Citrus Sinensis ID: 043137
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 445 | 2.2.26 [Sep-21-2011] | |||||||
| P42896 | 445 | Enolase OS=Ricinus commun | N/A | no | 1.0 | 1.0 | 0.930 | 0.0 | |
| Q9LEI9 | 445 | Enolase 2 OS=Hevea brasil | N/A | no | 1.0 | 1.0 | 0.919 | 0.0 | |
| Q9LEJ0 | 445 | Enolase 1 OS=Hevea brasil | N/A | no | 1.0 | 1.0 | 0.916 | 0.0 | |
| Q42971 | 446 | Enolase OS=Oryza sativa s | yes | no | 1.0 | 0.997 | 0.878 | 0.0 | |
| P26300 | 444 | Enolase OS=Solanum lycope | N/A | no | 0.993 | 0.995 | 0.886 | 0.0 | |
| P42895 | 446 | Enolase 2 OS=Zea mays GN= | N/A | no | 1.0 | 0.997 | 0.881 | 0.0 | |
| P26301 | 446 | Enolase 1 OS=Zea mays GN= | N/A | no | 1.0 | 0.997 | 0.892 | 0.0 | |
| Q43130 | 444 | Enolase OS=Mesembryanthem | N/A | no | 0.995 | 0.997 | 0.878 | 0.0 | |
| P25696 | 444 | Bifunctional enolase 2/tr | yes | no | 0.993 | 0.995 | 0.880 | 0.0 | |
| Q43321 | 440 | Enolase OS=Alnus glutinos | N/A | no | 0.979 | 0.990 | 0.889 | 0.0 |
| >sp|P42896|ENO_RICCO Enolase OS=Ricinus communis PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/445 (93%), Positives = 431/445 (96%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
MAITI +V+ARQIFDSRGNPTVE D+ SDGH+ARAAVPSGASTGIYEALELRDGGSDYL
Sbjct: 1 MAITIVSVRARQIFDSRGNPTVEADIKLSDGHLARAAVPSGASTGIYEALELRDGGSDYL 60
Query: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GKGVSKAV NVN+IIGPAL GKDPTEQTA+DN+MVQ+LDGTVNEWGWCKQKLGANAILAV
Sbjct: 61 GKGVSKAVENVNSIIGPALIGKDPTEQTALDNFMVQELDGTVNEWGWCKQKLGANAILAV 120
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
SLA+CKAGAHVK IPLYKHIA L+GNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG
Sbjct: 121 SLALCKAGAHVKGIPLYKHIANLAGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
AS FKEAMKMG EVYHHLK+VIKKKYGQDATNVGDEGGFAPNIQENKEGLELL TAIAKA
Sbjct: 181 ASSFKEAMKMGAEVYHHLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIAKA 240
Query: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISG+ALKDLYKSF S+YPIVSI
Sbjct: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGEALKDLYKSFASEYPIVSI 300
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
EDPFDQDDWEHY+KLTSE+GEKVQIVGDDLLVTNPKRVEKAI+EK CNALLLKVNQIGSV
Sbjct: 301 EDPFDQDDWEHYSKLTSEIGEKVQIVGDDLLVTNPKRVEKAIQEKACNALLLKVNQIGSV 360
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
TESIEAVRMSK+AGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL
Sbjct: 361 TESIEAVRMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
Query: 421 LRIEEELGAEAVYAGAKFRAPVEPY 445
LRIEEELGAEAVYAGAKFR PVEPY
Sbjct: 421 LRIEEELGAEAVYAGAKFRTPVEPY 445
|
Ricinus communis (taxid: 3988) EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 1 |
| >sp|Q9LEI9|ENO2_HEVBR Enolase 2 OS=Hevea brasiliensis GN=ENO2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/445 (91%), Positives = 425/445 (95%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
MAITI +V+ARQIFDSRGNPTVE DV SDG++ARAAVP GASTGIYEALELRDGGSDYL
Sbjct: 1 MAITIVSVRARQIFDSRGNPTVEADVKLSDGYLARAAVPRGASTGIYEALELRDGGSDYL 60
Query: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GKGVSKAV NVN IIGPAL GKDPT+Q IDN+MVQQLDGTVNEWGWCKQKLGANAILAV
Sbjct: 61 GKGVSKAVENVNIIIGPALVGKDPTDQVGIDNFMVQQLDGTVNEWGWCKQKLGANAILAV 120
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
SLAVCKAGAHVK IPLYKH+A L+GNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG
Sbjct: 121 SLAVCKAGAHVKGIPLYKHVANLAGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
AS FKEAMKMG EVYHHLK+VIKKKYGQDATNVGDEGGFAPNIQENKEGLELL TAIAKA
Sbjct: 181 ASSFKEAMKMGAEVYHHLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIAKA 240
Query: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENN+GSQKISGD LKDLYKSF+++YPIVSI
Sbjct: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNNGSQKISGDVLKDLYKSFVTEYPIVSI 300
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
EDPFDQDDWEHYAKLTSE+G KVQIVGDDLLVTNPKRVEKAIKEK CNALLLKVNQIGSV
Sbjct: 301 EDPFDQDDWEHYAKLTSEIGVKVQIVGDDLLVTNPKRVEKAIKEKACNALLLKVNQIGSV 360
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
TESIEAV+MSK+AGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL
Sbjct: 361 TESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
Query: 421 LRIEEELGAEAVYAGAKFRAPVEPY 445
LRIEEELGAEAVYAGA FR PVEPY
Sbjct: 421 LRIEEELGAEAVYAGANFRTPVEPY 445
|
Hevea brasiliensis (taxid: 3981) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q9LEJ0|ENO1_HEVBR Enolase 1 OS=Hevea brasiliensis GN=ENO1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/445 (91%), Positives = 427/445 (95%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
MAITI +V+ARQIFDSRGNPTVE DV SDG++ARAAVPSGASTGIYEALELRDGGSDYL
Sbjct: 1 MAITIVSVRARQIFDSRGNPTVEADVKLSDGYLARAAVPSGASTGIYEALELRDGGSDYL 60
Query: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GKGVSKAV NVN IIGPAL GKDPT+Q IDN+MVQQLDGTVNEWGWCKQKLGANAILAV
Sbjct: 61 GKGVSKAVENVNIIIGPALVGKDPTDQVGIDNFMVQQLDGTVNEWGWCKQKLGANAILAV 120
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
SLAVCKAGAHVK IPLY+HIA L+GNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG
Sbjct: 121 SLAVCKAGAHVKGIPLYEHIANLAGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
AS FKEAMKMG EVYHHLK+VIKKKYGQDATNVGDEGGFAPNIQENKEGLELL TAIAKA
Sbjct: 181 ASSFKEAMKMGAEVYHHLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIAKA 240
Query: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
GYTGKVVIGMDVAASEFYGSD+TYDLNFKEENN+GSQKISG+ALKDLYKSF+++YPIVSI
Sbjct: 241 GYTGKVVIGMDVAASEFYGSDQTYDLNFKEENNNGSQKISGEALKDLYKSFVAEYPIVSI 300
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
EDPFDQDDW HYAKLTSE+GEKVQIVGDDLLVTNPKRVEKAIKEK CNALLLKVNQIGSV
Sbjct: 301 EDPFDQDDWAHYAKLTSEIGEKVQIVGDDLLVTNPKRVEKAIKEKACNALLLKVNQIGSV 360
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
TESIEAV+MSK+AGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL
Sbjct: 361 TESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
Query: 421 LRIEEELGAEAVYAGAKFRAPVEPY 445
LRIEEELG+EAVYAGA FR PVEPY
Sbjct: 421 LRIEEELGSEAVYAGANFRKPVEPY 445
|
Hevea brasiliensis (taxid: 3981) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q42971|ENO_ORYSJ Enolase OS=Oryza sativa subsp. japonica GN=ENO1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/446 (87%), Positives = 419/446 (93%), Gaps = 1/446 (0%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
MA TI +VKARQIFDSRGNPTVEVDV SDG ARAAVPSGASTG+YEALELRDGGSDYL
Sbjct: 1 MAATIVSVKARQIFDSRGNPTVEVDVCCSDGTFARAAVPSGASTGVYEALELRDGGSDYL 60
Query: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GKGVSKAV NVN++I PAL GKDPT Q +DN+MVQQLDGT NEWGWCKQKLGANAILAV
Sbjct: 61 GKGVSKAVDNVNSVIAPALIGKDPTSQAELDNFMVQQLDGTKNEWGWCKQKLGANAILAV 120
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
SLA+CKAGA +KKIPLY+HIA L+GNK LVLPVPAFNVINGGSHAGNKLAMQEFMILP G
Sbjct: 121 SLAICKAGAIIKKIPLYQHIANLAGNKQLVLPVPAFNVINGGSHAGNKLAMQEFMILPTG 180
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
A+ FKEAMKMGVEVYH+LK+VIKKKYGQDATNVGDEGGFAPNIQENKEGLELL TAI KA
Sbjct: 181 AASFKEAMKMGVEVYHNLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKA 240
Query: 241 GYTGKVVIGMDVAASEFYGS-DKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVS 299
GYTGKVVIGMDVAASEFY DKTYDLNFKEENNDGSQKISGD+LK++YKSF+S+YPIVS
Sbjct: 241 GYTGKVVIGMDVAASEFYNDKDKTYDLNFKEENNDGSQKISGDSLKNVYKSFVSEYPIVS 300
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
IEDPFDQDDWEHYAK+T+E+GE+VQIVGDDLLVTNP RV KAI+EK+CNALLLKVNQIGS
Sbjct: 301 IEDPFDQDDWEHYAKMTAEIGEQVQIVGDDLLVTNPTRVAKAIQEKSCNALLLKVNQIGS 360
Query: 360 VTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQ 419
VTESIEAV+MSK+AGWGVM SHRSGETEDTFIADL+VGLATGQIKTGAPCRSERLAKYNQ
Sbjct: 361 VTESIEAVKMSKRAGWGVMTSHRSGETEDTFIADLAVGLATGQIKTGAPCRSERLAKYNQ 420
Query: 420 LLRIEEELGAEAVYAGAKFRAPVEPY 445
LLRIEEELGA AVYAGAKFRAPVEPY
Sbjct: 421 LLRIEEELGAAAVYAGAKFRAPVEPY 446
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|P26300|ENO_SOLLC Enolase OS=Solanum lycopersicum GN=PGH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/442 (88%), Positives = 418/442 (94%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKG 63
TI ++KARQIFDSRGNPTVEVDV S+G ARAAVPSGASTGIYEALELRDGGSDYLGKG
Sbjct: 3 TIKSIKARQIFDSRGNPTVEVDVHISNGVFARAAVPSGASTGIYEALELRDGGSDYLGKG 62
Query: 64 VSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLA 123
VSKAV+NVN+IIGPAL GKDPT+QT +DN+MV QLDGT NEWGWCK+KLGANAILAVSLA
Sbjct: 63 VSKAVNNVNSIIGPALVGKDPTDQTGLDNFMVHQLDGTQNEWGWCKEKLGANAILAVSLA 122
Query: 124 VCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASC 183
VCKAGA V+ +PLYKHIA+L+GNK LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGA+
Sbjct: 123 VCKAGAAVRNVPLYKHIADLAGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAAN 182
Query: 184 FKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYT 243
FKEAMKMG EVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELL TAI KAGYT
Sbjct: 183 FKEAMKMGCEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGYT 242
Query: 244 GKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDP 303
GKVVIGMDVAASEFYG DK+YDLNFKEE+NDGSQKISGD LKDLYKSF+S+YPIVSIEDP
Sbjct: 243 GKVVIGMDVAASEFYGKDKSYDLNFKEESNDGSQKISGDQLKDLYKSFVSEYPIVSIEDP 302
Query: 304 FDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTES 363
FDQDDWE YAKLT+E+GE+VQIVGDDLLVTNPKRV KAI EKTCNALLLKVNQIGSVTES
Sbjct: 303 FDQDDWETYAKLTAEIGEQVQIVGDDLLVTNPKRVAKAIAEKTCNALLLKVNQIGSVTES 362
Query: 364 IEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRI 423
IEAV+MSK+AGWGVM SHRSGETEDTFIADL+VGL+TGQIKTGAPCRSERLAKYNQLLRI
Sbjct: 363 IEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRI 422
Query: 424 EEELGAEAVYAGAKFRAPVEPY 445
EEELG+EAVYAGA FR PVEPY
Sbjct: 423 EEELGSEAVYAGASFRKPVEPY 444
|
Solanum lycopersicum (taxid: 4081) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|P42895|ENO2_MAIZE Enolase 2 OS=Zea mays GN=ENO2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/446 (88%), Positives = 419/446 (93%), Gaps = 1/446 (0%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
MA TI +VKARQIFDSRGNPTVEVDV SDG ARAAVPSGASTG+YEALELRDGGS YL
Sbjct: 1 MAATIQSVKARQIFDSRGNPTVEVDVFCSDGTFARAAVPSGASTGVYEALELRDGGSYYL 60
Query: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GKGVSKAV+NVN++IGPAL GKDPT QT IDN+MVQQLDGT NEWGWCKQKLGANAILAV
Sbjct: 61 GKGVSKAVNNVNSVIGPALIGKDPTAQTEIDNFMVQQLDGTKNEWGWCKQKLGANAILAV 120
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
SLAVCKAGA +K+IPLY+HIA L+GNK LVLPVPAFNVINGGSHAGNKLAMQEFMILP G
Sbjct: 121 SLAVCKAGASIKRIPLYQHIANLAGNKQLVLPVPAFNVINGGSHAGNKLAMQEFMILPTG 180
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
A+ FKEAMKMGVEVYHHLK+VIKKKYGQDATNVGDEGGFAPNIQENKEGLELL TAI KA
Sbjct: 181 AASFKEAMKMGVEVYHHLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKA 240
Query: 241 GYTGKVVIGMDVAASEFYG-SDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVS 299
GYTGKVVIGMDVAASEFY D+TYDLNFKEENNDGSQKISGD+LK++YKSF+S+YPIVS
Sbjct: 241 GYTGKVVIGMDVAASEFYSDKDQTYDLNFKEENNDGSQKISGDSLKNVYKSFVSEYPIVS 300
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
IEDPFDQDDW HYAK+T E+GE+VQIVGDDLLVTNP RV KAIKEK+CNALLLKVNQIGS
Sbjct: 301 IEDPFDQDDWVHYAKMTEEIGEQVQIVGDDLLVTNPTRVAKAIKEKSCNALLLKVNQIGS 360
Query: 360 VTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQ 419
VTESIEAV+MSK+AGWGVM SHRSGETEDTFIADL+VGL+TGQIKTGAPCRSERLAKYNQ
Sbjct: 361 VTESIEAVKMSKRAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQ 420
Query: 420 LLRIEEELGAEAVYAGAKFRAPVEPY 445
LLRIEEELGA AVYAGAKFRAPVEPY
Sbjct: 421 LLRIEEELGAIAVYAGAKFRAPVEPY 446
|
Zea mays (taxid: 4577) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|P26301|ENO1_MAIZE Enolase 1 OS=Zea mays GN=ENO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/446 (89%), Positives = 414/446 (92%), Gaps = 1/446 (0%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
MA+TIT VKARQIFDSRGNPTVEVDV SDG AR AVPSGASTGIYEALELRDGGSDYL
Sbjct: 1 MAVTITWVKARQIFDSRGNPTVEVDVGLSDGSYARGAVPSGASTGIYEALELRDGGSDYL 60
Query: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GKGV KAVSNVN IIGPA+ GKDPTEQ IDN+MVQQLDGT NEWGWCKQKLGANAILAV
Sbjct: 61 GKGVLKAVSNVNNIIGPAIVGKDPTEQVEIDNFMVQQLDGTSNEWGWCKQKLGANAILAV 120
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
SLAVCKAGA VKKIPLY+HIA L+GNK LVLPVPAFNVINGGSHAGNKLAMQEFMILP G
Sbjct: 121 SLAVCKAGAMVKKIPLYQHIANLAGNKTLVLPVPAFNVINGGSHAGNKLAMQEFMILPTG 180
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
AS FKEAMKMGVEVYH+LK++IKKKYGQDATNVGDEGGFAPNIQENKEGLELL AI KA
Sbjct: 181 ASSFKEAMKMGVEVYHNLKSIIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKAAIEKA 240
Query: 241 GYTGKVVIGMDVAASEFYGS-DKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVS 299
GYTGKVVIGMDVAASEF+G DKTYDLNFKEENNDGS KISGD+LKDLYKSF+S+YPI S
Sbjct: 241 GYTGKVVIGMDVAASEFFGEKDKTYDLNFKEENNDGSNKISGDSLKDLYKSFVSEYPIES 300
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
IEDPFDQDDW YAKLT E+G+KVQIVGDDLLVTNP RV KAI EKTCNALLLKVNQIGS
Sbjct: 301 IEDPFDQDDWSTYAKLTDEIGQKVQIVGDDLLVTNPTRVAKAINEKTCNALLLKVNQIGS 360
Query: 360 VTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQ 419
VTESIEAVRMSK+AGWGVMASHRSGETEDTFIADLSVGL+TGQIKTGAPCRSERLAKYNQ
Sbjct: 361 VTESIEAVRMSKRAGWGVMASHRSGETEDTFIADLSVGLSTGQIKTGAPCRSERLAKYNQ 420
Query: 420 LLRIEEELGAEAVYAGAKFRAPVEPY 445
LLRIEEELG AVYAGAKFRAPVEPY
Sbjct: 421 LLRIEEELGDAAVYAGAKFRAPVEPY 446
|
Zea mays (taxid: 4577) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q43130|ENO_MESCR Enolase OS=Mesembryanthemum crystallinum GN=PGH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 814 bits (2103), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/443 (87%), Positives = 415/443 (93%)
Query: 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGK 62
+TI VKARQI+DSRGNPTVE D+ DG ARAAVPSGASTG+YEALELRDGG DY+GK
Sbjct: 2 VTIKCVKARQIYDSRGNPTVEADIHLDDGTYARAAVPSGASTGVYEALELRDGGKDYMGK 61
Query: 63 GVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSL 122
GV KAV NVN IIGPAL GKDPT+QTAIDN+MVQQLDGTVNEWGWCKQKLGANAILAVSL
Sbjct: 62 GVYKAVKNVNEIIGPALVGKDPTQQTAIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSL 121
Query: 123 AVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAS 182
AVCKAGA VKKIPLY+HIAE++GNKN+VLPVPAFNVINGGSHAGNKLAMQEFMILP GAS
Sbjct: 122 AVCKAGAQVKKIPLYQHIAEIAGNKNMVLPVPAFNVINGGSHAGNKLAMQEFMILPTGAS 181
Query: 183 CFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGY 242
FKEAMKMG EVYH+LK+VIKKKYGQDATNVGDEGGFAPNIQENKEGLELL TAI KAGY
Sbjct: 182 SFKEAMKMGSEVYHNLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGY 241
Query: 243 TGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIED 302
TGKVVIGMDVAASEFY DK+YDLNFKEENNDGSQ+ISG+ALKDLYKSF+++YPIVSIED
Sbjct: 242 TGKVVIGMDVAASEFYKEDKSYDLNFKEENNDGSQRISGEALKDLYKSFVAEYPIVSIED 301
Query: 303 PFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTE 362
PFDQDDWEHYAK+T+E GEKVQIVGDDLLVTNPKRV+KAI E CNALLLKVNQIGSVTE
Sbjct: 302 PFDQDDWEHYAKMTAECGEKVQIVGDDLLVTNPKRVKKAIDENPCNALLLKVNQIGSVTE 361
Query: 363 SIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLR 422
SIEAV+MSK+AGWGVMASHRSGETEDTFIADLSVGL+TGQIKTGAPCRSERLAKYNQLLR
Sbjct: 362 SIEAVKMSKKAGWGVMASHRSGETEDTFIADLSVGLSTGQIKTGAPCRSERLAKYNQLLR 421
Query: 423 IEEELGAEAVYAGAKFRAPVEPY 445
IEEELG +AVYAGA FR PVEPY
Sbjct: 422 IEEELGDKAVYAGANFRRPVEPY 444
|
Mesembryanthemum crystallinum (taxid: 3544) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|P25696|ENO2_ARATH Bifunctional enolase 2/transcriptional activator OS=Arabidopsis thaliana GN=ENO2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/442 (88%), Positives = 412/442 (93%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKG 63
TIT VKARQIFDSRGNPTVEVD+ TS+G AAVPSGASTGIYEALELRDGGSDYLGKG
Sbjct: 3 TITVVKARQIFDSRGNPTVEVDIHTSNGIKVTAAVPSGASTGIYEALELRDGGSDYLGKG 62
Query: 64 VSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLA 123
VSKAV NVN IIGPAL GKDPT+QTAIDN+MV +LDGT NEWGWCKQKLGANAILAVSLA
Sbjct: 63 VSKAVGNVNNIIGPALIGKDPTQQTAIDNFMVHELDGTQNEWGWCKQKLGANAILAVSLA 122
Query: 124 VCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASC 183
VCKAGA V IPLYKHIA L+GN +VLPVPAFNVINGGSHAGNKLAMQEFMILPVGA+
Sbjct: 123 VCKAGAVVSGIPLYKHIANLAGNPKIVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAAS 182
Query: 184 FKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYT 243
FKEAMKMGVEVYHHLK+VIKKKYGQDATNVGDEGGFAPNIQENKEGLELL TAI KAGYT
Sbjct: 183 FKEAMKMGVEVYHHLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGYT 242
Query: 244 GKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDP 303
GKVVIGMDVAASEFY DKTYDLNFKEENN+GSQKISGDALKDLYKSF+++YPIVSIEDP
Sbjct: 243 GKVVIGMDVAASEFYSEDKTYDLNFKEENNNGSQKISGDALKDLYKSFVAEYPIVSIEDP 302
Query: 304 FDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTES 363
FDQDDWEHYAK+T+E G +VQIVGDDLLVTNPKRV KAI EK+CNALLLKVNQIGSVTES
Sbjct: 303 FDQDDWEHYAKMTTECGTEVQIVGDDLLVTNPKRVAKAIAEKSCNALLLKVNQIGSVTES 362
Query: 364 IEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRI 423
IEAV+MSK+AGWGVM SHRSGETEDTFIADL+VGL+TGQIKTGAPCRSERLAKYNQLLRI
Sbjct: 363 IEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRI 422
Query: 424 EEELGAEAVYAGAKFRAPVEPY 445
EEELG+EA+YAG FR PVEPY
Sbjct: 423 EEELGSEAIYAGVNFRKPVEPY 444
|
Multifunctional enzyme that acts as an enolase involved in the metabolism and as a positive regulator of cold-responsive gene transcription. Binds to the cis-element the gene promoter of STZ/ZAT10, a zinc finger transcriptional repressor. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q43321|ENO_ALNGL Enolase OS=Alnus glutinosa GN=PGH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/442 (88%), Positives = 410/442 (92%), Gaps = 6/442 (1%)
Query: 5 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGV 64
IT +KARQIFDSRGNPTVE +VTT++G V+RAAVPSGASTG+YEALELRDGGSDYLGKGV
Sbjct: 4 ITHIKARQIFDSRGNPTVEAEVTTANGVVSRAAVPSGASTGVYEALELRDGGSDYLGKGV 63
Query: 65 SKAVSNVNAIIGPALAGKDPTEQTAID-NYMVQQLDGTVNEWGWCKQKLGANAILAVSLA 123
KAV NVN IIGPAL GKD TEQTAID ++M QQLDGTVNEWGWCKQKLGANAILAVSLA
Sbjct: 64 LKAVDNVNKIIGPALIGKDATEQTAIDIDFMFQQLDGTVNEWGWCKQKLGANAILAVSLA 123
Query: 124 VCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASC 183
VCKAGA VKKIPLYKHIA L+GN LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAS
Sbjct: 124 VCKAGASVKKIPLYKHIANLAGNPKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASS 183
Query: 184 FKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYT 243
FKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELL TAIAKAGY
Sbjct: 184 FKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIAKAGY- 242
Query: 244 GKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDP 303
VVIGMDVAASEFY DK NFKEENNDGSQKIS D LKDLYKSF+ +YPIVSIEDP
Sbjct: 243 --VVIGMDVAASEFYEKDKDI-TNFKEENNDGSQKISADQLKDLYKSFVDEYPIVSIEDP 299
Query: 304 FDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTES 363
FDQDDWEHY+KLT+E+GEKVQIVGDDLLVTNPKRVEKAIKEK CNALLLKVNQIGSVTES
Sbjct: 300 FDQDDWEHYSKLTAEIGEKVQIVGDDLLVTNPKRVEKAIKEKACNALLLKVNQIGSVTES 359
Query: 364 IEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRI 423
IEAV+MSK+AGWGVMA HRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRI
Sbjct: 360 IEAVKMSKRAGWGVMA-HRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRI 418
Query: 424 EEELGAEAVYAGAKFRAPVEPY 445
EEELG+EAVYAGA FR PVEPY
Sbjct: 419 EEELGSEAVYAGANFRTPVEPY 440
|
Alnus glutinosa (taxid: 3517) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 445 | ||||||
| 289600010 | 445 | 2-phospho-D-glycerate hydrolase [Citrus | 1.0 | 1.0 | 0.997 | 0.0 | |
| 1169534 | 445 | RecName: Full=Enolase; AltName: Full=2-p | 1.0 | 1.0 | 0.930 | 0.0 | |
| 255575355 | 445 | enolase, putative [Ricinus communis] gi| | 1.0 | 1.0 | 0.928 | 0.0 | |
| 224068957 | 445 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.919 | 0.0 | |
| 14423687 | 445 | RecName: Full=Enolase 2; AltName: Full=2 | 1.0 | 1.0 | 0.919 | 0.0 | |
| 14423688 | 445 | RecName: Full=Enolase 1; AltName: Full=2 | 1.0 | 1.0 | 0.916 | 0.0 | |
| 158144895 | 445 | enolase [Gossypium hirsutum] | 1.0 | 1.0 | 0.921 | 0.0 | |
| 33415263 | 445 | enolase [Gossypium barbadense] | 1.0 | 1.0 | 0.921 | 0.0 | |
| 449451102 | 444 | PREDICTED: enolase-like [Cucumis sativus | 0.993 | 0.995 | 0.916 | 0.0 | |
| 376372996 | 444 | enolase [Phytolacca americana] | 0.995 | 0.997 | 0.905 | 0.0 |
| >gi|289600010|gb|ADD12953.1| 2-phospho-D-glycerate hydrolase [Citrus trifoliata] | Back alignment and taxonomy information |
|---|
Score = 911 bits (2355), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/445 (99%), Positives = 444/445 (99%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL
Sbjct: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
Query: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV
Sbjct: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG
Sbjct: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
AS FKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA
Sbjct: 181 ASSFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
Query: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI
Sbjct: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV
Sbjct: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL
Sbjct: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
Query: 421 LRIEEELGAEAVYAGAKFRAPVEPY 445
LRIEEELGAEAVYAGAKFRAPVEPY
Sbjct: 421 LRIEEELGAEAVYAGAKFRAPVEPY 445
|
Source: Citrus trifoliata Species: Citrus trifoliata Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1169534|sp|P42896.1|ENO_RICCO RecName: Full=Enolase; AltName: Full=2-phospho-D-glycerate hydro-lyase; AltName: Full=2-phosphoglycerate dehydratase gi|433609|emb|CAA82232.1| enolase [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/445 (93%), Positives = 431/445 (96%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
MAITI +V+ARQIFDSRGNPTVE D+ SDGH+ARAAVPSGASTGIYEALELRDGGSDYL
Sbjct: 1 MAITIVSVRARQIFDSRGNPTVEADIKLSDGHLARAAVPSGASTGIYEALELRDGGSDYL 60
Query: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GKGVSKAV NVN+IIGPAL GKDPTEQTA+DN+MVQ+LDGTVNEWGWCKQKLGANAILAV
Sbjct: 61 GKGVSKAVENVNSIIGPALIGKDPTEQTALDNFMVQELDGTVNEWGWCKQKLGANAILAV 120
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
SLA+CKAGAHVK IPLYKHIA L+GNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG
Sbjct: 121 SLALCKAGAHVKGIPLYKHIANLAGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
AS FKEAMKMG EVYHHLK+VIKKKYGQDATNVGDEGGFAPNIQENKEGLELL TAIAKA
Sbjct: 181 ASSFKEAMKMGAEVYHHLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIAKA 240
Query: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISG+ALKDLYKSF S+YPIVSI
Sbjct: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGEALKDLYKSFASEYPIVSI 300
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
EDPFDQDDWEHY+KLTSE+GEKVQIVGDDLLVTNPKRVEKAI+EK CNALLLKVNQIGSV
Sbjct: 301 EDPFDQDDWEHYSKLTSEIGEKVQIVGDDLLVTNPKRVEKAIQEKACNALLLKVNQIGSV 360
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
TESIEAVRMSK+AGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL
Sbjct: 361 TESIEAVRMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
Query: 421 LRIEEELGAEAVYAGAKFRAPVEPY 445
LRIEEELGAEAVYAGAKFR PVEPY
Sbjct: 421 LRIEEELGAEAVYAGAKFRTPVEPY 445
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575355|ref|XP_002528580.1| enolase, putative [Ricinus communis] gi|223531976|gb|EEF33788.1| enolase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/445 (92%), Positives = 430/445 (96%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
MAITI +V+ARQIFDSRGNPTVE D+ SDGH+ARAAVPSGASTGIYEALELRDGGSDYL
Sbjct: 1 MAITIVSVRARQIFDSRGNPTVEADIKLSDGHLARAAVPSGASTGIYEALELRDGGSDYL 60
Query: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GKGVSKAV NVN+IIGPAL GKDPTEQTA+DN+MVQ+LDGTVNEWGWCKQKLGANAILAV
Sbjct: 61 GKGVSKAVENVNSIIGPALIGKDPTEQTALDNFMVQELDGTVNEWGWCKQKLGANAILAV 120
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
SLA+CKAGAHVK IPLYKHIA +GNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG
Sbjct: 121 SLALCKAGAHVKGIPLYKHIANHAGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
AS FKEAMKMG EVYHHLK+VIKKKYGQDATNVGDEGGFAPNIQENKEGLELL TAIAKA
Sbjct: 181 ASSFKEAMKMGAEVYHHLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIAKA 240
Query: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISG+ALKDLYKSF S+YPIVSI
Sbjct: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGEALKDLYKSFASEYPIVSI 300
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
EDPFDQDDWEHY+KLTSE+GEKVQIVGDDLLVTNPKRVEKAI+EK CNALLLKVNQIGSV
Sbjct: 301 EDPFDQDDWEHYSKLTSEIGEKVQIVGDDLLVTNPKRVEKAIQEKACNALLLKVNQIGSV 360
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
TESIEAVRMSK+AGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL
Sbjct: 361 TESIEAVRMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
Query: 421 LRIEEELGAEAVYAGAKFRAPVEPY 445
LRIEEELGAEAVYAGAKFR PVEPY
Sbjct: 421 LRIEEELGAEAVYAGAKFRTPVEPY 445
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068957|ref|XP_002326240.1| predicted protein [Populus trichocarpa] gi|118488769|gb|ABK96195.1| unknown [Populus trichocarpa] gi|222833433|gb|EEE71910.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 852 bits (2201), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/445 (91%), Positives = 426/445 (95%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
M ITI +VKARQIFDSRGNPTVE DVTTSDG ++RAAVPSGASTG+YEALELRDGGSDYL
Sbjct: 1 MTITIVSVKARQIFDSRGNPTVEADVTTSDGVLSRAAVPSGASTGVYEALELRDGGSDYL 60
Query: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GKGVSKAV NVN IIGPAL GKDPTEQ AIDN MVQQLDGTVNEWGWCKQKLGANAILAV
Sbjct: 61 GKGVSKAVGNVNTIIGPALIGKDPTEQVAIDNLMVQQLDGTVNEWGWCKQKLGANAILAV 120
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
SLAVCKAGAH K IPLYKHIA L+GNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILP G
Sbjct: 121 SLAVCKAGAHAKGIPLYKHIANLAGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPTG 180
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
AS FKEAMKMG EVYHHLK+VIKKKYGQDATNVGDEGGFAPNIQ+N+EGLELL TAIAKA
Sbjct: 181 ASSFKEAMKMGAEVYHHLKSVIKKKYGQDATNVGDEGGFAPNIQDNQEGLELLKTAIAKA 240
Query: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
GYTGKVVIGMDVAASEFYG+DKTYDLNFKEENNDGS+KI+GDALKDLYKSF+S+YPIVSI
Sbjct: 241 GYTGKVVIGMDVAASEFYGADKTYDLNFKEENNDGSKKITGDALKDLYKSFVSEYPIVSI 300
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
EDPFDQDDWEHYAKLT+E+GEKVQIVGDDLLVTNPKRVEKAIKEK CNALLLKVNQIGSV
Sbjct: 301 EDPFDQDDWEHYAKLTAEIGEKVQIVGDDLLVTNPKRVEKAIKEKACNALLLKVNQIGSV 360
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
TESIEAV+MSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQ+
Sbjct: 361 TESIEAVKMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQI 420
Query: 421 LRIEEELGAEAVYAGAKFRAPVEPY 445
LRIEEELGAEAVYAGA FR PVEPY
Sbjct: 421 LRIEEELGAEAVYAGANFRRPVEPY 445
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|14423687|sp|Q9LEI9.1|ENO2_HEVBR RecName: Full=Enolase 2; AltName: Full=2-phospho-D-glycerate hydro-lyase 2; AltName: Full=2-phosphoglycerate dehydratase 2; AltName: Allergen=Hev b 9 gi|9581746|emb|CAC00533.1| enolase, isoform 2 [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/445 (91%), Positives = 425/445 (95%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
MAITI +V+ARQIFDSRGNPTVE DV SDG++ARAAVP GASTGIYEALELRDGGSDYL
Sbjct: 1 MAITIVSVRARQIFDSRGNPTVEADVKLSDGYLARAAVPRGASTGIYEALELRDGGSDYL 60
Query: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GKGVSKAV NVN IIGPAL GKDPT+Q IDN+MVQQLDGTVNEWGWCKQKLGANAILAV
Sbjct: 61 GKGVSKAVENVNIIIGPALVGKDPTDQVGIDNFMVQQLDGTVNEWGWCKQKLGANAILAV 120
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
SLAVCKAGAHVK IPLYKH+A L+GNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG
Sbjct: 121 SLAVCKAGAHVKGIPLYKHVANLAGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
AS FKEAMKMG EVYHHLK+VIKKKYGQDATNVGDEGGFAPNIQENKEGLELL TAIAKA
Sbjct: 181 ASSFKEAMKMGAEVYHHLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIAKA 240
Query: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENN+GSQKISGD LKDLYKSF+++YPIVSI
Sbjct: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNNGSQKISGDVLKDLYKSFVTEYPIVSI 300
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
EDPFDQDDWEHYAKLTSE+G KVQIVGDDLLVTNPKRVEKAIKEK CNALLLKVNQIGSV
Sbjct: 301 EDPFDQDDWEHYAKLTSEIGVKVQIVGDDLLVTNPKRVEKAIKEKACNALLLKVNQIGSV 360
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
TESIEAV+MSK+AGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL
Sbjct: 361 TESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
Query: 421 LRIEEELGAEAVYAGAKFRAPVEPY 445
LRIEEELGAEAVYAGA FR PVEPY
Sbjct: 421 LRIEEELGAEAVYAGANFRTPVEPY 445
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|14423688|sp|Q9LEJ0.1|ENO1_HEVBR RecName: Full=Enolase 1; AltName: Full=2-phospho-D-glycerate hydro-lyase 1; AltName: Full=2-phosphoglycerate dehydratase 1; AltName: Allergen=Hev b 9 gi|9581744|emb|CAC00532.1| enolase, isoform 1 [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/445 (91%), Positives = 427/445 (95%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
MAITI +V+ARQIFDSRGNPTVE DV SDG++ARAAVPSGASTGIYEALELRDGGSDYL
Sbjct: 1 MAITIVSVRARQIFDSRGNPTVEADVKLSDGYLARAAVPSGASTGIYEALELRDGGSDYL 60
Query: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GKGVSKAV NVN IIGPAL GKDPT+Q IDN+MVQQLDGTVNEWGWCKQKLGANAILAV
Sbjct: 61 GKGVSKAVENVNIIIGPALVGKDPTDQVGIDNFMVQQLDGTVNEWGWCKQKLGANAILAV 120
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
SLAVCKAGAHVK IPLY+HIA L+GNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG
Sbjct: 121 SLAVCKAGAHVKGIPLYEHIANLAGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
AS FKEAMKMG EVYHHLK+VIKKKYGQDATNVGDEGGFAPNIQENKEGLELL TAIAKA
Sbjct: 181 ASSFKEAMKMGAEVYHHLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIAKA 240
Query: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
GYTGKVVIGMDVAASEFYGSD+TYDLNFKEENN+GSQKISG+ALKDLYKSF+++YPIVSI
Sbjct: 241 GYTGKVVIGMDVAASEFYGSDQTYDLNFKEENNNGSQKISGEALKDLYKSFVAEYPIVSI 300
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
EDPFDQDDW HYAKLTSE+GEKVQIVGDDLLVTNPKRVEKAIKEK CNALLLKVNQIGSV
Sbjct: 301 EDPFDQDDWAHYAKLTSEIGEKVQIVGDDLLVTNPKRVEKAIKEKACNALLLKVNQIGSV 360
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
TESIEAV+MSK+AGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL
Sbjct: 361 TESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
Query: 421 LRIEEELGAEAVYAGAKFRAPVEPY 445
LRIEEELG+EAVYAGA FR PVEPY
Sbjct: 421 LRIEEELGSEAVYAGANFRKPVEPY 445
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|158144895|gb|ABW21688.1| enolase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/445 (92%), Positives = 425/445 (95%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
MA TI +VKARQIFDSRGNPTVEVDV TS+G ARAAVPSGASTGIYEALELRDG DYL
Sbjct: 1 MAATIVSVKARQIFDSRGNPTVEVDVETSNGIKARAAVPSGASTGIYEALELRDGDFDYL 60
Query: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GKGVSKAV+NVN IIGPAL GKDPTEQTAIDN+MVQQLDGT NEWGWCKQKLGANAILAV
Sbjct: 61 GKGVSKAVANVNTIIGPALIGKDPTEQTAIDNFMVQQLDGTQNEWGWCKQKLGANAILAV 120
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
SLAVCKAGA VKK+PLYKHIA L+GN LVLPVPAFNVINGGSHAGNKLAMQEFMILPVG
Sbjct: 121 SLAVCKAGAEVKKLPLYKHIANLAGNSKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
AS FKEAMKMGVEVYHHLK+VIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA
Sbjct: 181 ASSFKEAMKMGVEVYHHLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
Query: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
GYTGKVVIGMDVAASEFYG+DKTYDLNFKEENNDG QKISGDALKDLYKSF+++YPIVSI
Sbjct: 241 GYTGKVVIGMDVAASEFYGTDKTYDLNFKEENNDGKQKISGDALKDLYKSFVAEYPIVSI 300
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
EDPFDQDDWEHY+KLT+E+GEKVQIVGDDLLVTNPKRV KAI EKTCNALLLKVNQIGSV
Sbjct: 301 EDPFDQDDWEHYSKLTNEIGEKVQIVGDDLLVTNPKRVAKAIAEKTCNALLLKVNQIGSV 360
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
TESIEAV+MSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL
Sbjct: 361 TESIEAVKMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
Query: 421 LRIEEELGAEAVYAGAKFRAPVEPY 445
LRIEEELGAEAVYAGA FRAPV PY
Sbjct: 421 LRIEEELGAEAVYAGASFRAPVAPY 445
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|33415263|gb|AAQ18140.1| enolase [Gossypium barbadense] | Back alignment and taxonomy information |
|---|
Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/445 (92%), Positives = 425/445 (95%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
MA TI +VKARQIFDSRGNPTVEVDV TS+G ARAAVPSGASTGIYEALELRDGGSDYL
Sbjct: 1 MAATIVSVKARQIFDSRGNPTVEVDVETSNGIKARAAVPSGASTGIYEALELRDGGSDYL 60
Query: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GKGVSKAV+NVN IIGPAL GKDPTEQTAIDN+MVQQLDGT NEWGWCKQKLGANAILAV
Sbjct: 61 GKGVSKAVANVNTIIGPALIGKDPTEQTAIDNFMVQQLDGTQNEWGWCKQKLGANAILAV 120
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
SLAVCKAGA VKK+PLYKHIA L+GN LVLPVPAFNVINGGSHAGNKLAMQEFMILPVG
Sbjct: 121 SLAVCKAGAEVKKLPLYKHIANLAGNSKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
AS FKEAMKMGVEVYHHLK+VIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA
Sbjct: 181 ASSFKEAMKMGVEVYHHLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
Query: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
GYTGKVVIGMDVAASEFYG+DKTYDLNFKEENNDG QKISGDALKDLYKSF+++YPIVSI
Sbjct: 241 GYTGKVVIGMDVAASEFYGTDKTYDLNFKEENNDGKQKISGDALKDLYKSFVAEYPIVSI 300
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
EDPFDQDDWEHY+KLT E+GEKVQIVGDDLLVTNPKRV KAI EKTCNALLLKVNQIGSV
Sbjct: 301 EDPFDQDDWEHYSKLTKEIGEKVQIVGDDLLVTNPKRVAKAIAEKTCNALLLKVNQIGSV 360
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
TESIEAV+MSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAP RSERLAKYNQL
Sbjct: 361 TESIEAVKMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPRRSERLAKYNQL 420
Query: 421 LRIEEELGAEAVYAGAKFRAPVEPY 445
LRIEEELGA+AVYAGA FRAPV PY
Sbjct: 421 LRIEEELGAKAVYAGASFRAPVAPY 445
|
Source: Gossypium barbadense Species: Gossypium barbadense Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451102|ref|XP_004143301.1| PREDICTED: enolase-like [Cucumis sativus] gi|449511860|ref|XP_004164073.1| PREDICTED: enolase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 843 bits (2179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/442 (91%), Positives = 421/442 (95%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKG 63
TI +VKARQIFDSRGNPTVEVD+ SDG +ARAAVPSGASTGIYEALELRDGGSDYLGKG
Sbjct: 3 TIQSVKARQIFDSRGNPTVEVDIVLSDGSLARAAVPSGASTGIYEALELRDGGSDYLGKG 62
Query: 64 VSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLA 123
VSKAV NVNAIIGPAL GKDPTEQ IDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLA
Sbjct: 63 VSKAVENVNAIIGPALVGKDPTEQAQIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLA 122
Query: 124 VCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASC 183
+CKAGA VKKIPLY+HIA L+GN LVLPVPAFNVINGGSHAGNKLAMQEFMILP+GAS
Sbjct: 123 LCKAGASVKKIPLYQHIANLAGNSQLVLPVPAFNVINGGSHAGNKLAMQEFMILPIGASS 182
Query: 184 FKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYT 243
FKEAMKMGVEVYHHLK+VIKKKYGQDATNVGDEGGFAPNIQENKEGLELL TAIAKAGYT
Sbjct: 183 FKEAMKMGVEVYHHLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIAKAGYT 242
Query: 244 GKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDP 303
+VVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSF S+YPIVSIEDP
Sbjct: 243 SQVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFASEYPIVSIEDP 302
Query: 304 FDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTES 363
FDQDDWEHYAK+TSE+G+KVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTES
Sbjct: 303 FDQDDWEHYAKMTSEIGDKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTES 362
Query: 364 IEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRI 423
IEAV+MSK+AGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRI
Sbjct: 363 IEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRI 422
Query: 424 EEELGAEAVYAGAKFRAPVEPY 445
EEELG+ AVYAG FR PV PY
Sbjct: 423 EEELGSAAVYAGVNFRKPVAPY 444
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|376372996|gb|AFB35652.1| enolase [Phytolacca americana] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/443 (90%), Positives = 422/443 (95%)
Query: 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGK 62
+TI VKARQI+DSRGNPTVE DV DG ARAAVPSGASTGIYEALELRDGGSDY+GK
Sbjct: 2 VTIKCVKARQIYDSRGNPTVEADVHLDDGTFARAAVPSGASTGIYEALELRDGGSDYMGK 61
Query: 63 GVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSL 122
GV KAV+NVN IIGPAL GKDPT+QTAIDN+MVQQLDGTVNEWGWCKQKLGANAILAVSL
Sbjct: 62 GVQKAVNNVNEIIGPALVGKDPTQQTAIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSL 121
Query: 123 AVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAS 182
AVCKAGA VKK PLYKHIAEL+GNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILP+GAS
Sbjct: 122 AVCKAGAQVKKTPLYKHIAELAGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPIGAS 181
Query: 183 CFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGY 242
FK+AMKMG EVYHHLK+VIKKKYGQDATNVGDEGGFAPNIQENKEGLELL TAI KAGY
Sbjct: 182 SFKDAMKMGSEVYHHLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGY 241
Query: 243 TGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIED 302
TGKVVIGMDVAASEFY DKTYDLNFKEENNDGSQKISG+ALKDLYKSF+++YPIVSIED
Sbjct: 242 TGKVVIGMDVAASEFYNDDKTYDLNFKEENNDGSQKISGNALKDLYKSFVTEYPIVSIED 301
Query: 303 PFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTE 362
PFDQDDWEHYAK+T+E+G+KVQIVGDDLLVTNPKRV+KAI EKTCNALLLKVNQIGSVTE
Sbjct: 302 PFDQDDWEHYAKMTAEIGDKVQIVGDDLLVTNPKRVQKAIDEKTCNALLLKVNQIGSVTE 361
Query: 363 SIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLR 422
SIEAV+MSKQAGWGVMASHRSGETEDTFIADLSVGL+TGQIKTGAPCRSERLAKYNQLLR
Sbjct: 362 SIEAVKMSKQAGWGVMASHRSGETEDTFIADLSVGLSTGQIKTGAPCRSERLAKYNQLLR 421
Query: 423 IEEELGAEAVYAGAKFRAPVEPY 445
IEEELGAEAVYAGAKFR PVEPY
Sbjct: 422 IEEELGAEAVYAGAKFRQPVEPY 444
|
Source: Phytolacca americana Species: Phytolacca americana Genus: Phytolacca Family: Phytolaccaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 445 | ||||||
| TAIR|locus:2044851 | 444 | LOS2 "LOW EXPRESSION OF OSMOTI | 0.993 | 0.995 | 0.880 | 5.1e-209 | |
| UNIPROTKB|P06733 | 434 | ENO1 "Alpha-enolase" [Homo sap | 0.964 | 0.988 | 0.708 | 4.1e-159 | |
| GENEDB_PFALCIPARUM|PF10_0155 | 446 | PF10_0155 "enolase" [Plasmodiu | 0.984 | 0.982 | 0.693 | 6.1e-158 | |
| UNIPROTKB|Q8IJN7 | 446 | ENO "Enolase" [Plasmodium falc | 0.984 | 0.982 | 0.693 | 6.1e-158 | |
| RGD|2553 | 434 | Eno1 "enolase 1, (alpha)" [Rat | 0.964 | 0.988 | 0.695 | 8.9e-157 | |
| WB|WBGene00011884 | 434 | enol-1 [Caenorhabditis elegans | 0.959 | 0.983 | 0.713 | 8.9e-157 | |
| UNIPROTKB|F1MB08 | 434 | ENO1 "Alpha-enolase" [Bos taur | 0.964 | 0.988 | 0.697 | 1.1e-156 | |
| UNIPROTKB|F1NZ78 | 434 | ENO1 "Alpha-enolase" [Gallus g | 0.961 | 0.986 | 0.701 | 2.4e-156 | |
| UNIPROTKB|P51913 | 434 | ENO1 "Alpha-enolase" [Gallus g | 0.961 | 0.986 | 0.701 | 2.4e-156 | |
| ZFIN|ZDB-GENE-040426-1651 | 433 | eno1b "enolase 1b, (alpha)" [D | 0.964 | 0.990 | 0.699 | 4.9e-156 |
| TAIR|locus:2044851 LOS2 "LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2021 (716.5 bits), Expect = 5.1e-209, P = 5.1e-209
Identities = 389/442 (88%), Positives = 412/442 (93%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKG 63
TIT VKARQIFDSRGNPTVEVD+ TS+G AAVPSGASTGIYEALELRDGGSDYLGKG
Sbjct: 3 TITVVKARQIFDSRGNPTVEVDIHTSNGIKVTAAVPSGASTGIYEALELRDGGSDYLGKG 62
Query: 64 VSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLA 123
VSKAV NVN IIGPAL GKDPT+QTAIDN+MV +LDGT NEWGWCKQKLGANAILAVSLA
Sbjct: 63 VSKAVGNVNNIIGPALIGKDPTQQTAIDNFMVHELDGTQNEWGWCKQKLGANAILAVSLA 122
Query: 124 VCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASC 183
VCKAGA V IPLYKHIA L+GN +VLPVPAFNVINGGSHAGNKLAMQEFMILPVGA+
Sbjct: 123 VCKAGAVVSGIPLYKHIANLAGNPKIVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAAS 182
Query: 184 FKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYT 243
FKEAMKMGVEVYHHLK+VIKKKYGQDATNVGDEGGFAPNIQENKEGLELL TAI KAGYT
Sbjct: 183 FKEAMKMGVEVYHHLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGYT 242
Query: 244 GKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDP 303
GKVVIGMDVAASEFY DKTYDLNFKEENN+GSQKISGDALKDLYKSF+++YPIVSIEDP
Sbjct: 243 GKVVIGMDVAASEFYSEDKTYDLNFKEENNNGSQKISGDALKDLYKSFVAEYPIVSIEDP 302
Query: 304 FDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTES 363
FDQDDWEHYAK+T+E G +VQIVGDDLLVTNPKRV KAI EK+CNALLLKVNQIGSVTES
Sbjct: 303 FDQDDWEHYAKMTTECGTEVQIVGDDLLVTNPKRVAKAIAEKSCNALLLKVNQIGSVTES 362
Query: 364 IEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRI 423
IEAV+MSK+AGWGVM SHRSGETEDTFIADL+VGL+TGQIKTGAPCRSERLAKYNQLLRI
Sbjct: 363 IEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRI 422
Query: 424 EEELGAEAVYAGAKFRAPVEPY 445
EEELG+EA+YAG FR PVEPY
Sbjct: 423 EEELGSEAIYAGVNFRKPVEPY 444
|
|
| UNIPROTKB|P06733 ENO1 "Alpha-enolase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1550 (550.7 bits), Expect = 4.1e-159, P = 4.1e-159
Identities = 314/443 (70%), Positives = 362/443 (81%)
Query: 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLG 61
++I + AR+IFDSRGNPTVEVD+ TS G + RAAVPSGASTGIYEALELRD Y+G
Sbjct: 1 MSILKIHAREIFDSRGNPTVEVDLFTSKG-LFRAAVPSGASTGIYEALELRDNDKTRYMG 59
Query: 62 KGVSKAVSNVNAIIGPALAGK--DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILA 119
KGVSKAV ++N I PAL K + TEQ ID M++ +DGT N K K GANAIL
Sbjct: 60 KGVSKAVEHINKTIAPALVSKKLNVTEQEKIDKLMIE-MDGTEN-----KSKFGANAILG 113
Query: 120 VSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPV 179
VSLAVCKAGA K +PLY+HIA+L+GN ++LPVPAFNVINGGSHAGNKLAMQEFMILPV
Sbjct: 114 VSLAVCKAGAVEKGVPLYRHIADLAGNSEVILPVPAFNVINGGSHAGNKLAMQEFMILPV 173
Query: 180 GASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAK 239
GA+ F+EAM++G EVYH+LK VIK+KYG+DATNVGDEGGFAPNI ENKEGLELL TAI K
Sbjct: 174 GAANFREAMRIGAEVYHNLKNVIKEKYGKDATNVGDEGGFAPNILENKEGLELLKTAIGK 233
Query: 240 AGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVS 299
AGYT KVVIGMDVAASEF+ S K YDL+FK + D S+ IS D L DLYKSFI DYP+VS
Sbjct: 234 AGYTDKVVIGMDVAASEFFRSGK-YDLDFKSPD-DPSRYISPDQLADLYKSFIKDYPVVS 291
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
IEDPFDQDDW + K T+ G +Q+VGDDL VTNPKR+ KA+ EK+CN LLLKVNQIGS
Sbjct: 292 IEDPFDQDDWGAWQKFTASAG--IQVVGDDLTVTNPKRIAKAVNEKSCNCLLLKVNQIGS 349
Query: 360 VTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQ 419
VTES++A ++++ GWGVM SHRSGETEDTFIADL VGL TGQIKTGAPCRSERLAKYNQ
Sbjct: 350 VTESLQACKLAQANGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQ 409
Query: 420 LLRIEEELGAEAVYAGAKFRAPV 442
LLRIEEELG++A +AG FR P+
Sbjct: 410 LLRIEEELGSKAKFAGRNFRNPL 432
|
|
| GENEDB_PFALCIPARUM|PF10_0155 PF10_0155 "enolase" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 1539 (546.8 bits), Expect = 6.1e-158, P = 6.1e-158
Identities = 307/443 (69%), Positives = 352/443 (79%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDY 59
MA IT + AR+I DSRGNPTVEVD+ T+ G + RAAVPSGASTGIYEALELRD S Y
Sbjct: 1 MAHVITRINAREILDSRGNPTVEVDLETNLG-IFRAAVPSGASTGIYEALELRDNDKSRY 59
Query: 60 LGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILA 119
LGKGV KA+ N+N II P L G + TEQ IDN MV++LDG+ NEWGW K KLGANAILA
Sbjct: 60 LGKGVQKAIKNINEIIAPKLIGMNCTEQKKIDNLMVEELDGSKNEWGWSKSKLGANAILA 119
Query: 120 VSLAVCKAGAHVKKIPLYKHIAELSGNKN--LVLPVPAFNVINGGSHAGNKLAMQEFMIL 177
+S+AVC+AGA K+ LYK++A+L+G K+ +VLPVP NVINGGSHAGNKL+ QEFMI+
Sbjct: 120 ISMAVCRAGAAANKVSLYKYLAQLAGKKSDQMVLPVPCLNVINGGSHAGNKLSFQEFMIV 179
Query: 178 PVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAI 237
PVGA FKEA++ G EVYH LK+ IKKKYG DATNVGDEGGFAPNI E L+LL TAI
Sbjct: 180 PVGAPSFKEALRYGAEVYHTLKSEIKKKYGIDATNVGDEGGFAPNILNANEALDLLVTAI 239
Query: 238 AKAGYTGKVVIGMDVAASEFYGSD-KTYDLNFKEENNDGSQKISGDALKDLYKSFISDYP 296
AGY GKV I MDVAASEFY S+ KTYDL+FK NND S +G L DLY + YP
Sbjct: 240 KSAGYEGKVKIAMDVAASEFYNSENKTYDLDFKTPNNDKSLVKTGAQLVDLYIDLVKKYP 299
Query: 297 IVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356
IVSIEDPFDQDDWE+YAKLT+ +G+ VQIVGDDLLVTNP R+ KA+++ CNALLLKVNQ
Sbjct: 300 IVSIEDPFDQDDWENYAKLTAAIGKDVQIVGDDLLVTNPTRITKALEKNACNALLLKVNQ 359
Query: 357 IGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAK 416
IGS+TE+IEA +S++ WGVM SHRSGETED FIADL V L TGQIKTGAPCRSER AK
Sbjct: 360 IGSITEAIEACLLSQKNNWGVMVSHRSGETEDVFIADLVVALRTGQIKTGAPCRSERNAK 419
Query: 417 YNQLLRIEEELGAEAVYAGAKFR 439
YNQLLRIEE LG AV+AG KFR
Sbjct: 420 YNQLLRIEESLGNNAVFAGEKFR 442
|
|
| UNIPROTKB|Q8IJN7 ENO "Enolase" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 1539 (546.8 bits), Expect = 6.1e-158, P = 6.1e-158
Identities = 307/443 (69%), Positives = 352/443 (79%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDY 59
MA IT + AR+I DSRGNPTVEVD+ T+ G + RAAVPSGASTGIYEALELRD S Y
Sbjct: 1 MAHVITRINAREILDSRGNPTVEVDLETNLG-IFRAAVPSGASTGIYEALELRDNDKSRY 59
Query: 60 LGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILA 119
LGKGV KA+ N+N II P L G + TEQ IDN MV++LDG+ NEWGW K KLGANAILA
Sbjct: 60 LGKGVQKAIKNINEIIAPKLIGMNCTEQKKIDNLMVEELDGSKNEWGWSKSKLGANAILA 119
Query: 120 VSLAVCKAGAHVKKIPLYKHIAELSGNKN--LVLPVPAFNVINGGSHAGNKLAMQEFMIL 177
+S+AVC+AGA K+ LYK++A+L+G K+ +VLPVP NVINGGSHAGNKL+ QEFMI+
Sbjct: 120 ISMAVCRAGAAANKVSLYKYLAQLAGKKSDQMVLPVPCLNVINGGSHAGNKLSFQEFMIV 179
Query: 178 PVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAI 237
PVGA FKEA++ G EVYH LK+ IKKKYG DATNVGDEGGFAPNI E L+LL TAI
Sbjct: 180 PVGAPSFKEALRYGAEVYHTLKSEIKKKYGIDATNVGDEGGFAPNILNANEALDLLVTAI 239
Query: 238 AKAGYTGKVVIGMDVAASEFYGSD-KTYDLNFKEENNDGSQKISGDALKDLYKSFISDYP 296
AGY GKV I MDVAASEFY S+ KTYDL+FK NND S +G L DLY + YP
Sbjct: 240 KSAGYEGKVKIAMDVAASEFYNSENKTYDLDFKTPNNDKSLVKTGAQLVDLYIDLVKKYP 299
Query: 297 IVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356
IVSIEDPFDQDDWE+YAKLT+ +G+ VQIVGDDLLVTNP R+ KA+++ CNALLLKVNQ
Sbjct: 300 IVSIEDPFDQDDWENYAKLTAAIGKDVQIVGDDLLVTNPTRITKALEKNACNALLLKVNQ 359
Query: 357 IGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAK 416
IGS+TE+IEA +S++ WGVM SHRSGETED FIADL V L TGQIKTGAPCRSER AK
Sbjct: 360 IGSITEAIEACLLSQKNNWGVMVSHRSGETEDVFIADLVVALRTGQIKTGAPCRSERNAK 419
Query: 417 YNQLLRIEEELGAEAVYAGAKFR 439
YNQLLRIEE LG AV+AG KFR
Sbjct: 420 YNQLLRIEESLGNNAVFAGEKFR 442
|
|
| RGD|2553 Eno1 "enolase 1, (alpha)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1528 (542.9 bits), Expect = 8.9e-157, P = 8.9e-157
Identities = 308/443 (69%), Positives = 361/443 (81%)
Query: 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLG 61
++I + AR+IFDSRGNPTVEVD+ T+ G + RAAVPSGASTGIYEALELRD ++G
Sbjct: 1 MSILKIHAREIFDSRGNPTVEVDLYTAKG-LFRAAVPSGASTGIYEALELRDNDKTRFMG 59
