Citrus Sinensis ID: 043126

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-------
Protein Sequence
MPTPKYYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKTSDLPPMSC
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccccccccccccc
Coil and Loop (DISEMBL)
mptpkyylsasHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIfgsrvfnksspppktsdlppmsc
Flexible Loop (DISEMBL)
MPTPKYYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNksspppktsdlppmsc
Low Complexity Region (SEG)
MPTPKYYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKTSDLPPMSC
Disordered region (IsUnstruct)
*****YYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVF*****************
Disordered Region (DISOPRED)
***PKYYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGS**************LPPMSC
Disordered Region (DISEMBL)
MPTPKYYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKS**************
Disordered Region (DISPRO)
MPTPKYYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFN****************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPTPKYYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKTSDLPPMSC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	67	2.2.26 [Sep-21-2011]
Q39065	170	Copper transporter 1 OS=A	yes	no	0.835	0.329	0.535	3e-11
Q9STG2	158	Copper transporter 2 OS=A	no	no	0.716	0.303	0.604	8e-10
Q9FGU8	151	Copper transporter 3 OS=A	no	no	0.850	0.377	0.5	2e-07
Q8GWP3	145	Copper transporter 6 OS=A	no	no	0.626	0.289	0.595	8e-07
Q60EN8	151	Copper transporter 2 OS=O	yes	no	0.865	0.384	0.45	3e-06
Q94EE4	161	Copper transporter 1 OS=O	no	no	0.835	0.347	0.446	7e-06
Q7XTF8	184	Copper transporter 6 OS=O	no	no	0.597	0.217	0.575	3e-05
Q10KT6	183	Copper transporter 4 OS=O	no	no	0.731	0.267	0.448	5e-05
Q8SAA5	145	Copper transporter 4 OS=A	no	no	0.567	0.262	0.526	0.0001

>sp|Q39065|COPT1_ARATH Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 39/56 (69%)

Query: 12  HVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKTSDLPPMSC 67
            +   +LVMLA+MSFN GVFLVA+AGH  GF +FGS+ F  +S   KT+ +PP  C
Sbjct: 113 RIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDDRKTNYVPPSGC 168

Copper transporter involved in copper acquisition and transport in leaves. Required for copper homeostasis and normal plant growth and development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9STG2|COPT2_ARATH Copper transporter 2 OS=Arabidopsis thaliana GN=COPT2 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 37/48 (77%)

Query: 17  FLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKTSDLPP 64
           +LVMLA+MSFN GVF+VA+AG+  GFF+FGS  F K S   KT++L P
Sbjct: 104 YLVMLAVMSFNAGVFIVAIAGYGVGFFLFGSTTFKKPSDDQKTAELLP 151

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGU8|COPT3_ARATH Copper transporter 3 OS=Arabidopsis thaliana GN=COPT3 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 1   MPTPKYYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKTS 60
           + T  Y + A   A  +LVMLA+MSFNGGVF+ A+AG   GF IFGSR F  +S    T 
Sbjct: 90  LQTAVYTVRA---ALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSRAFRATSSNSHTE 146

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWP3|COPT6_ARATH Copper transporter 6 OS=Arabidopsis thaliana GN=COPT6 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 30/42 (71%)

Query: 17  FLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPK 58
           +LVMLA+MSFNGGVF+VA+AG   GF +FGS  F   S   K
Sbjct: 99  YLVMLAVMSFNGGVFIVAIAGFAVGFMLFGSTAFKNPSDDEK 140

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q60EN8|COPT2_ORYSJ Copper transporter 2 OS=Oryza sativa subsp. japonica GN=COPT2 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 10  ASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKTSDLP--PMSC 67
           A  V   +L+MLA+MSFNGGVFL  VAGH  GF  F + +      PP   D    P+ C
Sbjct: 92  AVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAFRAGLCGGGPAPPLEEDRKNDPVCC 151

Involved in the transport of copper, in cooperation with SWEET11 and COPT1. Contributes to the removal of copper (Cu) from xylem, and thus to the sensitivity toward bacterial pathogens such as X.oryzae pv. oryzae (Xoo).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94EE4|COPT1_ORYSJ Copper transporter 1 OS=Oryza sativa subsp. japonica GN=COPT1 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 32/56 (57%)

