHHHH
Q 043068          234 NGFCKKGELEEAKKCMNEMMNRGC-RPN----ELTYNAMIYGLCINGRVDEAKMLMAKMRLN--GF---K-DNVSTHKSM  302 (526)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~---~-~~~~~~~~l  302 (526)
                      ..+...|++++|+..|++..+... .++    ..++..+...|...|++++|...+++..+.  ..   . ....+++.+
T Consensus       109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  188 (378)
T 3q15_A          109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI  188 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence            334455555555555555543210 011    234455555555566666665555555432  00   0 113345556


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 043068          303 LKGLCVVGKFDQAVGYLRNVMEA----NMN-PDVKSYEVVINGFCKIGKSDEAISLLKEMRA-----RGLKPTVFSFNAV  372 (526)
Q Consensus       303 i~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l  372 (526)
                      ...|...|++++|.+.+++..+.    +.. ....++..+...|...|++++|+..+++..+     .. +....++..+
T Consensus       189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l  267 (378)
T 3q15_A          189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGL  267 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHH
Confidence            66666666666666666655442    100 1123566667777777777777777777655     32 2225566777


Q ss_pred             HHHHHHcCCHHHHHHHHHHcccCC---CCcCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 043068          373 FRILVENGELDRAILLLKQMPQMD---CLPNFVSYNTIICGLCMAKGR---MQDVEDLVDRMIRSGHNLD-FTMYSCLLK  445 (526)
Q Consensus       373 i~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~ll~~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~~  445 (526)
                      ...+.+.|++++|...+++..+..   -.|........+..+....|+   +.+|...+++   .+..|+ ...+..+..
T Consensus       268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~  344 (378)
T 3q15_A          268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAA  344 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHH
Confidence            777777888888887777765421   112322222333344444466   6666666665   222222 346667888


Q ss_pred             HHHhCCCHHHHHHHHHHHHHcC
Q 043068          446 GYCEEGNVENVMQIAHEMVTKK  467 (526)
Q Consensus       446 ~~~~~g~~~~a~~~~~~m~~~~  467 (526)
                      .|.+.|++++|...|++.++..
T Consensus       345 ~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          345 VFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHH
Confidence            8888888888888888877654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.39  E-value=2.3e-10  Score=110.66  Aligned_cols=304  Identities=9%  Similarity=-0.047  Sum_probs=211.0

Q ss_pred             CHHHHHHHHHHH--HcCCCHHHHHHHHHHHHhcC--CCCC--hhhHHHHHHH--HHhcCChhHHH---------HHHHHH
Q 043068          122 SDFFISKLIKAY--GDRGNVKAAIFWFHQAKQIE--NGAC--LYSYNSLLGV--LVRVNSIKLAE---------EFFHQI  184 (526)
Q Consensus       122 ~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~--~~~~--~~~~~~li~~--~~~~g~~~~A~---------~~~~~~  184 (526)
                      ++.+-+.|-..|  ...+++++|..+++++....  .+.|  ...|-.++..  ..-.+.++.+.         +.++.+
T Consensus         9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i   88 (378)
T 3q15_A            9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI   88 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence            344556666677  78999999999999876532  2223  3334444432  22234444455         666666


Q ss_pred             HHcCCCCCC-H---HHHHHHHHHHHHcCChhhHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043068          185 VKENVVPPD-V---STYTTMIRGYCKMGMIENAKKVFDVM-T---VKPN----LLAYNTMINGFCKKGELEEAKKCMNEM  252 (526)
Q Consensus       185 ~~~~~~~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m  252 (526)
                      .... .+.+ .   ..+......+...|++++|...|++. .   ..++    ..++..+...|...|+++.|+..+++.
T Consensus        89 ~~~~-~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a  167 (378)
T 3q15_A           89 ETPQ-KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA  167 (378)
T ss_dssp             HGGG-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hccC-CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            4432 0111 1   12334556677899999999999886 1   1122    457888999999999999999999998


Q ss_pred             HHcC--CC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHhHHHHHHHHHHcCCHHHHHHHHHH
Q 043068          253 MNRG--CR---P-NELTYNAMIYGLCINGRVDEAKMLMAKMRLN----GFK-DNVSTHKSMLKGLCVVGKFDQAVGYLRN  321 (526)
Q Consensus       253 ~~~g--~~---p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~  321 (526)
                      .+..  ..   + ...+++.+...|...|++++|+..+++..+.    +.. ....++..+...|...|++++|...+++
T Consensus       168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~  247 (378)
T 3q15_A          168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK  247 (378)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            7641  11   1 2456788999999999999999999988653    211 1235778899999999999999999999


Q ss_pred             HHH-----cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 043068          322 VME-----ANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGL----KPTVFSFNAVFRILVENGE---LDRAILLL  389 (526)
Q Consensus       322 ~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~---~~~a~~~~  389 (526)
                      ..+     .... ...++..+...|.+.|++++|...+++..+...    +.....+..+...+...|+   +++|+..+
T Consensus       248 al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~  326 (378)
T 3q15_A          248 AAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF  326 (378)
T ss_dssp             HHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            887     4333 377888999999999999999999999876421    1123355666667777888   88888888


Q ss_pred             HHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043068          390 KQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIR  430 (526)
Q Consensus       390 ~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~  430 (526)
                      ++..   ..|+...+...+..+....|++++|...+++.++
T Consensus       327 ~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          327 EKKN---LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhCC---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8743   3344444433444444456999999999999875

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.37  E-value=4.2e-09  Score=108.07  Aligned_cols=392  Identities=10%  Similarity=0.017  Sum_probs=272.1

Q ss_pred             ChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCC---HH
Q 043068           67 NPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGN---VK  140 (526)
Q Consensus        67 ~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~  140 (526)
                      .+.+.+..|+..+..+|      .+..+|..+++.+.+.+.++.++.++++..   +.....|...+..-.+.|+   ++
T Consensus        47 ~~~d~i~~lE~~l~~np------~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~  120 (679)
T 4e6h_A           47 DESDVIGKLNDMIEEQP------TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAA  120 (679)
T ss_dssp             CCSCHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHH
T ss_pred             CCHHHHHHHHHHHHHCc------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHH
Confidence            45566767777776654      467789999999999999999999999765   5566788888888888888   99


Q ss_pred             HHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCh--------hHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHH----
Q 043068          141 AAIFWFHQAKQIEN-GACLYSYNSLLGVLVRVNSI--------KLAEEFFHQIVKENVV--PPDVSTYTTMIRGYC----  205 (526)
Q Consensus       141 ~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~----  205 (526)
                      .+..+|++.....+ .|++..|...+....+.++.        +...++|+..+..-+.  +.+...|...+....    
T Consensus       121 ~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~  200 (679)
T 4e6h_A          121 VIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP  200 (679)
T ss_dssp             HHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc
Confidence            99999999986552 37788898888877776654        3345788877754223  345678888887654    


Q ss_pred             -----HcCChhhHHHHHHhC-CCCC--CHHHHHHHHHHHHhcC-------------CHHHHHHHHHHHHHc--CCC----
Q 043068          206 -----KMGMIENAKKVFDVM-TVKP--NLLAYNTMINGFCKKG-------------ELEEAKKCMNEMMNR--GCR----  258 (526)
Q Consensus       206 -----~~g~~~~A~~~~~~~-~~~p--~~~~~~~li~~~~~~g-------------~~~~A~~~~~~m~~~--g~~----  258 (526)
                           ..++++.+.++|++. .++.  -..+|......--..+             +++.|...+.++...  ++.    
T Consensus       201 ~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p  280 (679)
T 4e6h_A          201 VNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLP  280 (679)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred             cCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence                 344578899999887 3221  1234433322211111             233444555543321  111    


Q ss_pred             -----------C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCH
Q 043068          259 -----------P-----N---ELTYNAMIYGLCING-------RVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKF  312 (526)
Q Consensus       259 -----------p-----~---~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  312 (526)
                                 |     +   ...|...+.---..+       ..+.+..+|+++...- +-....|...+..+...|+.
T Consensus       281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~  359 (679)
T 4e6h_A          281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTD  359 (679)
T ss_dssp             SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCC
T ss_pred             cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcH
Confidence                       1     1   133444443322222       1345667888887653 66788899999999999999


Q ss_pred             HHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---------CCCC------------HHHHH
Q 043068          313 DQAV-GYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARG---------LKPT------------VFSFN  370 (526)
Q Consensus       313 ~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~~~~~  370 (526)
                      ++|. ++|++..... +.+...|...+....+.|++++|.++|+++....         ..|+            ...|.
T Consensus       360 ~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi  438 (679)
T 4e6h_A          360 STVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC  438 (679)
T ss_dssp             TTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence            9997 9999998764 3467778888999999999999999999987631         0132            23677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHcccC-C-CCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043068          371 AVFRILVENGELDRAILLLKQMPQM-D-CLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYC  448 (526)
Q Consensus       371 ~li~~~~~~g~~~~a~~~~~~~~~~-~-~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  448 (526)
                      ..+....+.|+.+.|.++|..+.+. + ..+......+.+.  .+..++.+.|.++|+..++. ++-+...|...+....
T Consensus       439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE--~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~  515 (679)
T 4e6h_A          439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE--YHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLI  515 (679)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH--HTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence            7888888899999999999999875 2 1222332223332  23335689999999999987 4447788889999888


Q ss_pred             hCCCHHHHHHHHHHHHHcCCC
Q 043068          449 EEGNVENVMQIAHEMVTKKGR  469 (526)
Q Consensus       449 ~~g~~~~a~~~~~~m~~~~~~  469 (526)
                      ..|+.+.|..+|++.++..+.
T Consensus       516 ~~~~~~~AR~lferal~~~~~  536 (679)
T 4e6h_A          516 YVNEESQVKSLFESSIDKISD  536 (679)
T ss_dssp             HHTCHHHHHHHHHHHTTTSSS
T ss_pred             hCCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999998863

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.37  E-value=2.3e-10  Score=97.95  Aligned_cols=162  Identities=14%  Similarity=0.157  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043068          195 STYTTMIRGYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLC  272 (526)
Q Consensus       195 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  272 (526)
                      ..+..+...+...|++++|.+.++++ .. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            34555566666666666666666665 21 2345556666666666666666666666666552 224555666666666


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 043068          273 INGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAIS  352 (526)
Q Consensus       273 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  352 (526)
                      ..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.+
T Consensus        88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHH
Confidence            6666666666666665543 345555566666666666666666666666555322 45555666666666666666666


Q ss_pred             HHHHHHH
Q 043068          353 LLKEMRA  359 (526)
Q Consensus       353 ~~~~m~~  359 (526)
                      .++++.+
T Consensus       166 ~~~~~~~  172 (186)
T 3as5_A          166 HFKKANE  172 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.35  E-value=1.1e-10  Score=100.03  Aligned_cols=159  Identities=13%  Similarity=0.084  Sum_probs=84.4

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068          126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC  205 (526)
Q Consensus       126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~  205 (526)
                      +..+...+...|++++|+..|+++....+ .+...+..+...+...|++++|.+.++++.+..  +.+..++..+...+.
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           11 YRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence            34455555555666666666655544332 334555555555666666666666666655553  445555555555555


Q ss_pred             HcCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043068          206 KMGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKML  283 (526)
Q Consensus       206 ~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~  283 (526)
                      ..|++++|.+.++++  ..+.+...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~  166 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALPH  166 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHHH
Confidence            555555555555554  1122344455555555555555555555555554421 2344555555555555555555555


Q ss_pred             HHHHH
Q 043068          284 MAKMR  288 (526)
Q Consensus       284 ~~~~~  288 (526)
                      ++++.
T Consensus       167 ~~~~~  171 (186)
T 3as5_A          167 FKKAN  171 (186)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.31  E-value=1e-10  Score=121.45  Aligned_cols=161  Identities=13%  Similarity=0.096  Sum_probs=74.9

Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC-CHHHHHHHHHH
Q 043068          158 LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP-NLLAYNTMING  235 (526)
Q Consensus       158 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~  235 (526)
                      ..+|+.|..++.+.|++++|++.|++.++..  |.+..+|..+..+|.+.|++++|++.|++. .+.| +...|..+..+
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~   86 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3445555555555555555555555555543  444455555555555555555555555443 2222 23444444444


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHH
Q 043068          236 FCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQA  315 (526)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  315 (526)
                      |.+.|++++|++.|++.++.... +...|..+..+|.+.|++++|+..|++..+.. +.+...+..+...+...|++++|
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence            44455555555544444443211 33444444444444444444444444444432 23334444444444444444444


Q ss_pred             HHHHHHH
Q 043068          316 VGYLRNV  322 (526)
Q Consensus       316 ~~~~~~~  322 (526)
                      .+.++++
T Consensus       165 ~~~~~ka  171 (723)
T 4gyw_A          165 DERMKKL  171 (723)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.31  E-value=3.8e-10  Score=100.61  Aligned_cols=207  Identities=10%  Similarity=-0.007  Sum_probs=148.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043068          225 NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLK  304 (526)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  304 (526)
                      |...+......+...|++++|++.|++.++....++...+..+..++...|++++|+..+++..+.. +.+..++..+..
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~   84 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA   84 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence            5567777888888888888888888888877544677777778888888888888888888888765 456677888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 043068          305 GLCVVGKFDQAVGYLRNVMEANMNPDV-------KSYEVVINGFCKIGKSDEAISLLKEMRARGLKPT---VFSFNAVFR  374 (526)
Q Consensus       305 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~  374 (526)
                      .|...|++++|...+++..+..+. +.       ..|..+...+...|++++|++.|++..+.  .|+   ...+..+..
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~  161 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence            888888888888888888876543 44       45777788888899999999999988875  454   456666666


Q ss_pred             HHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043068          375 ILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLK  445 (526)
Q Consensus       375 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  445 (526)
                      +|...|     ..+++++...+ ..+...|......   ..+.+++|...+++.++..+. +..+...+..
T Consensus       162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~~---~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~  222 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEKAK---ADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQ  222 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHHH---HHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence            765544     34445544432 2334455544432   237789999999999986544 5555554443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.30  E-value=1.3e-10  Score=120.69  Aligned_cols=163  Identities=14%  Similarity=0.089  Sum_probs=77.5

Q ss_pred             CHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043068          193 DVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYG  270 (526)
Q Consensus       193 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  270 (526)
                      +..+|+.|..+|.+.|++++|++.|++. .+.| +...|..+..+|.+.|++++|++.|++.++.... +...|..+..+
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~   86 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            3444555555555555555555555443 2222 2444455555555555555555555555444211 34444455555


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 043068          271 LCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEA  350 (526)
Q Consensus       271 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  350 (526)
                      +.+.|++++|++.|++..+.. +.+...+..+...|.+.|++++|++.|++.++..+. +...+..+...|...|++++|
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence            555555555555555544433 333444445555555555555555555554444322 344444444555555555555


Q ss_pred             HHHHHHHH
Q 043068          351 ISLLKEMR  358 (526)
Q Consensus       351 ~~~~~~m~  358 (526)
                      .+.++++.
T Consensus       165 ~~~~~kal  172 (723)
T 4gyw_A          165 DERMKKLV  172 (723)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.30  E-value=4e-10  Score=100.44  Aligned_cols=201  Identities=14%  Similarity=0.079  Sum_probs=116.4

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 043068          122 SDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMI  201 (526)
Q Consensus       122 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li  201 (526)
                      ++..+..+...+...|++++|+..|++.....+.++...+..+..++...|++++|++.|++.++..  |.+..+|..+.
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~   83 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGKS   83 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHHH
Confidence            3445555666666677777777777766665543455555556666667777777777777776654  55566666677


Q ss_pred             HHHHHcCChhhHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 043068          202 RGYCKMGMIENAKKVFDVM-TVKP-NL-------LAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN---ELTYNAMIY  269 (526)
Q Consensus       202 ~~~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~  269 (526)
                      .++...|++++|.+.+++. ...| +.       ..|..+...+...|++++|++.|++.++.  .|+   ...+..+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~  161 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence            7777777777777776665 2222 23       34666666667777777777777777654  343   344555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043068          270 GLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYE  335 (526)
Q Consensus       270 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  335 (526)
                      +|...|     ..+++++...+ ..+...+....  ....+.+++|...+++..+..+. +..+..
T Consensus       162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~  218 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQ  218 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred             HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHH
Confidence            554333     33344444332 22333333222  23345567777777777776433 333333

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.27  E-value=8.6e-10  Score=100.68  Aligned_cols=208  Identities=7%  Similarity=0.020  Sum_probs=92.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043068          165 LGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEE  244 (526)
Q Consensus       165 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  244 (526)
                      ++-..-.|.+..++.-...+..    ......-.-+.++|...|+++..      +.-.|....+..+...+ ..+    
T Consensus        20 ikn~fy~G~yq~~i~e~~~~~~----~~~~~~~~~~~Rs~iAlg~~~~~------~~~~~~~~a~~~la~~~-~~~----   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIEKFSK----VTDNTLLFYKAKTLLALGQYQSQ------DPTSKLGKVLDLYVQFL-DTK----   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHHTSSC----CCCHHHHHHHHHHHHHTTCCCCC------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred             HHHHHHhhHHHHHHHHHHhcCc----cchHHHHHHHHHHHHHcCCCccC------CCCCHHHHHHHHHHHHh-ccc----
Confidence            3444556777776663322211    11223333445666666666542      12233333333333322 111    


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068          245 AKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGF-KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVM  323 (526)
Q Consensus       245 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  323 (526)
                      |+..|++..+.+ .++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            455555554443 23344444555555555555555555555544331 1234444455555555555555555555554


Q ss_pred             HcCCCC-----CHHHHHHHHHHH--HhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 043068          324 EANMNP-----DVKSYEVVINGF--CKIG--KSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQM  392 (526)
Q Consensus       324 ~~~~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~  392 (526)
                      +.  .|     +..+...++.++  ...|  ++.+|..+|+++.+.  .|+..+-..++.++.+.|++++|.+.++.+
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l  237 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL  237 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            43  22     123333333331  1112  455555555555433  233222222223444455555555555433

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.26  E-value=7.2e-11  Score=108.71  Aligned_cols=201  Identities=13%  Similarity=0.071  Sum_probs=110.9

Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC--------
Q 043068          158 LYSYNSLLGVLVRVNSIKLAEEFFHQIVKE------NVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV--------  222 (526)
Q Consensus       158 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~--------  222 (526)
                      ..++..+...+...|++++|+..|+++++.      +..+....++..+...|...|++++|.+.+++. ..        
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  122 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF  122 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence            445556666666666666666666665543      111233455666666666666666666666654 11        


Q ss_pred             -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 043068          223 -KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNR------GCRP-NELTYNAMIYGLCINGRVDEAKMLMAKMRLN----  290 (526)
Q Consensus       223 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----  290 (526)
                       +.....+..+...+...|++++|+..|++..+.      +..| ...++..+...|...|++++|..+++++.+.    
T Consensus       123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  202 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK  202 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence             122445666777777777777777777776654      1122 2445667777777778888877777776542    


Q ss_pred             ---CCCCC-HHhHHHHHHHHHHcCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068          291 ---GFKDN-VSTHKSMLKGLCVVGK------FDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA  359 (526)
Q Consensus       291 ---~~~~~-~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  359 (526)
                         ...+. ...+..+...+...+.      +..+...++..... ......++..+...|...|++++|...+++..+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               11122 2223333333332222      22222222211111 111345677788888888888888888887764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.19  E-value=2.2e-10  Score=105.34  Aligned_cols=229  Identities=11%  Similarity=-0.009  Sum_probs=160.1

Q ss_pred             HhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHHhHHHH
Q 043068          237 CKKGELEEAKKCMNEMMNR-------GCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLN------GF-KDNVSTHKSM  302 (526)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l  302 (526)
                      ...|++++|+..|++.++.       ..+....++..+...|...|++++|+..++++.+.      +- +....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4567888888888777652       11224567888999999999999999999998754      21 2345678899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcC-----C--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHHH
Q 043068          303 LKGLCVVGKFDQAVGYLRNVMEAN-----M--NPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR------GLKP-TVFS  368 (526)
Q Consensus       303 i~~~~~~g~~~~A~~~~~~~~~~~-----~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~  368 (526)
                      ...|...|++++|...+++..+..     .  .....++..+...|...|++++|+..++++.+.      +..| ...+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            999999999999999999988651     1  224567888999999999999999999998764      1122 3467


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHcccC-------CCCcCHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHCCCCC
Q 043068          369 FNAVFRILVENGELDRAILLLKQMPQM-------DCLPNFVSYNTIICGLCMAKGR------MQDVEDLVDRMIRSGHNL  435 (526)
Q Consensus       369 ~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~~~~~~ll~~~~~~~g~------~~~a~~~~~~~~~~~~~p  435 (526)
                      +..+...|...|++++|.++++++.+.       ...+....+...+..+....+.      +.++...++.... ..+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence            888999999999999999999998752       1123322333333332222122      2222222222211 1122


Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043068          436 DFTMYSCLLKGYCEEGNVENVMQIAHEMVTK  466 (526)
Q Consensus       436 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  466 (526)
                      ...++..+..+|.+.|++++|...+++.++.
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3467888999999999999999999998764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.19  E-value=1.5e-08  Score=92.47  Aligned_cols=176  Identities=9%  Similarity=0.035  Sum_probs=85.3

Q ss_pred             HHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068          213 AKKVFDVM-T-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGC-RPNELTYNAMIYGLCINGRVDEAKMLMAKMRL  289 (526)
Q Consensus       213 A~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  289 (526)
                      |...|++. . -.++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            44445443 1 123444444555556666666666666665554432 11344455555666666666666666666654


Q ss_pred             cCCCC-----CHHhHHHHHHHH--HHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068          290 NGFKD-----NVSTHKSMLKGL--CVVG--KFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR  360 (526)
Q Consensus       290 ~~~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  360 (526)
                      .  .|     +..+...++.++  ...|  +..+|..+|+++.+.  .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus       165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred             c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3  23     233444444442  2223  566666666665443  233222233333555666666666666544331


Q ss_pred             C---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068          361 G---------LKPTVFSFNAVFRILVENGELDRAILLLKQMPQ  394 (526)
Q Consensus       361 ~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  394 (526)
                      -         -+-+..++..+|......|+  +|.++++++.+
T Consensus       241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~  281 (310)
T 3mv2_B          241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK  281 (310)
T ss_dssp             HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence            0         01133444344444444454  55555555555

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.14  E-value=3.4e-09  Score=98.37  Aligned_cols=171  Identities=10%  Similarity=-0.066  Sum_probs=86.3

Q ss_pred             ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHH
Q 043068          173 SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-------TVKPN-LLAYNTMINGFCKKGELEE  244 (526)
Q Consensus       173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~li~~~~~~g~~~~  244 (526)
                      ++++|...|++.                ...|...|++++|.+.|++.       +..++ ..+|+.+..+|.+.|++++
T Consensus        32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~   95 (292)
T 1qqe_A           32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN   95 (292)
T ss_dssp             HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence            366666666655                23455667777776666554       11111 3456666677777777777


Q ss_pred             HHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHHcCCHH
Q 043068          245 AKKCMNEMMNRGCR-PN----ELTYNAMIYGLCIN-GRVDEAKMLMAKMRLNGFK-DN----VSTHKSMLKGLCVVGKFD  313 (526)
Q Consensus       245 A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~  313 (526)
                      |+..|++.++.... .+    ..++..+...|... |++++|+..|++..+.... .+    ..++..+...+.+.|+++
T Consensus        96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  175 (292)
T 1qqe_A           96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI  175 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence            77776666543100 01    23455555555553 6666666555555432100 00    223444555555555555


Q ss_pred             HHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068          314 QAVGYLRNVMEANMNPDV------KSYEVVINGFCKIGKSDEAISLLKEMRA  359 (526)
Q Consensus       314 ~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~  359 (526)
                      +|+..|++..+.......      ..|..+..++...|++++|+..|++..+
T Consensus       176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  227 (292)
T 1qqe_A          176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS  227 (292)
T ss_dssp             HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            555555555543322111      1334444445555555555555555443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.13  E-value=8.6e-09  Score=95.60  Aligned_cols=200  Identities=12%  Similarity=-0.027  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc--C-ChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043068          176 LAEEFFHQIVKENVVPPDVSTYTTMIRGYCKM--G-MIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEM  252 (526)
Q Consensus       176 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g-~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  252 (526)
                      +|.+++.+..+.-  ++....| .+    .+.  + ++++|...|++.            +..|...|++++|.+.|++.
T Consensus         3 ~a~~~~~~a~k~~--~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~a   63 (292)
T 1qqe_A            3 DPVELLKRAEKKG--VPSSGFM-KL----FSGSDSYKFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKA   63 (292)
T ss_dssp             CHHHHHHHHHHHS--SCCCTHH-HH----HSCCSHHHHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHh--CcCCCcc-hh----cCCCCCccHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHH
Confidence            4666666666552  3321122 21    222  2 477887777765            44677889999999998887


Q ss_pred             HHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHhHHHHHHHHHHc-CCHHHHHHHHHH
Q 043068          253 MNR----GCRPN-ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGF---KDN--VSTHKSMLKGLCVV-GKFDQAVGYLRN  321 (526)
Q Consensus       253 ~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~~~~~li~~~~~~-g~~~~A~~~~~~  321 (526)
                      .+.    |..++ ..+|+.+..+|.+.|++++|+..+++..+...   .+.  ..++..+...|... |++++|+..|++
T Consensus        64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~  143 (292)
T 1qqe_A           64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL  143 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            654    21111 45788888888899999999988888764310   111  34677777778775 888888888887


Q ss_pred             HHHcCCCC-C----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHH
Q 043068          322 VMEANMNP-D----VKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV------FSFNAVFRILVENGELDRAILLLK  390 (526)
Q Consensus       322 ~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~  390 (526)
                      ..+..... +    ..++..+...|.+.|++++|+..|++..+.......      ..|..+..++...|++++|...|+
T Consensus       144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  223 (292)
T 1qqe_A          144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ  223 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            76542111 1    345677777888888888888888887765322111      145666677777888888888888


Q ss_pred             Hccc
Q 043068          391 QMPQ  394 (526)
Q Consensus       391 ~~~~  394 (526)
                      +..+
T Consensus       224 ~al~  227 (292)
T 1qqe_A          224 EGQS  227 (292)
T ss_dssp             GGGC
T ss_pred             HHHh
Confidence            7776

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.12  E-value=5.5e-09  Score=95.18  Aligned_cols=195  Identities=8%  Similarity=-0.001  Sum_probs=125.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-CHHHH
Q 043068          260 NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN---VSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN-P-DVKSY  334 (526)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~  334 (526)
                      +...+..+...+.+.|++++|+..|+++.+.. +.+   ...+..+..+|.+.|++++|...|+++.+..+. | ....+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            45566666677777788888888888777653 233   556677777777788888888888777776332 1 23456


Q ss_pred             HHHHHHHHh--------cCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHH
Q 043068          335 EVVINGFCK--------IGKSDEAISLLKEMRARGLKPTV-FSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYN  405 (526)
Q Consensus       335 ~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  405 (526)
                      ..+..++..        .|++++|+..|+++.+.  .|+. .....+.......+..                  ...+.
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~------------------~~~~~  152 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKL------------------ARKQY  152 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHH------------------HHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHH------------------HHHHH
Confidence            666667766        77777777777777665  2332 1221111110000000                  00123


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHcCCCccch
Q 043068          406 TIICGLCMAKGRMQDVEDLVDRMIRSGHNL--DFTMYSCLLKGYCEE----------GNVENVMQIAHEMVTKKGRLLKL  473 (526)
Q Consensus       406 ~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~  473 (526)
                      .+...+.. .|++++|...++++++..+..  ....+..+..+|...          |++++|...++++++..+..+..
T Consensus       153 ~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  231 (261)
T 3qky_A          153 EAARLYER-RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL  231 (261)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHHHHHH-ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence            33444545 499999999999998864432  245788888888866          89999999999999999877654


Q ss_pred             hhh
Q 043068          474 KNF  476 (526)
Q Consensus       474 ~~~  476 (526)
                      ...
T Consensus       232 ~~a  234 (261)
T 3qky_A          232 RTA  234 (261)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.11  E-value=7.3e-09  Score=90.76  Aligned_cols=159  Identities=9%  Similarity=0.063  Sum_probs=73.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 043068          231 TMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNA----------------MIYGLCINGRVDEAKMLMAKMRLNGFKD  294 (526)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~----------------li~~~~~~g~~~~a~~~~~~~~~~~~~~  294 (526)
                      .....+...|++++|+..|++..+.... +...|..                +..+|.+.|++++|+..|++..+.. +.
T Consensus         9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~   86 (208)
T 3urz_A            9 QKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN   86 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence            3444555666666666666666554211 1222333                4555555555555555555555443 34


Q ss_pred             CHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043068          295 NVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGK--SDEAISLLKEMRARGLKPTVFSFNAV  372 (526)
Q Consensus       295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l  372 (526)
                      +...+..+...+...|++++|...|+++++..+. +..++..+...|...|.  .+.+...++....  ..|....+...
T Consensus        87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~  163 (208)
T 3urz_A           87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRD  163 (208)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHH
Confidence            4455555555555555555555555555554433 44455555554443332  2223333333321  11111122222


Q ss_pred             HHHHHHcCCHHHHHHHHHHccc
Q 043068          373 FRILVENGELDRAILLLKQMPQ  394 (526)
Q Consensus       373 i~~~~~~g~~~~a~~~~~~~~~  394 (526)
                      ..++...|++++|+..|++..+
T Consensus       164 g~~~~~~~~~~~A~~~~~~al~  185 (208)
T 3urz_A          164 GLSKLFTTRYEKARNSLQKVIL  185 (208)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHTT
T ss_pred             HHHHHHccCHHHHHHHHHHHHH
Confidence            3333444555555555555554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.10  E-value=9e-09  Score=82.53  Aligned_cols=129  Identities=19%  Similarity=0.271  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC  307 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  307 (526)
                      .|..+...+...|++++|.++|+++.+.+.. +...+..+...+...|++++|..+++++.+.. +.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            3445555666666666666666666554322 44555555566666666666666666665543 334455555556666


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068          308 VVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA  359 (526)
Q Consensus       308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  359 (526)
                      ..|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            666666666666665554322 445555555556666666666666655544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.09  E-value=7e-09  Score=94.48  Aligned_cols=64  Identities=11%  Similarity=0.022  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043068          124 FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGAC--LYSYNSLLGVLVRVNSIKLAEEFFHQIVKE  187 (526)
Q Consensus       124 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  187 (526)
                      ..+..+...+.+.|++++|+..|+++....+...  ...+..+..++.+.|++++|+..|+++++.
T Consensus        16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~   81 (261)
T 3qky_A           16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI   81 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            3444445555555555555555555554432110  334445555555555555555555555554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.09  E-value=4.9e-09  Score=84.14  Aligned_cols=126  Identities=17%  Similarity=0.298  Sum_probs=63.3

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068          126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC  205 (526)
Q Consensus       126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~  205 (526)
                      +..+...+...|++++|..+|+++...++ .+...+..+...+...|++++|.+.++++.+.+  +.+...+..+...+.
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHH
Confidence            34445555555555555555555554432 234455555555555555555555555555543  344445555555555


Q ss_pred             HcCChhhHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043068          206 KMGMIENAKKVFDVM-T-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMN  254 (526)
Q Consensus       206 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  254 (526)
                      ..|++++|.+.++++ . .+.+...+..++..+.+.|++++|.+.|+++.+
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            555555555555444 1 122334444444555555555555555554443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.07  E-value=1.5e-07  Score=86.81  Aligned_cols=218  Identities=8%  Similarity=-0.003  Sum_probs=120.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----HHc--
Q 043068          136 RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVN--SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY----CKM--  207 (526)
Q Consensus       136 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~--  207 (526)
                      ....++|+++++++...++ .+..+|+.--.++...|  +++++++.++.++..+  |.+..+|+.-...+    .+.  
T Consensus        46 ~e~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~  122 (306)
T 3dra_A           46 EEYSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNN  122 (306)
T ss_dssp             TCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccc
Confidence            3344678888887777764 34666777777777777  7888888888887776  66666776655555    444  


Q ss_pred             -CChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC------
Q 043068          208 -GMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELE--EAKKCMNEMMNRGCRPNELTYNAMIYGLCINGR------  276 (526)
Q Consensus       208 -g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~------  276 (526)
                       +++++++++++++  ..+.+...|+.-.-.+.+.|.++  ++++.++++++..+. |...|+.......+.++      
T Consensus       123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~  201 (306)
T 3dra_A          123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT  201 (306)
T ss_dssp             CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence             5566666666665  22335556655555555566655  666666666665444 55555554444444443      


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043068          277 VDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQ-AVGYLRNVMEAN--MNPDVKSYEVVINGFCKIGKSDEAISL  353 (526)
Q Consensus       277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~  353 (526)
                      ++++++.++++.... +.|...|+-....+.+.|+... +..+..++.+.+  -..+...+..++..|.+.|+.++|+++
T Consensus       202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~  280 (306)
T 3dra_A          202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV  280 (306)
T ss_dssp             HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence            455555555554443 3444444444444444444222 223333333221  012344444445555555555555555


