Citrus Sinensis ID: 043072

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
MDVDMIKASQQAEDHMDMMAVIMQMEKLPEFCEAFNNNISPLPHEIHFSNANTNSNISTQPIYHNPNNYVSSPPPTFTNPSSSLPLFINTTTPVQEPMTPPLHQPNNVVTGGRLKTSLPSPSPYPPTLEKRNSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMAGVAYPSLVKASHQMVDNINMQMFR
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHcccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHccccccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHcc
Coil and Loop (DISEMBL)
MDVDMIKASQQAEDHMDMMAVIMQMEKLPEFCEAfnnnisplpheihfsnantnsnistqpiyhnpnnyvssppptftnpssslplfintttpvqepmtpplhqpnnvvtggrlktslpspspypptlekrNSMAAMREMIFRIAAmqpihidpesikppkrrnvkiskdpqsVAARHRREMISERIRILQRivpggtkmdtASMLDEAIHYVKFLKKQVHTLEQagahrpmggvgfqgapmagvaypSLVKASHQMVDNINMQMFR
Flexible Loop (DISEMBL)
MDVDMIKASQQAEDHMDMMAVIMQMEKLPEFCEAFNNNISPLPHEIHFSNANTNSNISTQPIYHNPNNYVSSPPPTFTNPSSSLPLFINTTTPVQEPMTPPLHQPNNVVTGGRLKtslpspspypptLEKRNSMAAMREMIFRIAAMqpihidpesikppkrrnvkiskdpqsvaarhrrEMISERirilqrivpggtKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMAGVAYPSLVKASHQMVDNINMQMFR
Low Complexity Region (SEG)
MDVDMIKASQQAEDHMDMMAVIMQMEKLPEFCEAFNNNISPLPHEIHFSNANTNSNISTQPIYHNPNNYVssppptftnpssslplFINTTTPVQEPMTPPLHQPNNVVTGGRLKtslpspspypptlEKRNSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMAGVAYPSLVKASHQMVDNINMQMFR
Disordered region (IsUnstruct)
*******************AVIMQMEKLPEFCEAFNNNISPLPHEIHF*******************************************************************************************MIFRIAAMQPI**********************************ERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMAGVAYPSLVK***************
Disordered Region (DISOPRED)
MD***********************************************************************************************************************************************************************************MISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVH**********************************************
Disordered Region (DISEMBL)
************EDHMDMMAVIMQMEKLPEFCEAFNNNISPLPHEIHFSNANTNSNISTQPIYHNPNNYVSSPPPTFTNPSSSLPLFINTTTPVQEPMTPPLHQPNNVVTGGRLKTSLPSPSPYPPTLEKRNSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKI**********HRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMAGVAYPSLVKASHQMVDNINMQMFR
Disordered Region (DISPRO)
**VDMIKASQQAEDHMDMMAVIMQMEKLPEFCEAFNNNISPLPHEIHFSN*****NISTQPIYHNPNNYVSSPPPTFTNPSSSLPLFINTTTPVQEP*T**********************************MAAMREMIFRIAAMQPIHIDPESIK**************S****H**EMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGA***************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVDMIKASQQAEDHMDMMAVIMQMEKLPEFCEAFNNNISPLPHEIHFSNANTNSNISTQPIYHNPNNYVSSPPPTFTNPSSSLPLFINTTTPVQEPMTPPLHQPNNVVTGGRLKTSLPSPSPYPPTLEKRNSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMAGVAYPSLVKASHQMVDNINMQMFR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	267	2.2.26 [Sep-21-2011]
Q9SND4	231	Transcription factor HEC2	yes	no	0.573	0.662	0.616	3e-38
Q9FHA7	241	Transcription factor HEC1	no	no	0.636	0.705	0.522	6e-38
O81313	198	Transcription factor IND	no	no	0.385	0.520	0.607	7e-30
Q8S3D2	373	Transcription factor bHLH	no	no	0.415	0.297	0.558	7e-30
Q9LXD8	224	Transcription factor HEC3	no	no	0.367	0.437	0.704	2e-28
Q7XAQ6	215	Transcription factor LAX	no	no	0.228	0.283	0.693	2e-17
Q9M041	912	Transcription factor bHLH	no	no	0.220	0.064	0.677	5e-16
Q84WK0	352	Transcription factor bHLH	no	no	0.202	0.153	0.629	2e-14
Q3E7L7	223	Transcription factor bHLH	no	no	0.344	0.412	0.404	2e-14
Q8LEG1	258	Transcription factor bHLH	no	no	0.254	0.263	0.514	3e-14

>sp|Q9SND4|HEC2_ARATH Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1

 Score =  159 bits (401), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/172 (61%), Positives = 118/172 (68%), Gaps = 19/172 (11%)

Query: 81  SSSLPLFINTT---TPVQEPMTPPLHQPNNVVTGGRLKTSLPSPSPYPPTLEKRNS---- 133
           S++ P F N T    P  + M  P HQP     G   + + PSPS   P  EKR      
Sbjct: 40  SNTHPFFFNPTHSHLPFDQTM--PHHQP-----GLNFRYA-PSPSSSLP--EKRGGCSDN 89

Query: 134 --MAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQ 191
             MAAMREMIFRIA MQPIHIDPES+KPPKR+NV+ISKDPQSVAARHRRE ISERIRILQ
Sbjct: 90  ANMAAMREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQSVAARHRRERISERIRILQ 149

Query: 192 RIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMA 243
           R+VPGGTKMDTASMLDEAIHYVKFLKKQV +LE+       G     G  +A
Sbjct: 150 RLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEEHAVVNGGGMTAVAGGALA 201

Required for the female reproductive tract development and fertility.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHA7|HEC1_ARATH Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1

 Score =  157 bits (398), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 116/222 (52%), Positives = 134/222 (60%), Gaps = 52/222 (23%)

Query: 17  DMMAVIM-QMEKLPEFCEAFNNNISPLPHEIHFSNANTNSNISTQPIYHNPNNYVSSPPP 75
           D+M ++M QMEKLPEFC                                NPN+   SP  
Sbjct: 4   DIMNMMMHQMEKLPEFC--------------------------------NPNSSFFSPDH 31

Query: 76  TFTNPSSSLPLFINTTTPVQEPMTPPLHQPNNVVTGGRLK--TSLPSPSPYPPT-LEKRN 132
             T P     LF +T       MT   ++P      G L   +S+   + Y    L+KRN
Sbjct: 32  NNTYPF----LFNSTHYQSDHSMT---NEPGFRYGSGLLTNPSSISPNTAYSSVFLDKRN 84

Query: 133 S---------MAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMI 183
           +         MAAMREMIFRIA MQPIHIDPE++KPPKRRNV+ISKDPQSVAARHRRE I
Sbjct: 85  NSNNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERI 144

Query: 184 SERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQ 225
           SERIRILQR+VPGGTKMDTASMLDEAIHYVKFLKKQV +LE+
Sbjct: 145 SERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEE 186

Required for the female reproductive tract development and fertility.

Arabidopsis thaliana (taxid: 3702)

>sp|O81313|IND_ARATH Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3

 Score =  131 bits (329), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 68/112 (60%), Positives = 81/112 (72%), Gaps = 9/112 (8%)

Query: 136 AMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVP 195
           AM+EM + IA MQP+ IDP ++  P RRNV+IS DPQ+V AR RRE ISE+IRIL+RIVP
Sbjct: 87  AMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRIVP 146

Query: 196 GGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMAGVAY 247
           GG KMDTASMLDEAI Y KFLK+QV  L+      P   +   GAPMA  +Y
Sbjct: 147 GGAKMDTASMLDEAIRYTKFLKRQVRILQ------PHSQI---GAPMANPSY 189

Transcription regulator required for seed dispersal. Involved in the differentiation of all three cell types required for fruit dehiscence. Acts as the key regulator in a network including SHP and ALC that controls specification of the valve margin. Works with ALC, SHP, and FUL to allow differentiation of the lignified valve layer, the spring-loaded mechanism of fruit that promotes opening. Regulates the expression of the YJ80 marker.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S3D2|BH087_ARATH Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1

 Score =  130 bits (328), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 81/111 (72%)

Query: 133 SMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQR 192
           ++A M+EMI+R AA +P++   E ++ PKR+NVKIS DPQ+VAAR RRE ISE+IR+LQ 
Sbjct: 241 AIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQT 300

Query: 193 IVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMA 243
           +VPGGTKMDTASMLDEA +Y+KFL+ QV  LE          + F  AP +
Sbjct: 301 LVPGGTKMDTASMLDEAANYLKFLRAQVKALENLRPKLDQTNLSFSSAPTS 351

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXD8|HEC3_ARATH Transcription factor HEC3 OS=Arabidopsis thaliana GN=HEC3 PE=1 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/98 (70%), Positives = 82/98 (83%)

Query: 134 MAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRI 193
           + AM+EM+++IAAMQ + IDP ++K PKRRNV+IS DPQSVAARHRRE ISERIRILQR+
Sbjct: 92  LGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRL 151

Query: 194 VPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRP 231
           VPGGTKMDTASMLDEAI YVKFLK+Q+  L     + P
Sbjct: 152 VPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNNTGYTP 189

Required for the female reproductive tract development and fertility.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XAQ6|LAX_ORYSJ Transcription factor LAX PANICLE OS=Oryza sativa subsp. japonica GN=LAX PE=1 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 165 VKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLE 224
            K+S DPQSVAAR RR  IS+R R+L+ +VPGG+KMDT SML++AIHYVKFLK QV TL 
Sbjct: 38  AKLSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQV-TLH 96

Query: 225 QA 226
           QA
Sbjct: 97  QA 98

Transcription factor that seems to regulate organogenesis in postembryonic development. Involved in regulating shoot branching by controlling axillary meristem initiation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M041|BH140_ARATH Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140 PE=4 SV=1

 Score = 85.1 bits (209), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 45/59 (76%)