Query: 12  HVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKTSDLPPMSC 67
            V   +L+MLA+MSFNGGVFLVAVAGH  GF  F + +    +   +     P  C
Sbjct: 106 RVGVAYLLMLALMSFNGGVFLVAVAGHAAGFLAFRAGLCGGPAQVEEDRKNDPACC 161

Involved in the transport of copper, in cooperation with SWEET11 and COPT2. Contributes to the removal of copper (Cu) from xylem, and thus to the sensitivity toward bacterial pathogens such as X.oryzae pv. oryzae (Xoo).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XTF8|COPT6_ORYSJ Copper transporter 6 OS=Oryza sativa subsp. japonica GN=COPT6 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 28/40 (70%)

Query: 10  ASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRV 49
           A+ +   +LVMLA+MSFN GV L AVAGH  GF +  SRV
Sbjct: 119 AARMGMAYLVMLAVMSFNVGVLLAAVAGHALGFLLARSRV 158

Involved in the transport of copper.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10KT6|COPT4_ORYSJ Copper transporter 4 OS=Oryza sativa subsp. japonica GN=COPT4 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%)

Query: 10  ASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPK 58
           A+ +   +LVMLA+MSFN GV L AVAGH  GF +  S +    +  P+
Sbjct: 110 AARMGLAYLVMLAVMSFNAGVLLAAVAGHAAGFLLARSGLLGSRAAAPE 158

Involved in the transport of copper.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8SAA5|COPT4_ARATH Copper transporter 4 OS=Arabidopsis thaliana GN=COPT4 PE=2 SV=2

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 17  FLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSS 54
           +LV+LA++SFNGGVFL A+ GH  GF +F  R F    
Sbjct: 106 YLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAFRNRD 143

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
255558892	140	copper transporter, putative [Ricinus co	0.940	0.45	0.682	6e-16
224104361	162	copper transporter [Populus trichocarpa]	0.895	0.370	0.683	5e-15
224104365	155	copper transporter [Populus trichocarpa]	0.880	0.380	0.655	6e-13
225434744	173	PREDICTED: copper transporter 1 [Vitis v	0.835	0.323	0.627	5e-12
297745977	133	unnamed protein product [Vitis vinifera]	0.835	0.421	0.627	6e-12
225434746	164	PREDICTED: copper transporter 1 [Vitis v	0.820	0.335	0.603	7e-12
449455066	159	PREDICTED: copper transporter 1-like iso	0.820	0.345	0.589	3e-10
1082054	169	copper transporter protein [Arabidopsis	0.835	0.331	0.535	1e-09
15237802	170	copper transporter 1 [Arabidopsis thalia	0.835	0.329	0.535	1e-09
297745980	160	unnamed protein product [Vitis vinifera]	0.865	0.362	0.506	1e-09

>gi|255558892|ref|XP_002520469.1| copper transporter, putative [Ricinus communis] gi|223540311|gb|EEF41882.1| copper transporter, putative [Ricinus communis]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 47/63 (74%)

Query: 5   KYYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKTSDLPP 64
           +  L    V   +LVMLA+MSFNGGVFLVAVAGH  GF IFGSRVF K+ P  KTSDLPP
Sbjct: 78  QTLLHTMRVGLAYLVMLAVMSFNGGVFLVAVAGHCLGFLIFGSRVFKKTPPAAKTSDLPP 137

Query: 65  MSC 67
           MSC
Sbjct: 138 MSC 140

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104361|ref|XP_002313411.1| copper transporter [Populus trichocarpa] gi|118485983|gb|ABK94836.1| unknown [Populus trichocarpa] gi|222849819|gb|EEE87366.1| copper transporter [Populus trichocarpa]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 45/60 (75%)

Query: 8   LSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKTSDLPPMSC 67
           L A  V   ++VMLAIMSFNGGVFL AVAGHT GF  FGSRVF ++  P KTSDLPP SC
Sbjct: 103 LHALRVGLAYMVMLAIMSFNGGVFLAAVAGHTLGFLFFGSRVFKRTQNPAKTSDLPPSSC 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104365|ref|XP_002313412.1| copper transporter [Populus trichocarpa] gi|222849820|gb|EEE87367.1| copper transporter [Populus trichocarpa]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 46/61 (75%), Gaps = 2/61 (3%)