Query: 62 KGVSKAVSNVNAIIGPALAGK--DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILA 119
KGVSKAV ++N I PAL K + EQ ID M++ +DGT N K K GANAIL
Sbjct: 60 KGVSKAVEHINKTIAPALVSKKLNVVEQEKIDQLMIE-MDGTEN-----KSKFGANAILG 113
Query: 120 VSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPV 179
VSLAVCKAGA K +PLY+HIA+L+GN ++LPVPAFNVINGGSHAGNKLAMQEFMILPV
Sbjct: 114 VSLAVCKAGAVEKGVPLYRHIADLAGNPEVILPVPAFNVINGGSHAGNKLAMQEFMILPV 173
Query: 180 GASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAK 239
GAS F+EAM++G EVYH+LK VIK+KYG+DATNVGDEGGFAPNI ENKE LELL +AIAK
Sbjct: 174 GASSFREAMRIGAEVYHNLKNVIKEKYGKDATNVGDEGGFAPNILENKEALELLKSAIAK 233
Query: 240 AGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVS 299
AGYT +VVIGMDVAASEFY + K YDL+FK + D S+ I+ D L DLYKSFI DYP+VS
Sbjct: 234 AGYTDQVVIGMDVAASEFYRAGK-YDLDFKSPD-DASRYITPDQLADLYKSFIKDYPVVS 291
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
IEDPFDQDDW+ + K T+ G +Q+VGDDL VTNPKR+ KA EK+CN LLLKVNQIGS
Sbjct: 292 IEDPFDQDDWDAWQKFTATAG--IQVVGDDLTVTNPKRIAKAAGEKSCNCLLLKVNQIGS 349
Query: 360 VTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQ 419
VTES++A ++++ GWGVM SHRSGETEDTFIADL VGL TGQIKTGAPCRSERLAKYNQ
Sbjct: 350 VTESLQACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQ 409
Query: 420 LLRIEEELGAEAVYAGAKFRAPV 442
+LRIEEELG++A +AG FR P+
Sbjct: 410 ILRIEEELGSKAKFAGRSFRNPL 432
|
|
| WB|WBGene00011884 enol-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 1528 (542.9 bits), Expect = 8.9e-157, P = 8.9e-157
Identities = 314/440 (71%), Positives = 357/440 (81%)
Query: 5 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKG 63
IT + ARQI+DSRGNPTVEVD+ T G V RAAVPSGASTG++EALELRDG +LGKG
Sbjct: 3 ITKIHARQIYDSRGNPTVEVDLFTEKG-VFRAAVPSGASTGVHEALELRDGDKAVHLGKG 61
Query: 64 VSKAVSNVNAIIGPALAGK--DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVS 121
V KAVSN+N I PAL K D T Q ID++M+ LDG+ N K LGANAIL VS
Sbjct: 62 VLKAVSNINEKIAPALIAKGFDVTAQKDIDDFMMA-LDGSEN-----KGNLGANAILGVS 115
Query: 122 LAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGA 181
LAV KAGA K +PLYK+IAEL+G +VLPVPAFNVINGGSHAGNKLAMQEFMILPVGA
Sbjct: 116 LAVAKAGAVHKGLPLYKYIAELAGTGKVVLPVPAFNVINGGSHAGNKLAMQEFMILPVGA 175
Query: 182 SCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAG 241
S F EAM+MG EVYHHLKA IKK+YG DAT VGDEGGFAPNIQ+NKEGL+LLNTAI KAG
Sbjct: 176 SSFAEAMRMGSEVYHHLKAEIKKRYGLDATAVGDEGGFAPNIQDNKEGLDLLNTAIDKAG 235
Query: 242 YTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIE 301
YTGK+ IGMDVAASEF+ D YDL+FK +D S+ +SG+ L +LY+SFI +YP+VSIE
Sbjct: 236 YTGKISIGMDVAASEFF-KDGKYDLDFKNPASDSSKWLSGEQLTELYQSFIKEYPVVSIE 294
Query: 302 DPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVT 361
D FDQDDW+++ K +Q+VGDDL VTNPKR++ AI +K+CN LLLKVNQIGSVT
Sbjct: 295 DAFDQDDWDNWGKFHGATS--IQLVGDDLTVTNPKRIQTAIDKKSCNCLLLKVNQIGSVT 352
Query: 362 ESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLL 421
ESIEA ++S+ GWGVM SHRSGETEDTFIADL VGLATGQIKTGAPCRSERLAKYNQLL
Sbjct: 353 ESIEAAKLSRANGWGVMVSHRSGETEDTFIADLVVGLATGQIKTGAPCRSERLAKYNQLL 412
Query: 422 RIEEELGAEAVYAGAKFRAP 441
RIEEELGA+AVYAG FR P
Sbjct: 413 RIEEELGADAVYAGHNFRNP 432
|
|
| UNIPROTKB|F1MB08 ENO1 "Alpha-enolase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1527 (542.6 bits), Expect = 1.1e-156, P = 1.1e-156
Identities = 309/443 (69%), Positives = 359/443 (81%)
Query: 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLG 61
++I V AR+IFDSRGNPTVEVD+ T+ G + RAAVPSGASTGIYEALELRD Y+G
Sbjct: 1 MSILKVHAREIFDSRGNPTVEVDLFTAKG-LFRAAVPSGASTGIYEALELRDNDKTRYMG 59
Query: 62 KGVSKAVSNVNAIIGPALAGK--DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILA 119
KGVSKAV ++N I PAL K + EQ ID M++ +DGT N K K GANAIL
Sbjct: 60 KGVSKAVEHINKTIAPALVSKKLNVVEQEKIDKLMIE-MDGTEN-----KSKFGANAILG 113
Query: 120 VSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPV 179
VSLAVCKAGA K +PLY+HIA+L+GN ++LPVPAFNVINGGSHAGNKLAMQEFMILPV
Sbjct: 114 VSLAVCKAGAVEKGVPLYRHIADLAGNAEVILPVPAFNVINGGSHAGNKLAMQEFMILPV 173
Query: 180 GASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAK 239
GA F+EAM++G EVYH+LK VIK+KYG+DATNVGDEGGFAPNI ENKE LELL AI K
Sbjct: 174 GAENFREAMRIGAEVYHNLKNVIKEKYGKDATNVGDEGGFAPNILENKEALELLKNAIGK 233
Query: 240 AGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVS 299
AGY+ KVVIGMDVAASEFY S K YDL+FK + D S+ I+ D L +LYKSFI DYP+VS
Sbjct: 234 AGYSDKVVIGMDVAASEFYRSGK-YDLDFKSPD-DPSRYITPDELANLYKSFIRDYPVVS 291
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
IEDPFDQDDWE + K T+ G +Q+VGDDL VTNPKR+ KA+ EK+CN LLLKVNQIGS
Sbjct: 292 IEDPFDQDDWEAWQKFTASAG--IQVVGDDLTVTNPKRIAKAVSEKSCNCLLLKVNQIGS 349
Query: 360 VTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQ 419
VTES++A ++++ GWGVM SHRSGETEDTFIADL VGL TGQIKTGAPCRSERLAKYNQ
Sbjct: 350 VTESLQACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQ 409
Query: 420 LLRIEEELGAEAVYAGAKFRAPV 442
+LRIEEELG++A +AG FR P+
Sbjct: 410 ILRIEEELGSKAKFAGRSFRNPL 432
|
|
| UNIPROTKB|F1NZ78 ENO1 "Alpha-enolase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1524 (541.5 bits), Expect = 2.4e-156, P = 2.4e-156
Identities = 310/442 (70%), Positives = 358/442 (80%)
Query: 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLG 61
++I + AR+IFDSRGNPTVEVD+ T+ G + RAAVPSGASTGIYEALELRD YLG
Sbjct: 1 MSILKIHAREIFDSRGNPTVEVDLYTNKG-LFRAAVPSGASTGIYEALELRDNDKTRYLG 59
Query: 62 KGVSKAVSNVNAIIGPALAGKDPT--EQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILA 119
KGVSKAV +VN I PAL K+ EQ ID M++ +DGT N K K GANAIL
Sbjct: 60 KGVSKAVEHVNKTIAPALISKNVNVVEQEKIDKLMLE-MDGTEN-----KSKFGANAILG 113
Query: 120 VSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPV 179
VSLAVCKAGA K +PLY+HIA+L+GN ++LPVPAFNVINGGSHAGNKLAMQEFMILPV
Sbjct: 114 VSLAVCKAGAAEKGVPLYRHIADLAGNPEVILPVPAFNVINGGSHAGNKLAMQEFMILPV 173
Query: 180 GASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAK 239
GA FKEAM++G EVYH+LK VIK+KYG+DATNVGDEGGFAPNI ENKE LELL TAI K
Sbjct: 174 GADNFKEAMRIGAEVYHNLKNVIKEKYGKDATNVGDEGGFAPNILENKEALELLKTAIGK 233
Query: 240 AGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVS 299
AGY+ KVVIGMDVAASEFY K YDL+FK + D S+ IS D L DLYK F+ +YP+VS
Sbjct: 234 AGYSDKVVIGMDVAASEFYRDGK-YDLDFKSPD-DPSRYISPDQLADLYKGFVKNYPVVS 291
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
IEDPFDQ+DW + K T+ VG +Q+VGDDL VTNPKR+ KA++EK+CN LLLKVNQIGS
Sbjct: 292 IEDPFDQNDWAAWKKFTASVG--IQVVGDDLTVTNPKRIAKAVEEKSCNCLLLKVNQIGS 349
Query: 360 VTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQ 419
VTES++A ++++ GWGVM SHRSGETEDTFIADL VGL TGQIKTGAPCRSERLAKYNQ
Sbjct: 350 VTESLQACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQ 409
Query: 420 LLRIEEELGAEAVYAGAKFRAP 441
LLRIEEELG++A +AG FR P
Sbjct: 410 LLRIEEELGSKARFAGRNFRNP 431
|
|
| UNIPROTKB|P51913 ENO1 "Alpha-enolase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1524 (541.5 bits), Expect = 2.4e-156, P = 2.4e-156
Identities = 310/442 (70%), Positives = 357/442 (80%)
Query: 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLG 61
++I + AR+IFDSRGNPTVEVD+ T+ G + RAAVPSGASTGIYEALELRD YLG
Sbjct: 1 MSILKIHAREIFDSRGNPTVEVDLYTNKG-LFRAAVPSGASTGIYEALELRDNDKTRYLG 59
Query: 62 KGVSKAVSNVNAIIGPALAGKDPT--EQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILA 119
KGVSKAV +VN I PAL K+ EQ ID M++ +DGT N K K GANAIL
Sbjct: 60 KGVSKAVEHVNKTIAPALISKNVNVVEQEKIDKLMLE-MDGTEN-----KSKFGANAILG 113
Query: 120 VSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPV 179
VSLAVCKAGA K +PLY+HIA+L+GN ++LPVPAFNVINGGSHAGNKLAMQEFMILPV
Sbjct: 114 VSLAVCKAGAAEKGVPLYRHIADLAGNPEVILPVPAFNVINGGSHAGNKLAMQEFMILPV 173
Query: 180 GASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAK 239
GA FKEAM++G EVYH+LK VIK+KYG+DATNVGDEGGFAPNI ENKE LELL TAI K
Sbjct: 174 GADTFKEAMRIGAEVYHNLKNVIKEKYGKDATNVGDEGGFAPNILENKEALELLKTAIGK 233
Query: 240 AGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVS 299
AGY+ KVVIGMDVAASEFY K YDL+FK + D S+ IS D L DLY F+ +YP+VS
Sbjct: 234 AGYSDKVVIGMDVAASEFYRDGK-YDLDFKSPD-DPSRYISPDQLADLYLGFVKNYPVVS 291
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
IEDPFDQDDW + K T+ VG +Q+VGDDL VTNPKR+ KA++EK+CN LLLKVNQIGS
Sbjct: 292 IEDPFDQDDWAAWKKFTASVG--IQVVGDDLTVTNPKRIAKAVEEKSCNCLLLKVNQIGS 349
Query: 360 VTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQ 419
VTES++A ++++ GWGVM SHRSGETEDTFIADL VGL TGQIKTGAPCRSERLAKYNQ
Sbjct: 350 VTESLQACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQ 409
Query: 420 LLRIEEELGAEAVYAGAKFRAP 441
LLRIEEELG++A +AG FR P
Sbjct: 410 LLRIEEELGSKARFAGRNFRNP 431
|
|
| ZFIN|ZDB-GENE-040426-1651 eno1b "enolase 1b, (alpha)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1521 (540.5 bits), Expect = 4.9e-156, P = 4.9e-156
Identities = 310/443 (69%), Positives = 356/443 (80%)
Query: 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLG 61
++I + AR+IFDSRGNPTVEVD+ T G + RAAVPSGASTGIYEALELRD S YLG
Sbjct: 1 MSILKIHAREIFDSRGNPTVEVDLYTERG-LFRAAVPSGASTGIYEALELRDNDKSRYLG 59
Query: 62 KGVSKAVSNVNAIIGPALAGKD-PT-EQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILA 119
KGVSKAV NVN I PAL G+ P EQ ID +M++ LDGT N K + GANAIL
Sbjct: 60 KGVSKAVENVNQHIAPALIGQGIPVVEQEKIDQFMLE-LDGTEN-----KSRFGANAILG 113
Query: 120 VSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPV 179
VSLA CKAGA K +PLY+HIA+L+GN ++LPVPAFNVINGGSHAGNKLAMQEFMILPV
Sbjct: 114 VSLAACKAGAAEKGVPLYRHIADLAGNPEVILPVPAFNVINGGSHAGNKLAMQEFMILPV 173
Query: 180 GASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAK 239
GAS FKEAM++G EVYH+LK VIK+KYGQDATNVGDEGGFAPNI ENKE LELL AI+K
Sbjct: 174 GASSFKEAMRIGAEVYHNLKNVIKQKYGQDATNVGDEGGFAPNILENKEALELLKNAISK 233
Query: 240 AGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVS 299
AGYT +VVIGMDVAASEFY D YDL+FK + D + IS D L DLYKSFI DYP+VS
Sbjct: 234 AGYTDEVVIGMDVAASEFY-RDGQYDLDFKSPD-DPDRYISPDELADLYKSFIEDYPVVS 291
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
IEDPFDQDDWE + T+ ++Q+VGDDL VTNPKR+ A++ + CN LLLKVNQIG+
Sbjct: 292 IEDPFDQDDWEAWTNFTNST--EIQVVGDDLTVTNPKRIATAVENEACNCLLLKVNQIGT 349
Query: 360 VTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQ 419
VTES++A M++ +GWGVM SHRSGETEDTFIADL VGL TGQIKTGAPCRSERLAKYNQ
Sbjct: 350 VTESLQACNMAQSSGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQ 409
Query: 420 LLRIEEELGAEAVYAGAKFRAPV 442
+LRIEEELG +A +AG FR P+
Sbjct: 410 ILRIEEELGEKARFAGKNFRNPL 432
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P19140 | ENOA_ANAPL | 4, ., 2, ., 1, ., 1, 1 | 0.6923 | 0.9617 | 0.9861 | N/A | no |
| O02654 | ENO_DORPE | 4, ., 2, ., 1, ., 1, 1 | 0.7049 | 0.9685 | 0.9930 | N/A | no |
| P17182 | ENOA_MOUSE | 4, ., 2, ., 1, ., 1, 1 | 0.6930 | 0.9640 | 0.9884 | yes | no |
| P42896 | ENO_RICCO | 4, ., 2, ., 1, ., 1, 1 | 0.9303 | 1.0 | 1.0 | N/A | no |
| P42895 | ENO2_MAIZE | 4, ., 2, ., 1, ., 1, 1 | 0.8811 | 1.0 | 0.9977 | N/A | no |
| Q9LEI9 | ENO2_HEVBR | 4, ., 2, ., 1, ., 1, 1 | 0.9191 | 1.0 | 1.0 | N/A | no |
| P06733 | ENOA_HUMAN | 4, ., 2, ., 1, ., 1, 1 | 0.7088 | 0.9640 | 0.9884 | yes | no |
| Q9W7L1 | ENOA_TRASC | 4, ., 2, ., 1, ., 1, 1 | 0.6990 | 0.9617 | 0.9861 | N/A | no |
| Q27877 | ENO_SCHMA | 4, ., 2, ., 1, ., 1, 1 | 0.6855 | 0.9640 | 0.9884 | N/A | no |
| P15007 | ENO_DROME | 4, ., 2, ., 1, ., 1, 1 | 0.6832 | 0.9640 | 0.858 | yes | no |
| Q43321 | ENO_ALNGL | 4, ., 2, ., 1, ., 1, 1 | 0.8891 | 0.9797 | 0.9909 | N/A | no |
| Q27527 | ENO_CAEEL | 4, ., 2, ., 1, ., 1, 1 | 0.7104 | 0.9640 | 0.9884 | yes | no |
| Q9BPL7 | ENO2_TOXGO | 4, ., 2, ., 1, ., 1, 1 | 0.6884 | 0.9842 | 0.9864 | N/A | no |
| P33676 | ENO_SCHJA | 4, ., 2, ., 1, ., 1, 1 | 0.6809 | 0.9640 | 0.9884 | N/A | no |
| O74286 | ENO_CUNEL | 4, ., 2, ., 1, ., 1, 1 | 0.6863 | 0.9573 | 0.9770 | N/A | no |
| Q9PVK2 | ENOA_ALLMI | 4, ., 2, ., 1, ., 1, 1 | 0.6900 | 0.9617 | 0.9861 | N/A | no |
| Q8IJN7 | ENO_PLAF7 | 4, ., 2, ., 1, ., 1, 1 | 0.6930 | 0.9842 | 0.9820 | yes | no |
| Q7RA60 | ENO_PLAYO | 4, ., 2, ., 1, ., 1, 1 | 0.6828 | 0.9595 | 0.9617 | N/A | no |
| Q5R6Y1 | ENOA_PONAB | 4, ., 2, ., 1, ., 1, 1 | 0.7065 | 0.9640 | 0.9884 | yes | no |
| Q9LEJ0 | ENO1_HEVBR | 4, ., 2, ., 1, ., 1, 1 | 0.9168 | 1.0 | 1.0 | N/A | no |
| P56252 | ENO_HOMGA | 4, ., 2, ., 1, ., 1, 1 | 0.6825 | 0.9640 | 0.9907 | N/A | no |
| Q27655 | ENO_FASHE | 4, ., 2, ., 1, ., 1, 1 | 0.7006 | 0.9640 | 0.9953 | N/A | no |
| Q42971 | ENO_ORYSJ | 4, ., 2, ., 1, ., 1, 1 | 0.8789 | 1.0 | 0.9977 | yes | no |
| P04764 | ENOA_RAT | 4, ., 2, ., 1, ., 1, 1 | 0.6952 | 0.9640 | 0.9884 | yes | no |
| Q43130 | ENO_MESCR | 4, ., 2, ., 1, ., 1, 1 | 0.8781 | 0.9955 | 0.9977 | N/A | no |
| Q9W7L2 | ENOA_SCEUN | 4, ., 2, ., 1, ., 1, 1 | 0.6855 | 0.9617 | 0.9861 | N/A | no |
| P42894 | ENO_NEOFR | 4, ., 2, ., 1, ., 1, 1 | 0.6952 | 0.9685 | 0.9885 | N/A | no |
| P51913 | ENOA_CHICK | 4, ., 2, ., 1, ., 1, 1 | 0.7013 | 0.9617 | 0.9861 | yes | no |
| Q967Y8 | ENO_EIMTE | 4, ., 2, ., 1, ., 1, 1 | 0.6523 | 0.9842 | 0.9842 | N/A | no |
| Q27727 | ENO_PLAFA | 4, ., 2, ., 1, ., 1, 1 | 0.6930 | 0.9842 | 0.9820 | yes | no |
| P25696 | ENO2_ARATH | 4, ., 2, ., 1, ., 1, 1 | 0.8800 | 0.9932 | 0.9954 | yes | no |
| Q9W7L0 | ENOA_PYTRG | 4, ., 2, ., 1, ., 1, 1 | 0.6968 | 0.9617 | 0.9861 | N/A | no |
| Q9XSJ4 | ENOA_BOVIN | 4, ., 2, ., 1, ., 1, 1 | 0.6952 | 0.9640 | 0.9884 | yes | no |
| Q4R5L2 | ENOA_MACFA | 4, ., 2, ., 1, ., 1, 1 | 0.7088 | 0.9640 | 0.9884 | N/A | no |
| Q54RK5 | ENOA_DICDI | 4, ., 2, ., 1, ., 1, 1 | 0.7 | 0.9573 | 0.9815 | yes | no |
| Q9UAL5 | ENO_PLAFG | 4, ., 2, ., 1, ., 1, 1 | 0.6907 | 0.9842 | 0.9820 | N/A | no |
| P08734 | ENOA_XENLA | 4, ., 2, ., 1, ., 1, 1 | 0.6884 | 0.9640 | 0.9884 | N/A | no |
| P26301 | ENO1_MAIZE | 4, ., 2, ., 1, ., 1, 1 | 0.8923 | 1.0 | 0.9977 | N/A | no |
| P26300 | ENO_SOLLC | 4, ., 2, ., 1, ., 1, 1 | 0.8868 | 0.9932 | 0.9954 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 445 | |||
| PLN00191 | 457 | PLN00191, PLN00191, enolase | 0.0 | |
| PTZ00081 | 439 | PTZ00081, PTZ00081, enolase; Provisional | 0.0 | |
| cd03313 | 408 | cd03313, enolase, Enolase: Enolases are homodimeri | 0.0 | |
| PRK00077 | 425 | PRK00077, eno, enolase; Provisional | 0.0 | |
| COG0148 | 423 | COG0148, Eno, Enolase [Carbohydrate transport and | 0.0 | |
| TIGR01060 | 425 | TIGR01060, eno, phosphopyruvate hydratase | 0.0 | |
| pfam00113 | 296 | pfam00113, Enolase_C, Enolase, C-terminal TIM barr | 0.0 | |
| pfam03952 | 132 | pfam03952, Enolase_N, Enolase, N-terminal domain | 3e-73 | |
| PRK08350 | 341 | PRK08350, PRK08350, hypothetical protein; Provisio | 2e-16 | |
| cd00308 | 229 | cd00308, enolase_like, Enolase-superfamily, charac | 4e-16 | |
| cd03317 | 354 | cd03317, NAAAR, N-acylamino acid racemase (NAAAR), | 7e-04 | |
| cd03321 | 355 | cd03321, mandelate_racemase, Mandelate racemase (M | 0.002 |
| >gnl|CDD|215095 PLN00191, PLN00191, enolase | Back alignment and domain information |
|---|
Score = 879 bits (2273), Expect = 0.0
Identities = 365/443 (82%), Positives = 385/443 (86%), Gaps = 9/443 (2%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
+ TIT VKARQI DSRGNPTVEVD+ TS G RAAVPSGASTGIYEALELRDG DYL
Sbjct: 24 VMATITKVKARQIIDSRGNPTVEVDLHTSKGM-FRAAVPSGASTGIYEALELRDGDKDYL 82
Query: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GKGV KAV NVN II PAL G DPT+QT IDN+M++ LDGT N K KLGANAILAV
Sbjct: 83 GKGVLKAVKNVNEIIAPALIGMDPTDQTQIDNFMLE-LDGTPN-----KGKLGANAILAV 136
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
SLAVCKAGA K +PLYKHIA+L+GNK LVLPVPAFNVINGGSHAGNKLAMQEFMILPVG
Sbjct: 137 SLAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 196
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
AS FKEAM+MG EVYHHLKAVIKKKYGQDA NVGDEGGFAPNIQ+NKEGLELL AI KA
Sbjct: 197 ASSFKEAMQMGSEVYHHLKAVIKKKYGQDACNVGDEGGFAPNIQDNKEGLELLKEAIEKA 256
Query: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
GYTGK+ IGMDVAASEFY DK YDL+FKEENNDGS K SGD L DLYK F+SDYPIVSI
Sbjct: 257 GYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSI 316
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
EDPFDQDDWEH+AKLTS E VQIVGDDLLVTNPKRV KAI+EK CNALLLKVNQIG+V
Sbjct: 317 EDPFDQDDWEHWAKLTSL--EDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTV 374
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
TESIEAV+MSK AGWGVM SHRSGETED+FIADL+VGLATGQIKTGAPCRSERLAKYNQL
Sbjct: 375 TESIEAVKMSKAAGWGVMTSHRSGETEDSFIADLAVGLATGQIKTGAPCRSERLAKYNQL 434
Query: 421 LRIEEELGAEAVYAGAKFRAPVE 443
LRIEEELG EAVYAG FR PV
Sbjct: 435 LRIEEELGDEAVYAGENFRKPVW 457
|
Length = 457 |
| >gnl|CDD|240259 PTZ00081, PTZ00081, enolase; Provisional | Back alignment and domain information |
|---|
Score = 781 bits (2020), Expect = 0.0
Identities = 319/438 (72%), Positives = 362/438 (82%), Gaps = 5/438 (1%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGK 62
TI ++KAR+I DSRGNPTVEVD+TT G V RAAVPSGASTGIYEALELRDG S YLGK
Sbjct: 3 TIKSIKAREILDSRGNPTVEVDLTTEKG-VFRAAVPSGASTGIYEALELRDGDKSRYLGK 61
Query: 63 GVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSL 122
GV KAV NVN II PAL GKD T+Q +D MV+QLDGT NEWGWCK KLGANAILAVS+
Sbjct: 62 GVLKAVENVNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSM 121
Query: 123 AVCKAGAHVKKIPLYKHIAELSGN--KNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
AV +A A K +PLYK++A+L+G VLPVP FNVINGG HAGNKLA QEFMI PVG
Sbjct: 122 AVARAAAAAKGVPLYKYLAQLAGKPTDKFVLPVPCFNVINGGKHAGNKLAFQEFMIAPVG 181
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
A FKEA++MG EVYH LK+VIKKKYG DATNVGDEGGFAPNI++ +E L+LL AI KA
Sbjct: 182 APSFKEALRMGAEVYHSLKSVIKKKYGLDATNVGDEGGFAPNIKDPEEALDLLVEAIKKA 241
Query: 241 GYTGKVVIGMDVAASEFYGSD-KTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVS 299
GY GKV I MDVAASEFY + K YDL+FK NND S K++G+ L +LY + YPIVS
Sbjct: 242 GYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPIVS 301
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
IEDPFDQDDWE YAKLT+ +G+KVQIVGDDLLVTNP R++KAI++K CNALLLKVNQIG+
Sbjct: 302 IEDPFDQDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGT 361
Query: 360 VTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQ 419
VTE+IEA +++++ GWGVM SHRSGETEDTFIADL VGL TGQIKTGAPCRSERLAKYNQ
Sbjct: 362 VTEAIEAAKLAQKNGWGVMVSHRSGETEDTFIADLVVGLGTGQIKTGAPCRSERLAKYNQ 421
Query: 420 LLRIEEELGAEAVYAGAK 437
LLRIEEELG+ AVYAG
Sbjct: 422 LLRIEEELGSNAVYAGEN 439
|
Length = 439 |
| >gnl|CDD|239429 cd03313, enolase, Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways | Back alignment and domain information |
|---|
Score = 742 bits (1919), Expect = 0.0
Identities = 269/423 (63%), Positives = 324/423 (76%), Gaps = 18/423 (4%)
Query: 7 AVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVS 65
+KAR+I DSRGNPTVEV+VTT DG V RAAVPSGASTG +EA+ELRDG YLGKGV
Sbjct: 1 KIKAREILDSRGNPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVL 60
Query: 66 KAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVC 125
KAV NVN II PAL G D T+Q AID +++ LDGT N K KLGANAIL VSLAV
Sbjct: 61 KAVKNVNEIIAPALIGMDVTDQRAIDKLLIE-LDGTPN-----KSKLGANAILGVSLAVA 114
Query: 126 KAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFK 185
KA A +PLY+++ G VLPVP FNVINGG+HAGNKL QEFMI+PVGA F
Sbjct: 115 KAAAAALGLPLYRYLG---GLAAYVLPVPMFNVINGGAHAGNKLDFQEFMIVPVGAPSFS 171
Query: 186 EAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTG- 244
EA++MG EVYH LK V+KKK G ATNVGDEGGFAPN+ N+E L+LL AI KAGY
Sbjct: 172 EALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPG 231
Query: 245 -KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDP 303
K+ I +DVAASEFY + Y + +D +K++ + L D YK + YPIVSIEDP
Sbjct: 232 KKIAIALDVAASEFY-DEGKYVYD-----SDEGKKLTSEELIDYYKELVKKYPIVSIEDP 285
Query: 304 FDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTES 363
FD+DDWE +AKLT+++G+K+QIVGDDL VTNP+R++K I++K NALL+KVNQIG++TE+
Sbjct: 286 FDEDDWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTET 345
Query: 364 IEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRI 423
IEA++++K+ G+GV+ SHRSGETEDTFIADL+V L GQIKTGAPCRSER AKYNQLLRI
Sbjct: 346 IEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAGQIKTGAPCRSERTAKYNQLLRI 405
Query: 424 EEE 426
EEE
Sbjct: 406 EEE 408
|
The reaction is facilitated by the presence of metal ions. Length = 408 |
| >gnl|CDD|234617 PRK00077, eno, enolase; Provisional | Back alignment and domain information |
|---|
Score = 670 bits (1731), Expect = 0.0
Identities = 243/438 (55%), Positives = 308/438 (70%), Gaps = 23/438 (5%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGK 62
I + AR+I DSRGNPTVEV+VT DG RAAVPSGASTG EA+ELRDG YLGK
Sbjct: 3 KIEDIIAREILDSRGNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGK 62
Query: 63 GVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSL 122
GV KAV NVN I PAL G D +Q AID M++ LDGT N K KLGANAIL VSL
Sbjct: 63 GVLKAVENVNEEIAPALIGLDALDQRAIDKAMIE-LDGTPN-----KSKLGANAILGVSL 116
Query: 123 AVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAS 182
AV KA A +PLY+++ G VLPVP N+INGG+HA N + +QEFMI+PVGA
Sbjct: 117 AVAKAAADSLGLPLYRYLG---GPNAKVLPVPMMNIINGGAHADNNVDIQEFMIMPVGAP 173
Query: 183 CFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGY 242
FKEA++MG EV+H LK V+K+K G +T VGDEGGFAPN++ N+E L+L+ AI KAGY
Sbjct: 174 SFKEALRMGAEVFHTLKKVLKEK-GL-STAVGDEGGFAPNLKSNEEALDLILEAIEKAGY 231
Query: 243 T-GK-VVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
G+ + + +D AASEFY D Y L + ++ + + D + YPIVSI
Sbjct: 232 KPGEDIALALDCAASEFY-KDGKYVL--------EGEGLTSEEMIDYLAELVDKYPIVSI 282
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
ED D++DWE + LT ++G+KVQ+VGDDL VTN KR++K I++ N++L+KVNQIG++
Sbjct: 283 EDGLDENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTL 342
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
TE+++A+ ++K+AG+ + SHRSGETEDT IADL+V GQIKTG+ RSER+AKYNQL
Sbjct: 343 TETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVATNAGQIKTGSLSRSERIAKYNQL 402
Query: 421 LRIEEELGAEAVYAGAKF 438
LRIEEELG A YAG K
Sbjct: 403 LRIEEELGDAARYAGKKA 420
|
Length = 425 |
| >gnl|CDD|223226 COG0148, Eno, Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 616 bits (1590), Expect = 0.0
Identities = 251/436 (57%), Positives = 314/436 (72%), Gaps = 22/436 (5%)
Query: 5 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGV 64
I V AR+I DSRGNPTVEV+VT DG RAAVPSGASTG +EA+ELRDG S YLGKGV
Sbjct: 4 IEDVIAREILDSRGNPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGDSRYLGKGV 63
Query: 65 SKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAV 124
KAV+NVN II PAL G D T+Q ID+ +++ LDGT N K KLGANAIL VSLAV
Sbjct: 64 LKAVANVNEIIAPALIGLDATDQALIDSLLIE-LDGTEN-----KSKLGANAILGVSLAV 117
Query: 125 CKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCF 184
KA A IPLY+++ G LVLPVP NVINGG+HA N L +QEFMI+PVGA F
Sbjct: 118 AKAAAASLGIPLYRYLG---GLNALVLPVPMMNVINGGAHADNNLDIQEFMIMPVGAESF 174
Query: 185 KEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTG 244
KEA++ G EV+HHLK ++K+K +T VGDEGGFAPN++ N+E L++L AI +AGY
Sbjct: 175 KEALRAGAEVFHHLKKLLKEK--GLSTGVGDEGGFAPNLKSNEEALDILVEAIEEAGYEP 232
Query: 245 K--VVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIED 302
+ + +DVAASEFY D Y L + ++ + L + Y + YPIVSIED
Sbjct: 233 GEDIALALDVAASEFY-KDGKYVLEGE--------SLTSEELIEYYLELVKKYPIVSIED 283
Query: 303 PFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTE 362
P +DDWE +A+LT +G+KVQIVGDDL VTNPKR++K I++ NA+L+K NQIG++TE
Sbjct: 284 PLSEDDWEGFAELTKRLGDKVQIVGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTE 343
Query: 363 SIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLR 422
++EA+ ++K AG+ + SHRSGETEDT IADL+V GQIKTG+ RSER+AKYN+LLR
Sbjct: 344 TLEAINLAKDAGYTAVISHRSGETEDTTIADLAVATNAGQIKTGSLSRSERVAKYNELLR 403
Query: 423 IEEELGAEAVYAGAKF 438
IEEELG +A YAG K
Sbjct: 404 IEEELGDKARYAGIKE 419
|
Length = 423 |
| >gnl|CDD|213580 TIGR01060, eno, phosphopyruvate hydratase | Back alignment and domain information |
|---|
Score = 577 bits (1490), Expect = 0.0
Identities = 236/440 (53%), Positives = 301/440 (68%), Gaps = 19/440 (4%)
Query: 5 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKG 63
I ++AR+I DSRGNPTVEV+V DG RAAVPSGASTG EALELRDG YLGKG
Sbjct: 1 IVDIRAREILDSRGNPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKG 60
Query: 64 VSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLA 123
V KAV NVN II P L G D T+Q ID +++ LDGT N K KLGANAIL VS+A
Sbjct: 61 VLKAVENVNEIIAPELIGMDATDQREIDQILIE-LDGTPN-----KSKLGANAILGVSMA 114
Query: 124 VCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASC 183
V KA A +PLY++ L G VLPVP N+INGG+HA N L QEFMI+PVGA
Sbjct: 115 VAKAAADSLGLPLYRY---LGGFNAYVLPVPMMNIINGGAHADNNLDFQEFMIMPVGAPS 171
Query: 184 FKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYT 243
F+EA++MG EV+H LK ++K+K AT VGDEGGFAPN+ N+E LE++ AI KAGY
Sbjct: 172 FREALRMGAEVFHALKKLLKEKG--LATGVGDEGGFAPNLASNEEALEIIVEAIEKAGYK 229
Query: 244 -GK-VVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIE 301
G+ V + +D AASEFY + + E S++ + + Y+ + YPI+SIE
Sbjct: 230 PGEDVALALDCAASEFYDEEDGKYVYKGENKQLTSEE-----MIEYYEELVEKYPIISIE 284
Query: 302 DPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVT 361
D ++DWE +A+LT +G+KVQIVGDDL VTN + + + I+ N++L+K NQIG++T
Sbjct: 285 DGLSEEDWEGWAELTKRLGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLT 344
Query: 362 ESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLL 421
E+++A+ ++K+AG+ + SHRSGETEDT IADL+V GQIKTG+ RSER+AKYNQLL
Sbjct: 345 ETLDAIELAKKAGYTAVISHRSGETEDTTIADLAVATNAGQIKTGSLSRSERIAKYNQLL 404
Query: 422 RIEEELGAEAVYAGAKFRAP 441
RIEEELG A YAG
Sbjct: 405 RIEEELGDSARYAGKNSFYR 424
|
Alternate name: enolase [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 425 |
| >gnl|CDD|109180 pfam00113, Enolase_C, Enolase, C-terminal TIM barrel domain | Back alignment and domain information |
|---|
Score = 555 bits (1431), Expect = 0.0
Identities = 220/295 (74%), Positives = 246/295 (83%), Gaps = 1/295 (0%)
Query: 149 LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQ 208
VLPVP NVINGGSHAGNKLAMQEFMILP GAS F EAM+MG EVYH+LK+VIK KYGQ
Sbjct: 2 YVLPVPMMNVINGGSHAGNKLAMQEFMILPTGASSFTEAMRMGSEVYHNLKSVIKAKYGQ 61
Query: 209 DATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGS-DKTYDLN 267
DATNVGDEGGFAPNIQ NKE L+L+ AI KAGYTGKV I MDVA+SEFY D YDL+
Sbjct: 62 DATNVGDEGGFAPNIQSNKEALDLIVEAIEKAGYTGKVKIAMDVASSEFYNKKDGKYDLD 121
Query: 268 FKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVG 327
FK +D S+ ++ D L DLYK I YPIVSIEDPFD+DDWE + KLT+ +G+K+QIVG
Sbjct: 122 FKNPKSDPSKWLTSDQLADLYKELIKKYPIVSIEDPFDEDDWEAWKKLTASLGDKIQIVG 181
Query: 328 DDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETE 387
DDL VTNPKR+ KAI++K CN+LLLKVNQIGSVTES+ AV+M+K AGWGVM SHRSGETE
Sbjct: 182 DDLTVTNPKRIAKAIEKKACNSLLLKVNQIGSVTESLAAVKMAKDAGWGVMVSHRSGETE 241
Query: 388 DTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFRAPV 442
DTFIADL VGL GQIKTGAPCRSERLAKYNQLLRIEEELG++A YAG FR P
Sbjct: 242 DTFIADLVVGLNAGQIKTGAPCRSERLAKYNQLLRIEEELGSKAKYAGRNFRKPQ 296
|
Length = 296 |
| >gnl|CDD|202827 pfam03952, Enolase_N, Enolase, N-terminal domain | Back alignment and domain information |
|---|
Score = 225 bits (577), Expect = 3e-73
Identities = 86/138 (62%), Positives = 99/138 (71%), Gaps = 7/138 (5%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGK 62
TIT + AR+I DSRGNPTVEV+VT DG RAAVPSGASTG +EA+ELRDG Y GK
Sbjct: 1 TITKIHAREILDSRGNPTVEVEVTLEDGTFGRAAVPSGASTGSHEAVELRDGDKSRYGGK 60
Query: 63 GVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSL 122
GV KAV NVN II PAL G D +Q AID ++ +LDGT N K KLGANAILAVSL
Sbjct: 61 GVLKAVENVNEIIAPALIGMDARDQRAIDKTLI-ELDGTPN-----KSKLGANAILAVSL 114
Query: 123 AVCKAGAHVKKIPLYKHI 140
AV KA A +PLY+++
Sbjct: 115 AVAKAAAAALGLPLYRYL 132
|
Length = 132 |
| >gnl|CDD|169397 PRK08350, PRK08350, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 2e-16
Identities = 55/137 (40%), Positives = 71/137 (51%), Gaps = 23/137 (16%)
Query: 18 GNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGP 77
G +VEVDV T G R A P + +Y A E +AVS V+ IIGP
Sbjct: 17 GKYSVEVDVITDSG-FGRFAAPIDENPSLYIA-EAH------------RAVSEVDEIIGP 62
Query: 78 ALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLY 137
L G D +EQ ID+Y+ ++DGT + +GAN LAVS+AV KA A+ K +PLY
Sbjct: 63 ELIGFDASEQELIDSYL-WEIDGTED-----FSHIGANTALAVSVAVAKAAANSKNMPLY 116
Query: 138 KHIAELSGNKNLVLPVP 154
+I G LPVP
Sbjct: 117 SYIG---GTFTTELPVP 130
|
Length = 341 |
| >gnl|CDD|238188 cd00308, enolase_like, Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 4e-16
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 5/126 (3%)
Query: 274 DGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVT 333
D + + L ++ + Y + IE+P DD E YA L G + I D+ + T
Sbjct: 100 DANGAWTPKEAIRLIRA-LEKYGLAWIEEPCAPDDLEGYAALRRRTG--IPIAADESVTT 156
Query: 334 NPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSG-ETEDTFIA 392
+E A++ + L +K ++G +TES A +++ G VM
Sbjct: 157 VDDALE-ALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESSIGTAAAL 215
Query: 393 DLSVGL 398
L+ L
Sbjct: 216 HLAAAL 221
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. Length = 229 |
| >gnl|CDD|239433 cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+Y ++ IE P DD +A+L + K I D+ + + + KAI+ C + +K
Sbjct: 202 EYGLLMIEQPLAADDLIDHAELQKLL--KTPICLDES-IQSAEDARKAIELGACKIINIK 258
Query: 354 VNQIGSVTESIEAVRMSKQAGWGV 377
++G +TE+++ + ++ G V
Sbjct: 259 PGRVGGLTEALKIHDLCQEHGIPV 282
|
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 354 |
| >gnl|CDD|239437 cd03321, mandelate_racemase, Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
IE+P Q D+E +A++ S + VQ+ G++ L P+ + KA+ C+ ++ + +IG
Sbjct: 217 IEEPTLQHDYEGHARIASALRTPVQM-GENWL--GPEEMFKALSAGACDLVMPDLMKIGG 273
Query: 360 VTESIEAVRMSKQAGWGVMASH 381
VT + A +++QAG M+SH
Sbjct: 274 VTGWLRASALAEQAGIP-MSSH 294
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 355 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 445 | |||
| PTZ00081 | 439 | enolase; Provisional | 100.0 | |
| KOG2670 | 433 | consensus Enolase [Carbohydrate transport and meta | 100.0 | |
| PLN00191 | 457 | enolase | 100.0 | |
| COG0148 | 423 | Eno Enolase [Carbohydrate transport and metabolism | 100.0 | |
| PRK00077 | 425 | eno enolase; Provisional | 100.0 | |
| cd03313 | 408 | enolase Enolase: Enolases are homodimeric enzymes | 100.0 | |
| TIGR01060 | 425 | eno phosphopyruvate hydratase. Alternate name: eno | 100.0 | |
| PTZ00378 | 518 | hypothetical protein; Provisional | 100.0 | |
| PRK08350 | 341 | hypothetical protein; Provisional | 100.0 | |
| PF00113 | 295 | Enolase_C: Enolase, C-terminal TIM barrel domain; | 100.0 | |
| PRK15072 | 404 | bifunctional D-altronate/D-mannonate dehydratase; | 100.0 | |
| cd03328 | 352 | MR_like_3 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| cd03327 | 341 | MR_like_2 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| TIGR01502 | 408 | B_methylAsp_ase methylaspartate ammonia-lyase. Thi | 100.0 | |
| cd03314 | 369 | MAL Methylaspartate ammonia lyase (3-methylasparta | 100.0 | |
| cd03321 | 355 | mandelate_racemase Mandelate racemase (MR) catalyz | 100.0 | |
| cd03322 | 361 | rpsA The starvation sensing protein RpsA from E.co | 100.0 | |
| PRK14017 | 382 | galactonate dehydratase; Provisional | 100.0 | |
| TIGR02534 | 368 | mucon_cyclo muconate and chloromuconate cycloisome | 100.0 | |
| cd03318 | 365 | MLE Muconate Lactonizing Enzyme (MLE), an homoocta | 100.0 | |
| cd03325 | 352 | D-galactonate_dehydratase D-galactonate dehydratas | 100.0 | |
| cd03326 | 385 | MR_like_1 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| PRK15440 | 394 | L-rhamnonate dehydratase; Provisional | 100.0 | |
| cd03324 | 415 | rTSbeta_L-fuconate_dehydratase Human rTS beta is e | 100.0 | |
| cd03329 | 368 | MR_like_4 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| TIGR01928 | 324 | menC_lowGC/arch o-succinylbenzoic acid (OSB) synth | 100.0 | |
| cd03317 | 354 | NAAAR N-acylamino acid racemase (NAAAR), an octame | 100.0 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 100.0 | |
| cd03323 | 395 | D-glucarate_dehydratase D-Glucarate dehydratase (G | 100.0 | |
| COG4948 | 372 | L-alanine-DL-glutamate epimerase and related enzym | 100.0 | |
| TIGR03247 | 441 | glucar-dehydr glucarate dehydratase. Glucarate deh | 100.0 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 100.0 | |
| PRK15129 | 321 | L-Ala-D/L-Glu epimerase; Provisional | 100.0 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 100.0 | |
| cd00308 | 229 | enolase_like Enolase-superfamily, characterized by | 100.0 | |
| cd03320 | 263 | OSBS o-Succinylbenzoate synthase (OSBS) catalyzes | 100.0 | |
| TIGR01927 | 307 | menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthe | 100.0 | |
| PRK02714 | 320 | O-succinylbenzoate synthase; Provisional | 100.0 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 100.0 | |
| PRK05105 | 322 | O-succinylbenzoate synthase; Provisional | 99.97 | |
| PF03952 | 132 | Enolase_N: Enolase, N-terminal domain; InterPro: I | 99.96 | |
| PRK02901 | 327 | O-succinylbenzoate synthase; Provisional | 99.85 | |
| COG3799 | 410 | Mal Methylaspartate ammonia-lyase [Amino acid tran | 99.77 | |
| PF07476 | 248 | MAAL_C: Methylaspartate ammonia-lyase C-terminus; | 99.74 | |
| PF02746 | 117 | MR_MLE_N: Mandelate racemase / muconate lactonizin | 99.72 | |
| PF01188 | 67 | MR_MLE: Mandelate racemase / muconate lactonizing | 99.37 | |
| PF13378 | 111 | MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FC | 99.13 | |
| COG1441 | 321 | MenC O-succinylbenzoate synthase [Coenzyme metabol | 98.88 | |
| PF05034 | 159 | MAAL_N: Methylaspartate ammonia-lyase N-terminus; | 98.26 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 98.08 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 97.8 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 97.36 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 97.27 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 96.33 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 92.25 | |
| COG0821 | 361 | gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat | 91.48 | |
| PRK00366 | 360 | ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s | 90.96 | |
| TIGR00612 | 346 | ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho | 90.37 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 90.32 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 87.81 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 87.58 | |
| PF04551 | 359 | GcpE: GcpE protein; InterPro: IPR004588 This prote | 87.4 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 86.94 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 86.25 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 86.2 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 85.83 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 85.82 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 84.82 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 84.18 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 84.04 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 83.99 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 82.85 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 82.18 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 81.82 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 81.7 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 80.83 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 80.64 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 80.14 |
| >PTZ00081 enolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-93 Score=723.81 Aligned_cols=433 Identities=73% Similarity=1.144 Sum_probs=407.0
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhhcC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAG 81 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~LiG 81 (445)
|+|++|++|+|+||+|+|||+|+|+|++|++ ++++|+|+|||.+|+.+++|+++. |.|+++..++..+++.|+|.|+|
T Consensus 2 ~~I~~v~~r~i~dSrg~ptvev~v~~~~G~~-~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~Av~~v~~~i~~~LiG 80 (439)
T PTZ00081 2 STIKSIKAREILDSRGNPTVEVDLTTEKGVF-RAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVENVNEIIAPALIG 80 (439)
T ss_pred cEEEEEEEEEEecCCCCceEEEEEEECCCCE-EEecccCCCCceeeEeeccCCCccccCCccHHHHHHHHHHHHHHHHcC
Confidence 6999999999999999999999999999977 999999999999999999998865 99999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH-hccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCC--CcceeeeeeEEe
Q 043137 82 KDPTEQTAIDNYMVQQ-LDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGN--KNLVLPVPAFNV 158 (445)
Q Consensus 82 ~d~~~~e~i~~~l~~~-l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~--~~~~vp~~~~~~ 158 (445)
+|+.+|+.||+.|. . +++++|-|+|+++.+|.||++|||||+|++.|+.+|+|||+|||++.|. .+..+|+|++++
T Consensus 81 ~d~~dq~~iD~~l~-~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~g~~~~~~~lP~P~~ni 159 (439)
T PTZ00081 81 KDVTDQKKLDKLMV-EQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLAGKPTDKFVLPVPCFNV 159 (439)
T ss_pred CChhhHHHHHHHHH-HhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCccCCccccceeEEe
Confidence 99999999999999 7 9999887899999999999999999999999999999999999544475 345799999999
Q ss_pred ecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHH
Q 043137 159 INGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIA 238 (445)
Q Consensus 159 ~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~ 238 (445)
++||.|+++.+++||||++|.++.++.++++++.++|+++|+.|+.|+|...+.++++|+|.|+++++++.|+.+++|++
T Consensus 160 inGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~~vgdeGgfap~~~~~eeal~ll~eAi~ 239 (439)
T PTZ00081 160 INGGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDATNVGDEGGFAPNIKDPEEALDLLVEAIK 239 (439)
T ss_pred ccCcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCcCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887778899999999999999999999999999
Q ss_pred HhCCCCCeEEEEeccccccccCCc-eeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHH
Q 043137 239 KAGYTGKVVIGMDVAASEFYGSDK-TYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTS 317 (445)
Q Consensus 239 ~~g~~~~i~l~vD~~a~~~~~~~~-~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~ 317 (445)
++||++++.|++|++++++|+..+ +|+++|++|.+++|+.+|++|++++|.+++++|++.||||||+++|+++|++|++
T Consensus 240 ~ag~~~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~I~~IEDPl~~~D~eg~~~Lt~ 319 (439)
T PTZ00081 240 KAGYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPIVSIEDPFDQDDWEAYAKLTA 319 (439)
T ss_pred HcCCcCceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHH
Confidence 999987899999999999996432 7998776655455667999999999999999999999999999999999999999
Q ss_pred HhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhh
Q 043137 318 EVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVG 397 (445)
Q Consensus 318 ~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a 397 (445)
++++++||+|||++++++++++++++.+++|+++||++|+||||++++++++|+++|+.++++|+++||++++++|||||
T Consensus 320 ~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~iishrsgETed~~iadLAVa 399 (439)
T PTZ00081 320 AIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMVSHRSGETEDTFIADLVVG 399 (439)
T ss_pred hhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEEEeCCCchhHHHHHHHHHHH
Confidence 99656999999987889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccccCCCCCchhHHHHHHHHHHHHHhCccccccccc
Q 043137 398 LATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAK 437 (445)
Q Consensus 398 ~~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~ 437 (445)
++++|+|.|+|+|+||++||||||||||+|++++.|.+.+
T Consensus 400 ~~~~~iK~G~~~r~er~aKyN~llriee~l~~~~~~~~~~ 439 (439)
T PTZ00081 400 LGTGQIKTGAPCRSERLAKYNQLLRIEEELGSNAVYAGEN 439 (439)
T ss_pred cCCCceecCCCcchHHHHHHHHHHHHHHHhccccccCCCC
Confidence 9999999999999999999999999999999998887753
|
|
| >KOG2670 consensus Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-92 Score=660.28 Aligned_cols=429 Identities=76% Similarity=1.167 Sum_probs=414.6
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhhcC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAG 81 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~LiG 81 (445)
|.|.+|++|+|+||+|+|||+|+++|+.|++ ++++|+|+|||.||+.+++|++.. |.|+++..++..|++.|+|.|++
T Consensus 1 m~~~kv~aR~I~dSRGnPTVEVdL~T~~G~f-RaavPSGAStGi~EAlELrDgdK~~y~GkgV~kaV~niN~~i~pali~ 79 (433)
T KOG2670|consen 1 MSIIKVKARQIYDSRGNPTVEVDLTTEKGVF-RAAVPSGASTGIYEALELRDGDKSKYMGKGVLKAVGNINNTIAPALIK 79 (433)
T ss_pred CCceeeehhhhhhcCCCCceeEEEEecCcce-EeecCCCCccchhhhhheecCCcceecchhHHHHHHHHHHHHHHHHHc
Confidence 4455699999999999999999999999965 899999999999999999999855 99999999999999999999999
Q ss_pred C--CCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCC-cceeeeeeEEe
Q 043137 82 K--DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNK-NLVLPVPAFNV 158 (445)
Q Consensus 82 ~--d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~-~~~vp~~~~~~ 158 (445)
+ |+.+|++||+.|. .++++.| .+.+|.+|+.+||+|++.+.|-..|+|||+++..+.|.. ...+|+|+|++
T Consensus 80 ~~~dv~~Q~~iD~~mi-~LDGTeN-----KsklGaNaIlgvSlavckagAa~k~vplykhia~lag~~~~~vlPVPaFNV 153 (433)
T KOG2670|consen 80 KNLDVTDQKAIDNFMI-ELDGTEN-----KSKLGANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQPYVLPVPAFNV 153 (433)
T ss_pred cCCChhhHHHHHHHHH-hccCCcc-----cccccchhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCCceEecccceee
Confidence 8 9999999999999 9999988 689999999999999999999999999999999888877 46799999999
Q ss_pred ecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHH
Q 043137 159 INGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIA 238 (445)
Q Consensus 159 ~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~ 238 (445)
++||.|+++++.+||+|++|.++.+++++++++.++|.++|..+|.|||.....||++|||.|++.+..+.|+++.+|++
T Consensus 154 lNGGsHAGn~lAmQEfMIlP~ga~sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E~L~Li~~Ai~ 233 (433)
T KOG2670|consen 154 LNGGSHAGNKLAMQEFMILPVGADSFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEALDLIKEAIN 233 (433)
T ss_pred ecCCccccchhhhhhheecccCchhHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHH
Q 043137 239 KAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSE 318 (445)
Q Consensus 239 ~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~ 318 (445)
.+||++++.|++|+++++||.++ +|+++|+.|+.++.+.+|.+++.++|.+++.+||+..|||||+.|||++|.++...
T Consensus 234 kagyt~kikIgmDvAaseF~~dg-kYDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPivSiEDPFdqdDw~~w~~~~~~ 312 (433)
T KOG2670|consen 234 KAGYTGKVKIGMDVAASEFYKDG-KYDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPIVSIEDPFDQDDWEAWSKFFKE 312 (433)
T ss_pred hcCCCCceEEEEeechhhhhcCC-cccccCcCCCCCcccccCHHHHHHHHHHHHhcCCeeeecCCcchhhHHHHHHHhhc
Confidence 99998899999999999999888 89999999999999999999999999999999999999999999999999999988
Q ss_pred hCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhh
Q 043137 319 VGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGL 398 (445)
Q Consensus 319 ~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~ 398 (445)
.. ++|+||++.+|++.++++.++.++|+.+.+|++|+|++||+++++.+|+++|+.+|++|+++||+|++++||.|++
T Consensus 313 ~~--iqiVgDDLtvTnpkri~~Ai~~k~cN~LLlKvNQIGtvtEsiea~~~a~~~gwgvmvSHRSGETeDtFIaDL~VGl 390 (433)
T KOG2670|consen 313 VG--IQIVGDDLTVTNPKRIATAIEEKACNALLLKVNQIGTVTESIEAAKLARSAGWGVMVSHRSGETEDTFIADLVVGL 390 (433)
T ss_pred cc--eEEecCcccccCHHHHHHHHHHhhccceEeeccccccHHHHHHHHHHHHhcCceEEEeccCCCcccchHHHhhhhh
Confidence 87 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCchhHHHHHHHHHHHHHhCccccccccccCCC
Q 043137 399 ATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFRAP 441 (445)
Q Consensus 399 ~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~~~~~ 441 (445)
++.++|.|.|||+||++|||+||||||||++.++|+|.+||+|
T Consensus 391 ~tgqIKtGApcRsERlaKYNqLLRIeEelg~~a~~aG~~f~~~ 433 (433)
T KOG2670|consen 391 GTGQIKTGAPCRSERLAKYNQLLRIEEELGDDARYAGENFRNP 433 (433)
T ss_pred ccceeecCCCchHHHHHHHHHHHHHHHHhcccceeccccccCC
Confidence 9999999999999999999999999999999999999999998
|
|
| >PLN00191 enolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-90 Score=706.30 Aligned_cols=431 Identities=84% Similarity=1.228 Sum_probs=406.1
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGK 82 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~ 82 (445)
|+|++|++|+|+||+|+|||+|+|+|++|.+ ++++|+|+|||.+|+.+++|+++.|.|+++..+++.|++.|+|.|+|+
T Consensus 26 ~~I~~v~~r~ildsrG~PtVeveV~~~~G~~-~a~~psgastG~~Ea~elrd~~~~~~g~gv~~Av~~v~~~ia~~LiG~ 104 (457)
T PLN00191 26 ATITKVKARQIIDSRGNPTVEVDLHTSKGMF-RAAVPSGASTGIYEALELRDGDKDYLGKGVLKAVKNVNEIIAPALIGM 104 (457)
T ss_pred CeeeEEEEEEEEcCCCCeEEEEEEEECCCCE-EEEeccCCCCCcceeeeccCCCcccCCccHHHHHHHHHHHHHHHHcCC
Confidence 4999999999999999999999999999976 999999999999999999998877999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCc
Q 043137 83 DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGG 162 (445)
Q Consensus 83 d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg 162 (445)
|+.||+.||+.|. .+++++| ++.+|.||+.|||||+|+++|+.+|+|||+||+.+.|..+.++|+|++++++||
T Consensus 105 ~~~dq~~iD~~l~-~ldgt~n-----k~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~gg~~~~~lP~p~~niinGG 178 (457)
T PLN00191 105 DPTDQTQIDNFML-ELDGTPN-----KGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAFNVINGG 178 (457)
T ss_pred ChhhHHHHHHHHH-HccCCCC-----ccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhhCCCCCccccceeEEeecCc
Confidence 9999999999999 8999887 689999999999999999999999999999994333866778999999999999
Q ss_pred ccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCC
Q 043137 163 SHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGY 242 (445)
Q Consensus 163 ~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~ 242 (445)
.|+++.+++||||++|.++.+++++++++.++|+++|+.|+.|+|...+.++|+|+|.|+++++++.|+.+++|++++||
T Consensus 179 ~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~~vgdeGg~ap~~~~~~eal~ll~eAi~~ag~ 258 (457)
T PLN00191 179 SHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDACNVGDEGGFAPNIQDNKEGLELLKEAIEKAGY 258 (457)
T ss_pred cccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcCccCCCCCcCCCCCCHHHHHHHHHHHHHHcCC
Confidence 99988999999999999999999999999999999999999999887788999999999999999999999999999999
Q ss_pred CCCeEEEEecccccccc-CCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCC
Q 043137 243 TGKVVIGMDVAASEFYG-SDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGE 321 (445)
Q Consensus 243 ~~~i~l~vD~~a~~~~~-~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~ 321 (445)
++++.|++|+|++++|+ ++ +|+++|+++.++.+..+|++++++++.+++++|++.||||||+++|+++|++|+++..