Query: 162 RRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQV 220
           R    +S DPQSVAAR RR  IS+R +ILQ +VPGG KMDT SMLDEAI YVKFLK Q+
Sbjct: 38  RSTSTLSTDPQSVAARDRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQI 96

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WK0|BH085_ARATH Transcription factor bHLH85 OS=Arabidopsis thaliana GN=BHLH85 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 45/54 (83%)

Query: 170 DPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTL 223
           DPQS+ AR RRE I+ER+RILQ +VP GTK+D ++ML+EA+HYVKFL+ Q+  L
Sbjct: 275 DPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLL 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E7L7|BH139_ARATH Transcription factor bHLH139 OS=Arabidopsis thaliana GN=BHLH139 PE=4 SV=1

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 2/94 (2%)

Query: 146 AMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASM 205
           A+  +    +S+K   + N  I+ DPQS+ AR RRE I++R++ LQ +VP GTK+D ++M
Sbjct: 117 ALGLVSNTSKSLKRKAKANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTM 176

Query: 206 LDEAIHYVKFLKKQVHTL--EQAGAHRPMGGVGF 237
           L++A+HYVKFL+ Q+  L  E    + P+   G 
Sbjct: 177 LEDAVHYVKFLQLQIKLLSSEDLWMYAPLAHNGL 210

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LEG1|BH054_ARATH Transcription factor bHLH54 OS=Arabidopsis thaliana GN=BHLH54 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 49/68 (72%)

Query: 156 SIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKF 215
           S+K   R     + DPQS+ AR RRE I+ER++ LQ +VP GTK+D ++ML+EA+HYVKF
Sbjct: 162 SVKGKTRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKF 221

Query: 216 LKKQVHTL 223
           L+ Q+  L
Sbjct: 222 LQLQIKLL 229

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
224094310	239	predicted protein [Populus trichocarpa]	0.857	0.958	0.626	2e-64
224084350	263	predicted protein [Populus trichocarpa]	0.910	0.923	0.613	2e-62
255644916	242	unknown [Glycine max]	0.812	0.896	0.562	8e-60
225438732	252	PREDICTED: transcription factor HEC1 [Vi	0.925	0.980	0.599	9e-58
255565212	278	DNA binding protein, putative [Ricinus c	0.928	0.892	0.555	2e-56
225458639	248	PREDICTED: transcription factor HEC1 [Vi	0.820	0.883	0.579	3e-56
255538274	274	transcription factor, putative [Ricinus	0.917	0.894	0.543	5e-56
356541813	242	PREDICTED: transcription factor HEC1-lik	0.745	0.822	0.598	6e-53
356496900	251	PREDICTED: transcription factor HEC1-lik	0.835	0.888	0.541	1e-50
357482887	247	Transcription factor HEC2 [Medicago trun	0.707	0.765	0.630	2e-50

>gi|224094310|ref|XP_002310136.1| predicted protein [Populus trichocarpa] gi|222853039|gb|EEE90586.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 151/241 (62%), Positives = 180/241 (74%), Gaps = 12/241 (4%)

Query: 1   MDVDMIKASQQAEDHMDMMAVIMQMEKLPEFC-EAFNN--NISPLPHEIHFSNANTNSNI 57
           MDVDM+K+S   E++MDMM V+MQMEKLP+FC E F+N  N S +  EI FSN N  S +
Sbjct: 1   MDVDMMKSSS-GEENMDMMTVMMQMEKLPDFCSEPFHNTTNTSTILQEIQFSNGNPTSIV 59

Query: 58  STQPIYHNPNNYVSSPPPTFTNPS-SSLPLFINTTTPVQEPMTPPLHQPNNVVTGGRLKT 116
           ++ PIYHN N + SSPP  F NP   S+P      TP+QEPMTPPL Q N +    +  T
Sbjct: 60  ASPPIYHN-NPHASSPP--FINPPPCSMPFM---GTPIQEPMTPPL-QHNMMANKFKYST 112

Query: 117 SLPSPSPYPPTLEKRNSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAA 176
              + + +  ++EK+N  A +R+M FRIAAMQPIHIDPES+KPPKRRNVKISKDPQSVAA
Sbjct: 113 PFSNANSFLSSIEKKNPTAEIRDMTFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAA 172

Query: 177 RHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVG 236
           RHRRE ISER+RILQR+VPGGTKMDTASMLDEAIHYVKFLKKQV +LEQAGA+ P G   
Sbjct: 173 RHRRERISERMRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEQAGANTPNGWFW 232

Query: 237 F 237
            
Sbjct: 233 L 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084350|ref|XP_002307268.1| predicted protein [Populus trichocarpa] gi|222856717|gb|EEE94264.1| predicted protein [Populus trichocarpa]

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 157/256 (61%), Positives = 186/256 (72%), Gaps = 13/256 (5%)

Query: 1   MDVDMIKASQQAEDHMDMMAVIMQMEKLPEFC-EAFNN--NISPLPHEIHFSNANTNSN- 56
           MDVDM+K+S   E+HMDMM ++MQMEKLP+FC E F N  N S L  EI FSN N  +N 
Sbjct: 1   MDVDMMKSSS-GEEHMDMMTMMMQMEKLPDFCSEPFYNTTNTSTLLQEIQFSNGNPTANT 59

Query: 57  ISTQPIYHNPNNYVSSPPPTFTNPSSSLPLFINTTTPVQEPMTPPLHQPNNVVTGGRLKT 116
           +++ PI+HNP  + SSPP    NP  S+P      TP+QEP+TP L Q + +       T
Sbjct: 60  VASPPIWHNP--HASSPP--LINPPCSMPFM---GTPIQEPVTPSL-QHDMMAKKFEYGT 111

Query: 117 SLPSPSPYPPTLEKRNSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAA 176
              + + +  ++EK+NS   +REMIFRIAAMQP HIDPES+KPPKR+NVKISKDPQSVAA
Sbjct: 112 PFSNANSFLSSIEKKNSTTTIREMIFRIAAMQPAHIDPESVKPPKRKNVKISKDPQSVAA 171

Query: 177 RHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVG 236
           RHRRE ISERIRILQR+VPGGTKMDTASMLDEAIHYVKFLK QV +LEQ GA+RPMGG  
Sbjct: 172 RHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKMQVQSLEQTGANRPMGGFV 231

Query: 237 FQGAPMAGVAYPSLVK 252
             G  M  V Y SLVK
Sbjct: 232 ITGVTMPSVGYSSLVK 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255644916|gb|ACU22958.1| unknown [Glycine max]

 Score =  236 bits (602), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 149/265 (56%), Positives = 171/265 (64%), Gaps = 48/265 (18%)

Query: 1   MDVDMIKASQQAEDHMDMMAVIMQMEKLPEFCEAF---NNNISPLPHEIHFSNANTNSNI 57
           MDVD++K S      MDMM  +MQMEK PEFCE F   NNN S  P  ++  N    ++ 
Sbjct: 1   MDVDILKTSTSDNISMDMMMTMMQMEKFPEFCEPFYNNNNNTSTAP--LYPENELLINST 58

Query: 58  STQPIY----HNPNNYVSSPPPTFTNPSSSLPLFINTTTPVQEPMTPPLHQPNNVVTGGR 113
           +T P++    +NPN  V +PPP+ +N       FI      Q+PMTP L           
Sbjct: 59  TTLPVFSNVINNPN--VITPPPSSSN-------FIQ-----QQPMTPHLE---------- 94

Query: 114 LKTSLPSPSPYPPTLEKRNSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQS 173
                       P LEKRNS+AAMREMIFR+A MQPIHIDPESIKPPKRRNVKISKDPQS
Sbjct: 95  ------------PNLEKRNSVAAMREMIFRVAVMQPIHIDPESIKPPKRRNVKISKDPQS 142

Query: 174 VAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMG 233
           VAARHRRE ISERI+ILQR+VPGGTKMDTASMLDEAIHYVKFLKKQV TLEQAGA RP+ 
Sbjct: 143 VAARHRRERISERIKILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRPLN 202

Query: 234 GVGF---QGAPMAGVAYPSLVKASH 255
            VGF           +Y   VK+ H
Sbjct: 203 VVGFPTTASNANNNNSYSGFVKSCH 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438732|ref|XP_002277850.1| PREDICTED: transcription factor HEC1 [Vitis vinifera] gi|296082413|emb|CBI21418.3| unnamed protein product [Vitis vinifera]

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 163/272 (59%), Positives = 192/272 (70%), Gaps = 25/272 (9%)

Query: 1   MDVDMIKASQQAEDHMDMMAVIMQMEKLPEFCEAFNNNISPLPHEIHFSNANTNSNISTQ 60
           MD+D++K++   +D MDMM+++MQM+KLPE    +    S LP E+ FS   T + I T 
Sbjct: 1   MDIDVLKST--VQDQMDMMSMMMQMDKLPELFGPYQEP-SELP-EMEFSGGATATTIGTA 56

Query: 61  P-IYHNPNNYVSSPPPTFTNPSSSLPLFINTTTPVQEPMTPPLHQPNNVVTGGRLKTS-- 117
           P ++H+P            NPSSS+      +TPVQEPMTPPL  P+  V  GRLK++  
Sbjct: 57  PPMFHSP----------LINPSSSISFM---STPVQEPMTPPL-LPH--VGSGRLKSAGE 100

Query: 118 LPSPSPYPPTLEKRNSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAAR 177
           L   +P+ P  EK+NSMAAMREMIF IA MQPIHIDPES+KPPKRRNVKISKDPQSVAAR
Sbjct: 101 LCGVNPFSPPSEKKNSMAAMREMIFSIAVMQPIHIDPESVKPPKRRNVKISKDPQSVAAR 160

Query: 178 HRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGF 237
           HRRE ISERIRILQR+VPGGTKMDTASMLDEAIHYVKFLK QV +LE+AGAHRPMG VGF
Sbjct: 161 HRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKNQVQSLERAGAHRPMGVVGF 220