Query: 8   LSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPP--KTSDLPPM 65
           + A  V   ++VMLA+MSFNGGVF+VAVAGH  GFFIFGSRVF  +  PP  KTSDLPP 
Sbjct: 94  MHAVRVGLAYMVMLAVMSFNGGVFIVAVAGHLVGFFIFGSRVFKDTEMPPYHKTSDLPPT 153

Query: 66  S 66
           S
Sbjct: 154 S 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434744|ref|XP_002280088.1| PREDICTED: copper transporter 1 [Vitis vinifera] gi|321496082|gb|ADW93918.1| copper transporter [Vitis vinifera]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 44/59 (74%), Gaps = 3/59 (5%)

Query: 12  HVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSS---PPPKTSDLPPMSC 67
            V   +LVMLA+MSFN GVFLVA+AG+T GF +FGSRVF  SS   P  K SDLPP++C
Sbjct: 115 RVGLAYLVMLAVMSFNVGVFLVAIAGYTTGFLLFGSRVFRDSSEMLPYEKASDLPPLNC 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745977|emb|CBI16033.3| unnamed protein product [Vitis vinifera]

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 44/59 (74%), Gaps = 3/59 (5%)

Query: 12  HVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSS---PPPKTSDLPPMSC 67
            V   +LVMLA+MSFN GVFLVA+AG+T GF +FGSRVF  SS   P  K SDLPP++C
Sbjct: 75  RVGLAYLVMLAVMSFNVGVFLVAIAGYTTGFLLFGSRVFRDSSEMLPYEKASDLPPLNC 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434746|ref|XP_002280103.1| PREDICTED: copper transporter 1 [Vitis vinifera] gi|321496080|gb|ADW93917.1| copper transporter [Vitis vinifera]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 43/58 (74%), Gaps = 3/58 (5%)

Query: 13  VAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKTS---DLPPMSC 67
           V   ++VMLA+MSFN G+F+VAVAGH  GFF+FGSRVF   SP P+ +   DLP MSC
Sbjct: 107 VGLAYMVMLALMSFNAGIFIVAVAGHCLGFFLFGSRVFRNKSPAPQRNSAPDLPSMSC 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455066|ref|XP_004145274.1| PREDICTED: copper transporter 1-like isoform 1 [Cucumis sativus] gi|449471163|ref|XP_004153227.1| PREDICTED: copper transporter 1-like isoform 1 [Cucumis sativus] gi|449510896|ref|XP_004163804.1| PREDICTED: copper transporter 1-like isoform 1 [Cucumis sativus]

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 41/56 (73%), Gaps = 1/56 (1%)

Query: 13  VAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSP-PPKTSDLPPMSC 67
           V   +LVMLA+MSFN GV LVA+ GH  GFF+FGS+ F +S     K+SDLPP+SC
Sbjct: 104 VGLAYLVMLAVMSFNVGVLLVAIGGHCLGFFLFGSKFFKRSEAVSGKSSDLPPLSC 159

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1082054|emb|CAA90018.1| copper transporter protein [Arabidopsis thaliana]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 39/56 (69%)

Query: 12  HVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKTSDLPPMSC 67
            +   +LVMLA+MSFN GVFLVA+AGH  GF +FGS+ F  +S   KT+ +PP  C
Sbjct: 112 RIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDDRKTNYVPPSGC 167

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237802|ref|NP_200711.1| copper transporter 1 [Arabidopsis thaliana] gi|12230995|sp|Q39065.2|COPT1_ARATH RecName: Full=Copper transporter 1; Short=AtCOPT1 gi|18496858|gb|AAL74265.1|AF466373_1 copper transporter COPT1 [Arabidopsis thaliana] gi|10177631|dbj|BAB10779.1| copper transporter-like protein [Arabidopsis thaliana] gi|20258855|gb|AAM13909.1| putative copper transport protein [Arabidopsis thaliana] gi|21689855|gb|AAM67571.1| putative copper transport protein [Arabidopsis thaliana] gi|110741978|dbj|BAE98928.1| copper transport protein [Arabidopsis thaliana] gi|332009749|gb|AED97132.1| copper transporter 1 [Arabidopsis thaliana]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 39/56 (69%)