T Consensus 259 ~~~i~i~lD~Aase~~~~~~-~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I~~IEDPl~~~D~eg~~~Lt~~~~- 336 (457)
T PLN00191 259 TGKIKIGMDVAASEFYTKDK-KYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIEDPFDQDDWEHWAKLTSLED- 336 (457)
T ss_pred CCceEEEeehhhhhhcccCC-ceEeeccccCCCcccccCHHHHHHHHHHHhhcCCcEEEECCCCcccHHHHHHHHccCC-
Confidence 77899999999999997 55 7988765544444456899999999999999999999999999999999999999976
Q ss_pred CceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCC
Q 043137 322 KVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATG 401 (445)
Q Consensus 322 ~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~ 401 (445)
+||+|||++++++++++++++.+++|+++||++|+||||++++++++|+++|+.++++|+++||++++++|||+|+.++
T Consensus 337 -ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~ishrsgET~d~~~Adlava~~~~ 415 (457)
T PLN00191 337 -VQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRSGETEDSFIADLAVGLATG 415 (457)
T ss_pred -CcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeCCCCccchHHHHHHHHHHhCCC
Confidence 9999999977899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhCccccccccccCCCCC
Q 043137 402 QIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFRAPVE 443 (445)
Q Consensus 402 ~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~~~~~~~ 443 (445)
+++.|.|+|+||++||||||||||+|++.+.|.+..|+.++|
T Consensus 416 ~ik~G~~~r~er~aKyN~llriee~l~~~~~~~~~~~~~~~~ 457 (457)
T PLN00191 416 QIKTGAPCRSERLAKYNQLLRIEEELGDEAVYAGENFRKPVW 457 (457)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHhcccceecccccccCCC
Confidence 999999999999999999999999999999999999999876
|
|
| >COG0148 Eno Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-90 Score=663.29 Aligned_cols=417 Identities=60% Similarity=0.937 Sum_probs=400.8
Q ss_pred CceEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhc
Q 043137 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALA 80 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~Li 80 (445)
|+ +|++|.+|+|+||+|+|||+|+|+|++|..|++++|+|+|||.+|+.++||++..|.|+++..+++.+++.|+|.|+
T Consensus 1 m~-~I~~i~aReIlDSRGnpTVEveV~~~~g~~g~a~vPSGAStG~~EavElrdgd~ry~gkGV~~AV~nVn~~Iap~Li 79 (423)
T COG0148 1 MS-AIEDVIAREILDSRGNPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGDSRYLGKGVLKAVANVNEIIAPALI 79 (423)
T ss_pred Cc-ccceeEEEEEEcCCCCceEEEEEEEcCCCcceeecCCCCCCCCceeEEecCCccccccccHHHHHHHHHHHHHHHHc
Confidence 55 89999999999999999999999999999999999999999999999999999789999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeec
Q 043137 81 GKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVIN 160 (445)
Q Consensus 81 G~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~ 160 (445)
|.|+.||..||+.|. .+++++| ++.+|.||+.|||||+..++|..+++|||++|| |.....+|+|++++++
T Consensus 80 G~da~dQ~~ID~~li-elDGT~N-----ks~lGaNailgVSlAvAkAAA~~l~~PLy~YlG---G~~a~~lPvPm~Nvin 150 (423)
T COG0148 80 GLDATDQALIDSLLI-ELDGTEN-----KSKLGANAILGVSLAVAKAAAASLGIPLYRYLG---GLNALVLPVPMMNVIN 150 (423)
T ss_pred CCCcccHHHHHHHHH-HccCCCc-----ccccccHHHHHHHHHHHHHHHHhcCCcHHHHhc---Cccccccccceeeeec
Confidence 999999999999999 9999999 799999999999999999999999999999999 8766789999999999
Q ss_pred CcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHh
Q 043137 161 GGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240 (445)
Q Consensus 161 gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~ 240 (445)
||.|+.+.+++||||++|.++.++.|+++++.++|+++|+.|+.| |.... +||+|+|.|++...++.|+.+.+|++++
T Consensus 151 GG~HA~n~~d~QEFmI~p~ga~sf~ealr~~~ev~h~lk~~l~~~-g~~t~-vGDEGgfAP~l~~~eeald~i~~Aie~a 228 (423)
T COG0148 151 GGAHADNNLDIQEFMIMPVGAESFKEALRAGAEVFHHLKKLLKEK-GLSTG-VGDEGGFAPNLKSNEEALDILVEAIEEA 228 (423)
T ss_pred ccccCCCCccceeEEEeecChHHHHHHHHHHHHHHHHHHHHHhhc-Ccccc-ccCCcccCCCCCccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988 76544 9999999999999999999999999999
Q ss_pred CCCC--CeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHH
Q 043137 241 GYTG--KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSE 318 (445)
Q Consensus 241 g~~~--~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~ 318 (445)
|+++ ++.|++||+++++|+++ +|.++ +..+|++|++++|.+++++|||..|||||..+||++|++|.+.
T Consensus 229 gy~~g~~i~~alD~Aasefy~~~-~Y~~~--------~~~~~~~e~i~~~~~Lv~~YpivsiEDpl~E~Dweg~~~lt~~ 299 (423)
T COG0148 229 GYEPGEDIALALDVAASEFYKDG-KYVLE--------GESLTSEELIEYYLELVKKYPIVSIEDPLSEDDWEGFAELTKR 299 (423)
T ss_pred CCCCCcceeeeehhhhhhhccCC-eeeec--------CcccCHHHHHHHHHHHHHhCCEEEEcCCCCchhHHHHHHHHHh
Confidence 9983 69999999999999988 58875 3578999999999999999999999999999999999999999
Q ss_pred hCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhh
Q 043137 319 VGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGL 398 (445)
Q Consensus 319 ~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~ 398 (445)
++.++.|+||++++||++.+++.++.+++|.+.||++|+|++||+++.+.+|+.+|+.++++|+++||+|++++|||||+
T Consensus 300 ~g~kvqivGDDLfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETeD~tIAdLAVa~ 379 (423)
T COG0148 300 LGDKVQIVGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAGYTAVISHRSGETEDTTIADLAVAT 379 (423)
T ss_pred hCCeEEEECCcceecCHHHHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCCCeEEEecCCCCcccchHHHHHHHh
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCchhHHHHHHHHHHHHHhCcccccccccc
Q 043137 399 ATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKF 438 (445)
Q Consensus 399 ~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~~ 438 (445)
+++|+|.|.|+|+||++|||||||||++|++.+.|.+..+
T Consensus 380 ~agqIKTGs~sRseRiaKyNqLlrIEeeLg~~a~y~g~~~ 419 (423)
T COG0148 380 NAGQIKTGSLSRSERVAKYNELLRIEEELGDKARYAGIKE 419 (423)
T ss_pred CCCeeecCCCcchhHHHHHHHHHHHHHHhhhccccCChHh
Confidence 9999999999999999999999999999999999988763
|
|
| >PRK00077 eno enolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-88 Score=693.62 Aligned_cols=418 Identities=58% Similarity=0.915 Sum_probs=392.5
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhhcC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAG 81 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~LiG 81 (445)
|+|++|++|+|+||+|+|||+|+|+|++|++|++++|+|+|||.+|+.+++|+++. |.|+++..+++.|++.|+|.|+|
T Consensus 2 ~~I~~v~~r~i~dsrg~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~v~~~iap~LiG 81 (425)
T PRK00077 2 SKIEDIIAREILDSRGNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVLKAVENVNEEIAPALIG 81 (425)
T ss_pred CeEEEEEEEEEEcCCCCeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHHHHHHHHHHHHHHHHcC
Confidence 59999999999999999999999999999999999999999999999999998765 99999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecC
Q 043137 82 KDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVING 161 (445)
Q Consensus 82 ~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~g 161 (445)
+||.+|++||+.|. .++++.+ ++.+|.+|++|||||+||+.||.+|+|||+||| |..++++|+|+|++++|
T Consensus 82 ~d~~d~~~id~~l~-~ldgt~~-----~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLG---G~~~~~~pvp~~n~i~G 152 (425)
T PRK00077 82 LDALDQRAIDKAMI-ELDGTPN-----KSKLGANAILGVSLAVAKAAADSLGLPLYRYLG---GPNAKVLPVPMMNIING 152 (425)
T ss_pred CChhhHHHHHHHHH-HhhCccc-----cCccchHHHHHHHHHHHHHHHHHhCCcHHHHhC---CCCcccccceeEEEEcc
Confidence 99999999999999 7887766 456778999999999999999999999999999 87667899999999999
Q ss_pred cccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhC
Q 043137 162 GSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAG 241 (445)
Q Consensus 162 g~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g 241 (445)
|.|+.+++++||+|++|.+..+++++++++.++|+++|..++.| |. ..+++++|+|.|++++++++|+++++|++++|
T Consensus 153 G~ha~~~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~-g~-~~~vGdeGg~~p~~~~~~e~l~~lreAi~~ag 230 (425)
T PRK00077 153 GAHADNNVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEK-GL-STAVGDEGGFAPNLKSNEEALDLILEAIEKAG 230 (425)
T ss_pred cccccCchhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhc-CC-CCcCCCcCCcCCCccchHHHHHHHHHHHHHhc
Confidence 99988888999999999999999999999999999999988877 64 46799999999999999999999999999999
Q ss_pred CC-C-CeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHh
Q 043137 242 YT-G-KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEV 319 (445)
Q Consensus 242 ~~-~-~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~ 319 (445)
|+ + ++.|++|+|++++|+++ +|+++ ++.||++++++++.+++++|++.||||||+++|+++|++|++++
T Consensus 231 ~~~G~di~l~lD~aas~~~~~~-~y~~~--------~~~~s~~e~~~~~~~l~e~y~i~~iEdPl~~~D~~g~~~L~~~~ 301 (425)
T PRK00077 231 YKPGEDIALALDCAASEFYKDG-KYVLE--------GEGLTSEEMIDYLAELVDKYPIVSIEDGLDENDWEGWKLLTEKL 301 (425)
T ss_pred CCCCCceEEEEehhhhhcccCC-eeecc--------CCcCCHHHHHHHHHHHHhhCCcEEEEcCCCCccHHHHHHHHHhc
Confidence 98 4 79999999999999766 78874 46799999999999999999999999999999999999999999
Q ss_pred CCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhc
Q 043137 320 GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLA 399 (445)
Q Consensus 320 ~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~ 399 (445)
+.++||++||++++++++++++++.+++|+++||++++||||++++++++|+++|+.++++|+++||++++++|||||++
T Consensus 302 ~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt~d~~~a~lava~~ 381 (425)
T PRK00077 302 GDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVATN 381 (425)
T ss_pred CCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcchHHHHHHHHHHhC
Confidence 55699999998778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCchhHHHHHHHHHHHHHhCccccccc-cccCC
Q 043137 400 TGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAG-AKFRA 440 (445)
Q Consensus 400 ~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~-~~~~~ 440 (445)
++|+|.|+|+++||++||||||||||+|+++++|.+ ..|+.
T Consensus 382 ~~~ik~G~~~~~er~~k~n~ll~i~~~l~~~~~~~~~~~~~~ 423 (425)
T PRK00077 382 AGQIKTGSLSRSERIAKYNQLLRIEEELGDAARYAGKKAFKN 423 (425)
T ss_pred CccccCCCCcchHHHHHHHHHHHHHHHhcccceecchhhccc
Confidence 999999999999999999999999999999999988 57764
|
|
| >cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-86 Score=675.34 Aligned_cols=405 Identities=66% Similarity=1.019 Sum_probs=380.3
Q ss_pred EEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhhcCCCCC
Q 043137 7 AVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKDPT 85 (445)
Q Consensus 7 ~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~LiG~d~~ 85 (445)
+|++|+|+||+|+|||+|+|+|++|.+|+|++|+|+|+|.+|+.+++|+++. |+|+++..++..|++.|+|.|+|+||.
T Consensus 1 ~v~~r~i~dsrg~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~ 80 (408)
T cd03313 1 KIKAREILDSRGNPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALIGMDVT 80 (408)
T ss_pred CeEEEEEecCCCCceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHcCCChh
Confidence 4789999999999999999999999999999999999999999999998775 999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccC
Q 043137 86 EQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHA 165 (445)
Q Consensus 86 ~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~ 165 (445)
+|+.||+.|. .++++.+ .+.+|.+|++|||||+||+.||.+|+|||+||| |..+.++|+|++++++||.|+
T Consensus 81 dq~~id~~l~-~~dgt~~-----~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lg---g~~~~~lpvp~~nvi~GG~ha 151 (408)
T cd03313 81 DQRAIDKLLI-ELDGTPN-----KSKLGANAILGVSLAVAKAAAAALGLPLYRYLG---GLAAYVLPVPMFNVINGGAHA 151 (408)
T ss_pred hHHHHHHHHH-HhcCCCc-----ccccchHHHHHHHHHHHHHHHHHcCCcHHHHhc---CCCCcccceeeEEEecCcccc
Confidence 9999999999 7888776 578889999999999999999999999999999 877778999999999999999
Q ss_pred CCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCC-
Q 043137 166 GNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTG- 244 (445)
Q Consensus 166 ~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~- 244 (445)
.+++++||||++|.++.+++++++++.++|+++|+.|+.|.|....+++++|+|.|+++.++++|+++++|++++||++
T Consensus 152 ~~~~~iqe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G 231 (408)
T cd03313 152 GNKLDFQEFMIVPVGAPSFSEALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPG 231 (408)
T ss_pred cCccccccccccccCccCHHHHHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCC
Confidence 8899999999999999999999999999999999888888766678999999999999999999999999999999873
Q ss_pred -CeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCc
Q 043137 245 -KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKV 323 (445)
Q Consensus 245 -~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~v 323 (445)
|+.|++|+|++++|+++ +|.+.+. .|+.||++++++++.+++++|++.|||||++++|+++|++|+++++.++
T Consensus 232 ~dv~i~lD~aas~~~~~~-~y~~~~~-----~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~D~eg~~~L~~~~g~~i 305 (408)
T cd03313 232 KKIAIALDVAASEFYDEG-KYVYDSD-----EGKKLTSEELIDYYKELVKKYPIVSIEDPFDEDDWEGWAKLTAKLGDKI 305 (408)
T ss_pred CeEEEEEehhhhhhcccC-cceeccC-----CCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCcCHHHHHHHHHhcCCCC
Confidence 89999999999999877 5665311 2578999999999999888999999999999999999999999984459
Q ss_pred eEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCcc
Q 043137 324 QIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQI 403 (445)
Q Consensus 324 pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~ 403 (445)
||+|||++++++++++++++.+++|+++||++|+||||++++++++|+++|+.++++|+++||++++++|||+|++++|+
T Consensus 306 pi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~adlava~~~~~i 385 (408)
T cd03313 306 QIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAGQI 385 (408)
T ss_pred eEEcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHHHHHHHHhCcCcc
Confidence 99999987788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHH
Q 043137 404 KTGAPCRSERLAKYNQLLRIEEE 426 (445)
Q Consensus 404 ~~G~~~~~e~~~k~n~ll~i~~~ 426 (445)
|.|+|+|+||++||||||||||+
T Consensus 386 k~G~~~r~er~~k~n~ll~i~~~ 408 (408)
T cd03313 386 KTGAPCRSERTAKYNQLLRIEEE 408 (408)
T ss_pred ccCCCcchHHHHHHHHHHHHhhC
Confidence 99999999999999999999985
|
The reaction is facilitated by the presence of metal ions. |
| >TIGR01060 eno phosphopyruvate hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-85 Score=672.02 Aligned_cols=417 Identities=58% Similarity=0.922 Sum_probs=385.6
Q ss_pred EEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhhcCCC
Q 043137 5 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKD 83 (445)
Q Consensus 5 I~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~LiG~d 83 (445)
|++|++|+|+||+|+|||+|+|+|++|.+|++++|+|+|||.+|+.+++|+++. |.|+++..++..+++.|+|.|+|+|
T Consensus 1 i~~i~~r~i~dsrg~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d 80 (425)
T TIGR01060 1 IKDIRAREILDSRGNPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALIGMD 80 (425)
T ss_pred CcEEEEEEEecCCCCceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHcCCC
Confidence 789999999999999999999999999999999999999999999999998765 9999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcc
Q 043137 84 PTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGS 163 (445)
Q Consensus 84 ~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~ 163 (445)
|.||++||+.|. .++++.+ .+.+|.+|++||||||||+.||.+|+|||+||| |..++++|+|++++++||.
T Consensus 81 ~~d~~~id~~l~-~~d~t~~-----~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLG---G~~~~~lPvp~~n~i~GG~ 151 (425)
T TIGR01060 81 AFDQREIDQIMI-ELDGTPN-----KSKLGANAILGVSMAVAKAAAKSLGLPLYRYLG---GKNAYVLPVPMMNIINGGA 151 (425)
T ss_pred HHHHHHHHHHHH-hcCCcCC-----cchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhC---CCCCCceeeEEEEeecccc
Confidence 999999999998 6777655 355778999999999999999999999999999 8777889999999999999
Q ss_pred cCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCC
Q 043137 164 HAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYT 243 (445)
Q Consensus 164 ~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~ 243 (445)
|+.++++++|+|++|.++.+++++++++.++|+++|..++.| |. ...++++|+|.|+++.+++.|+.++++++++|++
T Consensus 152 ~a~~~~~~qe~~i~p~~a~~~~e~~~~~~~g~~~lK~~l~~~-~~-~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~ 229 (425)
T TIGR01060 152 HADNNLDFQEFMIMPVGAKSFREALRMGAEVFHALKKLLKEK-GL-ATGVGDEGGFAPNLASNEEALEIISEAIEKAGYK 229 (425)
T ss_pred cccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhc-CC-CCCCCcccccCCCccccHHHHHHHHHHHHHHhhc
Confidence 987788899999999999999999999999999999878776 54 4668999999999888999999999999998876
Q ss_pred -C-CeEEEEecccccccc--CCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHh
Q 043137 244 -G-KVVIGMDVAASEFYG--SDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEV 319 (445)
Q Consensus 244 -~-~i~l~vD~~a~~~~~--~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~ 319 (445)
+ ++.|++|+|++++|+ ++ +|++.. .+..+|++++++++.+++++|++.||||||+++|+++|++|++++
T Consensus 230 ~G~di~l~lD~aas~~~~~~~~-~y~~~~------~~~~~s~~eai~~~~~lle~~~i~~iEdPl~~~D~~~~~~L~~~~ 302 (425)
T TIGR01060 230 PGEDVALALDCAASEFYDEEDG-KYVYKG------ENKQLTSEEMIEYYKELVEKYPIVSIEDGLSEEDWEGWAELTKEL 302 (425)
T ss_pred cCCceEEEEEccccccccccCc-eeeecC------cccccCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhc
Confidence 3 799999999999997 34 788741 234589999999988788999999999999999999999999999
Q ss_pred CCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhc
Q 043137 320 GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLA 399 (445)
Q Consensus 320 ~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~ 399 (445)
+.++||++||++++++++++++++.+++|+++||++|+||||++++++++|+++|+.++++|+++||++++++|||||++
T Consensus 303 ~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~lava~~ 382 (425)
T TIGR01060 303 GDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADLAVALN 382 (425)
T ss_pred CCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHHHHHhC
Confidence 54599999998778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCchhHHHHHHHHHHHHHhCccccccc-cccC
Q 043137 400 TGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAG-AKFR 439 (445)
Q Consensus 400 ~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~-~~~~ 439 (445)
++++|.|+|+++||++||||||||||+|++.+.|.+ ..|+
T Consensus 383 ~~~ik~g~~~~~er~~kyn~ll~i~~~l~~~~~~~~~~~~~ 423 (425)
T TIGR01060 383 AGQIKTGSLSRSERIAKYNQLLRIEEELGDSARYAGKNTFY 423 (425)
T ss_pred cCccccCCCchHHHHHHHHHHHHHHHHhcccceecchhccC
Confidence 999999999999999999999999999999999988 5776
|
Alternate name: enolase |
| >PTZ00378 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-76 Score=594.24 Aligned_cols=412 Identities=21% Similarity=0.337 Sum_probs=371.5
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC--C-CCccHHHHHHHHHHhHhhhh
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD--Y-LGKGVSKAVSNVNAIIGPAL 79 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~--y-~~~~~~~a~~~i~~~l~p~L 79 (445)
++|++|++|+|+||+|+|||+|+|+|++|.+ +|+|+||| |+.++||+++. | .|+++..++. +.|+|.|
T Consensus 49 ~~I~~i~areIlDSrGnPTVev~v~l~~G~~----vPSGAStG--EA~elRDgd~~~~~g~gkgV~~Av~---~~i~p~L 119 (518)
T PTZ00378 49 DEIRALVHNEVLSPAGETVLRFTLELLNGME----VSSGALLS--PSHGERDGEADATLDPAEYTTEALQ---NSYFPRL 119 (518)
T ss_pred CeeeEEEEEEEEcCCCCeeEEEEEEECCCCE----ECCCCccc--ceeeeecCCcccccCCCccHHHHHH---hhhHHHH
Confidence 6899999999999999999999999999964 89999999 99999998864 6 6778888765 6799999
Q ss_pred cCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCC----Ccceeeeee
Q 043137 80 AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGN----KNLVLPVPA 155 (445)
Q Consensus 80 iG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~----~~~~vp~~~ 155 (445)
+|+++.||++||+.|. .+++++| .+.+|.||+.|||||++.++|+..++|||+|||.++|. ....+|+|+
T Consensus 120 ig~~~~dQ~~iD~~Li-~lDGT~n-----ks~lGaNailavS~A~akAAA~~~~~PLy~yL~~~~~~~~~~~~~~lP~P~ 193 (518)
T PTZ00378 120 LQLGARDQREFDSTLR-AALSTSP-----LANVGSAVQWALSIVASLAAARCRSVPLFQYLRALFGSLTSVETFSMPQLC 193 (518)
T ss_pred cCCChHhHHHHHHHHH-HhcCCCc-----ccchhhHHHHHHHHHHHHHHHHHcCCCHHHHhhccccccccCCCcccCccc
Confidence 9999999999999999 8999998 68999999999999999999999999999999944332 245799999
Q ss_pred EEeecCcccCCCCcccceeeeccCCh--hcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCC-CCCccChHHHHHH
Q 043137 156 FNVINGGSHAGNKLAMQEFMILPVGA--SCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGF-APNIQENKEGLEL 232 (445)
Q Consensus 156 ~~~~~gg~~~~~~~~~~e~~~~p~~~--~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~-~~~~~~~~~~l~~ 232 (445)
+++++||.|+++++++||||++|.++ .++.|+++++.++|+++++ | ..+.+|++||| .|++++.++.|++
T Consensus 194 ~NiinGG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh~L~~------~-~~t~vGDEGGfaap~~~~~eeAL~l 266 (518)
T PTZ00378 194 ITFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHHFCQ------S-HNSSVRSDGSLHWDGFANLTDAVKL 266 (518)
T ss_pred eEeecCccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHHHHhh------c-ccCccCCCcCcCCCCCCCHHHHHHH
Confidence 99999999999999999999999977 8999999999999999842 3 24789999999 6778889999999
Q ss_pred HHHHHHHhCCC-C-CeEEEEecccccc------------ccCCc-----eeeecccCCCCCCCCccCHHHHHHHHHHhhc
Q 043137 233 LNTAIAKAGYT-G-KVVIGMDVAASEF------------YGSDK-----TYDLNFKEENNDGSQKISGDALKDLYKSFIS 293 (445)
Q Consensus 233 l~~av~~~g~~-~-~i~l~vD~~a~~~------------~~~~~-----~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~ 293 (445)
+.+|++++||+ + +|.|++|++|+++ |+++| .|.+. + ....+|.+|+++||.++++
T Consensus 267 i~eAi~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~-~-----~~~~~t~~elieyy~~li~ 340 (518)
T PTZ00378 267 ATEALRAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLF-P-----GEPDVTGDQLSEYVREQLQ 340 (518)
T ss_pred HHHHHHHhCCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeec-C-----CCCCCCHHHHHHHHHHHHH
Confidence 99999999998 4 6999999999999 97631 47763 2 1233799999999999999
Q ss_pred cCC--eeeEECCCCcCCHHHHHHHHHHhCCCceEEeCccccc-CHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHH
Q 043137 294 DYP--IVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVT-NPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMS 370 (445)
Q Consensus 294 ~~~--i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~-~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A 370 (445)
+|| |.+|||||..+|+++|++|++++++++.|+||++++| ++..+++.++.++++.+.||++|+|+||++++++++|
T Consensus 341 kYP~iIvsIEDp~~E~D~~gw~~lt~~lG~~iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQIGTlSEtieav~lA 420 (518)
T PTZ00378 341 AVPDIVVYVEDTHCDEDTFGLQRLQAALGDSIVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCAIGTLSDVVEIVRAV 420 (518)
T ss_pred HCCCceEEEecCCCchHHHHHHHHHHHhCCeEEEECCCcCcCCCHHHHHHHHhcCCCceEEEccccceeHHHHHHHHHHH
Confidence 999 9999999999999999999999988899999999999 7999999999999999999999999999999999999
Q ss_pred HHcCCcEE---ecCCCCCChhhHHHHHHhhhcCCccccCCCCCchhHHHHHHHHHHHHHhCccccccc--cccCCCCCC
Q 043137 371 KQAGWGVM---ASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAG--AKFRAPVEP 444 (445)
Q Consensus 371 ~~~g~~~~---~~~~~~et~~~~~~~la~a~~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~--~~~~~~~~~ 444 (445)
+++|..+| ++|++| ++++++|||||++++|+|.|+|+|+||++||||||||||||+++..... ++|+.-.||
T Consensus 421 ~~~g~~~v~v~vShRSG--eD~~IAdLAVa~ga~~IKtGa~~r~ER~aKyNqLlrIeeeLg~~~~l~~~~~~~~~~~~~ 497 (518)
T PTZ00378 421 GEDEGRAVTVLVQTLAG--NAATAAHLAVAMGARFLCSGGLFSAHQCEVVSQLASRQDELTHSRMLAPEAPKFNRMDLP 497 (518)
T ss_pred HHcCCcEEccccCCCcC--CccHHHHHHHHcCCCccccCCCccchHHHHHHHHHHHHHHhCcCCccCCCCCCCccccCC
Confidence 99999998 999988 6999999999999999999999999999999999999999987775544 345444444
|
|
| >PRK08350 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-67 Score=504.42 Aligned_cols=329 Identities=31% Similarity=0.467 Sum_probs=300.5
Q ss_pred EEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCC-CCCCccHHHHHHHHHHhHhhhhcCC
Q 043137 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGS-DYLGKGVSKAVSNVNAIIGPALAGK 82 (445)
Q Consensus 4 kI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~-~y~~~~~~~a~~~i~~~l~p~LiG~ 82 (445)
+|++|++|+|+||+|+|||+|+|+|++| +|++++|+.. ++ .|. .++..+++.+++.|+|.|+|+
T Consensus 3 ~I~~i~aReIlDSRGnPTVEveV~~~~g-~gra~vPSD~-------------d~~ry~-~gV~~AV~nVn~~Iap~LiG~ 67 (341)
T PRK08350 3 VIENIIGRVAVLRGGKYSVEVDVITDSG-FGRFAAPIDE-------------NPSLYI-AEAHRAVSEVDEIIGPELIGF 67 (341)
T ss_pred eeEEEEEEEEEcCCCCceEEEEEEECCc-EEEEEecCCC-------------Cccccc-chHHHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999999 8999999831 22 266 789999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCc
Q 043137 83 DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGG 162 (445)
Q Consensus 83 d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg 162 (445)
|+.+|+.||+.|. .+++++| .+.+|.||+.|||||++.++|+.+|+|||+||| |.....+|+|++++++||
T Consensus 68 d~~dQ~~ID~~mi-elDGT~n-----Ks~lGaNAiLavS~A~akAaA~~~~~PLy~ylg---g~~~~~lPvP~~NiiNGG 138 (341)
T PRK08350 68 DASEQELIDSYLW-EIDGTED-----FSHIGANTALAVSVAVAKAAANSKNMPLYSYIG---GTFTTELPVPILEFAEDE 138 (341)
T ss_pred CHHHHHHHHHHHH-hccCCcc-----ccccCchhhHHHHHHHHHHHHHHcCCcHHHHhc---CCCCCccCccceeeecCC
Confidence 9999999999999 8999998 689999999999999999999999999999999 755567999999999997
Q ss_pred ccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCC
Q 043137 163 SHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGY 242 (445)
Q Consensus 163 ~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~ 242 (445)
++ |||++| .++++ +.++|+++|..||. +.++.|+.+.+|++++||
T Consensus 139 -------~~-EFmI~p------~ea~~-~~ev~~~lk~il~~--------------------~~eeaL~ll~eAi~~aGy 183 (341)
T PRK08350 139 -------NF-EYYVLV------RDLME-ITDVVDAVNKILEN--------------------SKEVSLEGLSKASEKAGD 183 (341)
T ss_pred -------ce-EEEECc------hHhhh-hHHHHHHHHHHHhh--------------------ChHHHHHHHHHHHHHhCC
Confidence 35 999998 68888 78999999988763 248899999999999999
Q ss_pred C-C-CeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhC
Q 043137 243 T-G-KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVG 320 (445)
Q Consensus 243 ~-~-~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~ 320 (445)
+ + |+.+.+|+. ..+|++|++ +++++|||.+|| ||..+ ++|++|+++ .
T Consensus 184 ~~g~dv~~~lD~~-----------------------~~~t~~eli----~l~~kYPIvsIE-p~~E~--~gw~~lt~~-g 232 (341)
T PRK08350 184 ELGLEVALGIAQK-----------------------REMETEKVL----NLVEDNNIAYIK-PIGDE--ELFLELIAG-T 232 (341)
T ss_pred CccccEEEeeccC-----------------------CCCCHHHHH----HHHHHCCEEEEE-cCCcc--hHHHHHHhc-C
Confidence 8 4 699999992 125778876 688999999999 99954 999999999 6
Q ss_pred CCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcC
Q 043137 321 EKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLAT 400 (445)
Q Consensus 321 ~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~ 400 (445)
+++.|+||++++|++.. +.++|+.+.||++|+|++||+++.+++|+++|+.+|++|++|||+|++++|||||+++
T Consensus 233 ~~iqiVGDDLfvTN~~~-----~~~~~NaiLiK~NQIGTltEt~~ai~~A~~~g~~~vvSHRSGETeD~~IAdLaVa~~a 307 (341)
T PRK08350 233 HGVFIDGEYLFRTRNIL-----DRRYYNALSIKPINLGTLTDLYNLVNDVKSERITPILAEAKYESADEALPHLAVGLRC 307 (341)
T ss_pred CceEEEcccccccChhH-----hhCccceEEEeeccceeHHHHHHHHHHHHHcCCeEEeecCCCCCcchhHHHHHHHhCC
Confidence 78999999999999654 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCchhHHHHHHHHHHHHHhCccc
Q 043137 401 GQIKTGAPCRSERLAKYNQLLRIEEELGAEA 431 (445)
Q Consensus 401 ~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~ 431 (445)
+|+| +|+||++||||||||||+|++++
T Consensus 308 gqIK----~R~ER~aKyN~LlrIee~lg~~~ 334 (341)
T PRK08350 308 PAML----IHKDSVEKINELNRIAEDLGERG 334 (341)
T ss_pred Cccc----cchhHHHHHHHHHHHHHHcCCCe
Confidence 9998 79999999999999999998665
|
|
| >PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-65 Score=490.21 Aligned_cols=293 Identities=68% Similarity=1.107 Sum_probs=256.5
Q ss_pred ceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHH
Q 043137 149 LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKE 228 (445)
Q Consensus 149 ~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~ 228 (445)
..+|+|++++++||.|+++++++||||++|.++.+++++++++.++|+++|+.++.|+|...+.+|++|+|.|++++.++
T Consensus 2 ~~lPvP~~nvinGG~ha~~~l~~QEfmI~P~ga~s~~eal~~~~eVy~~Lk~il~~k~G~~~t~vgDeGGfaP~~~~~ee 81 (295)
T PF00113_consen 2 YTLPVPMFNVINGGKHAGNKLDFQEFMIVPVGADSFSEALRMGAEVYHALKKILKKKGGKFATNVGDEGGFAPNIDDNEE 81 (295)
T ss_dssp EEE-EEEEEEEE-GGGSSSSCSSSEEEEEETT-SSHHHHHHHHHHHHHHHHHHHHHHH-GGGGSBETTSSB--SBSSHHH
T ss_pred cccCcceEEEEcCccCCCCcccceEEEEEeccCCCHHHHHHhhhHHHHHHHHHHhhcccccccccCcccccCCCCcchhH
Confidence 36899999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEeccccccccCCc-eeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcC
Q 043137 229 GLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDK-TYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQD 307 (445)
Q Consensus 229 ~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~-~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~ 307 (445)
.|+++.+|++++||++++.|++|++|+++|+..+ +|++++..+..++.+.+|++|++++|.+++++|||.+|||||+.+
T Consensus 82 aL~ll~~Ai~~aGy~~~v~ialD~AAsefyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li~~YPIvsIEDpf~ed 161 (295)
T PF00113_consen 82 ALDLLMEAIKEAGYEPDVAIALDVAASEFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLIKKYPIVSIEDPFDED 161 (295)
T ss_dssp HHHHHHHHHHHTT-TTTBEEEEE--GGGGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHHHHS-EEEEESSS-TT
T ss_pred HHHHHHHHHHHccccceeeeeccccHHHhhhccCCeEEEeecccccccccccCHHHHHHHHHHHHHhcCeEEEEcccccc
Confidence 9999999999999988999999999999996444 899987655555566799999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCCh
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETE 387 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~ 387 (445)
|+++|++|++++++++.|+||++++|+++++++.++.++++.+.||++|+|++|++++++++|+++|+.+|++|+++||+
T Consensus 162 D~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvte~lea~~~a~~~g~~~vvS~rsgEte 241 (295)
T PF00113_consen 162 DWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVTETLEAVKLAKSAGWGVVVSHRSGETE 241 (295)
T ss_dssp -HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHHHHHHHHHHHHHTT-EEEEE--SS--S
T ss_pred chHHHHHHHHhhhcceeeecccccccchhhhhccchhhhccchhhhhhhhHHHHHHHHHHHHHHHCCceeeccCCCCCcC
Confidence 99999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCccccCCCCCchhHHHHHHHHHHHHHhCccccccccccCCC
Q 043137 388 DTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFRAP 441 (445)
Q Consensus 388 ~~~~~~la~a~~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~~~~~ 441 (445)
|++++|||||++++|+|.|+|+|+||++||||||||||+|++++.|.|.+||+|
T Consensus 242 D~~iadLaVg~~a~~iK~G~p~r~Er~aKyN~LLrIeeelg~~a~~~g~~~~~~ 295 (295)
T PF00113_consen 242 DTFIADLAVGLGAGQIKTGAPCRGERIAKYNRLLRIEEELGSKAKYAGKNFRKP 295 (295)
T ss_dssp --HHHHHHHHTT-SEEEEESSSSHHHHHHHHHHHHHHHHHGGGSEE-GGGCTSC
T ss_pred chhHHHHHhccCcCeEecccchhhHHHHHhhHHHHHHHHcCCCCEECChhhhCc
Confidence 999999999999999999999999999999999999999999999999999987
|
In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E .... |
| >PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=383.35 Aligned_cols=309 Identities=16% Similarity=0.221 Sum_probs=225.5
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGK 82 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~ 82 (445)
|||++|++..+ ..+++.++|+|+|++|++|||+++.. +.+ ......+.+.++|.|+|+
T Consensus 1 mkI~~v~~~~~--~~~~~~vlVri~td~G~~G~GE~~~~-------------------~~~-~~~~~~~~~~l~p~l~G~ 58 (404)
T PRK15072 1 MKIVDAEVIVT--CPGRNFVTLKITTDDGVTGLGDATLN-------------------GRE-LAVASYLQDHVCPLLIGR 58 (404)
T ss_pred CeeEEEEEEEE--CCCCcEEEEEEEeCCCCeEEEecccC-------------------Cch-HHHHHHHHHHHHHHcCCC
Confidence 89999999765 33466789999999999999975321 111 223445778899999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCc
Q 043137 83 DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGG 162 (445)
Q Consensus 83 d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg 162 (445)
||.+++++|+.|. ... .|+.+.+...|++||||||||+.||.+|+|||+||| |..++++|++ ++.. +
T Consensus 59 d~~~~e~~~~~l~-~~~------~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LLG---G~~r~~v~~y--~~~~-~ 125 (404)
T PRK15072 59 DAHRIEDIWQYLY-RGA------YWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLLG---GASREGVMVY--GHAN-G 125 (404)
T ss_pred ChhHHHHHHHHHH-Hhc------ccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccCceEEE--EeCC-C
Confidence 9999999999997 311 122333445799999999999999999999999999 9767778775 3221 1
Q ss_pred ccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcc----cCCCCC--CCCC--------------
Q 043137 163 SHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATN----VGDEGG--FAPN-------------- 222 (445)
Q Consensus 163 ~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~----~~~~g~--~~~~-------------- 222 (445)
. +. ++..+++.+...++|+++| +|+|..... ...+.+ +.+.
T Consensus 126 ~------~~---------~~~~~~a~~~~~~Gf~~~K----iKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 186 (404)
T PRK15072 126 R------DI---------DELLDDVARHLELGYKAIR----VQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTE 186 (404)
T ss_pred C------CH---------HHHHHHHHHHHHcCCCEEE----EecCCCCcccccccccccccccccccccccccccccccH
Confidence 0 11 1223455555555677765 344421000 000000 0010
Q ss_pred --ccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeE
Q 043137 223 --IQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300 (445)
Q Consensus 223 --~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~i 300 (445)
++.+.+.++++|+++ | +++.|++|+| +.||.++++++. +.+++|++.||
T Consensus 187 ~~~~~~~~~v~avre~~---G--~~~~l~vDaN-----------------------~~w~~~~A~~~~-~~l~~~~l~~i 237 (404)
T PRK15072 187 KYLRFVPKLFEAVRNKF---G--FDLHLLHDVH-----------------------HRLTPIEAARLG-KSLEPYRLFWL 237 (404)
T ss_pred HHHHHHHHHHHHHHhhh---C--CCceEEEECC-----------------------CCCCHHHHHHHH-HhccccCCcEE
Confidence 011134555555544 5 5899999993 678999999884 56789999999
Q ss_pred ECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEec
Q 043137 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMAS 380 (445)
Q Consensus 301 EdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~ 380 (445)
|||++++|+++|++|+++++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++++
T Consensus 238 EeP~~~~d~~~~~~L~~~~~--iPIa~dEs~-~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h 314 (404)
T PRK15072 238 EDPTPAENQEAFRLIRQHTT--TPLAVGEVF-NSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSH 314 (404)
T ss_pred ECCCCccCHHHHHHHHhcCC--CCEEeCcCc-cCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCceeec
Confidence 99999999999999999998 999999985 569999999999999999999999999999999999999999998765
Q ss_pred CCCCCChhhHH--HHHHhh
Q 043137 381 HRSGETEDTFI--ADLSVG 397 (445)
Q Consensus 381 ~~~~et~~~~~--~~la~a 397 (445)
+++.++..+++ +||+.+
T Consensus 315 ~~~~~s~l~~aa~~hlaaa 333 (404)
T PRK15072 315 GPTDLSPVCMAAALHFDLW 333 (404)
T ss_pred cCcccchHHHHHHHHHHHh
Confidence 44446766554 455444
|
|
| >cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=377.14 Aligned_cols=292 Identities=18% Similarity=0.235 Sum_probs=219.3
Q ss_pred EEEEEEEEEEecCC------------CCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHH
Q 043137 4 TITAVKARQIFDSR------------GNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNV 71 (445)
Q Consensus 4 kI~~v~~~~v~~~~------------g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i 71 (445)
||++|+++.+.... ....++|+|+| +|++|||++.. + ......+
T Consensus 1 ~I~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~~-~G~~G~Ge~~~--------------------~---~~~~~~i 56 (352)
T cd03328 1 AVERVEARAYTVPTDAPEADGTLAWDATTLVLVEVRA-GGRTGLGYTYA--------------------D---AAAAALV 56 (352)
T ss_pred CeeEEEEEEEEccCCCcccCCccceeeeeEEEEEEEc-CCcEEEeCCCC--------------------h---HHHHHHH
Confidence 68999887764321 12347899998 69999985321 1 2234457
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCccee
Q 043137 72 NAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVL 151 (445)
Q Consensus 72 ~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~v 151 (445)
++.++|.|+|+||.+++++|+.|++.... +++++....|++||||||||+.||.+|+|||+||| | .++++
T Consensus 57 ~~~~~p~liG~d~~~~~~l~~~~~~~~~~------~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLG---g-~~~~v 126 (352)
T cd03328 57 DGLLAPVVEGRDALDPPAAWEAMQRAVRN------AGRPGVAAMAISAVDIALWDLKARLLGLPLARLLG---R-AHDSV 126 (352)
T ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHh------cCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhc---C-CCCCe
Confidence 77899999999999999999999832221 22344445799999999999999999999999999 8 55778
Q ss_pred eeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHH
Q 043137 152 PVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLE 231 (445)
Q Consensus 152 p~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~ 231 (445)
|+|. + ++... .+ +++..+++.+...++|+++| .|+|. +.+.+.++++
T Consensus 127 ~~y~--s--~~~~~---~~---------~e~~~~~a~~~~~~Gf~~~K----ikvg~-------------~~~~d~~~v~ 173 (352)
T cd03328 127 PVYG--S--GGFTS---YD---------DDRLREQLSGWVAQGIPRVK----MKIGR-------------DPRRDPDRVA 173 (352)
T ss_pred EEEE--e--cCCCC---CC---------HHHHHHHHHHHHHCCCCEEE----eecCC-------------CHHHHHHHHH
Confidence 7754 2 12110 01 12234555555555666654 33331 1133455666
Q ss_pred HHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHH
Q 043137 232 LLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEH 311 (445)
Q Consensus 232 ~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~ 311 (445)
.+|+++ | +++.|++|+ |+.||.++|+++ .+.+++|++.|||||++++|+++
T Consensus 174 ~vRe~~---G--~~~~l~vDa-----------------------N~~~~~~~A~~~-~~~l~~~~~~~~EeP~~~~d~~~ 224 (352)
T cd03328 174 AARRAI---G--PDAELFVDA-----------------------NGAYSRKQALAL-ARAFADEGVTWFEEPVSSDDLAG 224 (352)
T ss_pred HHHHHc---C--CCCeEEEEC-----------------------CCCCCHHHHHHH-HHHHHHhCcchhhCCCChhhHHH
Confidence 565554 5 589999999 367899999998 55689999999999999999999
Q ss_pred HHHHHHH--hCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 312 YAKLTSE--VGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 312 ~~~L~~~--~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
|++|+++ ++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++. |.. .+
T Consensus 225 ~~~l~~~~~~~--iPIa~gE~~-~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~-h~~----~~ 296 (352)
T cd03328 225 LRLVRERGPAG--MDIAAGEYA-YTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSA-HCA----PA 296 (352)
T ss_pred HHHHHhhCCCC--CCEEecccc-cCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeecc-Cch----HH
Confidence 9999999 76 999999985 56999999999999999999999999999999999999999999855 532 34
Q ss_pred HHHHHHhhhc
Q 043137 390 FIADLSVGLA 399 (445)
Q Consensus 390 ~~~~la~a~~ 399 (445)
+.+|++++++
T Consensus 297 a~~hl~aa~~ 306 (352)
T cd03328 297 LHAHVACAVP 306 (352)
T ss_pred HHHHHHHhCC
Confidence 5677777654
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=375.81 Aligned_cols=293 Identities=22% Similarity=0.292 Sum_probs=221.2
Q ss_pred EEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCC
Q 043137 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKD 83 (445)
Q Consensus 4 kI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d 83 (445)
|||+|++... .++|+|+||+|++|||++... ..+...+++.++|.|+|+|
T Consensus 1 kI~~i~~~~~-------~v~V~i~td~Gi~G~GE~~~~-----------------------~~~~~~i~~~l~p~liG~d 50 (341)
T cd03327 1 KIKSVRTRVG-------WLFVEIETDDGTVGYANTTGG-----------------------PVACWIVDQHLARFLIGKD 50 (341)
T ss_pred CeEEEEEEEE-------EEEEEEEECCCCeEEecCCCc-----------------------hHHHHHHHHHHHHHhCCCC
Confidence 7999998542 588999999999999865210 1123457788999999999
Q ss_pred CCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcc
Q 043137 84 PTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGS 163 (445)
Q Consensus 84 ~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~ 163 (445)
|.+++++|+.|+ ... ++++++++...|+|||||||||+.||.+|+|||+||| |+.++++|++.. . ++.
T Consensus 51 p~~~~~~~~~l~-~~~-----~~~~~~~~~~~a~said~AlwDl~gK~~g~Pv~~LLG---G~~r~~i~~y~~--~-~~~ 118 (341)
T cd03327 51 PSDIEKLWDQMY-RAT-----LAYGRKGIAMAAISAVDLALWDLLGKIRGEPVYKLLG---GRTRDKIPAYAS--G-LYP 118 (341)
T ss_pred chHHHHHHHHHH-hhc-----cccCCccHHHhHHHHHHHHHHHhcccccCCCHHHHcC---CCcCCceEEEEE--C-CCC
Confidence 999999999997 321 1123345545799999999999999999999999999 977778887542 1 110
Q ss_pred cCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCC
Q 043137 164 HAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYT 243 (445)
Q Consensus 164 ~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~ 243 (445)
. +. +...+++.+...++|+++| .|+|... ..+ ..+++.+.++++++|+++ |
T Consensus 119 ~-----~~---------~~~~~~a~~~~~~Gf~~~K----ikvg~~~----~~~--~~~~~~d~~~v~avr~~~---g-- 169 (341)
T cd03327 119 T-----DL---------DELPDEAKEYLKEGYRGMK----MRFGYGP----SDG--HAGLRKNVELVRAIREAV---G-- 169 (341)
T ss_pred C-----CH---------HHHHHHHHHHHHcCCCEEE----ECCCCCC----Ccc--hHHHHHHHHHHHHHHHHh---C--
Confidence 0 11 2234555555556676665 3433100 000 012234455666666554 5
Q ss_pred CCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCc
Q 043137 244 GKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKV 323 (445)
Q Consensus 244 ~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~v 323 (445)
+++.|++|+| +.||.++++++ .+.+++|++.|||||++++|+++|++|+++++ +
T Consensus 170 ~~~~l~vDan-----------------------~~~~~~~A~~~-~~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~--~ 223 (341)
T cd03327 170 YDVDLMLDCY-----------------------MSWNLNYAIKM-ARALEKYELRWIEEPLIPDDIEGYAELKKATG--I 223 (341)
T ss_pred CCCcEEEECC-----------------------CCCCHHHHHHH-HHHhhhcCCccccCCCCccCHHHHHHHHhcCC--C
Confidence 5899999993 57889999987 56688999999999999999999999999998 9
Q ss_pred eEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhc
Q 043137 324 QIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLA 399 (445)
Q Consensus 324 pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~ 399 (445)
||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|+++ .+|.. ..+.+|++.++.
T Consensus 224 pIa~gE~~-~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~-~~h~~----~~a~~hlaaa~~ 293 (341)
T cd03327 224 PISTGEHE-YTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPV-VPHAS----QIYNYHFIMSEP 293 (341)
T ss_pred CeEeccCc-cCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCee-ccccH----HHHHHHHHHhCc
Confidence 99999985 569999999999999999999999999999999999999999996 55642 345677777654
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=364.37 Aligned_cols=338 Identities=18% Similarity=0.227 Sum_probs=239.3
Q ss_pred ceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhc
Q 043137 20 PTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLD 99 (445)
Q Consensus 20 ~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~ 99 (445)
..++|+|+||+|++|||++.+...+|.+-.. |-| +..+++..|++.|+|.|+|+|+.+++++++.|. ...
T Consensus 50 ~~vlV~i~tddG~~G~GE~~~~~ysg~~g~~------~~~---~~~~~~~~i~~~laP~LiG~d~~~~~~l~~~~~-~~~ 119 (408)
T TIGR01502 50 ESLSVLLVLEDGQVVHGDCAAVQYSGAGGRD------PLF---LAKDFIPVIEKEVAPKLIGRDITNFKDMAEVFE-KMT 119 (408)
T ss_pred cEEEEEEEECCCCEEEEEeecceeccCcccc------ccc---cHHHHHHHHHHHhhHHHcCCCccCHHHHHHHHH-HHh
Confidence 4589999999999999965431212211000 001 145666778889999999999999999999998 432
Q ss_pred cCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCC--CcceeeeeeEEeecCcccCCCCcccceeeec
Q 043137 100 GTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGN--KNLVLPVPAFNVINGGSHAGNKLAMQEFMIL 177 (445)
Q Consensus 100 ~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~--~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~ 177 (445)
. + .+ +..++++|||+||||+.||..|+|||+|||..+|. .++++|+ +.+++.-.+ ..
T Consensus 120 ~--~-----~~-~~~a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~~~~~~~vp~--~~s~g~~~~-----~~------ 178 (408)
T TIGR01502 120 V--N-----RN-LHTAIRYGVSQALLDAAAKTRKTTMAEVIRDEYNPGAETNAVPV--FAQSGDDRY-----DN------ 178 (408)
T ss_pred h--c-----Cc-chhHHHHHHHHHHHHHHHHHcCCcHHHHhCcccccCCcCCceeE--EEEeeccCC-----CC------
Confidence 1 1 12 44578899999999999999999999999944333 3444554 544321000 00
Q ss_pred cCChhcHHHHHHHHHHH-HHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhC-CCCCeEEEEecccc
Q 043137 178 PVGASCFKEAMKMGVEV-YHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAG-YTGKVVIGMDVAAS 255 (445)
Q Consensus 178 p~~~~~~~~a~~~~~~~-~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g-~~~~i~l~vD~~a~ 255 (445)
+++.+.++.+...++ |+.+| |+|.. ..++.+.++.+++.+++.+ ..++..|++|+|.
T Consensus 179 --~d~m~~~a~~~~~~G~~~~~K-----kvG~~-------------~~k~~~~~~~~~~ri~~lr~~g~~~~l~vDaN~- 237 (408)
T TIGR01502 179 --VDKMILKEVDVLPHGLINSVE-----ELGLD-------------GEKLLEYVKWLRDRIIKLGREGYAPIFHIDVYG- 237 (408)
T ss_pred --HHHHHHHHHHHHhccCcccee-----eecCC-------------HHHhhhhHHHHHHHHHHhhccCCCCeEEEEcCC-
Confidence 122344555544443 54444 23421 1223455666666655443 1136789999941
Q ss_pred ccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhc---cCCeeeEECCCCcCC----HHHHHHHHHHh---CCCceE
Q 043137 256 EFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFIS---DYPIVSIEDPFDQDD----WEHYAKLTSEV---GEKVQI 325 (445)
Q Consensus 256 ~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~---~~~i~~iEdP~~~~D----~~~~~~L~~~~---~~~vpI 325 (445)
|- +.-+.||++++++++.++-+ ++++ |||||++++| +++|++|++++ +.++||
T Consensus 238 --------~~--------~~~~~~~~~~ai~~l~~l~~~~~~~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI 300 (408)
T TIGR01502 238 --------TI--------GEAFGVDIKAMADYIQTLAEAAKPFHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEI 300 (408)
T ss_pred --------Cc--------ccccCCCHHHHHHHHHHHHHhCccCCe-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceE
Confidence 00 00137899999998766433 4787 9999999865 99999999984 112999
Q ss_pred EeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh--HHHHHHhhhcCCcc
Q 043137 326 VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT--FIADLSVGLATGQI 403 (445)
Q Consensus 326 ~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~--~~~~la~a~~~~~~ 403 (445)
++||+ ++++++++++++.+++|++|||++++||||++++++++|+++|+++++++++.||.++ +++||++++++.++
T Consensus 301 ~aDEs-~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~~es~I~~aa~~Hlaaa~~~~~~ 379 (408)
T TIGR01502 301 VADEW-CNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNETNRSAEVTTHVGMATGARQV 379 (408)
T ss_pred EecCC-CCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCce
Confidence 99998 5779999999999999999999999999999999999999999999998877788765 55699999887765
Q ss_pred --ccCCCCCchhHHHHHHHHHHHHHh
Q 043137 404 --KTGAPCRSERLAKYNQLLRIEEEL 427 (445)
Q Consensus 404 --~~G~~~~~e~~~k~n~ll~i~~~l 427 (445)
|+|.-.+..-+.++||+.|.-..+
T Consensus 380 l~kpg~g~d~~~~~~~ne~~r~~~~~ 405 (408)
T TIGR01502 380 LAKPGMGVDEGMMIVKNEMNRVLALV 405 (408)
T ss_pred EecCCCCcchhHHHHHHHHHHHHHHh
Confidence 577655555699999999987644
|
This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation. |
| >cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=359.44 Aligned_cols=324 Identities=18% Similarity=0.255 Sum_probs=221.7
Q ss_pred ceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccH----HHHHHHHHHhHhhhhcCCCCCCHHHHHHHHH
Q 043137 20 PTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGV----SKAVSNVNAIIGPALAGKDPTEQTAIDNYMV 95 (445)
Q Consensus 20 ~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~----~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~ 95 (445)
..++|+|+||+|++|||++.+...++ +.+++. ..+...+++.|+|.|+|+||.+++.+|+.|+
T Consensus 13 ~~vlV~I~tddG~~G~GEa~~~~~~~-------------~~g~~~~~~~~~~~~~i~~~lap~LiG~d~~~i~~i~~~m~ 79 (369)
T cd03314 13 EAISVMLVLEDGQVAVGDCAAVQYSG-------------AGGRDPLFLAADFIPVIEKVIAPALVGRDVANFRPAAAVLD 79 (369)
T ss_pred cEEEEEEEECCCCEEEEecccccccC-------------cCCcccccchHHHHHHHHHhhhhHhcCCCHHHHHHHHHHHH
Confidence 46889999999999999753211111 111111 3345568888999999999999999999997
Q ss_pred HHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCC-----CcceeeeeeEEeecCcccCCCCcc
Q 043137 96 QQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGN-----KNLVLPVPAFNVINGGSHAGNKLA 170 (445)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~-----~~~~vp~~~~~~~~gg~~~~~~~~ 170 (445)
+.+. . | .....+++|||||||||+.||.+|+|||+||| |. .+.++|+ |.++++. .
T Consensus 80 ~~~~-~------g-~~~~~aaksAIDiALwDl~gK~~g~Pv~~LLG---g~~~~g~~r~~v~~--y~~~~~~-------~ 139 (369)
T cd03314 80 KMRL-D------G-NRLHTAIRYGVSQALLDAVALAQRRTMAEVLC---DEYGLPLADEPVPI--FAQSGDD-------R 139 (369)
T ss_pred HHhh-c------C-CcchhhHHHHHHHHHHHHHHHHhCCcHHHHcC---CcccCCCcccceEE--EEEecCc-------c
Confidence 3211 0 1 12335688999999999999999999999998 64 3455555 5432210 0
Q ss_pred cceeeeccCChhcHHHHHHHHHHH-HHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEE
Q 043137 171 MQEFMILPVGASCFKEAMKMGVEV-YHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIG 249 (445)
Q Consensus 171 ~~e~~~~p~~~~~~~~a~~~~~~~-~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~ 249 (445)
..+ .++..+++.+...++ |+.+| .| |....++. ... ...++.+ +++|.+| +++.|+
T Consensus 140 ~~~------~~~~~~~~~~~~~~~~~~~~k----~k-G~~~~K~~------~~~---~~~~~~v-~avr~~G--~~~~l~ 196 (369)
T cd03314 140 YIN------VDKMILKGADVLPHALINNVE----EK-GPKGEKLL------EYV---KWLSDRI-RKLGRPG--YHPILH 196 (369)
T ss_pred ccc------HHHHHHHHHhhhhhhhhhhHh----hc-CccHHHHH------HhH---HHHHHHH-HHHhhcC--CCCEEE
Confidence 000 011122222222111 33333 23 43211111 011 1222333 2333345 589999
Q ss_pred EeccccccccCCceeeecccCCCCCCCCcc--CHHHHHHHHHHhhccC-C--eeeEECCCCcCC----HHHHHHHHHHh-
Q 043137 250 MDVAASEFYGSDKTYDLNFKEENNDGSQKI--SGDALKDLYKSFISDY-P--IVSIEDPFDQDD----WEHYAKLTSEV- 319 (445)
Q Consensus 250 vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~--t~~~ai~~~~~~l~~~-~--i~~iEdP~~~~D----~~~~~~L~~~~- 319 (445)
+|+|.. | .|+| |.+++++++. .++++ + +.|||||++++| +++|++|++++
T Consensus 197 vDaN~~--------w-----------~~~~~~~~~~A~~~~~-~Le~~~~~~~~~iEqP~~~~d~~~~~~~~a~Lr~~~~ 256 (369)
T cd03314 197 IDVYGT--------I-----------GQAFDPDPDRAADYLA-TLEEAAAPFPLRIEGPMDAGSREAQIERMAALRAELD 256 (369)
T ss_pred EEcCCc--------c-----------ccccCCCHHHHHHHHH-HHHHhcCCCcEEEecCCCCCcchhhHHHHHHHHHHhh
Confidence 999520 0 1457 8999999855 46654 3 789999999865 89999999995
Q ss_pred ----CCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh--HHHH
Q 043137 320 ----GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT--FIAD 393 (445)
Q Consensus 320 ----~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~--~~~~ 393 (445)
+ +||++||+. .++++++++++.+++|++|||++++||||++++++++|+++|++++++|++.|+.++ +.+|
T Consensus 257 ~~~~~--iPIa~dEs~-~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~~es~I~~aa~lH 333 (369)
T cd03314 257 RRGVG--VRIVADEWC-NTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDISARVTVH 333 (369)
T ss_pred cCCCC--ceEEecCCc-CCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHH
Confidence 6 999999985 679999999999999999999999999999999999999999999888766788765 5668
Q ss_pred HHhhhcCCccc--cCCCCCchhHHHHHHHHH
Q 043137 394 LSVGLATGQIK--TGAPCRSERLAKYNQLLR 422 (445)
Q Consensus 394 la~a~~~~~~~--~G~~~~~e~~~k~n~ll~ 422 (445)
++.++++.|+. +|.-.+..-+.+.|++-|
T Consensus 334 laaa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (369)
T cd03314 334 VALATRADQMLAKPGMGVDEGLMIVTNEMNR 364 (369)
T ss_pred HHHhcCCcceeeCCCCCccchHHHHHHHHHH
Confidence 88888876654 555445556667777655
|
This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=361.93 Aligned_cols=296 Identities=21% Similarity=0.270 Sum_probs=224.6
Q ss_pred eEEEEEEEEEEecCC--------C----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFDSR--------G----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~~~--------g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+..+. + ...++|+|+||+|++|+|+++. |.+++...+...
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~~~~~~v~V~v~t~~G~~G~Ge~~~------------------~~~~~~~~~~~~ 62 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVTGHSYLFT------------------YTPAALKSLKQL 62 (355)
T ss_pred CeeEEEEEEEEEccCCCccccccceeccCcEEEEEEEECCCCeEEEeeec------------------CCCCcHHHHHHH
Confidence 799999999875321 1 2468999999999999986432 223334444444
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
+ +.++|.|+|+++ +.+++++.+.+.+. .+|+.++...|++||||||||+.||.+|+|||+||| |. +++
T Consensus 63 ~-~~l~p~LiG~~~-~~~~~~~~~~~~~~------~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pv~~LlG---g~-~~~ 130 (355)
T cd03321 63 L-DDMAALLVGEPL-APAELERALAKRFR------LLGYTGLVRMAAAGIDMAAWDALAKVHGLPLAKLLG---GN-PRP 130 (355)
T ss_pred H-HHHHHHhCCCCC-ChHHHHHHHHHHHH------hhcCCcHHHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-CCC
Confidence 4 469999999986 77888888873221 112334446799999999999999999999999999 86 456
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGL 230 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l 230 (445)
+|+ |.+++.+ + +++.++++.+...++|+++| .|.|. ++.+.+.+.+
T Consensus 131 v~~--y~s~~~~-------~---------~~~~~~~a~~~~~~Gf~~~K----iKvg~------------~~~~~d~~~v 176 (355)
T cd03321 131 VQA--YDSHGLD-------G---------AKLATERAVTAAEEGFHAVK----TKIGY------------PTADEDLAVV 176 (355)
T ss_pred eeE--EEeCCCC-------h---------HHHHHHHHHHHHHhhhHHHh----hhcCC------------CChHhHHHHH
Confidence 666 4332111 1 12335667777777898877 34441 1223445666
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHH
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWE 310 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~ 310 (445)
+++|+++ | +++.|++|+ |+.|+.+++++++ +.++++++.|||||++++|++
T Consensus 177 ~air~~~---g--~~~~l~vDa-----------------------N~~~~~~~A~~~~-~~l~~~~i~~iEeP~~~~d~~ 227 (355)
T cd03321 177 RSIRQAV---G--DGVGLMVDY-----------------------NQSLTVPEAIERG-QALDQEGLTWIEEPTLQHDYE 227 (355)
T ss_pred HHHHHhh---C--CCCEEEEeC-----------------------CCCcCHHHHHHHH-HHHHcCCCCEEECCCCCcCHH
Confidence 6666554 5 589999999 3678999999985 557899999999999999999
Q ss_pred HHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH
Q 043137 311 HYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF 390 (445)
Q Consensus 311 ~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~ 390 (445)
+|++|+++++ +||++||+. .++++++++++.+++|++|+|++++||+|++++++++|+++|+++ ++|... +.