Q ss_pred             HHHHH
Q 043068          354 LKEMR  358 (526)
Q Consensus       354 ~~~m~  358 (526)
                      ++.+.
T Consensus       281 ~~~l~  285 (306)
T 3dra_A          281 YDLLK  285 (306)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.05  E-value=9.6e-09  Score=90.00  Aligned_cols=134  Identities=12%  Similarity=0.087  Sum_probs=89.5

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 043068          127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK  206 (526)
Q Consensus       127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~  206 (526)
                      ..+...|.+.|++++|+..|++..+..+ .+...+..+..++...|++++|+..|++.++..  |.+..++..+..+|..
T Consensus        58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~  134 (208)
T 3urz_A           58 TELALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYL  134 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence            3477777888888888888888877664 457777788888888888888888888888776  6777788888777765


Q ss_pred             cCC--hhhHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043068          207 MGM--IENAKKVFDVMT-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYN  265 (526)
Q Consensus       207 ~g~--~~~A~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  265 (526)
                      .|+  .+.+...++... ..|....+..+..++...|++++|+..|++.++.  .|+.....
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~  194 (208)
T 3urz_A          135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK  194 (208)
T ss_dssp             HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence            543  344555555552 1222223444555566677788888888877765  55544333

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.03  E-value=2.1e-08  Score=92.64  Aligned_cols=164  Identities=10%  Similarity=-0.000  Sum_probs=121.7

Q ss_pred             CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHHHHHH-
Q 043068          156 ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAYNTMI-  233 (526)
Q Consensus       156 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li-  233 (526)
                      .+...+..+...+.+.|++++|+..|++.++..  |.+...+..+...+.+.|++++|.+.++++ ...|+........ 
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            345566677778888888888888888888876  778888888888888888888888888887 3455554333322 


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHHcCC
Q 043068          234 NGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN--VSTHKSMLKGLCVVGK  311 (526)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~  311 (526)
                      ..+...++.++|+..|++..+.... +...+..+...+...|++++|+..|+++.+.. +.+  ...+..++..+...|+
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~  270 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGT  270 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCT
T ss_pred             HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCC
Confidence            3356677778888888888776432 66777788888888888888888888887764 222  5677778888888888


Q ss_pred             HHHHHHHHHHHH
Q 043068          312 FDQAVGYLRNVM  323 (526)
Q Consensus       312 ~~~A~~~~~~~~  323 (526)
                      .++|...|++..
T Consensus       271 ~~~a~~~~r~al  282 (287)
T 3qou_A          271 GDALASXYRRQL  282 (287)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHH
Confidence            888877777654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.03  E-value=1.5e-07  Score=86.80  Aligned_cols=223  Identities=9%  Similarity=0.009  Sum_probs=151.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH----HHc---C
Q 043068          240 GELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCING--RVDEAKMLMAKMRLNGFKDNVSTHKSMLKGL----CVV---G  310 (526)
Q Consensus       240 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g  310 (526)
                      ...++|++++++++..+.. ....|+.--..+...|  ++++++++++.+.... +.+..+|+.-...+    ...   +
T Consensus        47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~  124 (306)
T 3dra_A           47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF  124 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence            3345777777777776433 4555666666666666  7888888888777654 44455555443333    444   6


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC------H
Q 043068          311 KFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSD--EAISLLKEMRARGLKPTVFSFNAVFRILVENGE------L  382 (526)
Q Consensus       311 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~------~  382 (526)
                      ++++++.+++++.+.+++ +..+|+.-.-.+.+.|.++  ++++.++++.+.... |...|+.-...+.+.|.      +
T Consensus       125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~  202 (306)
T 3dra_A          125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI  202 (306)
T ss_dssp             CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred             CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence            778888888888887655 7777877777777778777  888888888776433 66667666666666665      7


Q ss_pred             HHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 043068          383 DRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGR-MQDVEDLVDRMIRSG--HNLDFTMYSCLLKGYCEEGNVENVMQI  459 (526)
Q Consensus       383 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~-~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~  459 (526)
                      +++++.+++++... +-|...|+-+-..+... |+ .+++..+.+++.+.+  -..+...+..++.+|.+.|+.++|.++
T Consensus       203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~  280 (306)
T 3dra_A          203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERF-DRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV  280 (306)
T ss_dssp             HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHT-TCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhc-CCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence            88888888887743 23455555555444443 54 444556666665543  133778888888999999999999999


Q ss_pred             HHHHHH-cCC
Q 043068          460 AHEMVT-KKG  468 (526)
Q Consensus       460 ~~~m~~-~~~  468 (526)
                      ++.+.+ .++
T Consensus       281 ~~~l~~~~Dp  290 (306)
T 3dra_A          281 YDLLKSKYNP  290 (306)
T ss_dssp             HHHHHHTTCG
T ss_pred             HHHHHhccCh
Confidence            999886 455

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.01  E-value=1.1e-08  Score=87.01  Aligned_cols=161  Identities=10%  Similarity=0.023  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHHHHHHHH-HH
Q 043068          160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAYNTMING-FC  237 (526)
Q Consensus       160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~-~~  237 (526)
                      .+..+...+.+.|++++|+..|++.++..  |.+...+..+..++.+.|++++|.+.+++. ...|+...+..+... +.
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH   85 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence            34455556667777777777777766654  566677777777777777777777777766 233333322222111 11


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHHcCCHHHHH
Q 043068          238 KKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKD-NVSTHKSMLKGLCVVGKFDQAV  316 (526)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~  316 (526)
                      ..++..+|+..|++..+.... +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus        86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            212223355566665554222 45555566666666666666666666665543111 2335555666666666666666


Q ss_pred             HHHHHHH
Q 043068          317 GYLRNVM  323 (526)
Q Consensus       317 ~~~~~~~  323 (526)
                      ..|++.+
T Consensus       165 ~~y~~al  171 (176)
T 2r5s_A          165 SKYRRQL  171 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.01  E-value=2.5e-09  Score=111.41  Aligned_cols=172  Identities=9%  Similarity=-0.058  Sum_probs=122.0

Q ss_pred             HcCCCHHHHHHHHHHHH--------hcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068          134 GDRGNVKAAIFWFHQAK--------QIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC  205 (526)
Q Consensus       134 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~  205 (526)
                      ...|++++|++.|+++.        ...+ .+...+..+...+.+.|++++|++.|+++++.+  |.+...|..+..++.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~  478 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL  478 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence            67888889988888887        4432 446677778888888888888888888888776  677788888888888


Q ss_pred             HcCChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043068          206 KMGMIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKML  283 (526)
Q Consensus       206 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~  283 (526)
                      ..|++++|.+.|++. ...| +...|..+..++.+.|++++ ++.|++..+.... +...|..+..++.+.|++++|+..
T Consensus       479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence            888888888888776 2233 45677777777888888888 8888777776433 566777777777777777777777


Q ss_pred             HHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068          284 MAKMRLNGFKDNVSTHKSMLKGLCVVGK  311 (526)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~li~~~~~~g~  311 (526)
                      |+++.+.. +.+...+..+..++...++
T Consensus       557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPTS-RHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred             HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence            77766543 2334555556665554443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.98  E-value=1.3e-08  Score=106.04  Aligned_cols=168  Identities=11%  Similarity=0.022  Sum_probs=128.6

Q ss_pred             HhcCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH
Q 043068          237 CKKGELEEAKKCMNEMM--------NRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV  308 (526)
Q Consensus       237 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  308 (526)
                      ...|++++|++.+++..        +.. +.+...+..+..++.+.|++++|+..|+++.+.. +.+...+..+..+|..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            67788888888888887        332 2356677888888888888888888888887765 5677788888888888


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043068          309 VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILL  388 (526)
Q Consensus       309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  388 (526)
                      .|++++|...|++..+..+. +...|..+..+|.+.|++++ ++.|++..+.+ +-+...|..+..++.+.|++++|++.
T Consensus       480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            88888888888888887654 66778888888888888888 88888887763 22566788888888888888888888


Q ss_pred             HHHcccCCCCcCH-HHHHHHHHHH
Q 043068          389 LKQMPQMDCLPNF-VSYNTIICGL  411 (526)
Q Consensus       389 ~~~~~~~~~~p~~-~~~~~ll~~~  411 (526)
                      |+++.+.  .|+. ..+..+..++
T Consensus       557 ~~~al~l--~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          557 LDEVPPT--SRHFTTARLTSAVTL  578 (681)
T ss_dssp             HHTSCTT--STTHHHHHHHHHHHT
T ss_pred             HHhhccc--CcccHHHHHHHHHHH
Confidence            8888873  4664 3444444443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.98  E-value=1.8e-08  Score=85.53  Aligned_cols=155  Identities=10%  Similarity=-0.016  Sum_probs=83.6

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHh
Q 043068           95 YTAITDVLLSHSLISIAASLLKNSNK---LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGV-LVR  170 (526)
Q Consensus        95 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~  170 (526)
                      +...+..+.+.|++++|...+++...   .++..+..+...|...|++++|+..|+++....+  +...+..+... +..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence            44555666666666666666665542   2334555666666666666666666666554442  33222221111 112


Q ss_pred             cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 043068          171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPN---LLAYNTMINGFCKKGELEEAK  246 (526)
Q Consensus       171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~li~~~~~~g~~~~A~  246 (526)
                      .+....|+..+++.++..  |.+...+..+..++...|++++|...|+++ ...|+   ...+..+...+...|+.++|.
T Consensus        87 ~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           87 QAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            222334556666666554  455666666666666666666666666654 33332   335555666666666666666


Q ss_pred             HHHHHHH
Q 043068          247 KCMNEMM  253 (526)
Q Consensus       247 ~~~~~m~  253 (526)
                      ..|++.+
T Consensus       165 ~~y~~al  171 (176)
T 2r5s_A          165 SKYRRQL  171 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.97  E-value=2.8e-09  Score=87.96  Aligned_cols=140  Identities=7%  Similarity=-0.041  Sum_probs=64.3

Q ss_pred             HHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcC
Q 043068           60 KVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDR  136 (526)
Q Consensus        60 ~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~  136 (526)
                      .++..+|+.++|+..|..+....|.      ....+..++.+|.+.|++++|...+++..   +.++..+..+...|...
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~~~p~------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~   78 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTPSPRQ------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE   78 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCSHHH------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHcChHHHHHHHHHHhcccCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3444456666666666666544321      11224445555555555555555554332   22333444455555555


Q ss_pred             CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHH-HHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068          137 GNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEF-FHQIVKENVVPPDVSTYTTMIRGYCKMG  208 (526)
Q Consensus       137 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g  208 (526)
                      |++++|+..|++..+.++ .+..+|..+...+.+.|++++|.+. +++.++..  |.+..+|......+...|
T Consensus        79 ~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           79 ENTDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCC
T ss_pred             CchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence            555555555555444442 2344444444455555544443332 24444443  444444444444444433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.97  E-value=4.9e-08  Score=86.58  Aligned_cols=191  Identities=10%  Similarity=-0.009  Sum_probs=123.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHH
Q 043068          260 NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKD--NVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDV--KSYE  335 (526)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~  335 (526)
                      +...+..+...+.+.|++++|+..|+++.+.....  ....+..+..+|.+.|++++|+..|+++.+..+....  ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            34556666778888999999999999988753111  1356777888999999999999999998887544221  2444


Q ss_pred             HHHHHHHh------------------cCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHcccCC
Q 043068          336 VVINGFCK------------------IGKSDEAISLLKEMRARGLKPTVF-SFNAVFRILVENGELDRAILLLKQMPQMD  396 (526)
Q Consensus       336 ~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~  396 (526)
                      .+..++..                  .|++++|+..|+++.+.  .|+.. .+......    +...      ..+.   
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----~~~~------~~~~---  147 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----VFLK------DRLA---  147 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----HHHH------HHHH---
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----HHHH------HHHH---
Confidence            45555544                  34566666666666654  23321 11111100    0000      0000   


Q ss_pred             CCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068          397 CLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLD--FTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLL  471 (526)
Q Consensus       397 ~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~  471 (526)
                           .....+...+... |++++|...++++++..+...  ...+..+..+|.+.|++++|.+.++++...++...
T Consensus       148 -----~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          148 -----KYEYSVAEYYTER-GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL  218 (225)
T ss_dssp             -----HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred             -----HHHHHHHHHHHHc-CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence                 0011223344554 999999999999998644311  25788899999999999999999999999887554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.96  E-value=2.2e-08  Score=92.53  Aligned_cols=178  Identities=12%  Similarity=-0.029  Sum_probs=140.2

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043068          108 ISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKE  187 (526)
Q Consensus       108 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  187 (526)
                      .+.....++...+.+...+..+...+...|++++|+..|+++....+ .+...+..+...+.+.|++++|...++++...
T Consensus       102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~  180 (287)
T 3qou_A          102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ  180 (287)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence            34455556555555556677888889999999999999999988775 46788889999999999999999999999876


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHH
Q 043068          188 NVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-T-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRP-NELTY  264 (526)
Q Consensus       188 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~  264 (526)
                      .  |............+.+.++.++|.+.+++. . .+.+...+..+...+...|++++|+..|.++.+..... +...+
T Consensus       181 ~--p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~  258 (287)
T 3qou_A          181 D--QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR  258 (287)
T ss_dssp             G--CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred             h--cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence            5  333333333344467788888898888876 2 24567889999999999999999999999999874331 26788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Q 043068          265 NAMIYGLCINGRVDEAKMLMAKMR  288 (526)
Q Consensus       265 ~~li~~~~~~g~~~~a~~~~~~~~  288 (526)
                      ..++..+...|+.++|...|++..
T Consensus       259 ~~l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          259 XTFQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcHHHHHHHHH
Confidence            999999999999999999888765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.96  E-value=8.7e-08  Score=84.09  Aligned_cols=159  Identities=9%  Similarity=0.006  Sum_probs=66.8

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043068          298 THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIG----KSDEAISLLKEMRARGLKPTVFSFNAVF  373 (526)
Q Consensus       298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~li  373 (526)
                      .+..+...|...+++++|+.+|++..+.|   +...+..+...|.. +    ++++|++.|++..+.|   +...+..|.
T Consensus        20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg   92 (212)
T 3rjv_A           20 AQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA   92 (212)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence            33334444444444444444444444332   23333334434433 3    4444444444444332   233333444


Q ss_pred             HHHHH----cCCHHHHHHHHHHcccCCCCcC---HHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043068          374 RILVE----NGELDRAILLLKQMPQMDCLPN---FVSYNTIICGLCMA---KGRMQDVEDLVDRMIRSGHNLDFTMYSCL  443 (526)
Q Consensus       374 ~~~~~----~g~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  443 (526)
                      ..|..    .+++++|+++|++..+.+  |+   ...+..+-..+...   .++.++|..++++..+.  ..+...+..|
T Consensus        93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~L  168 (212)
T 3rjv_A           93 RVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWA  168 (212)
T ss_dssp             HHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHH
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHH
Confidence            44433    444555555555444433  21   23333333333220   13455555555555543  1123344444


Q ss_pred             HHHHHhC-C-----CHHHHHHHHHHHHHcC
Q 043068          444 LKGYCEE-G-----NVENVMQIAHEMVTKK  467 (526)
Q Consensus       444 ~~~~~~~-g-----~~~~a~~~~~~m~~~~  467 (526)
                      ...|.+. |     +.++|...|++..+.|
T Consensus       169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            4444432 2     5555555555555554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.96  E-value=7.2e-08  Score=85.52  Aligned_cols=62  Identities=11%  Similarity=0.131  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043068          194 VSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPN----LLAYNTMINGFCKKGELEEAKKCMNEMMNR  255 (526)
Q Consensus       194 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  255 (526)
                      ...+..+...+.+.|++++|...|+++ ...|+    ...+..+..++.+.|++++|+..|+++.+.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~   70 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL   70 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            344555566666667777777766665 11121    235556666666677777777777766665

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.95  E-value=2.2e-08  Score=93.56  Aligned_cols=130  Identities=12%  Similarity=-0.035  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC--CHH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRGC---RP--NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGF---KD--NVS  297 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~  297 (526)
                      +|+.+...|.+.|++++|+..|++..+.-.   .+  ...++..+...|.. |++++|+..|++..+...   .+  ...
T Consensus        78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~  156 (307)
T 2ifu_A           78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE  156 (307)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence            455555666666666666666665543210   00  12344455555555 666666666655543210   00  023


Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068          298 THKSMLKGLCVVGKFDQAVGYLRNVMEANM----NPD-VKSYEVVINGFCKIGKSDEAISLLKEMR  358 (526)
Q Consensus       298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~  358 (526)
                      ++..+...|.+.|++++|+..|++..+...    .+. ...+..+...+...|++++|+..|++..
T Consensus       157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            444455555555555555555555443210    000 1133334444444455555555555554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.95  E-value=5.4e-08  Score=85.41  Aligned_cols=140  Identities=6%  Similarity=-0.069  Sum_probs=62.0

Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC----ChhhHHHHH
Q 043068          142 AIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG----MIENAKKVF  217 (526)
Q Consensus       142 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~  217 (526)
                      |+++|++..+.+   +..++..+...|...+++++|++.|++..+.|    +...+..|...|.. +    ++++|.++|
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            444444444332   34444444445555555555555555554443    34444444444444 3    444455544


Q ss_pred             HhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 043068          218 DVMTVKPNLLAYNTMINGFCK----KGELEEAKKCMNEMMNRGCR-PNELTYNAMIYGLCI----NGRVDEAKMLMAKMR  288 (526)
Q Consensus       218 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~  288 (526)
                      ++.-...+...+..|...|..    .+++++|++.|++..+.|.. .....+..|...|..    .+++++|..+|++..
T Consensus        77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  156 (212)
T 3rjv_A           77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS  156 (212)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            444112233444444444443    44455555555544443211 013344444444444    444455555554444


Q ss_pred             H
Q 043068          289 L  289 (526)
Q Consensus       289 ~  289 (526)
                      +
T Consensus       157 ~  157 (212)
T 3rjv_A          157 S  157 (212)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.94  E-value=8.2e-09  Score=85.12  Aligned_cols=136  Identities=13%  Similarity=0.028  Sum_probs=70.5

Q ss_pred             HHhCCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 043068          102 LLSHSLISIAASLLKNSNKLSDF---FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAE  178 (526)
Q Consensus       102 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  178 (526)
                      +...|++++|...+++....++.   .+..+...|.+.|++++|++.|++..+..+ .+..+|..+..++.+.|++++|+
T Consensus         7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~   85 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAV   85 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHH
Confidence            33345555555555555443332   233455556666666666666666555543 34555555666666666666666


Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHH-HHhC-CCCC-CHHHHHHHHHHHHhcC
Q 043068          179 EFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKV-FDVM-TVKP-NLLAYNTMINGFCKKG  240 (526)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~-~~~p-~~~~~~~li~~~~~~g  240 (526)
                      ..|++.++..  |.+..+|..+...|.+.|++++|.+. +++. .+.| +...|......+...|
T Consensus        86 ~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           86 ECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            6666665554  44555566666666666655554433 2332 2222 3344444444444443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.93  E-value=2.4e-08  Score=102.13  Aligned_cols=147  Identities=10%  Similarity=-0.026  Sum_probs=69.7

Q ss_pred             CCHHHHHHHHHhcCC---CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 043068          106 SLISIAASLLKNSNK---LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFH  182 (526)
Q Consensus       106 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  182 (526)
                      |++++|...+++...   .+...+..+...|...|++++|++.|++..+..+ .+...+..+...+...|++++|.+.|+
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            445555555554332   2233455555555555555555555555554442 234555555555555555555555555


Q ss_pred             HHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 043068          183 QIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMINGFCKK---GELEEAKKCMNEMMNR  255 (526)
Q Consensus       183 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~  255 (526)
                      +..+..  |.+...+..+..+|.+.|++++|.+.+++. .. +.+...+..+...+...   |++++|.+.+++..+.
T Consensus        82 ~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           82 QASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            555554  445555555555555555555555555554 11 22344555555555555   5555555555555554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.92  E-value=1.2e-06  Score=87.22  Aligned_cols=204  Identities=11%  Similarity=-0.037  Sum_probs=135.4

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 043068          243 EEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNV  322 (526)
Q Consensus       243 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  322 (526)
                      +.+..+|++++... +-+...|...+..+.+.|+.++|..++++....  +.+...+.    .|....+.++.   ++.+
T Consensus       196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l  265 (493)
T 2uy1_A          196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDL  265 (493)
T ss_dssp             HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHH
T ss_pred             HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHH
Confidence            45678899888763 346778888888888999999999999999887  44433333    23322222222   2222


Q ss_pred             HHcC---------C---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 043068          323 MEAN---------M---NPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVE-NGELDRAILLL  389 (526)
Q Consensus       323 ~~~~---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~  389 (526)
                      .+.-         .   ......|...+....+.++.+.|.++|++. ... ..+...|...+..-.. .++.+.|.++|
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~if  343 (493)
T 2uy1_A          266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIF  343 (493)
T ss_dssp             HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred             HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence            2210         0   011245777777777888999999999999 321 2244444433322222 34699999999


Q ss_pred             HHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043068          390 KQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVT  465 (526)
Q Consensus       390 ~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  465 (526)
                      +...+.. .-+...+...+..... .|+.+.|..+|+++.     -....|...+..-...|+.+.+..+++++.+
T Consensus       344 e~al~~~-~~~~~~~~~yid~e~~-~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          344 SSGLLKH-PDSTLLKEEFFLFLLR-IGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHH-HTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9988742 1223445556655444 499999999999972     2578888888877888999999999988875

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.91  E-value=4.8e-08  Score=99.83  Aligned_cols=162  Identities=7%  Similarity=-0.042  Sum_probs=115.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHH
Q 043068          136 RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKK  215 (526)
Q Consensus       136 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  215 (526)
                      .|++++|++.|+++.+..+ .+...|..+...+.+.|++++|.+.|++..+..  |.+..++..+..+|...|++++|.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            4788899999998877653 457788888889999999999999999998876  7778889999999999999999999


Q ss_pred             HHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHc
Q 043068          216 VFDVM-TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCIN---GRVDEAKMLMAKMRLN  290 (526)
Q Consensus       216 ~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~  290 (526)
                      .+++. .. +.+...+..+..++.+.|++++|.+.|++..+.... +...+..+...+...   |+.++|.+.+++..+.
T Consensus        79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            98886 22 335778888889999999999999999998887433 567788888888888   8999999999988876


Q ss_pred             CCCCCHHhHHHH
Q 043068          291 GFKDNVSTHKSM  302 (526)
Q Consensus       291 ~~~~~~~~~~~l  302 (526)
                      + +.+...+..+
T Consensus       158 ~-p~~~~~~~~l  168 (568)
T 2vsy_A          158 G-VGAVEPFAFL  168 (568)
T ss_dssp             T-CCCSCHHHHT
T ss_pred             C-CcccChHHHh
Confidence            5 3344444433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.84  E-value=1.5e-07  Score=82.54  Aligned_cols=91  Identities=9%  Similarity=-0.084  Sum_probs=50.7

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 043068           96 TAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIK  175 (526)
Q Consensus        96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  175 (526)
                      ..++..+...|++++|...+++...+++..+..+...|...|++++|+..|++.....+ .+...|..+..++...|+++
T Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~   88 (213)
T 1hh8_A           10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYD   88 (213)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcccHH
Confidence            34455555555666666655555544555555555555556666666666655555442 33455555555555556666


Q ss_pred             HHHHHHHHHHHc
Q 043068          176 LAEEFFHQIVKE  187 (526)
Q Consensus       176 ~A~~~~~~~~~~  187 (526)
                      +|++.|++..+.
T Consensus        89 ~A~~~~~~al~~  100 (213)
T 1hh8_A           89 LAIKDLKEALIQ  100 (213)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            666655555553

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.84  E-value=2.7e-06  Score=79.21  Aligned_cols=174  Identities=11%  Similarity=0.022  Sum_probs=112.8

Q ss_pred             HHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc-C-C
Q 043068          133 YGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVN-SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKM-G-M  209 (526)
Q Consensus       133 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~  209 (526)
                      ..+.+..++|+++++++...++ .+..+|+.--..+...| .+++++++++.++...  |.+..+|+.-..++.+. + +
T Consensus        64 ~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~  140 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQD  140 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSC
T ss_pred             HHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCC
Confidence            3344555678888888877764 45666777777777777 4888888888888776  67777887777777766 6 7


Q ss_pred             hhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---
Q 043068          210 IENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELE--------EAKKCMNEMMNRGCRPNELTYNAMIYGLCINGR---  276 (526)
Q Consensus       210 ~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---  276 (526)
                      +++++++++++  ..+.|...|+.-.-.+.+.|.++        ++++.++++++..+. |...|+.....+.+.++   
T Consensus       141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~  219 (349)
T 3q7a_A          141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET  219 (349)
T ss_dssp             CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence            77777777776  22345666665555554444444        777777777776544 66677766666666554   


Q ss_pred             ----HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068          277 ----VDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGK  311 (526)
Q Consensus       277 ----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  311 (526)
                          ++++++.++++.... +-|...|+-+-..+.+.|+
T Consensus       220 ~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          220 SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence                566666666666544 4555555554444444443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.81  E-value=5.7e-07  Score=78.70  Aligned_cols=128  Identities=11%  Similarity=-0.016  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 043068          196 TYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCING  275 (526)
Q Consensus       196 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  275 (526)
                      .+..+...+...|++++|.+.|++.- .|+...|..+...+.+.|++++|++.|++..+... .+...+..+..++...|
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~   85 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTE   85 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcc
Confidence            34455666667777777777777663 55666777777777777777777777777766532 25566677777777777


Q ss_pred             CHHHHHHHHHHHHHcCCCCC----------------HHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043068          276 RVDEAKMLMAKMRLNGFKDN----------------VSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN  326 (526)
Q Consensus       276 ~~~~a~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  326 (526)
                      ++++|+..|+++.+.. +.+                ...+..+...|.+.|++++|...+++..+..
T Consensus        86 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           86 KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            7777777777776543 222                2556666777777777777777777766654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.80  E-value=2.2e-07  Score=86.69  Aligned_cols=96  Identities=10%  Similarity=-0.076  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-H
Q 043068          227 LAYNTMINGFCKKGELEEAKKCMNEMMNRGCRP-----NELTYNAMIYGLCINGRVDEAKMLMAKMRLN----GFKDN-V  296 (526)
Q Consensus       227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~  296 (526)
                      .++..+...|.. |++++|+..|++..+.....     ...++..+...|.+.|++++|+..|++..+.    +..+. .
T Consensus       117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  195 (307)
T 2ifu_A          117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY  195 (307)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence            355566666666 77777777776665431110     1345666777777778888888777776542    11111 1


Q ss_pred             HhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068          297 STHKSMLKGLCVVGKFDQAVGYLRNVM  323 (526)
Q Consensus       297 ~~~~~li~~~~~~g~~~~A~~~~~~~~  323 (526)
                      ..+..++..+...|++++|...|++..
T Consensus       196 ~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          196 KKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            255556666777788888888888877

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.77  E-value=3.5e-06  Score=78.48  Aligned_cols=224  Identities=10%  Similarity=0.077  Sum_probs=133.8

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHc-C-CHH
Q 043068          237 CKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCING-RVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV-G-KFD  313 (526)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~  313 (526)
                      .+.+..++|++++++++..+.. +..+|+.--..+...| .+++++.+++.+.... +.+..+|+--...+.+. + +++
T Consensus        65 ~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             HhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence            3344455677777777766433 4455666555566666 4777777777776654 45555666555555555 5 667


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----
Q 043068          314 QAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSD--------EAISLLKEMRARGLKPTVFSFNAVFRILVENGE----  381 (526)
Q Consensus       314 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----  381 (526)
                      +++++++++.+...+ |..+|+.-.-.+.+.|.++        ++++.++++.+.... |...|+.....+.+.++    
T Consensus       143 ~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~  220 (349)
T 3q7a_A          143 SEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS  220 (349)
T ss_dssp             HHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence            777777777766544 6666665555555555555        777777777665432 55666666666666665    


Q ss_pred             ---HHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCC--------------------HHHHHHHHHHHHHCC-----
Q 043068          382 ---LDRAILLLKQMPQMDCLPN-FVSYNTIICGLCMAKGR--------------------MQDVEDLVDRMIRSG-----  432 (526)
Q Consensus       382 ---~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~--------------------~~~a~~~~~~~~~~~-----  432 (526)
                         ++++++.+++++...  |+ ...|+-+-..+ ...|+                    ..+..+....+...+     
T Consensus       221 ~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (349)
T 3q7a_A          221 SRSLQDELIYILKSIHLI--PHNVSAWNYLRGFL-KHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT  297 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH-HHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred             hHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-HhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence               567777777766632  33 33444333332 22233                    233334444443322     


Q ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 043068          433 HNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKK  467 (526)
Q Consensus       433 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  467 (526)
                      -.++...+.-|++.|...|+.++|.++++.+.++-
T Consensus       298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~  332 (349)
T 3q7a_A          298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEY  332 (349)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Confidence            13578888999999999999999999999987543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.77  E-value=1.5e-05  Score=79.30  Aligned_cols=172  Identities=7%  Similarity=-0.063  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043068          277 VDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKE  356 (526)
Q Consensus       277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  356 (526)
                      .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..++++.... +. +...|.    .|+...+.++.   ++.
T Consensus       195 ~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~-~~~l~~----~y~~~~e~~~~---~~~  264 (493)
T 2uy1_A          195 ESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD-GMFLSL----YYGLVMDEEAV---YGD  264 (493)
T ss_dssp             HHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-SSHHHH----HHHHHTTCTHH---HHH
T ss_pred             HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-cHHHHH----HHHhhcchhHH---HHH
Confidence            355778899988754 667888999999999999999999999999988 32 433333    23332222222   222


Q ss_pred             HHHCC---------CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHH--HHHHHHHhcCCCHHHHH
Q 043068          357 MRARG---------LKP---TVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYN--TIICGLCMAKGRMQDVE  422 (526)
Q Consensus       357 m~~~~---------~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~~g~~~~a~  422 (526)
                      +.+.-         ..+   ....|...+....+.++.+.|.++|+++ ... ..+...|.  +.+..  ...++.+.|.
T Consensus       265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~--~~~~d~~~ar  340 (493)
T 2uy1_A          265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY--YATGSRATPY  340 (493)
T ss_dssp             HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH--HHHCCSHHHH
T ss_pred             HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH--HHCCChHHHH
Confidence            22210         001   1245667777777888999999999999 321 12333443  22322  2224799999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043068          423 DLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEM  463 (526)
Q Consensus       423 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  463 (526)
                      .+|+..++.-. -++..|...++...+.|+.+.|..+|+++
T Consensus       341 ~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          341 NIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999998643 25667777888888899999999999997

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.73  E-value=6.5e-07  Score=71.04  Aligned_cols=97  Identities=14%  Similarity=0.087  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC  307 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  307 (526)
                      .+......|.+.|++++|++.|++.++.... +...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence            4555566666666666666666666555322 45555666666666666666666666665543 444555666666666


Q ss_pred             HcCCHHHHHHHHHHHHHcC
Q 043068          308 VVGKFDQAVGYLRNVMEAN  326 (526)
Q Consensus       308 ~~g~~~~A~~~~~~~~~~~  326 (526)
                      ..|++++|.+.|++.++..
T Consensus        93 ~~~~~~~A~~~~~~al~l~  111 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQVD  111 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHC
T ss_pred             HCCCHHHHHHHHHHHHHHC
Confidence            6666666666666665553

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.73  E-value=8.9e-07  Score=73.79  Aligned_cols=127  Identities=16%  Similarity=0.067  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC  307 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  307 (526)
                      .+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            4555556666666666666666666554322 45555566666666666666666666665543 344555556666666


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHH
Q 043068          308 VVGKFDQAVGYLRNVMEANMNPDVKSYEV--VINGFCKIGKSDEAISLLKEM  357 (526)
Q Consensus       308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m  357 (526)
                      ..|++++|...+++..+.... +...+..  .+..+...|++++|++.+...
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            666666666666666554332 3333322  222244555566665555544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.72  E-value=3e-07  Score=82.79  Aligned_cols=190  Identities=8%  Similarity=-0.066  Sum_probs=107.6

Q ss_pred             cCCCHHHHHHHHHHHHhcCCCCChhhHHHH-------HHHHHhcCChhHHHHHHHHHHHc------------CC------
Q 043068          135 DRGNVKAAIFWFHQAKQIENGACLYSYNSL-------LGVLVRVNSIKLAEEFFHQIVKE------------NV------  189 (526)
Q Consensus       135 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~------------~~------  189 (526)
                      ..++...|.+.|.++...++ .....|..+       ...+.+.++..+++..+..-++.            |.      
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~   96 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY   96 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred             cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence            46777777777777776663 335566665       45555555555555555544431            10      