Query: 238 QG--APMAGVAYPSLVKASHQMVDNINMQMFR 267
                 MA   Y SL KA        +MQMFR
Sbjct: 221 PATTTSMANPNYSSLAKAFQTSPMVGSMQMFR 252

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565212|ref|XP_002523598.1| DNA binding protein, putative [Ricinus communis] gi|223537160|gb|EEF38793.1| DNA binding protein, putative [Ricinus communis]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 165/297 (55%), Positives = 191/297 (64%), Gaps = 49/297 (16%)

Query: 1   MDVDMIKASQQAEDH----MDMMAVIMQMEKLPEFCEAFNNNISPLP---HEIHFSNANT 53
           MDVDMIK+S    DH    +DMM ++MQMEKLP+FC+ F+NN S       EI FSN + 
Sbjct: 1   MDVDMIKSSSSGGDHHQEHIDMMTMMMQMEKLPDFCDPFHNNSSSSSSSLQEIQFSNGHN 60

Query: 54  NSNIST-----QPIYHNPNNYVSSPPPTFTNPSSSLPLFINTTTPVQEPMTPPLHQPNNV 108
           ++N +T      PIYH+         PT  NP  S+      TTP+Q P         N 
Sbjct: 61  SNNNNTILPNSPPIYHHS--------PTLINPPPSISFM--ATTPIQGP---------NT 101

Query: 109 VTGGRLKTSL-----PSPSPYPP----------TLEKRNSMAAMREMIFRIAAMQPIHID 153
           +T G L   L      S   YPP          ++EK+NS AA+REMIFRIAAMQPIHID
Sbjct: 102 MTTGSLHQQLQHNMFSSKFKYPPPFSNANSFLSSMEKKNSTAAIREMIFRIAAMQPIHID 161

Query: 154 PESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYV 213
           PESIKPPKRRNVKISKDPQSVAARHRRE ISERIRILQR+VPGGTKMDTASMLDEAIHYV
Sbjct: 162 PESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYV 221

Query: 214 KFLKKQVHTLEQAGAHRPMG-GVGFQGAPMAGVAYPSLVKASHQMVDNI--NMQMFR 267
           KFLKKQV +LEQAGA+R MG G  F G  M  + Y SL+K       N+  +MQM R
Sbjct: 222 KFLKKQVQSLEQAGANRSMGAGFPFSGLTMPNMGYSSLLKNCQPAHPNMVSSMQMLR 278

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458639|ref|XP_002282817.1| PREDICTED: transcription factor HEC1 [Vitis vinifera] gi|302142304|emb|CBI19507.3| unnamed protein product [Vitis vinifera]

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 138/238 (57%), Positives = 169/238 (71%), Gaps = 19/238 (7%)

Query: 1   MDVDMIKASQQAEDHMDMMAVIMQMEKLPEFCEAFNNNISPLPHEIHFSNANTNSNISTQ 60
           MD+D++K++ + +    M  ++MQM+KLPEFC  +N  ++ LP  + FS   +    +T 
Sbjct: 1   MDIDLLKSAPEDQ----MEMMMMQMDKLPEFCGTYNE-MAELP-SMGFSGGGS----ATM 50

Query: 61  P-IYHNPNNYVSSPPPTFTNPSSSLPLFINTTTPVQEPMTPPLHQPNNVVTGGRLKTSLP 119
           P I+ NP  +V+SP  TF N  S++    N TTP QEP T P    N+ V   R    L 
Sbjct: 51  PQIFDNP--HVASP--TFINSPSTISF--NGTTPPQEP-TAPAFLTNSAVARWRGTGELS 103

Query: 120 SPSPYPPTLEKRNSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHR 179
                    +KRNSMAAMREMIFRIAAMQP+HIDPES+KPPKRRNVKISKDPQSVAARHR
Sbjct: 104 GVCNLSTPAQKRNSMAAMREMIFRIAAMQPVHIDPESVKPPKRRNVKISKDPQSVAARHR 163

Query: 180 REMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGF 237
           RE ISE+IRILQR+VPGGTKMDTASMLDEAIHYVKFLK QV +LE+A A+RP  G+GF
Sbjct: 164 RERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRP-AGIGF 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538274|ref|XP_002510202.1| transcription factor, putative [Ricinus communis] gi|223550903|gb|EEF52389.1| transcription factor, putative [Ricinus communis]

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 145/267 (54%), Positives = 176/267 (65%), Gaps = 22/267 (8%)

Query: 1   MDVDMIKASQQAEDHMDMMAVIMQMEKLPEFCEAFNNNISPLPHEIHFSNANTNSNISTQ 60
           M++D + +S   ED M+M   IM M+KLP+F  A+N+    L     F  A+T S  +  
Sbjct: 1   MEIDQLTSSTATEDQMEM---IMMMDKLPDFFGAYNDVAHDLAPTTEFPGASTTSTTAVS 57

Query: 61  PIYHNPNNYVSSP----PPTFTNPSSSLPLFINTTTPVQEPMTPPLHQPNNVVTGGRLKT 116
            I H    ++SSP     P+F +  SS+P F N  TP+Q+  TPP    +N+    R + 
Sbjct: 58  AIPH----FMSSPHIASSPSFMSLPSSVP-FTNNNTPMQDESTPPF--TSNLAAAERWRD 110

Query: 117 --SLPSPSPYPPTLEKRNSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSV 174
               P  + Y    +KRNSMAAMREMIFRIAAMQPIHIDPES+KPPKRRNVKISKDPQSV
Sbjct: 111 MGEFPGANAYSTPSQKRNSMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSV 170

Query: 175 AARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRP--- 231
           AARHRRE ISERIRILQR+VPGGTKMDTASMLDEAIHYVKFLK QV +LE+A A RP   
Sbjct: 171 AARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAQASRPSTS 230

Query: 232 --MGGVGFQGAPMAGVAYPSLVKASHQ 256
               G+GF  A  +G  +P + KA  Q
Sbjct: 231 SSSTGIGFPIAMSSGSYFP-MGKAYQQ 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541813|ref|XP_003539367.1| PREDICTED: transcription factor HEC1-like [Glycine max]

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 146/244 (59%), Positives = 165/244 (67%), Gaps = 45/244 (18%)

Query: 1   MDVDMIKASQQAEDHMDMMAVIMQMEKLPEFCEAF---NNNISPLPHEIHFSNANTNSNI 57
           MDVD++K S      MDMM  +MQMEK PEFCE F   NNN S  P  ++  N    ++ 
Sbjct: 1   MDVDILKTSTSDNISMDMMMTMMQMEKFPEFCEPFYNNNNNTSTAP--LYPENELLINST 58

Query: 58  STQPIY----HNPNNYVSSPPPTFTNPSSSLPLFINTTTPVQEPMTPPLHQPNNVVTGGR 113
           +T P++    +NPN  V +PPP+ +N       FI      Q+PMTP L           
Sbjct: 59  TTLPVFSNVINNPN--VITPPPSSSN-------FIQ-----QQPMTPHLE---------- 94

Query: 114 LKTSLPSPSPYPPTLEKRNSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQS 173
                       P LEKRNS+AAMREMIFR+A MQPIHIDPESIKPPKRRNVKISKDPQS
Sbjct: 95  ------------PNLEKRNSVAAMREMIFRVAVMQPIHIDPESIKPPKRRNVKISKDPQS 142

Query: 174 VAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMG 233
           VAARHRRE ISERIRILQR+VPGGTKMDTASMLDEAIHYVKFLKKQV TLEQAGA RP+ 
Sbjct: 143 VAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRPLN 202

Query: 234 GVGF 237
            VGF
Sbjct: 203 VVGF 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496900|ref|XP_003517303.1| PREDICTED: transcription factor HEC1-like [Glycine max]

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 145/268 (54%), Positives = 165/268 (61%), Gaps = 45/268 (16%)

Query: 1   MDVDMIKASQQAEDHMDMMAVIMQMEKLPEFCEAFNNNISP--------LPHEIHFSNAN 52
           MDVD +K S        MM + MQMEK PEFCE F NN +          P   +F N+ 
Sbjct: 1   MDVDKLKTSTSDSSMDMMMMM-MQMEKFPEFCEPFYNNNTTTTTTTTLLYPENEYFLNST 59

Query: 53  TNSNISTQPIYHNPNN--YVSSPPPTFTNPSSSLPLFINTTTPVQEPMTPPLHQPNNVVT 110
           T    +T P++ N NN   ++ PP T  NP      F+     +Q+PMTP L        
Sbjct: 60  T----TTLPVFPNVNNPNVITPPPTTLINPPPPSSNFV-----LQQPMTPHLE------- 103

Query: 111 GGRLKTSLPSPSPYPPTLEKRNSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKD 170
                          P  EK+NS+AAMREMIFR+A MQP+HIDPESIKPPKRRNVKISKD
Sbjct: 104 ---------------PNPEKKNSVAAMREMIFRVAVMQPVHIDPESIKPPKRRNVKISKD 148

Query: 171 PQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHR 230
           PQSVAARHRRE ISERIRILQR+VPGGTKMDTASMLDEAIHYVKFLKKQV TLEQAGA R
Sbjct: 149 PQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGATR 208

Query: 231 PMGGVGFQGAPMAG---VAYPSLVKASH 255
           P+  VGF          V Y S VK+  
Sbjct: 209 PLNVVGFPTTVSNANNNVNYSSFVKSCQ 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482887|ref|XP_003611730.1| Transcription factor HEC2 [Medicago truncatula] gi|355513065|gb|AES94688.1| Transcription factor HEC2 [Medicago truncatula]

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/211 (63%), Positives = 149/211 (70%), Gaps = 22/211 (10%)

Query: 63  YHNPNNYVSSPPPTFTNPSSSLPLFINTTTPVQEPMTPPLHQPNNVVT---GGRLKTSLP 119
           Y N +N  SS  P+  NP  S PL        Q+PMTPPL QPN V T    GR   S  
Sbjct: 51  YGN-SNVTSSLTPSLINPPLSYPL--------QQPMTPPLLQPNRVQTQIPSGRNNNSSL 101

Query: 120 SPSPYPPTLEKRNSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHR 179
           S   YP   EK+NSM+AMREMIFR+A MQPI+IDPE+IKPPKR+NVKISKDPQSVAARHR
Sbjct: 102 S---YP---EKKNSMSAMREMIFRMAVMQPINIDPETIKPPKRKNVKISKDPQSVAARHR 155

Query: 180 REMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQG 239
           RE ISERIRILQR+VPGGTKMDTASMLDEAIHYVKFLKKQV TLEQ GA+RP+  VGF G
Sbjct: 156 RERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQVGANRPLNVVGFPG 215

Query: 240 -APMAGVAYPSLVKASH---QMVDNINMQMF 266
               A  +Y SL++      QMV   + QM 
Sbjct: 216 VVSNANFSYSSLIRGCSQPCQMVGPTSKQML 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
TAIR|locus:2074865	231	HEC2 "AT3G50330" [Arabidopsis	0.419	0.484	0.776	4.2e-47
TAIR|locus:2155543	241	HEC1 "HECATE 1" [Arabidopsis t	0.389	0.431	0.826	6e-46
UNIPROTKB|Q6Z9R3	246	P0461F06.33 "BHLH protein fami	0.430	0.467	0.731	2.8e-42
UNIPROTKB|Q67TR8	236	B1342C04.6 "Basic helix-loop-h	0.453	0.512	0.685	4.6e-42
TAIR|locus:2144791	224	HEC3 "AT5G09750" [Arabidopsis	0.385	0.459	0.679	5.2e-33
TAIR|locus:2126856	198	IND "AT4G00120" [Arabidopsis t	0.411	0.555	0.588	5.6e-29
TAIR|locus:2089418	373	AT3G21330 "AT3G21330" [Arabido	0.445	0.319	0.533	3.1e-28
UNIPROTKB|Q8S0N2	393	P0692C11.41-1 "BHLH transcript	0.355	0.241	0.604	7.3e-27
UNIPROTKB|Q657D1	484	P0697C12.40 "BHLH transcriptio	0.344	0.190	0.591	3.7e-25
UNIPROTKB|Q5TKP7	416	OJ1362_G11.11 "Putative unchar	0.355	0.228	0.532	9e-24

TAIR|locus:2074865 HEC2 "AT3G50330" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
 Identities = 87/112 (77%), Positives = 95/112 (84%)

Query:   133 SMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQR 192
             +MAAMREMIFRIA MQPIHIDPES+KPPKR+NV+ISKDPQSVAARHRRE ISERIRILQR
Sbjct:    91 NMAAMREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQSVAARHRRERISERIRILQR 150

Query:   193 IVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMAG 244
             +VPGGTKMDTASMLDEAIHYVKFLKKQV +LE+       G     G  +AG
Sbjct:   151 LVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEEHAVVNGGGMTAVAGGALAG 202

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010500 "transmitting tissue development" evidence=IGI

GO:0048462 "carpel formation" evidence=IMP

GO:0080126 "ovary septum development" evidence=IGI

TAIR|locus:2155543 HEC1 "HECATE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
 Identities = 86/104 (82%), Positives = 93/104 (89%)

Query:   133 SMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQR 192
             +MAAMREMIFRIA MQPIHIDPE++KPPKRRNV+ISKDPQSVAARHRRE ISERIRILQR
Sbjct:    94 NMAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERISERIRILQR 153

Query:   193 IVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVG 236
             +VPGGTKMDTASMLDEAIHYVKFLKKQV +LE+       GG G
Sbjct:   154 LVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEEQAVVTGGGGGG 197

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010500 "transmitting tissue development" evidence=IGI

GO:0048462 "carpel formation" evidence=IMP

GO:0048445 "carpel morphogenesis" evidence=RCA

UNIPROTKB|Q6Z9R3 P0461F06.33 "BHLH protein family-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 414 (150.8 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
 Identities = 87/119 (73%), Positives = 97/119 (81%)

Query:   135 AAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIV 194
             AAMREMIF IAA+QP++IDPE+++PPKRRNV+IS DPQSVAAR RRE ISERIRILQR+V
Sbjct:   125 AAMREMIFHIAALQPVNIDPETVRPPKRRNVRISTDPQSVAARMRRERISERIRILQRLV 184

Query:   195 PGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGA---HRPMGGVGFQGAPMAGVAYPSL 250
             PGGTKMDTASMLDEAIHYVKFLK QV +LE+A A   HRP        A  A VAYP L
Sbjct:   185 PGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAAANGHRPPPPTATSAAA-ATVAYPGL 242

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q67TR8 B1342C04.6 "Basic helix-loop-helix (BHLH)-like protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 415 (151.1 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
 Identities = 85/124 (68%), Positives = 98/124 (79%)

Query:   132 NSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQ 191
             +S  AMREMIF IAA+QP+ IDPE+++PPKRRNV+ISKDPQSVAAR RRE ISERIRILQ
Sbjct:   112 SSSEAMREMIFHIAALQPVEIDPEAVRPPKRRNVRISKDPQSVAARLRRERISERIRILQ 171

Query:   192 RIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMAGVAYPSLV 251
             R+VPGGTKMDTASMLDEAIHYVKFLK QV +LE+A A    G    + A   G AYP+ +
Sbjct:   172 RLVPGGTKMDTASMLDEAIHYVKFLKSQVQSLERAAA--ATGAAAHRAAAF-GAAYPAAL 228

Query:   252 KASH 255
                H
Sbjct:   229 PMQH 232

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2144791 HEC3 "AT5G09750" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 70/103 (67%), Positives = 83/103 (80%)

Query:   129 EKRNSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIR 188
             E    + AM+EM+++IAAMQ + IDP ++K PKRRNV+IS DPQSVAARHRRE ISERIR
Sbjct:    87 EPLEELGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIR 146

Query:   189 ILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRP 231
             ILQR+VPGGTKMDTASMLDEAI YVKFLK+Q+  L     + P
Sbjct:   147 ILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNNTGYTP 189

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010500 "transmitting tissue development" evidence=IGI

GO:0048462 "carpel formation" evidence=IMP

TAIR|locus:2126856 IND "AT4G00120" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 70/119 (58%), Positives = 83/119 (69%)

Query:   129 EKRNSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIR 188
             E    M AM+EM + IA MQP+ IDP ++  P RRNV+IS DPQ+V AR RRE ISE+IR
Sbjct:    80 EYDEDMDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISEKIR 139

Query:   189 ILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMAGVAY 247
             IL+RIVPGG KMDTASMLDEAI Y KFLK+QV  L+    H  +G      APMA  +Y
Sbjct:   140 ILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQP---HSQIG------APMANPSY 189

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010197 "polar nucleus fusion" evidence=IMP

TAIR|locus:2089418 AT3G21330 "AT3G21330" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 64/120 (53%), Positives = 86/120 (71%)

Query:   133 SMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQR 192
             ++A M+EMI+R AA +P++   E ++ PKR+NVKIS DPQ+VAAR RRE ISE+IR+LQ 
Sbjct:   241 AIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQT 300

Query:   193 IVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMA-GVAYPSLV 251
             +VPGGTKMDTASMLDEA +Y+KFL+ QV  LE          + F  AP +  + +PS +
Sbjct:   301 LVPGGTKMDTASMLDEAANYLKFLRAQVKALENLRPKLDQTNLSFSSAPTSFPLFHPSFL 360

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q8S0N2 P0692C11.41-1 "BHLH transcription factor-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 58/96 (60%), Positives = 77/96 (80%)

Query:   133 SMAAMREMIFRIAAMQPIHIDPESIKP-PKRRNVKISKDPQSVAARHRREMISERIRILQ 191
             +MA ++EMI+R AAM+P+H+  E+    P+R+NV+IS DPQ+VAAR RRE +S+R+R+LQ
Sbjct:   246 AMAQVKEMIYRAAAMRPVHLGTEAAADKPRRKNVRISSDPQTVAARLRRERVSDRLRVLQ 305

Query:   192 RIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAG 227
             ++VPGG KMDTASMLDEA  Y+KFLK QV  LE  G
Sbjct:   306 KLVPGGNKMDTASMLDEAASYLKFLKSQVQKLETLG 341

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q657D1 P0697C12.40 "BHLH transcription-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 290 (107.1 bits), Expect = 3.7e-25, P = 3.7e-25
 Identities = 55/93 (59%), Positives = 76/93 (81%)

Query:   133 SMAAMREMIFRIAAMQPIHIDPESI-KPPKRRNVKISKDPQSVAARHRREMISERIRILQ 191
             ++A ++EMI+R AAM+P+ +  E   + P+RRNV+IS DPQ+VAAR RRE ISER+R+LQ
Sbjct:   335 ALAQVKEMIYRAAAMRPVTLGAEDAGERPRRRNVRISSDPQTVAARQRRERISERLRVLQ 394

Query:   192 RIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLE 224
             ++VPGG KMDTASMLDEA +Y++FLK Q+  L+
Sbjct:   395 KLVPGGAKMDTASMLDEAANYLRFLKSQIRELQ 427

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q5TKP7 OJ1362_G11.11 "Putative uncharacterized protein OJ1362_G11.11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 274 (101.5 bits), Expect = 9.0e-24, P = 9.0e-24
 Identities = 57/107 (53%), Positives = 78/107 (72%)

Query:   133 SMAAMREMIFRIAAMQPIHI-------DPESIKPP-----KRRNVKISKDPQSVAARHRR 180
             ++A ++EM++R A M+P+ +       DP S  PP     +R+NV+IS DPQ+VAAR RR
Sbjct:   257 AIAQVKEMVYRAAPMRPVTLGGPASASDPSSRPPPPPQRPRRKNVRISSDPQTVAARLRR 316

Query:   181 EMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAG 227
             E +SER+R+LQR+VPGG+KMDTA+MLDEA  Y+KFLK Q+  LE  G
Sbjct:   317 ERVSERLRVLQRLVPGGSKMDTATMLDEAASYLKFLKSQLEALETLG 363