T Consensus 228 ~~~~l~~~~~--ipia~~E~~-~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~-~~h~~~----~~ 299 (355)
T cd03321 228 GHARIASALR--TPVQMGENW-LGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPM-SSHLFQ----EI 299 (355)
T ss_pred HHHHHHHhcC--CCEEEcCCC-cCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCee-cccchH----HH
Confidence 9999999999 999999985 679999999999999999999999999999999999999999997 456432 24
Q ss_pred HHHHHhhhc
Q 043137 391 IADLSVGLA 399 (445)
Q Consensus 391 ~~~la~a~~ 399 (445)
.+|++.+++
T Consensus 300 ~~h~~aa~~ 308 (355)
T cd03321 300 SAHLLAVTP 308 (355)
T ss_pred HHHHHHhCC
Confidence 678877654
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03322 rpsA The starvation sensing protein RpsA from E | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-45 Score=366.31 Aligned_cols=289 Identities=16% Similarity=0.224 Sum_probs=219.0
Q ss_pred EEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCC
Q 043137 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKD 83 (445)
Q Consensus 4 kI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d 83 (445)
||++|+.... ..+++.++|+|+||+|++|||+++.. | . .......+++.|+|.|+|+|
T Consensus 1 kI~~ie~~~~--~~~~~~vlV~v~td~G~~G~GE~~~~---~----------------~-~~~~~~~i~~~l~p~l~G~d 58 (361)
T cd03322 1 KITAIEVIVT--CPGRNFVTLKITTDQGVTGLGDATLN---G----------------R-ELAVKAYLREHLKPLLIGRD 58 (361)
T ss_pred CeEEEEEEEE--CCCCCEEEEEEEeCCCCeEEEecccC---C----------------C-HHHHHHHHHHHHHHHcCCCC
Confidence 7999998544 33466789999999999999975321 1 0 12334567788999999999
Q ss_pred CCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcc
Q 043137 84 PTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGS 163 (445)
Q Consensus 84 ~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~ 163 (445)
|.+++.+|+.|. ... + |+.+.....|++|||+||||+.||.+|+|||+||| |..++++|+++ +. ++
T Consensus 59 ~~~~~~~~~~~~-~~~----~--~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LLG---g~~r~~v~~ya--~~-~~- 124 (361)
T cd03322 59 ANRIEDIWQYLY-RGA----Y--WRRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLLG---GKSRDGIMVYS--HA-SG- 124 (361)
T ss_pred hhHHHHHHHHHH-Hhc----c--cCCchHHHHHHHHHHHHHHHHhHhhcCCcHHHHcC---CCccCeeeEEE--eC-CC-
Confidence 999999999997 311 0 11223335699999999999999999999999999 97777888753 21 11
Q ss_pred cCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCC
Q 043137 164 HAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYT 243 (445)
Q Consensus 164 ~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~ 243 (445)
.+. ++..+++.+...++|+++|. | ..+.++++|+++ |
T Consensus 125 -----~~~---------~~~~~~a~~~~~~Gf~~~Ki----K--------------------v~~~v~avre~~---G-- 161 (361)
T cd03322 125 -----RDI---------PELLEAVERHLAQGYRAIRV----Q--------------------LPKLFEAVREKF---G-- 161 (361)
T ss_pred -----CCH---------HHHHHHHHHHHHcCCCeEee----C--------------------HHHHHHHHHhcc---C--
Confidence 011 12234444444445555541 1 034555555544 5
Q ss_pred CCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCc
Q 043137 244 GKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKV 323 (445)
Q Consensus 244 ~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~v 323 (445)
+++.|++|+ |+.||.+++++++ +.+++|++.|||||++++|+++|++|+++++ +
T Consensus 162 ~~~~l~vDa-----------------------N~~w~~~~A~~~~-~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~--~ 215 (361)
T cd03322 162 FEFHLLHDV-----------------------HHRLTPNQAARFG-KDVEPYRLFWMEDPTPAENQEAFRLIRQHTA--T 215 (361)
T ss_pred CCceEEEEC-----------------------CCCCCHHHHHHHH-HHhhhcCCCEEECCCCcccHHHHHHHHhcCC--C
Confidence 589999999 3678999999884 5688999999999999999999999999998 9
Q ss_pred eEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH--HHHHHhhh
Q 043137 324 QIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF--IADLSVGL 398 (445)
Q Consensus 324 pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~--~~~la~a~ 398 (445)
||++||+. .++.+++++++.+++|++|+|++++||||++++++++|+++|++++++++..++..+. .+||+.++
T Consensus 216 pia~gE~~-~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~i~~aa~~~laa~~ 291 (361)
T cd03322 216 PLAVGEVF-NSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPTDLSPVGMAAALHLDLWV 291 (361)
T ss_pred CEEeccCC-cCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCCCcchHHHHHHHHHHhhc
Confidence 99999985 6799999999999999999999999999999999999999999986654444576554 45565443
|
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad. |
| >PRK14017 galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-45 Score=370.35 Aligned_cols=302 Identities=14% Similarity=0.135 Sum_probs=220.3
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGK 82 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~ 82 (445)
|||++|+++.+. ...++|+|+|++|++|||+++.+. ........+ +.++|.|+|+
T Consensus 1 mkI~~i~~~~~~----~~~vlV~v~t~dG~~G~GE~~~~~--------------------~~~~~~~~~-~~~~p~l~G~ 55 (382)
T PRK14017 1 MKITKLETFRVP----PRWLFLKIETDEGIVGWGEPVVEG--------------------RARTVEAAV-HELADYLIGK 55 (382)
T ss_pred CeEEEEEEEEEC----CCEEEEEEEECCCCeEEeccccCC--------------------chHHHHHHH-HHHHHHhCCC
Confidence 899999998761 125889999999999999754311 012223334 4699999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCc
Q 043137 83 DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGG 162 (445)
Q Consensus 83 d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg 162 (445)
||.+++++|+.|+ ... .++.+.....|++||||||||+.||.+|+|||+||| |+.++++|++. +++++
T Consensus 56 d~~~~~~~~~~l~-~~~------~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LLG---g~~r~~i~~~~--~~~~~ 123 (382)
T PRK14017 56 DPRRIEDHWQVMY-RGG------FYRGGPILMSAIAGIDQALWDIKGKALGVPVHELLG---GLVRDRIRVYS--WIGGD 123 (382)
T ss_pred CHHHHHHHHHHHH-Hhc------ccCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccceeeEeE--eCCCC
Confidence 9999999999997 311 011122235699999999999999999999999999 97677787753 22211
Q ss_pred ccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCC
Q 043137 163 SHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGY 242 (445)
Q Consensus 163 ~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~ 242 (445)
+. ++.++++.+...++|+.+| .|.|.. .+..++ ..+.+.+.++++++|+++ |
T Consensus 124 -------~~---------~~~~~~a~~~~~~Gf~~~K----iKv~~~---~~~~~~-~~~~~~d~~~i~avr~~~---g- 175 (382)
T PRK14017 124 -------RP---------ADVAEAARARVERGFTAVK----MNGTEE---LQYIDS-PRKVDAAVARVAAVREAV---G- 175 (382)
T ss_pred -------CH---------HHHHHHHHHHHHcCCCEEE----EcCcCC---cccccc-HHHHHHHHHHHHHHHHHh---C-
Confidence 11 2223455555455666655 333210 000000 011233455565555554 5
Q ss_pred CCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCC
Q 043137 243 TGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEK 322 (445)
Q Consensus 243 ~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~ 322 (445)
+++.|++|+ |+.||.+++++++ +.++++++.|||||++++|++++++|+++++
T Consensus 176 -~~~~l~vDa-----------------------N~~w~~~~A~~~~-~~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~-- 228 (382)
T PRK14017 176 -PEIGIGVDF-----------------------HGRVHKPMAKVLA-KELEPYRPMFIEEPVLPENAEALPEIAAQTS-- 228 (382)
T ss_pred -CCCeEEEEC-----------------------CCCCCHHHHHHHH-HhhcccCCCeEECCCCcCCHHHHHHHHhcCC--
Confidence 589999999 3678999999884 5678999999999999999999999999998
Q ss_pred ceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCC-hhhHHHHHHhhh
Q 043137 323 VQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGET-EDTFIADLSVGL 398 (445)
Q Consensus 323 vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et-~~~~~~~la~a~ 398 (445)
+||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++++++ .++ +.++.+||+.++
T Consensus 229 ~pIa~dEs~-~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~-~~~i~~aa~~hl~aa~ 303 (382)
T PRK14017 229 IPIATGERL-FSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP-LGPIALAACLQVDAVS 303 (382)
T ss_pred CCEEeCCcc-CCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC-CCHHHHHHHHHHHHhC
Confidence 999999985 67999999999999999999999999999999999999999999876554 332 333555665554
|
|
| >TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=364.40 Aligned_cols=298 Identities=21% Similarity=0.232 Sum_probs=221.7
Q ss_pred EEEEEEEEEecCC------------CCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHH
Q 043137 5 ITAVKARQIFDSR------------GNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVN 72 (445)
Q Consensus 5 I~~v~~~~v~~~~------------g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~ 72 (445)
|++|+++.+..+. ..+.++|||+|++|++|||++.... .++|++++...+...++
T Consensus 1 I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~Ge~~~~~-------------~~~~~~~~~~~~~~~~~ 67 (368)
T TIGR02534 1 IQSVETILVDVPTIRPHKLATTTMTEQTLVLVRIRTEDGVIGYGEGTTIG-------------GLWWGGESPETIKANID 67 (368)
T ss_pred CeEEEEEEEeccccCceEEeeEEEeeccEEEEEEEECCCCeEEEecCCCC-------------CCccCCCCHHHHHHHHH
Confidence 5677776653221 2356899999999999999754311 12244555666666777
Q ss_pred HhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceee
Q 043137 73 AIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLP 152 (445)
Q Consensus 73 ~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp 152 (445)
+.++|.|+|+|+.+++.+++.|.+.+.+ ...|++|||+||||+.||.+|+|+|+||| |..+.++|
T Consensus 68 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~------------~~~a~said~AlwDl~gK~~g~Pv~~LLG---g~~r~~v~ 132 (368)
T TIGR02534 68 TYLAPVLVGRDATEIAAIMADLEKVVAG------------NRFAKAAVDTALHDAQARRLGVPVSELLG---GRVRDSVD 132 (368)
T ss_pred HhhHHHHcCCChhhHHHHHHHHHHHhcC------------CchHHHHHHHHHHHHHHHHcCCcHHHHhC---CCCCCceE
Confidence 7899999999999999999888732211 13489999999999999999999999999 97777788
Q ss_pred eeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHH-HHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHH
Q 043137 153 VPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMG-VEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLE 231 (445)
Q Consensus 153 ~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~-~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~ 231 (445)
++.. +..+ +. .+.++++.+.. .++|+++| +|+|. .+.+.+.++++
T Consensus 133 ~~~~--~~~~-------~~---------~~~~~~~~~~~~~~Gf~~~K----iKvg~------------~~~~~d~~~v~ 178 (368)
T TIGR02534 133 VTWT--LASG-------DT---------DRDIAEAEERIEEKRHRSFK----LKIGA------------RDPADDVAHVV 178 (368)
T ss_pred EEEE--EeCC-------CH---------HHHHHHHHHHHHhcCcceEE----EEeCC------------CCcHHHHHHHH
Confidence 7532 2111 00 11122333222 13555544 34431 12233456666
Q ss_pred HHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHH
Q 043137 232 LLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEH 311 (445)
Q Consensus 232 ~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~ 311 (445)
.+|+++ | +++.|++|+ |+.||.++++++ .+.++++++.|||||++++|+++
T Consensus 179 ~~re~~---g--~~~~l~~Da-----------------------N~~~~~~~A~~~-~~~l~~~~~~~iEeP~~~~d~~~ 229 (368)
T TIGR02534 179 AIAKAL---G--DRASVRVDV-----------------------NAAWDERTALHY-LPQLADAGVELIEQPTPAENREA 229 (368)
T ss_pred HHHHhc---C--CCcEEEEEC-----------------------CCCCCHHHHHHH-HHHHHhcChhheECCCCcccHHH
Confidence 555554 5 589999999 367899999998 45688999999999999999999
Q ss_pred HHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHH
Q 043137 312 YAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFI 391 (445)
Q Consensus 312 ~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~ 391 (445)
+++|+++++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|+++++++ +.++.++.+
T Consensus 230 ~~~l~~~~~--~pia~dE~~-~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~-~~~s~i~~a 305 (368)
T TIGR02534 230 LARLTRRFN--VPIMADESV-TGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGT-MLEGPIGTI 305 (368)
T ss_pred HHHHHHhCC--CCEEeCccc-CCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeec-chhhHHHHH
Confidence 999999988 999999984 6799999999999999999999999999999999999999999987765 457777654
Q ss_pred HHHHhh
Q 043137 392 ADLSVG 397 (445)
Q Consensus 392 ~~la~a 397 (445)
+.++++
T Consensus 306 a~~h~~ 311 (368)
T TIGR02534 306 ASAHFF 311 (368)
T ss_pred HHHHHH
Confidence 444443
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). |
| >cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=362.50 Aligned_cols=300 Identities=20% Similarity=0.253 Sum_probs=225.5
Q ss_pred EEEEEEEEEEecCC------------CCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHH
Q 043137 4 TITAVKARQIFDSR------------GNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNV 71 (445)
Q Consensus 4 kI~~v~~~~v~~~~------------g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i 71 (445)
||++|+++.+..+. .+..++|+|+|++|++|||++.... +++|.+++....+..+
T Consensus 1 ~I~~i~~~~~~lpl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~GE~~~~~-------------~~~~~~~~~~~~~~~l 67 (365)
T cd03318 1 KIEAIETTIVDLPTRRPHQFAGTTMHTQSLVLVRLTTSDGVVGIGEATTPG-------------GPAWGGESPETIKAII 67 (365)
T ss_pred CeEEEEEEEEeccccCceEEeeeeEeecceEEEEEEECCCCeEEEecCCCC-------------CCccCCCCHHHHHHHH
Confidence 58888887764321 2355899999999999999754211 1124455556666678
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCccee
Q 043137 72 NAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVL 151 (445)
Q Consensus 72 ~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~v 151 (445)
++.+.|.|+|+|+.+++++|+.|.+.+.+ ...|++||||||||+.||.+|+|+|+||| |..++++
T Consensus 68 ~~~~~~~l~G~~~~~~~~~~~~l~~~~~~------------~~~a~said~AlwDl~gK~~g~Pl~~LLG---g~~~~~v 132 (365)
T cd03318 68 DRYLAPLLIGRDATNIGAAMALLDRAVAG------------NLFAKAAIEMALLDAQGRRLGLPVSELLG---GRVRDSL 132 (365)
T ss_pred HHhhHHHHcCCChHHHHHHHHHHHHHhcC------------CccHHHHHHHHHHHHHHhHcCCCHHHHcC---CCcCCce
Confidence 88899999999999999999999832211 13589999999999999999999999999 8767778
Q ss_pred eeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHH-HHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHH
Q 043137 152 PVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEV-YHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGL 230 (445)
Q Consensus 152 p~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~-~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l 230 (445)
|++.. +..+ +. ++..+++.+...++ |+++| .|+|. .+.+.+.+.+
T Consensus 133 ~~~~~--~~~~-------~~---------~~~~~~~~~~~~~G~f~~~K----iKvg~------------~~~~~d~~~v 178 (365)
T cd03318 133 PVAWT--LASG-------DT---------ERDIAEAEEMLEAGRHRRFK----LKMGA------------RPPADDLAHV 178 (365)
T ss_pred EEEEE--EeCC-------CH---------HHHHHHHHHHHhCCCceEEE----EEeCC------------CChHHHHHHH
Confidence 77542 2111 00 11233444444455 65544 34331 1123345555
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHH
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWE 310 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~ 310 (445)
+++|+++ | +++.|++|+ |+.||.++++++ .+.++++++.|||||++++|++
T Consensus 179 ~avr~~~---g--~~~~l~iDa-----------------------N~~~~~~~A~~~-~~~l~~~~~~~iEeP~~~~~~~ 229 (365)
T cd03318 179 EAIAKAL---G--DRASVRVDV-----------------------NQAWDESTAIRA-LPRLEAAGVELIEQPVPRENLD 229 (365)
T ss_pred HHHHHHc---C--CCcEEEEEC-----------------------CCCCCHHHHHHH-HHHHHhcCcceeeCCCCcccHH
Confidence 5555544 4 489999999 357889999988 4568999999999999999999
Q ss_pred HHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH
Q 043137 311 HYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF 390 (445)
Q Consensus 311 ~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~ 390 (445)
++++|+++++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++++|+ .++..+.
T Consensus 230 ~~~~l~~~~~--~pia~dE~~-~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~-~~s~i~~ 305 (365)
T cd03318 230 GLARLRSRNR--VPIMADESV-SGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTM-LESSIGT 305 (365)
T ss_pred HHHHHHhhcC--CCEEcCccc-CCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCc-chhHHHH
Confidence 9999999988 999999984 67999999999999999999999999999999999999999999987764 5777654
Q ss_pred --HHHHHhhh
Q 043137 391 --IADLSVGL 398 (445)
Q Consensus 391 --~~~la~a~ 398 (445)
.+|++.++
T Consensus 306 aa~~hlaaa~ 315 (365)
T cd03318 306 AASAHLFATL 315 (365)
T ss_pred HHHHHHHHhC
Confidence 44555553
|
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=360.03 Aligned_cols=297 Identities=16% Similarity=0.191 Sum_probs=218.0
Q ss_pred EEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCC
Q 043137 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKD 83 (445)
Q Consensus 4 kI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d 83 (445)
||++|+++.+ ..+.++|+|+|++|++|||++.... . .......+++ ++|.|+|+|
T Consensus 1 ~I~~i~~~~~----~~~~~~V~i~~~~G~~G~GE~~~~~---~-----------------~~~~~~~~~~-l~p~l~G~d 55 (352)
T cd03325 1 KITKIETFVV----PPRWLFVKIETDEGVVGWGEPTVEG---K-----------------ARTVEAAVQE-LEDYLIGKD 55 (352)
T ss_pred CeEEEEEEEE----CCCEEEEEEEECCCCEEEeccccCC---c-----------------chHHHHHHHH-HHHHhCCCC
Confidence 6899998766 2356899999999999999754211 0 1222334555 999999999
Q ss_pred CCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcc
Q 043137 84 PTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGS 163 (445)
Q Consensus 84 ~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~ 163 (445)
|.+++.+++.|. ... . ++.+....+|++||||||||+.||.+|+|||+||| |..+.++|++. +++++
T Consensus 56 ~~~~~~~~~~~~-~~~-~-----~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LLG---g~~~~~i~~~~--~~~~~- 122 (352)
T cd03325 56 PMNIEHHWQVMY-RGG-F-----YRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLG---GQVRDRVRVYS--WIGGD- 122 (352)
T ss_pred HHHHHHHHHHHH-Hhc-C-----cCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccceeEEEE--eCCCC-
Confidence 999999999996 311 1 11122234699999999999999999999999999 97677787753 22211
Q ss_pred cCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCC---CCccChHHHHHHHHHHHHHh
Q 043137 164 HAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFA---PNIQENKEGLELLNTAIAKA 240 (445)
Q Consensus 164 ~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~---~~~~~~~~~l~~l~~av~~~ 240 (445)
+. +...+++.+...++|+.+| .|+|.. ..+. .+.+.+.++++++|+++
T Consensus 123 ------~~---------~~~~~~~~~~~~~Gf~~~K----iKvg~~-------~~~~~~~~~~~~D~~~i~avr~~~--- 173 (352)
T cd03325 123 ------RP---------SDVAEAARARREAGFTAVK----MNATEE-------LQWIDTSKKVDAAVERVAALREAV--- 173 (352)
T ss_pred ------CH---------HHHHHHHHHHHHcCCCEEE----ecCCCC-------cccCCCHHHHHHHHHHHHHHHHhh---
Confidence 11 1123444444444565554 344421 0111 11233455555555544
Q ss_pred CCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhC
Q 043137 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVG 320 (445)
Q Consensus 241 g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~ 320 (445)
| +++.|++|+ |+.||.++++++. +.++++++.|||||++++|++++++|+++++
T Consensus 174 g--~~~~l~vDa-----------------------N~~~~~~~A~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~ 227 (352)
T cd03325 174 G--PDIDIGVDF-----------------------HGRVSKPMAKDLA-KELEPYRLLFIEEPVLPENVEALAEIAARTT 227 (352)
T ss_pred C--CCCEEEEEC-----------------------CCCCCHHHHHHHH-HhccccCCcEEECCCCccCHHHHHHHHHhCC
Confidence 5 589999999 3678999999884 5678999999999999999999999999998
Q ss_pred CCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh--HHHHHHhhh
Q 043137 321 EKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT--FIADLSVGL 398 (445)
Q Consensus 321 ~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~--~~~~la~a~ 398 (445)
+||++||+. .+++++.++++.+++|++|+|++++||+|++++++++|+++|++++ +|.. ++.++ +.+||+.++
T Consensus 228 --~pia~dEs~-~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~-~h~~-~s~i~~~a~~hlaa~~ 302 (352)
T cd03325 228 --IPIATGERL-FSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALA-PHCP-LGPIALAASLHVDAST 302 (352)
T ss_pred --CCEEecccc-cCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEe-ccCC-CChHHHHHHHHHHHhc
Confidence 999999985 5699999999999999999999999999999999999999999986 4533 66555 455555544
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=359.41 Aligned_cols=283 Identities=18% Similarity=0.173 Sum_probs=207.8
Q ss_pred CceEEEEEEeCC---C--ceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCC--------
Q 043137 19 NPTVEVDVTTSD---G--HVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPT-------- 85 (445)
Q Consensus 19 ~~~v~V~v~td~---G--~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~-------- 85 (445)
..+++|+|+||+ | ++|||++..+. ... ...+++.++|.|+|+||.
T Consensus 26 ~~~~lV~v~td~~~~G~~~~G~Ge~~~~~--------------------~~~--~~~i~~~~~p~LiG~dp~~~~~~~~~ 83 (385)
T cd03326 26 LTTSLVAVVTDVVRDGRPVVGYGFDSIGR--------------------YAQ--GGLLRERFIPRLLAAAPDSLLDDAGG 83 (385)
T ss_pred cEEEEEEEEeccccCCCceeEEEeccCCc--------------------hhH--HHHHHHHHHHHhcCCChHHhhhcccc
Confidence 356899999999 9 99998753210 011 134778899999999999
Q ss_pred --CHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCC-----cceeeeeeEEe
Q 043137 86 --EQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNK-----NLVLPVPAFNV 158 (445)
Q Consensus 86 --~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~-----~~~vp~~~~~~ 158 (445)
+++++|+.|++.. . ++.......|+|||||||||+.||.+|+|||+||| |+. ++++|+|+ +
T Consensus 84 ~~~~~~l~~~~~~~~--~-----~~~~~~~~~A~saID~ALwDl~gK~~g~Pv~~LLG---G~~~~~~~~~~v~~y~--~ 151 (385)
T cd03326 84 NLDPARAWAAMMRNE--K-----PGGHGERAVAVGALDMAVWDAVAKIAGLPLYRLLA---RRYGRGQADPRVPVYA--A 151 (385)
T ss_pred cCCHHHHHHHHHhcC--c-----cCCCCHHHHHHHHHHHHHHHHhHHHcCCcHHHHcC---CcccCCCCCCeEEEEE--e
Confidence 4499999997311 0 11222335799999999999999999999999999 853 35677644 2
Q ss_pred ecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHH
Q 043137 159 INGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIA 238 (445)
Q Consensus 159 ~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~ 238 (445)
++...+ .. ..++..+++.+...++|+++| .|+|. .+.+.+.++++.+|+++
T Consensus 152 --~~~~~~--~~--------~~~~~~~~a~~~~~~Gf~~~K----ikvg~------------~~~~~di~~v~avRe~~- 202 (385)
T cd03326 152 --GGYYYP--GD--------DLGRLRDEMRRYLDRGYTVVK----IKIGG------------APLDEDLRRIEAALDVL- 202 (385)
T ss_pred --cCCCCC--CC--------CHHHHHHHHHHHHHCCCCEEE----EeCCC------------CCHHHHHHHHHHHHHhc-
Confidence 121100 00 011223455544445565554 33331 11233455666555554
Q ss_pred HhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHH
Q 043137 239 KAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSE 318 (445)
Q Consensus 239 ~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~ 318 (445)
| +++.|++|+ |+.||.++++++ .+.+++|++.|||||++++|++++++|+++
T Consensus 203 --G--~~~~l~vDa-----------------------N~~w~~~~A~~~-~~~l~~~~~~~iEeP~~~~d~~~~~~L~~~ 254 (385)
T cd03326 203 --G--DGARLAVDA-----------------------NGRFDLETAIAY-AKALAPYGLRWYEEPGDPLDYALQAELADH 254 (385)
T ss_pred --C--CCCeEEEEC-----------------------CCCCCHHHHHHH-HHHhhCcCCCEEECCCCccCHHHHHHHHhh
Confidence 6 589999999 367899999997 556899999999999999999999999999
Q ss_pred hCCCceEEeCcccccCHHHHHHHHhcCCC----CEEEeccCCcccHHHHHHHHHHHHHcCCc--EEecCCCCCChhhHHH
Q 043137 319 VGEKVQIVGDDLLVTNPKRVEKAIKEKTC----NALLLKVNQIGSVTESIEAVRMSKQAGWG--VMASHRSGETEDTFIA 392 (445)
Q Consensus 319 ~~~~vpI~gde~~~~~~~~~~~~i~~~a~----d~v~ik~~~~GGit~a~~ia~~A~~~g~~--~~~~~~~~et~~~~~~ 392 (445)
++ +||++||+. .++++++++++.+++ |++|+|++++||||++++++++|+++|++ ++.+|. ...+.+
T Consensus 255 ~~--iPIa~gEs~-~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~lA~a~gi~~~~~~pH~----~~~a~l 327 (385)
T cd03326 255 YD--GPIATGENL-FSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDVLEAHGWSRRRFFPHG----GHLMSL 327 (385)
T ss_pred CC--CCEEcCCCc-CCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHHHHHcCCCCceeecch----HHHHHH
Confidence 98 999999985 569999999999988 99999999999999999999999999998 356674 234566
Q ss_pred HHHhhhc
Q 043137 393 DLSVGLA 399 (445)
Q Consensus 393 ~la~a~~ 399 (445)
|++.+..
T Consensus 328 hl~aa~~ 334 (385)
T cd03326 328 HIAAGLG 334 (385)
T ss_pred HHHhcCC
Confidence 7776644
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK15440 L-rhamnonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-44 Score=361.49 Aligned_cols=276 Identities=18% Similarity=0.211 Sum_probs=207.4
Q ss_pred ceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhc
Q 043137 20 PTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLD 99 (445)
Q Consensus 20 ~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~ 99 (445)
.+++|||+||+|++|+|++..+ ......+++.|+|.|+|+||.+++++|+.|++..
T Consensus 57 ~~vlVrI~td~G~~G~Ge~~~~-----------------------~~~~~~v~~~l~p~LiG~dp~~~e~l~~~m~~~~- 112 (394)
T PRK15440 57 GTLVVEVEAENGQVGFAVSTAG-----------------------EMGAFIVEKHLNRFIEGKCVSDIELIWDQMLNAT- 112 (394)
T ss_pred ceEEEEEEECCCCEEEEeCCCc-----------------------HHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhc-
Confidence 4588999999999999874211 1123457788999999999999999999998321
Q ss_pred cCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeeccC
Q 043137 100 GTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPV 179 (445)
Q Consensus 100 ~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~ 179 (445)
. .++++++..+|+|||||||||+.||.+|+|||+||| |..++++|+|+ + ++. .
T Consensus 113 ~-----~~g~~g~~~~A~saIDiALwDl~gK~~g~Pv~~LLG---G~~r~~v~~y~--~--~~~--------~------- 165 (394)
T PRK15440 113 L-----YYGRKGLVMNTISCVDLALWDLLGKVRGLPVYKLLG---GAVRDELQFYA--T--GAR--------P------- 165 (394)
T ss_pred c-----ccCCccHhhhHHHHHHHHHHHHhhhHcCCcHHHHcC---CCCCCeeEEEe--c--CCC--------h-------
Confidence 1 122344545799999999999999999999999999 97777888643 2 110 0
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEecccccccc
Q 043137 180 GASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYG 259 (445)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~ 259 (445)
+.+. .++|+++| +|+|.. .. .| ..+++.+.++++.+|+++ | +++.|++|+
T Consensus 166 -----~~a~---~~Gf~~~K----ik~~~g-~~---~g--~~~~~~di~~v~avReav---G--~d~~l~vDa------- 215 (394)
T PRK15440 166 -----DLAK---EMGFIGGK----MPLHHG-PA---DG--DAGLRKNAAMVADMREKV---G--DDFWLMLDC------- 215 (394)
T ss_pred -----HHHH---hCCCCEEE----EcCCcC-cc---cc--hHHHHHHHHHHHHHHHhh---C--CCCeEEEEC-------
Confidence 1111 13566554 333210 00 01 011233455666665554 6 589999999
Q ss_pred CCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHH
Q 043137 260 SDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVE 339 (445)
Q Consensus 260 ~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~ 339 (445)
|+.||.++|+++ .+.+++|++.|||||++++|+++|++|+++++.++||+++|+. .++++++
T Consensus 216 ----------------N~~~~~~~Ai~~-~~~le~~~l~wiEEPl~~~d~~~~~~L~~~~~~~i~ia~gE~~-~~~~~~~ 277 (394)
T PRK15440 216 ----------------WMSLDVNYATKL-AHACAPYGLKWIEECLPPDDYWGYRELKRNAPAGMMVTSGEHE-ATLQGFR 277 (394)
T ss_pred ----------------CCCCCHHHHHHH-HHHhhhcCCcceeCCCCcccHHHHHHHHHhCCCCCceecCCCc-cCHHHHH
Confidence 367899999988 5668999999999999999999999999997655788889985 5699999
Q ss_pred HHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhc
Q 043137 340 KAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLA 399 (445)
Q Consensus 340 ~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~ 399 (445)
++++.+++|++|+|+++|||||+++|++++|+++|+++ .+|.+ ....+|++++..
T Consensus 278 ~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~-~pH~~----~~~~~hl~aa~~ 332 (394)
T PRK15440 278 TLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLV-VPHGS----SVYSHHFVITRT 332 (394)
T ss_pred HHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCee-cccCH----HHHHHHHHhhCc
Confidence 99999999999999999999999999999999999996 56732 245567776654
|
|
| >cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=362.21 Aligned_cols=291 Identities=17% Similarity=0.212 Sum_probs=209.3
Q ss_pred eEEEEEEEEEEecCC--------C---C---ceEEEEEEeCC-CceEEEeccCCCccccccceeeccCCCCCCCccHHHH
Q 043137 3 ITITAVKARQIFDSR--------G---N---PTVEVDVTTSD-GHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKA 67 (445)
Q Consensus 3 mkI~~v~~~~v~~~~--------g---~---~~v~V~v~td~-G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a 67 (445)
+|||+|+++.+..+. . . ..++|+|+||+ |++|||++... +.+....
T Consensus 1 ~kI~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~V~i~td~~G~~G~Ge~~~~-------------------~~~~~~~ 61 (415)
T cd03324 1 IKITALEVRDVRFPTSLELDGSDAMNPDPDYSAAYVVLRTDAAGLKGHGLTFTI-------------------GRGNEIV 61 (415)
T ss_pred CeEEEEEEEEEEeecCccCCCcccccCCCCceEEEEEEEecCCCCEEEEEeccC-------------------CCchHHH
Confidence 489999998885221 1 1 35899999999 99999975421 1112222
Q ss_pred HHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccc-c-ccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccC
Q 043137 68 VSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGW-C-KQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSG 145 (445)
Q Consensus 68 ~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~-~-~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G 145 (445)
.. +.+.++|.|+|+||.+++.+++.+++.+..... +.| + .+++...|+|||||||||+.||.+|+|||+||| |
T Consensus 62 ~~-~~~~lap~liG~d~~~i~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLG---g 136 (415)
T cd03324 62 CA-AIEALAHLVVGRDLESIVADMGKFWRRLTSDSQ-LRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLV---D 136 (415)
T ss_pred HH-HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc-ceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhc---C
Confidence 33 346799999999999997766666533322100 011 1 123334699999999999999999999999999 8
Q ss_pred CCc-----------------------------------------ceeeeeeEEeecCcccCCCCcccceeeeccCChhcH
Q 043137 146 NKN-----------------------------------------LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCF 184 (445)
Q Consensus 146 ~~~-----------------------------------------~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~ 184 (445)
..+ +++|+ |++ ++++.. .+ +++..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--y~~-~~~~~~---~~---------~~~~~ 201 (415)
T cd03324 137 MTPEELVSCIDFRYITDALTPEEALEILRRGQPGKAAREADLLAEGYPA--YTT-SAGWLG---YS---------DEKLR 201 (415)
T ss_pred CCHHHhhhcccceeeccccCHHHHHHHhhhcccchhhhhhhhhccCCce--eec-CCcccC---CC---------HHHHH
Confidence 433 33444 321 112100 01 12234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCcee
Q 043137 185 KEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTY 264 (445)
Q Consensus 185 ~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y 264 (445)
+++.+...++|+++| .|+|. +.+.+.++++++|+++ | +++.|++|+
T Consensus 202 ~~a~~~~~~Gf~~~K----iKvg~-------------~~~~d~~~v~avRe~v---G--~~~~L~vDa------------ 247 (415)
T cd03324 202 RLCKEALAQGFTHFK----LKVGA-------------DLEDDIRRCRLAREVI---G--PDNKLMIDA------------ 247 (415)
T ss_pred HHHHHHHHcCCCEEE----EeCCC-------------CHHHHHHHHHHHHHhc---C--CCCeEEEEC------------
Confidence 555555555666554 33331 1233455666565554 6 689999999
Q ss_pred eecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHh---CCCceEEeCcccccCHHHHHHH
Q 043137 265 DLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEV---GEKVQIVGDDLLVTNPKRVEKA 341 (445)
Q Consensus 265 ~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~---~~~vpI~gde~~~~~~~~~~~~ 341 (445)
|+.||.++++++ .+.++++++.|||||++++|+++|++|++++ + +||++||+. .++++++++
T Consensus 248 -----------N~~w~~~~A~~~-~~~L~~~~l~~iEEP~~~~d~~~~~~L~~~~~~~~--iPIa~gEs~-~~~~~~~~l 312 (415)
T cd03324 248 -----------NQRWDVPEAIEW-VKQLAEFKPWWIEEPTSPDDILGHAAIRKALAPLP--IGVATGEHC-QNRVVFKQL 312 (415)
T ss_pred -----------CCCCCHHHHHHH-HHHhhccCCCEEECCCCCCcHHHHHHHHHhcccCC--CceecCCcc-CCHHHHHHH
Confidence 367899999988 5568999999999999999999999999998 6 999999985 569999999
Q ss_pred HhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC
Q 043137 342 IKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 342 i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~ 382 (445)
++.+++|++|+|++++||||++++++++|+++|+++ .+|.
T Consensus 313 l~~~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~-~pH~ 352 (415)
T cd03324 313 LQAGAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPV-CPHA 352 (415)
T ss_pred HHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeE-EEcC
Confidence 999999999999999999999999999999999997 5563
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=355.53 Aligned_cols=295 Identities=16% Similarity=0.177 Sum_probs=216.4
Q ss_pred EEEEEEEEEEecC------------CC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHH
Q 043137 4 TITAVKARQIFDS------------RG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKA 67 (445)
Q Consensus 4 kI~~v~~~~v~~~------------~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a 67 (445)
||++|+++.+..+ .+ +..++|||+||+|++|||+.... . .+
T Consensus 1 ~I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~Vri~td~G~~G~G~~~~~----------------------~-~~ 57 (368)
T cd03329 1 KITDVEVTVFEYPTQPVSFDGGHHHPGPAGTRKLALLTIETDEGAKGHAFGGRP----------------------V-TD 57 (368)
T ss_pred CeEEEEEEEEEeecCcccccccccCCCCCccceEEEEEEEECCCCeEEEecCCc----------------------h-hH
Confidence 6888888877421 11 24689999999999999863210 1 12
Q ss_pred HHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCC
Q 043137 68 VSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNK 147 (445)
Q Consensus 68 ~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~ 147 (445)
...+.+.++|.|+|+||.+++++|+.|.+.+.+ ....|++||||||||+.||.+|+|||+||| | .
T Consensus 58 ~~~~~~~l~p~liG~d~~~~~~~~~~~~~~~~~-----------~~~~A~said~AlwDl~gk~~g~Pl~~LLG---g-~ 122 (368)
T cd03329 58 PALVDRFLKKVLIGQDPLDRERLWQDLWRLQRG-----------LTDRGLGLVDIALWDLAGKYLGLPVHRLLG---G-Y 122 (368)
T ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHhcC-----------cchhHHHHHHHHHHHHhhhhcCCcHHHHhh---c-c
Confidence 335677899999999999999999999842221 224699999999999999999999999999 8 5
Q ss_pred cceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChH
Q 043137 148 NLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENK 227 (445)
Q Consensus 148 ~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~ 227 (445)
++++|++.. +..+... .... .+++..+++.+...+||+.+| .|.|. ....+.+.
T Consensus 123 ~~~v~~y~s--~~~~~~~-~~~~--------~~~~~~~~a~~~~~~Gf~~~K----ik~~~-----------~~~~~~di 176 (368)
T cd03329 123 REKIPAYAS--TMVGDDL-EGLE--------SPEAYADFAEECKALGYRAIK----LHPWG-----------PGVVRRDL 176 (368)
T ss_pred ccceeEEEe--cCCCccc-ccCC--------CHHHHHHHHHHHHHcCCCEEE----EecCC-----------chhHHHHH
Confidence 567777543 2111000 0000 011223334333333454443 22110 01123345
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcC
Q 043137 228 EGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQD 307 (445)
Q Consensus 228 ~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~ 307 (445)
+.++.+|+++ | +++.|++|+| +.||.++++++ .+.++++++.|||||++++
T Consensus 177 ~~i~~vR~~~---G--~~~~l~vDan-----------------------~~~~~~~A~~~-~~~l~~~~l~~iEeP~~~~ 227 (368)
T cd03329 177 KACLAVREAV---G--PDMRLMHDGA-----------------------HWYSRADALRL-GRALEELGFFWYEDPLREA 227 (368)
T ss_pred HHHHHHHHHh---C--CCCeEEEECC-----------------------CCcCHHHHHHH-HHHhhhcCCCeEeCCCCch
Confidence 6666666655 5 5899999993 67889999987 4567899999999999999
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccC-HHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCC
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTN-PKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGET 386 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~-~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et 386 (445)
|++++++|+++++ +||++||+. .+ +++++++++.+++|++|+|++++||||++++++++|+++|+++++ |.+
T Consensus 228 d~~~~~~l~~~~~--ipIa~~E~~-~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~-h~~--- 300 (368)
T cd03329 228 SISSYRWLAEKLD--IPILGTEHS-RGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVEL-HGN--- 300 (368)
T ss_pred hHHHHHHHHhcCC--CCEEccCcc-cCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEE-ECh---
Confidence 9999999999998 999999985 55 999999999999999999999999999999999999999999865 532
Q ss_pred hhhHHHHHHhhhc
Q 043137 387 EDTFIADLSVGLA 399 (445)
Q Consensus 387 ~~~~~~~la~a~~ 399 (445)
.++.+|++.+++
T Consensus 301 -~~a~~hlaaa~~ 312 (368)
T cd03329 301 -GAANLHVIAAIR 312 (368)
T ss_pred -HHHHHHHHhcCC
Confidence 456678877754
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=343.91 Aligned_cols=286 Identities=15% Similarity=0.170 Sum_probs=214.8
Q ss_pred CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHh
Q 043137 19 NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQL 98 (445)
Q Consensus 19 ~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l 98 (445)
+..++|+|+|++|++|||++...+. +.|.+++...+...+++.++|.|+| ++.+++++++.|. ..
T Consensus 21 ~~~~lV~v~~~~G~~G~GE~~~~~~-------------~~~~~~~~~~~~~~i~~~~~~~l~g-~~~~~~~~~~~~~-~~ 85 (324)
T TIGR01928 21 RDCLIIELIDDKGNAGFGEVVAFQT-------------PWYTHETIATVKHIIEDFFEPNINK-EFEHPSEALELVR-SL 85 (324)
T ss_pred CcEEEEEEEECCCCeEEEeccccCC-------------CCcCcccHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHH-Hc
Confidence 4668899999999999997542110 1244555666666777888999999 9999999998887 33
Q ss_pred ccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeecc
Q 043137 99 DGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILP 178 (445)
Q Consensus 99 ~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p 178 (445)
.+ ...|++||||||||+.||.+|+|||+||| | .++++|++ .++ |..
T Consensus 86 ~~------------~~~a~said~AlwDl~gk~~g~Pl~~llG---g-~~~~i~~y--~~~--~~~-------------- 131 (324)
T TIGR01928 86 KG------------TPMAKAGLEMALWDMYHKLPSFSLAYGQG---K-LRDKAPAG--AVS--GLA-------------- 131 (324)
T ss_pred cC------------CcHHHHHHHHHHHHHHHhhhCCcHHHHhC---C-CCCeEEEe--EEc--CCC--------------
Confidence 11 13599999999999999999999999999 8 45677764 332 210
Q ss_pred CChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccc
Q 043137 179 VGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFY 258 (445)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~ 258 (445)
.+++..+++.+...++|+.+| .|+| + +.+.+.++.+|+++ +++.|++|+|
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~K----iKv~-------------~--~~d~~~v~~vr~~~------~~~~l~vDaN----- 181 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIK----LKIT-------------P--QIMHQLVKLRRLRF------PQIPLVIDAN----- 181 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEE----EEeC-------------C--chhHHHHHHHHHhC------CCCcEEEECC-----
Confidence 112334455555555665554 3322 1 22355565555543 5789999993
Q ss_pred cCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHH
Q 043137 259 GSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRV 338 (445)
Q Consensus 259 ~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~ 338 (445)
+.||.+++ .+ .+.+++|++.|||||++++|++++++|+++++ +||++||+. .+++++
T Consensus 182 ------------------~~~~~~~a-~~-~~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~--~pia~dEs~-~~~~~~ 238 (324)
T TIGR01928 182 ------------------ESYDLQDF-PR-LKELDRYQLLYIEEPFKIDDLSMLDELAKGTI--TPICLDESI-TSLDDA 238 (324)
T ss_pred ------------------CCCCHHHH-HH-HHHHhhCCCcEEECCCChhHHHHHHHHHhhcC--CCEeeCCCc-CCHHHH
Confidence 56788775 44 56789999999999999999999999999998 999999984 679999
Q ss_pred HHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCccccCC
Q 043137 339 EKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGA 407 (445)
Q Consensus 339 ~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~ 407 (445)
+++++.+++|++|+|++++||||++++++++|+++|++++++++ .|++++.++.++++...++...|.
T Consensus 239 ~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~-~es~i~~aa~~hla~~~~~~~~~~ 306 (324)
T TIGR01928 239 RNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGM-LETGISRAFNVALASLGGNDYPGD 306 (324)
T ss_pred HHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcce-EcccHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999999999999999988764 588776555444444344444443
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase. |
| >cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=348.46 Aligned_cols=279 Identities=18% Similarity=0.222 Sum_probs=215.1
Q ss_pred CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHh
Q 043137 19 NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQL 98 (445)
Q Consensus 19 ~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l 98 (445)
+..++|||+|++|++|||++...+. +.|.+++...+...+++.+.|.|+|+|+.+++++|+.|. .+
T Consensus 24 ~~~~~Vrv~t~~G~~G~GE~~~~~~-------------~~~~~~~~~~~~~~i~~~~~p~l~g~~~~~~~~~~~~~~-~~ 89 (354)
T cd03317 24 REFLIVELTDEEGITGYGEVVAFEG-------------PFYTEETNATAWHILKDYLLPLLLGREFSHPEEVSERLA-PI 89 (354)
T ss_pred eeEEEEEEEECCCCeEEEecCCCCC-------------CcccCCCHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH-Hh
Confidence 3568899999999999997543210 125566666777778888999999999999999999988 43
Q ss_pred ccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeecc
Q 043137 99 DGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILP 178 (445)
Q Consensus 99 ~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p 178 (445)
.+ ...|++||||||||+.||.+|+|+|+||| | .+.++|++. +++.+ +.
T Consensus 90 ~~------------~~~a~aaid~AlwDl~gk~~g~Pv~~LLG---g-~~~~v~~~~--s~~~~-------~~------- 137 (354)
T cd03317 90 KG------------NNMAKAGLEMAVWDLYAKAQGQSLAQYLG---G-TRDSIPVGV--SIGIQ-------DD------- 137 (354)
T ss_pred cC------------ChHHHHHHHHHHHHHHHHHcCCCHHHHhC---C-CCCeEEeeE--EEeCC-------Cc-------
Confidence 21 13599999999999999999999999999 8 456777643 32111 00
Q ss_pred CChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccc
Q 043137 179 VGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFY 258 (445)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~ 258 (445)
.++..+++.+...++|+++| +|+| + +.+.++++.+|+++ +++.|++|+|
T Consensus 138 -~~~~~~~~~~~~~~Gf~~~K----iKv~-------------~--~~d~~~l~~vr~~~------g~~~l~lDaN----- 186 (354)
T cd03317 138 -VEQLLKQIERYLEEGYKRIK----LKIK-------------P--GWDVEPLKAVRERF------PDIPLMADAN----- 186 (354)
T ss_pred -HHHHHHHHHHHHHcCCcEEE----EecC-------------h--HHHHHHHHHHHHHC------CCCeEEEECC-----
Confidence 02223444444444565554 3322 1 23456666665554 4789999993
Q ss_pred cCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHH
Q 043137 259 GSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRV 338 (445)
Q Consensus 259 ~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~ 338 (445)
+.||.+++. + .+.+++|++.|||||++++|++++++|+++++ +||++||+. .+++++
T Consensus 187 ------------------~~~~~~~a~-~-~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~--~pia~dEs~-~~~~~~ 243 (354)
T cd03317 187 ------------------SAYTLADIP-L-LKRLDEYGLLMIEQPLAADDLIDHAELQKLLK--TPICLDESI-QSAEDA 243 (354)
T ss_pred ------------------CCCCHHHHH-H-HHHhhcCCccEEECCCChhHHHHHHHHHhhcC--CCEEeCCcc-CCHHHH
Confidence 568888874 5 46689999999999999999999999999998 999999984 679999
Q ss_pred HHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhh
Q 043137 339 EKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGL 398 (445)
Q Consensus 339 ~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~ 398 (445)
+++++.+++|++|+|++++||||++++++++|+++|+++++++ +.|+..+.+++++++.
T Consensus 244 ~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~-~~es~l~~~a~~hla~ 302 (354)
T cd03317 244 RKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGG-MLESGIGRAHNVALAS 302 (354)
T ss_pred HHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecC-cccchHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998877 4688887766666553
|
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=348.95 Aligned_cols=306 Identities=20% Similarity=0.243 Sum_probs=222.2
Q ss_pred EEEEEEEEEEecCC--------CCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhH
Q 043137 4 TITAVKARQIFDSR--------GNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAII 75 (445)
Q Consensus 4 kI~~v~~~~v~~~~--------g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l 75 (445)
||++|+++.+..+. .+..++|+|+|++|++|||++...+. .......+++.+
T Consensus 1 kI~~i~~~~~~~p~~~~~~~~~~~~~~~V~v~~~~G~~G~GE~~~~~~--------------------~~~~~~~l~~~~ 60 (357)
T cd03316 1 KITDVETFVLRVPLPEPGGAVTWRNLVLVRVTTDDGITGWGEAYPGGR--------------------PSAVAAAIEDLL 60 (357)
T ss_pred CeeEEEEEEEecCCcccccccccceEEEEEEEeCCCCEEEEeccCCCC--------------------chHHHHHHHHHH
Confidence 68999988775321 24679999999999999997643210 123345677779
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeee
Q 043137 76 GPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPA 155 (445)
Q Consensus 76 ~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~ 155 (445)
+|.|+|+|+.+++++|+.|.+.... .+.+.....|++|||+||||+.||.+|+|||+||| |..+.++|++.
T Consensus 61 ~p~l~G~~~~~~~~~~~~l~~~~~~------~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llG---g~~~~~v~~~~ 131 (357)
T cd03316 61 APLLIGRDPLDIERLWEKLYRRLFW------RGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLG---GKVRDRVRVYA 131 (357)
T ss_pred HHHccCCChHHHHHHHHHHHHhccc------CCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccC---CccCCceeeEE
Confidence 9999999999999999999832211 11122335799999999999999999999999999 87567777744
Q ss_pred EEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHH
Q 043137 156 FNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNT 235 (445)
Q Consensus 156 ~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~ 235 (445)
++.++. .+. +...+++.+...++|+.+| .|.|.... .....+.+.+.++.+|+
T Consensus 132 --~~~~~~-----~~~---------~~~~~~a~~~~~~Gf~~~K----ik~g~~~~-------~~~~~~~d~~~v~~ir~ 184 (357)
T cd03316 132 --SGGGYD-----DSP---------EELAEEAKRAVAEGFTAVK----LKVGGPDS-------GGEDLREDLARVRAVRE 184 (357)
T ss_pred --ecCCCC-----CCH---------HHHHHHHHHHHHcCCCEEE----EcCCCCCc-------chHHHHHHHHHHHHHHH
Confidence 321110 001 1223344433334554443 33331000 00002234555555555
Q ss_pred HHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHH
Q 043137 236 AIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKL 315 (445)
Q Consensus 236 av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L 315 (445)
++ | +++.|++|+ |+.||.+++++++ +.++++++.|||||++++|++++++|
T Consensus 185 ~~---g--~~~~l~vDa-----------------------N~~~~~~~a~~~~-~~l~~~~i~~iEqP~~~~~~~~~~~l 235 (357)
T cd03316 185 AV---G--PDVDLMVDA-----------------------NGRWDLAEAIRLA-RALEEYDLFWFEEPVPPDDLEGLARL 235 (357)
T ss_pred hh---C--CCCEEEEEC-----------------------CCCCCHHHHHHHH-HHhCccCCCeEcCCCCccCHHHHHHH
Confidence 44 5 589999999 3678899999884 56788999999999999999999999
Q ss_pred HHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh--hHHHH
Q 043137 316 TSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED--TFIAD 393 (445)
Q Consensus 316 ~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~--~~~~~ 393 (445)
+++++ +||++||+. .+++++.++++.+++|++|+|++++||++++++++++|+++|++++++++ .+ .+ ++.+|
T Consensus 236 ~~~~~--ipi~~dE~~-~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~-~~-~i~~aa~~h 310 (357)
T cd03316 236 RQATS--VPIAAGENL-YTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGA-GG-PIGLAASLH 310 (357)
T ss_pred HHhCC--CCEEecccc-ccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCC-CC-HHHHHHHHH
Confidence 99988 999999984 67999999999999999999999999999999999999999999877664 44 44 45567
Q ss_pred HHhhhc
Q 043137 394 LSVGLA 399 (445)
Q Consensus 394 la~a~~ 399 (445)
|+.+++
T Consensus 311 la~a~~ 316 (357)
T cd03316 311 LAAALP 316 (357)
T ss_pred HHHhCc
Confidence 766654
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=349.12 Aligned_cols=310 Identities=15% Similarity=0.188 Sum_probs=214.3
Q ss_pred EEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHH
Q 043137 4 TITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNV 71 (445)
Q Consensus 4 kI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i 71 (445)
|||+|++..+.. +.+ ...++|+|+||+|++|||+++.+ ..++..+
T Consensus 1 ~I~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~Vrv~td~G~~G~Ge~~~~-----------------------~~~~~~~ 57 (395)
T cd03323 1 KITEMRVTPVAGHDSPLLNLSGAHEPFFTRNIVELTDDNGNTGVGESPGG-----------------------AEALEAL 57 (395)
T ss_pred CeEEEEEEEEeccCCccccccccCCCcceEEEEEEEECCCCeeccccCCC-----------------------HHHHHHH
Confidence 699999877742 111 36789999999999999865421 1112234
Q ss_pred HHhHhhhhcCCCC-CCHHHHHHHHHHHhccCCCccccccc-------ccchhhHHHHHHHHHHHHHHhcCCchhhhhccc
Q 043137 72 NAIIGPALAGKDP-TEQTAIDNYMVQQLDGTVNEWGWCKQ-------KLGANAILAVSLAVCKAGAHVKKIPLYKHIAEL 143 (445)
Q Consensus 72 ~~~l~p~LiG~d~-~~~e~i~~~l~~~l~~~~~~~~~~~~-------~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~ 143 (445)
..++|.|+|+++ .+.+.+|+.|++.+... . .|+. .+...|++||||||||+.||.+|+|||+|||
T Consensus 58 -~~~~~~llg~~~~~~~~~~~~~~~~~~~~~-~---~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLG-- 130 (395)
T cd03323 58 -LEAARSLVGGDVFGAYLAVLESVRVAFADR-D---AGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLG-- 130 (395)
T ss_pred -HHHhHHHhCCCcchhhHHHHHHHHHHHhcc-c---ccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhC--
Confidence 357899999988 58889999998443210 0 0111 1336799999999999999999999999999
Q ss_pred cCCCcceeeeeeEEeecCcccCCCCc--ccc--eeeeccCChhcHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCC
Q 043137 144 SGNKNLVLPVPAFNVINGGSHAGNKL--AMQ--EFMILPVGASCFKEAMKMGV-EVYHHLKAVIKKKYGQDATNVGDEGG 218 (445)
Q Consensus 144 ~G~~~~~vp~~~~~~~~gg~~~~~~~--~~~--e~~~~p~~~~~~~~a~~~~~-~~~~~~k~~lk~k~G~~~~~~~~~g~ 218 (445)
|..++++|+++.....++.+- ... +.. .+.-...+++..+++.+... ++|+++| .|.|.
T Consensus 131 -G~~r~~v~~ya~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~K----iKvG~---------- 194 (395)
T cd03323 131 -GGQRDSVPFLAYLFYKGDRHK-TDLPYPWFRDRWGEALTPEGVVRLARAAIDRYGFKSFK----LKGGV---------- 194 (395)
T ss_pred -CCccCeEEEEEEeeecccccc-ccccccccccccccCCCHHHHHHHHHHHHHhcCCcEEE----EecCC----------
Confidence 976778888654211111000 000 000 00000111222333333332 2555544 33331
Q ss_pred CCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCee
Q 043137 219 FAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIV 298 (445)
Q Consensus 219 ~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~ 298 (445)
.+.+.+.++++++|+++ +++.|++|+ |+.|+.++++++. +.+++ ++.
T Consensus 195 --~~~~~di~~v~avRea~------~~~~l~vDa-----------------------N~~w~~~~A~~~~-~~l~~-~l~ 241 (395)
T cd03323 195 --LPGEEEIEAVKALAEAF------PGARLRLDP-----------------------NGAWSLETAIRLA-KELEG-VLA 241 (395)
T ss_pred --CCHHHHHHHHHHHHHhC------CCCcEEEeC-----------------------CCCcCHHHHHHHH-HhcCc-CCC
Confidence 11123455565555543 579999999 3678999999884 56788 999
Q ss_pred eEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEE
Q 043137 299 SIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVM 378 (445)
Q Consensus 299 ~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~ 378 (445)
|||||++ |++++++|+++++ +||++||+. ++.++++++++.+++|++|+|++++||||+++|++++|+++|++++
T Consensus 242 ~iEeP~~--d~~~~~~L~~~~~--~PIa~dEs~-~~~~~~~~~i~~~avdil~~d~~~~GGit~~~kia~~A~~~gi~~~ 316 (395)
T cd03323 242 YLEDPCG--GREGMAEFRRATG--LPLATNMIV-TDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRVAQVCETWGLGWG 316 (395)
T ss_pred EEECCCC--CHHHHHHHHHhcC--CCEEcCCcc-cCHHHHHHHHHcCCCcEEeeccccccCHHHHHHHHHHHHHcCCeEE
Confidence 9999998 8999999999998 999999984 6799999999999999999999999999999999999999999986
Q ss_pred ecCCCCCChhhH--HHHHHhhh
Q 043137 379 ASHRSGETEDTF--IADLSVGL 398 (445)
Q Consensus 379 ~~~~~~et~~~~--~~~la~a~ 398 (445)
+ |...|+.++. ++|++.+.
T Consensus 317 ~-h~~~e~~i~~aa~~hlaaa~ 337 (395)
T cd03323 317 M-HSNNHLGISLAMMTHVAAAA 337 (395)
T ss_pred E-ecCcccHHHHHHHHHHHHhC
Confidence 5 5457777664 45665554
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=351.85 Aligned_cols=297 Identities=21% Similarity=0.277 Sum_probs=215.7
Q ss_pred eEEEEEEEEEEecCC-----C----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHH
Q 043137 3 ITITAVKARQIFDSR-----G----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNA 73 (445)
Q Consensus 3 mkI~~v~~~~v~~~~-----g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~ 73 (445)
|+|+.++........ + +..++|+|+||+|++|||+++...... | ...... .