Q ss_pred             -CCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH
Q 043068          190 -VPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN--ELTYN  265 (526)
Q Consensus       190 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~  265 (526)
                       +..-...+..+...+...|++++|.++|+.+ ...|+......+...+.+.+++++|+..|+...... .|.  ...+.
T Consensus        97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~  175 (282)
T 4f3v_A           97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV  175 (282)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred             ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence             0000223444566666777777777777766 223433355555566667777777777776443321 110  22455


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043068          266 AMIYGLCINGRVDEAKMLMAKMRLNGFKDN--VSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN  326 (526)
Q Consensus       266 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  326 (526)
                      .+..++.+.|++++|+..|++.......|.  .........++.+.|+.++|..+|+++...+
T Consensus       176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            566667777777777777776653322132  2344555666666777777777777766653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.72  E-value=2.7e-06  Score=78.65  Aligned_cols=164  Identities=16%  Similarity=0.084  Sum_probs=113.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHH
Q 043068          302 MLKGLCVVGKFDQAVGYLRNVMEANMN-PDV----KSYEVVINGFCKIGKSDEAISLLKEMRARGLK-PT----VFSFNA  371 (526)
Q Consensus       302 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~  371 (526)
                      .+..+...|++++|..++++..+.... ++.    ..+..+...+...|++++|+..+++..+.... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            356677788888888888887764322 121    12334666666777888888888888764222 22    236788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHccc----C-CCCcCH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHC----CCCCC-HHHH
Q 043068          372 VFRILVENGELDRAILLLKQMPQ----M-DCLPNF-VSYNTIICGLCMAKGRMQDVEDLVDRMIRS----GHNLD-FTMY  440 (526)
Q Consensus       372 li~~~~~~g~~~~a~~~~~~~~~----~-~~~p~~-~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~  440 (526)
                      +...|...|++++|+..|+++.+    . +..+.. .++..+...+... |++++|.+.+++.++.    +..+. ..+|
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~-~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD-SRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            88888888999998888888773    1 122222 2555666666554 9999999999887753    22222 6789


Q ss_pred             HHHHHHHHhCCC-HHHHHHHHHHHHHc
Q 043068          441 SCLLKGYCEEGN-VENVMQIAHEMVTK  466 (526)
Q Consensus       441 ~~l~~~~~~~g~-~~~a~~~~~~m~~~  466 (526)
                      ..+..+|.+.|+ +++|.+.+++.++.
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            999999999994 69999999888653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.72  E-value=6.8e-07  Score=82.75  Aligned_cols=60  Identities=5%  Similarity=-0.189  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCC-HHHHHHHHHHc
Q 043068          333 SYEVVINGFCKIGKSDEAISLLKEMRAR----GLKPT-VFSFNAVFRILVENGE-LDRAILLLKQM  392 (526)
Q Consensus       333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~-~~~a~~~~~~~  392 (526)
                      ++..+...|.+.|++++|+..+++..+.    +..+. ..+|..+..++.+.|+ +++|.+.+++.
T Consensus       198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            3444444444455555554444444321    11111 2344444444555552 34444444443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.71  E-value=1.1e-07  Score=87.43  Aligned_cols=99  Identities=12%  Similarity=0.068  Sum_probs=65.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043068          225 NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLK  304 (526)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  304 (526)
                      +...+..+...+.+.|++++|+..|++.++.... +...|..+..+|.+.|++++|+..++++.+.. +.+...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            3455666666777777777777777777665322 56666667777777777777777777766543 445566666777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHc
Q 043068          305 GLCVVGKFDQAVGYLRNVMEA  325 (526)
Q Consensus       305 ~~~~~g~~~~A~~~~~~~~~~  325 (526)
                      +|...|++++|...|++..+.
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l  101 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSL  101 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            777777777777777666554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.71  E-value=1e-06  Score=81.46  Aligned_cols=167  Identities=8%  Similarity=-0.013  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--H
Q 043068          227 LAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE-----LTYNAMIYGLCINGRVDEAKMLMAKMRLNGF---KDN--V  296 (526)
Q Consensus       227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~  296 (526)
                      ..+...+..+...|++++|.+.+++..+.......     ..+..+...+...|++++|+..+++..+...   .+.  .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            34555667777888888888888877765322111     1233455556677788888888887764321   111  3


Q ss_pred             HhHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCC-C--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCC-C
Q 043068          297 STHKSMLKGLCVVGKFDQAVGYLRNVME---ANMN-P--DVKSYEVVINGFCKIGKSDEAISLLKEMRARG----LKP-T  365 (526)
Q Consensus       297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p-~  365 (526)
                      .+++.+...|...|++++|...+++..+   .... +  ...++..+...|...|++++|+..+++..+..    ... -
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            4677778888888888888888877762   2111 1  12467777788888888888888888765431    111 1


Q ss_pred             HHHHHHHHHHHHHcCCHHHH-HHHHHHcc
Q 043068          366 VFSFNAVFRILVENGELDRA-ILLLKQMP  393 (526)
Q Consensus       366 ~~~~~~li~~~~~~g~~~~a-~~~~~~~~  393 (526)
                      ..+|..+..+|.+.|++++| ...+++..
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            45677777778888888888 66666554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.69  E-value=9.9e-07  Score=79.43  Aligned_cols=186  Identities=9%  Similarity=-0.031  Sum_probs=134.1

Q ss_pred             hcCChhHHHHHHHHHHHcCCCCCCHHHHHHH-------HHHHHHcCChhhHHHHHHhC-CCCCC----------------
Q 043068          170 RVNSIKLAEEFFHQIVKENVVPPDVSTYTTM-------IRGYCKMGMIENAKKVFDVM-TVKPN----------------  225 (526)
Q Consensus       170 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~-~~~p~----------------  225 (526)
                      ..++...|.+.|.++.+..  |.....|..+       ...+.+.++..+++..+..- ++.|+                
T Consensus        18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence            5799999999999999987  7888999888       56666666666666555543 33332                


Q ss_pred             ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HH
Q 043068          226 ------LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN--VS  297 (526)
Q Consensus       226 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~  297 (526)
                            ...+-.+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...+.. .|.  ..
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~  172 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA  172 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence                  1233456677888899999999998887653  444355556667888999999999998554321 111  23


Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068          298 THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPD--VKSYEVVINGFCKIGKSDEAISLLKEMRAR  360 (526)
Q Consensus       298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  360 (526)
                      .+..+..++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++...
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            667788888888899999888888875433243  335666777888888888888888888876

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.69  E-value=5.1e-07  Score=75.28  Aligned_cols=92  Identities=12%  Similarity=0.141  Sum_probs=51.2

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068          126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC  205 (526)
Q Consensus       126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~  205 (526)
                      +..+...+...|++++|...|++.....+ .+..++..+...+...|++++|.+.+++.++..  |.+..++..+..++.
T Consensus        16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           16 LKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHH
Confidence            44455555556666666666666555442 235555555555666666666666666655554  445555555555555


Q ss_pred             HcCChhhHHHHHHhC
Q 043068          206 KMGMIENAKKVFDVM  220 (526)
Q Consensus       206 ~~g~~~~A~~~~~~~  220 (526)
                      ..|++++|.+.|++.
T Consensus        93 ~~~~~~~A~~~~~~a  107 (166)
T 1a17_A           93 ALGKFRAALRDYETV  107 (166)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHH
Confidence            555555555555544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.67  E-value=1.8e-06  Score=67.77  Aligned_cols=97  Identities=19%  Similarity=0.257  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043068          227 LAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGL  306 (526)
Q Consensus       227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  306 (526)
                      ..|..+...+...|++++|.+.|+++.+... .+..++..+...+.+.|++++|..+++++.+.. +.+..++..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            3444444555555555555555555544321 134444444455555555555555555544432 23344444444455


Q ss_pred             HHcCCHHHHHHHHHHHHHc
Q 043068          307 CVVGKFDQAVGYLRNVMEA  325 (526)
Q Consensus       307 ~~~g~~~~A~~~~~~~~~~  325 (526)
                      ...|++++|...++++.+.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHh
Confidence            5555555555555544443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.64  E-value=1.3e-07  Score=86.93  Aligned_cols=195  Identities=11%  Similarity=-0.004  Sum_probs=136.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043068          260 NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVIN  339 (526)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~  339 (526)
                      +...+..+...+.+.|++++|+..|+++.+.. +.+...+..+...|.+.|++++|...+++..+..+. +...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            55678888899999999999999999998875 567889999999999999999999999999987654 7888999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCH
Q 043068          340 GFCKIGKSDEAISLLKEMRARGLKPTV-FSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRM  418 (526)
Q Consensus       340 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~  418 (526)
                      +|...|++++|+..|++..+.+  |+. ..+...+....+.........    ........+... ...+..+. . |+.
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i-~~~l~~l~-~-~~~  151 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESEL-HSYLTRLI-A-AER  151 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHH-HHHHHHHH-H-HHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHH-HHHHHHHH-H-HHH
Confidence            9999999999999999987642  211 111112222211111111111    111122233333 33333433 3 899


Q ss_pred             HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcC
Q 043068          419 QDVEDLVDRMIRSGHNLD-FTMYSCLLKGYCEE-GNVENVMQIAHEMVTKK  467 (526)
Q Consensus       419 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~  467 (526)
                      ++|.+.+++.++.  .|+ ......+...+.+. +.+++|.++|+++.+..
T Consensus       152 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~  200 (281)
T 2c2l_A          152 ERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR  200 (281)
T ss_dssp             HHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             HHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            9999999988865  444 44455555555555 77899999999887643

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.64  E-value=1.8e-06  Score=68.36  Aligned_cols=117  Identities=14%  Similarity=0.029  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043068          227 LAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGL  306 (526)
Q Consensus       227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  306 (526)
                      ..+..+...+...|++++|...|++...... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence            3445555555555666666666655555421 244455555555555555555555555555443 33444555555555


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043068          307 CVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGK  346 (526)
Q Consensus       307 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  346 (526)
                      ...|++++|...+++..+..+. +...+..+...+...|+
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence            5555555555555555554322 34444445445444443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.64  E-value=3.7e-07  Score=79.12  Aligned_cols=61  Identities=15%  Similarity=-0.067  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIEN-----GACLYSYNSLLGVLVRVNSIKLAEEFFHQIV  185 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  185 (526)
                      .+..+...|...|++++|+..+++......     .....++..+...+...|++++|.+.+++..
T Consensus        28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   93 (203)
T 3gw4_A           28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEER   93 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            444444445555555555555544433100     0112334444444444555555544444443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.63  E-value=1.8e-06  Score=79.88  Aligned_cols=161  Identities=7%  Similarity=-0.002  Sum_probs=81.1

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCC--HHHH
Q 043068          127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGAC-----LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENV--VPPD--VSTY  197 (526)
Q Consensus       127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~--~~~~  197 (526)
                      ...+..+...|++++|.+.+++.........     ...+..+...+...|++++|++.+++..+...  ..+.  ..++
T Consensus        79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  158 (293)
T 2qfc_A           79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE  158 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            3455566677777777777776655432111     11233344455566667777766666654320  0111  3355


Q ss_pred             HHHHHHHHHcCChhhHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CHHH
Q 043068          198 TTMIRGYCKMGMIENAKKVFDVM----TVKPN-----LLAYNTMINGFCKKGELEEAKKCMNEMMNRG----CRP-NELT  263 (526)
Q Consensus       198 ~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~~  263 (526)
                      +.+...|...|++++|.+.|++.    ...|+     ..++..+...|.+.|++++|+..+++..+..    ... -..+
T Consensus       159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~  238 (293)
T 2qfc_A          159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL  238 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            56666666666666666655543    00111     1345555555556666666665555544321    000 1344


Q ss_pred             HHHHHHHHHHcCCHHHH-HHHHHHH
Q 043068          264 YNAMIYGLCINGRVDEA-KMLMAKM  287 (526)
Q Consensus       264 ~~~li~~~~~~g~~~~a-~~~~~~~  287 (526)
                      |..+..+|.+.|++++| ...+++.
T Consensus       239 ~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          239 YYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            55555555555555555 4444443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.63  E-value=1.1e-06  Score=68.93  Aligned_cols=93  Identities=16%  Similarity=0.311  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 043068          160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-T-VKPNLLAYNTMINGFC  237 (526)
Q Consensus       160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~li~~~~  237 (526)
                      .+..+...+...|++++|.+.|+++.+..  +.+..++..+...+.+.|++++|...++++ . .+.+...+..+...+.
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            33444444444444444444444444433  333444444444444444444444444433 1 1123333444444444


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 043068          238 KKGELEEAKKCMNEMMN  254 (526)
Q Consensus       238 ~~g~~~~A~~~~~~m~~  254 (526)
                      ..|++++|...|+++.+
T Consensus        89 ~~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALE  105 (125)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHH
Confidence            44444444444444443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.62  E-value=3.5e-07  Score=75.02  Aligned_cols=99  Identities=15%  Similarity=0.023  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043068          226 LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKG  305 (526)
Q Consensus       226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  305 (526)
                      ...+..+...+.+.|++++|+..|++....... +...|..+..+|...|++++|+..|+++.+.. +.+...+..+..+
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~  113 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence            445666777777777777777777777766332 56667777777777777777777777776654 4556667777777


Q ss_pred             HHHcCCHHHHHHHHHHHHHcC
Q 043068          306 LCVVGKFDQAVGYLRNVMEAN  326 (526)
Q Consensus       306 ~~~~g~~~~A~~~~~~~~~~~  326 (526)
                      |.+.|++++|...|++..+..
T Consensus       114 ~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHHHHHHhC
Confidence            777777777777777777653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.62  E-value=1.9e-06  Score=68.33  Aligned_cols=96  Identities=9%  Similarity=-0.007  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043068          263 TYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC  342 (526)
Q Consensus       263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~  342 (526)
                      .+......|.+.|++++|+..|++..+.. +.+..+|..+..+|.+.|++++|+..+++.++.++. +...|..+..+|.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence            45555666666777777777776666554 455666666666666677777777666666665433 5566666666666


Q ss_pred             hcCChhHHHHHHHHHHHC
Q 043068          343 KIGKSDEAISLLKEMRAR  360 (526)
Q Consensus       343 ~~g~~~~A~~~~~~m~~~  360 (526)
                      ..|++++|++.|++..+.
T Consensus        93 ~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH
Confidence            666666666666666654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.61  E-value=6.9e-07  Score=75.66  Aligned_cols=120  Identities=7%  Similarity=0.052  Sum_probs=70.6

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH-HHHcCCH--HH
Q 043068          238 KKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKG-LCVVGKF--DQ  314 (526)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~  314 (526)
                      ..|++++|+..+++..+... .+...+..+...|...|++++|...|+++.+.. +.+...+..+... +...|++  ++
T Consensus        22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence            34666666666666665532 245566666666666666666666666665543 3445555556666 5566666  66


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068          315 AVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR  360 (526)
Q Consensus       315 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  360 (526)
                      |...++++.+..+. +...+..+...|...|++++|+..|+++.+.
T Consensus       100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            66666666665433 4555666666666666666666666666654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.61  E-value=5.3e-07  Score=76.36  Aligned_cols=132  Identities=9%  Similarity=0.132  Sum_probs=92.6

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCH--H
Q 043068          342 CKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRM--Q  419 (526)
Q Consensus       342 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~--~  419 (526)
                      ...|++++|+..+++..+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+...++...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence            34577777888887776653 2355677777888888888888888888877632 123444555554423334887  9


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhh
Q 043068          420 DVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNF  476 (526)
Q Consensus       420 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  476 (526)
                      +|...++++++..+. +...+..+..+|...|++++|...++++++..+..+.....
T Consensus        99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  154 (177)
T 2e2e_A           99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL  154 (177)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred             HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence            999999999887544 67888889999999999999999999999998876654433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.59  E-value=1.4e-06  Score=69.41  Aligned_cols=95  Identities=12%  Similarity=0.048  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC  307 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  307 (526)
                      .+..+...+...|++++|++.|++..+.... +...+..+...+...|++++|+..++++.+.. +.+...+..+...+.
T Consensus        18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~   95 (133)
T 2lni_A           18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence            3444444444444444444444444433111 33334444444444444444444444444332 223334444444444


Q ss_pred             HcCCHHHHHHHHHHHHH
Q 043068          308 VVGKFDQAVGYLRNVME  324 (526)
Q Consensus       308 ~~g~~~~A~~~~~~~~~  324 (526)
                      +.|++++|...+++..+
T Consensus        96 ~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           96 AMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHH
Confidence            44444444444444433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.59  E-value=5.8e-07  Score=77.86  Aligned_cols=60  Identities=15%  Similarity=0.053  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNR----GCRP--NELTYNAMIYGLCINGRVDEAKMLMAKM  287 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~  287 (526)
                      .+..+...+...|++++|.+.+++..+.    +..+  ....+..+...+...|++++|...+++.
T Consensus        68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (203)
T 3gw4_A           68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS  133 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3444444444445555554444443332    1010  1122344444444555555555554444

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.57  E-value=3.5e-07  Score=79.20  Aligned_cols=150  Identities=15%  Similarity=0.036  Sum_probs=77.3

Q ss_pred             HHHHHHHcCChhhHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC--------------HH
Q 043068          200 MIRGYCKMGMIENAKKVFDVMT--VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCR-PN--------------EL  262 (526)
Q Consensus       200 li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~--------------~~  262 (526)
                      .+......|+++++.+.++.-.  .......+..+...+.+.|++++|+..|++..+.... |+              ..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            3444455666666666665431  1113445667777788888888888888887765221 10              14


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043068          263 TYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC  342 (526)
Q Consensus       263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~  342 (526)
                      .|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+..+. +...+..+...+.
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~  167 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVN  167 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence            55555556666666666666666655543 344555555566666666666666666665554332 4444555555554


Q ss_pred             hcCChhHHH
Q 043068          343 KIGKSDEAI  351 (526)
Q Consensus       343 ~~g~~~~A~  351 (526)
                      ..++.+++.
T Consensus       168 ~~~~~~~~~  176 (198)
T 2fbn_A          168 KLKEARKKD  176 (198)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHHH
Confidence            444444433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.57  E-value=2e-06  Score=81.18  Aligned_cols=131  Identities=11%  Similarity=-0.044  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043068          226 LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN--------------ELTYNAMIYGLCINGRVDEAKMLMAKMRLNG  291 (526)
Q Consensus       226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  291 (526)
                      ...+..+...+.+.|++++|+..|++.++......              ...|..+..+|.+.|++++|+..++++.+..
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            33455555555666666666666666555422211              3556666666666666666666666666554


Q ss_pred             CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 043068          292 FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEA-ISLLKEMR  358 (526)
Q Consensus       292 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~  358 (526)
                       +.+...+..+..+|...|++++|...|++..+..+. +...+..+...+.+.|+.++| ...++.|.
T Consensus       227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             445556666666666666666666666666665433 455566666666666666655 33444443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.57  E-value=3.8e-05  Score=71.21  Aligned_cols=185  Identities=9%  Similarity=0.003  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHH
Q 043068          278 DEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVG--KFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGK-SDEAISLL  354 (526)
Q Consensus       278 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~  354 (526)
                      ++++.+++.+.... +-+..+|+--...+.+.+  .+++++.+++++.+..+. |..+|+.-.-.+...|. ++++++.+
T Consensus        91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            44444444444332 334444444333344444  244555555555554433 44444444444444444 34555555


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcC----
Q 043068          355 KEMRARGLKPTVFSFNAVFRILVEN--------------GELDRAILLLKQMPQMDCLPN-FVSYNTIICGLCMAK----  415 (526)
Q Consensus       355 ~~m~~~~~~p~~~~~~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~----  415 (526)
                      .++.+..+. |...|+.....+.+.              +.++++++.+.+.....  |+ ...|+-+-..+....    
T Consensus       169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~  245 (331)
T 3dss_A          169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCE  245 (331)
T ss_dssp             HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGG
T ss_pred             HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccc
Confidence            555444221 333444433333332              33566666666666522  33 333333322222221    


Q ss_pred             ------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHhCCCHHHHHHHHHHHHHcCC
Q 043068          416 ------GRMQDVEDLVDRMIRSGHNLDFTMYSCLLK---GYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       416 ------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~---~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                            +.++++++.++++++..+. +.-.+..++.   +....|..+++...+.++++.+|
T Consensus       246 ~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp  306 (331)
T 3dss_A          246 LSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP  306 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred             cchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence                  3578888999999885443 3333322222   22246778899999999998886

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.55  E-value=1e-06  Score=72.20  Aligned_cols=92  Identities=11%  Similarity=0.103  Sum_probs=46.9

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068          126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC  205 (526)
Q Consensus       126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~  205 (526)
                      +..+...+.+.|++++|+..|+++...++ .+...|..+..++...|++++|++.|++.++..  |.+...|..+..+|.
T Consensus        39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHH
Confidence            33444455555555555555555554442 334455555555555555555555555555544  444445555555555


Q ss_pred             HcCChhhHHHHHHhC
Q 043068          206 KMGMIENAKKVFDVM  220 (526)
Q Consensus       206 ~~g~~~~A~~~~~~~  220 (526)
                      +.|++++|.+.|++.
T Consensus       116 ~lg~~~eA~~~~~~a  130 (151)
T 3gyz_A          116 RLKAPLKAKECFELV  130 (151)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHH
Confidence            555555555555443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.55  E-value=2e-06  Score=68.15  Aligned_cols=89  Identities=11%  Similarity=0.073  Sum_probs=36.6

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 043068          128 KLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKM  207 (526)
Q Consensus       128 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  207 (526)
                      .+...+...|++++|+..|++.....+ .+...+..+...+...|++++|.+.+++..+..  |.+...+..+..++.+.
T Consensus        17 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   93 (131)
T 2vyi_A           17 TEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLALSSL   93 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHHHHHh
Confidence            333444444444444444444433321 223334444444444444444444444444432  33333444444444444


Q ss_pred             CChhhHHHHHHh
Q 043068          208 GMIENAKKVFDV  219 (526)
Q Consensus       208 g~~~~A~~~~~~  219 (526)
                      |++++|.+.|++
T Consensus        94 ~~~~~A~~~~~~  105 (131)
T 2vyi_A           94 NKHVEAVAYYKK  105 (131)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            444444444433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.55  E-value=3.3e-07  Score=75.16  Aligned_cols=115  Identities=5%  Similarity=-0.073  Sum_probs=87.3

Q ss_pred             HHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043068          353 LLKEMRARGLKP-TVFSFNAVFRILVENGELDRAILLLKQMPQMDCLP-NFVSYNTIICGLCMAKGRMQDVEDLVDRMIR  430 (526)
Q Consensus       353 ~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~  430 (526)
                      .|+++...  .| +...+..+...+.+.|++++|+..|++.....  | +...|..+-..+.. .|++++|...++++++
T Consensus         9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A            9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQA-MGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh
Confidence            34444433  33 34566777888889999999999999888743  4 45555555555544 5999999999999998


Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccch
Q 043068          431 SGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKL  473 (526)
Q Consensus       431 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  473 (526)
                      ..+. ++..+..+..+|...|++++|...|++.++..+..|..
T Consensus        84 l~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           84 MDIX-EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             HSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred             cCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence            7654 67888999999999999999999999999988866654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.53  E-value=1.5e-06  Score=82.04  Aligned_cols=127  Identities=13%  Similarity=0.066  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC--------------hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGAC--------------LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVV  190 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  190 (526)
                      .+..+...|.+.|++++|+..|++.....+...              ..+|..+..++.+.|++++|+..|++.++..  
T Consensus       149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--  226 (336)
T 1p5q_A          149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--  226 (336)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence            556667777777777777777777776653221              3566666666666666666666666666654  


Q ss_pred             CCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 043068          191 PPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMINGFCKKGELEEA-KKCMNEMM  253 (526)
Q Consensus       191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m~  253 (526)
                      |.+..+|..+..+|...|++++|...|++. .+ +.+...+..+..++.+.|+.++| ..+|+.|.
T Consensus       227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666666666666666666666654 22 22344555555666666666555 33444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.52  E-value=2.1e-06  Score=68.36  Aligned_cols=114  Identities=9%  Similarity=-0.005  Sum_probs=66.8

Q ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 043068           92 TPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVL  168 (526)
Q Consensus        92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~  168 (526)
                      ...+..++..+.+.|++++|...+++..   +.+...+..+...|...|++++|++.|+++....+ .+...+..+..++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~   94 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHH
Confidence            3455556666666666666666665432   22334555666666666666666666666665543 3455666666666


Q ss_pred             HhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068          169 VRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG  208 (526)
Q Consensus       169 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  208 (526)
                      .+.|++++|.+.|++..+..  |.+...+..+..++.+.|
T Consensus        95 ~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHT
T ss_pred             HHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhc
Confidence            66666666666666666554  444555555555555444

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.51  E-value=4.7e-05  Score=70.56  Aligned_cols=29  Identities=10%  Similarity=0.033  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043068          312 FDQAVGYLRNVMEANMNPDVKSYEVVINGF  341 (526)
Q Consensus       312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~  341 (526)
                      ++++++.+.+.+...+. |..+|+-+-..+
T Consensus       209 ~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll  237 (331)
T 3dss_A          209 LLKELELVQNAFFTDPN-DQSAWFYHRWLL  237 (331)
T ss_dssp             HHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            55566666666655443 555555443333

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.50  E-value=1.6e-06  Score=70.99  Aligned_cols=92  Identities=10%  Similarity=-0.038  Sum_probs=53.5

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068          126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC  205 (526)
Q Consensus       126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~  205 (526)
                      +..+...+...|++++|+..|+++...++ .+...|..+..++...|++++|++.|++.++..  |.+...+..+..+|.
T Consensus        24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~  100 (148)
T 2vgx_A           24 LYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAAECLL  100 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHH
Confidence            34455555566666666666666555443 345555555666666666666666666665554  445555666666666


Q ss_pred             HcCChhhHHHHHHhC
Q 043068          206 KMGMIENAKKVFDVM  220 (526)
Q Consensus       206 ~~g~~~~A~~~~~~~  220 (526)
                      ..|++++|.+.|++.
T Consensus       101 ~~g~~~~A~~~~~~a  115 (148)
T 2vgx_A          101 QXGELAEAESGLFLA  115 (148)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHH
Confidence            666666666665554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.47  E-value=6.4e-06  Score=65.08  Aligned_cols=96  Identities=16%  Similarity=0.065  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC  307 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  307 (526)
                      .|..+...+.+.|++++|+..|++.++.... +...|..+..++.+.|++++|+..+++..+.. +.+...+..+..++.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            4445555555556666666666555554222 44555555555555555555555555555443 334455555555555


Q ss_pred             HcCCHHHHHHHHHHHHHc
Q 043068          308 VVGKFDQAVGYLRNVMEA  325 (526)
Q Consensus       308 ~~g~~~~A~~~~~~~~~~  325 (526)
                      ..|++++|...|++..+.
T Consensus        84 ~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           84 AVKEYASALETLDAARTK  101 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHh
Confidence            555555555555555543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.45  E-value=1.4e-05  Score=61.79  Aligned_cols=96  Identities=15%  Similarity=0.098  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC  307 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  307 (526)
                      .+..+...+...|++++|.+.|++...... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            344444555555555555555555544321 134444444445555555555555555544432 233444444444455


Q ss_pred             HcCCHHHHHHHHHHHHHc
Q 043068          308 VVGKFDQAVGYLRNVMEA  325 (526)
Q Consensus       308 ~~g~~~~A~~~~~~~~~~  325 (526)
                      ..|++++|...+++..+.
T Consensus        84 ~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTT
T ss_pred             HHhhHHHHHHHHHHHHHc
Confidence            555555555555444443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.44  E-value=1.8e-05  Score=77.57  Aligned_cols=95  Identities=12%  Similarity=-0.014  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC---CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCC-C--H
Q 043068          263 TYNAMIYGLCINGRVDEAKMLMAKMRLN--GF---KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA---NMNP-D--V  331 (526)
Q Consensus       263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~-~--~  331 (526)
                      ++..+...|...|++++|..+++++...  +.   +....++..++..|...|++++|..++++....   ...| .  .
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  216 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA  216 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence            3444555555555555555555544322  10   111234445555555555555555555544331   0111 0  1


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068          332 KSYEVVINGFCKIGKSDEAISLLKEM  357 (526)
Q Consensus       332 ~~~~~li~~~~~~g~~~~A~~~~~~m  357 (526)
                      ..+..+...+...|++++|...|.+.
T Consensus       217 ~~~~~~g~~~~~~~~y~~A~~~~~~a  242 (434)
T 4b4t_Q          217 ELDLMSGILHCEDKDYKTAFSYFFES  242 (434)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            23344444445555555555555444

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.43  E-value=1e-05  Score=63.88  Aligned_cols=97  Identities=12%  Similarity=0.070  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043068          262 LTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGF  341 (526)
Q Consensus       262 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~  341 (526)
                      ..+..+...+.+.|++++|+..|++..+.. +.+...+..+..+|.+.|++++|+..+++..+.++. +...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            345555666667777777777777666554 445666666667777777777777777766665433 456666666666


Q ss_pred             HhcCChhHHHHHHHHHHHC
Q 043068          342 CKIGKSDEAISLLKEMRAR  360 (526)
Q Consensus       342 ~~~g~~~~A~~~~~~m~~~  360 (526)
                      ...|++++|+..|++..+.
T Consensus        83 ~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           83 IAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHh
Confidence            6677777777666666554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.42  E-value=3e-06  Score=67.29  Aligned_cols=94  Identities=13%  Similarity=0.196  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC----C----HHHHH
Q 043068          160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP----N----LLAYN  230 (526)
Q Consensus       160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~----~~~~~  230 (526)
                      ++..+...+.+.|++++|++.|++.++..  |.+..+|..+..+|.+.|++++|++.+++. .+.|    +    ..+|.
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            34445555555556666666665555554  445555555555555555555555555543 1111    1    12455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc
Q 043068          231 TMINGFCKKGELEEAKKCMNEMMNR  255 (526)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~  255 (526)
                      .+..++...|++++|++.|++.+..
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5556666666666666666666554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.41  E-value=2.6e-06  Score=69.12  Aligned_cols=104  Identities=8%  Similarity=-0.097  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043068          366 VFSFNAVFRILVENGELDRAILLLKQMPQMDCLP-NFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLL  444 (526)
Q Consensus       366 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~  444 (526)
                      ...+..+...+.+.|++++|+..|++.....  | +...|..+...+.. .|++++|...+++.++.++. ++..+..+.
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~-~~~~~~~lg   93 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQS-LGLYEQALQSYSYGALMDIN-EPRFPFHAA   93 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTT-CTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCC-CcHHHHHHH
Confidence            3455667778889999999999999888743  4 44555555555555 49999999999999987654 778888999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCccch
Q 043068          445 KGYCEEGNVENVMQIAHEMVTKKGRLLKL  473 (526)
Q Consensus       445 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  473 (526)
                      .+|...|++++|.+.|++.++..+..|..
T Consensus        94 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~  122 (142)
T 2xcb_A           94 ECHLQLGDLDGAESGFYSARALAAAQPAH  122 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence            99999999999999999999988766543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.40  E-value=8.1e-06  Score=64.70  Aligned_cols=58  Identities=16%  Similarity=0.097  Sum_probs=24.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043068          229 YNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKM  287 (526)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~  287 (526)
                      +..+...+.+.|++++|++.|++.++.... +...|..+..+|.+.|++++|+..+++.
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            334444444444444444444444443211 2333444444444444444444444443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.40  E-value=7.8e-06  Score=68.09  Aligned_cols=93  Identities=15%  Similarity=0.025  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY  204 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~  204 (526)
                      .+..+...|...|++++|++.|++.....+ .+...|..+..++.+.|++++|+..|++.++..  |.+...|..+..+|
T Consensus        13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           13 KLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence            455666667777777777777777766653 356667777777777777777777777777765  56677777777777


Q ss_pred             HHcCChhhHHHHHHhC
Q 043068          205 CKMGMIENAKKVFDVM  220 (526)
Q Consensus       205 ~~~g~~~~A~~~~~~~  220 (526)
                      .+.|++++|.+.|++.
T Consensus        90 ~~~g~~~~A~~~~~~a  105 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKG  105 (164)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHH
Confidence            7777777777777665

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.39  E-value=5.6e-06  Score=67.11  Aligned_cols=91  Identities=10%  Similarity=-0.069  Sum_probs=50.4

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 043068          127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK  206 (526)
Q Consensus       127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~  206 (526)
                      ..+...+...|++++|+..|+++...++ .+...|..+..++.+.|++++|+..|++.++..  |.+...+..+..++..
T Consensus        22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           22 YALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHH
Confidence            3444455555666666666665555443 344555555555555666666666666555554  4455555555555555