GO:0005634 "nucleus" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	267
smart00353	53	smart00353, HLH, helix loop helix domain	6e-10
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	9e-09
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	1e-04

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 53.4 bits (129), Expect = 6e-10
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 173 SVAARHRREMISERIRILQRIVPG---GTKMDTASMLDEAIHYVKFLKKQVHT 222
           +   R RR  I+E    L+ ++P      K+  A +L  AI Y+K L++++  
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQK 53

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 50.3 bits (121), Expect = 9e-09
 Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 169 KDPQSVAARHRREMISERIRILQRIVPG---GTKMDTASMLDEAIHYVKFLKKQVH 221
           ++  ++  R RRE I++    L+ ++P      K+  A +L +A+ Y+K L++ + 
Sbjct: 5   REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 177 RHRREMISERIRILQRIVP--GGTKMDTASMLDEAIHYVKFLK 217
           R RR+ I++    L+ ++P     K+  A +L  AI Y+K L+
Sbjct: 10  RRRRDRINDAFEELRELLPTPPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
smart00353	53	HLH helix loop helix domain.	99.4
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.4
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.34
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	99.26
KOG1318	411	consensus Helix loop helix transcription factor EB	98.97
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.63
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	98.33
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	97.99
KOG0561	373	consensus bHLH transcription factor [Transcription	97.85
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	97.82
KOG3960	284	consensus Myogenic helix-loop-helix transcription	97.82
PLN03217	93	transcription factor ATBS1; Provisional	97.33
KOG4029	228	consensus Transcription factor HAND2/Transcription	97.24
KOG3910	632	consensus Helix loop helix transcription factor [T	95.59
KOG3558	768	consensus Hypoxia-inducible factor 1/Neuronal PAS	92.27
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	91.66
KOG3560	712	consensus Aryl-hydrocarbon receptor [Transcription	89.2
KOG3559	598	consensus Transcriptional regulator SIM1 [Transcri	85.88

>smart00353 HLH helix loop helix domain

Probab=99.40  E-value=5.4e-13  Score=93.17  Aligned_cols=49  Identities=31%  Similarity=0.538  Sum_probs=45.7

Q ss_pred             cHHHHHHHHHHHHHHHHHhccCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 043072          173 SVAARHRREMISERIRILQRIVPG---GTKMDTASMLDEAIHYVKFLKKQVH  221 (267)
Q Consensus       173 s~aER~RRerIner~~~LrsLVP~---~~K~DKaSIL~eAIdYIK~Lq~qVq  221 (267)
                      +..||+||++||++|..|+++||.   +.|+||++||++||+||+.|+.+++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            368999999999999999999994   6789999999999999999999986

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.40  E-value=4.5e-13  Score=94.99  Aligned_cols=52  Identities=27%  Similarity=0.526  Sum_probs=48.8

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 043072          170 DPQSVAARHRREMISERIRILQRIVPGG---TKMDTASMLDEAIHYVKFLKKQVH  221 (267)
Q Consensus       170 ~~hs~aER~RRerIner~~~LrsLVP~~---~K~DKaSIL~eAIdYIK~Lq~qVq  221 (267)
                      ..|+..||+||++||+.|..|+++||..   .|+||++||+.||+||+.|+.+++
T Consensus         6 ~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           6 EAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            3599999999999999999999999987   899999999999999999998863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.34  E-value=1.5e-12  Score=92.36  Aligned_cols=47  Identities=32%  Similarity=0.554  Sum_probs=44.6

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHH
Q 043072          171 PQSVAARHRREMISERIRILQRIVPGG-----TKMDTASMLDEAIHYVKFLK  217 (267)
Q Consensus       171 ~hs~aER~RRerIner~~~LrsLVP~~-----~K~DKaSIL~eAIdYIK~Lq  217 (267)
                      .|+..||+||++||+.|..|+.+||.+     .|+||++||+.||+||+.||
T Consensus         4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            489999999999999999999999976     68999999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=99.26  E-value=3.7e-13  Score=119.60  Aligned_cols=92  Identities=25%  Similarity=0.361  Sum_probs=82.1

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCCC-------CCCChhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcCcCCCCCC
Q 043072          171 PQSVAARHRREMISERIRILQRIVPGG-------TKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMA  243 (267)
Q Consensus       171 ~hs~aER~RRerIner~~~LrsLVP~~-------~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~~~~~~~~~~p~~~~~  243 (267)
                      .|..+||+||+.||..+.-|+.|||.|       .|+.||.||..+||||.+|+.+..+-|.+.+.....+.++.   |.
T Consensus        65 aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~---iI  141 (229)
T KOG1319|consen   65 AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALK---II  141 (229)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence            499999999999999999999999954       47889999999999999999999999999999999988888   88


Q ss_pred             CCCcchHHHhhccCCCcccccc
Q 043072          244 GVAYPSLVKASHQMVDNINMQM  265 (267)
Q Consensus       244 ~~~y~~~~k~~~~~~g~~~~~~  265 (267)
                      ..+|++|++.+|--+|.-+.|+
T Consensus       142 k~~YEqM~~~~qdnp~~~e~~~  163 (229)
T KOG1319|consen  142 KVNYEQMVKAHQDNPHEGEDQV  163 (229)
T ss_pred             HHHHHHHHHhcccCCCcchhhh
Confidence            8999999999995555446554

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=98.97  E-value=5.8e-10  Score=108.65  Aligned_cols=55  Identities=25%  Similarity=0.519  Sum_probs=49.0

Q ss_pred             CCCCcccHHHHHHHHHHHHHHHHHhccCCCCC----CCChhhHHHHHHHHHHHHHHHHH
Q 043072          167 ISKDPQSVAARHRREMISERIRILQRIVPGGT----KMDTASMLDEAIHYVKFLKKQVH  221 (267)
Q Consensus       167 ~sk~~hs~aER~RRerIner~~~LrsLVP~~~----K~DKaSIL~eAIdYIK~Lq~qVq  221 (267)
                      +.|+.|+.+|||||++||++|.+|..|||.|.    |..|..||..++|||+.|++..+
T Consensus       232 ~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q  290 (411)
T KOG1318|consen  232 RKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ  290 (411)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence            35578999999999999999999999999983    45699999999999999988655

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.63  E-value=1.8e-08  Score=92.69  Aligned_cols=52  Identities=17%  Similarity=0.429  Sum_probs=46.2

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCCC--------CCCChhhHHHHHHHHHHHHHHHHHH
Q 043072          171 PQSVAARHRREMISERIRILQRIVPGG--------TKMDTASMLDEAIHYVKFLKKQVHT  222 (267)
Q Consensus       171 ~hs~aER~RRerIner~~~LrsLVP~~--------~K~DKaSIL~eAIdYIK~Lq~qVq~  222 (267)
                      .+-+.|||||+|||+.+.+|++||+.+        .|++||.||+-||+|++.|+...+.
T Consensus        35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~   94 (250)
T KOG4304|consen   35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA   94 (250)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence            477899999999999999999999932        6788999999999999999986543

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=98.33  E-value=5.7e-07  Score=93.98  Aligned_cols=51  Identities=25%  Similarity=0.464  Sum_probs=47.5

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHH
Q 043072          169 KDPQSVAARHRREMISERIRILQRIVPGG----TKMDTASMLDEAIHYVKFLKKQ  219 (267)
Q Consensus       169 k~~hs~aER~RRerIner~~~LrsLVP~~----~K~DKaSIL~eAIdYIK~Lq~q  219 (267)
                      ++.|+.+|||||+++|.-|.+|.+|||.+    .|+||..||..||+.||.+++.
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            46799999999999999999999999986    5999999999999999999875

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=97.99  E-value=1.6e-05  Score=72.80  Aligned_cols=54  Identities=22%  Similarity=0.322  Sum_probs=46.1

Q ss_pred             CCCcccHHHHHHHHHHHHHHHHHhccCCCC--CCCC-hhhHHHHHHHHHHHHHHHHH
Q 043072          168 SKDPQSVAARHRREMISERIRILQRIVPGG--TKMD-TASMLDEAIHYVKFLKKQVH  221 (267)
Q Consensus       168 sk~~hs~aER~RRerIner~~~LrsLVP~~--~K~D-KaSIL~eAIdYIK~Lq~qVq  221 (267)
                      ++..|+.-||+||+.|+++|..|+.+||.+  .+.. .++||+.|++||+.|+.+..
T Consensus        59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~  115 (232)
T KOG2483|consen   59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSA  115 (232)
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHH
Confidence            345699999999999999999999999975  3333 69999999999999987654

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=97.85  E-value=7.6e-06  Score=77.81  Aligned_cols=51  Identities=22%  Similarity=0.437  Sum_probs=45.7

Q ss_pred             ccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHHHH
Q 043072          172 QSVAARHRREMISERIRILQRIVPG--GTKMDTASMLDEAIHYVKFLKKQVHT  222 (267)
Q Consensus       172 hs~aER~RRerIner~~~LrsLVP~--~~K~DKaSIL~eAIdYIK~Lq~qVq~  222 (267)
                      -+..||+|-.-||-.|..||+|+|.  |.|+.||.||..+.+||.+|+.+.-+
T Consensus        64 ANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~  116 (373)
T KOG0561|consen   64 ANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTE  116 (373)
T ss_pred             hcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccc
Confidence            4567999999999999999999995  79999999999999999999876443

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=97.82  E-value=8.3e-06  Score=86.24  Aligned_cols=62  Identities=24%  Similarity=0.452  Sum_probs=56.0

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 043072          169 KDPQSVAARHRREMISERIRILQRIVPGG-TKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHR  230 (267)
Q Consensus       169 k~~hs~aER~RRerIner~~~LrsLVP~~-~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~~~  230 (267)
                      |..|+++|||-|--||++|.+|+.+||+. .|+.|..+|..||+||++|+...+++...++..
T Consensus       277 RtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l  339 (953)
T KOG2588|consen  277 RTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASL  339 (953)
T ss_pred             cchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhh
Confidence            56799999999999999999999999996 799999999999999999999888777665543