T Consensus 4 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~v~i~~d~G~~G~GE~~~~~~~~-------------~----~~~~~~---~ 63 (372)
T COG4948 4 MKITVIPVAVPLSPPFVTSGGTVRFFTRVIVEITTDDGIVGWGEAVPGGRAR-------------Y----GEEAEA---V 63 (372)
T ss_pred eeEEEEEeeeecCCcccccccccccceEEEEEEEECCCceeeccccCccccc-------------c----hhhhhH---H
Confidence 566666655443211 1 236899999999999999765432100 1 011111 1
Q ss_pred hHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeee
Q 043137 74 IIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPV 153 (445)
Q Consensus 74 ~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~ 153 (445)
.+++.++|+||.+++.+|+.+.+... ++.+++..+|++|||+||||+.||.+|+|||+||| |..++.+++
T Consensus 64 ~~~~~l~g~d~~~i~~~~~~~~~~~~-------~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLG---g~~r~~v~~ 133 (372)
T COG4948 64 LLAPLLIGRDPFDIERIWQKLYRAGF-------ARRGGITMAAISAVDIALWDLAGKALGVPVYKLLG---GKVRDEVRA 133 (372)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcc-------cccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcC---CceeeeEEE
Confidence 68999999999999999999984211 11344556899999999999999999999999999 988777776
Q ss_pred eeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHH
Q 043137 154 PAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGV-EVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLEL 232 (445)
Q Consensus 154 ~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~-~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~ 232 (445)
+.+ ..++ +...+...++.+... ++|+.+| .|.|. .+.+.+.+++++
T Consensus 134 y~~--~~~~---------------~~~~e~~~~~~~~~~~~G~~~~K----lk~g~------------~~~~~d~~~v~a 180 (372)
T COG4948 134 YAS--GGGG---------------EDPEEMAAEAARALVELGFKALK----LKVGV------------GDGDEDLERVRA 180 (372)
T ss_pred EEe--cCCC---------------CCCHHHHHHHHHHHHhcCCceEE----ecCCC------------CchHHHHHHHHH
Confidence 443 2111 001122233333322 3565554 34331 111245677777
Q ss_pred HHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHH
Q 043137 233 LNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHY 312 (445)
Q Consensus 233 l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~ 312 (445)
+|+++ | +++.|++|+| +.||..+++++ .+.++++++.|||||++++|++++
T Consensus 181 vRe~~---g--~~~~l~iDan-----------------------~~~~~~~A~~~-~~~l~~~~l~~iEeP~~~~d~~~~ 231 (372)
T COG4948 181 LREAV---G--DDVRLMVDAN-----------------------GGWTLEEAIRL-ARALEEYGLEWIEEPLPPDDLEGL 231 (372)
T ss_pred HHHHh---C--CCceEEEeCC-----------------------CCcCHHHHHHH-HHHhcccCcceEECCCCccCHHHH
Confidence 77766 4 4899999993 67889999987 566889999999999999999999
Q ss_pred HHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHH
Q 043137 313 AKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIA 392 (445)
Q Consensus 313 ~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~ 392 (445)
++|++.++ +||++||+. .++++++++++.+++|++|||++++||||++++|+++|+.+++.+ .+|.. +..+..+
T Consensus 232 ~~l~~~~~--~PIa~gEs~-~~~~~~~~l~~~~a~div~~d~~~~GGite~~kia~~A~~~~~~v-~~h~~--~~i~~aa 305 (372)
T COG4948 232 RELRAATS--TPIAAGESV-YTRWDFRRLLEAGAVDIVQPDLARVGGITEALKIAALAEGFGVMV-GPHVE--GPISLAA 305 (372)
T ss_pred HHHHhcCC--CCEecCccc-ccHHHHHHHHHcCCCCeecCCccccCCHHHHHHHHHHHHHhCCce-eccCc--hHHHHHH
Confidence 99999998 999999985 669999999999999999999999999999999999999888885 55633 6665555
Q ss_pred HHHhh
Q 043137 393 DLSVG 397 (445)
Q Consensus 393 ~la~a 397 (445)
.++++
T Consensus 306 ~~hla 310 (372)
T COG4948 306 ALHLA 310 (372)
T ss_pred HHHHh
Confidence 44444
|
|
| >TIGR03247 glucar-dehydr glucarate dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=345.99 Aligned_cols=312 Identities=15% Similarity=0.134 Sum_probs=213.3
Q ss_pred EEEEEEEEEEe--cC-----C-----CCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHH
Q 043137 4 TITAVKARQIF--DS-----R-----GNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNV 71 (445)
Q Consensus 4 kI~~v~~~~v~--~~-----~-----g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i 71 (445)
.||++++.+|. |+ . ....++|+|+||+|++|||+++.+ ++. ...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~v~Td~Gi~G~GEa~~~--------------------~~~---~~~l 61 (441)
T TIGR03247 5 VVTEMRVIPVAGHDSMLLNLSGAHAPFFTRNIVILTDSSGNTGVGEVPGG--------------------EKI---RATL 61 (441)
T ss_pred EEeEEEEEeeccccchhccccccCCCcceEEEEEEEECCCCeEEEeCCCc--------------------HHH---HHHH
Confidence 56777777662 11 1 234689999999999999976421 112 2334
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccc------cchhhHHHHHHHHHHHHHHhcCCchhhhhccccC
Q 043137 72 NAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQK------LGANAILAVSLAVCKAGAHVKKIPLYKHIAELSG 145 (445)
Q Consensus 72 ~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~------~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G 145 (445)
+ .++|.|+|+||.+++.+|+.|++.+... . ..+.+. ....|+|||||||||+.||.+|+|||+||| |
T Consensus 62 ~-~lap~LiG~dp~~~e~i~~~m~~~~~~~-~--~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLG---g 134 (441)
T TIGR03247 62 E-DARPLVVGKPLGEYQNVLNDVRATFADR-D--AGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLG---E 134 (441)
T ss_pred H-HHHHHhcCCCHHHHHHHHHHHHHHhhcc-c--ccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhC---C
Confidence 4 6999999999999999999997322100 0 000111 124699999999999999999999999998 5
Q ss_pred C-CcceeeeeeEEeecCcc-------cCCC---Ccccceee--eccCChhcHHHHHHHHHH-HHHHHHHHHHhhcCCCCc
Q 043137 146 N-KNLVLPVPAFNVINGGS-------HAGN---KLAMQEFM--ILPVGASCFKEAMKMGVE-VYHHLKAVIKKKYGQDAT 211 (445)
Q Consensus 146 ~-~~~~vp~~~~~~~~gg~-------~~~~---~~~~~e~~--~~p~~~~~~~~a~~~~~~-~~~~~k~~lk~k~G~~~~ 211 (445)
. .++++|++.++. +.|. +.++ .-...... ....+++..+++.+...+ +|+++| .|+|.
T Consensus 135 g~~r~~vp~y~~~~-~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~a~K----iKvG~--- 206 (441)
T TIGR03247 135 GQQRDEVEMLGYLF-FIGDRKRTSLPYRSGPQDDDDWFRLRHEEALTPEAVVRLAEAAYDRYGFRDFK----LKGGV--- 206 (441)
T ss_pred CCccceEEEeeeee-eccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCCEEE----EecCC---
Confidence 3 467788765422 1110 0000 00000000 000122333444443332 565554 34331
Q ss_pred ccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHh
Q 043137 212 NVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSF 291 (445)
Q Consensus 212 ~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~ 291 (445)
++.+.+.++++++|+++ +++.|++|+ |+.||.++|+++. +.
T Consensus 207 ---------~~~~~Di~~v~avRea~------~d~~L~vDA-----------------------N~~wt~~~Ai~~~-~~ 247 (441)
T TIGR03247 207 ---------LRGEEEIEAVTALAKRF------PQARITLDP-----------------------NGAWSLDEAIALC-KD 247 (441)
T ss_pred ---------CChHHHHHHHHHHHHhC------CCCeEEEEC-----------------------CCCCCHHHHHHHH-HH
Confidence 11123455555554442 589999999 3678999999984 56
Q ss_pred hccCCeeeEECCCCcCC----HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHH
Q 043137 292 ISDYPIVSIEDPFDQDD----WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAV 367 (445)
Q Consensus 292 l~~~~i~~iEdP~~~~D----~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia 367 (445)
++++ +.|||||++++| ++++++|+++++ +||++||+. +++++++++++.+++|++|+|+. +||||++++++
T Consensus 248 Le~~-~~~iEePv~~~d~~~~~~~la~Lr~~~~--iPIa~dEs~-~~~~~~~~li~~~avdi~~~d~~-~gGIt~~~kIa 322 (441)
T TIGR03247 248 LKGV-LAYAEDPCGAEQGYSGREVMAEFRRATG--LPTATNMIA-TDWRQMGHALQLQAVDIPLADPH-FWTMQGSVRVA 322 (441)
T ss_pred hhhh-hceEeCCCCcccccchHHHHHHHHHhCC--CCEEcCCcc-CCHHHHHHHHHhCCCCEEeccCC-cchHHHHHHHH
Confidence 7889 999999999998 999999999998 999999984 67999999999999999999995 66899999999
Q ss_pred HHHHHcCCcEEecCCCCCChhh--HHHHHHhhh
Q 043137 368 RMSKQAGWGVMASHRSGETEDT--FIADLSVGL 398 (445)
Q Consensus 368 ~~A~~~g~~~~~~~~~~et~~~--~~~~la~a~ 398 (445)
++|+++|+.+ .+|...++.++ +.+||+.++
T Consensus 323 ~lA~a~Gi~v-~~h~~~~~~i~~aa~~hlaaa~ 354 (441)
T TIGR03247 323 QMCHDWGLTW-GSHSNNHFDISLAMFTHVAAAA 354 (441)
T ss_pred HHHHHcCCEE-EEeCCccCHHHHHHHHHHHHhC
Confidence 9999999996 56755566654 455666554
|
Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized. |
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=318.82 Aligned_cols=277 Identities=19% Similarity=0.250 Sum_probs=203.7
Q ss_pred ceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhc
Q 043137 20 PTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLD 99 (445)
Q Consensus 20 ~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~ 99 (445)
..++|+|+|+ |++|||++...+. |.+++...+...+++ ++|.|+|+|+. ++++++.|. ...
T Consensus 26 ~~~~v~v~t~-G~~G~GE~~~~~~---------------~~~~~~~~~~~~~~~-~~~~l~G~~~~-~~~~~~~l~-~~~ 86 (316)
T cd03319 26 ENVIVEIELD-GITGYGEAAPTPR---------------VTGETVESVLAALKS-VRPALIGGDPR-LEKLLEALQ-ELL 86 (316)
T ss_pred eEEEEEEEEC-CEEEEEeecCCCC---------------CCCCCHHHHHHHHHH-HHHHhcCCCch-HHHHHHHHH-Hhc
Confidence 4588999999 9999997543210 223344555555655 59999999999 999999997 321
Q ss_pred cCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeeccC
Q 043137 100 GTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPV 179 (445)
Q Consensus 100 ~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~ 179 (445)
. + ...|++|||+||||+.||.+|+|+|+||| |..+.++|+++. +.++ +.
T Consensus 87 --~-------~--~~~a~~aid~AlwDl~gk~~g~pv~~ll~---g~~~~~~~~~~~--~~~~-------~~-------- 135 (316)
T cd03319 87 --P-------G--NGAARAAVDIALWDLEAKLLGLPLYQLWG---GGAPRPLETDYT--ISID-------TP-------- 135 (316)
T ss_pred --c-------C--ChHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCCceeEEE--EeCC-------CH--------
Confidence 0 1 24599999999999999999999999976 666677776432 2211 11
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEecccccccc
Q 043137 180 GASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYG 259 (445)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~ 259 (445)
+...+.+.+...++|+.+| .|+|. +.+.+.+.++.+|+++ | ++.|++|+|
T Consensus 136 -~~~~~~~~~~~~~Gf~~iK----ik~g~-------------~~~~d~~~v~~lr~~~---g---~~~l~vD~n------ 185 (316)
T cd03319 136 -EAMAAAAKKAAKRGFPLLK----IKLGG-------------DLEDDIERIRAIREAA---P---DARLRVDAN------ 185 (316)
T ss_pred -HHHHHHHHHHHHcCCCEEE----EEeCC-------------ChhhHHHHHHHHHHhC---C---CCeEEEeCC------
Confidence 1112233333333454443 34331 1123345555554443 3 688999993
Q ss_pred CCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHH
Q 043137 260 SDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVE 339 (445)
Q Consensus 260 ~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~ 339 (445)
++|+.++++++ .+.++++++.|||||++++|++++++|+++++ +||++||+. .++++++
T Consensus 186 -----------------~~~~~~~A~~~-~~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~--ipIa~~E~~-~~~~~~~ 244 (316)
T cd03319 186 -----------------QGWTPEEAVEL-LRELAELGVELIEQPVPAGDDDGLAYLRDKSP--LPIMADESC-FSAADAA 244 (316)
T ss_pred -----------------CCcCHHHHHHH-HHHHHhcCCCEEECCCCCCCHHHHHHHHhcCC--CCEEEeCCC-CCHHHHH
Confidence 56888999988 45688999999999999999999999999998 999999984 6799999
Q ss_pred HHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHH--HHHHhhh
Q 043137 340 KAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFI--ADLSVGL 398 (445)
Q Consensus 340 ~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~--~~la~a~ 398 (445)
++++.+++|++|+|++++||+|++++++++|+++|++++++++ .|++++.+ +||+.++
T Consensus 245 ~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~-~~~~i~~~a~~hl~a~~ 304 (316)
T cd03319 245 RLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCM-VESSLSIAAAAHLAAAK 304 (316)
T ss_pred HHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECc-hhhHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999877654 48876654 4665553
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK15129 L-Ala-D/L-Glu epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=299.67 Aligned_cols=263 Identities=16% Similarity=0.183 Sum_probs=189.2
Q ss_pred CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHh
Q 043137 19 NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQL 98 (445)
Q Consensus 19 ~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l 98 (445)
+..++|+|+ ++|++|||++...+ .| +++...+...+. .+.|.|+ . ..+.+. +. .+
T Consensus 27 ~~~~lv~l~-~~G~~G~GE~~p~~---------------~~-~~~~~~~~~~l~-~~~~~l~-~-~~~~~~----~~-~~ 81 (321)
T PRK15129 27 ARVVVVELE-EEGIKGTGECTPYP---------------RY-GESDASVMAQIM-SVVPQLE-K-GLTREA----LQ-KL 81 (321)
T ss_pred eeEEEEEEE-eCCeEEEEeeCCcC---------------CC-CCCHHHHHHHHH-HHHHHHh-C-CCCHHH----HH-hh
Confidence 456899998 68999999654322 13 345566666664 6889987 2 222333 22 21
Q ss_pred ccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeecc
Q 043137 99 DGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILP 178 (445)
Q Consensus 99 ~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p 178 (445)
.+ ...|++||||||||+.||..|+|||+||| |..+.++|++. +++.+
T Consensus 82 ~~------------~~~a~~aid~AlwDl~gk~~~~pl~~llG---g~~~~~i~~~~--~~~~~---------------- 128 (321)
T PRK15129 82 LP------------AGAARNAVDCALWDLAARQQQQSLAQLIG---ITLPETVTTAQ--TVVIG---------------- 128 (321)
T ss_pred cc------------ChHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCceeEEE--EecCC----------------
Confidence 11 13599999999999999999999999999 87666677532 22111
Q ss_pred CChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccc
Q 043137 179 VGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFY 258 (445)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~ 258 (445)
.+++.++++.+...++|+++| .|+| + +.+.+.++.+|+++ +++.|++|+
T Consensus 129 ~~~~~~~~~~~~~~~G~~~~K----lKv~-------------~--~~d~~~v~avr~~~------~~~~l~vDa------ 177 (321)
T PRK15129 129 TPEQMANSASALWQAGAKLLK----VKLD-------------N--HLISERMVAIRSAV------PDATLIVDA------ 177 (321)
T ss_pred CHHHHHHHHHHHHHcCCCEEE----EeCC-------------C--chHHHHHHHHHHhC------CCCeEEEEC------
Confidence 011223444444444555544 3322 1 12356666665543 478999999
Q ss_pred cCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHH
Q 043137 259 GSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRV 338 (445)
Q Consensus 259 ~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~ 338 (445)
|++||.+++++++ +.++++++.|||||++++|++++++++ ++ +||+.||+. .+++++
T Consensus 178 -----------------N~~w~~~~A~~~~-~~l~~~~i~~iEqP~~~~~~~~l~~~~--~~--~pia~dEs~-~~~~d~ 234 (321)
T PRK15129 178 -----------------NESWRAEGLAARC-QLLADLGVAMLEQPLPAQDDAALENFI--HP--LPICADESC-HTRSSL 234 (321)
T ss_pred -----------------CCCCCHHHHHHHH-HHHHhcCceEEECCCCCCcHHHHHHhc--cC--CCEecCCCC-CCHHHH
Confidence 4678999999874 567899999999999999999988765 45 999999985 669999
Q ss_pred HHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHh
Q 043137 339 EKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSV 396 (445)
Q Consensus 339 ~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~ 396 (445)
+++. +++|++|+|++++|||+++++++++|+++|+++++++ +.|+..+..+.+++
T Consensus 235 ~~~~--~~~d~v~~k~~~~GGi~~a~~i~~~a~~~gi~~~~g~-~~es~i~~~a~~~l 289 (321)
T PRK15129 235 KALK--GRYEMVNIKLDKTGGLTEALALATEARAQGFALMLGC-MLCTSRAISAALPL 289 (321)
T ss_pred HHHH--hhCCEEEeCchhhCCHHHHHHHHHHHHHcCCcEEEec-chHHHHHHHHHHHH
Confidence 9984 7999999999999999999999999999999999988 46887765555555
|
|
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=282.34 Aligned_cols=209 Identities=20% Similarity=0.261 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHH
Q 043137 118 LAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHH 197 (445)
Q Consensus 118 sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~ 197 (445)
+|||+||||+.||.+|+|+|+||| | .++++|++. +++.+ +. ++..+++.+...++|+.
T Consensus 46 ~aid~Al~Dl~gk~~g~pv~~llG---~-~~~~i~~~~--~~~~~-------~~---------~~~~~~~~~~~~~G~~~ 103 (265)
T cd03315 46 AAVDMALWDLWGKRLGVPVYLLLG---G-YRDRVRVAH--MLGLG-------EP---------AEVAEEARRALEAGFRT 103 (265)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHcC---C-CCCceEEEE--EecCC-------CH---------HHHHHHHHHHHHCCCCE
Confidence 799999999999999999999999 7 456677643 22211 11 12233343333334544
Q ss_pred HHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCC
Q 043137 198 LKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQ 277 (445)
Q Consensus 198 ~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~ 277 (445)
+| .|.|. .+ +.+.+.++.+|+++ | +++.|++|+ |+
T Consensus 104 ~K----iKvg~-----------~~--~~d~~~v~~vr~~~---g--~~~~l~vDa-----------------------n~ 138 (265)
T cd03315 104 FK----LKVGR-----------DP--ARDVAVVAALREAV---G--DDAELRVDA-----------------------NR 138 (265)
T ss_pred EE----EecCC-----------CH--HHHHHHHHHHHHhc---C--CCCEEEEeC-----------------------CC
Confidence 43 33331 11 23455555555544 4 589999999 35
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCc
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 357 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~ 357 (445)
+||.++++++. +.++++++.|||||++++|++++++|+++++ +||++||+. .++++++++++.+++|++|+|++++
T Consensus 139 ~~~~~~a~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~--ipia~dE~~-~~~~~~~~~i~~~~~d~v~~k~~~~ 214 (265)
T cd03315 139 GWTPKQAIRAL-RALEDLGLDYVEQPLPADDLEGRAALARATD--TPIMADESA-FTPHDAFRELALGAADAVNIKTAKT 214 (265)
T ss_pred CcCHHHHHHHH-HHHHhcCCCEEECCCCcccHHHHHHHHhhCC--CCEEECCCC-CCHHHHHHHHHhCCCCEEEEecccc
Confidence 78899999884 5678899999999999999999999999998 999999985 6799999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHH--HHHhhh
Q 043137 358 GSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIA--DLSVGL 398 (445)
Q Consensus 358 GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~--~la~a~ 398 (445)
||||++++++++|+++|+++++++ +.|+.++.++ |+|.++
T Consensus 215 GGi~~~~~~~~~A~~~gi~~~~~~-~~~s~i~~~a~~hlaa~~ 256 (265)
T cd03315 215 GGLTKAQRVLAVAEALGLPVMVGS-MIESGLGTLANAHLAAAL 256 (265)
T ss_pred cCHHHHHHHHHHHHHcCCcEEecC-ccchHHHHHHHHHHHHhC
Confidence 999999999999999999998775 4588766544 555554
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=268.00 Aligned_cols=176 Identities=22% Similarity=0.314 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHH
Q 043137 118 LAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHH 197 (445)
Q Consensus 118 sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~ 197 (445)
+|||+||||+.||.+|+|||++|| |..+.++|++. .
T Consensus 45 ~aid~Al~Dl~gk~~~~pl~~llg---g~~~~~v~~~~-----------------------------~------------ 80 (229)
T cd00308 45 SGIDMALWDLAAKALGVPLAELLG---GGSRDRVPAYG-----------------------------S------------ 80 (229)
T ss_pred HHHHHHHHHHhHhHcCCcHHHHcC---CCCCCceeccH-----------------------------H------------
Confidence 899999999999999999999999 87666666521 0
Q ss_pred HHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCC
Q 043137 198 LKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQ 277 (445)
Q Consensus 198 ~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~ 277 (445)
.+.++.+|+++ | +++.|++|+| +
T Consensus 81 -----------------------------~~~i~~lr~~~---g--~~~~l~lDaN-----------------------~ 103 (229)
T cd00308 81 -----------------------------IERVRAVREAF---G--PDARLAVDAN-----------------------G 103 (229)
T ss_pred -----------------------------HHHHHHHHHHh---C--CCCeEEEECC-----------------------C
Confidence 12344455555 4 4899999993 5
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCc
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 357 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~ 357 (445)
.||.+++++++ +.++++++.|||||++++|++++++|+++++ +||++||+. ++++++.++++.+++|++|+|++++
T Consensus 104 ~~~~~~a~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~--~pIa~dEs~-~~~~~~~~~~~~~~~d~~~~k~~~~ 179 (229)
T cd00308 104 AWTPKEAIRLI-RALEKYGLAWIEEPCAPDDLEGYAALRRRTG--IPIAADESV-TTVDDALEALELGAVDILQIKPTRV 179 (229)
T ss_pred CCCHHHHHHHH-HHhhhcCCCeEECCCCccCHHHHHHHHhhCC--CCEEeCCCC-CCHHHHHHHHHcCCCCEEecCcccc
Confidence 78899999985 5578899999999999999999999999988 999999984 6799999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCcEEecCCCCCChhh--HHHHHHhhhc
Q 043137 358 GSVTESIEAVRMSKQAGWGVMASHRSGETEDT--FIADLSVGLA 399 (445)
Q Consensus 358 GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~--~~~~la~a~~ 399 (445)
||++++++++++|+++|++++++++ .++..+ +.+|++.+++
T Consensus 180 GGi~~~~~i~~~a~~~gi~~~~~~~-~~s~i~~~a~~hlaa~~~ 222 (229)
T cd00308 180 GGLTESRRAADLAEAFGIRVMVHGT-LESSIGTAAALHLAAALP 222 (229)
T ss_pred CCHHHHHHHHHHHHHcCCEEeecCC-CCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999987664 576655 4556655543
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. |
| >cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=273.35 Aligned_cols=203 Identities=20% Similarity=0.226 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHH
Q 043137 117 ILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYH 196 (445)
Q Consensus 117 ~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~ 196 (445)
++||||||||+.||..| | |..+.++|++ .+++.+ +. ...+++.+...++|+
T Consensus 49 ~aaid~AlwDl~gk~~g-------g---g~~~~~v~~~--~~~~~~-------~~----------~~~~~~~~~~~~Gf~ 99 (263)
T cd03320 49 AFGIESALANLEALLVG-------F---TRPRNRIPVN--ALLPAG-------DA----------AALGEAKAAYGGGYR 99 (263)
T ss_pred HHHHHHHHhcccccccC-------C---CCCccCccee--EEecCC-------CH----------HHHHHHHHHHhCCCC
Confidence 38999999999999999 7 7766677764 333221 00 112333333334555
Q ss_pred HHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCC
Q 043137 197 HLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGS 276 (445)
Q Consensus 197 ~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~ 276 (445)
.+| .|+|. .+.+.+.+.++.+|+++ | +++.|++|+|
T Consensus 100 ~~K----iKvg~------------~~~~~d~~~v~~vr~~~---g--~~~~l~vDaN----------------------- 135 (263)
T cd03320 100 TVK----LKVGA------------TSFEEDLARLRALREAL---P--ADAKLRLDAN----------------------- 135 (263)
T ss_pred EEE----EEECC------------CChHHHHHHHHHHHHHc---C--CCCeEEEeCC-----------------------
Confidence 544 34431 11123455555555543 4 4899999993
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCC
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~ 356 (445)
+.||.++++++ .+.++++++.|||||++++|++++++|+ ++ +||++||+. .+++++.++++.+++|++|+|+++
T Consensus 136 ~~w~~~~A~~~-~~~l~~~~i~~iEqP~~~~d~~~~~~l~--~~--~PIa~dEs~-~~~~~~~~~~~~~~~d~v~~k~~~ 209 (263)
T cd03320 136 GGWSLEEALAF-LEALAAGRIEYIEQPLPPDDLAELRRLA--AG--VPIALDESL-RRLDDPLALAAAGALGALVLKPAL 209 (263)
T ss_pred CCCCHHHHHHH-HHhhcccCCceEECCCChHHHHHHHHhh--cC--CCeeeCCcc-ccccCHHHHHhcCCCCEEEECchh
Confidence 57889999987 4567899999999999999999999999 66 999999985 568999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH--HHHHHhhhc
Q 043137 357 IGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF--IADLSVGLA 399 (445)
Q Consensus 357 ~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~--~~~la~a~~ 399 (445)
+||+|++++++++|+++|+++++++ +.|+.++. ++|++.++.
T Consensus 210 ~GGit~~~~i~~~a~~~gi~~~~~~-~~es~ig~aa~~hlaa~~~ 253 (263)
T cd03320 210 LGGPRALLELAEEARARGIPAVVSS-ALESSIGLGALAHLAAALP 253 (263)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEc-chhhHHHHHHHHHHHHhCC
Confidence 9999999999999999999998876 45776654 456666544
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=273.54 Aligned_cols=258 Identities=16% Similarity=0.169 Sum_probs=184.5
Q ss_pred CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHh
Q 043137 19 NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQL 98 (445)
Q Consensus 19 ~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l 98 (445)
+..++|+|+ ++|++|||++... +.|++++...+...+. .+.|.|+|+++.++. . .
T Consensus 21 ~~~~iv~l~-~~G~~G~GE~~p~---------------~~~~~et~~~~~~~l~-~l~~~l~~~~~~~~~------~-~- 75 (307)
T TIGR01927 21 REGLIVRLT-DEGRTGWGEIAPL---------------PGFGTETLAEALDFCR-ALIEEITRGDIEAID------D-Q- 75 (307)
T ss_pred eeEEEEEEE-ECCcEEEEEeecC---------------CCCCcccHHHHHHHHH-HHHHHhcccchhhcc------c-c-
Confidence 356999999 5699999965321 2366788888877777 488999998875332 1 0
Q ss_pred ccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeecc
Q 043137 99 DGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILP 178 (445)
Q Consensus 99 ~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p 178 (445)
...+++|||+||||+.||. +.|. ....|. ++ +..+ +
T Consensus 76 --------------~~~~~~aie~Al~Dl~~k~-~~~~-----------~~~~~~--~~-l~~~-------~-------- 111 (307)
T TIGR01927 76 --------------LPSVAFGFESALIELESGD-ELPP-----------ASNYYV--AL-LPAG-------D-------- 111 (307)
T ss_pred --------------CcHHHHHHHHHHHHHhcCC-CCCc-----------ccccce--ee-ccCC-------C--------
Confidence 0257999999999999997 2111 111222 22 1111 0
Q ss_pred CChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccc
Q 043137 179 VGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFY 258 (445)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~ 258 (445)
+++..+++.+ .++|+.+| .|+|. .+.+.+.+.++.+|+++ | +++.|++|+
T Consensus 112 -~~~~~~~~~~--~~Gf~~~K----iKvG~------------~~~~~d~~~v~~vr~~~---g--~~~~l~vDa------ 161 (307)
T TIGR01927 112 -PALLLLRSAK--AEGFRTFK----WKVGV------------GELAREGMLVNLLLEAL---P--DKAELRLDA------ 161 (307)
T ss_pred -HHHHHHHHHH--hCCCCEEE----EEeCC------------CChHHHHHHHHHHHHHc---C--CCCeEEEeC------
Confidence 1112223322 34555443 34331 11233455666555544 4 479999999
Q ss_pred cCCceeeecccCCCCCCCCccCHHHHHHHHHHhhcc---CCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCH
Q 043137 259 GSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISD---YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNP 335 (445)
Q Consensus 259 ~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~---~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~ 335 (445)
|+.||.++++++. +.+++ +++.|||||++.+ +++++|+++++ +||++||+. .++
T Consensus 162 -----------------N~~w~~~~A~~~~-~~l~~~~~~~i~~iEqP~~~~--~~~~~l~~~~~--~Pia~dEs~-~~~ 218 (307)
T TIGR01927 162 -----------------NGGLSPDEAQQFL-KALDPNLRGRIAFLEEPLPDA--DEMSAFSEATG--TAIALDESL-WEL 218 (307)
T ss_pred -----------------CCCCCHHHHHHHH-HhcccccCCCceEEeCCCCCH--HHHHHHHHhCC--CCEEeCCCc-CCh
Confidence 3678999999884 56787 8999999999866 89999999998 999999985 569
Q ss_pred HHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh--HHHHHHhhhc
Q 043137 336 KRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT--FIADLSVGLA 399 (445)
Q Consensus 336 ~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~--~~~~la~a~~ 399 (445)
++++++++.+++|++|+|++++||++++++++++|+++|++++++++ .||.++ +++||+.+++
T Consensus 219 ~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~-~es~i~~aa~~hlaa~~~ 283 (307)
T TIGR01927 219 PQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSV-FESSIALGQLARLAAKLS 283 (307)
T ss_pred HHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECc-cchHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999998874 588765 4567766654
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error. |
| >PRK02714 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-32 Score=266.95 Aligned_cols=258 Identities=13% Similarity=0.128 Sum_probs=177.8
Q ss_pred CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHh
Q 043137 19 NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQL 98 (445)
Q Consensus 19 ~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l 98 (445)
+..++|+|+|++|++|||++.+. +.|++++...+...++ .+.|.|.+++ ++. ... .
T Consensus 28 ~~~~iV~l~~~~G~~G~GE~~p~---------------p~~~~et~~~~~~~l~-~l~~~l~~~~---~~~---~~~-~- 83 (320)
T PRK02714 28 REGIILRLTDETGKIGWGEIAPL---------------PWFGSETLEEALAFCQ-QLPGEITPEQ---IFS---IPD-A- 83 (320)
T ss_pred eEEEEEEEEeCCCCeEEEEecCC---------------CCCCcccHHHHHHHHH-hccccCCHHH---HHh---hhh-c-
Confidence 46699999999999999965431 2366777777776665 4778775432 111 111 1
Q ss_pred ccCCCcccccccccchhhHHHHHHHHHH-HHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeec
Q 043137 99 DGTVNEWGWCKQKLGANAILAVSLAVCK-AGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMIL 177 (445)
Q Consensus 99 ~~~~~~~~~~~~~~~~~a~sAvdiAlwD-~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~ 177 (445)
...+++|+|+| || +.++. +.. .. .++|.+..+.
T Consensus 84 --------------~~~~~~aie~A-~d~~~~~~---~~~---------~~--~~~~~~~~i~----------------- 117 (320)
T PRK02714 84 --------------LPACQFGFESA-LENESGSR---SNV---------TL--NPLSYSALLP----------------- 117 (320)
T ss_pred --------------CCHHHHHHHHH-HHHHhccc---ccC---------Cc--CCCceeeecC-----------------
Confidence 12589999999 66 43332 111 11 1233332221
Q ss_pred cCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEecccccc
Q 043137 178 PVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEF 257 (445)
Q Consensus 178 p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~ 257 (445)
.+++..+++.+...++|+.+| .|+|. .+.+.+.++++.+|+++ | +++.|++|+
T Consensus 118 -~~~~~~~~a~~~~~~G~~~~K----vKvG~------------~~~~~d~~~v~air~~~---g--~~~~l~vDa----- 170 (320)
T PRK02714 118 -AGEAALQQWQTLWQQGYRTFK----WKIGV------------DPLEQELKIFEQLLERL---P--AGAKLRLDA----- 170 (320)
T ss_pred -CCHHHHHHHHHHHHcCCCEEE----EEECC------------CChHHHHHHHHHHHHhc---C--CCCEEEEEC-----
Confidence 112234455444445565544 44441 11122345555555443 5 589999999
Q ss_pred ccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhcc---CCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccC
Q 043137 258 YGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISD---YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTN 334 (445)
Q Consensus 258 ~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~---~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~ 334 (445)
|++||.+++++++ +.+++ +++.|||||++++|++++++|+++++ +||++||+. .+
T Consensus 171 ------------------N~~w~~~~A~~~~-~~l~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~--~Pia~DEs~-~~ 228 (320)
T PRK02714 171 ------------------NGGLSLEEAKRWL-QLCDRRLSGKIEFIEQPLPPDQFDEMLQLSQDYQ--TPIALDESV-AN 228 (320)
T ss_pred ------------------CCCCCHHHHHHHH-HHHhhccCCCccEEECCCCcccHHHHHHHHHhCC--CCEEECCcc-CC
Confidence 3678999999874 45676 79999999999999999999999998 999999985 67
Q ss_pred HHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH--HHHHHhhhc
Q 043137 335 PKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF--IADLSVGLA 399 (445)
Q Consensus 335 ~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~--~~~la~a~~ 399 (445)
+++++++++.+++|++|+|++++||+++++ ++|+++|++++++++ .||.++. .+||+.++.
T Consensus 229 ~~d~~~~~~~~a~d~v~ik~~k~GGi~~~~---~~a~~~gi~~~~~~~-~es~ig~aa~~hlaa~~~ 291 (320)
T PRK02714 229 LAQLQQCYQQGWRGIFVIKPAIAGSPSRLR---QFCQQHPLDAVFSSV-FETAIGRKAALALAAELS 291 (320)
T ss_pred HHHHHHHHHcCCCCEEEEcchhcCCHHHHH---HHHHHhCCCEEEEec-hhhHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999654 679999999999875 5887664 456666654
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=310.53 Aligned_cols=303 Identities=15% Similarity=0.110 Sum_probs=200.2
Q ss_pred ceEEEEEEEEEEec--------CCC------CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCc-cHHH
Q 043137 2 AITITAVKARQIFD--------SRG------NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGK-GVSK 66 (445)
Q Consensus 2 ~mkI~~v~~~~v~~--------~~g------~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~-~~~~ 66 (445)
.|||++|+.+.+.. +.| +..++|+|+||+|++|||++...+..+ |.. ...+ ....
T Consensus 930 ~~~I~~i~~~~~~lpl~~p~~~a~g~~~~~~r~~~lV~l~~ddG~~G~GEa~pl~~~~--et~--------~~~~~~l~~ 999 (1655)
T PLN02980 930 LCKISGMEYSLYRIQLCAPPTSASVDFSQFHREGFILSLSLEDGSVGFGEVAPLEIHE--EDL--------LDVEEQLRF 999 (1655)
T ss_pred cceEeEEEEEEEEeeccCCcEeeccccccceeeEEEEEEEECCCCEEEEecCCCCCCc--ccc--------ccHHHHHHH
Confidence 48999999987742 222 456899999999999999654322211 110 0000 0111
Q ss_pred HHHHH----HHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhcc
Q 043137 67 AVSNV----NAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAE 142 (445)
Q Consensus 67 a~~~i----~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~ 142 (445)
....+ .+.++|.|+|+++ +.+++.+. ... +.....|++||||||||+.||.+|+|||+|||
T Consensus 1000 ~~~~l~~~~~~~l~p~l~G~~~---~~~~~~l~-~~~----------~~~~psa~~ald~ALwDl~gk~~g~Pl~~LLG- 1064 (1655)
T PLN02980 1000 LLHVIKGAKISFMLPLLKGSFS---SWIWSELG-IPP----------SSIFPSVRCGLEMAILNAIAVRHGSSLLNILD- 1064 (1655)
T ss_pred HHHHHhhhhhhhhhHhhcCcch---HHHHHHhh-ccc----------cccchHHHHHHHHHHHHHHHHHcCCcHHHHhC-
Confidence 11112 1356899999954 44444443 111 12236799999999999999999999999999
Q ss_pred ccCCCcceee-------eeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCC
Q 043137 143 LSGNKNLVLP-------VPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGD 215 (445)
Q Consensus 143 ~~G~~~~~vp-------~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~ 215 (445)
|. +.+.+ +|++..+ ++. ..+++..+++.+...++|+.+| .|+|.
T Consensus 1065 --g~-~~~~~~~~~~~~v~v~~~~-~~~--------------~~~~~~~~~a~~~~~~Gf~~~K----lKvG~------- 1115 (1655)
T PLN02980 1065 --PY-QKDENGSEQSHSVQICALL-DSN--------------GSPLEVAYVARKLVEEGFSAIK----LKVGR------- 1115 (1655)
T ss_pred --CC-CCCcceeccccceeeeecc-CCC--------------CCHHHHHHHHHHHHHcCCCEEE----EecCC-------
Confidence 73 22121 1222221 010 0112223444444444555443 34331
Q ss_pred CCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccC
Q 043137 216 EGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDY 295 (445)
Q Consensus 216 ~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~ 295 (445)
..+.+.+.++++.+|+++ | +++.|++|+ |++||.++|++++ +.++++
T Consensus 1116 ----~~~~~~D~~~i~alRe~~---G--~~~~LrlDA-----------------------N~~ws~~~A~~~~-~~L~~~ 1162 (1655)
T PLN02980 1116 ----RVSPIQDAAVIQEVRKAV---G--YQIELRADA-----------------------NRNWTYEEAIEFG-SLVKSC 1162 (1655)
T ss_pred ----CCCHHHHHHHHHHHHHHc---C--CCCeEEEEC-----------------------CCCCCHHHHHHHH-HHHhhc
Confidence 011233345555555544 5 589999999 3679999999985 567889
Q ss_pred CeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHH-----HHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHH
Q 043137 296 PIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPK-----RVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMS 370 (445)
Q Consensus 296 ~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~-----~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A 370 (445)
++.|||||++ +.+++++|+++++ +||++||+.. +++ .++++++.++. .+++|++++||++++++++++|
T Consensus 1163 ~i~~iEqPl~--~~~~l~~l~~~~~--iPIA~DEs~~-~~~~~~~~~~~~~i~~~~~-~i~iK~~~~GGit~~~~ia~~A 1236 (1655)
T PLN02980 1163 NLKYIEEPVQ--DEDDLIKFCEETG--LPVALDETID-KFEECPLRMLTKYTHPGIV-AVVIKPSVVGGFENAALIARWA 1236 (1655)
T ss_pred CCCEEECCCC--CHHHHHHHHHhCC--CCEEeCCCcC-CcccchHHHHHHHHHCCCe-EEEeChhhhCCHHHHHHHHHHH
Confidence 9999999997 5789999999998 9999999854 344 46777777655 7899999999999999999999
Q ss_pred HHcCCcEEecCCCCCChhhH--HHHHHhhh
Q 043137 371 KQAGWGVMASHRSGETEDTF--IADLSVGL 398 (445)
Q Consensus 371 ~~~g~~~~~~~~~~et~~~~--~~~la~a~ 398 (445)
+++|+++++++ +.|+.++. .+|||..+
T Consensus 1237 ~~~gi~~~~~s-~~es~Ig~aA~~hlaa~~ 1265 (1655)
T PLN02980 1237 QQHGKMAVISA-AYESGLGLSAYIQFASYL 1265 (1655)
T ss_pred HHcCCeEEecC-cccCHHHHHHHHHHHHhc
Confidence 99999998876 46887654 55665553
|
|
| >PRK05105 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=249.32 Aligned_cols=252 Identities=16% Similarity=0.188 Sum_probs=177.7
Q ss_pred CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHh
Q 043137 19 NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQL 98 (445)
Q Consensus 19 ~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l 98 (445)
+..++|+|+ |+|++|||++... +.|++++..++...+.+.+.|.+. .++.+ +. .
T Consensus 27 ~~~viV~l~-d~G~~G~GE~~p~---------------~~~~~et~~~~~~~l~~~~~~~~~-~~~~~-------~~-~- 80 (322)
T PRK05105 27 RDGLVVQLR-EGEREGWGEIAPL---------------PGFSQETLEEAQEALLAWLNNWLA-GDCDD-------EL-S- 80 (322)
T ss_pred eeeEEEEEE-ECCcEEEEEeCCC---------------CCCCccCHHHHHHHHHHHHHHhhc-Ccccc-------cc-c-
Confidence 467999996 8999999965432 136788888888888887877654 44433 11 1
Q ss_pred ccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeecc
Q 043137 99 DGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILP 178 (445)
Q Consensus 99 ~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p 178 (445)
....+++++++|+||+.||..+.|++.. .++ +.+ +.
T Consensus 81 -------------~~~~a~~~i~~Al~dl~gk~~~~~~~~~-----------~~l------~~~-------~~------- 116 (322)
T PRK05105 81 -------------QYPSVAFGLSCALAELAGTLPQAANYRT-----------APL------CYG-------DP------- 116 (322)
T ss_pred -------------cCcHHHHHHHHHHHHhcCCCCCCCCcce-----------eee------ecC-------CH-------
Confidence 0135889999999999999888887521 111 101 01
Q ss_pred CChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccc
Q 043137 179 VGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFY 258 (445)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~ 258 (445)
++..+++.+. ++|+.+| .|+|. .+.+.+.+.++.+|+++ +++.|++|+
T Consensus 117 --~~~~~~a~~~--~Gf~~~K----vKvG~------------~~~~~d~~~i~~vr~~~------~~~~l~vDa------ 164 (322)
T PRK05105 117 --DELILKLADM--PGEKVAK----VKVGL------------YEAVRDGMLVNLLLEAI------PDLKLRLDA------ 164 (322)
T ss_pred --HHHHHHHHHc--CCCCEEE----EEECC------------CCHHHHHHHHHHHHHhC------CCCeEEEEC------
Confidence 1223344332 4565554 44441 11222345555444432 578999999
Q ss_pred cCCceeeecccCCCCCCCCccCHHHHHHHHHHhhcc---CCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCH
Q 043137 259 GSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISD---YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNP 335 (445)
Q Consensus 259 ~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~---~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~ 335 (445)
|+.||.+++++++ +.+++ +++.|||||++. .+++++|+++++ +||+.||+. .++
T Consensus 165 -----------------N~~w~~~~A~~~~-~~l~~~~~~~i~~iEqP~~~--~~~~~~l~~~~~--~PIa~DEs~-~~~ 221 (322)
T PRK05105 165 -----------------NRGWTLEKAQQFA-KYVPPDYRHRIAFLEEPCKT--PDDSRAFARATG--IAIAWDESL-REP 221 (322)
T ss_pred -----------------CCCCCHHHHHHHH-HHhhhhcCCCccEEECCCCC--HHHHHHHHHhCC--CCEEECCCC-Cch
Confidence 3678999999985 45777 999999999964 568999999998 999999986 455
Q ss_pred HHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH--HHHHHhhh
Q 043137 336 KRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF--IADLSVGL 398 (445)
Q Consensus 336 ~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~--~~~la~a~ 398 (445)
+ ++..+ .+++|++|||++++||++++++++++|+++|+++++++ +.|+.++. .+||+.++
T Consensus 222 ~-~~~~~-~~~~d~i~ik~~k~GGi~~a~~i~~~A~~~gi~~~~~~-~~es~i~~aa~~hla~~~ 283 (322)
T PRK05105 222 D-FQFEA-EPGVRAIVIKPTLTGSLEKCQELIEQAHALGLRAVISS-SIESSLGLTQLARLAAWL 283 (322)
T ss_pred h-hhhhh-cCCCCEEEECccccCCHHHHHHHHHHHHHcCCcEEEEC-chhHHHHHHHHHHHHHhc
Confidence 4 44444 77899999999999999999999999999999998886 46887664 44665554
|
|
| >PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=210.74 Aligned_cols=131 Identities=69% Similarity=0.967 Sum_probs=113.9
Q ss_pred EEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCC-CCCCCccHHHHHHHHHHhHhhhhcCC
Q 043137 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGK 82 (445)
Q Consensus 4 kI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~-~~y~~~~~~~a~~~i~~~l~p~LiG~ 82 (445)
||++|++|+|+||+|+|||+|+|+|++|.+|++++|+|.|+|.+|+.+++|++ ..|+|+++..+++.|++.|+|.|+|+
T Consensus 1 ~I~~v~~r~IlDsrG~PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~Av~~vn~~i~~~L~g~ 80 (132)
T PF03952_consen 1 TITKVKAREILDSRGNPTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSKAVENVNEIIAPALIGL 80 (132)
T ss_dssp BEEEEEEEEEE-TTS-EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHHHHHHHHHTHHHHHTTS
T ss_pred CeEEEEEEEEEcCCCCceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccchhhhhHHHHHHHHHHhc
Confidence 69999999999999999999999999999999999999999999999999998 44999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhh
Q 043137 83 DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHI 140 (445)
Q Consensus 83 d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lL 140 (445)
+|.||++||+.|. .+++++| .+.+|.|++.|+|+|++.+.|+..++|||+||
T Consensus 81 ~~~dQ~~iD~~L~-~lDgT~n-----k~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 81 DPTDQEEIDQILI-ELDGTPN-----KSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp BTT-HHHHHHHHH-HHHTSTT-----STTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred chhhHHHhCccce-eccCChh-----hhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 9999999999999 9999998 68899999999999999999999999999986
|
In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A .... |
| >PRK02901 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=187.23 Aligned_cols=138 Identities=22% Similarity=0.329 Sum_probs=113.4
Q ss_pred cChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhh-ccCCeeeEEC
Q 043137 224 QENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFI-SDYPIVSIED 302 (445)
Q Consensus 224 ~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l-~~~~i~~iEd 302 (445)
+.+.+.++.+|+++ | +++.|++|+| +.||.+++++++. .+ +++++.||||
T Consensus 118 ~~Di~rv~avRe~l---G--pd~~LrvDAN-----------------------~~ws~~~Ai~~~~-~L~e~~~l~~iEq 168 (327)
T PRK02901 118 ADDVARVNAVRDAL---G--PDGRVRVDAN-----------------------GGWSVDEAVAAAR-ALDADGPLEYVEQ 168 (327)
T ss_pred HHHHHHHHHHHHhc---C--CCCEEEEECC-----------------------CCCCHHHHHHHHH-HhhhccCceEEec
Confidence 34455666555554 5 5899999993 5789999999854 56 6799999999
Q ss_pred CCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC
Q 043137 303 PFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 303 P~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~ 382 (445)
|++ +++++++|+++++ +||++||+. .+.+++.++++.+++|++++|++++|||+++++ +|+++|+++++++
T Consensus 169 P~~--~~~~la~Lr~~~~--vPIA~DEs~-~~~~d~~~l~~~~a~dvi~ik~~~~GGit~~lk---iA~~~gi~v~v~s- 239 (327)
T PRK02901 169 PCA--TVEELAELRRRVG--VPIAADESI-RRAEDPLRVARAGAADVAVLKVAPLGGVRAALD---IAEQIGLPVVVSS- 239 (327)
T ss_pred CCC--CHHHHHHHHHhCC--CCEEeCCCC-CCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHH---HHHHcCCcEEEeC-
Confidence 997 4899999999998 999999985 669999999999999999999999999999988 5789999998875
Q ss_pred CCCChhhHHH--HHHhhhc
Q 043137 383 SGETEDTFIA--DLSVGLA 399 (445)
Q Consensus 383 ~~et~~~~~~--~la~a~~ 399 (445)
+.||+.+.++ |++.++.
T Consensus 240 ~~es~ig~aA~lhlaaalp 258 (327)
T PRK02901 240 ALDTSVGIAAGLALAAALP 258 (327)
T ss_pred CcccHHHHHHHHHHHHhCC
Confidence 5688766544 5555543
|
|
| >COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-17 Score=152.05 Aligned_cols=303 Identities=18% Similarity=0.231 Sum_probs=211.1
Q ss_pred HHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhcccc
Q 043137 65 SKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELS 144 (445)
Q Consensus 65 ~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~ 144 (445)
+....+++..+.|.|+|+|....-.-...+. .+-. ...+..+...++|.||.|+.+.+.+.--.+.+...+
T Consensus 87 ~~~~~~~~~~v~p~LvgrDv~~~ldnA~vfe-~l~d--------~~~LhtAvrYGvSQALl~Aaa~a~~tt~tevvcde~ 157 (410)
T COG3799 87 EHFIPFLNDHVKPLLVGRDVDAFLDNARVFE-KLID--------GNLLHTAVRYGVSQALLDAAALATGTTKTEVVCDEW 157 (410)
T ss_pred hhhHHHHhhhhhhhhhCccHHhhcchhHHhH-hhcc--------CCcchHHHHhhHHHHHHHHHHHhhccchheeehhhh
Confidence 4556778999999999998765443333333 3311 134567899999999999999999999999999888
Q ss_pred CCCcceeeeeeEEeecCcc-cCC-CCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCC
Q 043137 145 GNKNLVLPVPAFNVINGGS-HAG-NKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPN 222 (445)
Q Consensus 145 G~~~~~vp~~~~~~~~gg~-~~~-~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~ 222 (445)
+.++..-|+|+|.. +|.. +.. .++-.+.+-++|++- +.. . .++| ++
T Consensus 158 ~lp~~te~vP~fgQ-SGd~R~~~vdkMiLK~vdVLPHgL----------------iNs-v-e~~G-------------~d 205 (410)
T COG3799 158 QLPRVTESVPLFGQ-SGDDRYIAVDKMILKGVDVLPHGL----------------INS-V-EELG-------------FD 205 (410)
T ss_pred CCCCcccccccccc-CcchhhhhHHHHHHhhcCccchhh----------------hhh-H-HHhC-------------Cc
Confidence 88766667777743 1110 000 011112222222211 000 0 1122 22
Q ss_pred ccChHHHHHHHHHHHHHhCCCC-CeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCC--eee
Q 043137 223 IQENKEGLELLNTAIAKAGYTG-KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYP--IVS 299 (445)
Q Consensus 223 ~~~~~~~l~~l~~av~~~g~~~-~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~--i~~ 299 (445)
-.+..+.++++.+.++..|-.+ .-.|.+|+ | + .... --++++....+|++++-++.+ ..+
T Consensus 206 G~~l~Eyv~Wls~R~~~~g~~gYhP~lH~DV-----Y--G-~iGe---------~fg~dp~r~a~yi~~l~~~a~~~pL~ 268 (410)
T COG3799 206 GEKLREYVRWLSDRILSKGTSGYHPTLHIDV-----Y--G-TIGE---------IFGMDPLRCAQYIASLEKEAQGLPLY 268 (410)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCccEEEee-----h--h-hhHH---------HhCCCHHHHHHHHHHHHhhCCCCcee
Confidence 2456788888888777655322 45677888 2 1 0011 124677777888776544433 669
Q ss_pred EECCCCc----CCHHHHHHHHHHh---CCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHH
Q 043137 300 IEDPFDQ----DDWEHYAKLTSEV---GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQ 372 (445)
Q Consensus 300 iEdP~~~----~D~~~~~~L~~~~---~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~ 372 (445)
||-|++. .+++.++++++.+ +..+.|+.||+ |++.+|+..+.+.++++.||||...+|+|-+.-+.+.+|..
T Consensus 269 IEgP~DaGs~~aQI~~~a~i~~~L~~~Gs~v~IVaDEw-Cnt~~Di~~F~dA~a~h~VQiKTPDvGsi~~~~rAvlyC~~ 347 (410)
T COG3799 269 IEGPVDAGSKPAQIRLLAAITKELTRLGSGVKIVADEW-CNTYQDIVDFTDAAACHMVQIKTPDVGSIHNIVRAVLYCNS 347 (410)
T ss_pred eeccccCCCCHHHHHHHHHHHHHHhhcCCcceEeehhh-cccHHHHHHHHhhccccEEEecCCCcchHHHHHHHHhhhcc
Confidence 9999974 5677888888754 33589999998 58899999999999999999999999999999999999999
Q ss_pred cCCcEEecCCCCCChhh--HHHHHHhhhcCCc--cccCCCCCchhHHHHHHHHHHHHH
Q 043137 373 AGWGVMASHRSGETEDT--FIADLSVGLATGQ--IKTGAPCRSERLAKYNQLLRIEEE 426 (445)
Q Consensus 373 ~g~~~~~~~~~~et~~~--~~~~la~a~~~~~--~~~G~~~~~e~~~k~n~ll~i~~~ 426 (445)
+.+...+|+++.||..+ +++|+++|..+-+ .|+|.-.+..--.+.||+-|.-.-
T Consensus 348 ~~~~AYvGGtCnETdvSAr~cvHValAt~a~~mLaKPGMGfDeg~~iV~NEmnRtlA~ 405 (410)
T COG3799 348 HSMEAYVGGTCNETDVSARTCVHVALATRAMRMLAKPGMGFDEGLDIVFNEMNRTLAL 405 (410)
T ss_pred CccceeecccccccchhhhhhhhhhhhhcHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999876 6788888877655 357776677778889988776543
|
|
| >PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=143.93 Aligned_cols=186 Identities=23% Similarity=0.346 Sum_probs=132.4
Q ss_pred cChHHHHHHHHHHHHHhCCCC-CeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhcc-CC-eeeE
Q 043137 224 QENKEGLELLNTAIAKAGYTG-KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISD-YP-IVSI 300 (445)
Q Consensus 224 ~~~~~~l~~l~~av~~~g~~~-~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~-~~-i~~i 300 (445)
+...+.+++++..+++.|.++ .-.|.+|+... ....|. .+.+.+.+|+.++.+. .| -..|
T Consensus 47 e~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVYGt--------iG~~f~---------~d~~~~adYl~~l~~aA~P~~L~i 109 (248)
T PF07476_consen 47 EKLLEYVKWLKDRIRELGDEDYRPVLHIDVYGT--------IGLAFD---------NDPDRMADYLAELEEAAAPFKLRI 109 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSSTT---EEEEE-TTH--------HHHHTT---------T-HHHHHHHHHHHHHHHTTS-EEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccEEEEccch--------HHHHhC---------CCHHHHHHHHHHHHHhcCCCeeee
Confidence 556788999999999877543 56788899321 111121 2567888888776543 34 4589
Q ss_pred ECCCCcC----CHHHHHHHHHHh---CCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHc
Q 043137 301 EDPFDQD----DWEHYAKLTSEV---GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQA 373 (445)
Q Consensus 301 EdP~~~~----D~~~~~~L~~~~---~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~ 373 (445)
|.|+... +++.+++|++.+ +.++.|++||+ |++++|++.+.+.+++|+||||....|||.++.+.+-+|+.+
T Consensus 110 EgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEW-CNT~eDI~~F~da~A~dmVQIKtPDLGgi~ntieAvlyCk~~ 188 (248)
T PF07476_consen 110 EGPMDAGSREAQIEALAELREELDRRGINVEIVADEW-CNTLEDIREFADAKAADMVQIKTPDLGGINNTIEAVLYCKEH 188 (248)
T ss_dssp E-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT---SHHHHHHHHHTT-SSEEEE-GGGGSSTHHHHHHHHHHHHT
T ss_pred eCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehh-cCCHHHHHHHHhcCCcCEEEecCCCccchhhHHHHHHHHHhc
Confidence 9999875 456888888765 33588999998 688999999999999999999999999999999999999999
Q ss_pred CCcEEecCCCCCChhh--HHHHHHhhhcCCcc--ccCCCCCchhHHHHHHHHHHHHHh
Q 043137 374 GWGVMASHRSGETEDT--FIADLSVGLATGQI--KTGAPCRSERLAKYNQLLRIEEEL 427 (445)
Q Consensus 374 g~~~~~~~~~~et~~~--~~~~la~a~~~~~~--~~G~~~~~e~~~k~n~ll~i~~~l 427 (445)
|+.+.+|++++||..| .++|+|+|+++.++ |+|.-.+..-+..+||+.|+-..+
T Consensus 189 gvgaY~GGtCNETd~SArv~~hvalAt~p~q~LaKPGMG~DEG~mIV~NEM~R~lal~ 246 (248)
T PF07476_consen 189 GVGAYLGGTCNETDRSARVCVHVALATRPDQMLAKPGMGVDEGYMIVTNEMNRTLALL 246 (248)
T ss_dssp T-EEEE---TTS-HHHHHHHHHHHHHCT-SEEE--SSSSSHHHHHHHHHHHHHHHHHH
T ss_pred CCceeecccccccchhHHHHHHHHHhcCHHHHhcCCCCCccchHHHHHHHHHHHHHHh
Confidence 9999999999999877 67899999988776 477766777999999999987643
|
3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A. |
| >PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5 | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-17 Score=137.54 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=81.4
Q ss_pred EEEEEEEE--EEecCCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhh
Q 043137 4 TITAVKAR--QIFDSRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGP 77 (445)
Q Consensus 4 kI~~v~~~--~v~~~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p 77 (445)
+|..+... ++..+.+ +..++|+|+|++|++|+|++.... + +.......+.+.+.|
T Consensus 5 ~v~~v~~~l~Pf~~a~~t~~~~~~v~V~l~t~~G~~G~Ge~~~~~----------------~---~~~~~~~~~~~~l~~ 65 (117)
T PF02746_consen 5 RVRHVPLPLKPFKTARGTVSEREFVLVRLETDDGVVGWGEAFPSP----------------G---TAETVASALEDYLAP 65 (117)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSEEEEEEEESSS----------------S---SHHHHHHHHHHTHHH
T ss_pred EEEEeccCcCCEEeeCEEEEEeEEEEEEEEECCCCEEEEEeeCCc----------------c---hhHHHHHHHHHHHHH
Confidence 44444332 4444443 456999999999999999765421 1 134455667888999
Q ss_pred hhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhc
Q 043137 78 ALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIA 141 (445)
Q Consensus 78 ~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG 141 (445)
.|+|+++.+++.+++.+.+... . ...|++|||+||||+.||.+|+|||+|||
T Consensus 66 ~l~g~~~~~~~~~~~~~~~~~~----------~--~~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 66 LLIGQDPDDIEDIWQELYRLIK----------G--NPAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp HHTTSBTTGHHHHHHHHHHHTS----------S--HHHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred HHhcCCHHHHHHHHHHHHHhcc----------c--hHHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 9999999999999998883221 1 36799999999999999999999999997
|
1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A .... |
| >PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5 | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-12 Score=97.16 Aligned_cols=66 Identities=26% Similarity=0.396 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCH
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDW 309 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~ 309 (445)
++.+|+++ | +++.|++|+| +.||.++++++. +.++++ .|||||++++|+
T Consensus 2 i~avr~~~---g--~~~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~--~~iEeP~~~~d~ 50 (67)
T PF01188_consen 2 IRAVREAV---G--PDIDLMVDAN-----------------------QAWTLEEAIRLA-RALEDY--EWIEEPLPPDDL 50 (67)
T ss_dssp HHHHHHHH---S--TTSEEEEE-T-----------------------TBBSHHHHHHHH-HHHGGG--SEEESSSSTTSH
T ss_pred HHHHHHhh---C--CCCeEEEECC-----------------------CCCCHHHHHHHH-HHcChh--heeecCCCCCCH
Confidence 44455554 6 6899999993 678999999985 567875 999999999999
Q ss_pred HHHHHHHHHhCCCceEEeC
Q 043137 310 EHYAKLTSEVGEKVQIVGD 328 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gd 328 (445)
+++++|+++++ +||++|
T Consensus 51 ~~~~~l~~~~~--~pia~d 67 (67)
T PF01188_consen 51 DGLAELRQQTS--VPIAAD 67 (67)
T ss_dssp HHHHHHHHHCS--SEEEES
T ss_pred HHHHHHHHhCC--CCEEeC
Confidence 99999999998 999886
|
1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C .... |
| >PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-10 Score=96.85 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=58.1
Q ss_pred CcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCC
Q 043137 328 DDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATG 401 (445)
Q Consensus 328 de~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~ 401 (445)
||+. .++++++++++.+++|++|+|++++||||++++++++|+++|+++++++ + ++..+.++.++++...+
T Consensus 1 gE~~-~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~-~-~~~i~~aa~~hlaaa~~ 71 (111)
T PF13378_consen 1 GESL-FSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHS-M-ESGIGLAASLHLAAALP 71 (111)
T ss_dssp STTS-SSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBS-S-SSHHHHHHHHHHHHTST
T ss_pred CCCC-CCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecC-C-CCcHHHHHHHHHHHhcC
Confidence 5664 6799999999999999999999999999999999999999999986655 5 88766555555554444
|
... |
| >COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.9e-08 Score=90.62 Aligned_cols=132 Identities=21% Similarity=0.260 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhc-cC--CeeeEECCC
Q 043137 228 EGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFIS-DY--PIVSIEDPF 304 (445)
Q Consensus 228 ~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~-~~--~i~~iEdP~ 304 (445)
-.+..+.+++ +|++|++|+| ..||+..+..| ++-+. +| .|.|+|||+
T Consensus 145 mivnllLEai------PDL~LRLDAN-----------------------RaWtp~Ka~~F-AkyV~p~~R~RIaFLEEPC 194 (321)
T COG1441 145 MIVNLLLEAI------PDLHLRLDAN-----------------------RAWTPLKAQQF-AKYVNPDYRSRIAFLEEPC 194 (321)
T ss_pred hHHHHHHHhC------ccceeeeccc-----------------------ccCChHHHHHH-HHhcCHHHHHHHHHHhccc
Confidence 3455566776 7999999993 46777777666 44444 23 499999999
Q ss_pred CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCC
Q 043137 305 DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSG 384 (445)
Q Consensus 305 ~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~ 384 (445)
.. ...-+.+...++ +.|+-||+. .. .+|.. -....+..|.||++-+|.+....+.+.-|++.|+..++++ +.