Query: 12  HVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKTSDLPPMSC 67
            +   +LVMLA+MSFN GVFLVA+AGH  GF +FGS+ F  +S   KT+ +PP  C
Sbjct: 113 RIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDDRKTNYVPPSGC 168

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745980|emb|CBI16036.3| unnamed protein product [Vitis vinifera]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 46/75 (61%), Gaps = 17/75 (22%)

Query: 10  ASHVAAG--------------FLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSS- 54
           ++HVAAG              ++VMLA+MSFNGG+FLVAVAGH  GF +FGSR+F  S  
Sbjct: 86  STHVAAGVVQTLLHAIRMGLEYMVMLALMSFNGGMFLVAVAGHAVGFLVFGSRLFRGSET 145

Query: 55  --PPPKTSDLPPMSC 67
             P  K   L PMSC
Sbjct: 146 LRPSEKAFYLSPMSC 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
TAIR|locus:2153306	170	COPT1 "copper transporter 1" [	0.820	0.323	0.545	2.4e-12
TAIR|locus:2102752	158	COPT2 "copper transporter 2" [	0.746	0.316	0.607	1.7e-11
TAIR|locus:2153311	151	COPT3 "copper transporter 3" [	0.611	0.271	0.634	5.9e-09
TAIR|locus:504955951	145	COPT6 "copper transporter 6" [	0.626	0.289	0.595	9.7e-09
UNIPROTKB|Q60EN8	151	COPT2 "Copper transporter 2" [	0.865	0.384	0.45	4.2e-08
UNIPROTKB|Q94EE4	161	COPT1 "Copper transporter 1" [	0.492	0.204	0.696	1.8e-07
TAIR|locus:504955905	145	COPT4 "copper transporter 4" [	0.567	0.262	0.575	4.8e-07
TAIR|locus:2180474	146	COPT5 "copper transporter 5" [	0.537	0.246	0.555	1.1e-05
GENEDB_PFALCIPARUM|PF14_0369	235	PF14_0369 "hypothetical protei	0.686	0.195	0.413	2.6e-05
UNIPROTKB|Q8IL79	235	PF14_0369 "Copper transporter	0.686	0.195	0.413	2.6e-05

TAIR|locus:2153306 COPT1 "copper transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 30/55 (54%), Positives = 39/55 (70%)

Query:    13 VAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKTSDLPPMSC 67
             +   +LVMLA+MSFN GVFLVA+AGH  GF +FGS+ F  +S   KT+ +PP  C
Sbjct:   114 IGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDDRKTNYVPPSGC 168

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;IGI;ISS

GO:0006825 "copper ion transport" evidence=IGI;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0048235 "pollen sperm cell differentiation" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2102752 COPT2 "copper transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 31/51 (60%), Positives = 39/51 (76%)

Query:    17 FLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKTSDL-PPMS 66
             +LVMLA+MSFN GVF+VA+AG+  GFF+FGS  F K S   KT++L PP S
Sbjct:   104 YLVMLAVMSFNAGVFIVAIAGYGVGFFLFGSTTFKKPSDDQKTAELLPPSS 154

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

GO:0015678 "high-affinity copper ion transport" evidence=IGI

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:2153311 COPT3 "copper transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 26/41 (63%), Positives = 31/41 (75%)

Query:    14 AAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSS 54
             A  +LVMLA+MSFNGGVF+ A+AG   GF IFGSR F  +S
Sbjct:   100 ALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSRAFRATS 140

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

TAIR|locus:504955951 COPT6 "copper transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 25/42 (59%), Positives = 30/42 (71%)

Query:    17 FLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPK 58
             +LVMLA+MSFNGGVF+VA+AG   GF +FGS  F   S   K
Sbjct:    99 YLVMLAVMSFNGGVFIVAIAGFAVGFMLFGSTAFKNPSDDEK 140

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

UNIPROTKB|Q60EN8 COPT2 "Copper transporter 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 27/60 (45%), Positives = 33/60 (55%)

Query:    10 ASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKTSDLP--PMSC 67
             A  V   +L+MLA+MSFNGGVFL  VAGH  GF  F + +      PP   D    P+ C
Sbjct:    92 AVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAFRAGLCGGGPAPPLEEDRKNDPVCC 151