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=97.82  E-value=5.4e-05  Score=70.43  Aligned_cols=77  Identities=19%  Similarity=0.327  Sum_probs=57.0

Q ss_pred             CCCCCCCCCCCccCC-CCcccHHHHHHHHHHHHHHHHHhc-cCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 043072          154 PESIKPPKRRNVKIS-KDPQSVAARHRREMISERIRILQR-IVPG-GTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHR  230 (267)
Q Consensus       154 ~eS~k~~~rr~~~~s-k~~hs~aER~RRerIner~~~Lrs-LVP~-~~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~~~  230 (267)
                      .+..|..||+....- +..-.+.||+|-+|+||.|.+|++ -+++ ..++-|+.||..||+||..||.-++++.++....
T Consensus       103 ~wackackrks~svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~  182 (284)
T KOG3960|consen  103 LWACKACKRKSTSVDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL  182 (284)
T ss_pred             HHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence            444555555443211 112468899999999999999987 3444 4678999999999999999999999888766543

>PLN03217 transcription factor ATBS1; Provisional

Probab=97.33  E-value=0.00051  Score=54.81  Aligned_cols=52  Identities=25%  Similarity=0.466  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHhccCCC------CCCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 043072          177 RHRREMISERIRILQRIVPG------GTKMDTASMLDEAIHYVKFLKKQVHTLEQAGA  228 (267)
Q Consensus       177 R~RRerIner~~~LrsLVP~------~~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~  228 (267)
                      |---+.|++-+..|+.|+|.      ..|...+-||.||..||+.|+.+|..|-+.-+
T Consensus        16 risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs   73 (93)
T PLN03217         16 RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLS   73 (93)
T ss_pred             CCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34468899999999999994      24556667999999999999999999876543

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=97.24  E-value=0.00032  Score=63.06  Aligned_cols=57  Identities=21%  Similarity=0.371  Sum_probs=50.0

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 043072          171 PQSVAARHRREMISERIRILQRIVPG----GTKMDTASMLDEAIHYVKFLKKQVHTLEQAG  227 (267)
Q Consensus       171 ~hs~aER~RRerIner~~~LrsLVP~----~~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~  227 (267)
                      .++..||.|=+-+|..|..||.+||.    ..|+.|+.+|..||.||++|+.-++.-+...
T Consensus       112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~  172 (228)
T KOG4029|consen  112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL  172 (228)
T ss_pred             hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence            35777999999999999999999994    5689999999999999999999888766543

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=95.59  E-value=0.0067  Score=61.36  Aligned_cols=52  Identities=23%  Similarity=0.270  Sum_probs=43.8

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCCCCC----CChhhHHHHHHHHHHHHHHHHHH
Q 043072          171 PQSVAARHRREMISERIRILQRIVPGGTK----MDTASMLDEAIHYVKFLKKQVHT  222 (267)
Q Consensus       171 ~hs~aER~RRerIner~~~LrsLVP~~~K----~DKaSIL~eAIdYIK~Lq~qVq~  222 (267)
                      ..++.||.|=+.|||.|++|.++.----|    -.|.-||..||.-|-.|++||++
T Consensus       529 aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE  584 (632)
T KOG3910|consen  529 ANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE  584 (632)
T ss_pred             hhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence            35778899988999999999998763222    45899999999999999999985

>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]

Probab=92.27  E-value=0.075  Score=55.74  Aligned_cols=44  Identities=30%  Similarity=0.460  Sum_probs=38.5

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHH
Q 043072          171 PQSVAARHRREMISERIRILQRIVPG----GTKMDTASMLDEAIHYVK  214 (267)
Q Consensus       171 ~hs~aER~RRerIner~~~LrsLVP~----~~K~DKaSIL~eAIdYIK  214 (267)
                      +..-+.|.||.|-|+-|.+|..+||-    ..-+|||+|+.-||-|+|
T Consensus        49 kSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR   96 (768)
T KOG3558|consen   49 KSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR   96 (768)
T ss_pred             hhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence            34457899999999999999999993    256999999999999986

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=91.66  E-value=0.1  Score=45.98  Aligned_cols=49  Identities=27%  Similarity=0.505  Sum_probs=44.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 043072          172 QSVAARHRREMISERIRILQRIVPG--GTKMDTASMLDEAIHYVKFLKKQV  220 (267)
Q Consensus       172 hs~aER~RRerIner~~~LrsLVP~--~~K~DKaSIL~eAIdYIK~Lq~qV  220 (267)
                      |++.||+|-.-+|+.|..||.++|-  ..|..|.--|.-|-.||.+|=.-.
T Consensus        82 anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl  132 (173)
T KOG4447|consen   82 ANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL  132 (173)
T ss_pred             HHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhcc
Confidence            6999999999999999999999995  588999999999999999996543

>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]

Probab=89.20  E-value=0.28  Score=50.66  Aligned_cols=39  Identities=21%  Similarity=0.457  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHH
Q 043072          176 ARHRREMISERIRILQRIVPG----GTKMDTASMLDEAIHYVK  214 (267)
Q Consensus       176 ER~RRerIner~~~LrsLVP~----~~K~DKaSIL~eAIdYIK  214 (267)
                      .||-|||+|-.++.|.+|+|-    ..|+||.|||.-+|-|++
T Consensus        33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr   75 (712)
T KOG3560|consen   33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR   75 (712)
T ss_pred             chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence            456689999999999999994    489999999999999986

>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]

Probab=85.88  E-value=0.8  Score=46.12  Aligned_cols=42  Identities=31%  Similarity=0.456  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHH
Q 043072          174 VAARHRREMISERIRILQRIVPGG----TKMDTASMLDEAIHYVKF  215 (267)
Q Consensus       174 ~aER~RRerIner~~~LrsLVP~~----~K~DKaSIL~eAIdYIK~  215 (267)
                      -+.|.||++-|-.|.+|..|+|-.    ..+||++|+.-|..|||-
T Consensus         7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm   52 (598)
T KOG3559|consen    7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM   52 (598)
T ss_pred             hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence            468999999999999999999942    559999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	267
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	1e-11
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	9e-08
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	1e-07
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	4e-07
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 58.5 bits (142), Expect = 1e-11
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 161 KRRNVKISKDPQSVAARHRREMISERIRILQRIVPG-GTKMDTASMLDEAIHYVKFLKKQ 219
           + R  K  +   +   +  R  I+++I  L+ +V G   K++ +++L +AI Y++FL+  
Sbjct: 1   QSRGEK--RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHS 58

Query: 220 VHTLEQ 225
              L+Q
Sbjct: 59  NQKLKQ 64

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 47.7 bits (114), Expect = 9e-08
 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 177 RHRREMISERIRILQRIVPG---GTKMDTASMLDEAIHYVKFLKKQVHTLEQ 225
           R RR  +      L+  +P      K     +L +A  Y+  ++ +   L  
Sbjct: 15  RQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS 66

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 177 RHRREMISERIRILQRIVPG--GTKMDTASMLDEAIHYVKFLKKQVHTLEQ 225
           R RR+ I +    L+  VP   G K   A +LD+A  Y+++++++ HT +Q
Sbjct: 11  RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 177 RHRREMISERIRILQRIVPG--GTKMDTASMLDEAIHYVKFLKKQVHTLEQ 225
           R RR+ I +    L+  VP   G K   A +LD+A  Y+++++++ HT +Q
Sbjct: 21  RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 177 RHRREMISERIRILQRIVPG------GTKMDTASMLDEAIHYVKFLKKQVH 221
           R RR+ I+  I  L +I+P        +      +L +A  Y++ L++  H
Sbjct: 14  RRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 33/277 (11%), Positives = 76/277 (27%), Gaps = 109/277 (39%)

Query: 1   MDVDMIKASQQAEDHMDMMAVIMQMEKLPEFCEAFN-NNISPLPHEIHFSNANTNSNIST 59
           MD +     +    + D+++V         F + F+  ++  +P  I  S    +     
Sbjct: 7   MDFET---GEHQYQYKDILSVF-----EDAFVDNFDCKDVQDMPKSI-LSKEEIDH---- 53

Query: 60  QPIYHNPNNYVSSPPPTFTNPSSSLPLFINTTTPVQEPMTPPLHQPNNVV---TGGRLKT 116
             I  + +             S +L LF              L +   +V       L+ 
Sbjct: 54  --IIMSKDAV-----------SGTLRLFWTL-----------LSKQEEMVQKFVEEVLRI 89

Query: 117 SLPSPSPYPPTLEKRNSMAAMREMIFRIAAMQPIHIDPESIKPP--KRRNVKISKDPQSV 174
           +      Y                 F ++ ++     P  +     ++R+ ++  D Q  
Sbjct: 90  N------YK----------------FLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVF 126

Query: 175 AARH--RREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPM 232
           A  +  R +   +  + L  +                                    RP 
Sbjct: 127 AKYNVSRLQPYLKLRQALLEL------------------------------------RPA 150

Query: 233 GGVGFQGAPMAGVAYPSLVKA---SHQMVDNINMQMF 266
             V   G  + G     +      S+++   ++ ++F
Sbjct: 151 KNVLIDG--VLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	267
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.62
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.58
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.54
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.52
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.51
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.48
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.46
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.46
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.42
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.35
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.29
4f3l_A	361	Mclock, circadian locomoter output cycles protein	99.01
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	98.99
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.91
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.89
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.51
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.47
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	97.96

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.62  E-value=4.8e-16  Score=119.09  Aligned_cols=59  Identities=25%  Similarity=0.501  Sum_probs=55.8

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 043072          170 DPQSVAARHRREMISERIRILQRIVPGG-TKMDTASMLDEAIHYVKFLKKQVHTLEQAGA  228 (267)
Q Consensus       170 ~~hs~aER~RRerIner~~~LrsLVP~~-~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~  228 (267)
                      ..|+.+||+||++||++|..|++|||++ .|+||++||++||+||++|+.+++.|+.+..
T Consensus         8 ~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~   67 (82)
T 1am9_A            8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENL   67 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999997 8999999999999999999999999998764