Q ss_pred             cCChhhHHHHHHhC
Q 043068          207 MGMIENAKKVFDVM  220 (526)
Q Consensus       207 ~g~~~~A~~~~~~~  220 (526)
                      .|++++|.+.|++.
T Consensus        99 ~g~~~~A~~~~~~a  112 (142)
T 2xcb_A           99 LGDLDGAESGFYSA  112 (142)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH
Confidence            55555555555543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.37  E-value=1.6e-05  Score=61.39  Aligned_cols=92  Identities=14%  Similarity=0.103  Sum_probs=45.0

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068          126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC  205 (526)
Q Consensus       126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~  205 (526)
                      +..+...+...|++++|+..|++.....+ .+...+..+...+...|++++|...+++..+..  |.+...+..+..++.
T Consensus         7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            7 LKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHHHH
Confidence            33444444555555555555555544332 234444445555555555555555555555443  334444444555555


Q ss_pred             HcCChhhHHHHHHhC
Q 043068          206 KMGMIENAKKVFDVM  220 (526)
Q Consensus       206 ~~g~~~~A~~~~~~~  220 (526)
                      ..|++++|.+.+++.
T Consensus        84 ~~~~~~~A~~~~~~~   98 (118)
T 1elw_A           84 FLNRFEEAKRTYEEG   98 (118)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHH
Confidence            555555555544443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.35  E-value=6.4e-06  Score=71.07  Aligned_cols=125  Identities=14%  Similarity=0.094  Sum_probs=66.1

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC---------------hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 043068          126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGAC---------------LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVV  190 (526)
Q Consensus       126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  190 (526)
                      +..+...+...|++++|+..|++.....+...               ...|..+..++.+.|++++|+..+++.++..  
T Consensus        41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--  118 (198)
T 2fbn_A           41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--  118 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--
Confidence            44555666667777777777776665432111               1455556666666666666666666666554  


Q ss_pred             CCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHH-HHHHHH
Q 043068          191 PPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVK-PNLLAYNTMINGFCKKGELEEAK-KCMNEM  252 (526)
Q Consensus       191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~li~~~~~~g~~~~A~-~~~~~m  252 (526)
                      |.+..++..+..+|...|++++|.+.|++. ... .+...+..+..++...++.+++. ..|..|
T Consensus       119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred             cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666666666666666666554 222 23444555555555544444444 333333

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.34  E-value=2.6e-05  Score=63.21  Aligned_cols=98  Identities=15%  Similarity=0.066  Sum_probs=55.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 043068          225 NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN----ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHK  300 (526)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  300 (526)
                      +...+..+...+...|++++|++.|++..+.  .|+    ...+..+...|...|++++|+..+++..+.. +.+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence            4445555566666666666666666666554  333    3445555555566666666666666555443 33445555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068          301 SMLKGLCVVGKFDQAVGYLRNVMEA  325 (526)
Q Consensus       301 ~li~~~~~~g~~~~A~~~~~~~~~~  325 (526)
                      .+..++...|++++|...|++..+.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            5555556666666666666555554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.33  E-value=4.5e-06  Score=65.53  Aligned_cols=86  Identities=14%  Similarity=0.006  Sum_probs=40.4

Q ss_pred             HHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh
Q 043068          131 KAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMI  210 (526)
Q Consensus       131 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  210 (526)
                      ..+.+.|++++|+..|+++.+..+ .+...|..+..++...|++++|+..|++.++..  |.+...+..+..++.+.|++
T Consensus        25 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~~g~~  101 (121)
T 1hxi_A           25 LSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHNA  101 (121)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCH
Confidence            334444445555555544444432 234444444444444555555555555444443  34444444444444444444


Q ss_pred             hhHHHHHHh
Q 043068          211 ENAKKVFDV  219 (526)
Q Consensus       211 ~~A~~~~~~  219 (526)
                      ++|.+.+++
T Consensus       102 ~~A~~~~~~  110 (121)
T 1hxi_A          102 NAALASLRA  110 (121)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444444

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.33  E-value=1.6e-05  Score=66.08  Aligned_cols=98  Identities=9%  Similarity=-0.006  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043068          226 LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKG  305 (526)
Q Consensus       226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  305 (526)
                      ...+..+...+.+.|++++|++.|++.++.... +...|..+..+|.+.|++++|+..|++..+.. +.+...+..+..+
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   88 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            334555555555555566665555555554222 44555555555555555555555555555443 3344555555555


Q ss_pred             HHHcCCHHHHHHHHHHHHHc
Q 043068          306 LCVVGKFDQAVGYLRNVMEA  325 (526)
Q Consensus       306 ~~~~g~~~~A~~~~~~~~~~  325 (526)
                      |...|++++|...|++.++.
T Consensus        89 ~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHh
Confidence            55555555555555555544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.33  E-value=3.1e-06  Score=67.02  Aligned_cols=93  Identities=14%  Similarity=0.224  Sum_probs=42.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC----CCC----HHHHHH
Q 043068          161 YNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV----KPN----LLAYNT  231 (526)
Q Consensus       161 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~  231 (526)
                      +..+...+...|++++|...|++..+..  |.+...+..+...+...|++++|...+++. ..    .++    ...+..
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            3334444444444444444444444433  334444444444444444444444444443 10    111    334445


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc
Q 043068          232 MINGFCKKGELEEAKKCMNEMMNR  255 (526)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~  255 (526)
                      +..++...|++++|.+.|++..+.
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh
Confidence            555555555555555555555544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.32  E-value=1.4e-05  Score=64.92  Aligned_cols=106  Identities=10%  Similarity=0.014  Sum_probs=72.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043068          365 TVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN----FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMY  440 (526)
Q Consensus       365 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  440 (526)
                      +...+..+...+...|++++|.+.|++..+.  .|+    ...+..+...+... |++++|...+++.++.... +...+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~  102 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKL-EDYDKAETEASKAIEKDGG-DVKAL  102 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhCcc-CHHHH
Confidence            3455666666677777777777777776663  354    34455555554443 7888888888877775433 56777


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchh
Q 043068          441 SCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLK  474 (526)
Q Consensus       441 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  474 (526)
                      ..+..+|...|++++|.+.+++.++..+..+...
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  136 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ  136 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence            7788888888888888888888888777555433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.32  E-value=8.4e-06  Score=62.41  Aligned_cols=96  Identities=14%  Similarity=-0.063  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHhHHHHHHH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKD--NVSTHKSMLKG  305 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~  305 (526)
                      .+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.  +...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA   85 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence            4444555555555555555555555544221 34445555555555555555555555555432 22  34445555555


Q ss_pred             HHHc-CCHHHHHHHHHHHHHc
Q 043068          306 LCVV-GKFDQAVGYLRNVMEA  325 (526)
Q Consensus       306 ~~~~-g~~~~A~~~~~~~~~~  325 (526)
                      +.+. |++++|.+.++++...
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHhCCHHHHHHHHHHHhhc
Confidence            5555 5555555555555444

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.31  E-value=8.8e-06  Score=64.30  Aligned_cols=59  Identities=15%  Similarity=0.072  Sum_probs=26.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068          229 YNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMR  288 (526)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~  288 (526)
                      |..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~   65 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI   65 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3444444444444444444444444432 1133344444444444444444444444443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.31  E-value=1.4e-05  Score=64.08  Aligned_cols=92  Identities=8%  Similarity=-0.076  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY  204 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~  204 (526)
                      .+..+...+...|++++|+..|++.....+ .+...|..+..++...|++++|...|++.++..  |.+...+..+..++
T Consensus        11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~   87 (137)
T 3q49_B           11 ELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQCQ   87 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHHHHHH
Confidence            344444444444445555544444444332 233444444444444444444444444444443  33444444444444


Q ss_pred             HHcCChhhHHHHHHh
Q 043068          205 CKMGMIENAKKVFDV  219 (526)
Q Consensus       205 ~~~g~~~~A~~~~~~  219 (526)
                      ...|++++|...|++
T Consensus        88 ~~~~~~~~A~~~~~~  102 (137)
T 3q49_B           88 LEMESYDEAIANLQR  102 (137)
T ss_dssp             HHTTCHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHH
Confidence            444444444444443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.30  E-value=8e-06  Score=62.51  Aligned_cols=94  Identities=11%  Similarity=0.100  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC---CHHHHHHHHHH
Q 043068          160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP---NLLAYNTMING  235 (526)
Q Consensus       160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~li~~  235 (526)
                      .+..+...+...|++++|...|++..+..  +.+..++..+...+...|++++|.+.|++. ...|   +...+..+..+
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            33344444444444444444444444443  334444444444444444444444444443 1111   23444444444


Q ss_pred             HHhc-CCHHHHHHHHHHHHHc
Q 043068          236 FCKK-GELEEAKKCMNEMMNR  255 (526)
Q Consensus       236 ~~~~-g~~~~A~~~~~~m~~~  255 (526)
                      +.+. |++++|.+.+++....
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHhCCHHHHHHHHHHHhhc
Confidence            4444 4444444444444443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.30  E-value=2.8e-05  Score=76.12  Aligned_cols=194  Identities=9%  Similarity=-0.045  Sum_probs=119.2

Q ss_pred             HHHHcCCCHHHHHHHHHHHHhcCCCCC----------------hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCH
Q 043068          131 KAYGDRGNVKAAIFWFHQAKQIENGAC----------------LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDV  194 (526)
Q Consensus       131 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  194 (526)
                      ..+.+.|++++|++.|.++........                ..++..+...|...|++++|.+.+.++.+...-.++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            334556677777777766655432211                1135667777777777777777777765421111121


Q ss_pred             ----HHHHHHHHHHHHcCChhhHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC--C
Q 043068          195 ----STYTTMIRGYCKMGMIENAKKVFDVM-------TVKPN-LLAYNTMINGFCKKGELEEAKKCMNEMMNR--GC--R  258 (526)
Q Consensus       195 ----~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~  258 (526)
                          .+.+.+...+...|+.+.|.++++..       +..+. ..++..+...|...|++++|..++++....  +.  .
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence                12333333444467777777776654       22222 446777888888888888888888877553  11  1


Q ss_pred             C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC--HHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068          259 P-NELTYNAMIYGLCINGRVDEAKMLMAKMRLN----GFKDN--VSTHKSMLKGLCVVGKFDQAVGYLRNVME  324 (526)
Q Consensus       259 p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~  324 (526)
                      + ...++..++..|...|++++|..++++....    +.++.  ...+..+...+...|++++|...|.+..+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            1 1346777888888889998888888877532    21111  23556666777778888888888777654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.29  E-value=2.6e-05  Score=62.35  Aligned_cols=93  Identities=15%  Similarity=0.031  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043068          263 TYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC  342 (526)
Q Consensus       263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~  342 (526)
                      .+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.++. +...+..+...|.
T Consensus        11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~   88 (137)
T 3q49_B           11 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence            33333334444444444444444433332 223333334444444444444444444444333222 3333444444444


Q ss_pred             hcCChhHHHHHHHHH
Q 043068          343 KIGKSDEAISLLKEM  357 (526)
Q Consensus       343 ~~g~~~~A~~~~~~m  357 (526)
                      ..|++++|+..|++.
T Consensus        89 ~~~~~~~A~~~~~~a  103 (137)
T 3q49_B           89 EMESYDEAIANLQRA  103 (137)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHH
Confidence            444444444444433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.29  E-value=3.2e-06  Score=66.45  Aligned_cols=98  Identities=9%  Similarity=-0.006  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043068          369 FNAVFRILVENGELDRAILLLKQMPQMDCLPN-FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGY  447 (526)
Q Consensus       369 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  447 (526)
                      +..+...+.+.|++++|+..|++..+.  .|+ ...|..+-..+.. .|++++|+..+++.++..+. +...+..+..+|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~   95 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPK-DIAVHAALAVSH   95 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            455667788889999999999988874  354 4455555545444 49999999999999887654 778888899999


Q ss_pred             HhCCCHHHHHHHHHHHHHcCCCc
Q 043068          448 CEEGNVENVMQIAHEMVTKKGRL  470 (526)
Q Consensus       448 ~~~g~~~~a~~~~~~m~~~~~~~  470 (526)
                      .+.|++++|+..+++.++.++..
T Consensus        96 ~~~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           96 TNEHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCC
Confidence            99999999999999998887744

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.24  E-value=7.4e-06  Score=67.49  Aligned_cols=95  Identities=15%  Similarity=0.101  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC----HH
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENG-AC----LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD----VS  195 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~  195 (526)
                      ++..+...|...|++++|+..+++....... .+    ..++..+...+...|++++|.+.+++..+...-..+    ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            3455666666667777777766665543211 11    135555666666666666666666665432100011    23


Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHh
Q 043068          196 TYTTMIRGYCKMGMIENAKKVFDV  219 (526)
Q Consensus       196 ~~~~li~~~~~~g~~~~A~~~~~~  219 (526)
                      ++..+...+...|++++|.+.+++
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~  114 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLK  114 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHH
Confidence            344444444445555544444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.17  E-value=3e-05  Score=61.23  Aligned_cols=98  Identities=15%  Similarity=0.014  Sum_probs=69.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHcccCCCCcCH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHH
Q 043068          371 AVFRILVENGELDRAILLLKQMPQMDCLPNF----VSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLD---FTMYSCL  443 (526)
Q Consensus       371 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l  443 (526)
                      .+...+.+.|++++|.+.|+++.+..  |+.    ..+..+...+... |++++|...++++++..+. +   ...+..+
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l   82 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYAT-RNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL   82 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence            44556677788888888888777632  332    2444444455554 8888888888888876443 3   5677888


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHcCCCccc
Q 043068          444 LKGYCEEGNVENVMQIAHEMVTKKGRLLK  472 (526)
Q Consensus       444 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~  472 (526)
                      ..+|.+.|++++|...|+++++..+..+.
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~  111 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDA  111 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence            88888899999999999998888875543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.16  E-value=3.8e-06  Score=65.50  Aligned_cols=83  Identities=14%  Similarity=0.109  Sum_probs=53.3

Q ss_pred             CCCHHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhH
Q 043068          136 RGNVKAAIFWFHQAKQIE--NGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENA  213 (526)
Q Consensus       136 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  213 (526)
                      .|++++|+..|++....+  .+.+...+..+..++...|++++|++.|++.++..  |.+..++..+..++.+.|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHH
Confidence            466777777777776653  11235566667777777777777777777777665  56666777777777777777777


Q ss_pred             HHHHHhC
Q 043068          214 KKVFDVM  220 (526)
Q Consensus       214 ~~~~~~~  220 (526)
                      .+.|++.
T Consensus        81 ~~~~~~a   87 (117)
T 3k9i_A           81 VELLLKI   87 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776665

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.15  E-value=2.3e-05  Score=64.49  Aligned_cols=96  Identities=13%  Similarity=0.177  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCC-CHH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCR-PN----ELTYNAMIYGLCINGRVDEAKMLMAKMRLNG----FKD-NVS  297 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~  297 (526)
                      ++..+...+...|++++|+..+++..+.... ++    ..++..+...+...|++++|...+++..+..    .++ ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            4455555555666666666666555432100 01    1244455555555566666655555543210    000 022


Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068          298 THKSMLKGLCVVGKFDQAVGYLRNVM  323 (526)
Q Consensus       298 ~~~~li~~~~~~g~~~~A~~~~~~~~  323 (526)
                      ++..+...+...|++++|...+++..
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~  116 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHL  116 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            33444444455555555555544443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.14  E-value=0.00011  Score=57.80  Aligned_cols=92  Identities=10%  Similarity=-0.030  Sum_probs=46.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHH
Q 043068          232 MINGFCKKGELEEAKKCMNEMMNRGCRPNE---LTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN---VSTHKSMLKG  305 (526)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~  305 (526)
                      +...+...|++++|...|++..+.... +.   ..+..+..++.+.|++++|...|+++.+.. +.+   ...+..+..+
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence            344455555555555555555554221 11   344445555555555555555555555432 222   3344445555


Q ss_pred             HHHcCCHHHHHHHHHHHHHc
Q 043068          306 LCVVGKFDQAVGYLRNVMEA  325 (526)
Q Consensus       306 ~~~~g~~~~A~~~~~~~~~~  325 (526)
                      +.+.|++++|...|+++.+.
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            55555555555555555544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.13  E-value=3.9e-06  Score=65.42  Aligned_cols=97  Identities=8%  Similarity=0.055  Sum_probs=67.4

Q ss_pred             HcCCHHHHHHHHHHcccCCC-CcC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 043068          378 ENGELDRAILLLKQMPQMDC-LPN-FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVEN  455 (526)
Q Consensus       378 ~~g~~~~a~~~~~~~~~~~~-~p~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  455 (526)
                      ..|++++|+..|++..+.+. .|+ ...+..+...+.. .|++++|...++++++..+. +..++..+..++.+.|++++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~   79 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT-LGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQ   79 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHH
Confidence            35777888888888777421 133 3445555555544 48899999999888887655 67888888888999999999


Q ss_pred             HHHHHHHHHHcCCCccchhhh
Q 043068          456 VMQIAHEMVTKKGRLLKLKNF  476 (526)
Q Consensus       456 a~~~~~~m~~~~~~~~~~~~~  476 (526)
                      |+..+++.++..+..+....+
T Consensus        80 A~~~~~~al~~~p~~~~~~~~  100 (117)
T 3k9i_A           80 GVELLLKIIAETSDDETIQSY  100 (117)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHT
T ss_pred             HHHHHHHHHHhCCCcHHHHHH
Confidence            999999988888766655443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.13  E-value=2.4e-05  Score=77.23  Aligned_cols=120  Identities=16%  Similarity=0.094  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC--------------hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGAC--------------LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVV  190 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  190 (526)
                      .+..+...|.+.|++++|+..|+++....+...              ...|..+..+|.+.|++++|+..|++.++..  
T Consensus       270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--  347 (457)
T 1kt0_A          270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--  347 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--
Confidence            556677778888888888888888776553221              4566666677777777777777777777665  


Q ss_pred             CCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 043068          191 PPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAK  246 (526)
Q Consensus       191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~  246 (526)
                      |.+...|..+..+|...|++++|...|++. .+.| +...+..+..++.+.++.+++.
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            556666777777777777777777776665 3333 3345555666666666665554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.12  E-value=4.6e-05  Score=75.16  Aligned_cols=138  Identities=7%  Similarity=-0.059  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043068          226 LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKG  305 (526)
Q Consensus       226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  305 (526)
                      ...|..+...+.+.|++++|+..|++.++.......  +           .-+...    +..    +.....|..+..+
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~----~~~----~~~~~~~~nla~~  326 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESK----ASE----SFLLAAFLNLAMC  326 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHH----HHH----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHH----HHH----HHHHHHHHHHHHH
Confidence            446677777778888888888888877764221110  0           000000    000    0012344445555


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043068          306 LCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRA  385 (526)
Q Consensus       306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  385 (526)
                      |.+.|++++|+..++++++.... +...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.|+.+++
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a  404 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER  404 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555554332 44555555555555555555555555555431 11233445555555555555544


Q ss_pred             H
Q 043068          386 I  386 (526)
Q Consensus       386 ~  386 (526)
                      .
T Consensus       405 ~  405 (457)
T 1kt0_A          405 D  405 (457)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.07  E-value=1.4e-05  Score=79.16  Aligned_cols=121  Identities=15%  Similarity=0.054  Sum_probs=90.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068          232 MINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGK  311 (526)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  311 (526)
                      +...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..++++.+.. +.+...+..+..+|...|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            344566788899999999888877332 57788888888899999999999999888765 5667788888889999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 043068          312 FDQAVGYLRNVMEANMNPDVKSYEVVING--FCKIGKSDEAISLLK  355 (526)
Q Consensus       312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~  355 (526)
                      +++|.+.+++..+..+. +...+..+..+  +.+.|++++|++.++
T Consensus        90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999988886543 33445555544  778888999998888

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.06  E-value=5.2e-05  Score=62.81  Aligned_cols=68  Identities=6%  Similarity=0.037  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068          402 VSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLL  471 (526)
Q Consensus       402 ~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~  471 (526)
                      ..|..+...+... |++++|...+++.++..+. +...|..+..+|...|++++|...|++.++.++..+
T Consensus        64 ~~~~nla~~~~~~-~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           64 PLYANMSQCYLNI-GDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHhc-CcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            3455555555554 9999999999999887544 788899999999999999999999999999988655

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.06  E-value=9.6e-05  Score=61.16  Aligned_cols=63  Identities=17%  Similarity=0.055  Sum_probs=35.7

Q ss_pred             HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068          297 STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR  360 (526)
Q Consensus       297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  360 (526)
                      ..|..+..+|.+.|++++|+..+++.++.++. +...|..+..+|...|++++|+..|++..+.
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            44555555555666666666666555555432 4555555555666666666666666555544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.06  E-value=5.6e-05  Score=72.13  Aligned_cols=137  Identities=12%  Similarity=0.046  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043068          228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC  307 (526)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  307 (526)
                      .+..+...+.+.|++++|++.|++.++.-  +..          ......+++.       +.. +.+..+|..+..+|.
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~-------~~~-~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGA-------KLQ-PVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHG-------GGH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHH-------HHH-HHHHHHHHHHHHHHH
Confidence            46667777777888888888777776520  000          0000000000       000 122334444555555


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043068          308 VVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAI  386 (526)
Q Consensus       308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  386 (526)
                      +.|++++|+..+++.++.... +...|..+..+|...|++++|++.|++..+.. +-+...+..+..++...++.+++.
T Consensus       285 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555544322 44455555555555555555555555554431 113334444444444444444443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.04  E-value=1.7e-05  Score=78.56  Aligned_cols=117  Identities=15%  Similarity=0.143  Sum_probs=73.2

Q ss_pred             HHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh
Q 043068          131 KAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMI  210 (526)
Q Consensus       131 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  210 (526)
                      ..+.+.|++++|++.|+++.+..+ .+..+|..+..++.+.|++++|++.+++.++..  |.+..++..+..+|.+.|++
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~   90 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKF   90 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCH
Confidence            344566777777777777766553 346677777777777777777777777777765  56677777777777777777


Q ss_pred             hhHHHHHHhC-CCCC-CHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 043068          211 ENAKKVFDVM-TVKP-NLLAYNTMING--FCKKGELEEAKKCMN  250 (526)
Q Consensus       211 ~~A~~~~~~~-~~~p-~~~~~~~li~~--~~~~g~~~~A~~~~~  250 (526)
                      ++|.+.|++. ...| +...+..+..+  +.+.|++++|++.++
T Consensus        91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            7777777765 2122 22334444433  666677777777766

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.00  E-value=7.8e-05  Score=60.54  Aligned_cols=71  Identities=8%  Similarity=-0.033  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHC-----CCCC-CHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHcCCCccc
Q 043068          403 SYNTIICGLCMAKGRMQDVEDLVDRMIRS-----GHNL-DFTMY----SCLLKGYCEEGNVENVMQIAHEMVTKKGRLLK  472 (526)
Q Consensus       403 ~~~~ll~~~~~~~g~~~~a~~~~~~~~~~-----~~~p-~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~  472 (526)
                      .|..+-.++... |++++|+..+++.++.     .+.| +...|    .....++...|++++|+..|++.++..+....
T Consensus        59 a~~n~g~al~~L-gr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           59 CHAGLAEALAGL-RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHC-CCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence            565565565554 8888888888888775     1134 45678    89999999999999999999999988775544


Q ss_pred             hh
Q 043068          473 LK  474 (526)
Q Consensus       473 ~~  474 (526)
                      +.
T Consensus       138 ~~  139 (159)
T 2hr2_A          138 ET  139 (159)
T ss_dssp             CC
T ss_pred             HH
Confidence            33

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.99  E-value=0.0003  Score=71.10  Aligned_cols=164  Identities=8%  Similarity=0.040  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-
Q 043068          312 FDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGK----------SDEAISLLKEMRARGLKPTVFSFNAVFRILVENG-  380 (526)
Q Consensus       312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-  380 (526)
                      .++|++.++++.+.++. +..+|+.--..+...|+          ++++++.++++.+...+ +..+|+.-...+.+.| 
T Consensus        45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence            34566666666666544 55556655555555555          66777777777665322 4556666666666666 


Q ss_pred             -CHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC--------
Q 043068          381 -ELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKG-RMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEE--------  450 (526)
Q Consensus       381 -~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------  450 (526)
                       +++++++.++++.+.. .-+...|+.--..+... | ..+++.+.++++++..+. +...|+.....+.+.        
T Consensus       123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l-~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-CCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence             5577777777776643 22444454443333333 5 667777777777766555 667777766666552        


Q ss_pred             ------CCHHHHHHHHHHHHHcCCCccchhhhHHHH
Q 043068          451 ------GNVENVMQIAHEMVTKKGRLLKLKNFLTRV  480 (526)
Q Consensus       451 ------g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~  480 (526)
                            +.++++++.+++.++.+|......+|+..+
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~l  235 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL  235 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence                  557888889989988888877766665433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.99  E-value=6.4e-05  Score=71.76  Aligned_cols=119  Identities=9%  Similarity=0.109  Sum_probs=76.6

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHh----------------cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 043068          126 ISKLIKAYGDRGNVKAAIFWFHQAKQ----------------IENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENV  189 (526)
Q Consensus       126 ~~~li~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  189 (526)
                      +..+...+.+.|++++|++.|+++.+                ... .+..+|..+..++.+.|++++|++.+++.++.. 
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-  303 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP-VALSCVLNIGACKLKMSDWQGAVDSCLEALEID-  303 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence            34455566666666666666666554                111 234567777777777777777777777777665 


Q ss_pred             CCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 043068          190 VPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKK  247 (526)
Q Consensus       190 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~  247 (526)
                       |.+...|..+..+|.+.|++++|.+.|++. ...| +...+..+...+...++.+++.+
T Consensus       304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             566777777777777777777777777765 2233 45556666666666666665543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.98  E-value=0.00026  Score=71.47  Aligned_cols=121  Identities=8%  Similarity=-0.037  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 043068          226 LLAYNTMINGFCKKG--ELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCING-RVDEAKMLMAKMRLNGFKDNVSTHKSM  302 (526)
Q Consensus       226 ~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l  302 (526)
                      ..+|+.-.-++.+.|  +++++++.++++.+.... +..+|+.-...+.+.| .++++++.++++.+.. +.+...|+-.
T Consensus       107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r  184 (567)
T 1dce_A          107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYR  184 (567)
T ss_dssp             HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHH
Confidence            334444444444444  345555555555554333 4444444444444444 4555555555554433 3344444444


Q ss_pred             HHHHHHc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 043068          303 LKGLCVV--------------GKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDE  349 (526)
Q Consensus       303 i~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  349 (526)
                      ...+.+.              +.++++++.+++.+...+. |...|+.+-..+.+.+..++
T Consensus       185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred             HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence            4433332              3467777777777776544 66677777666666665433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.98  E-value=3.1e-05  Score=73.08  Aligned_cols=127  Identities=9%  Similarity=0.030  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCh------------------hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACL------------------YSYNSLLGVLVRVNSIKLAEEFFHQIVK  186 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------------~~~~~li~~~~~~g~~~~A~~~~~~~~~  186 (526)
                      .+..+...+.+.|++++|+..|++.....  |+.                  ..|..+..++.+.|++++|+..|++.++
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35566677777888888888888876654  322                  2566666677777777777777777776


Q ss_pred             cCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHc
Q 043068          187 ENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPN-LLAYNTMING-FCKKGELEEAKKCMNEMMNR  255 (526)
Q Consensus       187 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~  255 (526)
                      ..  |.+...|..+..+|...|++++|.+.|++. .+.|+ ...+..+... ....+..+.+.++|.+|...
T Consensus       259 ~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          259 EE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             HC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred             hC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            65  556677777777777777777777777765 33333 2333333333 22334555666666666544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.96  E-value=9.7e-05  Score=59.99  Aligned_cols=92  Identities=13%  Similarity=0.004  Sum_probs=57.9

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC------Ch-----hhHHHHHHHHHhcCChhHHHHHHHHHHHc-------
Q 043068          126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGA------CL-----YSYNSLLGVLVRVNSIKLAEEFFHQIVKE-------  187 (526)
Q Consensus       126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------  187 (526)
                      +......+.+.|++++|+..|++..+..+..      +.     ..|..+..++.+.|++++|+..|++.++.       
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            4456667778888999999888888776431      12     26667777777777777777777776654       


Q ss_pred             CCCCCCHHHH----HHHHHHHHHcCChhhHHHHHHh
Q 043068          188 NVVPPDVSTY----TTMIRGYCKMGMIENAKKVFDV  219 (526)
Q Consensus       188 ~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~  219 (526)
                      .  |.+...|    .....++...|++++|+..|++
T Consensus        94 ~--pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k  127 (159)
T 2hr2_A           94 N--QDEGKLWISAVYSRALALDGLGRGAEAMPEFKK  127 (159)
T ss_dssp             T--STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             C--CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence            3  3334444    4555555555555555555544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.93  E-value=2.3e-05  Score=59.97  Aligned_cols=94  Identities=10%  Similarity=0.035  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC------HHHH
Q 043068          124 FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD------VSTY  197 (526)
Q Consensus       124 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~  197 (526)
                      ..+..+...+...|++++|++.|++.....+ .+...+..+..++.+.|++++|++.|++.++..  |.+      ...+
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~   81 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKLQ   81 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHHH
Confidence            3566777788888888888888888887664 457778888888888888888888888888765  444      6667


Q ss_pred             HHHHHHHHHcCChhhHHHHHHhC
Q 043068          198 TTMIRGYCKMGMIENAKKVFDVM  220 (526)
Q Consensus       198 ~~li~~~~~~g~~~~A~~~~~~~  220 (526)
                      ..+..++...|+.+.|.+.++++
T Consensus        82 ~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHHhHhhhHhHHHHh
Confidence            77777777778777777666654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.91  E-value=3e-05  Score=73.18  Aligned_cols=146  Identities=14%  Similarity=0.142  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043068          227 LAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGL  306 (526)
Q Consensus       227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  306 (526)
                      ..+..+...+.+.|++++|+..|++.+..  .|+...       +...++.+++...+.          ...|..+..+|
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~  240 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence            34556666677777777777777776654  233221       112222333222111          12566677777


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHHcCCHHH
Q 043068          307 CVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPT-VFSFNAVFRI-LVENGELDR  384 (526)
Q Consensus       307 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~-~~~~g~~~~  384 (526)
                      .+.|++++|+..+++.++.... +...|..+..+|...|++++|+..|++..+.  .|+ ...+..+... ....+..++
T Consensus       241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777766433 5667777777777777777777777776654  232 3334444333 233455666


Q ss_pred             HHHHHHHccc
Q 043068          385 AILLLKQMPQ  394 (526)
Q Consensus       385 a~~~~~~~~~  394 (526)
                      +.++|..|..
T Consensus       318 a~~~~~~~l~  327 (338)
T 2if4_A          318 QKEMYKGIFK  327 (338)
T ss_dssp             ----------
T ss_pred             HHHHHHHhhC
Confidence            7777777765

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.80  E-value=7.3e-05  Score=73.74  Aligned_cols=121  Identities=10%  Similarity=-0.028  Sum_probs=61.6

Q ss_pred             HHhcCChhHHHHHHHHHHHcC--CC----CCCHHHHHHHHHHHHHcCChhhHHHHHHhC--------C-CCCC-HHHHHH
Q 043068          168 LVRVNSIKLAEEFFHQIVKEN--VV----PPDVSTYTTMIRGYCKMGMIENAKKVFDVM--------T-VKPN-LLAYNT  231 (526)
Q Consensus       168 ~~~~g~~~~A~~~~~~~~~~~--~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~-~~p~-~~~~~~  231 (526)
                      +...|++++|+.++++.++..  .+    +....+++.|..+|...|++++|..++++.        | ..|+ ..+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            345666777766666655421  01    112345666666666666666666666553        1 1222 234566


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068          232 MINGFCKKGELEEAKKCMNEMMNR-----GCR-PN-ELTYNAMIYGLCINGRVDEAKMLMAKMR  288 (526)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~  288 (526)
                      |...|...|++++|+.++++.++.     |.. |+ ..+.+.+..++...+.+++|+.+|..++
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~  462 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR  462 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666555432     211 11 1223334444445555555555555554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.77  E-value=0.00041  Score=50.50  Aligned_cols=82  Identities=16%  Similarity=0.225  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 043068          124 FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRG  203 (526)
Q Consensus       124 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~  203 (526)
                      ..+..+...+...|++++|+..|++.....+ .+...+..+..++.+.|++++|.+.|++..+..  |.+...+..+..+
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~   86 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence            3556677777788888888888888776653 356677778888888888888888888887765  6677777777766


Q ss_pred             HHHcC
Q 043068          204 YCKMG  208 (526)
Q Consensus       204 ~~~~g  208 (526)
                      +.+.|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            65543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.77  E-value=0.00014  Score=71.73  Aligned_cols=122  Identities=11%  Similarity=-0.019  Sum_probs=57.5