T Consensus 195 kt--~aeSr~Fa~eTg--IAIAWDEs~-re-adF~~-e~e~gv~avVIKPTL~GSl~r~~eli~qAh~lGl~AVISS-Si 266 (321)
T COG1441 195 KT--RAESRAFARETG--IAIAWDESL-RE-ADFAF-EAEPGVRAVVIKPTLTGSLQRVRELVQQAHALGLTAVISS-SI 266 (321)
T ss_pred CC--hHHHHHHHHhcC--eeEeecchh-cc-ccccc-ccCCCceEEEecccchhhHHHHHHHHHHHHhcCceeEeec-hh
Confidence 74 346677888888 999999985 32 33432 2356788999999999999999999999999999998887 56
Q ss_pred CCh--hhHHHHHHhh
Q 043137 385 ETE--DTFIADLSVG 397 (445)
Q Consensus 385 et~--~~~~~~la~a 397 (445)
|+. .+..+.+|.-
T Consensus 267 ESSLGLtQLARiA~~ 281 (321)
T COG1441 267 ESSLGLTQLARIAAW 281 (321)
T ss_pred hhhcCHHHHHHHHHH
Confidence 764 4456666554
|
|
| >PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4 | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.9e-05 Score=68.20 Aligned_cols=106 Identities=21% Similarity=0.271 Sum_probs=70.2
Q ss_pred eEEEEEEeCCCceEEE-eccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhc
Q 043137 21 TVEVDVTTSDGHVARA-AVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLD 99 (445)
Q Consensus 21 ~v~V~v~td~G~~G~g-~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~ 99 (445)
++.|.+.+++|-+.+| |+.. -..|.+.. +|-|. ...-+..|++.++|.|+|+|..++....+.+. .+.
T Consensus 52 sisV~l~L~dG~va~GDCaaV-QYSGagGR------DPLF~---a~~~ip~ie~~v~p~L~g~d~~~Fr~~a~~~d-~~~ 120 (159)
T PF05034_consen 52 SISVMLVLEDGQVAYGDCAAV-QYSGAGGR------DPLFL---AEDFIPVIEKEVAPRLVGRDLSSFRENAEKFD-ELV 120 (159)
T ss_dssp EEEEEEEETTS-EEEEEE----TTTTSTTS-------S------HHHHHHHHHHHTHHHHTT-B-S-CHHHHHHHH-H-E
T ss_pred EEEEEEEeCCCCEEEeeehhe-eecccCCC------CCccc---HHHHHHHHHhhccHHHcCCcHHHHHHHHHHHH-hcc
Confidence 5889999999998888 4322 11122221 11232 35567789999999999999999999988888 542
Q ss_pred cCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccC
Q 043137 100 GTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSG 145 (445)
Q Consensus 100 ~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G 145 (445)
+ ...+..+...+|+.||.|+.|++.+.-..+.+..++|
T Consensus 121 ---~-----g~rlhtAiRYGvsQALL~A~A~a~~~tmaeVi~~Ey~ 158 (159)
T PF05034_consen 121 ---D-----GKRLHTAIRYGVSQALLDAAAKAQRTTMAEVIAEEYG 158 (159)
T ss_dssp ---T-----TEE--HHHHHHHHHHHHHHHHHHCTS-HHHHHHHHCT
T ss_pred ---c-----CCcchhHHHHhHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 1 2456788999999999999999999988888775444
|
3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.7e-05 Score=74.51 Aligned_cols=95 Identities=13% Similarity=0.222 Sum_probs=73.2
Q ss_pred HHHHH-hCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEE-----------C
Q 043137 235 TAIAK-AGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIE-----------D 302 (445)
Q Consensus 235 ~av~~-~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iE-----------d 302 (445)
+++|+ +| +++.|+++.+..+.. +.+++.++++++ .+.++++++.||| .
T Consensus 212 ~aIR~~vG--~d~~v~vri~~~~~~-----------------~~g~~~~e~~~i-a~~Le~~gvd~iev~~g~~~~~~~~ 271 (336)
T cd02932 212 DAVRAVWP--EDKPLFVRISATDWV-----------------EGGWDLEDSVEL-AKALKELGVDLIDVSSGGNSPAQKI 271 (336)
T ss_pred HHHHHHcC--CCceEEEEEcccccC-----------------CCCCCHHHHHHH-HHHHHHcCCCEEEECCCCCCccccc
Confidence 34443 45 588999998643211 356788899887 5567889999999 4
Q ss_pred CC-CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEe
Q 043137 303 PF-DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 303 P~-~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
|+ +..+.+..++|++.++ +||++.+. +++++++.++++.+.+|+|.+
T Consensus 272 ~~~~~~~~~~~~~ir~~~~--iPVi~~G~-i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 272 PVGPGYQVPFAERIRQEAG--IPVIAVGL-ITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred CCCccccHHHHHHHHhhCC--CCEEEeCC-CCCHHHHHHHHHcCCCCeehh
Confidence 77 4556788899999998 99988887 467999999999999999874
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=97.80 E-value=9.5e-05 Score=74.30 Aligned_cols=95 Identities=13% Similarity=0.183 Sum_probs=70.5
Q ss_pred HHHHH-hCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEE-------CCCCc
Q 043137 235 TAIAK-AGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIE-------DPFDQ 306 (445)
Q Consensus 235 ~av~~-~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iE-------dP~~~ 306 (445)
++||+ +| +++.|++++++.++. ..+++.++++++ .+.+++.++.||| +|...
T Consensus 207 ~aIR~avG--~d~~v~vris~~~~~-----------------~~g~~~eea~~i-a~~Le~~Gvd~iev~~g~~~~~~~~ 266 (338)
T cd04733 207 DAIRAAVG--PGFPVGIKLNSADFQ-----------------RGGFTEEDALEV-VEALEEAGVDLVELSGGTYESPAMA 266 (338)
T ss_pred HHHHHHcC--CCCeEEEEEcHHHcC-----------------CCCCCHHHHHHH-HHHHHHcCCCEEEecCCCCCCcccc
Confidence 34443 45 589999999653221 135788899887 5668889999999 55532
Q ss_pred ---C---------CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEe
Q 043137 307 ---D---------DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 307 ---~---------D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
+ .++..++|++.++ +||++++. +++++++.++++.+.+|+|.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~ik~~v~--iPVi~~G~-i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 267 GAKKESTIAREAYFLEFAEKIRKVTK--TPLMVTGG-FRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred ccccCCccccchhhHHHHHHHHHHcC--CCEEEeCC-CCCHHHHHHHHHcCCCCeeee
Confidence 1 1355678999988 99988887 467999999999999999875
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0051 Score=61.39 Aligned_cols=95 Identities=14% Similarity=0.265 Sum_probs=70.0
Q ss_pred HHHHH-hCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEE-------CCCC-
Q 043137 235 TAIAK-AGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIE-------DPFD- 305 (445)
Q Consensus 235 ~av~~-~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iE-------dP~~- 305 (445)
+++|+ +| +++.|+++.+..... +.+++.++++++ .+.++++++.||+ +|..
T Consensus 199 ~avr~~~g--~d~~i~vris~~~~~-----------------~~g~~~~e~~~l-a~~l~~~G~d~i~vs~g~~~~~~~~ 258 (327)
T cd02803 199 AAVREAVG--PDFPVGVRLSADDFV-----------------PGGLTLEEAIEI-AKALEEAGVDALHVSGGSYESPPPI 258 (327)
T ss_pred HHHHHHcC--CCceEEEEechhccC-----------------CCCCCHHHHHHH-HHHHHHcCCCEEEeCCCCCcccccc
Confidence 34443 44 478899988543211 134678888877 5667889999994 6543
Q ss_pred --------cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEe
Q 043137 306 --------QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 306 --------~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
..+++..+.+++.++ +||++.+. +++++++.++++.+.+|+|.+
T Consensus 259 ~~~~~~~~~~~~~~~~~ir~~~~--iPVi~~Gg-i~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 259 IPPPYVPEGYFLELAEKIKKAVK--IPVIAVGG-IRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred cCCCCCCcchhHHHHHHHHHHCC--CCEEEeCC-CCCHHHHHHHHHCCCCCeeee
Confidence 456678889999987 99988776 467999999999999999875
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00081 Score=68.00 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=55.4
Q ss_pred CccCHHHHHHHHHHhhccCCee-------eEECCCCcC--------CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHH
Q 043137 277 QKISGDALKDLYKSFISDYPIV-------SIEDPFDQD--------DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKA 341 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~-------~iEdP~~~~--------D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~ 341 (445)
.+++.++++++ .+.++++++. |.|+|.+.. ..+..+++++.++ +||++.+. +++++++.++
T Consensus 219 ~g~~~~e~~~i-~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~--iPVi~~G~-i~~~~~a~~~ 294 (353)
T cd02930 219 GGSTWEEVVAL-AKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVD--IPVIASNR-INTPEVAERL 294 (353)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCC--CCEEEcCC-CCCHHHHHHH
Confidence 45788888887 5667888743 457777543 2445678999988 99988876 4679999999
Q ss_pred HhcCCCCEEEe
Q 043137 342 IKEKTCNALLL 352 (445)
Q Consensus 342 i~~~a~d~v~i 352 (445)
++.+.+|+|++
T Consensus 295 i~~g~~D~V~~ 305 (353)
T cd02930 295 LADGDADMVSM 305 (353)
T ss_pred HHCCCCChhHh
Confidence 99999999874
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.024 Score=53.40 Aligned_cols=67 Identities=10% Similarity=0.283 Sum_probs=54.8
Q ss_pred HHHHHHHHhhccCCeeeE-------EC-CCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 283 ALKDLYKSFISDYPIVSI-------ED-PFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 283 ~ai~~~~~~l~~~~i~~i-------Ed-P~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
++.++ .+.+++.++.+| ++ +..+-+++..+++++..+ +||+++.. +++++++.++++.+.+|.|++=
T Consensus 139 ~~~~~-~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~--ipvi~~Gg-i~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 139 ETLEL-AKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVS--IPVIANGD-IFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred HHHHH-HHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCC--CeEEEeCC-CCCHHHHHHHHHhcCCCEEEEc
Confidence 56655 456778888888 66 776778999999999887 99988886 5779999999999889999874
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=92.25 E-value=2 Score=43.33 Aligned_cols=72 Identities=11% Similarity=0.147 Sum_probs=49.4
Q ss_pred ccCHHHHHHHHHHhhccCC-eeeEEC-------C---------CC-c--CCHHHHHHHHHHhCCCceEEeCcccccCHHH
Q 043137 278 KISGDALKDLYKSFISDYP-IVSIED-------P---------FD-Q--DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKR 337 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~-i~~iEd-------P---------~~-~--~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~ 337 (445)
++|.++.+++ .+++++.+ +.||+= + .. . .+++..+++++.++ +||++.-. ++++++
T Consensus 224 G~~~~e~~~~-~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~--ipvi~~G~-i~~~~~ 299 (343)
T cd04734 224 GLSPDEALEI-AARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVD--LPVFHAGR-IRDPAE 299 (343)
T ss_pred CCCHHHHHHH-HHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcC--CCEEeeCC-CCCHHH
Confidence 5678888877 56677776 676651 1 11 1 13455577888887 88744433 356999
Q ss_pred HHHHHhcCCCCEEEec
Q 043137 338 VEKAIKEKTCNALLLK 353 (445)
Q Consensus 338 ~~~~i~~~a~d~v~ik 353 (445)
+.++++.+.+|.|.+-
T Consensus 300 ~~~~l~~~~~D~V~~g 315 (343)
T cd04734 300 AEQALAAGHADMVGMT 315 (343)
T ss_pred HHHHHHcCCCCeeeec
Confidence 9999999999998753
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.77 Score=45.21 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCC
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSG 384 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~ 384 (445)
++-+.+.+++++++ +|+++|=.+ ++.-+...++. .+|-+.|.+..+|--....+++..|+.+|+++-+|-+.|
T Consensus 61 e~A~A~~~Ik~~~~--vPLVaDiHf--~~rla~~~~~~-g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~G 133 (361)
T COG0821 61 EAAEALKEIKQRLN--VPLVADIHF--DYRLALEAAEC-GVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAG 133 (361)
T ss_pred HHHHHHHHHHHhCC--CCEEEEeec--cHHHHHHhhhc-CcceEEECCcccCcHHHHHHHHHHHHHcCCCEEEecccC
Confidence 35567788888887 999999653 34444444444 499999999999988889999999999999998888654
|
|
| >PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.74 Score=45.86 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCccc-HHHHHHHHHHHHHcCCcEEecCCCCC
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS-VTESIEAVRMSKQAGWGVMASHRSGE 385 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GG-it~a~~ia~~A~~~g~~~~~~~~~~e 385 (445)
+-+.+.+++++++ +|+++|=.+ ++.-....+ ...+|.+.|.+..+|. -....+++..|+++|+++-+|-++|.
T Consensus 68 ~a~al~~I~~~~~--iPlvADIHF--d~~lAl~a~-~~G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GS 141 (360)
T PRK00366 68 AAAALPEIKKQLP--VPLVADIHF--DYRLALAAA-EAGADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGS 141 (360)
T ss_pred HHHhHHHHHHcCC--CCEEEecCC--CHHHHHHHH-HhCCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCcc
Confidence 4556777888887 999999653 444444444 3458999999999999 77899999999999999999887653
|
|
| >TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.72 Score=45.61 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCC
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGE 385 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~e 385 (445)
+-+.+.++++.++ +|+++|=.+ . .. +.-..-...+|-+.|.+..+|.-....++++.|+.+|+++-+|-++|.
T Consensus 60 ~A~al~~I~~~~~--iPlVADIHF-d-~~-lAl~a~~~g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GS 132 (346)
T TIGR00612 60 SAAAFEAIKEGTN--VPLVADIHF-D-YR-LAALAMAKGVAKVRINPGNIGFRERVRDVVEKARDHGKAMRIGVNHGS 132 (346)
T ss_pred HHHhHHHHHhCCC--CCEEEeeCC-C-cH-HHHHHHHhccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCC
Confidence 3345566666777 999999653 2 22 222233567999999999999999999999999999999999887653
|
Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=90.32 E-value=2 Score=39.88 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHhhccCCeeeEECCCCcCC-HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcc
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDPFDQDD-WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 358 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP~~~~D-~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G 358 (445)
+.+++++. .+.+-+.++..+|=++...+ ++..++++++.+ ++.|-++- +.+++++++.++.++-=++.|-.+
T Consensus 18 ~~e~a~~~-~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~-~~~vGAGT--Vl~~~~a~~a~~aGA~FivsP~~~--- 90 (204)
T TIGR01182 18 DVDDALPL-AKALIEGGLRVLEVTLRTPVALDAIRLLRKEVP-DALIGAGT--VLNPEQLRQAVDAGAQFIVSPGLT--- 90 (204)
T ss_pred CHHHHHHH-HHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCC-CCEEEEEe--CCCHHHHHHHHHcCCCEEECCCCC---
Confidence 56788776 55667789999999997554 466888988876 47775553 457999999999887655545443
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCccc
Q 043137 359 SVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIK 404 (445)
Q Consensus 359 Git~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~ 404 (445)
.++++.|+++|+.++.|.+. -|+ +.-|...++..+|
T Consensus 91 -----~~v~~~~~~~~i~~iPG~~T-ptE----i~~A~~~Ga~~vK 126 (204)
T TIGR01182 91 -----PELAKHAQDHGIPIIPGVAT-PSE----IMLALELGITALK 126 (204)
T ss_pred -----HHHHHHHHHcCCcEECCCCC-HHH----HHHHHHCCCCEEE
Confidence 37888999999998766632 222 2223334566666
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=87.81 E-value=4.2 Score=40.98 Aligned_cols=94 Identities=11% Similarity=0.189 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCC-------------cccHHHHHHHHHHHHHcCC
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ-------------IGSVTESIEAVRMSKQAGW 375 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~-------------~GGit~a~~ia~~A~~~g~ 375 (445)
.+..++|++..+ ++||+++.. -+.+.++.+++.+ +|+|.+=+.- ..-+|...++++.|+.+++
T Consensus 137 ~~~ik~ik~~~~-~~~viaGNV--~T~e~a~~L~~aG-ad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v 212 (352)
T PF00478_consen 137 IDMIKKIKKKFP-DVPVIAGNV--VTYEGAKDLIDAG-ADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGV 212 (352)
T ss_dssp HHHHHHHHHHST-TSEEEEEEE---SHHHHHHHHHTT--SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHhCC-CceEEeccc--CCHHHHHHHHHcC-CCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccC
Confidence 456788888887 699988864 3589999999887 8998876541 2468999999999999999
Q ss_pred cEEecCCCCCChhhHHHHHHhhhcCCccccCCCC
Q 043137 376 GVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 376 ~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+++.......++| +--|+|+++.++.+|++.
T Consensus 213 ~iIADGGi~~sGD---i~KAla~GAd~VMlG~ll 243 (352)
T PF00478_consen 213 PIIADGGIRTSGD---IVKALAAGADAVMLGSLL 243 (352)
T ss_dssp EEEEESS-SSHHH---HHHHHHTT-SEEEESTTT
T ss_pred ceeecCCcCcccc---eeeeeeecccceeechhh
Confidence 9866553222222 223566678999999865
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=87.58 E-value=6.8 Score=39.73 Aligned_cols=72 Identities=11% Similarity=0.154 Sum_probs=46.3
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEE-------CC-CCcCCHHHHHHHHHHhCCCceEEeCccc-----------------c
Q 043137 278 KISGDALKDLYKSFISDYPIVSIE-------DP-FDQDDWEHYAKLTSEVGEKVQIVGDDLL-----------------V 332 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iE-------dP-~~~~D~~~~~~L~~~~~~~vpI~gde~~-----------------~ 332 (445)
+.+.++++++ .+.+++.++.+|+ +| +...+..--+++++.++ +||++--.. .
T Consensus 231 g~~~~e~~~~-~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~--~pv~~~G~i~~~~~~~~~~~~~~~~~~ 307 (361)
T cd04747 231 ADTPDELEAL-LAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTG--LPTITVGSVGLDGDFIGAFAGDEGASP 307 (361)
T ss_pred CCCHHHHHHH-HHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcC--CCEEEECCccccccccccccccccccc
Confidence 4678888876 4557777766663 23 22223444456777777 777433221 2
Q ss_pred cCHHHHHHHHhcCCCCEEEe
Q 043137 333 TNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 333 ~~~~~~~~~i~~~a~d~v~i 352 (445)
+++++..++++.+.+|.|.+
T Consensus 308 ~~~~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 308 ASLDRLLERLERGEFDLVAV 327 (361)
T ss_pred CCHHHHHHHHHCCCCCeehh
Confidence 47899999999999999764
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli | Back alignment and domain information |
|---|
Probab=87.40 E-value=1.1 Score=44.59 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=52.0
Q ss_pred CHHHHHHHHHH-----hCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCc--------cc-HHHHHHHHHHHHHc
Q 043137 308 DWEHYAKLTSE-----VGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI--------GS-VTESIEAVRMSKQA 373 (445)
Q Consensus 308 D~~~~~~L~~~-----~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~--------GG-it~a~~ia~~A~~~ 373 (445)
+-+.+.+++++ ++ +|+++|=.+ ++.-....++. +|-+.|.+..+ |. -....+++..|+++
T Consensus 57 ~a~al~~I~~~l~~~g~~--iPlVADIHF--d~~lAl~a~~~--v~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~ 130 (359)
T PF04551_consen 57 AAEALKEIKKRLRALGSP--IPLVADIHF--DYRLALEAIEA--VDKIRINPGNIVDEFQEELGSIREKVKEVVEAAKER 130 (359)
T ss_dssp HHHHHHHHHHHHHCTT-S--S-EEEEEST--TCHHHHHHHHC---SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCC--CCeeeecCC--CHHHHHHHHHH--hCeEEECCCcccccccccccchHHHHHHHHHHHHHC
Confidence 34455666666 66 999999653 45656666665 99999999999 77 78889999999999
Q ss_pred CCcEEecCCCCC
Q 043137 374 GWGVMASHRSGE 385 (445)
Q Consensus 374 g~~~~~~~~~~e 385 (445)
|+++-+|-++|.
T Consensus 131 ~ipIRIGvN~GS 142 (359)
T PF04551_consen 131 GIPIRIGVNSGS 142 (359)
T ss_dssp T-EEEEEEEGGG
T ss_pred CCCEEEeccccc
Confidence 999988876553
|
It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.94 E-value=8.9 Score=40.70 Aligned_cols=118 Identities=8% Similarity=0.089 Sum_probs=74.8
Q ss_pred HHHHHHHHhhccCCeeeEECCCCcCC----HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEecc----
Q 043137 283 ALKDLYKSFISDYPIVSIEDPFDQDD----WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV---- 354 (445)
Q Consensus 283 ~ai~~~~~~l~~~~i~~iEdP~~~~D----~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~---- 354 (445)
+..++...+ -+.++..||=+..+.. ++..+++++..+.+++|.++.. .++++++.+++.++ |++.+-.
T Consensus 242 ~~~~ra~~L-v~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV--~t~e~a~~li~aGA-d~I~vg~g~Gs 317 (502)
T PRK07107 242 DYAERVPAL-VEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNV--VDREGFRYLAEAGA-DFVKVGIGGGS 317 (502)
T ss_pred hHHHHHHHH-HHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccc--cCHHHHHHHHHcCC-CEEEECCCCCc
Confidence 455554444 4467777776666665 7889999999875688988875 35899999998776 8875522
Q ss_pred ---CC----cc--cHHHHHHHHHHHH----HcC--CcEEecCCCCCChhhHHHHH--HhhhcCCccccCCCC
Q 043137 355 ---NQ----IG--SVTESIEAVRMSK----QAG--WGVMASHRSGETEDTFIADL--SVGLATGQIKTGAPC 409 (445)
Q Consensus 355 ---~~----~G--Git~a~~ia~~A~----~~g--~~~~~~~~~~et~~~~~~~l--a~a~~~~~~~~G~~~ 409 (445)
+| +| -+|...++++.++ ++| ++++..+..-. ..|+ |+|+++..+.+|.+.
T Consensus 318 ~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~-----~gdi~KAla~GA~~vm~G~~~ 384 (502)
T PRK07107 318 ICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVY-----DYHMTLALAMGADFIMLGRYF 384 (502)
T ss_pred CcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCc-----hhHHHHHHHcCCCeeeeChhh
Confidence 12 22 3455555555443 347 77655442222 2333 455678888888855
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.25 E-value=9 Score=38.88 Aligned_cols=70 Identities=13% Similarity=0.051 Sum_probs=45.8
Q ss_pred ccCHHH-HHHHHHHhhccCCeeeEECCCC------cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEE
Q 043137 278 KISGDA-LKDLYKSFISDYPIVSIEDPFD------QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNAL 350 (445)
Q Consensus 278 ~~t~~~-ai~~~~~~l~~~~i~~iEdP~~------~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v 350 (445)
+++.++ ++++ .+++++.++.+|+=-.+ +-...-.+++++.++ +||++.-. . +++...+.++.+.+|+|
T Consensus 244 G~~~~e~~~~~-~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~--~pv~~~G~-~-~~~~ae~~i~~G~~D~V 318 (362)
T PRK10605 244 GPNEEADALYL-IEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFH--GVIIGAGA-Y-TAEKAETLIGKGLIDAV 318 (362)
T ss_pred CCCHHHHHHHH-HHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCC--CCEEEeCC-C-CHHHHHHHHHcCCCCEE
Confidence 467777 6776 55677777777642211 001223367777887 78744433 3 59999999999999998
Q ss_pred Ee
Q 043137 351 LL 352 (445)
Q Consensus 351 ~i 352 (445)
.+
T Consensus 319 ~~ 320 (362)
T PRK10605 319 AF 320 (362)
T ss_pred EE
Confidence 74
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=86.20 E-value=23 Score=34.22 Aligned_cols=129 Identities=16% Similarity=0.232 Sum_probs=82.7
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEEC--CC-CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCC---CCEE
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIED--PF-DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKT---CNAL 350 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEd--P~-~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a---~d~v 350 (445)
..++.++.+++ .+.+++.++..||= |. .++|++..+.+++..+ ++.+.+= ...+..+++..++.+. +|.+
T Consensus 15 ~~~~~~~k~~i-~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~-~~~~~~l--~r~~~~~v~~a~~~~~~~~~~~i 90 (268)
T cd07940 15 VSLTPEEKLEI-ARQLDELGVDVIEAGFPAASPGDFEAVKRIAREVL-NAEICGL--ARAVKKDIDAAAEALKPAKVDRI 90 (268)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCC-CCEEEEE--ccCCHhhHHHHHHhCCCCCCCEE
Confidence 35788888877 55688899999996 54 4677888888887654 3555322 1124678888777653 7877
Q ss_pred EeccCC----------c---ccHHHHHHHHHHHHHcCCcEEecCCC-CCChhhHHHH---HHhhhcCCccccCCCC
Q 043137 351 LLKVNQ----------I---GSVTESIEAVRMSKQAGWGVMASHRS-GETEDTFIAD---LSVGLATGQIKTGAPC 409 (445)
Q Consensus 351 ~ik~~~----------~---GGit~a~~ia~~A~~~g~~~~~~~~~-~et~~~~~~~---la~a~~~~~~~~G~~~ 409 (445)
.+-.+- + --+..+.++++.|++.|+.+.++... ..+.....+. -+...++..+.+.+-.
T Consensus 91 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~ 166 (268)
T cd07940 91 HTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTV 166 (268)
T ss_pred EEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 774321 1 12455778889999999998887632 2233444333 3455566666655543
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=85.83 E-value=4.6 Score=40.53 Aligned_cols=71 Identities=6% Similarity=0.134 Sum_probs=48.7
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEEC--------CC---CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCC
Q 043137 278 KISGDALKDLYKSFISDYPIVSIED--------PF---DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKT 346 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEd--------P~---~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a 346 (445)
+++.++++++ .+.+++.++.||+= |. +..+++..+++++.++ +||++--. +++++++.++++.+.
T Consensus 223 G~~~~e~~~i-~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~--ipVi~~G~-i~~~~~a~~~l~~g~ 298 (337)
T PRK13523 223 GLTVQDYVQY-AKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHAN--IATGAVGL-ITSGAQAEEILQNNR 298 (337)
T ss_pred CCCHHHHHHH-HHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcC--CcEEEeCC-CCCHHHHHHHHHcCC
Confidence 5678888876 55677777766631 11 1124555677888877 88744333 356999999999999
Q ss_pred CCEEEe
Q 043137 347 CNALLL 352 (445)
Q Consensus 347 ~d~v~i 352 (445)
+|.|.+
T Consensus 299 ~D~V~~ 304 (337)
T PRK13523 299 ADLIFI 304 (337)
T ss_pred CChHHh
Confidence 998764
|
|
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=85.82 E-value=6.4 Score=40.09 Aligned_cols=42 Identities=12% Similarity=0.096 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
++.-+++++.++ +||++--. ++++++..++++.+.+|.|.+-
T Consensus 278 ~~~~~~ik~~~~--~pvi~~G~-i~~~~~~~~~l~~g~~D~V~~g 319 (370)
T cd02929 278 EPYIKFVKQVTS--KPVVGVGR-FTSPDKMVEVVKSGILDLIGAA 319 (370)
T ss_pred HHHHHHHHHHCC--CCEEEeCC-CCCHHHHHHHHHcCCCCeeeec
Confidence 344467788887 88744332 3579999999999999998754
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=84.82 E-value=5.5 Score=40.23 Aligned_cols=72 Identities=8% Similarity=0.135 Sum_probs=45.1
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEE-------CCC---CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCC
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIE-------DPF---DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKT 346 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iE-------dP~---~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a 346 (445)
.+.+.++.+++ .+.+++.++.||+ .+. +......++.+++....++||++--. +++++++.++++.+
T Consensus 230 ~g~~~ee~~~i-~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Gg-i~t~e~ae~~l~~g- 306 (353)
T cd04735 230 PGIRMEDTLAL-VDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGS-INTPDDALEALETG- 306 (353)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECC-CCCHHHHHHHHHcC-
Confidence 35677888876 5567888888875 111 11134455667776622377744332 35689999998874
Q ss_pred CCEEE
Q 043137 347 CNALL 351 (445)
Q Consensus 347 ~d~v~ 351 (445)
+|.|.
T Consensus 307 aD~V~ 311 (353)
T cd04735 307 ADLVA 311 (353)
T ss_pred CChHH
Confidence 77654
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=84.18 E-value=11 Score=35.12 Aligned_cols=117 Identities=13% Similarity=0.107 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCC---
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ--- 356 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~--- 356 (445)
+.+++++....+.+-.+..+||=|+..+-++..++|++. + +++.+.-. -++.+....++.+ +++|.|-++|
T Consensus 62 ~~e~~i~~a~~l~~~~~~~~iKIP~T~~gl~ai~~L~~~-g--i~v~~T~V--~s~~Qa~~Aa~AG-A~yvsP~vgR~~~ 135 (211)
T cd00956 62 DAEGMVAEARKLASLGGNVVVKIPVTEDGLKAIKKLSEE-G--IKTNVTAI--FSAAQALLAAKAG-ATYVSPFVGRIDD 135 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCcHhHHHHHHHHHHc-C--CceeeEEe--cCHHHHHHHHHcC-CCEEEEecChHhh
Confidence 345666654444343477899999987656666666655 4 88755543 3588888888877 5889999988
Q ss_pred --cccHHHHHHHHHHHHHcCCc--EEecCCCCCChhhHHHHHHhhhcCCccccC
Q 043137 357 --IGSVTESIEAVRMSKQAGWG--VMASHRSGETEDTFIADLSVGLATGQIKTG 406 (445)
Q Consensus 357 --~GGit~a~~ia~~A~~~g~~--~~~~~~~~et~~~~~~~la~a~~~~~~~~G 406 (445)
.-|+.-..++.++++.+|++ ++.++- -+. .-+.+ +...|+..++++
T Consensus 136 ~g~dg~~~i~~i~~~~~~~~~~tkil~As~--r~~-~ei~~-a~~~Gad~vTv~ 185 (211)
T cd00956 136 LGGDGMELIREIRTIFDNYGFDTKILAASI--RNP-QHVIE-AALAGADAITLP 185 (211)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCceEEeccc--CCH-HHHHH-HHHcCCCEEEeC
Confidence 36788899999999999866 333331 111 11222 334578888774
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=84.04 E-value=17 Score=34.87 Aligned_cols=122 Identities=13% Similarity=0.125 Sum_probs=69.3
Q ss_pred CeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEE-CCCC------cCCHHHHHHHHH
Q 043137 245 KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIE-DPFD------QDDWEHYAKLTS 317 (445)
Q Consensus 245 ~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iE-dP~~------~~D~~~~~~L~~ 317 (445)
.+.+.+|+....+...+ .|.+...+ .+..+..+.+++ .+.+++.++..|. ..+. .-|++.++++++
T Consensus 124 ~iv~slD~~~g~~~~~~-~~~v~i~g-----w~~~~~~~~~~~-~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~ 196 (254)
T TIGR00735 124 CIVVAIDAKRVYVNSYC-WYEVYIYG-----GRESTGLDAVEW-AKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSE 196 (254)
T ss_pred CEEEEEEeccCCCCCCc-cEEEEEeC-----CcccCCCCHHHH-HHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHH
Confidence 68899998432111001 23333221 011122334444 3445666644321 1222 236788899999
Q ss_pred HhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccC-CcccHHHHHHHHHHHHHcCCcE
Q 043137 318 EVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN-QIGSVTESIEAVRMSKQAGWGV 377 (445)
Q Consensus 318 ~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~-~~GGit~a~~ia~~A~~~g~~~ 377 (445)
.++ +||++.-- +++++++.+++..+.+|.+.+--. ..|.+ ...++.+.++++|+++
T Consensus 197 ~~~--ipvia~GG-i~s~~di~~~~~~g~~dgv~~g~a~~~~~~-~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 197 AVK--IPVIASGG-AGKPEHFYEAFTKGKADAALAASVFHYREI-TIGEVKEYLAERGIPV 253 (254)
T ss_pred hCC--CCEEEeCC-CCCHHHHHHHHHcCCcceeeEhHHHhCCCC-CHHHHHHHHHHCCCcc
Confidence 987 88732222 357999999999988999776433 22343 4667777788888874
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=83.99 E-value=33 Score=32.93 Aligned_cols=128 Identities=9% Similarity=0.090 Sum_probs=81.2
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEECCCC---cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIEDPFD---QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEdP~~---~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
..++.++.+++ .+.+++.++..||=-+| ++|++..+++.+... ++.+.+-- ..+.+++....+.+ ++.+.+-
T Consensus 15 ~~~~~~~k~~i-~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~-~~~~~~~~--r~~~~~v~~a~~~g-~~~i~i~ 89 (259)
T cd07939 15 VAFSREEKLAI-ARALDEAGVDEIEVGIPAMGEEEREAIRAIVALGL-PARLIVWC--RAVKEDIEAALRCG-VTAVHIS 89 (259)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcCC-CCEEEEec--cCCHHHHHHHHhCC-cCEEEEE
Confidence 46788888887 56788999999998544 345567777776432 25543332 13578888877654 6777764
Q ss_pred cCCc-------------ccHHHHHHHHHHHHHcCCcEEecCCCC-CChhhHHH---HHHhhhcCCccccCCCC
Q 043137 354 VNQI-------------GSVTESIEAVRMSKQAGWGVMASHRSG-ETEDTFIA---DLSVGLATGQIKTGAPC 409 (445)
Q Consensus 354 ~~~~-------------GGit~a~~ia~~A~~~g~~~~~~~~~~-et~~~~~~---~la~a~~~~~~~~G~~~ 409 (445)
.+.. -.+..++++++.|++.|+.+.++.... .+...... ..+...++..+.+.+..
T Consensus 90 ~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~ 162 (259)
T cd07939 90 IPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTV 162 (259)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCC
Confidence 4221 225567789999999999987777422 23344444 33445566666655543
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=82.85 E-value=29 Score=35.16 Aligned_cols=126 Identities=17% Similarity=0.226 Sum_probs=81.6
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEEC--CCC-cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIED--PFD-QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEd--P~~-~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
..++.++-+++ .+.+++.++..||= |.. ++|++..+.+.+... +..|++== ..+.++++.+++.+ ++.+.+-
T Consensus 17 ~~~s~~~k~~i-a~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~-~~~v~~~~--r~~~~di~~a~~~g-~~~i~i~ 91 (363)
T TIGR02090 17 VSLTVEQKVEI-ARKLDELGVDVIEAGFPIASEGEFEAIKKISQEGL-NAEICSLA--RALKKDIDKAIDCG-VDSIHTF 91 (363)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhcCC-CcEEEEEc--ccCHHHHHHHHHcC-cCEEEEE
Confidence 46788898887 56789999999997 543 466677777776543 35554321 23588999888775 6777762
Q ss_pred cC-------------CcccHHHHHHHHHHHHHcCCcEEecCC-CCCChhhHHHHH---HhhhcCCccccCC
Q 043137 354 VN-------------QIGSVTESIEAVRMSKQAGWGVMASHR-SGETEDTFIADL---SVGLATGQIKTGA 407 (445)
Q Consensus 354 ~~-------------~~GGit~a~~ia~~A~~~g~~~~~~~~-~~et~~~~~~~l---a~a~~~~~~~~G~ 407 (445)
++ +-.-+..+.+.+++|++.|+.+.++-. ...+......++ +...++..+.+.+
T Consensus 92 ~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~D 162 (363)
T TIGR02090 92 IATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIAD 162 (363)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 22 112356777899999999998876642 233444444444 4445666665444
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=82.18 E-value=36 Score=30.90 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHhhccCCeeeEEC--CCC-cCCHHHHHHHHHHhCCCceEEeCcccccCHH--HHHHHHhcCCCCEEEecc
Q 043137 280 SGDALKDLYKSFISDYPIVSIED--PFD-QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPK--RVEKAIKEKTCNALLLKV 354 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEd--P~~-~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~--~~~~~i~~~a~d~v~ik~ 354 (445)
+.+++.+. .+.+.+. +.|+|= |+- ..-++..+.+++..+ ++||.++-- +.++. .++.+. .-.+|++.+..
T Consensus 11 ~~~~~~~~-~~~l~~~-i~~ieig~~~~~~~g~~~i~~i~~~~~-~~~i~~~~~-v~~~~~~~~~~~~-~aGad~i~~h~ 85 (202)
T cd04726 11 DLEEALEL-AKKVPDG-VDIIEAGTPLIKSEGMEAVRALREAFP-DKIIVADLK-TADAGALEAEMAF-KAGADIVTVLG 85 (202)
T ss_pred CHHHHHHH-HHHhhhc-CCEEEcCCHHHHHhCHHHHHHHHHHCC-CCEEEEEEE-eccccHHHHHHHH-hcCCCEEEEEe
Confidence 45677776 4456666 999998 542 233677788887743 388877632 23332 234444 44577777665
Q ss_pred CCcccHHHHHHHHHHHHHcCCcEEec-CCCCCChhhHHHHHHhhhcCCcccc
Q 043137 355 NQIGSVTESIEAVRMSKQAGWGVMAS-HRSGETEDTFIADLSVGLATGQIKT 405 (445)
Q Consensus 355 ~~~GGit~a~~ia~~A~~~g~~~~~~-~~~~et~~~~~~~la~a~~~~~~~~ 405 (445)
.- +.....++.+.++.+|+.+.+. +. ..|...... +...++.++++
T Consensus 86 ~~--~~~~~~~~i~~~~~~g~~~~v~~~~-~~t~~e~~~--~~~~~~d~v~~ 132 (202)
T cd04726 86 AA--PLSTIKKAVKAAKKYGKEVQVDLIG-VEDPEKRAK--LLKLGVDIVIL 132 (202)
T ss_pred eC--CHHHHHHHHHHHHHcCCeEEEEEeC-CCCHHHHHH--HHHCCCCEEEE
Confidence 43 2244677888899999998753 32 233333222 44446677665
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=81.82 E-value=52 Score=31.80 Aligned_cols=139 Identities=12% Similarity=0.119 Sum_probs=85.9
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEECCCCcC------------CHHHHHHHHHHhCCCceE--EeCcccccCHHHHHHHH
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIEDPFDQD------------DWEHYAKLTSEVGEKVQI--VGDDLLVTNPKRVEKAI 342 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~------------D~~~~~~L~~~~~~~vpI--~gde~~~~~~~~~~~~i 342 (445)
-.+|.++.+++ .+.+++.++.+||=-++.. |.+.++++.+....+.++ +..-.. ...+++....
T Consensus 15 ~~f~~~~~~~i-a~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~a~ 92 (266)
T cd07944 15 WDFGDEFVKAI-YRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGN-DDIDLLEPAS 92 (266)
T ss_pred ccCCHHHHHHH-HHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCC-CCHHHHHHHh
Confidence 45788888876 6678999999999876542 267788887764212554 333221 1346666554
Q ss_pred hcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCC-CCChhhHHHHH---HhhhcCCccccCCCC---CchhHH
Q 043137 343 KEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRS-GETEDTFIADL---SVGLATGQIKTGAPC---RSERLA 415 (445)
Q Consensus 343 ~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~-~et~~~~~~~l---a~a~~~~~~~~G~~~---~~e~~~ 415 (445)
+ ..++.+.+-.... -+..+++++++|+++|+.+.++-+. ..+.......+ +...++..+.+.+.. ..+++.
T Consensus 93 ~-~gv~~iri~~~~~-~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~ 170 (266)
T cd07944 93 G-SVVDMIRVAFHKH-EFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIK 170 (266)
T ss_pred c-CCcCEEEEecccc-cHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHH
Confidence 4 3478877765443 6899999999999999998766421 22334433433 344566666644433 344443
Q ss_pred HHHH
Q 043137 416 KYNQ 419 (445)
Q Consensus 416 k~n~ 419 (445)
++=+
T Consensus 171 ~lv~ 174 (266)
T cd07944 171 RIIS 174 (266)
T ss_pred HHHH
Confidence 3333
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=81.70 E-value=12 Score=37.22 Aligned_cols=80 Identities=13% Similarity=0.247 Sum_probs=52.8
Q ss_pred HHHHHHHHhhccCCeeeE-------ECCC-CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEecc
Q 043137 283 ALKDLYKSFISDYPIVSI-------EDPF-DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 354 (445)
Q Consensus 283 ~ai~~~~~~l~~~~i~~i-------EdP~-~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~ 354 (445)
+.+++ .+.+++.++.+| ++.. ..-|++..++++++++ +||+|.-- +.+++++.++++...+|.|++==
T Consensus 150 ~~~~~-a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~--iPVI~nGg-I~s~~da~~~l~~~gadgVmiGR 225 (321)
T PRK10415 150 NCVEI-AQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVS--IPVIANGD-ITDPLKARAVLDYTGADALMIGR 225 (321)
T ss_pred hHHHH-HHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcC--CcEEEeCC-CCCHHHHHHHHhccCCCEEEECh
Confidence 34444 455677776665 2322 1257888899999988 99855443 46799999999988899999864
Q ss_pred CCcccHHHHHHH
Q 043137 355 NQIGSVTESIEA 366 (445)
Q Consensus 355 ~~~GGit~a~~i 366 (445)
.-.+-..=+.++
T Consensus 226 ~~l~nP~if~~~ 237 (321)
T PRK10415 226 AAQGRPWIFREI 237 (321)
T ss_pred HhhcCChHHHHH
Confidence 443333333333
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.83 E-value=26 Score=37.18 Aligned_cols=117 Identities=11% Similarity=0.160 Sum_probs=72.3
Q ss_pred HHHHHHhhccCCeeeEE-CCC---CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCC----
Q 043137 285 KDLYKSFISDYPIVSIE-DPF---DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ---- 356 (445)
Q Consensus 285 i~~~~~~l~~~~i~~iE-dP~---~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~---- 356 (445)
++....+ -+.++..|+ |+- ...-++..++|+++++ .++|+++.. .++++++.+++.+ +|+|.+-++-
T Consensus 243 ~~~~~~l-~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~-~~~v~aG~V--~t~~~a~~~~~aG-ad~I~vg~g~Gs~~ 317 (495)
T PTZ00314 243 IERAAAL-IEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYP-HVDIIAGNV--VTADQAKNLIDAG-ADGLRIGMGSGSIC 317 (495)
T ss_pred HHHHHHH-HHCCCCEEEEecCCCCchHHHHHHHHHHhhCC-CceEEECCc--CCHHHHHHHHHcC-CCEEEECCcCCccc
Confidence 4443444 446776666 442 2233567888998874 389877653 4689999988765 5777654321
Q ss_pred -------c--ccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCccccCCCC
Q 043137 357 -------I--GSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 357 -------~--GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+ ..++...+++..|+..|++++..+.. -+.-. +--|+++++..+..|...
T Consensus 318 ~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi-~~~~d--i~kAla~GA~~Vm~G~~~ 376 (495)
T PTZ00314 318 ITQEVCAVGRPQASAVYHVARYARERGVPCIADGGI-KNSGD--ICKALALGADCVMLGSLL 376 (495)
T ss_pred ccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCC-CCHHH--HHHHHHcCCCEEEECchh
Confidence 1 23566778888999999998664422 22111 222445578888887743
|
|
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=80.64 E-value=16 Score=36.63 Aligned_cols=69 Identities=7% Similarity=0.069 Sum_probs=48.1
Q ss_pred cCHHHHHHHHHHhhccCCeeeEEC--CC-----CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEE
Q 043137 279 ISGDALKDLYKSFISDYPIVSIED--PF-----DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALL 351 (445)
Q Consensus 279 ~t~~~ai~~~~~~l~~~~i~~iEd--P~-----~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ 351 (445)
.+.++++++ .+++++.++.+|+= .. ....++..+++++.++ +||++--. ++ ++++.++++.+.+|.|.