GO:0005375 "copper ion transmembrane transporter activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006825 "copper ion transport" evidence=IMP

GO:0043621 "protein self-association" evidence=IDA

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

UNIPROTKB|Q94EE4 COPT1 "Copper transporter 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 23/33 (69%), Positives = 26/33 (78%)

Query:    13 VAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIF 45
             V   +L+MLA+MSFNGGVFLVAVAGH  GF  F
Sbjct:   107 VGVAYLLMLALMSFNGGVFLVAVAGHAAGFLAF 139

GO:0005375 "copper ion transmembrane transporter activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006825 "copper ion transport" evidence=IMP

GO:0043621 "protein self-association" evidence=IDA

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

TAIR|locus:504955905 COPT4 "copper transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 23/40 (57%), Positives = 29/40 (72%)

Query:    13 VAAGF--LVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVF 50
             V +GF  LV+LA++SFNGGVFL A+ GH  GF +F  R F
Sbjct:   100 VKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAF 139

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

TAIR|locus:2180474 COPT5 "copper transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 20/36 (55%), Positives = 26/36 (72%)

Query:    12 HVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGS 47
             + A G+L+MLA MSFNGGVF+  V G T G+ +F S
Sbjct:    95 NAAIGYLLMLAAMSFNGGVFIAIVVGLTAGYAVFRS 130

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0015680 "intracellular copper ion transport" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GENEDB_PFALCIPARUM|PF14_0369 PF14_0369 "hypothetical protein" [Plasmodium falciparum (taxid:5833)]

 Score = 103 (41.3 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query:    17 FLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKTSDL 62
             +L+ML +M+FN G+F+  V G +FGFFIFG++  +     P   D+
Sbjct:   177 YLLMLIVMTFNVGLFVAVVLGLSFGFFIFGNKFVSSKKCSPDDLDV 222

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|Q8IL79 PF14_0369 "Copper transporter putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 103 (41.3 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query:    17 FLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKTSDL 62
             +L+ML +M+FN G+F+  V G +FGFFIFG++  +     P   D+
Sbjct:   177 YLLMLIVMTFNVGLFVAVVLGLSFGFFIFGNKFVSSKKCSPDDLDV 222

GO:0020011 "apicoplast" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	67
pfam04145	102	pfam04145, Ctr, Ctr copper transporter family	3e-09

>gnl|CDD|217925 pfam04145, Ctr, Ctr copper transporter family

 Score = 47.9 bits (115), Expect = 3e-09
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 8   LSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIF 45
           L    V   +L+ML +M++NGG+FL  V G   G+F+F
Sbjct: 65  LHFLQVGLSYLLMLIVMTYNGGLFLAVVLGAALGYFLF 102

The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionine probably coordinate copper during the process of metal transport. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	67
KOG3386	155	consensus Copper transporter [Inorganic ion transp	99.81
PF04145	144	Ctr: Ctr copper transporter family; InterPro: IPR0	99.79
PF11446	55	DUF2897: Protein of unknown function (DUF2897); In	93.4
COG2991	77	Uncharacterized protein conserved in bacteria [Fun	85.22

>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]

Probab=99.81  E-value=5.5e-20  Score=124.81  Aligned_cols=54  Identities=33%  Similarity=0.618  Sum_probs=50.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHhhccccccCCCCC
Q 043126            2 PTPKYYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPP   56 (67)
Q Consensus         2 ~lira~l~~~q~~i~Y~LMLivMTfN~~~~isvv~G~~~G~~~Fg~~~~~~~~~~   56 (67)
                      +++|+++|.+|++++|+|||++||||+|+++|+++|+++||++|+++.. .+.++
T Consensus        95 h~~qt~l~~~Q~~~sY~LMLifMtfN~~l~Lavv~Ga~~G~flF~~~~~-~~~~~  148 (155)
T KOG3386|consen   95 HLIQTLLYVVQLGFSYLLMLIFMTFNGYLFLAVVLGAGVGYFLFGSLTF-TPTSE  148 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhheeeeccc-cCCCc
Confidence            6899999999999999999999999999999999999999999999998 44433