Q ss_pred             hcCCHHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C--CCCCHHhHHHHH
Q 043068          238 KKGELEEAKKCMNEMMNR---GCRP----NELTYNAMIYGLCINGRVDEAKMLMAKMRLN-----G--FKDNVSTHKSML  303 (526)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li  303 (526)
                      ..|++++|+.++++.++.   -+.|    ...+++.|..+|...|++++|+.++++..+.     |  .+....+++.|.
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  400 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG  400 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            445555555555544332   0111    1234455555555555555555555544321     1  111223455555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHH-----cCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068          304 KGLCVVGKFDQAVGYLRNVME-----ANMN-P-DVKSYEVVINGFCKIGKSDEAISLLKEMRA  359 (526)
Q Consensus       304 ~~~~~~g~~~~A~~~~~~~~~-----~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  359 (526)
                      ..|...|++++|+.++++..+     .|.. | ...+.+.+..++...+.+++|+.+|.++++
T Consensus       401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555442     1221 1 122344455555566666666666666654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.76  E-value=0.00034  Score=56.07  Aligned_cols=110  Identities=11%  Similarity=0.014  Sum_probs=57.5

Q ss_pred             CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCChhhH
Q 043068          138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK----MGMIENA  213 (526)
Q Consensus       138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A  213 (526)
                      ++++|+++|++..+.+. +.  ..  +...|...+.+++|.+.|++..+.|    +...+..|...|..    .+++++|
T Consensus        10 d~~~A~~~~~~aa~~g~-~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A           10 DLKKAIQYYVKACELNE-MF--GC--LSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHTTC-TT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHcCCC-Hh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            45666666666655542 22  22  4445555555666666666665554    45555555555555    4555555


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 043068          214 KKVFDVMTVKPNLLAYNTMINGFCK----KGELEEAKKCMNEMMNRG  256 (526)
Q Consensus       214 ~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g  256 (526)
                      .++|++.-..-+...+..|...|..    .++.++|.+.|++..+.|
T Consensus        81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            5555554112344444455555554    455555555555554443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.75  E-value=0.00079  Score=53.87  Aligned_cols=16  Identities=13%  Similarity=0.142  Sum_probs=7.0

Q ss_pred             CHHHHHHHHHHHHHcC
Q 043068          241 ELEEAKKCMNEMMNRG  256 (526)
Q Consensus       241 ~~~~A~~~~~~m~~~g  256 (526)
                      ++++|++.|++..+.|
T Consensus        10 d~~~A~~~~~~aa~~g   25 (138)
T 1klx_A           10 DLKKAIQYYVKACELN   25 (138)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCC
Confidence            3444444444444443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.75  E-value=0.00013  Score=56.26  Aligned_cols=77  Identities=8%  Similarity=-0.010  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068          141 AAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM  220 (526)
Q Consensus       141 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  220 (526)
                      +|++.|++.....+ .+...+..+...+...|++++|+..|++.++..  |.+...|..+..++...|++++|...|++.
T Consensus         3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45566666655543 345666666666777777777777777766665  556666666666676777777766666654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.69  E-value=3.5e-05  Score=58.88  Aligned_cols=92  Identities=10%  Similarity=0.056  Sum_probs=67.0

Q ss_pred             ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCC-------HHH
Q 043068          157 CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPN-------LLA  228 (526)
Q Consensus       157 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------~~~  228 (526)
                      +...+..+...+.+.|++++|++.|++.++..  |.+...+..+..++.+.|++++|.+.+++. ...|+       ...
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~   80 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence            34567777888888888888888888888876  677888888888888888888888888876 44454       445


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHH
Q 043068          229 YNTMINGFCKKGELEEAKKCMN  250 (526)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~  250 (526)
                      +..+..++...|+.+.|...++
T Consensus        81 ~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHHhHhhhHhHHH
Confidence            5556666666666555554443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.58  E-value=0.0011  Score=48.05  Aligned_cols=24  Identities=17%  Similarity=0.433  Sum_probs=9.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Q 043068          300 KSMLKGLCVVGKFDQAVGYLRNVM  323 (526)
Q Consensus       300 ~~li~~~~~~g~~~~A~~~~~~~~  323 (526)
                      ..+...+.+.|++++|...+++..
T Consensus        47 ~~l~~~~~~~~~~~~A~~~~~~a~   70 (91)
T 1na3_A           47 YNLGNAYYKQGDYDEAIEYYQKAL   70 (91)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHH
Confidence            333333333333333333333333

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.58  E-value=0.0005  Score=52.86  Aligned_cols=78  Identities=14%  Similarity=-0.013  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068          245 AKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVME  324 (526)
Q Consensus       245 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  324 (526)
                      |+..|++..+... .+...+..+...|...|++++|+..|++..+.. +.+...+..+..+|...|++++|...|++..+
T Consensus         4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4444555444322 134455555555555555555555555555443 33444555555555555555555555555443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.58  E-value=0.00011  Score=59.43  Aligned_cols=71  Identities=10%  Similarity=-0.017  Sum_probs=47.5

Q ss_pred             cCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh----------hHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068          135 DRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSI----------KLAEEFFHQIVKENVVPPDVSTYTTMIRGY  204 (526)
Q Consensus       135 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~li~~~  204 (526)
                      +.+.+++|++.+++..+..+ .+...|..+..++...+++          ++|+..|++.++..  |.+..+|..+..+|
T Consensus        14 r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay   90 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHH
Confidence            34556777777777766664 4566666666666666554          47777777777765  66677777777777


Q ss_pred             HHcC
Q 043068          205 CKMG  208 (526)
Q Consensus       205 ~~~g  208 (526)
                      ...|
T Consensus        91 ~~lg   94 (158)
T 1zu2_A           91 TSFA   94 (158)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7664

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.53  E-value=0.00039  Score=56.28  Aligned_cols=92  Identities=7%  Similarity=0.034  Sum_probs=46.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043068          275 GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGK----------FDQAVGYLRNVMEANMNPDVKSYEVVINGFCKI  344 (526)
Q Consensus       275 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~  344 (526)
                      +.+++|.+.++...+.. +.+...|..+..++...++          +++|+..|++.++.++. +..+|..+..+|...
T Consensus        16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence            33444444444444433 3344444444444444433          34666666666665443 455566666666554


Q ss_pred             C-----------ChhHHHHHHHHHHHCCCCCCHHHHH
Q 043068          345 G-----------KSDEAISLLKEMRARGLKPTVFSFN  370 (526)
Q Consensus       345 g-----------~~~~A~~~~~~m~~~~~~p~~~~~~  370 (526)
                      |           ++++|++.|++..+.  .|+...|.
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~  128 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL  128 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHH
Confidence            3           556666666665554  44444443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.51  E-value=0.00044  Score=51.77  Aligned_cols=84  Identities=13%  Similarity=0.085  Sum_probs=50.6

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 043068          122 SDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMI  201 (526)
Q Consensus       122 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li  201 (526)
                      ++..+..+...|...|++++|+..|+++.+.++ .+...|..+..+|...|++++|++.|++.++...-.++......+.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~   84 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ   84 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence            344566666777777777777777777766653 3455666777777777777777777776664321123444444444


Q ss_pred             HHHHH
Q 043068          202 RGYCK  206 (526)
Q Consensus       202 ~~~~~  206 (526)
                      ..+.+
T Consensus        85 ~~l~~   89 (100)
T 3ma5_A           85 DAKLK   89 (100)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.34  E-value=0.00074  Score=50.46  Aligned_cols=62  Identities=16%  Similarity=0.249  Sum_probs=46.3

Q ss_pred             ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068          157 CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM  220 (526)
Q Consensus       157 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  220 (526)
                      +...+..+...+.+.|++++|++.|++.++..  |.+..+|..+..+|.+.|++++|.+.|++.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45667777777777788888888888777775  566677777777777778877777777664

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.24  E-value=0.011  Score=54.94  Aligned_cols=131  Identities=12%  Similarity=-0.007  Sum_probs=67.5

Q ss_pred             CChhhHHHHHHHHHh--cC---ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc---CC--------hhhHHHHHHh
Q 043068          156 ACLYSYNSLLGVLVR--VN---SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKM---GM--------IENAKKVFDV  219 (526)
Q Consensus       156 ~~~~~~~~li~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~--------~~~A~~~~~~  219 (526)
                      .+..+|...+++...  .+   ...+|..+|++.++..  |.....|..+.-+|...   +.        ...+.+....
T Consensus       192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a  269 (372)
T 3ly7_A          192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT  269 (372)
T ss_dssp             SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence            556677766655432  22   3577888888888876  66666666555555410   00        0011111111


Q ss_pred             C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068          220 M-TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLN  290 (526)
Q Consensus       220 ~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  290 (526)
                      + ..+.+...|..+...+...|++++|...+++....+  |+...|..+...+.-.|++++|.+.|+++...
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            1 113344455555444444555555555555555553  45445555555555555555555555555443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.10  E-value=0.055  Score=50.36  Aligned_cols=71  Identities=11%  Similarity=-0.002  Sum_probs=39.3

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHH
Q 043068          330 DVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSY  404 (526)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  404 (526)
                      +..+|..+...+...|++++|+..++++...+  |+...|..+...+.-.|++++|.+.+++...  +.|...+|
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~  346 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL  346 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence            45555555555555566666666666665553  4555555555555556666666666665555  23555444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.06  E-value=0.0021  Score=47.61  Aligned_cols=66  Identities=15%  Similarity=0.164  Sum_probs=44.7

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHH
Q 043068          129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLY-SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTY  197 (526)
Q Consensus       129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  197 (526)
                      ....+...|++++|+..|+++....+ .+.. .+..+..++...|++++|++.|++.++..  |.+..++
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~   72 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN--PDSPALQ   72 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHH
Confidence            34456667777777777777776653 3455 67777777777777777777777777765  4444444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.03  E-value=0.011  Score=43.25  Aligned_cols=72  Identities=7%  Similarity=0.003  Sum_probs=58.1

Q ss_pred             cCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068          399 PNFVSYNTIICGLCMAKGR--MQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLL  471 (526)
Q Consensus       399 p~~~~~~~ll~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~  471 (526)
                      .+...+..+..+++...|.  .++|..++++.++..+. +......+...+.+.|++++|+..|+++++.++..|
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            4556666666666544232  79999999999998766 888999999999999999999999999999988643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.81  E-value=0.046  Score=57.93  Aligned_cols=125  Identities=10%  Similarity=0.034  Sum_probs=71.0

Q ss_pred             HcCCCHHHHHH-HHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhh
Q 043068          134 GDRGNVKAAIF-WFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIEN  212 (526)
Q Consensus       134 ~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  212 (526)
                      ...+++++|.+ ++..+      ++......++..+.+.|..+.|.++.+.          ..   .-.......|++++
T Consensus       610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~----------~~---~~f~~~l~~~~~~~  670 (814)
T 3mkq_A          610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD----------QD---QKFELALKVGQLTL  670 (814)
T ss_dssp             HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC----------HH---HHHHHHHHHTCHHH
T ss_pred             HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC----------cc---hheehhhhcCCHHH
Confidence            34667777765 43111      1012225666666777777777655421          11   11233456677777


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068          213 AKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRL  289 (526)
Q Consensus       213 A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  289 (526)
                      |.++.+.+.   +...|..+...+.+.|+++.|++.|.++.+         |..+...+...|+.+...++.+....
T Consensus       671 A~~~~~~~~---~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~  735 (814)
T 3mkq_A          671 ARDLLTDES---AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET  735 (814)
T ss_dssp             HHHHHTTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhC---cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence            777766653   556777777777777777777777776642         23344444556666655544444443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.75  E-value=0.011  Score=43.48  Aligned_cols=61  Identities=10%  Similarity=0.164  Sum_probs=48.5

Q ss_pred             HHhcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccch
Q 043068          411 LCMAKGRMQDVEDLVDRMIRSGHNLDFT-MYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKL  473 (526)
Q Consensus       411 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  473 (526)
                      +... |++++|.+.++++++..+. +.. .|..+..+|.+.|++++|++.|++.++.++..+..
T Consensus        10 ~~~~-~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~   71 (99)
T 2kc7_A           10 LINQ-GDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL   71 (99)
T ss_dssp             HHHH-TCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred             HHHc-CCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence            3344 8899999999988886544 667 88888888999999999999999999888766543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.73  E-value=0.024  Score=54.92  Aligned_cols=104  Identities=6%  Similarity=-0.045  Sum_probs=65.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHcccC---CCCcC----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC-----CC-CCC-HH
Q 043068          373 FRILVENGELDRAILLLKQMPQM---DCLPN----FVSYNTIICGLCMAKGRMQDVEDLVDRMIRS-----GH-NLD-FT  438 (526)
Q Consensus       373 i~~~~~~g~~~~a~~~~~~~~~~---~~~p~----~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~-~~  438 (526)
                      +..+.+.|++++|..++++..+.   -+.|+    ..+++.+...|... |++++|+.+++++++.     |. .|+ ..
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~-g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL-GLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            33455667777777777766531   11122    34556666665554 7888888877776642     22 222 34


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCccchhhhH
Q 043068          439 MYSCLLKGYCEEGNVENVMQIAHEMVT-----KKGRLLKLKNFL  477 (526)
Q Consensus       439 ~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~  477 (526)
                      +++.|...|...|++++|+.++++.++     .|++.|.....+
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~  416 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI  416 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            678888888888998888888887764     466666554443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.67  E-value=0.093  Score=43.05  Aligned_cols=130  Identities=12%  Similarity=0.112  Sum_probs=86.5

Q ss_pred             HHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 043068           99 TDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAE  178 (526)
Q Consensus        99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  178 (526)
                      .+.....|+++.|.++.+..  .+...|..|.......|+++-|...|.+...         +..+.-.|.-.|+.+...
T Consensus        12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence            34556678888888887765  3566788888888888888888888877543         445666677778877777


Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043068          179 EFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEM  252 (526)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  252 (526)
                      ++-+....+|       -++.....+.-.|+++++.++|.+.+.-|....      .....|..+.|.++.+++
T Consensus        81 kla~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           81 KMQNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence            6666666555       244455556677888888888887763332211      112256667777776654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.66  E-value=0.0049  Score=59.66  Aligned_cols=48  Identities=6%  Similarity=-0.186  Sum_probs=22.8

Q ss_pred             CCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043068          240 GELEEAKKCMNEMMNR---GCRPN----ELTYNAMIYGLCINGRVDEAKMLMAKM  287 (526)
Q Consensus       240 g~~~~A~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~  287 (526)
                      |++++|+.++++.++.   -+.|+    ..+++.|..+|...|++++|+.+++++
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a  366 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI  366 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            4555555555554432   11111    234455555555555555555555544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.62  E-value=0.024  Score=60.16  Aligned_cols=183  Identities=12%  Similarity=0.021  Sum_probs=92.9

Q ss_pred             HhcCChhHHHH-HHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHH
Q 043068           63 YEQTNPYHALF-FFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKA  141 (526)
Q Consensus        63 ~~~~~~~~Al~-~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  141 (526)
                      ...++++.|.+ ++..+.           +......++..+.+.|..++|..+.+.     +.   .-.......|++++
T Consensus       610 ~~~~~~~~a~~~~l~~i~-----------~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~~---~~f~~~l~~~~~~~  670 (814)
T 3mkq_A          610 TLRGEIEEAIENVLPNVE-----------GKDSLTKIARFLEGQEYYEEALNISPD-----QD---QKFELALKVGQLTL  670 (814)
T ss_dssp             HHTTCHHHHHHHTGGGCC-----------CHHHHHHHHHHHHHTTCHHHHHHHCCC-----HH---HHHHHHHHHTCHHH
T ss_pred             HHhCCHHHHHHHHHhcCC-----------chHHHHHHHHHHHhCCChHHheecCCC-----cc---hheehhhhcCCHHH
Confidence            34678888876 442110           011135566667777777777766532     11   11223455677777


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC------CCCCHHHHHHHHHHHHHcCChhhHHH
Q 043068          142 AIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENV------VPPDVSTYTTMIRGYCKMGMIENAKK  215 (526)
Q Consensus       142 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~  215 (526)
                      |.++.+.+      .+...|..+...+.+.++++.|++.|..+..-..      ...+..-...+.......|+++.|..
T Consensus       671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~  744 (814)
T 3mkq_A          671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFN  744 (814)
T ss_dssp             HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHH
Confidence            77765432      3466777777777777777777777776532110      01122223333344444444444444


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHH
Q 043068          216 VFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE----LTYNAMIYGLCINGRVDEAK  281 (526)
Q Consensus       216 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~  281 (526)
                      .|...+      -+...+..|.+.+++++|..+-+.     ..|..    .........+...|+.+.|.
T Consensus       745 ~~~~~g------~~~~a~~~~~~~~~~~~A~~lA~~-----~~~~~~~i~~~~~~~~~~L~~~~~~~~a~  803 (814)
T 3mkq_A          745 AYWIAG------DIQGAKDLLIKSQRFSEAAFLGST-----YGLGDNEVNDIVTKWKENLILNGKNTVSE  803 (814)
T ss_dssp             HHHHHT------CHHHHHHHHHHTTCHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHTTTCHHHHT
T ss_pred             HHHHcC------CHHHHHHHHHHcCChHHHHHHHHH-----hCCChHHHHHHHHHHHHHHHhccchhHHH
Confidence            444332      122344445555555555555443     23344    33334444455566654443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.55  E-value=0.012  Score=56.93  Aligned_cols=88  Identities=14%  Similarity=0.073  Sum_probs=45.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHcC---CCC----CHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC-C-CHHHHHH
Q 043068          271 LCINGRVDEAKMLMAKMRLNG---FKD----NVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA-----NMN-P-DVKSYEV  336 (526)
Q Consensus       271 ~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~  336 (526)
                      +.+.|++++|+.++++..+..   +.+    ...+++.++..|...|++++|+.+++++++.     |.. | ...+++.
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            344555555555555554320   111    1234555555566666666666555554431     111 1 2234666


Q ss_pred             HHHHHHhcCChhHHHHHHHHHH
Q 043068          337 VINGFCKIGKSDEAISLLKEMR  358 (526)
Q Consensus       337 li~~~~~~g~~~~A~~~~~~m~  358 (526)
                      |...|...|++++|+.++++..
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHH
Confidence            6666666666666666666554

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.51  E-value=0.15  Score=39.25  Aligned_cols=83  Identities=11%  Similarity=0.052  Sum_probs=42.5

Q ss_pred             cCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068          207 MGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAK  286 (526)
Q Consensus       207 ~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  286 (526)
                      .|++..+..-+-.++  .+.......++.+...|.-|+-.+++.++.. +.+|++.....+..+|.+.|+..+|.+++.+
T Consensus        74 C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~  150 (172)
T 1wy6_A           74 CQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE  150 (172)
T ss_dssp             CSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence            344444444444433  1333444555555556666666666655433 2344555555566666666666666666666


Q ss_pred             HHHcCC
Q 043068          287 MRLNGF  292 (526)
Q Consensus       287 ~~~~~~  292 (526)
                      +-+.|+
T Consensus       151 AC~kG~  156 (172)
T 1wy6_A          151 ACKKGE  156 (172)
T ss_dssp             HHHTTC
T ss_pred             HHHhhh
Confidence            555553

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.41  E-value=0.4  Score=42.82  Aligned_cols=92  Identities=12%  Similarity=0.153  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHc-CCH
Q 043068          242 LEEAKKCMNEMMNRGCRPN---ELTYNAMIYGLCIN-----GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV-GKF  312 (526)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~  312 (526)
                      ...|..++++.++.  .|+   ...|..+...|.+.     |+.++|.+.|++..+....-+..++......++.. |+.
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            45667777777765  455   45777888888874     88888888888888765222467777778888774 888


Q ss_pred             HHHHHHHHHHHHcCCC--CCHHHHH
Q 043068          313 DQAVGYLRNVMEANMN--PDVKSYE  335 (526)
Q Consensus       313 ~~A~~~~~~~~~~~~~--~~~~~~~  335 (526)
                      +++.+.+++.+...+.  |+....+
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~~~lan  281 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPHNKLLV  281 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCChhHHH
Confidence            8888888888887655  5544333

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.39  E-value=0.041  Score=41.08  Aligned_cols=76  Identities=7%  Similarity=0.045  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchh
Q 043068          401 FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSG------HNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLK  474 (526)
Q Consensus       401 ~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  474 (526)
                      ...+..+-..+... |++..|...++.+++.-      -.+...++..|..+|.+.|++++|...++++++..|..+...
T Consensus         5 a~dc~~lG~~~~~~-~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            5 AEDCFELGKVAYTE-ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHc-cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            33444555555554 88888888888877641      123567899999999999999999999999999998776654


Q ss_pred             hhH
Q 043068          475 NFL  477 (526)
Q Consensus       475 ~~~  477 (526)
                      +.+
T Consensus        84 ~n~   86 (104)
T 2v5f_A           84 GNL   86 (104)
T ss_dssp             HHH
T ss_pred             hhH
Confidence            443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.36  E-value=0.038  Score=41.26  Aligned_cols=73  Identities=11%  Similarity=0.008  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhcC------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHH
Q 043068          124 FFISKLIKAYGDRGNVKAAIFWFHQAKQIE------NGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTY  197 (526)
Q Consensus       124 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  197 (526)
                      .....|...+.+.|+++.|..+|+.+.+..      .......+..+..++.+.|+++.|...+++..+..  |.+..+.
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~   83 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQRAN   83 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHH
Confidence            334456666777777777777777765432      11234566777777777777777777777777654  4454443


Q ss_pred             H
Q 043068          198 T  198 (526)
Q Consensus       198 ~  198 (526)
                      +
T Consensus        84 ~   84 (104)
T 2v5f_A           84 G   84 (104)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.24  E-value=0.0099  Score=57.51  Aligned_cols=99  Identities=7%  Similarity=-0.010  Sum_probs=75.0

Q ss_pred             CCCHHHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCccchhhhHHHHHH
Q 043068          415 KGRMQDVEDLVDRMIRS-----GHN-LD-FTMYSCLLKGYCEEGNVENVMQIAHEMVT-----KKGRLLKLKNFLTRVVD  482 (526)
Q Consensus       415 ~g~~~~a~~~~~~~~~~-----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~~~~~~  482 (526)
                      .|++++|+.++++.++.     |.. |+ ..+++.|..+|...|++++|+.++++.++     .|+..|+....+.    
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~----  386 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL----  386 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH----
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH----
Confidence            47889999998887763     221 22 35789999999999999999999999875     4676776555443    


Q ss_pred             HHHHHHHHhcCccchhHHHHHHHHHHHHHHHhcCCc
Q 043068          483 ALLLMWIVTGGSWISRFVFVHQVVVIMERTVEDGKR  518 (526)
Q Consensus       483 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~  518 (526)
                       .+...+...+.|.++...+.+++.+.++.++..++
T Consensus       387 -nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp  421 (433)
T 3qww_A          387 -KLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHP  421 (433)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred             -HHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence             34444556788999999999999999998866654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.24  E-value=0.061  Score=39.18  Aligned_cols=66  Identities=12%  Similarity=0.048  Sum_probs=33.6

Q ss_pred             CCHHhHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068          294 DNVSTHKSMLKGLCVVGK---FDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR  360 (526)
Q Consensus       294 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  360 (526)
                      .+...+..+..++...++   .++|..++++.++.++. +......+...+.+.|++++|+..|+++.+.
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            344444444444443333   45555555555555433 4455555555555555555555555555544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.22  E-value=0.032  Score=44.57  Aligned_cols=92  Identities=9%  Similarity=0.027  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhCCCHHHH
Q 043068          382 LDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKG---RMQDVEDLVDRMIRSGHNL--DFTMYSCLLKGYCEEGNVENV  456 (526)
Q Consensus       382 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a  456 (526)
                      +..+.+-|.+..+.+. ++..+...+-.++++. +   +++++..++++..+.+ .|  +...+-.|.-+|.+.|++++|
T Consensus        14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S-~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRS-KYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence            3444555555544443 4555544444455554 4   5667888888877754 23  355666777788888888888


Q ss_pred             HHHHHHHHHcCCCccchhhh
Q 043068          457 MQIAHEMVTKKGRLLKLKNF  476 (526)
Q Consensus       457 ~~~~~~m~~~~~~~~~~~~~  476 (526)
                      ++.++++++..|......+.
T Consensus        91 ~~y~~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           91 LKYVRGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             HHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHH
Confidence            88888888888865544443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.22  E-value=0.39  Score=39.32  Aligned_cols=127  Identities=12%  Similarity=0.130  Sum_probs=68.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 043068          271 LCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEA  350 (526)
Q Consensus       271 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  350 (526)
                      ..+.|+++.|.++.+.+      .+...|..+.......|+++-|.+.|.+...         +..+.-.|...|+.++-
T Consensus        15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L   79 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL   79 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred             HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence            34556666666665544      3455666666666666666666666665432         33444455556666655


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 043068          351 ISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRM  428 (526)
Q Consensus       351 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~  428 (526)
                      .++-+.....|      -++.....+...|+++++.++|.+.-.   .|...       .+.+..|-.+.|.++.+.+
T Consensus        80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~-------~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY-------AVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH-------HHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH-------HHHHHcCcHHHHHHHHHHh
Confidence            55555444433      123444445556777777776655433   11111       1223346666666665554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.65  E-value=0.11  Score=41.50  Aligned_cols=65  Identities=9%  Similarity=0.079  Sum_probs=28.8

Q ss_pred             CCHHhHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068          294 DNVSTHKSMLKGLCVVG---KFDQAVGYLRNVMEANMNP--DVKSYEVVINGFCKIGKSDEAISLLKEMRA  359 (526)
Q Consensus       294 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  359 (526)
                      ++..+...+..++++.+   ++++++.+++++.+.+ .|  +...+-.+.-+|.+.|++++|.+.++.+.+
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            44444444444444444   3334555555544442 11  122333334444455555555555555544

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.23  E-value=3.4  Score=43.51  Aligned_cols=206  Identities=10%  Similarity=0.103  Sum_probs=102.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCC
Q 043068          271 LCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLK--GLCVVGKFDQAVGYLRNVMEANMNPDVKSY--EVVINGFCKIGK  346 (526)
Q Consensus       271 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~  346 (526)
                      ++-.|+-+....++..+.+..   +..+...++.  ++...|+.+.+..+.+.+.... .|....-  .++..+|+..|+
T Consensus       500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn  575 (963)
T 4ady_A          500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN  575 (963)
T ss_dssp             HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred             hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence            344566666666666655431   2233333333  3345677777777777766531 2222211  234456777778


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCC-HHHHHHHH
Q 043068          347 SDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGR-MQDVEDLV  425 (526)
Q Consensus       347 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~-~~~a~~~~  425 (526)
                      .....+++..+.+.. ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-++... |. ..++..++
T Consensus       576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~a-Gn~~~~aid~L  652 (963)
T 4ady_A          576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACA-GKGLQSAIDVL  652 (963)
T ss_dssp             HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTS-SSCCHHHHHHH
T ss_pred             HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhcc-CCCcHHHHHHH
Confidence            777777888777641 1122222333334444666666777776666543 35444433443333333 32 36777788


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHH--HhCCC-------HHHHHHHHHHHHHcCCCccchhhhHHHHHHHHHHH
Q 043068          426 DRMIRSGHNLDFTMYSCLLKGY--CEEGN-------VENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLM  487 (526)
Q Consensus       426 ~~~~~~~~~p~~~~~~~l~~~~--~~~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~  487 (526)
                      ..+..   .+|..+-..-+.++  .-.|.       +...++.+........ .....-|-+.++...+.+
T Consensus       653 ~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~-~d~~~~fga~iAqGll~a  719 (963)
T 4ady_A          653 DPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKH-QEGLAKFGACVAQGIMNA  719 (963)
T ss_dssp             HHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHTT
T ss_pred             HHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHhc
Confidence            88863   34544443333333  33343       2333333333333222 123334555555555554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.64  E-value=0.25  Score=37.86  Aligned_cols=94  Identities=9%  Similarity=0.010  Sum_probs=51.3

Q ss_pred             CHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHH
Q 043068          381 ELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRM---QDVEDLVDRMIRSGHN-LDFTMYSCLLKGYCEEGNVENV  456 (526)
Q Consensus       381 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~---~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a  456 (526)
                      .+..+.+-|.+....|. ++..+--.+..++.+. ...   .++..+++...+.+.+ -.....-.|.-++.+.|++++|
T Consensus        16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S-~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRT-RYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTS-SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence            33444444444433332 3433333333344333 333   3366667766654311 1334555666778888888888


Q ss_pred             HHHHHHHHHcCCCccchhhh
Q 043068          457 MQIAHEMVTKKGRLLKLKNF  476 (526)
Q Consensus       457 ~~~~~~m~~~~~~~~~~~~~  476 (526)
                      .+.++.+++..|....+...
T Consensus        94 ~~~~~~lL~~eP~n~QA~~L  113 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQAKEL  113 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHH
Confidence            88888888888766554444

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.62  E-value=0.32  Score=43.45  Aligned_cols=92  Identities=12%  Similarity=0.035  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCh
Q 043068          277 VDEAKMLMAKMRLNGFKDN---VSTHKSMLKGLCVV-----GKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKI-GKS  347 (526)
Q Consensus       277 ~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~  347 (526)
                      ...|...+++..+.  .|+   ...|..+...|.+.     |+.++|.+.|++.++.++.-+..++......++.. |+.
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            45677777777765  344   56888899999984     99999999999999986544577788888888884 999


Q ss_pred             hHHHHHHHHHHHCCCC--CCHHHHH
Q 043068          348 DEAISLLKEMRARGLK--PTVFSFN  370 (526)
Q Consensus       348 ~~A~~~~~~m~~~~~~--p~~~~~~  370 (526)
                      +++.+.+++.......  |+....+
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~~~lan  281 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPHNKLLV  281 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCChhHHH
Confidence            9999999999887555  5544333

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.37  E-value=0.55  Score=37.06  Aligned_cols=53  Identities=15%  Similarity=0.032  Sum_probs=28.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 043068          310 GKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLK  363 (526)
Q Consensus       310 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  363 (526)
                      ++.++|.++|+.++..+-.. ...|......-.+.|+..+|.+++.+....+.+
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            45556666666555442222 455555555555666666666666666555433

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.07  E-value=1.6  Score=33.75  Aligned_cols=140  Identities=17%  Similarity=0.078  Sum_probs=99.7

Q ss_pred             HhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043068          169 VRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKC  248 (526)
Q Consensus       169 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  248 (526)
                      .-.|.+++..++..+.....    +..-||.+|--....-+-+-..++++.+|.--|..          ..|++......
T Consensus        18 ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis----------~C~NlKrVi~C   83 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD----------KCQNLKSVVEC   83 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG----------GCSCTHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhhcCcH----------hhhcHHHHHHH
Confidence            34588888888888888754    56667777766666777777788888775433432          23444444444


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 043068          249 MNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN  328 (526)
Q Consensus       249 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  328 (526)
                      +-.+-     .+...+...++....+|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.+.-+.|.+
T Consensus        84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            43331     14455667778888889999988888886443 3778888888999999999999999999998888865

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=93.51  E-value=5.5e-05  Score=71.69  Aligned_cols=231  Identities=13%  Similarity=0.197  Sum_probs=135.8

Q ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 043068           93 PCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVN  172 (526)
Q Consensus        93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  172 (526)
                      .+|..++.+..+.++..+|.+-+-+...+  ..|..+|....+.|.+++-+..+.-.++..  .+...=+.|+-+|++.+
T Consensus        55 ~VWs~LgkAqL~~~~v~eAIdsyIkA~Dp--s~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~  130 (624)
T 3lvg_A           55 AVWSQLAKAQLQKGMVKEAIDSYIKADDP--SSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN  130 (624)
T ss_dssp             CCSSSHHHHTTTSSSCTTTTTSSCCCSCC--CSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSC
T ss_pred             cHHHHHHHHHHccCchHHHHHHHHhCCCh--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhC
Confidence            35778888888888888877766555433  346677888888899998888887655443  44555568888999988


Q ss_pred             ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043068          173 SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEM  252 (526)
Q Consensus       173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  252 (526)
                      +..+-.+++.        .||..-...+.+-|...|.++.|.-+|..+.      -|.-|..++.+.|++..|.+.-++ 
T Consensus       131 rL~elEefl~--------~~N~A~iq~VGDrcf~e~lYeAAKilys~is------N~akLAstLV~L~~yq~AVdaArK-  195 (624)
T 3lvg_A          131 RLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARK-  195 (624)
T ss_dssp             SSSTTTSTTS--------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC------CCTTTSSSSSSCSGGGSSTTTTTT-
T ss_pred             cHHHHHHHHc--------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc------cHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            8776544431        3555556677788888888888888887662      122233344455555555443222 


Q ss_pred             HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 043068          253 MNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVK  332 (526)
Q Consensus       253 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  332 (526)
                           .-+..||-.+-.+|...+.+.-|.-.--.+.-.   +  .-...++..|-..|.+++.+.+++.-.... .....
T Consensus       196 -----Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmG  264 (624)
T 3lvg_A          196 -----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMG  264 (624)
T ss_dssp             -----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHH
T ss_pred             -----cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHH
Confidence                 114455666666666666655554433333211   1  111224445555666666666655554321 22455