T Consensus 238 ~~~ee~~~~-~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~--ipvi~~G~-i~-~~~a~~~l~~g~~D~V~ 312 (338)
T cd02933 238 DPEATFSYL-AKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFK--GPLIAAGG-YD-AESAEAALADGKADLVA 312 (338)
T ss_pred CCHHHHHHH-HHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcC--CCEEEECC-CC-HHHHHHHHHcCCCCEEE
Confidence 567788876 56677776666542 11 2235566778888887 88744443 34 89999999999999987
Q ss_pred e
Q 043137 352 L 352 (445)
Q Consensus 352 i 352 (445)
+
T Consensus 313 ~ 313 (338)
T cd02933 313 F 313 (338)
T ss_pred e
Confidence 5
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=80.14 E-value=16 Score=34.21 Aligned_cols=110 Identities=15% Similarity=0.038 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHhhccCCeeeEECCCCcCC-HHHHHHHHHHhCC--CceEEeCcccccCHHHHHHHHhcCCCCEEEeccCC
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDPFDQDD-WEHYAKLTSEVGE--KVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP~~~~D-~~~~~~L~~~~~~--~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~ 356 (445)
+.+++++. .+.+-+.++..+|=++...+ ++..++|+++.+. ++.|-++- +.+++++++.++.++-=++.|-.+
T Consensus 23 ~~~~a~~~-~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGT--V~~~~~~~~a~~aGA~FivsP~~~- 98 (213)
T PRK06552 23 SKEEALKI-SLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGT--VLDAVTARLAILAGAQFIVSPSFN- 98 (213)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeee--CCCHHHHHHHHHcCCCEEECCCCC-
Confidence 45677776 55677789999999997544 5678899888742 26664443 567999999999887655544333
Q ss_pred cccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCcccc
Q 043137 357 IGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKT 405 (445)
Q Consensus 357 ~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~ 405 (445)
.++++.|+++|+.++.|.. ..++ +.-|...++.++|+
T Consensus 99 -------~~v~~~~~~~~i~~iPG~~-T~~E----~~~A~~~Gad~vkl 135 (213)
T PRK06552 99 -------RETAKICNLYQIPYLPGCM-TVTE----IVTALEAGSEIVKL 135 (213)
T ss_pred -------HHHHHHHHHcCCCEECCcC-CHHH----HHHHHHcCCCEEEE
Confidence 4577789999999866553 2222 22233456777776
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 445 | ||||
| 2psn_A | 434 | Crystal Structure Of Enolase1 Length = 434 | 1e-177 | ||
| 3b97_A | 433 | Crystal Structure Of Human Enolase 1 Length = 433 | 1e-176 | ||
| 3ucc_A | 439 | Asymmetric Complex Of Human Neuron Specific Enolase | 1e-173 | ||
| 1te6_A | 439 | Crystal Structure Of Human Neuron Specific Enolase | 1e-172 | ||
| 3uje_A | 443 | Asymmetric Complex Of Human Neuron Specific Enolase | 1e-172 | ||
| 2xsx_A | 435 | Crystal Structure Of Human Beta Enolase Enob Length | 1e-172 | ||
| 1pdz_A | 434 | X-Ray Structure And Catalytic Mechanism Of Lobster | 1e-171 | ||
| 3otr_A | 452 | 2.75 Angstrom Crystal Structure Of Enolase 1 From T | 1e-162 | ||
| 3qtp_A | 441 | Crystal Structure Analysis Of Entamoeba Histolytica | 1e-145 | ||
| 1els_A | 436 | Catalytic Metal Ion Binding In Enolase: The Crystal | 1e-142 | ||
| 1ebg_A | 436 | Chelation Of Ser 39 To Mg2+ Latches A Gate At The A | 1e-141 | ||
| 2al2_B | 436 | Crystal Structure Analysis Of Enolase Mg Subunit Co | 1e-141 | ||
| 1p48_A | 436 | Reverse Protonation Is The Key To General Acid-Base | 1e-141 | ||
| 1p43_A | 436 | Reverse Protonation Is The Key To General Acid-Base | 1e-141 | ||
| 1l8p_A | 436 | Mg-phosphonoacetohydroxamate Complex Of S39a Yeast | 1e-141 | ||
| 2al2_A | 436 | Crystal Structure Analysis Of Enolase Mg Subunit Co | 1e-141 | ||
| 2xh7_A | 443 | Engineering The Enolase Active Site Pocket: Crystal | 1e-140 | ||
| 2xh4_A | 443 | Engineering The Enolase Active Site Pocket: Crystal | 1e-140 | ||
| 2xgz_A | 443 | Engineering The Enolase Active Site Pocket: Crystal | 1e-140 | ||
| 2xh2_A | 443 | Engineering The Enolase Active Site Pocket: Crystal | 1e-140 | ||
| 4g7f_A | 429 | Crystal Structure Of Enolase From Trypanosoma Cruzi | 1e-140 | ||
| 2xh0_A | 443 | Engineering The Enolase Active Site Pocket: Crystal | 1e-139 | ||
| 1oep_A | 432 | Structure Of Trypanosoma Brucei Enolase Reveals The | 1e-137 | ||
| 2ptw_A | 432 | Crystal Structure Of The T. Brucei Enolase Complexe | 1e-137 | ||
| 2pa6_A | 427 | Crystal Structure Of Mj0232 From Methanococcus Jann | 1e-123 | ||
| 1iyx_A | 432 | Crystal Structure Of Enolase From Enterococcus Hira | 1e-122 | ||
| 4a3r_A | 430 | Crystal Structure Of Enolase From Bacillus Subtilis | 1e-120 | ||
| 1e9i_A | 431 | Enolase From E.Coli Length = 431 | 1e-113 | ||
| 3h8a_A | 432 | Crystal Structure Of E. Coli Enolase Bound To Its C | 1e-113 | ||
| 4ewj_A | 443 | Structure Of The Enloase From Streptococcus Suis Se | 1e-113 | ||
| 1w6t_A | 444 | Crystal Structure Of Octameric Enolase From Strepto | 1e-113 | ||
| 3uj2_A | 449 | Crystal Structure Of An Enolase From Anaerostipes C | 1e-111 | ||
| 3qn3_A | 417 | Phosphopyruvate Hydratase From Campylobacter Jejuni | 1e-100 | ||
| 3tqp_A | 428 | Structure Of An Enolase (Eno) From Coxiella Burneti | 3e-98 |
| >pdb|2PSN|A Chain A, Crystal Structure Of Enolase1 Length = 434 | Back alignment and structure |
|
| >pdb|3B97|A Chain A, Crystal Structure Of Human Enolase 1 Length = 433 | Back alignment and structure |
|
| >pdb|3UCC|A Chain A, Asymmetric Complex Of Human Neuron Specific Enolase-1-PgaPEP Length = 439 | Back alignment and structure |
|
| >pdb|1TE6|A Chain A, Crystal Structure Of Human Neuron Specific Enolase At 1.8 Angstrom Length = 439 | Back alignment and structure |
|
| >pdb|3UJE|A Chain A, Asymmetric Complex Of Human Neuron Specific Enolase-3-PgaPEP Length = 443 | Back alignment and structure |
|
| >pdb|2XSX|A Chain A, Crystal Structure Of Human Beta Enolase Enob Length = 435 | Back alignment and structure |
|
| >pdb|1PDZ|A Chain A, X-Ray Structure And Catalytic Mechanism Of Lobster Enolase Length = 434 | Back alignment and structure |
|
| >pdb|3OTR|A Chain A, 2.75 Angstrom Crystal Structure Of Enolase 1 From Toxoplasma Gondii Length = 452 | Back alignment and structure |
|
| >pdb|3QTP|A Chain A, Crystal Structure Analysis Of Entamoeba Histolytica Enolase Length = 441 | Back alignment and structure |
|
| >pdb|1ELS|A Chain A, Catalytic Metal Ion Binding In Enolase: The Crystal Structure Of Enolase-Mn2+-Phosphonoacetohydroxamate Complex At 2.4 Angstroms Resolution Length = 436 | Back alignment and structure |
|
| >pdb|1EBG|A Chain A, Chelation Of Ser 39 To Mg2+ Latches A Gate At The Active Site Of Enolase: Structure Of The Bis(Mg2+) Complex Of Yeast Enolase And The Intermediate Analog Phosphonoacetohydroxamate At 2.1 Angstroms Resolution Length = 436 | Back alignment and structure |
|
| >pdb|2AL2|B Chain B, Crystal Structure Analysis Of Enolase Mg Subunit Complex At Ph 8.0 Length = 436 | Back alignment and structure |
|
| >pdb|1P48|A Chain A, Reverse Protonation Is The Key To General Acid-Base Catalysis In Enolase Length = 436 | Back alignment and structure |
|
| >pdb|1P43|A Chain A, Reverse Protonation Is The Key To General Acid-Base Catalysis In Enolase Length = 436 | Back alignment and structure |
|
| >pdb|1L8P|A Chain A, Mg-phosphonoacetohydroxamate Complex Of S39a Yeast Enolase 1 Length = 436 | Back alignment and structure |
|
| >pdb|2AL2|A Chain A, Crystal Structure Analysis Of Enolase Mg Subunit Complex At Ph 8.0 Length = 436 | Back alignment and structure |
|
| >pdb|2XH7|A Chain A, Engineering The Enolase Active Site Pocket: Crystal Structure Of The D321a Mutant Of Yeast Enolase 1 Length = 443 | Back alignment and structure |
|
| >pdb|2XH4|A Chain A, Engineering The Enolase Active Site Pocket: Crystal Structure Of The S39a D321a Mutant Of Yeast Enolase 1 Length = 443 | Back alignment and structure |
|
| >pdb|2XGZ|A Chain A, Engineering The Enolase Active Site Pocket: Crystal Structure Of The S39n D321r Mutant Of Yeast Enolase 1 Length = 443 | Back alignment and structure |
|
| >pdb|2XH2|A Chain A, Engineering The Enolase Active Site Pocket: Crystal Structure Of The S39n D321a Mutant Of Yeast Enolase 1 Length = 443 | Back alignment and structure |
|
| >pdb|4G7F|A Chain A, Crystal Structure Of Enolase From Trypanosoma Cruzi Length = 429 | Back alignment and structure |
|
| >pdb|2XH0|A Chain A, Engineering The Enolase Active Site Pocket: Crystal Structure Of The S39n Q167k D321r Mutant Of Yeast Enolase 1 Length = 443 | Back alignment and structure |
|
| >pdb|1OEP|A Chain A, Structure Of Trypanosoma Brucei Enolase Reveals The Inhibitory Divalent Metal Site Length = 432 | Back alignment and structure |
|
| >pdb|2PTW|A Chain A, Crystal Structure Of The T. Brucei Enolase Complexed With Sulphate, Identification Of A Metal Binding Site Iv Length = 432 | Back alignment and structure |
|
| >pdb|2PA6|A Chain A, Crystal Structure Of Mj0232 From Methanococcus Jannaschii Length = 427 | Back alignment and structure |
|
| >pdb|1IYX|A Chain A, Crystal Structure Of Enolase From Enterococcus Hirae Length = 432 | Back alignment and structure |
|
| >pdb|4A3R|A Chain A, Crystal Structure Of Enolase From Bacillus Subtilis. Length = 430 | Back alignment and structure |
|
| >pdb|1E9I|A Chain A, Enolase From E.Coli Length = 431 | Back alignment and structure |
|
| >pdb|3H8A|A Chain A, Crystal Structure Of E. Coli Enolase Bound To Its Cognate Rnase E Recognition Domain Length = 432 | Back alignment and structure |
|
| >pdb|4EWJ|A Chain A, Structure Of The Enloase From Streptococcus Suis Serotype 2 Length = 443 | Back alignment and structure |
|
| >pdb|1W6T|A Chain A, Crystal Structure Of Octameric Enolase From Streptococcus Pneumoniae Length = 444 | Back alignment and structure |
|
| >pdb|3UJ2|A Chain A, Crystal Structure Of An Enolase From Anaerostipes Caccae (Efi Target Efi-502054) With Bound Mg And Sulfate Length = 449 | Back alignment and structure |
|
| >pdb|3QN3|A Chain A, Phosphopyruvate Hydratase From Campylobacter Jejuni. Length = 417 | Back alignment and structure |
|
| >pdb|3TQP|A Chain A, Structure Of An Enolase (Eno) From Coxiella Burnetii Length = 428 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 445 | |||
| 3otr_A | 452 | Enolase; structural genomics, center for structura | 0.0 | |
| 2akz_A | 439 | Gamma enolase, neural; fluoride inhibition, negati | 0.0 | |
| 2al1_A | 436 | Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: | 0.0 | |
| 3qtp_A | 441 | Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Ent | 0.0 | |
| 2ptz_A | 432 | Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypano | 0.0 | |
| 2pa6_A | 427 | Enolase; glycolysis, lyase, magnesium, metal-bindi | 0.0 | |
| 1w6t_A | 444 | Enolase; bacterial infection, surface protein, moo | 0.0 | |
| 2fym_A | 431 | Enolase; RNA degradosome, enolase, lyase; 1.60A {E | 0.0 | |
| 3uj2_A | 449 | Enolase 1; enzyme function initiative, EFI, lyase; | 0.0 | |
| 3tqp_A | 428 | Enolase; energy metabolism, lyase; 2.20A {Coxiella | 0.0 | |
| 3qn3_A | 417 | Enolase; structural genomics, center for structura | 0.0 | |
| 1kcz_A | 413 | Beta-methylaspartase; beta zigzag, alpha/beta-barr | 6e-25 | |
| 1kko_A | 413 | 3-methylaspartate ammonia-lyase; enolase superfami | 6e-21 | |
| 3qld_A | 388 | Mandelate racemase/muconate lactonizing protein; s | 3e-06 | |
| 1wuf_A | 393 | Hypothetical protein LIN2664; structural genomics, | 3e-06 | |
| 2okt_A | 342 | OSB synthetase, O-succinylbenzoic acid synthetase; | 6e-06 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 1e-05 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 1e-05 | |
| 1wue_A | 386 | Mandelate racemase/muconate lactonizing enzyme FA | 1e-05 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 1e-05 | |
| 2pge_A | 377 | MENC; OSBS, NYSGXRC, PSI-II, structural genomics, | 2e-05 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 3e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 7e-05 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 1e-04 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 2e-04 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 2e-04 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 3e-04 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 3e-04 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 4e-04 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 8e-04 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 8e-04 |
| >3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii} Length = 452 | Back alignment and structure |
|---|
Score = 841 bits (2174), Expect = 0.0
Identities = 279/449 (62%), Positives = 339/449 (75%), Gaps = 6/449 (1%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-Y 59
M I + AR+I DSRGNPT+EVDV+T G V RAAVPSGASTGIYEALELRD Y
Sbjct: 1 MV-VIKDIVAREILDSRGNPTIEVDVSTEGG-VFRAAVPSGASTGIYEALELRDKDPKRY 58
Query: 60 LGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILA 119
LGKGV AV V I PAL GKDP +Q ID MV+QLDGT NEWG+ K KLGANAIL
Sbjct: 59 LGKGVLNAVEIVRQEIKPALLGKDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILG 118
Query: 120 VSLAVCKAGAHVKKIPLYKHIAELSGNK--NLVLPVPAFNVINGGSHAGNKLAMQEFMIL 177
VS+A C+AGA K +PLYK+IA L+G +V+PVP FNVINGG HAGN LA+QEF+I
Sbjct: 119 VSIACCRAGAASKGLPLYKYIATLAGKTIDKMVMPVPFFNVINGGEHAGNGLALQEFLIA 178
Query: 178 PVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAI 237
PVGA +EA++ G E YHHLK VIK KYG DATNVGDEGGFAPN+ +E L LL AI
Sbjct: 179 PVGAPNIREAIRYGSETYHHLKNVIKNKYGLDATNVGDEGGFAPNVATAEEALNLLVEAI 238
Query: 238 AKAGYTGKVVIGMDVAASEFY-GSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYP 296
AGY GK+ I D AASEFY +K YDL++K + + S+ ++G+ LK++Y+ ++ YP
Sbjct: 239 KAAGYEGKIKIAFDAAASEFYKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYP 298
Query: 297 IVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356
I+S+EDPFDQDD+ ++ T +VGEK Q++GDD+LVTN R+EKA+K+K CN LLLKVNQ
Sbjct: 299 IISVEDPFDQDDFASFSAFTKDVGEKTQVIGDDILVTNILRIEKALKDKACNCLLLKVNQ 358
Query: 357 IGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAK 416
IGSVTE+IEA +++++GWGV SHRSGETED+FIADL VGL GQIK+G+PCRSERL K
Sbjct: 359 IGSVTEAIEACLLAQKSGWGVQVSHRSGETEDSFIADLVVGLRCGQIKSGSPCRSERLCK 418
Query: 417 YNQLLRIEEELGAEAVYAGAKFRAPVEPY 445
YNQL+RIEE LGA+ VYAG FR P +
Sbjct: 419 YNQLMRIEESLGADCVYAGESFRHPKRSH 447
|
| >2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A Length = 439 | Back alignment and structure |
|---|
Score = 815 bits (2109), Expect = 0.0
Identities = 305/445 (68%), Positives = 357/445 (80%), Gaps = 14/445 (3%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGK 62
+I + AR+I DSRGNPTVEVD+ T+ G + RAAVPSGASTGIYEALELRDG YLGK
Sbjct: 1 SIEKIWAREILDSRGNPTVEVDLYTAKG-LFRAAVPSGASTGIYEALELRDGDKQRYLGK 59
Query: 63 GVSKAVSNVNAIIGPAL--AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GV KAV ++N+ I PAL +G EQ +DN M++ LDGT N K K GANAIL V
Sbjct: 60 GVLKAVDHINSTIAPALISSGLSVVEQEKLDNLMLE-LDGTEN-----KSKFGANAILGV 113
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
SLAVCKAGA +++PLY+HIA+L+GN +L+LPVPAFNVINGGSHAGNKLAMQEFMILPVG
Sbjct: 114 SLAVCKAGAAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVG 173
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
A F++AM++G EVYH LK VIK KYG+DATNVGDEGGFAPNI EN E LEL+ AI KA
Sbjct: 174 AESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKA 233
Query: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
GYT K+VIGMDVAASEFY D YDL+FK D S+ I+GD L LY+ F+ DYP+VSI
Sbjct: 234 GYTEKIVIGMDVAASEFY-RDGKYDLDFKSP-TDPSRYITGDQLGALYQDFVRDYPVVSI 291
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
EDPFDQDDW ++K T+ VG +QIVGDDL VTNPKR+E+A++EK CN LLLKVNQIGSV
Sbjct: 292 EDPFDQDDWAAWSKFTANVG--IQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSV 349
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
TE+I+A +++++ GWGVM SHRSGETEDTFIADL VGL TGQIKTGAPCRSERLAKYNQL
Sbjct: 350 TEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQL 409
Query: 421 LRIEEELGAEAVYAGAKFRAPVEPY 445
+RIEEELG EA +AG FR P +
Sbjct: 410 MRIEEELGDEARFAGHNFRNPSVLH 434
|
| >2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ... Length = 436 | Back alignment and structure |
|---|
Score = 812 bits (2100), Expect = 0.0
Identities = 265/444 (59%), Positives = 326/444 (73%), Gaps = 15/444 (3%)
Query: 5 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKG 63
++ V AR ++DSRGNPTVEV++TT G V R+ VPSGASTG++EALE+RDG S ++GKG
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKG-VFRSIVPSGASTGVHEALEMRDGDKSKWMGKG 60
Query: 64 VSKAVSNVNAIIGPAL--AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVS 121
V AV NVN +I PA A D +Q A+D++++ LDGT N K KLGANAIL VS
Sbjct: 61 VLHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLIS-LDGTAN-----KSKLGANAILGVS 114
Query: 122 LAVCKAGAHVKKIPLYKHIAELSGNKN--LVLPVPAFNVINGGSHAGNKLAMQEFMILPV 179
LA +A A K +PLYKH+A+LS +K VLPVP NV+NGGSHAG LA+QEFMI P
Sbjct: 115 LAASRAAAAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHAGGALALQEFMIAPT 174
Query: 180 GASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAK 239
GA F EA+++G EVYH+LK++ KK+YG A NVGDEGG APNIQ +E L+L+ AI
Sbjct: 175 GAKTFAEALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKA 234
Query: 240 AGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVS 299
AG+ GKV IG+D A+SEF+ D YDL+FK N+D S+ ++G L DLY S + YPIVS
Sbjct: 235 AGHDGKVKIGLDCASSEFF-KDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVS 293
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
IEDPF +DDWE ++ G +QIV DDL VTNPKR+ AI++K +ALLLKVNQIG+
Sbjct: 294 IEDPFAEDDWEAWSHFFKTAG--IQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGT 351
Query: 360 VTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQ 419
++ESI+A + S AGWGVM SHRSGETEDTFIADL VGL TGQIKTGAP RSERLAK NQ
Sbjct: 352 LSESIKAAQDSFAAGWGVMVSHRSGETEDTFIADLVVGLRTGQIKTGAPARSERLAKLNQ 411
Query: 420 LLRIEEELGAEAVYAGAKFRAPVE 443
LLRIEEELG AV+AG F +
Sbjct: 412 LLRIEEELGDNAVFAGENFHHGDK 435
|
| >3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica} Length = 441 | Back alignment and structure |
|---|
Score = 809 bits (2093), Expect = 0.0
Identities = 266/442 (60%), Positives = 321/442 (72%), Gaps = 13/442 (2%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGK 62
+I V AR+I DSRGNPT+EV++TT G + R+ VPSGASTG++EA+ELRDG Y GK
Sbjct: 7 SIQKVHAREILDSRGNPTIEVEITTGKG-MFRSCVPSGASTGVHEAVELRDGDKKRYGGK 65
Query: 63 GVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSL 122
GV KAV NVN IIGPAL GK+ Q +D M++ LDGT N K KLGANAIL S+
Sbjct: 66 GVLKAVENVNTIIGPALLGKNVLNQAELDEMMIK-LDGTNN-----KGKLGANAILGCSM 119
Query: 123 AVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAS 182
++C+A A K +PLYK++AEL+G+K + +PVP FNVINGG+HAGN LAMQEFMI P GA+
Sbjct: 120 SICRAAAAEKGLPLYKYLAELTGHKEMTMPVPCFNVINGGAHAGNALAMQEFMICPTGAT 179
Query: 183 CFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGY 242
F EA++M E Y LK VIK KYGQDATNVGDEGGFAPN+ +E L+LL AIAKAGY
Sbjct: 180 NFHEALRMAAETYQCLKVVIKAKYGQDATNVGDEGGFAPNVSGAREALDLLVEAIAKAGY 239
Query: 243 TGKVVIGMDVAASEFYGSD-KTYDLNFK--EENNDGSQKISGDALKDLYKSFISDYPIVS 299
TGK+ I MD AASEFY + K YDL K + D S D L Y + YPI S
Sbjct: 240 TGKIEIAMDCAASEFYNEETKKYDLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYPIAS 299
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
IEDPF +DDW + K T E G QIVGDDLLVTNP RV+ A+ + CN++L+KVNQIG+
Sbjct: 300 IEDPFAEDDWAAWNKFTVEHG-NFQIVGDDLLVTNPARVQMAMDKNACNSVLIKVNQIGT 358
Query: 360 VTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQ 419
+TE+ + ++M+++ GWGVMASHRSGETEDTFIADL VGL QIKTGAPCRSERL KYNQ
Sbjct: 359 LTETFKTIKMAQEKGWGVMASHRSGETEDTFIADLVVGLNCKQIKTGAPCRSERLCKYNQ 418
Query: 420 LLRIEEELGAEAVYAGAKFRAP 441
L+RIEEELG YAG +R
Sbjct: 419 LMRIEEELG-NIPYAGKNWRNS 439
|
| >2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A 2pu0_A 2pu1_A* 1oep_A Length = 432 | Back alignment and structure |
|---|
Score = 808 bits (2089), Expect = 0.0
Identities = 252/438 (57%), Positives = 315/438 (71%), Gaps = 12/438 (2%)
Query: 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLG 61
+TI V R++ DSRGNPTVEV+VTT G V R+AVPSGASTG+YEA ELRDG Y+G
Sbjct: 4 MTIQKVHGREVLDSRGNPTVEVEVTTEKG-VFRSAVPSGASTGVYEACELRDGDKKRYVG 62
Query: 62 KGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVS 121
KG +AV NVN +IGPAL G+D +Q +D M++ LDGT N K KLGANAIL S
Sbjct: 63 KGCLQAVKNVNEVIGPALIGRDELKQEELDTLMLR-LDGTPN-----KGKLGANAILGCS 116
Query: 122 LAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGA 181
+A+ KA A K +PLY+++A L+G K L LPVP FNVINGG HAGN L QEFMI PV A
Sbjct: 117 MAISKAAAAAKGVPLYRYLASLAGTKELRLPVPCFNVINGGKHAGNALPFQEFMIAPVKA 176
Query: 182 SCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAG 241
+ F EA++MG EVYH L+ +IKKKYGQDA NVGDEGGFAP I++ E L +L AI +AG
Sbjct: 177 TSFSEALRMGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAG 236
Query: 242 YTGKVVIGMDVAASEFYGSDK-TYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
+ GK I MD AASE Y K Y+L FK + ++ + L++ Y + DYPIVSI
Sbjct: 237 HRGKFAICMDCAASETYDEKKQQYNLTFK---SPEPTWVTAEQLRETYCKWAHDYPIVSI 293
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
EDP+DQDD+ +A +T + K QIVGDDL VTN +R++ AI++K CN+LLLK+NQIG++
Sbjct: 294 EDPYDQDDFAGFAGITEALKGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKINQIGTI 353
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
+E+I + ++ + GW VM SHRSGETEDT+IADL V L +GQIKTGAPCR ER AK NQL
Sbjct: 354 SEAIASSKLCMENGWSVMVSHRSGETEDTYIADLVVALGSGQIKTGAPCRGERTAKLNQL 413
Query: 421 LRIEEELGAEAVYAGAKF 438
LRIEEELGA A + +
Sbjct: 414 LRIEEELGAHAKFGFPGW 431
|
| >2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii} Length = 427 | Back alignment and structure |
|---|
Score = 759 bits (1962), Expect = 0.0
Identities = 244/439 (55%), Positives = 309/439 (70%), Gaps = 21/439 (4%)
Query: 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGK 62
I + AR++ DSRGNPTVEV+V T A VPSGASTG +EALELRD + GK
Sbjct: 9 FEIKDIVAREVIDSRGNPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEKRFGGK 68
Query: 63 GVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSL 122
GV AV NVN+II P + G D Q ID M++ LDGT N K +LGANAILAVSL
Sbjct: 69 GVLMAVENVNSIIRPEILGYDARMQREIDTIMIE-LDGTPN-----KSRLGANAILAVSL 122
Query: 123 AVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAS 182
AV KA A KIPLYK++ G + V+PVP NVINGG HAGN L +QEFMI+PVGA+
Sbjct: 123 AVAKAAAATAKIPLYKYLG---GFNSYVMPVPMMNVINGGKHAGNDLDLQEFMIMPVGAT 179
Query: 183 CFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGY 242
EA++MG EVYH LK VI +KYG++A NVGDEGGFAP ++ ++E L+LL ++ KAGY
Sbjct: 180 SISEAVRMGSEVYHVLKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLLTESVKKAGY 239
Query: 243 TGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIED 302
+VV +D AASEFY D Y + K K++ + L D YK+ + +YPIVSIED
Sbjct: 240 EDEVVFALDAAASEFY-KDGYYYVEGK--------KLTREELLDYYKALVDEYPIVSIED 290
Query: 303 PFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTE 362
PF ++D+E +A +T E+ +QIVGDDL VTN +R+ K I+ K NALLLKVNQIG+++E
Sbjct: 291 PFHEEDFEGFAMITKEL--DIQIVGDDLFVTNVERLRKGIEMKAANALLLKVNQIGTLSE 348
Query: 363 SIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLR 422
+++A +++ + G+GV+ SHRSGETEDT IADLSV L +GQIKTGAP R ER AKYNQL+R
Sbjct: 349 AVDAAQLAFRNGYGVVVSHRSGETEDTTIADLSVALNSGQIKTGAPARGERTAKYNQLIR 408
Query: 423 IEEELGAEAVYAGAKFRAP 441
IE+ELG + YAG FR P
Sbjct: 409 IEQELGL-SKYAGRNFRCP 426
|
| >1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A Length = 444 | Back alignment and structure |
|---|
Score = 666 bits (1721), Expect = 0.0
Identities = 216/440 (49%), Positives = 291/440 (66%), Gaps = 16/440 (3%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-Y 59
M+I IT V AR++ DSRGNPT+EV+V T G R VPSGASTG +EA+ELRDG Y
Sbjct: 11 MSI-ITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRY 69
Query: 60 LGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILA 119
G G KAV NVN II A+ G D +Q AID M+ LDGT N K KLGANAIL
Sbjct: 70 GGLGTQKAVDNVNNIIAEAIIGYDVRDQQAIDRAMIA-LDGTPN-----KGKLGANAILG 123
Query: 120 VSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPV 179
VS+AV +A A +IPLY ++ + VLP P N+INGGSH+ +A QEFMILPV
Sbjct: 124 VSIAVARAAADYLEIPLYSYLGGFNTK---VLPTPMMNIINGGSHSDAPIAFQEFMILPV 180
Query: 180 GASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAK 239
GA FKEA++ G E++H LK ++K + T VGDEGGFAP + ++G+E + AI
Sbjct: 181 GAPTFKEALRYGAEIFHALKKILKSR--GLETAVGDEGGFAPRFEGTEDGVETILAAIEA 238
Query: 240 AGYT-GK-VVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPI 297
AGY GK V +G D A+SEFY + ++ + +G+ + D + ++ YPI
Sbjct: 239 AGYVPGKDVFLGFDCASSEFY-DKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYPI 297
Query: 298 VSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 357
++IED D++DW+ + LT +G+KVQ+VGDD VTN + + I+E N++L+KVNQI
Sbjct: 298 ITIEDGMDENDWDGWKALTERLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQI 357
Query: 358 GSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKY 417
G++TE+ EA+ M+K+AG+ + SHRSGETED+ IAD++V GQIKTG+ R++R+AKY
Sbjct: 358 GTLTETFEAIEMAKEAGYTAVVSHRSGETEDSTIADIAVATNAGQIKTGSLSRTDRIAKY 417
Query: 418 NQLLRIEEELGAEAVYAGAK 437
NQLLRIE++LG A Y G K
Sbjct: 418 NQLLRIEDQLGEVAEYRGLK 437
|
| >2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A Length = 431 | Back alignment and structure |
|---|
Score = 665 bits (1718), Expect = 0.0
Identities = 230/442 (52%), Positives = 292/442 (66%), Gaps = 19/442 (4%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGK 62
I + R+I DSRGNPTVE +V G V AA PSGASTG EALELRDG +LGK
Sbjct: 2 KIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGK 61
Query: 63 GVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSL 122
GV+KAV+ VN I AL GKD +Q ID M+ LDGT N K K GANAILAVSL
Sbjct: 62 GVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMID-LDGTEN-----KSKFGANAILAVSL 115
Query: 123 AVCKAGAHVKKIPLYKHIAELSGNKN-LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGA 181
A KA A K +PLY+HIAEL+G +PVP N+INGG HA N + +QEFMI PVGA
Sbjct: 116 ANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGA 175
Query: 182 SCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAG 241
KEA++MG EV+HHL V+K K G T VGDEGG+APN+ N E L ++ A+ AG
Sbjct: 176 KTVKEAIRMGSEVFHHLAKVLKAK-GM-NTAVGDEGGYAPNLGSNAEALAVIAEAVKAAG 233
Query: 242 YT-GK-VVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVS 299
Y GK + + MD AASEFY D Y L +G++ + + + YPIVS
Sbjct: 234 YELGKDITLAMDCAASEFY-KDGKYVLA-----GEGNKAFTSEEFTHFLEELTKQYPIVS 287
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
IED D+ DW+ +A T +G+K+Q+VGDDL VTN K +++ I++ N++L+K NQIGS
Sbjct: 288 IEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGS 347
Query: 360 VTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQ 419
+TE++ A++M+K AG+ + SHRSGETED IADL+VG A GQIKTG+ RS+R+AKYNQ
Sbjct: 348 LTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQ 407
Query: 420 LLRIEEELGAEAVYAGAK-FRA 440
L+RIEE LG +A Y G K +
Sbjct: 408 LIRIEEALGEKAPYNGRKEIKG 429
|
| >3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A {Anaerostipes caccae} Length = 449 | Back alignment and structure |
|---|
Score = 661 bits (1708), Expect = 0.0
Identities = 218/437 (49%), Positives = 295/437 (67%), Gaps = 19/437 (4%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGK 62
I V R+I DSRGNPTVE +V + G R PSGASTG +EALELRDG + GK
Sbjct: 27 EIEKVIGREIIDSRGNPTVEAEVYLAGGVTGRGTAPSGASTGEFEALELRDGDKGRFGGK 86
Query: 63 GVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSL 122
GV+KAV N+N I L+G D ++ A+D M+ DGT + K K GANA+LAVS+
Sbjct: 87 GVTKAVQNINTEISEILSGMDASDIYAVDRAMID-ADGTKD-----KSKFGANAVLAVSI 140
Query: 123 AVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAS 182
A KA A +PLY+ + L+ N LPVP N++NGG+HA N + +QEFMI+PVGA
Sbjct: 141 ACAKAAAAALGVPLYRFLGGLNAN---RLPVPMMNILNGGAHAANTVDVQEFMIMPVGAE 197
Query: 183 CFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGY 242
F+EA++ EV+H L ++K K AT+VGDEGGFAP++ ++E +E + A+ AGY
Sbjct: 198 SFREALRQCTEVFHALAGLLKSK--GLATSVGDEGGFAPDLASDEEAIEYILEAVKLAGY 255
Query: 243 T-GK-VVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
G+ V+ MD A+SE+ +K + + +K + + L +KS YPIVSI
Sbjct: 256 EPGRDFVLAMDAASSEWK-GEKKGEYILPKCK----RKFASEELVAHWKSLCERYPIVSI 310
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
ED D++DWE + +T E+G+K+Q+VGDDL VTN +R+ K IKE+ N++L+K+NQIG+V
Sbjct: 311 EDGLDEEDWEGWQYMTRELGDKIQLVGDDLFVTNTERLNKGIKERCGNSILIKLNQIGTV 370
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
+E++EA++M+ +AG+ + SHRSGETEDT IADL+V L TGQIKTGAP RSER+AKYNQL
Sbjct: 371 SETLEAIKMAHKAGYTAVVSHRSGETEDTTIADLAVALNTGQIKTGAPSRSERVAKYNQL 430
Query: 421 LRIEEELGAEAVYAGAK 437
LRIEEELG AVY G
Sbjct: 431 LRIEEELGDSAVYPGFT 447
|
| >3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii} Length = 428 | Back alignment and structure |
|---|
Score = 658 bits (1699), Expect = 0.0
Identities = 212/440 (48%), Positives = 280/440 (63%), Gaps = 22/440 (5%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-Y 59
M TIT + A +I DSR NPT+EV VT S AAVPSGASTG EA+ELRD + Y
Sbjct: 1 MTATITDINAHEILDSRANPTLEVRVTLSSQAYGCAAVPSGASTGEREAVELRDNDLERY 60
Query: 60 LGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILA 119
GKGV +AV NVN I AL G+DP Q ID M++ LDGT N K LGANAIL
Sbjct: 61 GGKGVLQAVENVNGPIRDALLGQDPRSQEEIDRIMIE-LDGTEN-----KANLGANAILG 114
Query: 120 VSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPV 179
VSLAV A A+ +PLY+++ G +PVP N+INGG+HA N L QEFMI+PV
Sbjct: 115 VSLAVAYAAANNADLPLYRYLGGDGGP--FSMPVPMMNIINGGAHATNNLDFQEFMIVPV 172
Query: 180 GASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAK 239
GA F EA++ G EV+H LK + + G + VGDEGGFAP++ N+ EL+ AI
Sbjct: 173 GAPTFAEALRYGAEVFHALKKRLVSR-GL-MSAVGDEGGFAPDLPNNEAAFELILEAIED 230
Query: 240 AGYT-GK-VVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPI 297
A Y GK + + +D A+SE Y + YD + +Q + + + D + YP+
Sbjct: 231 ANYVPGKDIYLALDAASSELY-QNGRYDF-------ENNQL-TSEEMIDRLTEWTKKYPV 281
Query: 298 VSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 357
+SIED ++DW + LT + KVQ+VGDD+ VTNP +EK IK+ NA+L+K+NQI
Sbjct: 282 ISIEDGLSENDWAGWKLLTERLENKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLNQI 341
Query: 358 GSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKY 417
G++TE++ V ++K +GV+ SHRSGETEDT IADL+V QIKTG+ CRS+R+AKY
Sbjct: 342 GTLTETLATVGLAKSNKYGVIISHRSGETEDTTIADLAVATDARQIKTGSLCRSDRVAKY 401
Query: 418 NQLLRIEEELGAEAVYAGAK 437
N+LL+IE EL +A YAG +
Sbjct: 402 NRLLQIERELNDQAPYAGKE 421
|
| >3qn3_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, glycolysis, lyase; 2.13A {Campylobacter jejuni} Length = 417 | Back alignment and structure |
|---|
Score = 652 bits (1685), Expect = 0.0
Identities = 203/438 (46%), Positives = 277/438 (63%), Gaps = 24/438 (5%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
M + I V+A ++ DSRGNPTV+ +VT SDG V A VPSGASTG EALELRD +
Sbjct: 4 MLV-IEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTGSKEALELRDNDERFG 62
Query: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GKGV KAV+NVN I + G D QT +D+ + + LDGT N LGANA L V
Sbjct: 63 GKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRE-LDGTNN-----YSNLGANATLGV 116
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
S+A +A A +PLY+++ + + +LPVP N+INGG+HA N + QEFMI+P G
Sbjct: 117 SMATARAAAAALGMPLYRYLGGANAS---ILPVPMCNIINGGAHANNNVDFQEFMIMPFG 173
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
+ FKEA++ E+Y LK + +T +GDEGGFAPN+ N E ++LL T I KA
Sbjct: 174 FTSFKEALRSVCEIYAILKKELANS--GHSTALGDEGGFAPNLANNTEPIDLLMTCIKKA 231
Query: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
GY +V I +DVA++EF+ D Y + +G + S +AL + Y + YPI SI
Sbjct: 232 GYENRVKIALDVASTEFF-KDGKYHM-------EG-KAFSSEALIERYVELCAKYPICSI 282
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
ED ++D+E + KLT ++G K+Q+VGDDL VTN + + I +K NA+L+K NQIG++
Sbjct: 283 EDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPNQIGTI 342
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
T+++ VR++++ + + SHRSGE+ED FIAD +V L TGQIKTGA R ER AKYN+L
Sbjct: 343 TQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQIKTGALARGERTAKYNRL 402
Query: 421 LRIEEELGAEAVYAGAKF 438
L IE E Y G K
Sbjct: 403 LEIEFESDE---YLGEKL 417
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A Length = 413 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 6e-25
Identities = 70/422 (16%), Positives = 135/422 (31%), Gaps = 75/422 (17%)
Query: 21 TVEVDVTTSDGHVAR--AAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPA 78
++ V + DG VA A + G + L L + + I P
Sbjct: 52 SISVLLVLEDGQVAHGDCAAVQYSGAGGRDPLFLAKD-----------FIPVIEKEIAPK 100
Query: 79 LAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYK 138
L G++ T + ++ D +L ++ A+ A A +K+ + +
Sbjct: 101 LIGREITNFKPM----AEEFDKMTVNGN----RLHTAIRYGITQAILDAVAKTRKVTMAE 152
Query: 139 HIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHL 198
I + + VP F ++ + MI +K + H L
Sbjct: 153 VIRDEYNPGAEINAVPVF-----AQSGDDRYDNVDKMI-----------IKEADVLPHAL 196
Query: 199 KAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFY 258
+++K G ++ E ++ L I K +
Sbjct: 197 INNVEEKLGLKG-------------EKLLEYVKWLRDRIIKLRVREDYAPIFHIDVYGTI 243
Query: 259 GSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDD----WEHYAK 314
G+ D+ D ++ L + + + IE P D +D E
Sbjct: 244 GAAFDVDIK---------AMA--DYIQTLAE-AAKPFHL-RIEGPMDVEDRQKQMEAMRD 290
Query: 315 LTSEV---GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSK 371
L +E+ G ++V D+ T + V+ K + + +K +G V +A+ K
Sbjct: 291 LRAELDGRGVDAELVADEWCNT-VEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCK 349
Query: 372 QAGWGVMASHRSGETEDTFIADLSVGLATGQ----IKTGAPCRSERLAKYNQLLRIEEEL 427
G G ET + ++G+A G K G + N++ R+ +
Sbjct: 350 ANGMGAYCGGTCNETNRSAEVTTNIGMACGARQVLAKPGMGVDEGMMIVKNEMNRVLALV 409
Query: 428 GA 429
G
Sbjct: 410 GR 411
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* Length = 413 | Back alignment and structure |
|---|
Score = 93.6 bits (232), Expect = 6e-21
Identities = 73/425 (17%), Positives = 132/425 (31%), Gaps = 81/425 (19%)
Query: 21 TVEVDVTTSDGHVAR---AAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGP 77
V V + +G VA AAV + G RD +L + +++ I P
Sbjct: 52 CVSVQLILENGAVAVGDCAAVQYSGAGG-------RD--PLFLAEHFIPFLNDH---IKP 99
Query: 78 ALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLY 137
L G+D + + L +S A+ A A
Sbjct: 100 LLEGRDVDAFLPNARFFDKLRID--------GNLLHTAVRYGLSQALLDATALASGRLKT 151
Query: 138 KHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHH 197
+ + + + +P F G ++ + MIL K + H
Sbjct: 152 EVVCDEWQLPCVPEAIPLF-----GQSGDDRYIAVDKMIL-----------KGVDVLPHA 195
Query: 198 LKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYT--GKVVIGMDVAAS 255
L +++K G ++ +E + L+ I + + +DV
Sbjct: 196 LINNVEEKLGFKG-------------EKLREYVRWLSDRILSLRSSPRYHPTLHIDV--- 239
Query: 256 EFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFD----QDDWEH 311
YG+ D + + L K P+ IE P D D
Sbjct: 240 --YGT--------IGLIFDMDPVRCAEYIASLEKE-AQGLPL-YIEGPVDAGNKPDQIRM 287
Query: 312 YAKLTSEV---GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVR 368
+T E+ G V+IV D+ + + +C+ + +K +G + ++AV
Sbjct: 288 LTAITKELTRLGSGVKIVADEW-CNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVL 346
Query: 369 MSKQAGWGVMASHRSGETEDTFIADLSVGLATG--QI--KTGAPCRSERLAKYNQLLRIE 424
+ G ETE + + V LA ++ K G +N++ R
Sbjct: 347 YCNKHGMEAYQGGTCNETEISARTCVHVALAARPMRMLIKPGMGFDEGLNIVFNEMNRTI 406
Query: 425 EELGA 429
L
Sbjct: 407 ALLQT 411
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} Length = 388 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
Y + IE P +DDW AKL + + + + D+ + + + ++ + L +K
Sbjct: 214 AYDLQFIEQPLPEDDWFDLAKLQASL--RTPVCLDESVRS-VRELKLTARLGAARVLNVK 270
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
++G ++ A+ ++ +AG
Sbjct: 271 PGRLGGFGATLRALDVAGEAGMAAW 295
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 Length = 393 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
Y + IE PF D+ +A L ++ K +I D+ + + K VE+A +C A+ LK
Sbjct: 226 QYDLEMIEQPFGTKDFVDHAWLQKQL--KTRICLDENIRS-VKDVEQAHSIGSCRAINLK 282
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSER 413
+ ++G ++ +++ V E ++++ + G S R
Sbjct: 283 LARVGGMSSALKIAEYCALNEILVW-CGGMLEAGVGRAHNIALAARNEFVFPGDISASNR 341
Query: 414 L 414
Sbjct: 342 F 342
|
| >2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A Length = 342 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 6e-06
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
++ IE+PF + I D+ T+ + I+ ++LK
Sbjct: 190 REQVLYIEEPFKDISMLDEVADGT----IPPIALDEK-ATSLLDIINLIELYNVKVVVLK 244
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
++G + + A+ K G V+
Sbjct: 245 PFRLGGIDKVQTAIDTLKSHGAKVV 269
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A Length = 375 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 4/121 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+Y + IE P DD +A+L + + + D+ + + KA+ + LK
Sbjct: 213 EYDLTYIEQPLAWDDLVDHAELARRI--RTPLCLDESVAS-ASDARKALALGAGGVINLK 269
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSER 413
V ++G ES +++ G V E+ ++ + + G + R
Sbjct: 270 VARVGGHAESRRVHDVAQSFGAPVW-CGGMLESGIGRAHNIHLSTLSNFRLPGDTSSASR 328
Query: 414 L 414
Sbjct: 329 Y 329
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* Length = 368 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ ++ IE P +++D +A+L + + I D+ +V+ + AIK + +K
Sbjct: 207 PFGLLLIEQPLEEEDVLGHAELARRI--QTPICLDESIVS-ARAAADAIKLGAVQIVNIK 263
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
++G E+ + G V
Sbjct: 264 PGRVGGYLEARRVHDVCAAHGIPVW 288
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
Y + IE PF DD+ +A+L E+ K +I D+ + + K + A+ +C ++ LK
Sbjct: 226 HYQLAMIEQPFAADDFLDHAQLQREL--KTRICLDENIRS-LKDCQVALALGSCRSINLK 282
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ ++G + E+++ ++ V
Sbjct: 283 IPRVGGIHEALKIAAFCQENDLLVW 307
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 4/121 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ + IE P DD +AKL E+ I D+ L ++ KAI+ +K
Sbjct: 206 ELRLDYIEQPLAYDDLLDHAKLQREL--STPICLDESLTG-AEKARKAIELGAGRVFNVK 262
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSER 413
++G ES+ +++ AG + E +L + G K G + R
Sbjct: 263 PARLGGHGESLRVHALAESAGIPLW-MGGMLEAGVGRAHNLHLATLPGFTKPGDVSSASR 321
Query: 414 L 414
Sbjct: 322 Y 322
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} Length = 377 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 19/99 (19%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 282 DALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKA 341
+A + L + +S + + SIE P Q W A L + + I D+ L+ +++
Sbjct: 223 NAPQRLKR--LSQFHLHSIEQPIRQHQWSEMAALCANS--PLAIALDEELIG-LGAEQRS 277
Query: 342 IKEKTCNA--LLLKVNQIGSVTESIEAVRMSKQAGWGVM 378
++LK + +G + + + ++++ G G
Sbjct: 278 AMLDAIRPQYIILKPSLLGGFHYAGQWIELARERGIGFW 316
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 Length = 370 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 15/85 (17%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ + +E P + ++ +LT + G V I+ D+ L + + ++ +A LK
Sbjct: 213 EAGVELVEQPVPRANFGALRRLTEQNG--VAILADESLSS-LSSAFELARDHAVDAFSLK 269
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ +G + +++ +++ AG
Sbjct: 270 LCNMGGIANTLKVAAVAEAAGISSY 294
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 4e-05
Identities = 60/397 (15%), Positives = 114/397 (28%), Gaps = 135/397 (34%)
Query: 26 VTTSDGHVARAAVPSGASTGIYEALELRDGG----------SDYLGKGVSK---AVSNVN 72
+TT V A+T + +L+ YL V N
Sbjct: 270 LTTRFKQVTDFL---SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 73 ----AIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAG 128
+II ++ +D DN+ D KL I+ SL V +
Sbjct: 327 PRRLSIIAESI--RDGLAT--WDNWKHVNCD-----------KL--TTIIESSLNVLEP- 368
Query: 129 AHVKKIPLYKHIAELSGNKNLVLP----VPAFNVI----NGGSHAGNKLAMQEFMILPVG 180
A +K ++ ++ V P +P ++ + + + +
Sbjct: 369 AEYRK--MFDRLS--------VFPPSAHIPT-ILLSLIWFDVIKSDVMVVVNKL----HK 413
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDAT---------NVG---DEGGFAPNIQEN-- 226
S ++ K + +K K + N+ D P +
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 227 --KEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTY-DLNF---KEENNDGSQKIS 280
G L + ++ + F + D F K ++ + S
Sbjct: 474 YSHIGHHL-----KNIEHPERM--------TLF---RMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 281 G---DALKDL--YKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNP 335
G + L+ L YK +I D DP Y +L + + + + + ++L
Sbjct: 518 GSILNTLQQLKFYKPYICD------NDP-------KYERLVNAILDFLPKIEENL----- 559
Query: 336 KRVEKAIKEKTCNALLLKVNQIGSVTES----IEAVR 368
I K + L +I + E EA +
Sbjct: 560 ------ICSKYTDLL-----RIALMAEDEAIFEEAHK 585
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} Length = 400 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ E P + +L + + I D+ L++ + E K N +K
Sbjct: 229 AAKCLFHEQPLHYEALLDLKELGERI--ETPICLDESLIS-SRVAEFVAKLGISNIWNIK 285
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ ++G + E+I+ +++ G +
Sbjct: 286 IQRVGGLLEAIKIYKIATDNGIKLW 310
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A Length = 382 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 11/151 (7%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
I IE P +++ +L + I+ D+ + + +E + LK
Sbjct: 219 GNGIDLIEQPISRNNRAGMVRLNASSP--APIMADESIEC-VEDAFNLAREGAASVFALK 275
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSER 413
+ + G ++ +++ AG G+ E +A L ++
Sbjct: 276 IAKNGGPRATLRTAAIAEAAGIGLY-GGTMLEGGIGTLASAHAFLTLNKLSWDTEL---- 330
Query: 414 LAKYNQLLRIEEELGAEAVYAGAKFRAPVEP 444
+ LL E+ L VY P
Sbjct: 331 ---FGPLLLTEDILAEPPVYRDFHLHVSKAP 358
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} Length = 381 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ IE P D +L+ ++ I+ D+ + T + ++ A LK
Sbjct: 218 AMGVDLIEQPVSAHDNAALVRLSQQIE--TAILADEAVAT-AYDGYQLAQQGFTGAYALK 274
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ + G + R+++ AG G+
Sbjct: 275 IAKAGGPNSVLALARVAQAAGIGLY 299
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A Length = 385 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ IE P +E A+L V ++ D+ + P+ + +A E C+ + +K
Sbjct: 217 QFQPDFIEQPVRAHHFELMARLRGLT--DVPLLADESVYG-PEDMVRAAHEGICDGVSIK 273
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVMASH 381
+ + G +T + R++ G
Sbjct: 274 IMKSGGLTRAQTVARIAAAHGLMAYGGD 301
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} SCOP: c.1.11.2 d.54.1.1 PDB: 2chr_A Length = 370 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 14/85 (16%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ IE P +++ + +L+ +V I+ D+ L T ++++ + LK
Sbjct: 213 ALGVELIEQPVGRENTQALRRLSDNN--RVAIMADESLST-LASAFDLARDRSVDVFSLK 269
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ +G V+ + + +++ +G
Sbjct: 270 LCNMGGVSATQKIAAVAEASGIASY 294
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* Length = 367 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 15/85 (17%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
D ++ E+ DD +L ++ + + D+ + T P V + + + A+ +K
Sbjct: 210 DLDLLFAEELCPADDVLSRRRLVGQLD--MPFIADESVPT-PADVTREVLGGSATAISIK 266
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ G T S +++ G ++
Sbjct: 267 TARTG-FTGSTRVHHLAEGLGLDMV 290
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} Length = 383 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ + E P DD E ++T V ++ D+ + T P +K + + + LK
Sbjct: 219 EAGVELFEQPTPADDLETLREITRRT--NVSVMADESVWT-PAEALAVVKAQAADVIALK 275
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ G + ES + +++ G
Sbjct: 276 TTKHGGLLESKKIAAIAEAGGLACH 300
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* Length = 369 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 8e-04
Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
I IE P DD + A + S+ + ++ D+ L + + + + IK + + + +K
Sbjct: 211 HLNIDWIEQPVIADDIDAMAHIRSKT--DLPLMIDEGLKS-SREMRQIIKLEAADKVNIK 267
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ + G + +++ ++ AG
Sbjct: 268 LMKCGGIYPAVKLAHQAEMAGIECQ 292
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A Length = 366 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 8e-04
Identities = 16/85 (18%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
I +E P +DD K+T I+ D+ + T P++ + ++ ++ + + +K
Sbjct: 212 GLGIELVEQPVHKDDLAGLKKVTDATD--TPIMADESVFT-PRQAFEVLQTRSADLINIK 268
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ + G ++ + + M++ G M
Sbjct: 269 LMKAGGISGAEKINAMAEACGVECM 293
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 445 | |||
| 3otr_A | 452 | Enolase; structural genomics, center for structura | 100.0 | |
| 3qtp_A | 441 | Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Ent | 100.0 | |
| 3tqp_A | 428 | Enolase; energy metabolism, lyase; 2.20A {Coxiella | 100.0 | |
| 3uj2_A | 449 | Enolase 1; enzyme function initiative, EFI, lyase; | 100.0 | |
| 3qn3_A | 417 | Enolase; structural genomics, center for structura | 100.0 | |
| 2al1_A | 436 | Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: | 100.0 | |
| 2akz_A | 439 | Gamma enolase, neural; fluoride inhibition, negati | 100.0 | |
| 2ptz_A | 432 | Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypano | 100.0 | |
| 2pa6_A | 427 | Enolase; glycolysis, lyase, magnesium, metal-bindi | 100.0 | |
| 2fym_A | 431 | Enolase; RNA degradosome, enolase, lyase; 1.60A {E | 100.0 | |
| 1w6t_A | 444 | Enolase; bacterial infection, surface protein, moo | 100.0 | |
| 4hnl_A | 421 | Mandelate racemase/muconate lactonizing enzyme; de | 100.0 | |
| 1kcz_A | 413 | Beta-methylaspartase; beta zigzag, alpha/beta-barr | 100.0 | |
| 1kko_A | 413 | 3-methylaspartate ammonia-lyase; enolase superfami | 100.0 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 100.0 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 100.0 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 100.0 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 100.0 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 100.0 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 100.0 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 100.0 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 100.0 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 100.0 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 100.0 | |
| 4hpn_A | 378 | Putative uncharacterized protein; enolase, enzyme | 100.0 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 100.0 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 100.0 | |
| 4h1z_A | 412 | Enolase Q92ZS5; dehydratase, magnesium binding sit | 100.0 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 100.0 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 100.0 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 100.0 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 100.0 | |
| 4h83_A | 388 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 2chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Cupriavidus | 100.0 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 100.0 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 100.0 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 100.0 | |
| 4e4f_A | 426 | Mannonate dehydratase; magnesium binding, enzyme f | 100.0 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 100.0 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 100.0 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 100.0 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 100.0 | |
| 1wue_A | 386 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 100.0 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 100.0 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 100.0 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 100.0 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 100.0 | |
| 3ik4_A | 365 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 100.0 | |
| 4dxk_A | 400 | Mandelate racemase / muconate lactonizing enzyme p | 100.0 | |
| 3vdg_A | 445 | Probable glucarate dehydratase; enolase, magnesium | 100.0 | |
| 4a35_A | 441 | Mitochondrial enolase superfamily member 1; isomer | 100.0 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 100.0 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 100.0 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 4e8g_A | 391 | Enolase, mandelate racemase/muconate lactonizing e | 100.0 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 100.0 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3s5s_A | 389 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 100.0 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 3u9i_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 100.0 | |
| 3qld_A | 388 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 100.0 | |
| 1wuf_A | 393 | Hypothetical protein LIN2664; structural genomics, | 100.0 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 100.0 | |
| 3vc5_A | 441 | Mandelate racemase/muconate lactonizing protein; d | 100.0 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3ekg_A | 404 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 100.0 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 100.0 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 3cyj_A | 372 | Mandelate racemase/muconate lactonizing enzyme-LI | 100.0 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 100.0 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 100.0 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 100.0 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3fxg_A | 455 | Rhamnonate dehydratase; structural gemomics, enola | 100.0 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 100.0 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 100.0 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 3p0w_A | 470 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 3va8_A | 445 | Probable dehydratase; enolase, magnesium binding s | 100.0 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 100.0 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 100.0 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 100.0 | |
| 3mzn_A | 450 | Glucarate dehydratase; lyase, structural genomics, | 100.0 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 100.0 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 100.0 | |
| 4h2h_A | 376 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 100.0 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 100.0 | |
| 3pfr_A | 455 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2pge_A | 377 | MENC; OSBS, NYSGXRC, PSI-II, structural genomics, | 100.0 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 100.0 | |
| 2p3z_A | 415 | L-rhamnonate dehydratase; enolase, structural geno | 100.0 | |
| 4g8t_A | 464 | Glucarate dehydratase; enolase, enzyme function IN | 100.0 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 100.0 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 100.0 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 100.0 | |
| 3ijl_A | 338 | Muconate cycloisomerase; enolase superfamily, dipe | 100.0 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 3v5c_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 100.0 | |
| 2okt_A | 342 | OSB synthetase, O-succinylbenzoic acid synthetase; | 100.0 | |
| 1jpd_X | 324 | L-Ala-D/L-Glu epimerase; enolase superfamily, muco | 100.0 | |
| 4gfi_A | 329 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 2ozt_A | 332 | TLR1174 protein; structural genomics, O-succinylbe | 100.0 | |
| 1r6w_A | 322 | OSB synthase, O-succinylbenzoate synthase, OSBS; e | 100.0 | |
| 3caw_A | 330 | O-succinylbenzoate synthase; structural genomics, | 100.0 | |
| 2opj_A | 327 | O-succinylbenzoate-COA synthase; TIM barrel, struc | 99.93 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 96.86 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 96.08 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 96.0 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 95.37 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 95.36 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 95.16 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 95.14 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 95.04 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 94.89 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 93.41 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 93.36 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 93.06 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 93.01 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 92.28 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 90.3 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 88.79 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 87.03 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 84.45 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 83.91 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 83.89 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 82.63 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 80.41 |
| >3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-101 Score=773.04 Aligned_cols=441 Identities=63% Similarity=1.033 Sum_probs=421.9
Q ss_pred CceEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhh
Q 043137 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPAL 79 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~L 79 (445)
|+ +|++|++|+|+||+|+|||+|+|+|++|++ ++++|+|+|||.+|+.++||+++. |.|+++..+++.|++.|+|.|
T Consensus 1 m~-~I~~i~areildSrGnpTvEv~v~~~~G~~-ra~vPsGaStG~~Ea~elrD~d~~~y~Gkgv~kAv~~vn~~Iap~L 78 (452)
T 3otr_A 1 MV-VIKDIVAREILDSRGNPTIEVDVSTEGGVF-RAAVPSGASTGIYEALELRDKDPKRYLGKGVLNAVEIVRQEIKPAL 78 (452)
T ss_dssp CC-CCCEEEEEEEECTTSCEEEEEEEEETTEEE-EEECCCCBSSCSSSCBCCCCCCTTSGGGTCCHHHHHHHHHTHHHHH
T ss_pred CC-cceEEEEEEEEcCCCCEEEEEEEEECCccE-EEeccccCCCCcceEEeecCCCcccccCccHHHHHHHHHHHHHHHH
Confidence 54 899999999999999999999999999987 999999999999999999999865 999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCC--cceeeeeeEE
Q 043137 80 AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNK--NLVLPVPAFN 157 (445)
Q Consensus 80 iG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~--~~~vp~~~~~ 157 (445)
+|+|+.+|+.||+.|.+.+++++|.|+|+.+.+|.||+.|||+|++.+.|+..|+|||+|||.++|.. ...+|+|+++
T Consensus 79 ig~d~~dQ~~iD~~m~~~lDgT~n~~~~~ks~lGaNail~vSlAvakAaA~~~~~PLy~yi~~l~g~~~~~~~lPvP~~n 158 (452)
T 3otr_A 79 LGKDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILGVSIACCRAGAASKGLPLYKYIATLAGKTIDKMVMPVPFFN 158 (452)
T ss_dssp TTCCTTCHHHHHHHHHHTTTCCEETTEECCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCSSSEEECEECEE
T ss_pred cCCChHhHHHHHHHHHHHhcCCCCcccccccccCcchhhHHHHHHHHHHHHhcCCcHHHHHHHhcCCCCcceecccceEE
Confidence 99999999999999986899999999999999999999999999999999999999999999877765 5689999999
Q ss_pred eecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHH
Q 043137 158 VINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAI 237 (445)
Q Consensus 158 ~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av 237 (445)
+++||.|+++++++||||++|.++.+++|+++++.++|+++|+.||.|+|...+.+|++|+|.|++++.++.|+++.+|+
T Consensus 159 vinGG~ha~n~l~~QEfmi~P~ga~sf~ealr~g~evyh~Lk~vl~~k~g~~~t~vgDEGgfap~~~~~~eaL~ll~~Ai 238 (452)
T 3otr_A 159 VINGGEHAGNGLALQEFLIAPVGAPNIREAIRYGSETYHHLKNVIKNKYGLDATNVGDEGGFAPNVATAEEALNLLVEAI 238 (452)
T ss_dssp EEECGGGCSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGCBCTTSCBCCCCCSHHHHHHHHHHHH
T ss_pred EecCcccCCCCCCcCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccccCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHhCCCCCeEEEEeccccccccCCc-eeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHH
Q 043137 238 AKAGYTGKVVIGMDVAASEFYGSDK-TYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLT 316 (445)
Q Consensus 238 ~~~g~~~~i~l~vD~~a~~~~~~~~-~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~ 316 (445)
+++||+++|.|++|+++++||+..+ +|+++|++|+.+.+..+|++|++++|.+++++|||.||||||+++|+++|++|+
T Consensus 239 ~~aGy~~~i~i~lD~Aasefy~~~~g~Y~l~fk~~~~~~~~~~t~~Elid~y~~lle~ypIv~IEDPl~~dD~eg~a~Lt 318 (452)
T 3otr_A 239 KAAGYEGKIKIAFDAAASEFYKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYPIISVEDPFDQDDFASFSAFT 318 (452)
T ss_dssp HHHTCTTTSEEEEECCGGGGEETTTTEEETTTTCSSCCGGGEECHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHH
T ss_pred HHcCCCceEEEccccchHhheeccCCeEEeeccCCCCcccccccHHHHHHHHHHHHhhhCceEEecCCChhhHHHHHHHH
Confidence 9999987999999999999995322 899999887766667899999999999999999999999999999999999999
Q ss_pred HHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHh
Q 043137 317 SEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSV 396 (445)
Q Consensus 317 ~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~ 396 (445)
++++.++||+|||++++++++++++++.+++|+++||++|+||||++++++++|+++|+.+|++|+++||+|++++||||
T Consensus 319 ~~lg~~iqIvGDDl~vTn~~~i~~~Ie~~a~n~IlIKvnQIGgITEalka~~lA~~~G~~vmvshrSGETeD~~iAdLaV 398 (452)
T 3otr_A 319 KDVGEKTQVIGDDILVTNILRIEKALKDKACNCLLLKVNQIGSVTEAIEACLLAQKSGWGVQVSHRSGETEDSFIADLVV 398 (452)
T ss_dssp HHHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHHHHHH
T ss_pred HhhCCCeEEEeCccccCCHHHHHHHHhcCCCCEEEeeccccccHHHHHHHHHHHHHcCCeEEEeCCCCCCchhHHHHHHH
Confidence 99988899999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCccccCCCCCchhHHHHHHHHHHHHHhCccccccccccCCCCC
Q 043137 397 GLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFRAPVE 443 (445)
Q Consensus 397 a~~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~~~~~~~ 443 (445)
|++++|+|.|+|+|+||++||||||||||||+++++|.+.+||+|+.
T Consensus 399 gl~~gqIKtGap~rsER~aKyNqLlrIeeelg~~a~~~g~~~~~~~~ 445 (452)
T 3otr_A 399 GLRCGQIKSGSPCRSERLCKYNQLMRIEESLGADCVYAGESFRHPKR 445 (452)
T ss_dssp HTTCCEEECCCSCSHHHHHHHHHHHHHHHHHGGGEEECGGGTTSCC-
T ss_pred HcCCCccccCCCcchhHHHHHHHHHHHHHHhCccceecccccCCCcc
Confidence 99999999999999999999999999999999999999999999985
|
| >3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-99 Score=757.05 Aligned_cols=431 Identities=61% Similarity=0.978 Sum_probs=412.7
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhhcC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAG 81 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~LiG 81 (445)
|.|++|++|+|+||+|+|||+|+|+|++|.+ ++++|+|+|||.+|+.++||+++. |.|+++..+++.|++.|+|.|+|
T Consensus 6 m~I~~i~ar~ildsrGnptvev~v~~~~g~~-ra~vPsgaStG~~Ea~elrd~d~~~y~Gkgv~kAv~~vn~~iap~Lig 84 (441)
T 3qtp_A 6 MSIQKVHAREILDSRGNPTIEVEITTGKGMF-RSCVPSGASTGVHEAVELRDGDKKRYGGKGVLKAVENVNTIIGPALLG 84 (441)
T ss_dssp TBCCEEEEEEEECTTSCEEEEEEEEETTEEE-EEECCCCCSCCSSSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHTT
T ss_pred cEEEEEEEEEEECCCCCEEEEEEEEECCCcE-EEecccCCCCCcceeEeecCCCcccccCccHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999999999999999988 999999999999999999999865 99999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecC
Q 043137 82 KDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVING 161 (445)
Q Consensus 82 ~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~g 161 (445)
+|+.||+.||+.|. .++++.| .+.+|.||+.|||+|+|++.|+..|+|||+|||.+.|.....+|+|++++++|
T Consensus 85 ~~~~dQ~~iD~~m~-~lDgT~n-----ks~lGaNail~vSlAvakAaA~~~~~PLy~~l~~l~g~~~~~lPvP~~nvinG 158 (441)
T 3qtp_A 85 KNVLNQAELDEMMI-KLDGTNN-----KGKLGANAILGCSMSICRAAAAEKGLPLYKYLAELTGHKEMTMPVPCFNVING 158 (441)
T ss_dssp CBTTCHHHHHHHHH-HHHCSTT-----CTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCCCCBCEEEEEEEEC
T ss_pred CChhhHHHHHHHHH-hccCCCC-----ccCCCccchhhHHHHHHHHHHHhcCCcHHHHHHhhcCCCCceeccceEeeecC
Confidence 99999999999999 8999998 68999999999999999999999999999999877777777899999999999
Q ss_pred cccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhC
Q 043137 162 GSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAG 241 (445)
Q Consensus 162 g~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g 241 (445)
|.|+++++++||||++|.++.+++|+++++.++|+++|+.||.|+|...+.+|++|+|.|++++.++.|+.+.+|++++|
T Consensus 159 G~ha~n~l~~QEfmi~P~ga~sf~ealr~~~evyh~Lk~~l~~k~g~~~t~vgdEGgfap~~~~~~eaL~ll~~Ai~~aG 238 (441)
T 3qtp_A 159 GAHAGNALAMQEFMICPTGATNFHEALRMAAETYQCLKVVIKAKYGQDATNVGDEGGFAPNVSGAREALDLLVEAIAKAG 238 (441)
T ss_dssp GGGCSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGCBCTTSCBCCCCSSHHHHHHHHHHHHHHHT
T ss_pred CccCCCccccceeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCcccCCCCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred CCCCeEEEEeccccccccCCc-eeeecccCC--CCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHH
Q 043137 242 YTGKVVIGMDVAASEFYGSDK-TYDLNFKEE--NNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSE 318 (445)
Q Consensus 242 ~~~~i~l~vD~~a~~~~~~~~-~y~~~~~~~--~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~ 318 (445)
|+++|.|++|+++++||++++ +|+++|++| +.+.+..+|++|++++|.+++++|+|.||||||+++|+++|++|+++
T Consensus 239 y~~~i~i~lD~Aasefy~~~~g~Y~l~f~~~~~~~~~~~~~t~~elid~y~~lle~ypI~~IEDPl~~dD~eg~a~Lt~~ 318 (441)
T 3qtp_A 239 YTGKIEIAMDCAASEFYNEETKKYDLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYPIASIEDPFAEDDWAAWNKFTVE 318 (441)
T ss_dssp CTTTCEEEEECCGGGGEETTTTEEETTTTSCGGGCCGGGEECHHHHHHHHHHHHHHSCEEEEESCSCTTCHHHHHHHHHH
T ss_pred CCceEEEccchhHHHhhhccCCeEEeecCCcccccccccccCHHHHHHHHHHHhhhcceeeecCCCChHHHHHHHHHHHh
Confidence 987999999999999998633 899998776 34445678999999999999999999999999999999999999999
Q ss_pred hCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhh
Q 043137 319 VGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGL 398 (445)
Q Consensus 319 ~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~ 398 (445)
++ ++||+|||++++++++++++++.+++|+++||++|+||||++++++++|+++|+.+|++|+++||++++++|||||+
T Consensus 319 lg-~i~IvGDEl~vTn~~~i~~~Ie~~a~n~IlIKvnqiGGITEalkaa~lA~~~G~~vmvsHrsgETeDt~iAdLAVal 397 (441)
T 3qtp_A 319 HG-NFQIVGDDLLVTNPARVQMAMDKNACNSVLIKVNQIGTLTETFKTIKMAQEKGWGVMASHRSGETEDTFIADLVVGL 397 (441)
T ss_dssp TT-TSEEEESTTTTTCHHHHHHHHHHTCCSEEEECGGGTCCHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHHHHHHHT
T ss_pred cC-CceEEeccccccCHHHHHHHHHcCCCCEEEecccccccHHHHHHHHHHHHHcCCeEEEeCCCCCccHhHHHHHHHHh
Confidence 96 69999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCchhHHHHHHHHHHHHHhCccccccccccCCCC
Q 043137 399 ATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFRAPV 442 (445)
Q Consensus 399 ~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~~~~~~ 442 (445)
+++|+|.|.|+|+||++||||||||||||++ +.|.+.+||+|.