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.58  E-value=2.3e-15  Score=122.62  Aligned_cols=63  Identities=21%  Similarity=0.455  Sum_probs=53.2

Q ss_pred             CCCCcccHHHHHHHHHHHHHHHHHhccCCCCC----CCChhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 043072          167 ISKDPQSVAARHRREMISERIRILQRIVPGGT----KMDTASMLDEAIHYVKFLKKQVHTLEQAGAH  229 (267)
Q Consensus       167 ~sk~~hs~aER~RRerIner~~~LrsLVP~~~----K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~~  229 (267)
                      ..+..|+++||+||++||++|..|++|||++.    |++|++||+.||+||++|+.+++.|+.....
T Consensus        26 ~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~   92 (118)
T 4ati_A           26 QKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR   92 (118)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35567999999999999999999999999874    6789999999999999999999999986554

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.54  E-value=6e-15  Score=111.28  Aligned_cols=55  Identities=25%  Similarity=0.457  Sum_probs=50.9

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 043072          170 DPQSVAARHRREMISERIRILQRIVPGG-TKMDTASMLDEAIHYVKFLKKQVHTLE  224 (267)
Q Consensus       170 ~~hs~aER~RRerIner~~~LrsLVP~~-~K~DKaSIL~eAIdYIK~Lq~qVq~Le  224 (267)
                      .+|+.+||+||++||++|.+|++|||++ .|+||++||+.||+||++||.++.=||
T Consensus        10 ~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~   65 (71)
T 4h10_B           10 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE   65 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence            4699999999999999999999999975 699999999999999999999987654

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.52  E-value=1.4e-15  Score=111.73  Aligned_cols=53  Identities=17%  Similarity=0.388  Sum_probs=47.8

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHhccCCCC-------CCCChhhHHHHHHHHHHHHHHHHH
Q 043072          169 KDPQSVAARHRREMISERIRILQRIVPGG-------TKMDTASMLDEAIHYVKFLKKQVH  221 (267)
Q Consensus       169 k~~hs~aER~RRerIner~~~LrsLVP~~-------~K~DKaSIL~eAIdYIK~Lq~qVq  221 (267)
                      +..|..+||+||++||+.|..|++|||++       .|.+||+||+.||+||++||++|+
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            35699999999999999999999999954       567799999999999999998764

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.51  E-value=4.3e-15  Score=108.51  Aligned_cols=53  Identities=25%  Similarity=0.477  Sum_probs=48.5

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHhccCCCCC------CCChhhHHHHHHHHHHHHHHHHH
Q 043072          169 KDPQSVAARHRREMISERIRILQRIVPGGT------KMDTASMLDEAIHYVKFLKKQVH  221 (267)
Q Consensus       169 k~~hs~aER~RRerIner~~~LrsLVP~~~------K~DKaSIL~eAIdYIK~Lq~qVq  221 (267)
                      +..|+.+||+||++||++|..|++|||++.      |+||++||+.||+||++|+.+++
T Consensus         6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~   64 (65)
T 1an4_A            6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            356999999999999999999999999875      78999999999999999998753

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.48  E-value=4e-15  Score=112.53  Aligned_cols=50  Identities=26%  Similarity=0.424  Sum_probs=46.4

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHH
Q 043072          169 KDPQSVAARHRREMISERIRILQRIVPGG----TKMDTASMLDEAIHYVKFLKK  218 (267)
Q Consensus       169 k~~hs~aER~RRerIner~~~LrsLVP~~----~K~DKaSIL~eAIdYIK~Lq~  218 (267)
                      +..|+.+||+||++||++|.+|++|||.+    .|+||++||+.||+||+.|+.
T Consensus        10 R~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A           10 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence            35699999999999999999999999976    799999999999999999974

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.46  E-value=5.9e-14  Score=106.53  Aligned_cols=60  Identities=27%  Similarity=0.466  Sum_probs=55.5

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 043072          170 DPQSVAARHRREMISERIRILQRIVPGG--TKMDTASMLDEAIHYVKFLKKQVHTLEQAGAH  229 (267)
Q Consensus       170 ~~hs~aER~RRerIner~~~LrsLVP~~--~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~~  229 (267)
                      ..|+.+||+||..||+.|..|+++||.+  .|++|++||..||+||+.|+.++++|+.+...
T Consensus        14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~   75 (80)
T 1hlo_A           14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD   75 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3599999999999999999999999975  68999999999999999999999999987653

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.46  E-value=8.4e-14  Score=106.10  Aligned_cols=58  Identities=29%  Similarity=0.544  Sum_probs=53.7

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 043072          171 PQSVAARHRREMISERIRILQRIVPG--GTKMDTASMLDEAIHYVKFLKKQVHTLEQAGA  228 (267)
Q Consensus       171 ~hs~aER~RRerIner~~~LrsLVP~--~~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~  228 (267)
                      .|+..||+||++||+.|..|+++||.  +.|++|++||..||+||+.|+.+++.|+.+..
T Consensus         5 ~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~   64 (83)
T 1nkp_B            5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID   64 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999999997  48999999999999999999999988887654

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.42  E-value=1.9e-13  Score=106.20  Aligned_cols=57  Identities=19%  Similarity=0.284  Sum_probs=52.4

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 043072          171 PQSVAARHRREMISERIRILQRIVPGG---TKMDTASMLDEAIHYVKFLKKQVHTLEQAG  227 (267)
Q Consensus       171 ~hs~aER~RRerIner~~~LrsLVP~~---~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~  227 (267)
                      .|+..||+||+.||++|..|+++||..   .|++|++||..||+||++|+.+++.|+...
T Consensus         9 ~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~   68 (88)
T 1nkp_A            9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE   68 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999974   699999999999999999999988876643

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.35  E-value=4.2e-13  Score=102.03  Aligned_cols=56  Identities=25%  Similarity=0.297  Sum_probs=49.7

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCC---CCCC-ChhhHHHHHHHHHHHHHHHHHHHHH
Q 043072          170 DPQSVAARHRREMISERIRILQRIVPG---GTKM-DTASMLDEAIHYVKFLKKQVHTLEQ  225 (267)
Q Consensus       170 ~~hs~aER~RRerIner~~~LrsLVP~---~~K~-DKaSIL~eAIdYIK~Lq~qVq~Le~  225 (267)
                      ..|+..||+||+.||++|..|+.+||.   +.|. .|+.||..||+||++|++++++++.
T Consensus         7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~   66 (76)
T 3u5v_A            7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL   66 (76)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            359999999999999999999999994   4555 6899999999999999999998875

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.29  E-value=5.3e-12  Score=96.58  Aligned_cols=58  Identities=21%  Similarity=0.250  Sum_probs=53.1

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 043072          171 PQSVAARHRREMISERIRILQRIVPGG---TKMDTASMLDEAIHYVKFLKKQVHTLEQAGA  228 (267)
Q Consensus       171 ~hs~aER~RRerIner~~~LrsLVP~~---~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~  228 (267)
                      .|+..||+||..||++|..|+++||.+   .|.+|++||..|++||+.|+.+.+.|+....
T Consensus         4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~   64 (80)
T 1nlw_A            4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQID   64 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            499999999999999999999999954   6889999999999999999999998887643

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.01  E-value=2.4e-10  Score=105.14  Aligned_cols=51  Identities=22%  Similarity=0.462  Sum_probs=42.4

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHhccCC-CCCCCChhhHHHHHHHHHHHHHHH
Q 043072          169 KDPQSVAARHRREMISERIRILQRIVP-GGTKMDTASMLDEAIHYVKFLKKQ  219 (267)
Q Consensus       169 k~~hs~aER~RRerIner~~~LrsLVP-~~~K~DKaSIL~eAIdYIK~Lq~q  219 (267)
                      +.+|+.+||+||++||+.|.+|++||| ...|+||++||..||+|||.|+..
T Consensus        13 ~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~   64 (361)
T 4f3l_A           13 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET   64 (361)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence            346999999999999999999999999 457999999999999999999764

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=98.99  E-value=1.4e-10  Score=86.54  Aligned_cols=51  Identities=20%  Similarity=0.385  Sum_probs=47.0

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 043072          171 PQSVAARHRREMISERIRILQRIVPG--GTKMDTASMLDEAIHYVKFLKKQVH  221 (267)
Q Consensus       171 ~hs~aER~RRerIner~~~LrsLVP~--~~K~DKaSIL~eAIdYIK~Lq~qVq  221 (267)
                      .|+..||+|+..||+.|..||.+||.  +.|++|+.||..||+||..|++.++
T Consensus        15 ~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~   67 (68)
T 1mdy_A           15 AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            48999999999999999999999996  4789999999999999999998653

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.91  E-value=1.5e-09  Score=78.95  Aligned_cols=50  Identities=20%  Similarity=0.313  Sum_probs=46.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHhccCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 043072          172 QSVAARHRREMISERIRILQRIVPG---GTKMDTASMLDEAIHYVKFLKKQVH  221 (267)
Q Consensus       172 hs~aER~RRerIner~~~LrsLVP~---~~K~DKaSIL~eAIdYIK~Lq~qVq  221 (267)
                      ++..||+|+..||+.|..||.+||.   ..|+.|+.+|..||+||+.|++.++
T Consensus         6 ~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            6 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            7889999999999999999999995   4689999999999999999998764

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.89  E-value=5e-10  Score=104.44  Aligned_cols=51  Identities=25%  Similarity=0.423  Sum_probs=47.1