Q ss_pred             HHHHHHHHHHhcCChhHHHHHH
Q 043068          333 SYEVVINGFCKIGKSDEAISLL  354 (526)
Q Consensus       333 ~~~~li~~~~~~g~~~~A~~~~  354 (526)
                      .|+-|.-.|++- ++++..+.+
T Consensus       265 mFTELaILYsKY-~PeKlmEHl  285 (624)
T 3lvg_A          265 MFTELAILYSKF-KPQKMREHL  285 (624)
T ss_dssp             HHHHHHHHHHSS-CTTHHHHHH
T ss_pred             HHHHHHHHHHhc-CHHHHHHHH
Confidence            555555555543 344444333

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=93.42  E-value=0.4  Score=36.77  Aligned_cols=64  Identities=14%  Similarity=0.060  Sum_probs=27.3

Q ss_pred             CHHHHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068          330 DVKSYEVVINGFCKIGKSDE---AISLLKEMRARGLKP--TVFSFNAVFRILVENGELDRAILLLKQMPQ  394 (526)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  394 (526)
                      +..+--.+..++.+..+...   ++.+++++.+.+ .|  .....-.|.-++.+.|++++|.+.++.+++
T Consensus        34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34443344444444443333   444444444332 11  112222334445555555555555555554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.23  E-value=0.74  Score=36.33  Aligned_cols=103  Identities=15%  Similarity=0.138  Sum_probs=58.5

Q ss_pred             CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHHcCCHHHHHHHHHHHHHcC
Q 043068          225 NLLAYNTMINGFCKKGEL------EEAKKCMNEMMNRGCRPNEL----TYNAMIY---GLCINGRVDEAKMLMAKMRLNG  291 (526)
Q Consensus       225 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----~~~~li~---~~~~~g~~~~a~~~~~~~~~~~  291 (526)
                      |..+|-..+...-+.|+.      ++..++|++.... ++|+..    .|.-+--   .+...++.++|.++|+.+++..
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            445555555555555555      5555666655543 333210    1111000   1122367777777777776543


Q ss_pred             CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 043068          292 FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNP  329 (526)
Q Consensus       292 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~  329 (526)
                       +-=..+|......-.+.|+++.|.+++...+..+.+|
T Consensus        91 -KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           91 -KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             -TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             -HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence             2226667777777777788888888888877776664

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.64  E-value=3.8  Score=39.55  Aligned_cols=50  Identities=14%  Similarity=0.043  Sum_probs=29.1

Q ss_pred             CChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHH
Q 043068           66 TNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLL  115 (526)
Q Consensus        66 ~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  115 (526)
                      ++++.|+.-+....++.........+......++.++.+.++++...+.+
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i   79 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQL   79 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            66777777654443322222233344556677777787788777765544

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=92.37  E-value=3.7e-05  Score=72.86  Aligned_cols=264  Identities=15%  Similarity=0.079  Sum_probs=187.5

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 043068          123 DFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIR  202 (526)
Q Consensus       123 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~  202 (526)
                      +.+|+.|.++....+++.+|++.|-+.      .|...|..++....+.|.+++-++.+.-..+.   ..+...=+.|+-
T Consensus        54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~  124 (624)
T 3lvg_A           54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIF  124 (624)
T ss_dssp             CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHH
T ss_pred             ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHH
Confidence            457889999999999999999877432      45677889999999999999998887665544   335566678999


Q ss_pred             HHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043068          203 GYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKM  282 (526)
Q Consensus       203 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~  282 (526)
                      +|++.+++.+-.+++.    .||..-...+.+-|...|.++.|.-+|..+.         -|..|..++.+.|++..|.+
T Consensus       125 ayAk~~rL~elEefl~----~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AVd  191 (624)
T 3lvg_A          125 ALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVD  191 (624)
T ss_dssp             HHHTSCSSSTTTSTTS----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSSTT
T ss_pred             HHHhhCcHHHHHHHHc----CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHHH
Confidence            9999999887555443    5777777888999999999999988876543         24555667778888887765


Q ss_pred             HHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043068          283 LMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGL  362 (526)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  362 (526)
                      .-++      ..++.||..+-.+|...+++.-|.-.--.++-..   |  -...++..|...|.+++-+.+++.-... -
T Consensus       192 aArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEaglgl-E  259 (624)
T 3lvg_A          192 GARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAALGL-E  259 (624)
T ss_dssp             TTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-T
T ss_pred             HHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-C
Confidence            4433      4577899999999999999887755444443221   1  1335677899999999999999987633 2


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccC-CCC------cCHHHHHHHHHHHHhcCCCHHHHH
Q 043068          363 KPTVFSFNAVFRILVENGELDRAILLLKQMPQM-DCL------PNFVSYNTIICGLCMAKGRMQDVE  422 (526)
Q Consensus       363 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~------p~~~~~~~ll~~~~~~~g~~~~a~  422 (526)
                      +.....|+-|.-.|++- ++++.++.++..-.+ +++      -....|.-++-.|+.- ..++.|.
T Consensus       260 rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~y-dE~DnA~  324 (624)
T 3lvg_A          260 RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY-EEYDNAI  324 (624)
T ss_dssp             TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHH-TCHHHHH
T ss_pred             chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcc-hhHHHHH
Confidence            45677888888887764 566777766654432 111      1223455555555543 5555443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.18  E-value=0.51  Score=48.61  Aligned_cols=52  Identities=10%  Similarity=0.129  Sum_probs=43.6

Q ss_pred             HhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043068          412 CMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMV  464 (526)
Q Consensus       412 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  464 (526)
                      |...|+++-|+++.++.+..-+. +..+|..|..+|.+.|+++.|+-.++.+.
T Consensus       347 Ll~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          347 LLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            44569999999999999886433 78899999999999999999999888773

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.15  E-value=7.2  Score=42.90  Aligned_cols=129  Identities=16%  Similarity=0.162  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043068          262 LTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNV----STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVV  337 (526)
Q Consensus       262 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  337 (526)
                      .-|..++..+-+.+.++.+.++-....+...+.+.    ..|..+.+.+...|++++|...+-.+.....+  ......|
T Consensus       900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L  977 (1139)
T 4fhn_B          900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF  977 (1139)
T ss_dssp             HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence            44566666666777777776666655543212221    24566677777777777777666666544322  3445555


Q ss_pred             HHHHHhcC------------ChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHc
Q 043068          338 INGFCKIG------------KSDEAISLLKEMRAR--GLKPTVFSFNAVFRILVENGELDRAIL-LLKQM  392 (526)
Q Consensus       338 i~~~~~~g------------~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~-~~~~~  392 (526)
                      +...|..|            ..++..+++..--+.  .....+..|..|-.-+...|++.+|-. +|+.+
T Consensus       978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B          978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp             HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence            55544443            344555555432211  011112334444445556666665444 34444

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=91.39  E-value=8.3  Score=35.19  Aligned_cols=168  Identities=12%  Similarity=0.089  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHH
Q 043068          195 STYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKC----MNEMMNRGCRPNELTYNAMIYG  270 (526)
Q Consensus       195 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~li~~  270 (526)
                      .+|.++..-|.+.+++++|.+++..            -...+.+.|+...|-++    ++-+.+.++++|......++..
T Consensus        36 Q~~RTi~~Ry~~~k~y~eAidLL~~------------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L  103 (336)
T 3lpz_A           36 QETRLVAARYSKQGNWAAAVDILAS------------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC  103 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHH------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            3556666678889999999887653            22234455665555444    3455556777787777777776


Q ss_pred             HHHcCCHH-HHHHHHHHHH----HcC--CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043068          271 LCINGRVD-EAKMLMAKMR----LNG--FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCK  343 (526)
Q Consensus       271 ~~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~  343 (526)
                      +.....-+ .=..+.+++.    +.|  ..-|+.....+...|.+.+++.+|...|-    .|-.+....+..++.-+..
T Consensus       104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~  179 (336)
T 3lpz_A          104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYK  179 (336)
T ss_dssp             HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHH
Confidence            66544311 1122333332    222  23466777888999999999999887762    2333334566555555544


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q 043068          344 IGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMP  393 (526)
Q Consensus       344 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~  393 (526)
                      .+...++              +... .-.+-.|.-.+++..|..+++...
T Consensus       180 ~~~~~e~--------------dlfi-aRaVL~yL~l~n~~~A~~~~~~f~  214 (336)
T 3lpz_A          180 QDESHTA--------------PLYC-ARAVLPYLLVANVRAANTAYRIFT  214 (336)
T ss_dssp             TSCGGGH--------------HHHH-HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hcCCccH--------------HHHH-HHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4432211              1111 122233555677777777655543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=91.39  E-value=1.2  Score=35.78  Aligned_cols=57  Identities=11%  Similarity=-0.104  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHhCCCHHHHHHHHHhcC-----CC---CHH----HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 043068           94 CYTAITDVLLSHSLISIAASLLKNSN-----KL---SDF----FISKLIKAYGDRGNVKAAIFWFHQAK  150 (526)
Q Consensus        94 ~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~---~~~----~~~~li~~~~~~g~~~~A~~~~~~~~  150 (526)
                      ++..-++.+...+.++.|.-+.....     .+   ++.    ++..+..++...|+|..|...|++..
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL   90 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL   90 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            35555666667777777666544211     11   111    34455666666677777776666653

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=90.90  E-value=2.8  Score=32.28  Aligned_cols=79  Identities=8%  Similarity=0.028  Sum_probs=54.0

Q ss_pred             CcCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhh
Q 043068          398 LPNFVSYNTIICGLCMA--KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKN  475 (526)
Q Consensus       398 ~p~~~~~~~ll~~~~~~--~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  475 (526)
                      .|+..+--.+..++.+.  ..+..++..+++...+.+..-....+-.|.-++.+.|++++|.+..+.+++..|....+..
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            34544433333333333  2345678888888887664334567777888999999999999999999999987665544


Q ss_pred             h
Q 043068          476 F  476 (526)
Q Consensus       476 ~  476 (526)
                      .
T Consensus       117 L  117 (134)
T 3o48_A          117 L  117 (134)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=90.86  E-value=18  Score=38.18  Aligned_cols=257  Identities=13%  Similarity=0.061  Sum_probs=114.9

Q ss_pred             HHHcCCCHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-C-----CCCHHHHHHHHHH
Q 043068          132 AYGDRGNVKAAIFWFHQAKQIENGAC--LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENV-V-----PPDVSTYTTMIRG  203 (526)
Q Consensus       132 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~-----~~~~~~~~~li~~  203 (526)
                      +....|+.++++..+......+...+  +..=..+.-+....|..+++..++...+.... +     .+....-..+.-+
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            45556777777766665443110112  22222333334445555566666666554320 0     0112222333333


Q ss_pred             HHHcCCh-hhHHHHHHhCCCCCCHH-H-HH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHHcCC
Q 043068          204 YCKMGMI-ENAKKVFDVMTVKPNLL-A-YN--TMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMI--YGLCINGR  276 (526)
Q Consensus       204 ~~~~g~~-~~A~~~~~~~~~~p~~~-~-~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~  276 (526)
                      ++-.|.- +++.+.+..+-...+.. . ..  +|...++..|+-+....++..+.+..   +......+.  -++...|+
T Consensus       463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~  539 (963)
T 4ady_A          463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR  539 (963)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred             HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence            3333321 23333333331011211 1 12  22333445566666666666655431   222222222  23335677


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHhH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043068          277 VDEAKMLMAKMRLNGFKDNVSTH--KSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLL  354 (526)
Q Consensus       277 ~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  354 (526)
                      .+.+..+++.+.... .|....-  .++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.+++
T Consensus       540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv  617 (963)
T 4ady_A          540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV  617 (963)
T ss_dssp             GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred             hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence            777777777665431 2222111  123445566677666666766666532 213333333333444456666666666


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHccc
Q 043068          355 KEMRARGLKPTVFSFNAVFRILVENGEL-DRAILLLKQMPQ  394 (526)
Q Consensus       355 ~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~  394 (526)
                      +.+.+.+ .|....-..+.-+....|.. .++++++..+..
T Consensus       618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            6555432 33333333333333334332 456666666654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=90.79  E-value=1.3  Score=45.73  Aligned_cols=50  Identities=16%  Similarity=0.239  Sum_probs=23.7

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068          307 CVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEM  357 (526)
Q Consensus       307 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  357 (526)
                      ...|+++.|+++-++....-+. +-.+|..|...|...|+++.|+-.++.+
T Consensus       348 l~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          348 LNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3445555555555544443221 3445555555555555555555444443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.28  E-value=0.98  Score=42.85  Aligned_cols=69  Identities=9%  Similarity=0.072  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 043068          196 TYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMN-----RGCRPNELTY  264 (526)
Q Consensus       196 ~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~  264 (526)
                      +...++..+...|+.++|...+..+  ..+-+...|..+|.++.+.|+..+|++.|+++.+     .|+.|+..+-
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~  248 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  248 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            3444566666777777777666655  2233556777777777777777777777776543     3777776653

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=90.20  E-value=2.7  Score=32.80  Aligned_cols=61  Identities=5%  Similarity=0.025  Sum_probs=44.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhh
Q 043068          416 GRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNF  476 (526)
Q Consensus       416 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  476 (526)
                      .+..++..+++...+.+..-.....-.|.-++.+.|++++|++..+.+++..|....+...
T Consensus        56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            3456778888888775544345566667778899999999999999999998866554444

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=89.63  E-value=1.7  Score=41.19  Aligned_cols=67  Identities=9%  Similarity=0.178  Sum_probs=42.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHH
Q 043068          301 SMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA-----RGLKPTVFS  368 (526)
Q Consensus       301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~  368 (526)
                      .++..+...|+.++|...+..+....+- +...|..+|.++.+.|+..+|++.|+++.+     .|+.|+..+
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            3555666667777777666666655432 666677777777777777777776666533     366665543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.45  E-value=13  Score=40.83  Aligned_cols=147  Identities=13%  Similarity=0.079  Sum_probs=93.6

Q ss_pred             HHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC---------------------
Q 043068           97 AITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENG---------------------  155 (526)
Q Consensus        97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---------------------  155 (526)
                      .++..+.+.+..+.+..+..-. +.++..--.+..+|...|++++|.+.|++... ++.                     
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~  894 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHH  894 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred             HHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccc
Confidence            3444555566666665544332 33444334555666677777777777765421 110                     


Q ss_pred             --CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHHcCChhhHHHHHHhCC-CCCCHHH
Q 043068          156 --ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDV----STYTTMIRGYCKMGMIENAKKVFDVMT-VKPNLLA  228 (526)
Q Consensus       156 --~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~  228 (526)
                        .-..-|..++..+.+.+.++.+.++-...++... +.+.    ..|..+.+.+...|++++|...+-.++ ..--...
T Consensus       895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~-~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c  973 (1139)
T 4fhn_B          895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC  973 (1139)
T ss_dssp             CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCC-SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred             cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence              0123478888899999999999988887776541 2222    257888999999999999988887762 1223556


Q ss_pred             HHHHHHHHHhcCCHHHHH
Q 043068          229 YNTMINGFCKKGELEEAK  246 (526)
Q Consensus       229 ~~~li~~~~~~g~~~~A~  246 (526)
                      ...++..+|..|..+.-.
T Consensus       974 Lr~LV~~lce~~~~~~L~  991 (1139)
T 4fhn_B          974 LLDFVNQLTKQGKINQLL  991 (1139)
T ss_dssp             HHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHhCCChhhhh
Confidence            777888888877765543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=87.03  E-value=3.1  Score=30.13  Aligned_cols=62  Identities=11%  Similarity=0.031  Sum_probs=45.3

Q ss_pred             CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 043068          138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMI  201 (526)
Q Consensus       138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li  201 (526)
                      +.=+..+.++.+...+.-|++.+..+.+++|.+.+++..|.++|+.++.+-  .....+|..++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~l   86 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVI   86 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHH
Confidence            445667777777777878888888888888888888888888888887653  23334565554

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.95  E-value=23  Score=34.11  Aligned_cols=235  Identities=11%  Similarity=0.082  Sum_probs=127.6

Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH----HcCChh--hHHHHHHhCC-CC-----C-
Q 043068          158 LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC----KMGMIE--NAKKVFDVMT-VK-----P-  224 (526)
Q Consensus       158 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~--~A~~~~~~~~-~~-----p-  224 (526)
                      ......++..|...|+++...+.+..+.+..+.  .......+++.+.    .....+  .-..+.+... +.     - 
T Consensus        56 ~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q--lk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE  133 (445)
T 4b4t_P           56 KEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ--LKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVE  133 (445)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT--SHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHH
Confidence            445556666677777777666666555543321  1222223333222    223222  1222333221 00     0 


Q ss_pred             --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCC
Q 043068          225 --NLLAYNTMINGFCKKGELEEAKKCMNEMMNR--GCRPN---ELTYNAMIYGLCINGRVDEAKMLMAKMRL----NGFK  293 (526)
Q Consensus       225 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~  293 (526)
                        .......|...+...|++.+|.+++.++...  |....   ...+...++.|...+++.+|..++.++..    ...+
T Consensus       134 ~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~  213 (445)
T 4b4t_P          134 VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY  213 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc
Confidence              1223456778888899999999999887643  22211   24566778888899999999998888642    2222


Q ss_pred             CC--HHhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHH----HHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 043068          294 DN--VSTHKSMLKGLCVVGKFDQAVGYLRNVMEA-NMNPDVKSYEVV----INGFCKIGKSDEAISLLKEMRARGLKPTV  366 (526)
Q Consensus       294 ~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~  366 (526)
                      |+  ...+...+..+...+++.+|.+.|.++.+. ...-|...+..+    +....-.+....--.++........-++.
T Consensus       214 ~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l  293 (445)
T 4b4t_P          214 ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKL  293 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhccccccc
Confidence            22  235566777788889999888888777643 111122222211    11111222222222233333222223466


Q ss_pred             HHHHHHHHHHHHc--CCHHHHHHHHHHccc
Q 043068          367 FSFNAVFRILVEN--GELDRAILLLKQMPQ  394 (526)
Q Consensus       367 ~~~~~li~~~~~~--g~~~~a~~~~~~~~~  394 (526)
                      ..|..++.+|...  .+++...+.|.....
T Consensus       294 ~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~  323 (445)
T 4b4t_P          294 ESQESLVKLFTTNELMRWPIVQKTYEPVLN  323 (445)
T ss_dssp             HHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred             HHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence            7788888888764  467777777766544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=86.35  E-value=9.7  Score=29.30  Aligned_cols=73  Identities=11%  Similarity=-0.024  Sum_probs=37.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHH
Q 043068          328 NPDVKSYEVVINGFCKIGKS---DEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFV  402 (526)
Q Consensus       328 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  402 (526)
                      .|+..+--.+..++.+..+.   .+++.+++++.+.+..-....+-.|.-++.+.|++++|.++.+.+.+  +.|+..
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~  112 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK  112 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence            34555544455555555433   34566666665443111223344455566666666666666666665  335543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=84.45  E-value=9.7  Score=27.62  Aligned_cols=54  Identities=7%  Similarity=0.094  Sum_probs=45.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc
Q 043068          417 RMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRL  470 (526)
Q Consensus       417 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~  470 (526)
                      +.-+..+-++.+......|++.+..+.+++|.+..++.-|.++++-+..+-...
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~   78 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH   78 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence            566777788888888889999999999999999999999999999888776544

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=84.11  E-value=14  Score=32.45  Aligned_cols=54  Identities=20%  Similarity=0.190  Sum_probs=33.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068          306 LCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR  360 (526)
Q Consensus       306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  360 (526)
                      ..+.|++++|++....-++..+. |...-..++..+|-.|++++|.+-++...+.
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            44566666666666666665443 5666666666666667777776666666554

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=84.11  E-value=24  Score=31.90  Aligned_cols=123  Identities=11%  Similarity=0.028  Sum_probs=65.9

Q ss_pred             HHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 043068          100 DVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEE  179 (526)
Q Consensus       100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  179 (526)
                      +..+..|++-+|.+.+           .++..-|.+.+++++|++++..-               ...+.+.|+...|-+
T Consensus        21 ~~~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~D   74 (312)
T 2wpv_A           21 ENKIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTD   74 (312)
T ss_dssp             HHHHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred             HHHhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHH
Confidence            3344556666666654           46677777788888887776532               123344455444443


Q ss_pred             H----HHHHHHcCCCCCCHHHHHHHHHHHHHcCC--------hhhHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 043068          180 F----FHQIVKENVVPPDVSTYTTMIRGYCKMGM--------IENAKKVFDVMT--VKPNLLAYNTMINGFCKKGELEEA  245 (526)
Q Consensus       180 ~----~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A  245 (526)
                      +    .+-..+.+ ++++......++..+.....        +.+|+++-.+.+  ..-+......+...|.+.|++.+|
T Consensus        75 La~llvev~~~~~-~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A  153 (312)
T 2wpv_A           75 LIFYLLEVYDLAE-VKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEA  153 (312)
T ss_dssp             HHHHHHHHHHHTT-CCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHH
Confidence            3    22222333 56666666666655544322        122233322221  123556666677777777777777


Q ss_pred             HHHH
Q 043068          246 KKCM  249 (526)
Q Consensus       246 ~~~~  249 (526)
                      ...|
T Consensus       154 ~~H~  157 (312)
T 2wpv_A          154 ERYF  157 (312)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=84.08  E-value=38  Score=34.13  Aligned_cols=250  Identities=11%  Similarity=-0.013  Sum_probs=121.5

Q ss_pred             HHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH-
Q 043068           98 ITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKL-  176 (526)
Q Consensus        98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-  176 (526)
                      -...+.+.+++.....++.. .+.+...-.....+....|+..+|......+=..+ ......+..++..+.+.|.+.. 
T Consensus        78 ~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~  155 (618)
T 1qsa_A           78 FVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPL  155 (618)
T ss_dssp             HHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHH
T ss_pred             HHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHH
Confidence            34556667777776665554 34444445556666667777666666555543333 2345566666666666554422 


Q ss_pred             -HHHHHHHHHHcCC----------CCCCHHHH-HHHHHHHHHcCChhhHHHHHHhCCCCCCHHH---HHHHHHHHHhcCC
Q 043068          177 -AEEFFHQIVKENV----------VPPDVSTY-TTMIRGYCKMGMIENAKKVFDVMTVKPNLLA---YNTMINGFCKKGE  241 (526)
Q Consensus       177 -A~~~~~~~~~~~~----------~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~---~~~li~~~~~~g~  241 (526)
                       ...=++.+...|.          ++++.... ..++..+   .+...+.......  .++...   +...+.-+.+ .+
T Consensus       156 ~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~~~--~~~~~~~~~~~~~~~rlar-~d  229 (618)
T 1qsa_A          156 AYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFARTT--GATDFTRQMAAVAFASVAR-QD  229 (618)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHHHS--CCCHHHHHHHHHHHHHHHH-HC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHhcc--CCChhhHHHHHHHHHHHHh-cC
Confidence             2233333333330          11111111 1111111   1122222222221  122211   1112222233 36


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHH
Q 043068          242 LEEAKKCMNEMMNRGCRPNELTYNAMIYG----LCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVG  317 (526)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  317 (526)
                      .+.|...+....+.+. .+......+-..    ....+...++...+......  ..+.....-.+....+.|+++.|..
T Consensus       230 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~  306 (618)
T 1qsa_A          230 AENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNT  306 (618)
T ss_dssp             HHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHH
Confidence            7788888877765432 233332222222    22334244555556554433  2333334444455556788888888


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068          318 YLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA  359 (526)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  359 (526)
                      .|+.|...... .....--+..++...|+.++|..+|+.+..
T Consensus       307 ~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          307 WLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            88777553221 344444566677778888888888777653

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=82.90  E-value=9.8  Score=30.59  Aligned_cols=57  Identities=7%  Similarity=-0.017  Sum_probs=29.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043068          231 TMINGFCKKGELEEAKKCMNEMMNRG-CRPNE-------LTYNAMIYGLCINGRVDEAKMLMAKM  287 (526)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~  287 (526)
                      .-+..+...|.++.|+-+.+.+.... ..|+.       .++..+.+++...|++.+|...|++.
T Consensus        25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA   89 (167)
T 3ffl_A           25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA   89 (167)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            34455555666666665555543321 12221       23444555666666666666666665

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=82.09  E-value=7.1  Score=34.26  Aligned_cols=53  Identities=19%  Similarity=0.335  Sum_probs=24.8

Q ss_pred             HHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043068          376 LVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIR  430 (526)
Q Consensus       376 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~  430 (526)
                      ..+.|+++++++....-++.. +-|...-..++..+|.. |+++.|.+-++...+
T Consensus         7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~-G~w~RA~~QL~~~a~   59 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCID-GDFERADEQLMQSIK   59 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence            334455555555554444432 22333333444444544 555555555555444

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.73  E-value=17  Score=34.69  Aligned_cols=18  Identities=22%  Similarity=0.381  Sum_probs=10.7

Q ss_pred             HcCCHHHHHHHHHHHHHc
Q 043068          308 VVGKFDQAVGYLRNVMEA  325 (526)
Q Consensus       308 ~~g~~~~A~~~~~~~~~~  325 (526)
                      ..+++..|...|-+....
T Consensus       220 ~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          220 AVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             GTSCHHHHHHHHHHHHHH
T ss_pred             HhChHHHHHHHHHHHhcc
Confidence            456666666666655443

>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}

Probab=81.48  E-value=19  Score=33.35  Aligned_cols=105  Identities=16%  Similarity=0.162  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043068          368 SFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKG--RMQDVEDLVDRMIRSGHNLDFTMYSCLLK  445 (526)
Q Consensus       368 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  445 (526)
                      ....++.-|...|+.++|.+.++++..-.+.+ ......+..++-+. +  ..+...+++..+...|+-+.......+  
T Consensus       219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~-~~~~re~~~~LL~~L~~~glls~~q~~~Gf--  294 (358)
T 3eiq_C          219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLEST-GESAFKMILDLLKSLWKSSTITIDQMKRGY--  294 (358)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHTTCSCHHHHHHHH--
T ss_pred             HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccC-chHHHHHHHHHHHHHHHCCCCCHHHHHHHH--
Confidence            35778888999999999999999987522222 23344444454332 2  245677788888777765433333322  


Q ss_pred             HHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHHHHH
Q 043068          446 GYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLM  487 (526)
Q Consensus       446 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~  487 (526)
                                 .++++.+-+...+.|.+..+++.++..++..
T Consensus       295 -----------~~vl~~ldDl~lDiP~A~~~la~~varai~~  325 (358)
T 3eiq_C          295 -----------ERIYNEIPDINLDVPHSYSVLERFVEECFQA  325 (358)
T ss_dssp             -----------HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             -----------HHHHHhccHhhcccccHHHHHHHHHHHHHHC
Confidence                       2355556566666788888887777766543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=80.92  E-value=37  Score=31.87  Aligned_cols=17  Identities=18%  Similarity=0.212  Sum_probs=10.5

Q ss_pred             CHHHHHHHHHHHHHcCC
Q 043068          452 NVENVMQIAHEMVTKKG  468 (526)
Q Consensus       452 ~~~~a~~~~~~m~~~~~  468 (526)
                      ..++++..+-+|+..|.
T Consensus       329 s~~evE~~L~~lI~dg~  345 (394)
T 3txn_A          329 PMPQVEKKLSQMILDKK  345 (394)
T ss_dssp             CHHHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHHCCC
Confidence            45666666666666553

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=80.78  E-value=38  Score=31.84  Aligned_cols=219  Identities=11%  Similarity=0.030  Sum_probs=92.7

Q ss_pred             HHHHHHHHcCChhhHHHHHHhC-----CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHH-
Q 043068          199 TMIRGYCKMGMIENAKKVFDVM-----TVKPN---LLAYNTMINGFCKKGELEEAKKCMNEMMNR--GCRPNELTYNAM-  267 (526)
Q Consensus       199 ~li~~~~~~g~~~~A~~~~~~~-----~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l-  267 (526)
                      -++..|...|++.+|.+++.++     .....   ...|-.-+..|...+++.++...+......  .+.+++.....+ 
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            3455555555555555555544     11101   223444455566666666666666555432  122333222111 


Q ss_pred             ---HHHHH-HcCCHHHHHHHHHHHHHcCCC---C---CHHhHHHHHHHHHHcCCHHHHHHHHH-HHHHcCCCCCHHHHHH
Q 043068          268 ---IYGLC-INGRVDEAKMLMAKMRLNGFK---D---NVSTHKSMLKGLCVVGKFDQAVGYLR-NVMEANMNPDVKSYEV  336 (526)
Q Consensus       268 ---i~~~~-~~g~~~~a~~~~~~~~~~~~~---~---~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~  336 (526)
                         ...+. ..+++..|...|-+..+.--.   |   +...|..+....  .++..+...++. .....-..|....+..
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pei~~l~~  261 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRDIDAMKS  261 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCccHHHHHH
Confidence               11233 456666666665554321000   1   111222222211  122222212211 1111112345555666


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCC
Q 043068          337 VINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKG  416 (526)
Q Consensus       337 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g  416 (526)
                      ++.+| ..+++.+..++++.... .+..|......+ ..+.+ .-...++   .++.+   +=+..++..+...+.   =
T Consensus       262 L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~-~~L~~-~Ir~~~L---~~i~~---pYsrIsl~~iA~~l~---l  328 (394)
T 3txn_A          262 VAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHL-GTLYD-TMLEQNL---CRIIE---PYSRVQVAHVAESIQ---L  328 (394)
T ss_dssp             HHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHH-HHHHH-HHHHHHH---HHHHT---TCSEEEHHHHHHHHT---C
T ss_pred             HHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHH-HHHHH-HHHHHHH---HHHhH---hhceeeHHHHHHHHC---c
Confidence            66665 45677776666665433 233344321111 11100 0001111   11111   112344555554442   2


Q ss_pred             CHHHHHHHHHHHHHCC
Q 043068          417 RMQDVEDLVDRMIRSG  432 (526)
Q Consensus       417 ~~~~a~~~~~~~~~~~  432 (526)
                      ..++++..+-+|+..|
T Consensus       329 s~~evE~~L~~lI~dg  344 (394)
T 3txn_A          329 PMPQVEKKLSQMILDK  344 (394)
T ss_dssp             CHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHCC
Confidence            6788888888888775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	526
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-07
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-04

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 36/233 (15%), Positives = 77/233 (33%), Gaps = 13/233 (5%)

Query: 191 PPDVSTYTTMIRGYCKMGMIENAKKVFD-VMTVKPNLL-AYNTMINGFCKKGELEEAKKC 248
           P     ++ +   +   G I  A   F+  +T+ PN L AY  + N   +    + A   
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225

Query: 249 MNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV 308
               ++         +  +       G +D A     +  +         + ++   L  
Sbjct: 226 YLRALSLSPNHAV-VHGNLACVYYEQGLIDLAIDTYRRA-IELQPHFPDAYCNLANALKE 283

Query: 309 VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPT-VF 367
            G   +A       +             + N   + G  +EA+ L +  +A  + P    
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNN-LANIKREQGNIEEAVRLYR--KALEVFPEFAA 340

Query: 368 SFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQD 420
           + + +  +L + G+L  A++  K+  ++   P F         +      MQD
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFAD---AYSNMGNTLKEMQD 388

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 3/133 (2%)

Query: 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKM 287
              T  N + K  + E A K  ++ +           N  +  L               +
Sbjct: 12  ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 71

Query: 288 RLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN-MNPDVKSYEVVINGFCKIGK 346
            L+  K  +  +         +GKF  A+     V++    + D K      N   K   
Sbjct: 72  ELD--KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129

Query: 347 SDEAISLLKEMRA 359
            + AI+  +  R+
Sbjct: 130 FERAIAGDEHKRS 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	526
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.93
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.93
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.68
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.64
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.35
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.32
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.31
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.26
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.21
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.2
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.16
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.12
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.11
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.09
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.71
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.71
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.63
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.61
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.55
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.53
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.52
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.51
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.5
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.48
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.4
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.39
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.37
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.34
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.24
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.24
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.19
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.17
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.13
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.1
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.08
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.01
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.95
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.94
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.92
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.91
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.89
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.83
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.8
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.76
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.76
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.7
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.64
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.64
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.62
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.25
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.22
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.19
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.1
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.42
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.09
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.98
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.18
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	89.96
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	89.86
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	88.98
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	86.9
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	84.55

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.4e-22  Score=190.07  Aligned_cols=368  Identities=13%  Similarity=0.036  Sum_probs=245.5

Q ss_pred             HHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 043068           99 TDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIK  175 (526)
Q Consensus        99 ~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  175 (526)
                      +..+.+.|++++|...+++..   +.++..+..+...|.+.|++++|+..|+++.+.++ .+..+|..+..++.+.|+++
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~~   84 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhcccc
Confidence            344445555555555554432   22344556666677777777777777777766653 34667777777777777777