>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation

Probab=99.79  E-value=4.2e-20  Score=118.54  Aligned_cols=44  Identities=32%  Similarity=0.635  Sum_probs=39.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHhh
Q 043126            2 PTPKYYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIF   45 (67)
Q Consensus         2 ~lira~l~~~q~~i~Y~LMLivMTfN~~~~isvv~G~~~G~~~F   45 (67)
                      +++|+++|++|++++|+|||+|||||+|+++||++|.++||++|
T Consensus       101 ~~~~~~l~~~~~~l~Y~LMLvvMTyN~~l~~aVv~G~~~G~~~F  144 (144)
T PF04145_consen  101 HLIRALLHFVQVLLGYLLMLVVMTYNVYLFIAVVLGAGLGYFLF  144 (144)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHTT--SSSHHHHHHTTSS-GG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhheeHHHHHHHHHHHHHheeeC
Confidence            57899999999999999999999999999999999999999998

A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.

>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins

Probab=93.40  E-value=0.059  Score=31.32  Aligned_cols=28  Identities=18%  Similarity=0.122  Sum_probs=23.6

Q ss_pred             HhhhhHHHHHHHHHHHhhHHhhcccccc
Q 043126           24 MSFNGGVFLVAVAGHTFGFFIFGSRVFN   51 (67)
Q Consensus        24 MTfN~~~~isvv~G~~~G~~~Fg~~~~~   51 (67)
                      |+.|+|+++.+++|..+|...-=+...+
T Consensus         1 ~~~~~wlIIviVlgvIigNia~LK~sAk   28 (55)
T PF11446_consen    1 STWNPWLIIVIVLGVIIGNIAALKYSAK   28 (55)
T ss_pred             CcchhhHHHHHHHHHHHhHHHHHHHhcc
Confidence            6889999999999999999887555443

>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.22  E-value=0.92  Score=28.22  Aligned_cols=25  Identities=36%  Similarity=0.756  Sum_probs=19.3

Q ss_pred             hHHHHHHHHHHHhhHHhhccccccCC
Q 043126           28 GGVFLVAVAGHTFGFFIFGSRVFNKS   53 (67)
Q Consensus        28 ~~~~isvv~G~~~G~~~Fg~~~~~~~   53 (67)
                      .++|+.+++|..+|| +|+++.+..+
T Consensus         8 Fg~Fllvi~gMsiG~-I~krk~I~GS   32 (77)
T COG2991           8 FGIFLLVIAGMSIGY-IFKRKSIKGS   32 (77)
T ss_pred             HHHHHHHHHHHhHhh-heeccccccc
Confidence            467889999999999 6677766443

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	67
2ls3_A	29	High affinity copper uptake protein 1; HCTR1 TMDS,	99.03
2ls4_A	26	High affinity copper uptake protein 1; HCTR1 TMDS,	98.24

>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}

Probab=99.03  E-value=8.7e-14  Score=71.61  Aligned_cols=27  Identities=22%  Similarity=0.375  Sum_probs=26.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhh
Q 043126            2 PTPKYYLSASHVAAGFLVMLAIMSFNG   28 (67)
Q Consensus         2 ~lira~l~~~q~~i~Y~LMLivMTfN~   28 (67)
                      +++||++|++|.++||+|||++||||+
T Consensus         2 h~~ra~l~~~q~~~~Y~LML~~MtyN~   28 (29)
T 2ls3_A            2 HLLQTVLHIIQVVISYFLMLIFMTYNK   28 (29)
Confidence            689999999999999999999999997

>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}

Probab=98.24  E-value=8.4e-10  Score=55.50  Aligned_cols=24  Identities=29%  Similarity=0.654  Sum_probs=22.9

Q ss_pred             hhhHHHHHHHHHHHhhHHhhcccc
Q 043126           26 FNGGVFLVAVAGHTFGFFIFGSRV   49 (67)
Q Consensus        26 fN~~~~isvv~G~~~G~~~Fg~~~   49 (67)
                      ||+|+++||++|+++|||+|++++
T Consensus         1 YNg~l~iavvlGa~~Gyf~F~~~~   24 (26)
T 2ls4_A            1 YNGYLCIAVAAGAGTGYFLFSWKK   24 (26)
Confidence            899999999999999999999875

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00