Q ss_pred             CCCcccHHHHHHHHHHHHHHHHHhccCC----CCCCCChhhHHHHHHHHHHHHHH
Q 043072          168 SKDPQSVAARHRREMISERIRILQRIVP----GGTKMDTASMLDEAIHYVKFLKK  218 (267)
Q Consensus       168 sk~~hs~aER~RRerIner~~~LrsLVP----~~~K~DKaSIL~eAIdYIK~Lq~  218 (267)
                      .+++|+.+||+||++||+.|.+|++|||    ...|+||++||..||+|||.|+.
T Consensus        13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~   67 (387)
T 4f3l_B           13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   67 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred             hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence            3457999999999999999999999999    56899999999999999999874

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.51  E-value=1.6e-07  Score=72.84  Aligned_cols=47  Identities=19%  Similarity=0.475  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 043072          180 REMISERIRILQRIVPGG----TKMDTASMLDEAIHYVKFLKKQVHTLEQA  226 (267)
Q Consensus       180 RerIner~~~LrsLVP~~----~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~  226 (267)
                      |..||++|.+|..|||.+    .|.+|++||..|||||+.||..++.+.+.
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~   54 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL   54 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999975    46889999999999999998877665543

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.47  E-value=3.9e-08  Score=73.69  Aligned_cols=45  Identities=22%  Similarity=0.375  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCC---CCCCChhhHHHHHHHHHHHHHH
Q 043072          174 VAARHRREMISERIRILQRIVPG---GTKMDTASMLDEAIHYVKFLKK  218 (267)
Q Consensus       174 ~aER~RRerIner~~~LrsLVP~---~~K~DKaSIL~eAIdYIK~Lq~  218 (267)
                      ..||+|+..||+.|..||.+||.   ..|+.|..+|..||+||..||.
T Consensus        20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            35899999999999999999995   4789999999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=97.96  E-value=1.2e-05  Score=63.79  Aligned_cols=49  Identities=16%  Similarity=0.235  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHhccCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 043072          176 ARHRREMISERIRILQRIVPG---GTKMDTASMLDEAIHYVKFLKKQVHTLE  224 (267)
Q Consensus       176 ER~RRerIner~~~LrsLVP~---~~K~DKaSIL~eAIdYIK~Lq~qVq~Le  224 (267)
                      ||.|-..||+.|..||.+||.   ..|+.|..+|.-||+||+.|+..++.-.
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~   84 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL   84 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            578888999999999999995   4689999999999999999998876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	267
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	5e-14
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	6e-11
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	2e-10
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	4e-10
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	7e-10
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	8e-09
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	5e-08
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	5e-08

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (153), Expect = 5e-14
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 180 REMISERIRILQRIVPGGT-KMDTASMLDEAIHYVKFLKKQVHTLEQ 225
           R  I+++I  L+ +V G   KM  + +L +AI Y+K+L++  H L Q
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQ 47

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (132), Expect = 6e-11
 Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 167 ISKDPQSVAARHRREMISERIRILQRIVPG-------GTKMDTASMLDEAIHYVKFLKKQ 219
           + ++    A + RR  ++  +  L  ++P              A+ ++ A  Y++ L++ 
Sbjct: 1   MKRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQN 60

Query: 220 VHT 222
             T
Sbjct: 61  GST 63

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 177 RHRREMISERIRILQRIVPG--GTKMDTASMLDEAIHYVKFLKKQVHTLEQ 225
           R RR+ I +    L+  VP   G K   A +LD+A  Y+++++++ HT +Q
Sbjct: 11  RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 4e-10
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 162 RRNVKISKDPQSVAARHRREMISERIRILQRIVP---GGTKMDTASMLDEAIHYVKFLKK 218
             NVK  +   +V  R RR  +      L+  +P      K     +L +A  Y+  ++ 
Sbjct: 2   HMNVK--RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQA 59

Query: 219 QVHTLEQ 225
           +   L  
Sbjct: 60  EEQKLIS 66

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (125), Expect = 7e-10
 Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 169 KDPQSVAARHRREMISERIRILQRIVPGG-TKMDTASMLDEAIHYVKFLKKQVHTLEQ 225
           +   +   +  R  I+++I  L+ +V G   K++ +++L +AI Y++FL+     L+Q
Sbjct: 7   RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 8e-09
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 177 RHRREMISERIRILQRIVPGG---TKMDTASMLDEAIHYVKFLKKQVHTLEQ 225
           ++RR  +   +  L+ +VP G   ++  T S+L +A  ++K L+        
Sbjct: 10  KNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (111), Expect = 5e-08
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 177 RHRREMISERIRILQRIVP------GGTKMDTASMLDEAIHYVKFLKKQVH 221
           R RR+ I+  I  L +I+P        +      +L +A  Y++ L++  H
Sbjct: 14  RRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.8 bits (111), Expect = 5e-08
 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 161 KRRNVKISK-DPQSVAARHRREMISERIRILQRIVPG--GTKMDTASMLDEAIHYVKFLK 217
           KR+     +    ++  R R   ++E    L+R        ++    +L  AI Y++ L+
Sbjct: 4   KRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQ 63

Query: 218 KQVH 221
             + 
Sbjct: 64  ALLR 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	267
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.51
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.45
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.41
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.38

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=8.5e-15  Score=109.38  Aligned_cols=58  Identities=26%  Similarity=0.509  Sum_probs=54.5

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 043072          171 PQSVAARHRREMISERIRILQRIVPGG-TKMDTASMLDEAIHYVKFLKKQVHTLEQAGA  228 (267)
Q Consensus       171 ~hs~aER~RRerIner~~~LrsLVP~~-~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~  228 (267)
                      .|+.+||+||++||+.|..|++|||++ .|+||++||+.||+||++|+.+++.|+.+..
T Consensus         9 ~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~   67 (80)
T d1am9a_           9 AHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENL   67 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999986 6899999999999999999999999987654

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=4.7e-15  Score=106.50  Aligned_cols=51  Identities=18%  Similarity=0.395  Sum_probs=47.4

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCC-------CCCCChhhHHHHHHHHHHHHHHHH
Q 043072          170 DPQSVAARHRREMISERIRILQRIVPG-------GTKMDTASMLDEAIHYVKFLKKQV  220 (267)
Q Consensus       170 ~~hs~aER~RRerIner~~~LrsLVP~-------~~K~DKaSIL~eAIdYIK~Lq~qV  220 (267)
                      ..|+.+||+||++||+.|..|++|||+       +.|+||+.||+.||+||++|+++|
T Consensus         4 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            459999999999999999999999994       478999999999999999999875

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.8e-14  Score=106.93  Aligned_cols=59  Identities=20%  Similarity=0.249  Sum_probs=53.7

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 043072          170 DPQSVAARHRREMISERIRILQRIVPGG---TKMDTASMLDEAIHYVKFLKKQVHTLEQAGA  228 (267)
Q Consensus       170 ~~hs~aER~RRerIner~~~LrsLVP~~---~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~  228 (267)
                      ..|+.+||+||++||++|..|+++||++   .|.+|++||+.||+||++|+.+++.|+....
T Consensus         3 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~   64 (79)
T d1nlwa_           3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQID   64 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3599999999999999999999999964   5799999999999999999999999877643

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=2.3e-14  Score=104.59  Aligned_cols=52  Identities=19%  Similarity=0.381  Sum_probs=48.1

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 043072          170 DPQSVAARHRREMISERIRILQRIVPGG--TKMDTASMLDEAIHYVKFLKKQVH  221 (267)
Q Consensus       170 ~~hs~aER~RRerIner~~~LrsLVP~~--~K~DKaSIL~eAIdYIK~Lq~qVq  221 (267)
                      ..|+..||+||++||+.|..|++|||++  .|+||++||+.||+||++|++.|+
T Consensus        14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            3599999999999999999999999985  689999999999999999998765

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.2e-13  Score=103.37  Aligned_cols=58  Identities=29%  Similarity=0.544  Sum_probs=53.5

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 043072          171 PQSVAARHRREMISERIRILQRIVPG--GTKMDTASMLDEAIHYVKFLKKQVHTLEQAGA  228 (267)
Q Consensus       171 ~hs~aER~RRerIner~~~LrsLVP~--~~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~  228 (267)
                      .|+.+||+||++||+.|..|++|||+  +.|++|++||..||+||++|+.+++.|+....
T Consensus         5 ~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~   64 (83)
T d1nkpb_           5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID   64 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            49999999999999999999999996  47899999999999999999999998887654

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.1e-13  Score=104.59  Aligned_cols=58  Identities=19%  Similarity=0.277  Sum_probs=53.3

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 043072          171 PQSVAARHRREMISERIRILQRIVPGG---TKMDTASMLDEAIHYVKFLKKQVHTLEQAGA  228 (267)
Q Consensus       171 ~hs~aER~RRerIner~~~LrsLVP~~---~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~  228 (267)
                      .|+.+||+||++||+.|..|+++||++   .|++|++||..||+||+.|+.+++.|+....
T Consensus         9 ~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~   69 (88)
T d1nkpa_           9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEED   69 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999964   6799999999999999999999999877544

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.3e-14  Score=101.61  Aligned_cols=49  Identities=35%  Similarity=0.586  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 043072          180 REMISERIRILQRIVPGG-TKMDTASMLDEAIHYVKFLKKQVHTLEQAGA  228 (267)
Q Consensus       180 RerIner~~~LrsLVP~~-~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~  228 (267)
                      |++||++|..|++|||++ .|+||++||.+||+||++|+.++++|+++..
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~   50 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENM   50 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999987 5999999999999999999999999988764

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.8e-14  Score=101.26  Aligned_cols=51  Identities=24%  Similarity=0.439  Sum_probs=46.6

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC------CCCChhhHHHHHHHHHHHHHHHH
Q 043072          170 DPQSVAARHRREMISERIRILQRIVPGG------TKMDTASMLDEAIHYVKFLKKQV  220 (267)
Q Consensus       170 ~~hs~aER~RRerIner~~~LrsLVP~~------~K~DKaSIL~eAIdYIK~Lq~qV  220 (267)
                      ..|+.+||+||++||+.|..|++|||.+      .|++|++||..||+||++||++.
T Consensus         7 ~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           7 AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            4599999999999999999999999964      48999999999999999998764