Q ss_pred             HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043068          176 LAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMM  253 (526)
Q Consensus       176 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  253 (526)
                      +|++.+....+..  +.+..............+....+.......  ...................+....+...+.+..
T Consensus        85 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (388)
T d1w3ba_          85 EAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             ccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence            7777777777765  556666666666666666666655555443  122344445555566666777777777777766


Q ss_pred             HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043068          254 NRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKS  333 (526)
Q Consensus       254 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  333 (526)
                      ..... +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++....+.. +...
T Consensus       163 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~  239 (388)
T d1w3ba_         163 ETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVV  239 (388)
T ss_dssp             HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHH
T ss_pred             ccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHH
Confidence            65322 45666677777777788888888877776654 455667777777778888888888888777776543 5666


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh
Q 043068          334 YEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCM  413 (526)
Q Consensus       334 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~  413 (526)
                      +..+...+.+.|++++|+..|++..+.. +-+..++..+...+...|++++|.+.++...... +.+...+..+...+..
T Consensus       240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  317 (388)
T d1w3ba_         240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHH
Confidence            7777777778888888888888777652 2245667777777888888888888887766532 2344555555555544


Q ss_pred             cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhh
Q 043068          414 AKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNF  476 (526)
Q Consensus       414 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  476 (526)
                       .|++++|.+.+++.++..+. +..++..+..+|.+.|++++|+..|++.++.+|..++....
T Consensus       318 -~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~  378 (388)
T d1w3ba_         318 -QGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN  378 (388)
T ss_dssp             -TTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence             47888888888887765433 56677778888888888888888888888877766554333

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.5e-22  Score=191.16  Aligned_cols=378  Identities=16%  Similarity=0.127  Sum_probs=313.9

Q ss_pred             HHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHH
Q 043068           58 VTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYG  134 (526)
Q Consensus        58 l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~  134 (526)
                      +.....+.|++++|++.|+.+++..|+      +..++..++.++.+.|++++|...+++..   +.+...+..+...|.
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~   78 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQEPD------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK   78 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhh
Confidence            566777889999999999999887653      35578999999999999999999999754   445668889999999


Q ss_pred             cCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHH
Q 043068          135 DRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAK  214 (526)
Q Consensus       135 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  214 (526)
                      +.|++++|+..+........ .+..............+....+...........  .................+....+.
T Consensus        79 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  155 (388)
T d1w3ba_          79 ERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAK  155 (388)
T ss_dssp             HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHH
T ss_pred             hhcccccccccccccccccc-ccccccccccccccccccccccccccccccccc--cccccccccccccccccchhhhhH
Confidence            99999999999999987764 445556666666667777777777777776665  556667777777788888888888


Q ss_pred             HHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 043068          215 KVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGF  292 (526)
Q Consensus       215 ~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  292 (526)
                      ..+...  ..+.+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++..... 
T Consensus       156 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-  233 (388)
T d1w3ba_         156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-  233 (388)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-
T ss_pred             HHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-
Confidence            877766  22345678888999999999999999999999887433 67788999999999999999999999998876 


Q ss_pred             CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043068          293 KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAV  372 (526)
Q Consensus       293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  372 (526)
                      +.+...+..+...+.+.|++++|...|++..+..+. +..++..+...+...|++++|++.++...... +.+...+..+
T Consensus       234 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l  311 (388)
T d1w3ba_         234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNL  311 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHH
Confidence            567788888999999999999999999999987654 67889999999999999999999999987763 4467788899


Q ss_pred             HHHHHHcCCHHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 043068          373 FRILVENGELDRAILLLKQMPQMDCLPN-FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEG  451 (526)
Q Consensus       373 i~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  451 (526)
                      ...+.+.|++++|++.|++..+.  .|+ ...+..+...+.. .|++++|.+.++++++..+. +...|..|+.+|.+.|
T Consensus       312 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~l~P~-~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         312 ANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHT-TTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence            99999999999999999999874  465 4556666666655 59999999999999986544 6789999999999888


Q ss_pred             C
Q 043068          452 N  452 (526)
Q Consensus       452 ~  452 (526)
                      |
T Consensus       388 D  388 (388)
T d1w3ba_         388 D  388 (388)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.7e-14  Score=132.93  Aligned_cols=222  Identities=12%  Similarity=0.093  Sum_probs=138.5

Q ss_pred             HHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhh
Q 043068          133 YGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIEN  212 (526)
Q Consensus       133 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  212 (526)
                      +.+.|++++|+..|+++.+..+ .+..+|..+..++...|++++|...|.+.++..  |.+...|..++..|...|++++
T Consensus        29 ~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~  105 (323)
T d1fcha_          29 RLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQ  105 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--cccccccccccccccccccccc
Confidence            4444555555555555444432 234444444555555555555555555544443  3444445555555555555555


Q ss_pred             HHHHHHhC-CCCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHc
Q 043068          213 AKKVFDVM-TVKP----------------NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGC-RPNELTYNAMIYGLCIN  274 (526)
Q Consensus       213 A~~~~~~~-~~~p----------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~  274 (526)
                      |.+.+++. ...|                +.......+..+...+.+.+|.+.|.+..+... ..+..++..+...+...
T Consensus       106 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~  185 (323)
T d1fcha_         106 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS  185 (323)
T ss_dssp             HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred             cccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence            55544443 1111                111111222334455667788888887776532 23566777888888888


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043068          275 GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLL  354 (526)
Q Consensus       275 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  354 (526)
                      |++++|+..+++..... +.+..++..+...|.+.|++++|.+.|++.++..+. +..+|..+..+|.+.|++++|++.|
T Consensus       186 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~  263 (323)
T d1fcha_         186 GEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHF  263 (323)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999888887664 556778888888888899999999988888876543 6777888888888889999998888


Q ss_pred             HHHHH
Q 043068          355 KEMRA  359 (526)
Q Consensus       355 ~~m~~  359 (526)
                      ++.++
T Consensus       264 ~~al~  268 (323)
T d1fcha_         264 LEALN  268 (323)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.4e-14  Score=132.21  Aligned_cols=235  Identities=11%  Similarity=0.001  Sum_probs=152.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068          232 MINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGK  311 (526)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  311 (526)
                      ....+.+.|++++|+..|+++++.... +..+|..+..++...|++++|...+.++.+.. +.+...+..++..|...|+
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence            344455555555555555555554222 34455555555555555555555555555443 3344555555555555555


Q ss_pred             HHHHHHHHHHHHHcCCCC--------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHH
Q 043068          312 FDQAVGYLRNVMEANMNP--------------DVKSYEVVINGFCKIGKSDEAISLLKEMRARGL-KPTVFSFNAVFRIL  376 (526)
Q Consensus       312 ~~~A~~~~~~~~~~~~~~--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~  376 (526)
                      +++|.+.+++........              +.......+..+...+.+.+|...+.+..+... ..+...+..+...+
T Consensus       103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~  182 (323)
T d1fcha_         103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF  182 (323)
T ss_dssp             HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence            555555555554432110              011111222334455677888888888766432 23566788888999


Q ss_pred             HHcCCHHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 043068          377 VENGELDRAILLLKQMPQMDCLPN-FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVEN  455 (526)
Q Consensus       377 ~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  455 (526)
                      ...|++++|+..+++.....  |+ ...|..+...+... |++++|.+.++++++..+. +..+|..++.+|.+.|++++
T Consensus       183 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~  258 (323)
T d1fcha_         183 NLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANG-NQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHRE  258 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHhhhhcccccccccc--cccccchhhhhhccccc-ccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHHH
Confidence            99999999999999988743  44 55666666666654 9999999999999987544 67889999999999999999


Q ss_pred             HHHHHHHHHHcCCCccc
Q 043068          456 VMQIAHEMVTKKGRLLK  472 (526)
Q Consensus       456 a~~~~~~m~~~~~~~~~  472 (526)
                      |++.|++.++..+..+.
T Consensus       259 A~~~~~~al~l~p~~~~  275 (323)
T d1fcha_         259 AVEHFLEALNMQRKSRG  275 (323)
T ss_dssp             HHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHhCCcChh
Confidence            99999999987665443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.5e-10  Score=103.83  Aligned_cols=212  Identities=8%  Similarity=0.033  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVN-SIKLAEEFFHQIVKENVVPPDVSTYTTMIRG  203 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~  203 (526)
                      .++.+...+.+.+.+++|+++++++...++ .+..+|+....++...| ++++|++.++..++..  |.+..+|+.+...
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~~~~~  121 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--HhhhhHHHHHhHH
Confidence            345566667777778888888888877764 45667777777777765 4788888888877776  6777788888888


Q ss_pred             HHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-----
Q 043068          204 YCKMGMIENAKKVFDVM-TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGR-----  276 (526)
Q Consensus       204 ~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----  276 (526)
                      +.+.|++++|++.++++ .. +.+...|..+...+.+.|++++|++.|+++++..+. +...|+.+...+.+.+.     
T Consensus       122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~  200 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA  200 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence            88888888888888776 22 345777777888888888888888888888776433 56667666655555544     


Q ss_pred             -HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 043068          277 -VDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNP-DVKSYEVVINGFC  342 (526)
Q Consensus       277 -~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~  342 (526)
                       +++|+..+..+.+.. +.+...|..+...+. ....+++.+.++...+....+ +...+..++..|.
T Consensus       201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         201 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             hhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence             566777777766654 445566655554443 333566666666665543322 3344445555443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.5e-10  Score=104.84  Aligned_cols=216  Identities=9%  Similarity=0.117  Sum_probs=164.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043068          226 LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCING-RVDEAKMLMAKMRLNGFKDNVSTHKSMLK  304 (526)
Q Consensus       226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~  304 (526)
                      ...|+.+...+.+.+.+++|+++++++++.... +...|+....++...| ++++|+..++...+.. +-+..+|..+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence            446777777888889999999999999887433 5667888888887766 4899999999988775 667888888899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---
Q 043068          305 GLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGE---  381 (526)
Q Consensus       305 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---  381 (526)
                      .+.+.|++++|+..++++++..+. +...|..+...+...|++++|++.++++.+.+.. +...|+.+...+.+.+.   
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence            999999999999999999988655 7888999999999999999999999999886422 56677777766666655   


Q ss_pred             ---HHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 043068          382 ---LDRAILLLKQMPQMDCLPN-FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNL-DFTMYSCLLKGYCE  449 (526)
Q Consensus       382 ---~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~  449 (526)
                         +++|++.+.++.+.  .|+ ...|..+. .++.. ...+++.+.++...+....+ +...+..++..|..
T Consensus       199 ~~~~~~ai~~~~~al~~--~P~~~~~~~~l~-~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~  267 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKL--VPHNESAWNYLK-GILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED  267 (315)
T ss_dssp             HHHHHHHHHHHHHHHHH--STTCHHHHHHHH-HHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhHHhHHHHHHHHHh--CCCchHHHHHHH-HHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence               57888888888774  354 44555444 34444 55678888888887754433 45566777777754

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=2.4e-09  Score=99.75  Aligned_cols=164  Identities=13%  Similarity=0.090  Sum_probs=74.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC----CHHHHH
Q 043068          266 AMIYGLCINGRVDEAKMLMAKMRLNG----FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN--MNP----DVKSYE  335 (526)
Q Consensus       266 ~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~----~~~~~~  335 (526)
                      .+...+...|+++.+...+.......    .......+......+...++...+...+.+.....  ...    ....+.
T Consensus       138 ~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~  217 (366)
T d1hz4a_         138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK  217 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred             HHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHH
Confidence            34444555555555555555444321    11112233334444445555555555544433210  000    112234


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHccc----CCCCcCHH-HHHHH
Q 043068          336 VVINGFCKIGKSDEAISLLKEMRARGLKP---TVFSFNAVFRILVENGELDRAILLLKQMPQ----MDCLPNFV-SYNTI  407 (526)
Q Consensus       336 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~-~~~~l  407 (526)
                      .+...+...|++++|...+++........   ....+..+..++...|++++|...++++..    .+..|+.. .+..+
T Consensus       218 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  297 (366)
T d1hz4a_         218 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL  297 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHH
Confidence            44445556666666666665554332111   122344455566666666666666665542    22333322 23333


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHH
Q 043068          408 ICGLCMAKGRMQDVEDLVDRMIR  430 (526)
Q Consensus       408 l~~~~~~~g~~~~a~~~~~~~~~  430 (526)
                      -..+... |++++|.+.+++.++
T Consensus       298 a~~~~~~-g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         298 NQLYWQA-GRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHH-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHC-CCHHHHHHHHHHHHH
Confidence            3333333 666666666666544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=1.2e-09  Score=101.83  Aligned_cols=268  Identities=12%  Similarity=0.059  Sum_probs=189.3

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----CHHHHH
Q 043068          127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGAC----LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPP----DVSTYT  198 (526)
Q Consensus       127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~  198 (526)
                      ......+...|++++|++++++.....+..+    ..++..+..++...|++++|++.|++..+...-.+    ...++.
T Consensus        16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   95 (366)
T d1hz4a_          16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   95 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            3445667788999999999988876553222    24667777888888999999999888765321111    234566


Q ss_pred             HHHHHHHHcCChhhHHHHHHhC-------CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHH
Q 043068          199 TMIRGYCKMGMIENAKKVFDVM-------TVK--P-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGC----RPNELTY  264 (526)
Q Consensus       199 ~li~~~~~~g~~~~A~~~~~~~-------~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~  264 (526)
                      .+...+...|++..+...+.+.       ...  + ....+..+...+...|+++.+...+.+......    ......+
T Consensus        96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  175 (366)
T d1hz4a_          96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  175 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence            6777888889988888877664       111  1 123556677888899999999999988876422    2234556


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC--CHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHH
Q 043068          265 NAMIYGLCINGRVDEAKMLMAKMRLN----GFKD--NVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNP---DVKSYE  335 (526)
Q Consensus       265 ~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~  335 (526)
                      ......+...++...+...+.+....    +..+  ....+......+...|++++|...++...+.....   ....+.
T Consensus       176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  255 (366)
T d1hz4a_         176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  255 (366)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            66677788889999988888776542    1111  12345566777888999999999998876653322   245566


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068          336 VVINGFCKIGKSDEAISLLKEMRA----RGLKPT-VFSFNAVFRILVENGELDRAILLLKQMPQ  394 (526)
Q Consensus       336 ~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~  394 (526)
                      .+...+...|++++|...+++...    .+..|+ ...+..+...|.+.|++++|.+.+++..+
T Consensus       256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            788899999999999999988753    233343 34677788899999999999999988764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=4.1e-09  Score=96.35  Aligned_cols=196  Identities=10%  Similarity=-0.018  Sum_probs=152.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043068          275 GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLL  354 (526)
Q Consensus       275 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  354 (526)
                      +..++|..+|++..+...+.+...+...+..+.+.|+++.|..+|+++++.........|...+..+.+.|+.+.|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34578888999888765566677888888999999999999999999988765545667899999999999999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC
Q 043068          355 KEMRARGLKPTVFSFNAVFRI-LVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGH  433 (526)
Q Consensus       355 ~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~  433 (526)
                      +++.+.+.. +...|...... +...|+.+.|..+|+.+.+.. +.+...|...+..+.. .|+.+.|..+|++.++...
T Consensus       158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~-~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSH-LNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCC
Confidence            999876432 33444444333 334689999999999988742 3446677777777655 4999999999999988643


Q ss_pred             -CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccch
Q 043068          434 -NL--DFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKL  473 (526)
Q Consensus       434 -~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  473 (526)
                       .|  ....|...+..-...|+.+.+..+++++.+..+..+..
T Consensus       235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~  277 (308)
T d2onda1         235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG  277 (308)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccccc
Confidence             33  24688888888888999999999999999888766543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=9.5e-10  Score=97.86  Aligned_cols=222  Identities=12%  Similarity=-0.045  Sum_probs=136.7

Q ss_pred             CHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHH
Q 043068          241 ELEEAKKCMNEMMNRGCRP---NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVG  317 (526)
Q Consensus       241 ~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  317 (526)
                      +.+.++.-+++........   ...+|..+..+|.+.|++++|+..|++..+.. +.+..+|..+..+|.+.|++++|+.
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence            3455556666665542211   12356666777888888888888888887765 5667788888888888888888888


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCC
Q 043068          318 YLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDC  397 (526)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  397 (526)
                      .|+++.+..+. +..++..+...|...|++++|++.|++..+.. +.+......+..++.+.+..+.+..+........ 
T Consensus        93 ~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  169 (259)
T d1xnfa_          93 AFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-  169 (259)
T ss_dssp             HHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-
T ss_pred             hhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc-
Confidence            88888877544 55677777888888888888888888877653 1233333344444555555555555444444321 


Q ss_pred             CcCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc
Q 043068          398 LPNFVSYNTIICGLCMA---KGRMQDVEDLVDRMIRSGHNL-DFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRL  470 (526)
Q Consensus       398 ~p~~~~~~~ll~~~~~~---~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~  470 (526)
                       ++...+.. +..+...   .+..+.+...+......  .| ...+|..+...|...|++++|.+.|++.++.+|+.
T Consensus       170 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  242 (259)
T d1xnfa_         170 -KEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN  242 (259)
T ss_dssp             -CCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             -hhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence             22212221 1121111   01122222222222211  11 23467788999999999999999999999988743

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=9.6e-09  Score=93.83  Aligned_cols=180  Identities=8%  Similarity=0.037  Sum_probs=77.7

Q ss_pred             hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043068          175 KLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPN--LLAYNTMINGFCKKGELEEAKKCMNE  251 (526)
Q Consensus       175 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~  251 (526)
                      ++|..+|++.++.. .|.+...|...+..+.+.|++++|..+|+++ ...|.  ...|...+....+.|+.+.|.++|++
T Consensus        81 ~~a~~i~~ral~~~-~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~  159 (308)
T d2onda1          81 DEAANIYERAISTL-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHTTT-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            44555555555432 2334444555555555555555555555544 22221  22344445555555555555555555


Q ss_pred             HHHcCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC
Q 043068          252 MMNRGCRPNELTYNAMIYG-LCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANM-NP  329 (526)
Q Consensus       252 m~~~g~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~  329 (526)
                      +.+.+.. +...|...... +...|+.+.|..+|+.+.+.. +.+...+...+..+.+.|+++.|..+|++...... .|
T Consensus       160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            5443222 22222222211 122344444444444444332 33344444444444444444444444444444321 11


Q ss_pred             --CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068          330 --DVKSYEVVINGFCKIGKSDEAISLLKEM  357 (526)
Q Consensus       330 --~~~~~~~li~~~~~~g~~~~A~~~~~~m  357 (526)
                        ....|...+..-...|+.+.+.++++++
T Consensus       238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~  267 (308)
T d2onda1         238 EKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence              1233444444444444444444444444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=1.1e-09  Score=97.40  Aligned_cols=93  Identities=17%  Similarity=0.021  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY  204 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~  204 (526)
                      ++..+...|.+.|++++|++.|++.....+ .+..+|+.+..++.+.|++++|++.|+++++..  |.+..++..+..++
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--hhhhhhHHHHHHHH
Confidence            344555666666666666666666665553 345666666666666666666666666666654  44555666666666


Q ss_pred             HHcCChhhHHHHHHhC
Q 043068          205 CKMGMIENAKKVFDVM  220 (526)
Q Consensus       205 ~~~g~~~~A~~~~~~~  220 (526)
                      ...|++++|.+.|++.
T Consensus       116 ~~~g~~~~A~~~~~~a  131 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAF  131 (259)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHH
Confidence            6666666666666554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=5.9e-10  Score=103.47  Aligned_cols=52  Identities=4%  Similarity=-0.104  Sum_probs=26.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          416 GRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       416 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                      |+.++|...+.+..+..+. +..+|..++.+|.+.|+.++|.+.+++.++.+|
T Consensus       256 ~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP  307 (334)
T d1dcea1         256 QSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVDP  307 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred             hhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence            4555555555554443222 334455555555555555555555555555544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=4.6e-10  Score=104.27  Aligned_cols=259  Identities=8%  Similarity=0.002  Sum_probs=112.4

Q ss_pred             cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 043068           65 QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIF  144 (526)
Q Consensus        65 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  144 (526)
                      ....++|+..++.++..+|+.      ..+|+.....+...+.                     +...+...|++++|+.
T Consensus        42 ~~~~~~al~~~~~~l~~~P~~------~~a~~~r~~~l~~l~~---------------------~~~~~~~~~~~~~al~   94 (334)
T d1dcea1          42 GELDESVLELTSQILGANPDF------ATLWNCRREVLQHLET---------------------EKSPEESAALVKAELG   94 (334)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHT---------------------TSCHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHhh---------------------hcchHHHHHHHHHHHH
Confidence            344578999999998776632      2334443333221110                     0011122333444444


Q ss_pred             HHHHHHhcCCCCChhhHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCCHHHHHH-HHHHHHHcCChhhHHHHHHhC-
Q 043068          145 WFHQAKQIENGACLYSYNSLLGVLVRVNS--IKLAEEFFHQIVKENVVPPDVSTYTT-MIRGYCKMGMIENAKKVFDVM-  220 (526)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~-  220 (526)
                      +++.....++ .+...|..+..++...++  +++|...+..+++..  +++...+.. ....+...+..++|+..++.+ 
T Consensus        95 ~~~~~l~~~p-k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i  171 (334)
T d1dcea1          95 FLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI  171 (334)
T ss_dssp             HHHHHHHHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT
T ss_pred             HHHHHHHhCC-CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC--chhhhhhhhHHHHHHHhccccHHHHHHHHHHH
Confidence            4444444332 233344444444433332  444444444444443  333333322 223333344444444444443 


Q ss_pred             CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhH
Q 043068          221 TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTH  299 (526)
Q Consensus       221 ~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  299 (526)
                      .. +-+...|+.+...+.+.|++++|...+++..+.  .|+   ...+...+...+..+++...+....... +++...+
T Consensus       172 ~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~  245 (334)
T d1dcea1         172 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRC  245 (334)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSC
T ss_pred             HcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHH
Confidence            11 123444444444444444444443333322221  000   0111222333344444444444444333 3333344


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068          300 KSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR  360 (526)
Q Consensus       300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  360 (526)
                      ..++..+...++.++|...+.+..+.++. +..++..+...|...|++++|++.+++..+.
T Consensus       246 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         246 ELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            44445555555555555555555444322 3344455555555555555555555555543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=1.4e-06  Score=78.31  Aligned_cols=54  Identities=13%  Similarity=0.029  Sum_probs=30.6

Q ss_pred             HHHHHHcCChhhHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043068          201 IRGYCKMGMIENAKKVFDVM-------TVKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMN  254 (526)
Q Consensus       201 i~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  254 (526)
                      ...|...|++++|.+.|.+.       +..+ -..+|..+..+|.+.|++++|.+.+++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~  105 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ  105 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence            44566666666666666654       1111 123556666666666666666666665443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=9.8e-07  Score=73.69  Aligned_cols=124  Identities=10%  Similarity=-0.027  Sum_probs=78.4

Q ss_pred             HHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043068          201 IRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEA  280 (526)
Q Consensus       201 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  280 (526)
                      ...+...|++++|++.|+++. +|+...|..+..+|.+.|++++|++.|++.++.... +...|..+..++.+.|++++|
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHH
Confidence            444566777777777777764 456667777777777777777777777777776433 566677777777777777777


Q ss_pred             HHHHHHHHHcCCCC---------------CHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043068          281 KMLMAKMRLNGFKD---------------NVSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN  326 (526)
Q Consensus       281 ~~~~~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  326 (526)
                      +..|++........               ...++..+..++.+.|++++|.+.+....+..
T Consensus        90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            77777765421000               01234445555666666666666666555543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.6e-06  Score=72.35  Aligned_cols=123  Identities=11%  Similarity=-0.042  Sum_probs=88.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCH
Q 043068          233 INGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKF  312 (526)
Q Consensus       233 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  312 (526)
                      ...+...|+++.|++.|.++    .+|+..+|..+..+|...|++++|++.|++..+.. +.+...|..+..+|.+.|++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence            55567788888888888764    24567777788888888888888888888888765 56677888888888888888


Q ss_pred             HHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068          313 DQAVGYLRNVMEANMN--------------P-DVKSYEVVINGFCKIGKSDEAISLLKEMRAR  360 (526)
Q Consensus       313 ~~A~~~~~~~~~~~~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  360 (526)
                      ++|+..|++.+.....              . ...++..+..++.+.|++++|.+.+....+.
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            8888888877653111              0 1234555666777777777777777776655

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=1.2e-06  Score=78.75  Aligned_cols=125  Identities=11%  Similarity=0.029  Sum_probs=67.5

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHc----CCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-------C-CCCCHHHHHHH
Q 043068          165 LGVLVRVNSIKLAEEFFHQIVKE----NVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-------T-VKPNLLAYNTM  232 (526)
Q Consensus       165 i~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~l  232 (526)
                      ...|...|++++|.+.|.+..+.    +..+.-..+|..+..+|.+.|++++|.+.+++.       + .......+..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            44566667777777777666542    100112356777777777788888777776654       1 00112334445


Q ss_pred             HHHHHh-cCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068          233 INGFCK-KGELEEAKKCMNEMMNR----GCRP-NELTYNAMIYGLCINGRVDEAKMLMAKMRL  289 (526)
Q Consensus       233 i~~~~~-~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  289 (526)
                      ...|.. .|++++|++.|++..+.    +..+ -..++..+...+...|++++|+..|+++..
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~  186 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence            555533 46777777776665432    1110 022344555555666666666666655544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.7e-06  Score=64.46  Aligned_cols=90  Identities=16%  Similarity=0.130  Sum_probs=40.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHH
Q 043068          234 NGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFD  313 (526)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  313 (526)
                      ..+.+.|++++|+..|++.++.... +...|..+..++.+.|++++|+..++...+.. +.+...|..+..++...|+++
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~   88 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE   88 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence            3344444444444444444443221 33444444444444444444444444444433 334444444444444444444


Q ss_pred             HHHHHHHHHHHc
Q 043068          314 QAVGYLRNVMEA  325 (526)
Q Consensus       314 ~A~~~~~~~~~~  325 (526)
                      +|+..|++..+.
T Consensus        89 ~A~~~~~~a~~~  100 (117)
T d1elwa_          89 EAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            444444444443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.55  E-value=9.2e-05  Score=64.84  Aligned_cols=223  Identities=9%  Similarity=-0.040  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCCHHHHH
Q 043068          123 DFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVR----VNSIKLAEEFFHQIVKENVVPPDVSTYT  198 (526)
Q Consensus       123 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~  198 (526)
                      |..+..|...+...|++++|+++|++..+.|   +..++..|...|..    ..++..|...+....+.+    +.....
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~----~~~a~~   74 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCH   74 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----ccchhh
Confidence            3444455555566667777777776665544   34445455555554    345666666666665554    334444


Q ss_pred             HHHHHHHH----cCChhhHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043068          199 TMIRGYCK----MGMIENAKKVFDVMTVKPNLLAYNTMINGFCK----KGELEEAKKCMNEMMNRGCRPNELTYNAMIYG  270 (526)
Q Consensus       199 ~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  270 (526)
                      .+...+..    ..+.+.|...++.............+...+..    ......+...+.+....+   +...+..|...
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~  151 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL  151 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhh
Confidence            44444433    23445555555544111122222222222222    234455555555544432   44555555555


Q ss_pred             HHH----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043068          271 LCI----NGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV----VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC  342 (526)
Q Consensus       271 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~  342 (526)
                      +..    ..+...+..+++...+.|   +......+...|..    ..+.++|+.+|++..+.|   +...+..|...|.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~  225 (265)
T d1ouva_         152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY  225 (265)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             hccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHH
Confidence            554    344555566665555433   34444444444444    446666777776666654   3445555555554


Q ss_pred             h----cCChhHHHHHHHHHHHCC
Q 043068          343 K----IGKSDEAISLLKEMRARG  361 (526)
Q Consensus       343 ~----~g~~~~A~~~~~~m~~~~  361 (526)
                      +    ..+.++|.+.|++....|
T Consensus       226 ~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         226 NGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             cCCCCccCHHHHHHHHHHHHHCc
Confidence            3    225666666666665554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.53  E-value=0.0001  Score=64.55  Aligned_cols=95  Identities=8%  Similarity=0.010  Sum_probs=54.2

Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCChhhHHHHHHhCCCCCCHHHHHHHH
Q 043068          158 LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK----MGMIENAKKVFDVMTVKPNLLAYNTMI  233 (526)
Q Consensus       158 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~li  233 (526)
                      +..+..|...+.+.+++++|++.|++..+.|    +...+..|...|..    ..+...|..+++.....-+......+.
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccc
Confidence            3455556666667777777777777777665    55666666666665    345566666665542122333344444


Q ss_pred             HHHHh----cCCHHHHHHHHHHHHHcC
Q 043068          234 NGFCK----KGELEEAKKCMNEMMNRG  256 (526)
Q Consensus       234 ~~~~~----~g~~~~A~~~~~~m~~~g  256 (526)
                      ..+..    ..+.+.|...++...+.|
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g  104 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLK  104 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             cccccccccchhhHHHHHHHhhhhhhh
Confidence            33332    345566666666655544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.2e-06  Score=70.63  Aligned_cols=89  Identities=12%  Similarity=0.135  Sum_probs=62.8

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068          129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG  208 (526)
Q Consensus       129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  208 (526)
                      ....|.+.|++++|+..|+++.+.++ .+...|..+..++...|++++|++.|+..++..  |.+..+|..++.++...|
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHc--ccchHHHHHHHHHHHHcC
Confidence            34556677777777777777776664 456677777777777777777777777777765  666677777777777777


Q ss_pred             ChhhHHHHHHhC
Q 043068          209 MIENAKKVFDVM  220 (526)
Q Consensus       209 ~~~~A~~~~~~~  220 (526)
                      ++++|.+.+++.
T Consensus        93 ~~~eA~~~~~~a  104 (159)
T d1a17a_          93 KFRAALRDYETV  104 (159)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            777777777665

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.9e-06  Score=67.56  Aligned_cols=93  Identities=15%  Similarity=0.088  Sum_probs=54.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068          232 MINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGK  311 (526)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  311 (526)
                      ..+.|.+.|++++|+..|++.++.... +...|..+..+|...|++++|+..|+++.+.. +.+..+|..++.++...|+
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence            444555666666666666666655322 45555566666666666666666666665544 4445556666666666666


Q ss_pred             HHHHHHHHHHHHHcC
Q 043068          312 FDQAVGYLRNVMEAN  326 (526)
Q Consensus       312 ~~~A~~~~~~~~~~~  326 (526)
                      +++|...+++.....
T Consensus        94 ~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          94 FRAALRDYETVVKVK  108 (159)
T ss_dssp             HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcC
Confidence            666666666665553

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.9e-06  Score=65.36  Aligned_cols=88  Identities=15%  Similarity=0.100  Sum_probs=49.5

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 043068          130 IKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGM  209 (526)
Q Consensus       130 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  209 (526)
                      ...+.+.|++++|+..|+++....+ .+...|..+..++.+.|++++|+..+...++.+  |.+...|..+..++...|+
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCC-cchhhhhcccccccccccccccchhhhhHHHhc--cchhhHHHHHHHHHHHccC
Confidence            3445555556666666655555443 345555555555555566666666655555554  5555555555555555555


Q ss_pred             hhhHHHHHHhC
Q 043068          210 IENAKKVFDVM  220 (526)
Q Consensus       210 ~~~A~~~~~~~  220 (526)
                      +++|+..|++.
T Consensus        87 ~~~A~~~~~~a   97 (117)
T d1elwa_          87 FEEAKRTYEEG   97 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555554

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.48  E-value=0.0004  Score=62.27  Aligned_cols=284  Identities=10%  Similarity=0.030  Sum_probs=155.3

Q ss_pred             ChHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043068           54 GSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAY  133 (526)
Q Consensus        54 ~~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~  133 (526)
                      ....++..+...|.++.|..+|..+..              |..++..+.+.++++.|.+.+++..  ++.+|..+...+
T Consensus        16 d~~~i~~~c~~~~lye~A~~lY~~~~d--------------~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l   79 (336)
T d1b89a_          16 HIQQVGDRCYDEKMYDAAKLLYNNVSN--------------FGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFAC   79 (336)
T ss_dssp             -------------CTTTHHHHHHHTTC--------------HHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHhCCC--------------HHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHH
Confidence            445677788889999999999986532              7788899999999999999998764  566888888888


Q ss_pred             HcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhH
Q 043068          134 GDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENA  213 (526)
Q Consensus       134 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  213 (526)
                      .+......|.     +.......+......++..|-..|.+++...+++......  +.+...++.++..|++.+ .++.
T Consensus        80 ~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~--~~~~~~~~~L~~lyak~~-~~kl  151 (336)
T d1b89a_          80 VDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFK-PQKM  151 (336)
T ss_dssp             HHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTC-HHHH
T ss_pred             HhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC--ccchHHHHHHHHHHHHhC-hHHH
Confidence            8887765542     2222233445556678899999999999999999887654  678888999999999865 3455


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043068          214 KKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNR--------GCRPNELTYNAMIYGLCINGRVDEAKMLMA  285 (526)
Q Consensus       214 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~  285 (526)
                      .+.+......-|.   ..++..|-+.+-++++.-++.++...        ...++..-....+..+.+.++.+...++. 
T Consensus       152 ~e~l~~~s~~y~~---~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i-  227 (336)
T d1b89a_         152 REHLELFWSRVNI---PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAI-  227 (336)
T ss_dssp             HHHHHHHSTTSCH---HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHH-
T ss_pred             HHHHHhccccCCH---HHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHH-
Confidence            5555543211111   12233333333333333333222110        00112111222233333333333333322 


Q ss_pred             HHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 043068          286 KMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPT  365 (526)
Q Consensus       286 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  365 (526)
                                        ..|... +.+-...++..+... +  |   -..++..+.+.++..-....++.....|   +
T Consensus       228 ------------------~~yL~~-~p~~i~~lL~~v~~~-~--d---~~r~V~~~~k~~~l~li~p~Le~v~~~n---~  279 (336)
T d1b89a_         228 ------------------QFYLEF-KPLLLNDLLMVLSPR-L--D---HTRAVNYFSKVKQLPLVKPYLRSVQNHN---N  279 (336)
T ss_dssp             ------------------HHHHHH-CGGGHHHHHHHHGGG-C--C---HHHHHHHHHHTTCTTTTHHHHHHHHTTC---C
T ss_pred             ------------------HHHHHc-CHHHHHHHHHHhccC-C--C---HHHHHHHHHhcCCcHHHHHHHHHHHHcC---h
Confidence                              222221 112222222222211 1  1   1234444555666666666666655544   3


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q 043068          366 VFSFNAVFRILVENGELDRAILLLKQMP  393 (526)
Q Consensus       366 ~~~~~~li~~~~~~g~~~~a~~~~~~~~  393 (526)
                      ..+.+++...|...++++.-.+..+...
T Consensus       280 ~~vn~al~~lyie~~d~~~l~~~i~~~~  307 (336)
T d1b89a_         280 KSVNESLNNLFITEEDYQALRTSIDAYD  307 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence            4577888888888888766555554433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=2.9e-06  Score=71.25  Aligned_cols=97  Identities=12%  Similarity=0.073  Sum_probs=42.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043068          225 NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLK  304 (526)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  304 (526)
                      +...+......|.+.|++++|+..|++.++.... +...|..+..+|.+.|++++|+..|+++.+.. +-+..+|..+..
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~   80 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHH
Confidence            3344444444444444444444444444443221 34444444444444444444444444444322 223334444444


Q ss_pred             HHHHcCCHHHHHHHHHHHH
Q 043068          305 GLCVVGKFDQAVGYLRNVM  323 (526)
Q Consensus       305 ~~~~~g~~~~A~~~~~~~~  323 (526)
                      +|.+.|++++|+..|++..
T Consensus        81 ~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHH
Confidence            4444444444444444433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=2.9e-06  Score=71.31  Aligned_cols=99  Identities=15%  Similarity=0.050  Sum_probs=74.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043068          259 PNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVI  338 (526)
Q Consensus       259 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li  338 (526)
                      |+...+......+.+.|++++|+..|+++.+.. +.+...|..+..+|.+.|++++|+..|++.++..+. +..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence            556666667777888888888888888777665 566777777888888888888888888887776443 566777788


Q ss_pred             HHHHhcCChhHHHHHHHHHHH
Q 043068          339 NGFCKIGKSDEAISLLKEMRA  359 (526)
Q Consensus       339 ~~~~~~g~~~~A~~~~~~m~~  359 (526)
                      .+|...|++++|+..|++..+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            888888888888888877654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.37  E-value=1.4e-06  Score=65.42  Aligned_cols=88  Identities=14%  Similarity=-0.022  Sum_probs=61.2

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068          129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG  208 (526)
Q Consensus       129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  208 (526)
                      +...+.+.|++++|+..|++.....+ .+..+|..+..++.+.|++++|+..|++.++..  |.+..+|..+..+|...|
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhccccc-ccchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHCC
Confidence            34456667777777777777766653 356677777777777777777777777777765  666777777777777777


Q ss_pred             ChhhHHHHHHh
Q 043068          209 MIENAKKVFDV  219 (526)
Q Consensus       209 ~~~~A~~~~~~  219 (526)
                      ++++|.+.+++
T Consensus        99 ~~~~A~~~l~~  109 (112)
T d1hxia_          99 NANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            77777777664

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.3e-06  Score=66.51  Aligned_cols=108  Identities=11%  Similarity=0.057  Sum_probs=78.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 043068          370 NAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMA--KGRMQDVEDLVDRMIRSGHNLD-FTMYSCLLKG  446 (526)
Q Consensus       370 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~  446 (526)
                      ..++..+...+++++|.+.|++....+ +.+..++..+..++.+.  .++.++|..+++++++.+..|+ ..+|..|..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            456777888888899999998888744 23455666666565542  2455678889998887655444 2478888999


Q ss_pred             HHhCCCHHHHHHHHHHHHHcCCCccchhhhHH
Q 043068          447 YCEEGNVENVMQIAHEMVTKKGRLLKLKNFLT  478 (526)
Q Consensus       447 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~  478 (526)
                      |.+.|++++|++.|+++++.+|..+...+...
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~  113 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELER  113 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            99999999999999999999987776555543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.24  E-value=8.2e-06  Score=61.09  Aligned_cols=58  Identities=12%  Similarity=0.037  Sum_probs=21.5

Q ss_pred             HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043068          297 STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLK  355 (526)
Q Consensus       297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  355 (526)
                      .+|..+..++.+.|++++|+..|++.++..+. +...|..+...|...|++++|++.++
T Consensus        51 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~~~A~~~l~  108 (112)
T d1hxia_          51 EAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAALASLR  108 (112)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCHHHHHHHHH
Confidence            33333333333333333333333333333222 23333333333333333333333333

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.7e-07  Score=91.40  Aligned_cols=227  Identities=7%  Similarity=-0.097  Sum_probs=122.1

Q ss_pred             HHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHH-HHHHHHHHcCCCHHHHHHHHHH
Q 043068           70 HALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFI-SKLIKAYGDRGNVKAAIFWFHQ  148 (526)
Q Consensus        70 ~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~  148 (526)
                      +|.++|+++.+..|+....      +..++.++...+++++|   +++....++..- ..-+........+..+++.++.
T Consensus         4 eA~q~~~qA~~l~p~~a~a------~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~   74 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDS------KLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQG   74 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCS------SSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHH------HhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            6888888888665543222      33344455555556554   444333333211 1111111111224566777776


Q ss_pred             HHhcCCCCChhhHHHHHH--HHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCC
Q 043068          149 AKQIENGACLYSYNSLLG--VLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPN  225 (526)
Q Consensus       149 ~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~  225 (526)
                      ..+....++..-....+.  .....+.++.|+..+....+..  +++...+..+...+.+.|+.++|...+... ...| 
T Consensus        75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-  151 (497)
T d1ya0a1          75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD--LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-  151 (497)
T ss_dssp             HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHHHH-
T ss_pred             hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH-
Confidence            665443333322222221  2223455666666665554443  567778888899999999999988777654 1111 


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043068          226 LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKG  305 (526)
Q Consensus       226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  305 (526)
                      ..++..+...+...|++++|+..|++..+.... +...|+.|...+...|+..+|...|.+..... +|-..++..+...
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~  229 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence            346777889999999999999999999987433 66899999999999999999999999998776 6778888888888


Q ss_pred             HHHcC
Q 043068          306 LCVVG  310 (526)
Q Consensus       306 ~~~~g  310 (526)
                      +.+..
T Consensus       230 ~~~~~  234 (497)
T d1ya0a1         230 LSKAL  234 (497)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            76544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=5.3e-05  Score=61.38  Aligned_cols=96  Identities=10%  Similarity=-0.032  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 043068          229 YNTMINGFCKKGELEEAKKCMNEMMNRGCR-PN-------------ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKD  294 (526)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  294 (526)
                      +......+.+.|++++|+..|++.++.-.. +.             ..+|+.+..+|.+.|++++|+..++..++.. |.
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~   94 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SN   94 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-cc
Confidence            334455566666666666666665543110 00             1223334444445555555555555444443 33


Q ss_pred             CHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068          295 NVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA  325 (526)
Q Consensus       295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  325 (526)
                      ++.++..+..+|...|++++|...|++..+.
T Consensus        95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          95 NEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            4444444455555555555555555554444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=8.3e-06  Score=61.94  Aligned_cols=38  Identities=13%  Similarity=-0.044  Sum_probs=14.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043068          269 YGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC  307 (526)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  307 (526)
                      +.+...+++++|++.|++..+.+ +.+..++..+..++.
T Consensus         7 n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~   44 (122)
T d1nzna_           7 NELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLV   44 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHT
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence            33333444444444444443333 333333333443333

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.13  E-value=0.0023  Score=57.20  Aligned_cols=273  Identities=11%  Similarity=0.092  Sum_probs=116.3

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 043068          128 KLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKM  207 (526)
Q Consensus       128 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  207 (526)
                      .++..|.+.|.++.|..+|..+.         -|..++..+.+.++++.|.+.+...   +    +..+|..+...+.+.
T Consensus        19 ~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~---~----~~~~~k~~~~~l~~~   82 (336)
T d1b89a_          19 QVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA---N----STRTWKEVCFACVDG   82 (336)
T ss_dssp             ----------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH---T----CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc---C----CHHHHHHHHHHHHhC
Confidence            34444555555555555555332         2444555555555555555544322   1    344555555555554


Q ss_pred             CChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043068          208 GMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKM  287 (526)
Q Consensus       208 g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~  287 (526)
                      ....-|.-.  ......+......++..|-..|.+++...+++..... -..+...++.++..|++.+ .++..+.+...
T Consensus        83 ~e~~la~i~--~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~  158 (336)
T d1b89a_          83 KEFRLAQMC--GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREHLELF  158 (336)
T ss_dssp             TCHHHHHHT--TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred             cHHHHHHHH--HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHHHHHhc
Confidence            443332111  1111223333445555566666666666666555432 1234445555555555543 22222222211


Q ss_pred             HHcCCCCCH----------HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068          288 RLNGFKDNV----------STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEM  357 (526)
Q Consensus       288 ~~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  357 (526)
                         +...+.          ..|.-++..|.+.|+++.|..++   .++  .++..-....+..+.+..+++...++....
T Consensus       159 ---s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~y  230 (336)
T d1b89a_         159 ---WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFY  230 (336)
T ss_dssp             ---STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHH
T ss_pred             ---cccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHHHHHHH
Confidence               101110          01222333344444444443322   221  112222233444455555555444444433


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH
Q 043068          358 RARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDF  437 (526)
Q Consensus       358 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~  437 (526)
                      .+.  .|  ...+.++......-+..+..+.++                      + .+++.-...+++...+.|   +.
T Consensus       231 L~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~----------------------k-~~~l~li~p~Le~v~~~n---~~  280 (336)
T d1b89a_         231 LEF--KP--LLLNDLLMVLSPRLDHTRAVNYFS----------------------K-VKQLPLVKPYLRSVQNHN---NK  280 (336)
T ss_dssp             HHH--CG--GGHHHHHHHHGGGCCHHHHHHHHH----------------------H-TTCTTTTHHHHHHHHTTC---CH
T ss_pred             HHc--CH--HHHHHHHHHhccCCCHHHHHHHHH----------------------h-cCCcHHHHHHHHHHHHcC---hH
Confidence            332  12  222333333333333333333222                      2 255666666666655544   34


Q ss_pred             HHHHHHHHHHHhCCCHHHHHH
Q 043068          438 TMYSCLLKGYCEEGNVENVMQ  458 (526)
Q Consensus       438 ~~~~~l~~~~~~~g~~~~a~~  458 (526)
                      .+.++|...|...++++.-.+
T Consensus       281 ~vn~al~~lyie~~d~~~l~~  301 (336)
T d1b89a_         281 SVNESLNNLFITEEDYQALRT  301 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCcchhHHHHH
Confidence            678888888888888655333

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.8e-06  Score=81.50  Aligned_cols=112  Identities=9%  Similarity=-0.111  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043068          262 LTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGF  341 (526)
Q Consensus       262 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~  341 (526)
                      ..+..+...+.+.|+.++|...+.......   ...++..+...+...|++++|...|++..+..+. +...|+.+...+
T Consensus       121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~  196 (497)
T d1ya0a1         121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILA  196 (497)
T ss_dssp             ----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHH
T ss_pred             HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHH
Confidence            344445555555555555555554443211   1234445556666666666666666666655433 445566666666


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 043068          342 CKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVE  378 (526)
Q Consensus       342 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~  378 (526)
                      ...|+..+|+..|.+..... .|-..++..|...+.+
T Consensus       197 ~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         197 SSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence            66666666666666655442 3344555555555443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=5e-05  Score=61.52  Aligned_cols=78  Identities=8%  Similarity=-0.108  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHH
Q 043068          403 SYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVD  482 (526)
Q Consensus       403 ~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~  482 (526)
                      +|+.+...+.+. |++++|+..+++.++.++. ++.+|..++.+|...|++++|+..|++.++.+|..+.+...+..+..
T Consensus        64 ~~~nla~~y~k~-~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          64 SHLNLAMCHLKL-QAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh-hhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            345555556665 9999999999999997655 88899999999999999999999999999999988877766654433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.01  E-value=0.00012  Score=57.93  Aligned_cols=62  Identities=15%  Similarity=0.080  Sum_probs=35.4

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068          298 THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR  360 (526)
Q Consensus       298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  360 (526)
                      +|..+..+|.+.|++++|++.+++.++.++. +..+|..+..++...|++++|+..|++..+.
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4445555555666666666666655555433 5555556666666666666666666655554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=0.00011  Score=56.27  Aligned_cols=91  Identities=14%  Similarity=0.215  Sum_probs=49.3

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC---C-----HHHHHHHH
Q 043068          163 SLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP---N-----LLAYNTMI  233 (526)
Q Consensus       163 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~-----~~~~~~li  233 (526)
                      .+...+.+.|++++|++.|.+.++.+  |.+..++..+..+|.+.|++++|++.++++ .+.|   .     ..+|..+.
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            34445555555555555555555554  455555555555555555555555555554 1000   0     12445555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc
Q 043068          234 NGFCKKGELEEAKKCMNEMMNR  255 (526)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~  255 (526)
                      ..+...+++++|++.|++....
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHhc
Confidence            5666666666666666665543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=0.00013  Score=55.81  Aligned_cols=57  Identities=16%  Similarity=0.071  Sum_probs=26.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068          231 TMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMR  288 (526)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~  288 (526)
                      .+...+.+.|++++|+..|++.++.+.. +...+..+..+|.+.|++++|+..+++++
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAI   65 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence            3444444445555555555444444221 34444444444444444444444444443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.92  E-value=0.00017  Score=57.11  Aligned_cols=74  Identities=9%  Similarity=0.012  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHH
Q 043068          403 SYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLT  478 (526)
Q Consensus       403 ~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~  478 (526)
                      +|..+...+.+. |++++|++.++++++.++. +..+|..++.+|...|++++|+..|++.++.+|..+.+...+.
T Consensus        69 ~~~Nla~~~~~l-~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~  142 (153)
T d2fbna1          69 CNLNLATCYNKN-KDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE  142 (153)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHhhHHHHHHHh-cccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            455555566555 9999999999999987654 8899999999999999999999999999999997776655543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.91  E-value=0.00012  Score=59.09  Aligned_cols=64  Identities=16%  Similarity=0.144  Sum_probs=39.8

Q ss_pred             HHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068          296 VSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR  360 (526)
Q Consensus       296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  360 (526)
                      ...+..+..++.+.|++++|+..++++++..+. +..+|..+..+|...|++++|+..|++..+.
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            334555566666666666666666666665433 5566666666666666666666666666654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.89  E-value=8.3e-05  Score=60.12  Aligned_cols=80  Identities=9%  Similarity=-0.021  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068          125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY  204 (526)
Q Consensus       125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~  204 (526)
                      .+..+..+|.+.|++++|+..++++.+..+ .+..+|..+..++.+.|++++|++.|+..++..  |.+..+...+..+.
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~--p~n~~~~~~l~~~~  155 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVK  155 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence            455566677777777777777777776654 456677777777777777777777777777765  55666666655554


Q ss_pred             HHc
Q 043068          205 CKM  207 (526)
Q Consensus       205 ~~~  207 (526)
                      .+.
T Consensus       156 ~~l  158 (169)
T d1ihga1         156 QKI  158 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.83  E-value=0.00065  Score=54.49  Aligned_cols=61  Identities=7%  Similarity=-0.009  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068          299 HKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR  360 (526)
Q Consensus       299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  360 (526)
                      |+.+..+|.+.|++++|+..+++.++.++. +..+|..+..+|...|++++|+..|+++.+.
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            333444445555555555555555444322 4444445555555555555555555555443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.80  E-value=0.00043  Score=55.60  Aligned_cols=91  Identities=13%  Similarity=0.067  Sum_probs=42.7

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcCCC---C-----------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC
Q 043068          128 KLIKAYGDRGNVKAAIFWFHQAKQIENG---A-----------CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD  193 (526)
Q Consensus       128 ~li~~~~~~g~~~~A~~~~~~~~~~~~~---~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~  193 (526)
                      .....+.+.|++++|+..|.+....-..   .           ....|+.+..+|.+.|++++|+..++..++..  |.+
T Consensus        20 e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~--p~~   97 (168)
T d1kt1a1          20 EKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--SAN   97 (168)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc--cch
Confidence            3445555566666666666554431100   0           01223334444445555555555555555443  444


Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068          194 VSTYTTMIRGYCKMGMIENAKKVFDVM  220 (526)
Q Consensus       194 ~~~~~~li~~~~~~g~~~~A~~~~~~~  220 (526)
                      ..+|..+..++...|++++|.+.|+++
T Consensus        98 ~~a~~~~~~~~~~l~~~~~A~~~~~~a  124 (168)
T d1kt1a1          98 EKGLYRRGEAQLLMNEFESAKGDFEKV  124 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            444544555555555555555444443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.76  E-value=4e-05  Score=60.17  Aligned_cols=127  Identities=13%  Similarity=0.127  Sum_probs=79.5

Q ss_pred             HHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 043068          133 YGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRV----------NSIKLAEEFFHQIVKENVVPPDVSTYTTMIR  202 (526)
Q Consensus       133 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~  202 (526)
                      |-+.+.|++|++.|+...+..+ .+..++..+..++...          +.+++|+..|++.++.+  |.+..+|..+..
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P-~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~--P~~~~a~~~lG~   83 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGN   83 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc--chhhHHHhhHHH
Confidence            3455668888888888887774 5577777777777643          44577888888888876  778888888888


Q ss_pred             HHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043068          203 GYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKM  282 (526)
Q Consensus       203 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~  282 (526)
                      +|...|++.            ++...         ..+.+++|.+.|++.++.  .|+...|...+..+.      +|.+
T Consensus        84 ~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~~------ka~~  134 (145)
T d1zu2a1          84 AYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTA------KAPQ  134 (145)
T ss_dssp             HHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH------THHH
T ss_pred             HHHHcccch------------hhHHH---------HHHhHHHhhhhhhccccc--CCCHHHHHHHHHHHH------HHHH
Confidence            887765421            11110         012346666677666665  455555554444442      3445


Q ss_pred             HHHHHHHcC
Q 043068          283 LMAKMRLNG  291 (526)
Q Consensus       283 ~~~~~~~~~  291 (526)
                      ++.+..+.|
T Consensus       135 ~~~e~~k~~  143 (145)
T d1zu2a1         135 LHAEAYKQG  143 (145)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHHHh
Confidence            555554443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.76  E-value=5.2e-05  Score=66.09  Aligned_cols=120  Identities=11%  Similarity=-0.013  Sum_probs=72.2

Q ss_pred             HHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhh
Q 043068          133 YGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIEN  212 (526)
Q Consensus       133 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  212 (526)
                      ..+.|++++|+..+++..+..+ .+...+..+...++..|++++|.+.|+...+..  |.+...+..+...+...+..++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHH
Confidence            3456777777777777776664 556777777777777777777777777777765  5555555555555544444443


Q ss_pred             HHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043068          213 AKKVFDVM---TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNR  255 (526)
Q Consensus       213 A~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  255 (526)
                      +.......   +.+++...+......+...|+.++|.+.++++.+.
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            33222221   11222333444455566667777777777766654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.70  E-value=0.00028  Score=57.33  Aligned_cols=69  Identities=9%  Similarity=0.061  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 043068          195 STYTTMIRGYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMN-----RGCRPNELT  263 (526)
Q Consensus       195 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~  263 (526)
                      ..+..++..+.+.|++++|...++++ .. +-+...|..++.+|.+.|+..+|++.|+++..     .|+.|+..+
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            34555555566666666666665554 11 22445566666666666666666666655422     366666543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.64  E-value=0.00017  Score=56.44  Aligned_cols=83  Identities=12%  Similarity=0.038  Sum_probs=60.5

Q ss_pred             HHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043068          168 LVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKK  247 (526)
Q Consensus       168 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  247 (526)
                      |-+.+.+++|++.|+..++..  |.+..++..+..++...+++..+.+-                      .+.+++|+.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~----------------------~~~~~~Ai~   62 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDA----------------------KQMIQEAIT   62 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHH----------------------HHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHH----------------------HHHHHHHHH
Confidence            445667899999999999887  88899999999888887776665542                      234567888


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 043068          248 CMNEMMNRGCRPNELTYNAMIYGLCING  275 (526)
Q Consensus       248 ~~~~m~~~g~~p~~~~~~~li~~~~~~g  275 (526)
                      .|++.++.... +..+|..+..+|...|
T Consensus        63 ~~~kAl~l~P~-~~~a~~~lG~~y~~~g   89 (145)
T d1zu2a1          63 KFEEALLIDPK-KDEAVWCIGNAYTSFA   89 (145)
T ss_dssp             HHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcch-hhHHHhhHHHHHHHcc
Confidence            88888776433 5667777777776544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.64  E-value=2.4e-05  Score=68.30  Aligned_cols=130  Identities=18%  Similarity=0.151  Sum_probs=69.7

Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHH
Q 043068          343 KIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVE  422 (526)
Q Consensus       343 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~  422 (526)
                      +.|++++|+..+++.++.. +-|...+..+...++..|++++|.+.++...+.  .|+.......+..+....+..+++.
T Consensus         8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHHH
Confidence            4567777777777766652 224566666777777777777777777776662  3543332222222222112222221


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhh
Q 043068          423 DLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKN  475 (526)
Q Consensus       423 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  475 (526)
                      .-.......+.+++...+......+.+.|+.++|.++++++.+..+..+...+
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence            11111111111222334444555677788888888888888888776665433

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.62  E-value=0.00087  Score=54.26  Aligned_cols=59  Identities=8%  Similarity=0.175  Sum_probs=31.5

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068          298 THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEM  357 (526)
Q Consensus       298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  357 (526)
                      .+..++..+.+.|++++|+..++++++..+. +...|..++.+|.+.|+.++|++.|+++
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3444555555555555555555555554433 4555555555555555555555555554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.0012  Score=46.88  Aligned_cols=74  Identities=11%  Similarity=0.068  Sum_probs=53.7

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-----CC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 043068          126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENG-----AC-LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTT  199 (526)
Q Consensus       126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  199 (526)
                      .-.+...+.+.|++++|+.+|++..+....     ++ ..+++.+..++.+.|++++|++.++++++..  |.+..+++.
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~--P~~~~a~~N   85 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC--cCCHHHHHH
Confidence            345677777888888888888877654321     11 4567788888888888888888888888876  666777666


Q ss_pred             HH
Q 043068          200 MI  201 (526)
Q Consensus       200 li  201 (526)
                      +.
T Consensus        86 l~   87 (95)
T d1tjca_          86 LK   87 (95)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.22  E-value=0.0025  Score=50.16  Aligned_cols=19  Identities=5%  Similarity=-0.024  Sum_probs=9.8

Q ss_pred             HHhcCChhHHHHHHHHHHH
Q 043068          168 LVRVNSIKLAEEFFHQIVK  186 (526)
Q Consensus       168 ~~~~g~~~~A~~~~~~~~~  186 (526)
                      +.+.|++++|++.|++.++
T Consensus        19 ~~~~g~y~~Ai~~y~~Al~   37 (156)
T d2hr2a1          19 QLVAGEYDEAAANCRRAME   37 (156)
T ss_dssp             HHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            3444555555555555544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.002  Score=45.78  Aligned_cols=71  Identities=8%  Similarity=0.149  Sum_probs=55.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhH
Q 043068          406 TIICGLCMAKGRMQDVEDLVDRMIRSG-----HNLD-FTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFL  477 (526)
Q Consensus       406 ~ll~~~~~~~g~~~~a~~~~~~~~~~~-----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  477 (526)
                      .+-..+... |++++|...+++.++..     ..++ ..++..|..+|.+.|++++|+..++++++.+|..+.+.+.+
T Consensus        10 ~lG~~~~~~-g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_          10 ELGKVAYTE-ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHT-TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHC-CCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            334444554 89999999998887641     1222 56899999999999999999999999999999888766654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.10  E-value=0.0039  Score=48.99  Aligned_cols=65  Identities=11%  Similarity=0.008  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHC-----CCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068          403 SYNTIICGLCMAKGRMQDVEDLVDRMIRS-----GHNLD-----FTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG  468 (526)
Q Consensus       403 ~~~~ll~~~~~~~g~~~~a~~~~~~~~~~-----~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  468 (526)
                      .|+.+-.++... |++++|.+.+++.++.     ...++     ...+..+..+|...|++++|+..|++.++..+
T Consensus        57 ~~~nlg~~~~~l-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          57 CHAGLAEALAGL-RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            344444454443 6666666666665542     11111     23567788999999999999999999877643

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.42  E-value=0.094  Score=37.91  Aligned_cols=136  Identities=18%  Similarity=0.099  Sum_probs=58.6

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043068          171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMN  250 (526)
Q Consensus       171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  250 (526)
                      .|.+++..++..+.....    +..-||.++--....-+-+...++++.+|.--|..          ..++.......+-
T Consensus        15 dG~ve~Gveii~k~~~ss----~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls----------~C~Nlk~vv~C~~   80 (161)
T d1wy6a1          15 DGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD----------KCQNLKSVVECGV   80 (161)
T ss_dssp             TTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG----------GCSCTHHHHHHHH
T ss_pred             hhhHHhHHHHHHHHcccC----CccccceeeeecccccchHHHHHHHHHHhhhcCch----------hhhcHHHHHHHHH
Confidence            455566666666655543    44445555544444455555555555543222211          1111222111111


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043068          251 EMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN  326 (526)
Q Consensus       251 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  326 (526)
                      .+     .-+...+...++...++|+-++-.+++..+.+.+ ++++.....+..+|-+.|...++-+++.+.-+.|
T Consensus        81 ~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          81 IN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             Hh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            11     0022233334444445555555555554444333 4444444445555555555555555555444444

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.09  E-value=0.052  Score=40.78  Aligned_cols=59  Identities=14%  Similarity=0.160  Sum_probs=30.3

Q ss_pred             CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068          138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC  205 (526)
Q Consensus       138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~  205 (526)
                      ++++|+++|++..+.+.   ...+..|..  ....+.++|.+.+++..+.|    +...+..|...|.
T Consensus         8 d~~~A~~~~~kaa~~g~---~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g----~~~a~~~Lg~~y~   66 (133)
T d1klxa_           8 DLKKAIQYYVKACELNE---MFGCLSLVS--NSQINKQKLFQYLSKACELN----SGNGCRFLGDFYE   66 (133)
T ss_dssp             HHHHHHHHHHHHHHTTC---TTHHHHHHT--CTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCC---hhhhhhhcc--ccccCHHHHHHHHhhhhccc----chhhhhhHHHhhh
Confidence            56677777777665542   222222321  22345566666666666554    4444444444443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.98  E-value=0.091  Score=39.32  Aligned_cols=13  Identities=8%  Similarity=0.161  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHHH
Q 043068          418 MQDVEDLVDRMIR  430 (526)
Q Consensus       418 ~~~a~~~~~~~~~  430 (526)
                      .++|.+++++..+
T Consensus       111 ~~~A~~~~~~Aa~  123 (133)
T d1klxa_         111 EKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3334444443333

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.18  E-value=0.056  Score=39.47  Aligned_cols=61  Identities=5%  Similarity=0.025  Sum_probs=47.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhh
Q 043068          416 GRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNF  476 (526)
Q Consensus       416 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  476 (526)
                      .+++++..++++..+.+..-....+-.|..+|.+.|++++|.+.++++++..|....+.+.
T Consensus        52 ~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          52 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            4677899999998875432123577788889999999999999999999999876654443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=89.96  E-value=6.7  Score=35.52  Aligned_cols=169  Identities=12%  Similarity=0.007  Sum_probs=82.2

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHH
Q 043068          239 KGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGY  318 (526)
Q Consensus       239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  318 (526)
                      .+..+.+...+......+  .+.......+......+++..+...+..|.... .......--+..++...|+.+.|...
T Consensus       265 ~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~  341 (450)
T d1qsaa1         265 NDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEI  341 (450)
T ss_dssp             TTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHH
Confidence            344555555555554442  233333334444455566666666666553211 11222333455666666666666666


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCH----HHHHHHHHHHHHcCCHHHHHHHHHHc
Q 043068          319 LRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLK--PTV----FSFNAVFRILVENGELDRAILLLKQM  392 (526)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~----~~~~~li~~~~~~g~~~~a~~~~~~~  392 (526)
                      |..+...   ++  -|..|...  +.|..-.       +......  +..    ..-..-+..+...|....|...|..+
T Consensus       342 ~~~~a~~---~~--fYG~LAa~--~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l  407 (450)
T d1qsaa1         342 LHQLMQQ---RG--FYPMVAAQ--RIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANL  407 (450)
T ss_dssp             HHHHHTS---CS--HHHHHHHH--HTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhcC---CC--hHHHHHHH--HcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHH
Confidence            6665432   22  22222211  1121100       0000000  000    00112345677889999999988877


Q ss_pred             ccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 043068          393 PQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRM  428 (526)
Q Consensus       393 ~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~  428 (526)
                      ....   +......+... ....|..+.|+....+.
T Consensus       408 ~~~~---~~~~~~~la~l-A~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         408 VKSK---SKTEQAQLARY-AFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             HTTC---CHHHHHHHHHH-HHHTTCHHHHHHHHHHT
T ss_pred             HhCC---CHHHHHHHHHH-HHHCCChhHHHHHHHHH
Confidence            6532   33344444443 34459999988777665

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=89.86  E-value=2.5  Score=30.36  Aligned_cols=140  Identities=11%  Similarity=0.064  Sum_probs=104.6

Q ss_pred             HHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhh
Q 043068          133 YGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIEN  212 (526)
Q Consensus       133 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  212 (526)
                      +.-.|..++..++..+....   .+..-||-+|.-....-+-+-..++++.+-+.-    |          ..+.+++..
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~F----D----------ls~C~Nlk~   74 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----D----------LDKCQNLKS   74 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----C----------GGGCSCTHH
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhc----C----------chhhhcHHH
Confidence            45578899999999887754   346778888877777777777777777664432    2          134455555


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 043068          213 AKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGF  292 (526)
Q Consensus       213 A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  292 (526)
                      ...-+-.++  .+...++..++.+.+.|+-++-.++++++.+. -+|++.....+..+|.+.|...++-+++.++-+.|+
T Consensus        75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            555555554  24556677888899999999999999997774 467888888999999999999999999999988885

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.98  E-value=2.9  Score=30.00  Aligned_cols=24  Identities=17%  Similarity=0.209  Sum_probs=10.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHH
Q 043068          336 VVINGFCKIGKSDEAISLLKEMRA  359 (526)
Q Consensus       336 ~li~~~~~~g~~~~A~~~~~~m~~  359 (526)
                      .|.-+|.+.|++++|.+.++.+.+
T Consensus        78 ~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          78 YLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHc
Confidence            333344444444444444444443

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.90  E-value=1.6  Score=29.72  Aligned_cols=62  Identities=11%  Similarity=0.031  Sum_probs=45.2

Q ss_pred             CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 043068          138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMI  201 (526)
Q Consensus       138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li  201 (526)
                      +.=++.+.++.+...+.-|++....+.+++|.+.+++..|.++|+.++.+.  .++...|..++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~--~~~k~~y~yil   82 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVI   82 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcHHHHHHHH
Confidence            445667777777777777888888888888888888888888888887654  23344555544

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.55  E-value=4.3  Score=27.47  Aligned_cols=54  Identities=7%  Similarity=0.094  Sum_probs=45.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc
Q 043068          417 RMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRL  470 (526)
Q Consensus       417 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~  470 (526)
                      +.-++.+-++.+......|++.+..+-+++|.+..++.-|.++++-...+....
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~   74 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH   74 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence            566777778888888889999999999999999999999999999888776533