T Consensus 398 ~~gqIKtGap~rseR~aKyNqLlrIeeelg~-a~~~g~~~~~~~ 440 (441)
T 3qtp_A 398 NCKQIKTGAPCRSERLCKYNQLMRIEEELGN-IPYAGKNWRNST 440 (441)
T ss_dssp TCEEEECCCSCSHHHHHHHHHHHHHHHHHSS-CCBCTTCCBCCC
T ss_pred CCCccccCCCcchhHHHHHHHHHHHHHHhCc-CeecccccccCC
Confidence 9999999999999999999999999999999 999999999996
|
| >3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-93 Score=724.95 Aligned_cols=417 Identities=50% Similarity=0.811 Sum_probs=386.0
Q ss_pred CceEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhh
Q 043137 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPAL 79 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~L 79 (445)
|..+|++|++|+|+||+|+|||+|+|+|++|++|+|++|+++|||.+|+.+++|+++. |.|+++.++++.|++.|+|.|
T Consensus 1 ~~~~i~~~~~r~i~dsrg~ptvev~v~t~~G~~G~~~~psgastG~~ea~elrd~~~~~y~gkgv~~av~~v~~~iap~L 80 (428)
T 3tqp_A 1 MTATITDINAHEILDSRANPTLEVRVTLSSQAYGCAAVPSGASTGEREAVELRDNDLERYGGKGVLQAVENVNGPIRDAL 80 (428)
T ss_dssp -CCCEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCBCC---CCSCCCCCCCCTTSGGGTCCHHHHHHHHTHHHHHH
T ss_pred CCceEEEEEEEEEEcCCCCCEEEEEEEECCCCEEEEeccccccCCcceeEeecCCCccccccccHHHHHHHHHHHHHHHh
Confidence 6669999999999999999999999999999999999999999999999999998864 999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccC-CCcceeeeeeEEe
Q 043137 80 AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSG-NKNLVLPVPAFNV 158 (445)
Q Consensus 80 iG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G-~~~~~vp~~~~~~ 158 (445)
+|+||.+|++||+.|. .++++.+ ++.++.+|++||||||||+.||.+|+|||+||| | ..+.++|+|+|++
T Consensus 81 iG~d~~~~~~i~~~m~-~~dgt~~-----k~~lg~nAi~aVd~Alwda~ak~~g~PLy~lLG---G~~~~~~~pvp~~~~ 151 (428)
T 3tqp_A 81 LGQDPRSQEEIDRIMI-ELDGTEN-----KANLGANAILGVSLAVAYAAANNADLPLYRYLG---GDGGPFSMPVPMMNI 151 (428)
T ss_dssp TTCCTTCHHHHHHHHH-HHHCCTT-----CTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHH---TTTCCCCBCEEEEEE
T ss_pred cCCCccCHHHHHHHHH-HhcCcCC-----cCccchhHHHHHHHHHHHHHHHHcCCCHHHHhC---CCCCCceeeeEEEEE
Confidence 9999999999999999 7887765 578889999999999999999999999999999 9 6556799999999
Q ss_pred ecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHH
Q 043137 159 INGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIA 238 (445)
Q Consensus 159 ~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~ 238 (445)
++||.|+++++++||+|++|.++.+++++++++.++|+++|.+++.| |. .+.+|++|+|.|++++++++|+.+.+|+|
T Consensus 152 inGG~ha~~~~~~qefmi~P~ga~~~~ea~~~~~egy~~lK~~l~~~-g~-~t~vGdegg~ap~~~~~~e~l~~i~~Air 229 (428)
T 3tqp_A 152 INGGAHATNNLDFQEFMIVPVGAPTFAEALRYGAEVFHALKKRLVSR-GL-MSAVGDEGGFAPDLPNNEAAFELILEAIE 229 (428)
T ss_dssp EECC----CCCSSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHT-TC-CCCBCTTSCBCCCCSSHHHHHHHHHHHHH
T ss_pred ecCcccCCCccchhHHhhcCcchhhHHHHHHHHHHHHHhHhhhhccc-cc-ccccCCCCCcCCCcccHHHHHHHHHHHHH
Confidence 99999988889999999999999999999999999999999988877 53 67899999999999888999999889999
Q ss_pred HhCCC-C-CeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHH
Q 043137 239 KAGYT-G-KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLT 316 (445)
Q Consensus 239 ~~g~~-~-~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~ 316 (445)
++||+ + ++.|++|+|++++|+++ +|+++ |+.||++++++++.+++++|++.|||||++++|+++|++|+
T Consensus 230 ~agy~~G~dv~l~vD~aase~~~~g-~Y~l~--------~~~~t~~eai~~~~~ll~~y~i~~IEdPl~~dD~eg~~~L~ 300 (428)
T 3tqp_A 230 DANYVPGKDIYLALDAASSELYQNG-RYDFE--------NNQLTSEEMIDRLTEWTKKYPVISIEDGLSENDWAGWKLLT 300 (428)
T ss_dssp HTTCCBTTTBEEEEECCGGGSEETT-EECCS--------SSCBCHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHH
T ss_pred HhhcccCCceEEEEecchhhhccCC-ceecc--------ccccCHHHHHHHHHHHHhhcccceEeCCCCcccHHHHHHHH
Confidence 99886 4 89999999999999888 89874 68999999999988889999999999999999999999999
Q ss_pred HHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHh
Q 043137 317 SEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSV 396 (445)
Q Consensus 317 ~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~ 396 (445)
++++.++||+|||++++++++++++++.+++|++|||++|+||||++++++++|+++|+++|++|+++||++++++||||
T Consensus 301 ~~~~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~iKv~~iGGiTealkia~lA~~~G~~~~v~H~sGEted~~iadLaV 380 (428)
T 3tqp_A 301 ERLENKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLNQIGTLTETLATVGLAKSNKYGVIISHRSGETEDTTIADLAV 380 (428)
T ss_dssp HHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHH
T ss_pred HhcCCCcceeccccccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHHHHHHH
Confidence 99987788999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCccccCCCCCchhHHHHHHHHHHHHHhCccccccccc
Q 043137 397 GLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAK 437 (445)
Q Consensus 397 a~~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~ 437 (445)
|+++.|+|.|+|+|+||++||||||||||||++.++|.+.+
T Consensus 381 a~~~~~ik~G~p~r~er~akyn~llriee~l~~~~~~~~~~ 421 (428)
T 3tqp_A 381 ATDARQIKTGSLCRSDRVAKYNRLLQIERELNDQAPYAGKE 421 (428)
T ss_dssp HTTCEEEECCCSSSHHHHHHHHHHHHHHHHHTTSSCBCGGG
T ss_pred HcCCCcccCCCCcchhHHHHHhHHHHHHHHhCcccEecCcc
Confidence 99999999999999999999999999999999999998753
|
| >3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A {Anaerostipes caccae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-93 Score=725.97 Aligned_cols=419 Identities=53% Similarity=0.848 Sum_probs=389.0
Q ss_pred ceEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhhc
Q 043137 2 AITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALA 80 (445)
Q Consensus 2 ~mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~Li 80 (445)
.|+|++|++|+|+||+|+|||+|+|+|++|++|+|++|+++|||.+|+.+++|+++. |.|+++.++++.|++.|+|.|+
T Consensus 25 ~m~I~~i~~r~i~dsrg~ptvev~v~t~~G~~G~~~~psgastG~~ea~elrd~~~~~y~g~~v~~av~~v~~~iap~Li 104 (449)
T 3uj2_A 25 YLEIEKVIGREIIDSRGNPTVEAEVYLAGGVTGRGTAPSGASTGEFEALELRDGDKGRFGGKGVTKAVQNINTEISEILS 104 (449)
T ss_dssp TTBEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCBC---CCSSCCCCCCCCTTSGGGTCCHHHHHHHHTHHHHHHT
T ss_pred ceEEEEEEEEEEECCCCCCeEEEEEEECCCCEEEEeccCCCcCcceeEEEeccCCcccccchhHHHHHHHHHHHHHHHHc
Confidence 489999999999999999999999999999999999999999999999999998874 9999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeec
Q 043137 81 GKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVIN 160 (445)
Q Consensus 81 G~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~ 160 (445)
|+||.+|++||+.|. .++++.+ ++.++.+|++||||||||++||.+|+|||+||| |..+.++|+|+|++++
T Consensus 105 G~d~~~~e~i~~~m~-~~dgt~~-----k~~lg~nAi~aVd~Alwda~ak~~g~PLy~lLG---G~~~~~lpvp~~n~in 175 (449)
T 3uj2_A 105 GMDASDIYAVDRAMI-DADGTKD-----KSKFGANAVLAVSIACAKAAAAALGVPLYRFLG---GLNANRLPVPMMNILN 175 (449)
T ss_dssp TSBTTCHHHHHHHHH-HHHCSSS-----CTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHH---GGGCCBCCEECEEEEE
T ss_pred cCCccCHHHHHHHHH-HhcCcCC-----cchhhHHHHHHHHHHHHHHHHHHhCCCHHHHhC---CCCCCceeeeeEEEec
Confidence 999999999999999 7877755 678889999999999999999999999999999 9887899999999999
Q ss_pred CcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHh
Q 043137 161 GGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240 (445)
Q Consensus 161 gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~ 240 (445)
||.|+++++++||+|++|.++.+++++++++.++|+++|..+|.| | ..+++|++|+|.|+++++++.++.+++|+|++
T Consensus 176 GG~ha~~~~~~qEfmi~P~ga~~~~ea~~~~~egy~~lK~~lk~~-g-~~t~vGdeggfap~~~~~~e~l~~i~~AIr~a 253 (449)
T 3uj2_A 176 GGAHAANTVDVQEFMIMPVGAESFREALRQCTEVFHALAGLLKSK-G-LATSVGDEGGFAPDLASDEEAIEYILEAVKLA 253 (449)
T ss_dssp CSTTSSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHT-T-CCCCBCTTSCBCCCCSCHHHHHHHHHHHHHHT
T ss_pred CcccCCCccchhhhhhCCcccccHHHHHHHHHHHHHHHHHHHhhc-C-CccccCCCCCcCCCccCHHHHHHHHHHHHHHh
Confidence 999988889999999999999999999999999999999888877 5 56789999999999988999999999999999
Q ss_pred CCC-C-CeEEEEeccccccccCCc-eeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHH
Q 043137 241 GYT-G-KVVIGMDVAASEFYGSDK-TYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTS 317 (445)
Q Consensus 241 g~~-~-~i~l~vD~~a~~~~~~~~-~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~ 317 (445)
||+ + ++.|++|+|++++|++++ +|++. +.++.||++++++++.+++++|++.|||||++++|+++|++|++
T Consensus 254 gy~~G~dv~l~vD~aase~~~~~~g~Y~l~------~~~~~~t~~eai~~~~~lle~y~i~~IEdPl~~dD~eg~~~L~~ 327 (449)
T 3uj2_A 254 GYEPGRDFVLAMDAASSEWKGEKKGEYILP------KCKRKFASEELVAHWKSLCERYPIVSIEDGLDEEDWEGWQYMTR 327 (449)
T ss_dssp TCCBTTTBEEEEECCGGGCBCSSTTEEECT------TTCCEEEHHHHHHHHHHHHHHSCEEEEESCSCTTCHHHHHHHHH
T ss_pred ccccCCceEEEEEcchhhhccccCceeecc------CcccccCHHHHHHHHHHHHHhcCceEEECCCCcchHHHHHHHHH
Confidence 886 4 899999999999998533 78874 12357899999999888899999999999999999999999999
Q ss_pred HhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhh
Q 043137 318 EVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVG 397 (445)
Q Consensus 318 ~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a 397 (445)
+++.++||+|||++++++++++++++.+++|++|||++|+||||++++++++|+++|+++|++|+++||++++++|||||
T Consensus 328 ~~~~~ipI~gDE~~~tn~~~~~~~i~~~a~d~i~iKv~~iGGiTea~kia~lA~~~Gi~~~v~H~sgET~d~~iadLaVa 407 (449)
T 3uj2_A 328 ELGDKIQLVGDDLFVTNTERLNKGIKERCGNSILIKLNQIGTVSETLEAIKMAHKAGYTAVVSHRSGETEDTTIADLAVA 407 (449)
T ss_dssp HHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHHH
T ss_pred HhCCCceEECCcceeCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHHHHHHHH
Confidence 99555999999998778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccccCCCCCchhHHHHHHHHHHHHHhCccccccccc
Q 043137 398 LATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAK 437 (445)
Q Consensus 398 ~~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~ 437 (445)
++++|+|.|+|+|+||++||||||||||||++.++|.+..
T Consensus 408 ~~~~~ik~G~~~r~er~akyn~llriee~l~~~~~~~~~~ 447 (449)
T 3uj2_A 408 LNTGQIKTGAPSRSERVAKYNQLLRIEEELGDSAVYPGFT 447 (449)
T ss_dssp TTCCEEECCCSCSHHHHHHHHHHHHHHHHHGGGCBCCGGG
T ss_pred hCCCcccCCCCchhhHHHHHHHHHHHHHHhccccEeCCcc
Confidence 9999999999999999999999999999999999998753
|
| >3qn3_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, glycolysis, lyase; 2.13A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-92 Score=719.33 Aligned_cols=406 Identities=49% Similarity=0.779 Sum_probs=385.3
Q ss_pred EEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCC
Q 043137 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKD 83 (445)
Q Consensus 4 kI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d 83 (445)
+|++|++|+|+||+|+|||+|+|+|++|++|++++|+|+|||.+|+.+++|+++.|.|+++.++++.|++.|+|.|+|+|
T Consensus 6 ~i~~i~~r~i~dsrG~ptvev~v~t~~g~~g~a~vpsgastg~~ea~elrd~~~~y~gkgv~~av~~v~~~iap~LiG~d 85 (417)
T 3qn3_A 6 VIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTGSKEALELRDNDERFGGKGVLKAVANVNETIADEILGLD 85 (417)
T ss_dssp BEEEEEEEEEECTTSCEEEEEEEEETTCCEEEEECCCCBSSCSSSCBCCCCCSTGGGGTCCHHHHHHHHTHHHHHHTTSB
T ss_pred eeeEEEEEEEEcCCCCceEEEEEEECCCCEEEEecCCCCccccceeeeecCCCccccCccHHHHHHHHHHHHHHHHCCCC
Confidence 79999999999999999999999999999999999999999999999999999779999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcc
Q 043137 84 PTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGS 163 (445)
Q Consensus 84 ~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~ 163 (445)
|.+|++||+.|. .++++.+ ++.++.+|++||||||||+.||.+|+|||+||| |..+.++|+|++++++||.
T Consensus 86 ~~~~~~id~~m~-~~dgt~~-----k~~lg~nAi~aVs~Al~da~ak~~g~PLy~lLG---G~~~~~lPv~~~nvinGG~ 156 (417)
T 3qn3_A 86 AFNQTQLDDTLR-ELDGTNN-----YSNLGANATLGVSMATARAAAAALGMPLYRYLG---GANASILPVPMCNIINGGA 156 (417)
T ss_dssp TTCHHHHHHHHH-HHHCSSS-----CTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHH---GGGCCEECEEEEEEEECGG
T ss_pred ccCHHHHHHHHH-HhhccCC-----CCchhhhhHHHHHHHHHHHHHHHhCCcHHHHhC---CCCCcceeeeeeeeecCcc
Confidence 999999999999 7887755 678899999999999999999999999999999 9878899999999999999
Q ss_pred cCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCC
Q 043137 164 HAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYT 243 (445)
Q Consensus 164 ~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~ 243 (445)
|+++++++||+|++|.+..+++++++++.++|+++|..++.| |. .+++|++|+|.|++++.++.++.+++|+|++||+
T Consensus 157 ha~~~~~~qe~mi~P~ga~~~~ea~~~G~evy~~lK~~l~~k-g~-~t~vGdegg~ap~~~~~~e~l~~i~~Air~aGy~ 234 (417)
T 3qn3_A 157 HANNNVDFQEFMIMPFGFTSFKEALRSVCEIYAILKKELANS-GH-STALGDEGGFAPNLANNTEPIDLLMTCIKKAGYE 234 (417)
T ss_dssp GSSSSCCCSEEEEEECSCSSHHHHHHHHHHHHHHHHHHHHHT-TC-CCCBCTTSCBCCCCSSSSHHHHHHHHHHHHTTCT
T ss_pred cCCCcccHHHHhcCccchHHHHHHHHHhHHHHHHHHHHHHhc-Cc-ccccCCCCCcCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 998888999999999999999999999999999999988877 54 6789999999999888888999998999999987
Q ss_pred CCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCc
Q 043137 244 GKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKV 323 (445)
Q Consensus 244 ~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~v 323 (445)
+++.|++|+|++++|+++ +|+++ ++.||++++++++.+++++|++.||||||+++|+++|++|+++++.++
T Consensus 235 ~dv~l~vD~~ase~~~~g-~y~l~--------~~~~t~~eai~~~~~ll~~y~i~~IEdPl~~dD~e~~~~L~~~~g~~i 305 (417)
T 3qn3_A 235 NRVKIALDVASTEFFKDG-KYHME--------GKAFSSEALIERYVELCAKYPICSIEDGLAENDFEGWIKLTEKLGNKI 305 (417)
T ss_dssp TTEEEEEECCGGGGEETT-EEEET--------TEEECHHHHHHHHHHHHHHSCEEEEESSSCTTCHHHHHHHHHHHTTTS
T ss_pred CCceEEEECCchhhccCC-eeecC--------CCccCHHHHHHHHHHHHhhcceeEEecCCCcccHHHHHHHHHhhCCCC
Confidence 799999999999999887 79974 467899999999888899999999999999999999999999995559
Q ss_pred eEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCcc
Q 043137 324 QIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQI 403 (445)
Q Consensus 324 pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~ 403 (445)
||+|||++++++++++++++.+++|++|||++|+||||++++++++|+++|+.+|++|+++||++++++|||||++++|+
T Consensus 306 pI~gDE~~~tn~~~~~~~i~~~a~d~i~iKv~qiGGiTea~kia~lA~~~G~~v~vsh~sgEt~d~~iadlava~~~~~i 385 (417)
T 3qn3_A 306 QLVGDDLFVTNEDILREGIIKKMANAVLIKPNQIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQI 385 (417)
T ss_dssp EEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHHHHHHHTTCSEE
T ss_pred ceecCCcccCCHHHHHHHHHhCCCCEEEecCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHHHHHHHHhCCCcc
Confidence 99999998878999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhCc
Q 043137 404 KTGAPCRSERLAKYNQLLRIEEELGA 429 (445)
Q Consensus 404 ~~G~~~~~e~~~k~n~ll~i~~~l~~ 429 (445)
|.|+|+|+||++||||||||||||++
T Consensus 386 k~G~~~r~er~akyn~llriee~l~~ 411 (417)
T 3qn3_A 386 KTGALARGERTAKYNRLLEIEFESDE 411 (417)
T ss_dssp ECCCSCSHHHHHHHHHHHHHTTTCCE
T ss_pred ccCCCcchhHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999975
|
| >2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-90 Score=709.61 Aligned_cols=429 Identities=61% Similarity=0.961 Sum_probs=403.0
Q ss_pred EEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhhc--
Q 043137 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALA-- 80 (445)
Q Consensus 4 kI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~Li-- 80 (445)
.|++|++++|+||+|+|+|+|+|+|++| +|+|++|++++||.+|+.+++|+++. |.|+++.++++.|++.|+|.|+
T Consensus 1 ~I~~v~~r~i~dsrg~~tv~V~V~t~~G-~G~g~~psgastG~~ea~elrd~~~~~~~g~~v~~av~~v~~~iap~Li~~ 79 (436)
T 2al1_A 1 AVSKVYARSVYDSRGNPTVEVELTTEKG-VFRSIVPSGASTGVHEALEMRDGDKSKWMGKGVLHAVKNVNDVIAPAFVKA 79 (436)
T ss_dssp CCCEEEEEEEECTTSCEEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHH
T ss_pred CeeEEEEEEEEcCCCCcEEEEEEEECCc-eEEEeecccccCCcceeeeeccCccccccCccHHHHHHHHHHHHHHHHHHC
Confidence 3899999999999999999999999999 99999999999999999999998765 9999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCC--cceeeeeeEEe
Q 043137 81 GKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNK--NLVLPVPAFNV 158 (445)
Q Consensus 81 G~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~--~~~vp~~~~~~ 158 (445)
|+||.+|+.||+.|. .++++.+ .+.++.+|++||||||||+.||.+|+|||+|||++.|.. ++++|+|++++
T Consensus 80 G~d~~~~~~i~~~m~-~~dgt~~-----~~~lg~~Ai~aVd~Al~Da~ak~~g~PLy~lLG~l~G~~~~~~~lpvp~~n~ 153 (436)
T 2al1_A 80 NIDVKDQKAVDDFLI-SLDGTAN-----KSKLGANAILGVSLAASRAAAAEKNVPLYKHLADLSKSKTSPYVLPVPFLNV 153 (436)
T ss_dssp TCCTTCHHHHHHHHH-HHHCSTT-----STTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTCCCTTEEECEEEEEE
T ss_pred CCChhhHHHHHHHHH-HhcCCcc-----cchhHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcccCCCCcCceeeEEEEEe
Confidence 999999999999999 7777665 467889999999999999999999999999999777866 67899999999
Q ss_pred ecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHH
Q 043137 159 INGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIA 238 (445)
Q Consensus 159 ~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~ 238 (445)
++||.|+.+++++||+|++|.++.+++++++++.++|+++|..+|.|+|...+++|++|+|.|+++.+++.++.++++++
T Consensus 154 inGg~ha~~~~~~qefmi~p~~a~~~~ea~~~~~e~~~~lK~~l~~k~G~~a~~vGdegg~~p~~~~~~~~l~~i~~ai~ 233 (436)
T 2al1_A 154 LNGGSHAGGALALQEFMIAPTGAKTFAEALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIK 233 (436)
T ss_dssp EECGGGSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGSBCTTSCBCCCCSCHHHHHHHHHHHHH
T ss_pred ecCccccCCccccccceecCcccccHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccCcCCCccCHHHHHHHHHHHHH
Confidence 99999998889999999999999999999999999999999999989887667899999999999889999999999999
Q ss_pred HhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHH
Q 043137 239 KAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSE 318 (445)
Q Consensus 239 ~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~ 318 (445)
++|+++++.|++|+|++++|+++ +|+++|+++..+.|+.||++|+++++.+++++|+|.||||||+++|+++|++|+++
T Consensus 234 ~~G~~g~v~l~vD~aase~~~n~-~y~~~~~~~~~~~~~~~t~~eai~~~~~~l~~y~i~~iEdPl~~dD~~g~~~l~~~ 312 (436)
T 2al1_A 234 AAGHDGKVKIGLDCASSEFFKDG-KYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFAEDDWEAWSHFFKT 312 (436)
T ss_dssp HHTCTTTCEEEEECCGGGGEETT-EECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHTT
T ss_pred HcCCCcceEEEEechhhhhccCC-ceEEecccccccccccCCHHHHHHHHHHHHHhCCcEEEECCCCCcCHHHHHHHHhc
Confidence 99975479999999999999877 89887766655668999999999999999999999999999999999999999999
Q ss_pred hCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhh
Q 043137 319 VGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGL 398 (445)
Q Consensus 319 ~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~ 398 (445)
++ +||+|||++++++++++++++.+++|++|||++|+||||++++++++|+++|+.+|++|+++||++++++|||+|+
T Consensus 313 ~~--ipI~gDE~~vt~~~~~~~~i~~~a~d~i~ikv~qiGGitea~~ia~lA~~~g~~~~~sh~sgEt~~~~iA~lava~ 390 (436)
T 2al1_A 313 AG--IQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESIKAAQDSFAAGWGVMVSHRSGETEDTFIADLVVGL 390 (436)
T ss_dssp CC--SEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHHHT
T ss_pred CC--CeEEECCcccCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHh
Confidence 77 9999999977889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCchhHHHHHHHHHHHHHhCccccccccccCCCC
Q 043137 399 ATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFRAPV 442 (445)
Q Consensus 399 ~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~~~~~~ 442 (445)
.++|+|.|.|+|+||++||||||||||+|++.+.|.+.+|++|.
T Consensus 391 ~~~~ik~G~~~r~er~~kyn~ll~ie~~l~~~~~~~~~~~~~~~ 434 (436)
T 2al1_A 391 RTGQIKTGAPARSERLAKLNQLLRIEEELGDNAVFAGENFHHGD 434 (436)
T ss_dssp TCSEEECCCSCSHHHHHHHHHHHHHHHHHGGGEEECGGGCTTGG
T ss_pred cCCcCcCCCCccchHHHHHHHHHHHHHHhccccEeCccccCCCC
Confidence 99999999999999999999999999999999999999999985
|
| >2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-90 Score=704.75 Aligned_cols=428 Identities=71% Similarity=1.123 Sum_probs=401.3
Q ss_pred EEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCC-CCCCccHHHHHHHHHHhHhhhhc--
Q 043137 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGS-DYLGKGVSKAVSNVNAIIGPALA-- 80 (445)
Q Consensus 4 kI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~-~y~~~~~~~a~~~i~~~l~p~Li-- 80 (445)
.|++|++++|+||+|+|+|+|+|+||+|+ |||++|+++|||.+|+.+++|+++ .|.|+++.++++.|++.|+|.|+
T Consensus 1 ~I~~v~~r~i~dsrg~~tv~V~V~t~~G~-G~~~~psgastG~~Ea~el~d~~~~~~~g~~v~~av~~v~~~iap~Li~~ 79 (439)
T 2akz_A 1 SIEKIWAREILDSRGNPTVEVDLYTAKGL-FRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHINSTIAPALISS 79 (439)
T ss_dssp CCCEEEEEEEECTTSCEEEEEEEEETTEE-EEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHH
T ss_pred CeeEEEEEEEEcCCCCceEEEEEEECCCc-eEeeccCCCceeEEEEeeccCCCccccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 48999999999999999999999999999 999999999999999999999765 59999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeec
Q 043137 81 GKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVIN 160 (445)
Q Consensus 81 G~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~ 160 (445)
|+||.+++.||+.|. .++++.+ .+.++.+|++||||||||+.||.+|+|||+|||.++|..+.++|+|++++++
T Consensus 80 G~d~~~~~~i~~~m~-~~dgt~~-----~~~lg~nAi~aVs~Al~Da~ak~~g~PLy~lLG~~~G~~~~~lpvp~~~~in 153 (439)
T 2akz_A 80 GLSVVEQEKLDNLML-ELDGTEN-----KSKFGANAILGVSLAVCKAGAAERELPLYRHIAQLAGNSDLILPVPAFNVIN 153 (439)
T ss_dssp CCCTTCHHHHHHHHH-HHHCSTT-----CTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCSCCBCEEEEEEEE
T ss_pred CCChhhHHHHHHHHH-HhcCCcc-----cchHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcccCCCCceeEEEEEEEec
Confidence 999999999999999 7777765 4678899999999999999999999999999998888777789999999999
Q ss_pred CcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHh
Q 043137 161 GGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240 (445)
Q Consensus 161 gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~ 240 (445)
||.|+.+++++||+|++|.++.+++++++++.++|+++|..+|.|+|...+++|++|+|.|+++.+.+.++.++++++++
T Consensus 154 Gg~ha~~~~~~qefmi~p~~a~~~~ea~~~~~e~~~~lK~~lk~k~G~~~~~vGdegg~~p~~~~~~e~l~~i~~ai~~~ 233 (439)
T 2akz_A 154 GGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKA 233 (439)
T ss_dssp CGGGSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGCBCTTSCBCCSCCCHHHHHHHHHHHHHHH
T ss_pred CccccccccccccceecCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccCcCCCcccHHHHHHHHHHHHHHc
Confidence 99999888999999999999999999999999999999999999988766789999999999888999999999999989
Q ss_pred CCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhC
Q 043137 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVG 320 (445)
Q Consensus 241 g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~ 320 (445)
|+++++.|++|+|++++|+++ +|++++..| .+.|+.||++++++++.+++++|+|.|||||++++|+++|++|+++++
T Consensus 234 G~~g~v~l~vD~a~se~~~~g-~y~l~~~~~-~~~~~~~t~~e~~~~~~~ll~~y~i~~IEdPl~~dD~~g~~~L~~~~~ 311 (439)
T 2akz_A 234 GYTEKIVIGMDVAASEFYRDG-KYDLDFKSP-TDPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQDDWAAWSKFTANVG 311 (439)
T ss_dssp TCTTTCEEEEECCGGGGEETT-EECTTTTSS-CCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHHTCS
T ss_pred CCccceEEEEechHhhhccCC-eeEEecccc-ccccccCCHHHHHHHHHHHHHhCCCcEEECCCCcccHHHHHHHHhCCC
Confidence 975479999999999999877 788765444 345788999999999999999999999999999999999999999977
Q ss_pred CCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcC
Q 043137 321 EKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLAT 400 (445)
Q Consensus 321 ~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~ 400 (445)
+||+|||++++++++++++++.+++|++|||++|+||||++++++++|+++|+.+|++|+++||++++++|||+|+.+
T Consensus 312 --ipI~gDE~~vt~~~~~~~~i~~~a~d~i~iKv~qiGGitea~~ia~lA~~~g~~~~~sh~~gEt~~~~iA~lava~~~ 389 (439)
T 2akz_A 312 --IQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCT 389 (439)
T ss_dssp --SEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHHHHTC
T ss_pred --CEEEeCCCccCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHCCCeEEeecCCCccHHHHHHHHHHHhcC
Confidence 999999987788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCchhHHHHHHHHHHHHHhCccccccccccCCCC
Q 043137 401 GQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFRAPV 442 (445)
Q Consensus 401 ~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~~~~~~ 442 (445)
+|+|.|.|+|+||++||||||||||+|++++.|.+.+||+|.
T Consensus 390 ~~ik~G~~~r~er~~kyn~llriee~l~~~~~~~~~~~~~~~ 431 (439)
T 2akz_A 390 GQIKTGAPCRSERLAKYNQLMRIEEELGDEARFAGHNFRNPS 431 (439)
T ss_dssp SEEECCCSCSHHHHHHHHHHHHHHHHHGGGCCBCGGGTTCGG
T ss_pred CcccCCCCccchhHHHHHHHHHHHHHhccCcEecCccCCCcc
Confidence 999999999999999999999999999999999999999984
|
| >2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A 2pu0_A 2pu1_A* 1oep_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-84 Score=667.27 Aligned_cols=426 Identities=59% Similarity=0.941 Sum_probs=388.4
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCC-CCCCccHHHHHHHHHHhHhhhhcC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGS-DYLGKGVSKAVSNVNAIIGPALAG 81 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~-~y~~~~~~~a~~~i~~~l~p~LiG 81 (445)
|||++|++++|.++.++|+|+|+|+|++| +|||++|++++||.+|+.+++|+++ .|.|+++..+++.|++.|+|.|+|
T Consensus 4 m~I~~i~~~~v~~~~~~p~v~V~v~td~G-~G~ge~~sgastg~~ea~elrd~~~~~~~g~~v~~av~~v~~~iap~LiG 82 (432)
T 2ptz_A 4 MTIQKVHGREVLDSRGNPTVEVEVTTEKG-VFRSAVPSGASTGVYEACELRDGDKKRYVGKGCLQAVKNVNEVIGPALIG 82 (432)
T ss_dssp TSCCEEEEEEEECTTSCEEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTTGGGTCCHHHHHHHHHTHHHHHTT
T ss_pred CEEEEEEEEEEecCCCCcEEEEEEEeCCc-EEEEEEecccccCcceeeeeccCcccccccccHHHHHHHHHHHHHHHHCC
Confidence 79999999999999999999999999999 9999999999999999999999875 499999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecC
Q 043137 82 KDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVING 161 (445)
Q Consensus 82 ~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~g 161 (445)
+||.+++.||+.|. .++++.+ ++.++.+|++||||||||+.||.+|+|||+|||.++|..+.++|+|+|++++|
T Consensus 83 ~d~~~~~~i~~~m~-~~~~~~~-----~~~~~~~Ai~aVd~AlwD~~ak~~g~Ply~lLG~~~G~~~~~~pvp~~~~i~g 156 (432)
T 2ptz_A 83 RDELKQEELDTLML-RLDGTPN-----KGKLGANAILGCSMAISKAAAAAKGVPLYRYLASLAGTKELRLPVPCFNVING 156 (432)
T ss_dssp CCTTCHHHHHHHHH-HHHCSTT-----CTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHTCSCCEECEEEEEEEEC
T ss_pred CChhhHHHHHHHHH-HhhCCCC-----cchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhccccCCCCcCCceeEEEEecC
Confidence 99999999999998 6776654 46788899999999999999999999999999988887666799999999999
Q ss_pred cccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhC
Q 043137 162 GSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAG 241 (445)
Q Consensus 162 g~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g 241 (445)
|.|+.+.++++|+|++|.++.++++++++..++|+++|..++.|+|...+.++++|+|.|+++..++.++.+.+++|++|
T Consensus 157 g~~a~~~~~~qe~mi~p~~~~~~~ea~~~~~eg~~~lK~~l~~k~G~~at~vgdegg~~p~~~~~~~~l~~i~~Air~~G 236 (432)
T 2ptz_A 157 GKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAG 236 (432)
T ss_dssp STTSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGCCBCTTSSBCCSCCCTTTHHHHHHHHHHHTT
T ss_pred cccccCCCCHHHhcccCcccCCHHHHHHHHHHHHHHHHHHhHhhcCCCccccCCccCcCCCcccHHHHHHHHHHHHHHhC
Confidence 98877778899999999999999999999999999999888888886657899999999988777788887778999888
Q ss_pred CCCCeEEEEeccccccccCCc-eeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhC
Q 043137 242 YTGKVVIGMDVAASEFYGSDK-TYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVG 320 (445)
Q Consensus 242 ~~~~i~l~vD~~a~~~~~~~~-~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~ 320 (445)
+++++.|++|+|++++|+..+ +|++.+..+ .++.|++.++++++.+++++|++.|||||++++|+++|++|+++++
T Consensus 237 ~~g~v~l~vDan~~~~~~~~~~~y~~~~~~~---~~~~~~a~~~~~~~~~~l~~y~i~~iEdPl~~~D~~g~~~l~~~~g 313 (432)
T 2ptz_A 237 HRGKFAICMDCAASETYDEKKQQYNLTFKSP---EPTWVTAEQLRETYCKWAHDYPIVSIEDPYDQDDFAGFAGITEALK 313 (432)
T ss_dssp CTTSCEEEEECCGGGGEETTTTEEETTTTSS---SCCEECHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHHHTT
T ss_pred CcCCcEEEEECcccccccccCceeEeecccc---ccCCCCHHHHHHHHHHHHHhCCceEEECCCCcchHHHHHHHHHhcC
Confidence 544799999999999887522 687632100 0356899999999989999999999999999999999999999994
Q ss_pred CCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcC
Q 043137 321 EKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLAT 400 (445)
Q Consensus 321 ~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~ 400 (445)
.++||+|||++++++++++++++.+++|++|||++|+||||++++++++|+++|+++|++|+++||++++++|||+|+++
T Consensus 314 ~~ipI~gDe~~v~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~i~~lA~~~g~~v~~~h~~get~~~~~a~lava~~~ 393 (432)
T 2ptz_A 314 GKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKINQIGTISEAIASSKLCMENGWSVMVSHRSGETEDTYIADLVVALGS 393 (432)
T ss_dssp TTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHHHHTC
T ss_pred CCCeEEecCcccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEEecCCCCccHHHHHHHHHHHhCC
Confidence 44999999987789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCchhHHHHHHHHHHHHHhCcccccccccc
Q 043137 401 GQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKF 438 (445)
Q Consensus 401 ~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~~ 438 (445)
+|+|.|.|+++||++|||||||||++|++.+.|.++.|
T Consensus 394 ~~ik~G~~~r~er~~kyn~llrie~~l~~~~~~~~~~~ 431 (432)
T 2ptz_A 394 GQIKTGAPCRGERTAKLNQLLRIEEELGAHAKFGFPGW 431 (432)
T ss_dssp SEEECCSSCSHHHHHHHHHHHHHHHHHCTTCEESCGGG
T ss_pred CCCCCCCCccchhHHHHHHHHHHHHHhccCcCccCCCC
Confidence 99999999999999999999999999999999999877
|
| >2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-81 Score=643.30 Aligned_cols=419 Identities=58% Similarity=0.908 Sum_probs=387.7
Q ss_pred ceEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcC
Q 043137 2 AITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAG 81 (445)
Q Consensus 2 ~mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG 81 (445)
.|||++|+++.+.++.++++++|+|+||+|++|+|++|++.+||.+|+.+++|+++.|.++++.+++..|++.|+|.|+|
T Consensus 8 ~MkI~~i~~~~v~~s~g~~~v~V~v~td~G~~G~G~~~~~~~tg~~ea~~~~d~~~~~~g~~~~~~~~~i~~~l~p~LiG 87 (427)
T 2pa6_A 8 RFEIKDIVAREVIDSRGNPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEKRFGGKGVLMAVENVNSIIRPEILG 87 (427)
T ss_dssp GGBEEEEEEEEEECTTSCEEEEEEEEETTCCEEEEECCCCCSSCSSSCCCCCCCSSGGGGTCCHHHHHHHHHTHHHHHTT
T ss_pred CCEEEEEEEEEEEcCCCCceEEEEEEECCCCeeeEecccccccCcceeEeecCCccccccccHHHHHHHHHHHHHHHHcC
Confidence 48999999999999989999999999999999999999999999999999999988899999999999999899999999
Q ss_pred CCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecC
Q 043137 82 KDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVING 161 (445)
Q Consensus 82 ~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~g 161 (445)
+||.+++.+|+.|. .++++.+ ++.++.+|++|||+||||+.||.+|+|||+||| |..++++|+|++++++|
T Consensus 88 ~d~~~~~~i~~~l~-~~~~~~~-----~~~~~~~A~~avd~AlwDl~ak~~g~Pl~~lLG---g~~~~~vp~~~~~~~~g 158 (427)
T 2pa6_A 88 YDARMQREIDTIMI-ELDGTPN-----KSRLGANAILAVSLAVAKAAAATAKIPLYKYLG---GFNSYVMPVPMMNVING 158 (427)
T ss_dssp CBTTCHHHHHHHHH-HHHCSTT-----CTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHH---CSCCCEECEECEEEEEC
T ss_pred CCHHHHHHHHHHHH-HhhCCCc-----cccchHHHHHHHHHHHHHHHHHHhCCcHHHHhc---Cccccccccchhccccc
Confidence 99999999999998 5655543 345677999999999999999999999999999 97777899999888888
Q ss_pred cccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhC
Q 043137 162 GSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAG 241 (445)
Q Consensus 162 g~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g 241 (445)
|.|+++.++++++|+.|.++..++++.+...++|+++|..+|.|+|....+++++|++.|+++.+.++++++|++++++|
T Consensus 159 g~~~~~~l~~~~~~~~p~~~~~~~~a~~~~~~g~~~lK~~l~~K~G~~~~~vg~~gg~~~~~~~d~~~v~~vreav~~~G 238 (427)
T 2pa6_A 159 GKHAGNDLDLQEFMIMPVGATSISEAVRMGSEVYHVLKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLLTESVKKAG 238 (427)
T ss_dssp STTTSSSCSSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCTTSCCBCTTSCBCCSCCSHHHHHHHHHHHHHHHT
T ss_pred cccccCCcCHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcCCcCCCccchHHHHHHHHHHHHHhC
Confidence 88877778899999999888899999999999999999888888887667888999998888888999999999999888
Q ss_pred CCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCC
Q 043137 242 YTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGE 321 (445)
Q Consensus 242 ~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~ 321 (445)
+++++.|++|+|++++|+|+ +|+++ |+.||++++++++.+++++|++.|||||++++|+++|++|+++++
T Consensus 239 ~~~~~~L~vDa~as~~~~n~-~~~~~--------n~~~~~~~ai~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~- 308 (427)
T 2pa6_A 239 YEDEVVFALDAAASEFYKDG-YYYVE--------GKKLTREELLDYYKALVDEYPIVSIEDPFHEEDFEGFAMITKELD- 308 (427)
T ss_dssp CTTTCEEEEECCGGGGEETT-EEEET--------TEEECHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHHHSS-
T ss_pred CCCCcEEEEEcchhccccCC-ceeec--------CCCCCHHHHHHHHHHHHhhCCCcEEEcCCChhhHHHHHHHHhhCC-
Confidence 43379999999999999877 78874 788999999999877899999999999999999999999999988
Q ss_pred CceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCC
Q 043137 322 KVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATG 401 (445)
Q Consensus 322 ~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~ 401 (445)
+||++||++++++++++++++.+++|++|||++|+||||++++++++|+++|++++++|+++||.+++++|||++..++
T Consensus 309 -ipIa~dE~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~ia~lA~~~g~~~~~~h~~~es~i~~aa~l~~a~~~~ 387 (427)
T 2pa6_A 309 -IQIVGDDLFVTNVERLRKGIEMKAANALLLKVNQIGTLSEAVDAAQLAFRNGYGVVVSHRSGETEDTTIADLSVALNSG 387 (427)
T ss_dssp -SEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHTTTCEEEEECCSSCCSCCHHHHHHHHTTCS
T ss_pred -CeEEeCccccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCChHHHHHHHHHHhCCC
Confidence 9999999877889999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhCccccccccccCCC
Q 043137 402 QIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFRAP 441 (445)
Q Consensus 402 ~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~~~~~ 441 (445)
+++.|.|+++||++|||||||||++|++ +.|.+.+|+.|
T Consensus 388 ~~~~G~~~~~er~~kyn~llri~~~~~~-~~~~~~~~~~~ 426 (427)
T 2pa6_A 388 QIKTGAPARGERTAKYNQLIRIEQELGL-SKYAGRNFRCP 426 (427)
T ss_dssp EEECCSSCSHHHHHHHHHHHHHHHHSSS-CEECGGGCSCC
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHhcc-cccccccccCC
Confidence 9999999999999999999999999999 99999889887
|
| >2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-81 Score=641.13 Aligned_cols=422 Identities=53% Similarity=0.836 Sum_probs=385.0
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCC-CCCCccHHHHHHHHHHhHhhhhcC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGS-DYLGKGVSKAVSNVNAIIGPALAG 81 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~-~y~~~~~~~a~~~i~~~l~p~LiG 81 (445)
|||++|+++.|++++|+++|+|+|+||+|++|.+++|++.++|.+|+.+++|+++ +|.|+++.++++.|++.|+|.|+|
T Consensus 1 ~~I~~v~~~~v~~srg~~~v~V~v~td~G~~Gge~~p~~~~~G~~ea~e~rd~~~~~y~g~~~~~~~~~i~~~l~p~LiG 80 (431)
T 2fym_A 1 SKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIG 80 (431)
T ss_dssp CBEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCCCCSSCSSSCCCCCCCCTTSGGGTCCHHHHHHHHTHHHHHHTT
T ss_pred CeeEEEEEEEEEcCCCCeeEEEEEEECCCCccceecCcccccCcccceeccCCcccccccccHHHHHHHHHHHHHHHHcC
Confidence 7999999999999999999999999999999944788889999999999999775 499999999999999889999999
Q ss_pred CCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce----eeeeeEE
Q 043137 82 KDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV----LPVPAFN 157 (445)
Q Consensus 82 ~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~----vp~~~~~ 157 (445)
+||.+++.||+.|. .++++++ .+.++.+|++||||||||+.||.+|+|||+||| |..+.. +|+|+|+
T Consensus 81 ~d~~~~~~i~~~l~-~~~g~~~-----~~~~g~~A~~avd~AlwD~~ak~~g~Pl~~lLG---G~~~~~~~~~~pv~~~~ 151 (431)
T 2fym_A 81 KDAKDQAGIDKIMI-DLDGTEN-----KSKFGANAILAVSLANAKAAAAAKGMPLYEHIA---ELNGTPGKYSMPVPMMN 151 (431)
T ss_dssp SBTTCHHHHHHHHH-HHHCSTT-----CTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHH---HHTTCTTCCCCCEECEE
T ss_pred CCHHHHHHHHHHHH-HhhCCCc-----ccchhHHHHHHHHHHHHHHHHHHhCCcHHHHhc---CcccccccccccceeEe
Confidence 99999999999999 6776654 466788999999999999999999999999999 865555 9999999
Q ss_pred eecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHH
Q 043137 158 VINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAI 237 (445)
Q Consensus 158 ~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av 237 (445)
+++||.|+++.++++++|++|.++..++++++...++|+++|..++.+ |. ..++|++|+|.|+++.+.++++++|+++
T Consensus 152 ~~~gg~~~~~~l~~~~~mi~p~~~~~~~~a~~~~~~g~~~lK~~l~~~-g~-~~kvG~~gg~~~~~~~d~~~l~~vreai 229 (431)
T 2fym_A 152 IINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAK-GM-NTAVGDEGGYAPNLGSNAEALAVIAEAV 229 (431)
T ss_dssp EEECGGGSSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHT-TC-CCCBCTTSCBCCCCSSHHHHHHHHHHHH
T ss_pred eccCccccccccCcchhcccCccchhHHHHHHHHHHHHHHHHHHHHhc-Cc-ccccCcccCCCCCccchHHHHHHHHHHH
Confidence 999999887778899999999888899999999999999999888866 53 2678889999999999999999999999
Q ss_pred HHhCCC-C-CeEEEEeccccccccCCceeeecccCCCCCCC-CccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHH
Q 043137 238 AKAGYT-G-KVVIGMDVAASEFYGSDKTYDLNFKEENNDGS-QKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAK 314 (445)
Q Consensus 238 ~~~g~~-~-~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~-~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~ 314 (445)
+++|++ + ++.|++|++++++|+++ +|++.. .| +.||.+++++++.++.++|++.|||||++++|+++|++
T Consensus 230 ~~~g~~~G~dv~l~vDaaas~~~~~~-~Y~~~~------~n~~~~t~~~ai~~~~~L~~~~~i~~iEePl~~~d~~~~~~ 302 (431)
T 2fym_A 230 KAAGYELGKDITLAMDCAASEFYKDG-KYVLAG------EGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAY 302 (431)
T ss_dssp HHTTCCBTTTBEEEEECCGGGGEETT-EEEEGG------GTTEEECHHHHHHHHHHHHHHSCEEEEESCSCTTCHHHHHH
T ss_pred HHhccCCCCccEEEEeechhhccccC-ceeecc------CCCCCCCHHHHHHHHHHHHHhCCceEEECCCCcccHHHHHH
Confidence 999987 4 79999999999999877 798752 26 88999999999776544599999999999999999999
Q ss_pred HHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHH
Q 043137 315 LTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADL 394 (445)
Q Consensus 315 L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~l 394 (445)
|+++++.++||++||++++++++++++++.+++|++|||++|+||||++++++++|+++|+++|++|+++||.+++++||
T Consensus 303 l~~~~~~~ipIa~dEl~~~~~~~~~~~i~~~a~d~i~ik~~~~GGite~~~i~~~A~~~g~~~~~~h~~get~~~~~a~l 382 (431)
T 2fym_A 303 QTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADL 382 (431)
T ss_dssp HHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECGGGTCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHHHH
T ss_pred HHHHhCCCCeEEeCCcccCCHHHHHHHHHhCCCCEEEECccccCCHHHHHHHHHHHHHCCCeEEEeCCCCCchHHHHHHH
Confidence 99999334999999944688999999999999999999999999999999999999999999999999889999999999
Q ss_pred HhhhcCCccccCCCCCchhHHHHHHHHHHHHHhCccccccc-cccCCCC
Q 043137 395 SVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAG-AKFRAPV 442 (445)
Q Consensus 395 a~a~~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~-~~~~~~~ 442 (445)
|+++.+++++.|.|+++||++|||||||||++|++++.|.+ .+|+.|.
T Consensus 383 a~a~~~~~i~~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~~~~~~ 431 (431)
T 2fym_A 383 AVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA 431 (431)
T ss_dssp HHHTTCEEEECCCSCSHHHHHHHHHHHHHHHHHGGGSCCCGGGGSTTCC
T ss_pred HHhcCCCccccCCCccchHHHHHHHHHHHHHHhccCceecChhhccCCC
Confidence 99999999999999999999999999999999999999998 7899873
|
| >1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-79 Score=633.55 Aligned_cols=418 Identities=52% Similarity=0.836 Sum_probs=377.3
Q ss_pred EEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhhcCC
Q 043137 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGK 82 (445)
Q Consensus 4 kI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~LiG~ 82 (445)
.|++|++|+|+||+|+++|+|+|+||+|++|.+++|++.+||.+|+.+++|+++. |.|+++..++..|++.|+|.|+|+
T Consensus 13 ~i~~~~~r~i~dsrg~~~v~V~V~td~G~~Gge~~p~~~~tG~~ea~elrd~~~~~~~g~~v~~a~~~i~~~l~p~LiG~ 92 (444)
T 1w6t_A 13 IITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLGTQKAVDNVNNIIAEAIIGY 92 (444)
T ss_dssp BEEEEEEEEEECTTSCEEEEEEEEETTCCEEEEECCCC---CCSSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHTTS
T ss_pred hcceeEEEEEEcCCCCceEEEEEEECCCCEeeEecccccccccceeeeeccCcccccccccHHHHHHHHHHHHHHHHcCC
Confidence 7999999999999999999999999999999447788899999999999998764 899999999999998999999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCc
Q 043137 83 DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGG 162 (445)
Q Consensus 83 d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg 162 (445)
||.+++.||+.|. .++++.+ .+.++.+|++||||||||+.||.+|+|||+||| |..++++|+|++++++||
T Consensus 93 d~~~~~~i~~~l~-~~~g~~~-----~~~~g~~A~~avd~AlwD~~ak~~g~Pl~~lLG---G~~~~~vp~~~~~~~~gg 163 (444)
T 1w6t_A 93 DVRDQQAIDRAMI-ALDGTPN-----KGKLGANAILGVSIAVARAAADYLEIPLYSYLG---GFNTKVLPTPMMNIINGG 163 (444)
T ss_dssp BTTCHHHHHHHHH-HHHCSTT-----CTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHH---CTTCCEECEECEEEEECG
T ss_pred CHHHHHHHHHHHH-HhhCCCc-----cccchhHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCCcccccccccceeccc
Confidence 9999999999998 6766654 456778999999999999999999999999999 977788999998888898
Q ss_pred ccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCC
Q 043137 163 SHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGY 242 (445)
Q Consensus 163 ~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~ 242 (445)
.++++.+++||+|++|.++..++++++...++|+++|..+|.| |. ..++|++|+|.++++.+.++++++|++++++||
T Consensus 164 ~~a~~~l~~qe~mi~p~~~~~~~~a~~~~~~g~~~lK~~lk~k-g~-~~kvG~~gg~~~~~~~d~~~l~avreav~~agy 241 (444)
T 1w6t_A 164 SHSDAPIAFQEFMILPVGAPTFKEALRYGAEIFHALKKILKSR-GL-ETAVGDEGGFAPRFEGTEDGVETILAAIEAAGY 241 (444)
T ss_dssp GGCSSSCCCSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHT-TC-CCCBCTTSCBCCCCSSHHHHHHHHHHHHHHTTC
T ss_pred cccccccchhHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhc-CC-ccccCCCCCCCCchHhHHHHHHHHHHHHHHhcc
Confidence 8877778999999999888899999999999999999888877 53 377888999999998899999999999999988
Q ss_pred CC--CeEEEEecccccccc--CCceeeecccCCCCCCCCc-----cCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHH
Q 043137 243 TG--KVVIGMDVAASEFYG--SDKTYDLNFKEENNDGSQK-----ISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYA 313 (445)
Q Consensus 243 ~~--~i~l~vD~~a~~~~~--~~~~y~~~~~~~~~~~~~~-----~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~ 313 (445)
.+ ++.|++|++++++|+ ++ +|+++ + |+. ||++++++++.++.++|++.|||||++++|+++|+
T Consensus 242 ~pG~dv~L~vDaaas~~~~~~n~-~y~~~-~------n~~~~~~~~t~~eai~~~~~l~~~~~i~~iEePl~~~d~~~~~ 313 (444)
T 1w6t_A 242 VPGKDVFLGFDCASSEFYDKERK-VYDYT-K------FEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGMDENDWDGWK 313 (444)
T ss_dssp CBTTTBEEEEECCGGGGBC--CC-CEETH-H------HHCTTCCEECHHHHHHHHHHHHHHSCEEEEESCSCTTCHHHHH
T ss_pred CCCCCcEEEEEccchhcccccCC-ceeec-c------ccCcccCCCCHHHHHHHHHHHHHhCCcEEEECCCChhhHHHHH
Confidence 63 799999999999996 45 67652 1 234 89999999987766679999999999999999999
Q ss_pred HHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHH
Q 043137 314 KLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIAD 393 (445)
Q Consensus 314 ~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~ 393 (445)
+|+++++.++||++||++++++++++++++.+++|++|||++|+||||++++++++|+++|++++++|+++||.+++++|
T Consensus 314 ~l~~~~~~~ipIa~dE~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~ia~lA~~~g~~v~~~h~~get~i~~~a~ 393 (444)
T 1w6t_A 314 ALTERLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTETFEAIEMAKEAGYTAVVSHRSGETEDSTIAD 393 (444)
T ss_dssp HHHHHHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHHH
T ss_pred HHHHhhCCCCeEEeCCcccCCHHHHHHHHHcCCCCEEEEcccccCCHHHHHHHHHHHHHCCCeEEecCCCCCchHHHHHH
Confidence 99999933399999998568899999999999999999999999999999999999999999999999888999999999
Q ss_pred HHhhhcCCccccCCCCCchhHHHHHHHHHHHHHhCccccccc-cccCC
Q 043137 394 LSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAG-AKFRA 440 (445)
Q Consensus 394 la~a~~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~-~~~~~ 440 (445)
||++++++++++|+|+++||++|||||||||++|+++..|.+ .+|++
T Consensus 394 lava~~~~~i~~G~~~r~er~~kyn~ll~ie~~l~~~~~~~~~~~~~~ 441 (444)
T 1w6t_A 394 IAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGEVAEYRGLKSFYN 441 (444)
T ss_dssp HHHHTTCCEEECCCSSSHHHHHHHHHHHHHHHHHGGGCEECGGGGCTT
T ss_pred HHHhcCCCcccCCCCcccccHHHHHHHHHHHHHhccccccCChhhhcc
Confidence 999999999999999999999999999999999999999998 77865
|
| >4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-50 Score=416.36 Aligned_cols=312 Identities=18% Similarity=0.258 Sum_probs=233.1
Q ss_pred ceEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcC
Q 043137 2 AITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAG 81 (445)
Q Consensus 2 ~mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG 81 (445)
+++||+|++..+... ..+.|+|||+||+|++|||++... |+ ..++...|++.|+|.|+|
T Consensus 25 ~~~It~v~~~~v~~~-~~~~vlV~v~Td~G~~G~GEa~~~-----------------~~---~~~~~~~i~~~lap~LiG 83 (421)
T 4hnl_A 25 PTIITDVKSFAIKPD-RHNLVVVKVETNKGISGLGCSTFQ-----------------FR---PLAVKTVVDEYLRPLLMG 83 (421)
T ss_dssp CCBEEEEEEEEECSS-SSCEEEEEEEETTSCCEEEECCCT-----------------TS---HHHHHHHHHHTHHHHHTT
T ss_pred CceEEEEEEEEECCC-CceEEEEEEEECCCCEEEEeccCC-----------------CC---HHHHHHHHHHHHHHHHCC
Confidence 468999999888643 445789999999999999976431 21 244455688889999999
Q ss_pred CCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecC
Q 043137 82 KDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVING 161 (445)
Q Consensus 82 ~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~g 161 (445)
+||.+++++|+.|. .. .. |+.+.+..+|+|||||||||+.||.+|+|||+||| |+.++++|++.+ ..+
T Consensus 84 ~dp~~ie~i~~~~~-~~-~~-----~~~~~~~~~A~said~ALwDl~gK~~g~Pl~~LLG---G~~r~~v~~y~~--~~~ 151 (421)
T 4hnl_A 84 RDANEIEDIWQVMN-VN-SY-----WRNGPITNNAISGIDMALWDIKGQLADMPLYQLLG---GKARTAIPAYTH--AVA 151 (421)
T ss_dssp CBTTCHHHHHHHHH-HT-TS-----SCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSSSCEEEEEE--EEE
T ss_pred CChhhHHHHHHHHH-hh-cc-----ccCCchHHHHHHHHHHHHHHHHHHHhCCCHHHhcC---CccCcccceecc--cCC
Confidence 99999999999997 32 11 22345667899999999999999999999999999 988888887543 211
Q ss_pred cccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcc----cCCCCCCCC-------CccChHHHH
Q 043137 162 GSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATN----VGDEGGFAP-------NIQENKEGL 230 (445)
Q Consensus 162 g~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~----~~~~g~~~~-------~~~~~~~~l 230 (445)
. + +++..+++.+...++|+++| .|.|..... ......+.. .++.+.+++
T Consensus 152 ~-------~---------~~~~~~~a~~~~~~G~~~~K----~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v 211 (421)
T 4hnl_A 152 D-------N---------LDDLYHEIDRFLAAGYRYIR----CQLGFYGGNPSQLQTPEEPISGSYFDQTDYMETTLKMF 211 (421)
T ss_dssp S-------S---------HHHHHHHHHHHHHTTCSEEE----EEESCCCCCGGGSCCCSSCCSSEECCHHHHHHHHHHHH
T ss_pred C-------C---------HHHHHHHHHHHHHhhHHHHh----hccccccCCchhccccccccccccccchhHHHHHHHHH
Confidence 1 1 12234555555556676654 455532110 000111110 012233344
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHH
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWE 310 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~ 310 (445)
+++|++ +| +++.|++|+ |+.||.++++++ .+.+++|++.|||||++++|++
T Consensus 212 ~avR~a---~G--~~~~l~vDa-----------------------n~~~~~~~A~~~-~~~l~~~~i~~iEeP~~~~d~~ 262 (421)
T 4hnl_A 212 AAIKEK---YG--NQFQMLHDV-----------------------HERLHPNQAIQF-AKAAEPYQLFFLEDILPPDQSH 262 (421)
T ss_dssp HHHHHH---HT--TSSEEEEEC-----------------------TTCSCHHHHHHH-HHHHGGGCCSEEECCSCGGGGG
T ss_pred HHHHHH---hC--CCceEeccc-----------------------cccCCHHHHHHH-HHHhhhhhhcccccCCcccchH
Confidence 444444 46 689999999 367899999997 5678999999999999999999
Q ss_pred HHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCC-Chhh
Q 043137 311 HYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGE-TEDT 389 (445)
Q Consensus 311 ~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~e-t~~~ 389 (445)
+|++|+++++ +||++||+. .++++++++++.+++|++|||++++||||++++++++|+++|+++++ |++.+ +.++
T Consensus 263 ~~~~l~~~~~--ipIa~dE~~-~~~~~~~~~i~~~a~d~v~~d~~~~GGite~~~ia~~A~~~gi~v~~-h~~~~~s~i~ 338 (421)
T 4hnl_A 263 WLTQLRSQSA--TPIATGELF-NNPMEWQELVKNRQIDFMRAHVSQIGGITPALKLAHFCDAMGVRIAW-HTPSDISPVG 338 (421)
T ss_dssp GHHHHHTTCC--CCEEECTTC-CSGGGTHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHHHHTTCEECC-CCCSSSCHHH
T ss_pred HHHHHHhcCC--CCeecCcce-ehhHHHHHHHhcCCceEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEE-eCCcchhHHH
Confidence 9999999998 999999985 66999999999999999999999999999999999999999999855 54554 5454
Q ss_pred --HHHHHHhhhc
Q 043137 390 --FIADLSVGLA 399 (445)
Q Consensus 390 --~~~~la~a~~ 399 (445)
+.+||++++.
T Consensus 339 ~aa~~hl~aa~~ 350 (421)
T 4hnl_A 339 LAVNTHLNIHLH 350 (421)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHhCC
Confidence 4556666554
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-51 Score=419.38 Aligned_cols=331 Identities=18% Similarity=0.247 Sum_probs=239.9
Q ss_pred ceEEEEEEeCCCceEEEecc-CCCc-cccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHH
Q 043137 20 PTVEVDVTTSDGHVARAAVP-SGAS-TGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQ 97 (445)
Q Consensus 20 ~~v~V~v~td~G~~G~g~~~-~~~~-~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~ 97 (445)
.+++|+|+||+|++|||+++ .+.+ +|..|. .++..++...|++.++|.|+|+||.+++.+|+.|. .
T Consensus 51 ~~v~V~v~td~G~~G~GE~~~~~~~g~g~~e~-----------~~~~~~~~~~i~~~l~p~L~G~d~~~~~~i~~~l~-~ 118 (413)
T 1kcz_A 51 ESISVLLVLEDGQVAHGDCAAVQYSGAGGRDP-----------LFLAKDFIPVIEKEIAPKLIGREITNFKPMAEEFD-K 118 (413)
T ss_dssp CEEEEEEEETTSCEEEEEECCCTTTTSTTSCS-----------CCCHHHHHHHHHHHTHHHHTTCBCCCHHHHHHHHH-H
T ss_pred cEEEEEEEECCCCEEEEEEccccccccCcccc-----------cccHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHH-h
Confidence 46899999999999999654 3211 221111 01345667778888999999999999999999996 4
Q ss_pred hccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCC-----CcceeeeeeEEeecCcccCCCCcccc
Q 043137 98 LDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGN-----KNLVLPVPAFNVINGGSHAGNKLAMQ 172 (445)
Q Consensus 98 l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~-----~~~~vp~~~~~~~~gg~~~~~~~~~~ 172 (445)
.... ...++.+|++|||+||||+.||.+|+|||+||| |. .+. |+|+|+.. |+.. ..
T Consensus 119 ~~~~-------g~~~~~~a~~aid~AlwDl~ak~~g~Pl~~lLG---g~~~~~~~~~--~vp~~~~~-g~~~----~~-- 179 (413)
T 1kcz_A 119 MTVN-------GNRLHTAIRYGITQAILDAVAKTRKVTMAEVIR---DEYNPGAEIN--AVPVFAQS-GDDR----YD-- 179 (413)
T ss_dssp CEET-------TEECCHHHHHHHHHHHHHHHHHHHTSCHHHHHH---HHHSTTCCCC--CCCEECCC-TTCT----TH--
T ss_pred cccC-------CcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhc---ccccCcCccC--CeeeeEec-Cccc----cC--
Confidence 3210 123557899999999999999999999999999 63 334 44555432 1100 00
Q ss_pred eeeeccCChhcHHHHHHHHHHH-HHHHHHHHHhhcCCCCcccCCCCCCCCCccChHH----HHHHHHHHHHH-hCCCCCe
Q 043137 173 EFMILPVGASCFKEAMKMGVEV-YHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKE----GLELLNTAIAK-AGYTGKV 246 (445)
Q Consensus 173 e~~~~p~~~~~~~~a~~~~~~~-~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~----~l~~l~~av~~-~g~~~~i 246 (445)
.++..++++.+...++ |+++| .|+| ..+ ....+ .++.+ +++|+ +| +++
T Consensus 180 ------~~~~~~~~a~~~~~~G~~~~~K----iKvG-------~~~------~~~~~~~~~d~~~v-~avR~~~G--~~~ 233 (413)
T 1kcz_A 180 ------NVDKMIIKEADVLPHALINNVE----EKLG-------LKG------EKLLEYVKWLRDRI-IKLRVRED--YAP 233 (413)
T ss_dssp ------HHHHHHHTTCSEEEECCCCCCC----CCCC-------TTS------HHHHHHHHHHHHHH-HHHCSSTT--CCC
T ss_pred ------CHHHHHHHHHHHHHhcchhhee----eccC-------CCc------cchhhHHHHHHHHH-HHHHHhcC--CCc
Confidence 0111222222222223 43332 2322 110 00122 33444 34543 45 479
Q ss_pred EEEEecccc--ccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccC--Cee-eEECCCC----cCCHHHHHHHHH
Q 043137 247 VIGMDVAAS--EFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDY--PIV-SIEDPFD----QDDWEHYAKLTS 317 (445)
Q Consensus 247 ~l~vD~~a~--~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~--~i~-~iEdP~~----~~D~~~~~~L~~ 317 (445)
.|++|+|+. ++| .||.+++++++. .++++ ++. |||||++ ++|+++|++|++
T Consensus 234 ~l~vDaN~~~~~~~-------------------~~~~~~a~~~~~-~L~~~~~~i~~~iEqP~~~~~~~~d~~~~~~l~~ 293 (413)
T 1kcz_A 234 IFHIDVYGTIGAAF-------------------DVDIKAMADYIQ-TLAEAAKPFHLRIEGPMDVEDRQKQMEAMRDLRA 293 (413)
T ss_dssp EEEEECTTHHHHHT-------------------TTCHHHHHHHHH-HHHHHHTTSCEEEECSBCCSSHHHHHHHHHHHHH
T ss_pred eEEEecCCCccccc-------------------CCCHHHHHHHHH-HHHhhcCCcceEEecCCCCCCCcccHHHHHHHHH
Confidence 999999532 111 178899999865 46777 666 9999995 569999999999
Q ss_pred H-----hCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHH
Q 043137 318 E-----VGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIA 392 (445)
Q Consensus 318 ~-----~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~ 392 (445)
+ ++ +||++||+ ++++++++++++.+++|++|||++++||||++++++++|+++|++++++|++.||.+++++
T Consensus 294 ~l~~~g~~--ipIa~dE~-~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~i~~~A~~~gi~~~~~~~~~es~i~~~a 370 (413)
T 1kcz_A 294 ELDGRGVD--AELVADEW-CNTVEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEV 370 (413)
T ss_dssp HHHHHTCC--EEEEECTT-CCSHHHHHHHHHTTCSSEEEECTGGGSSTHHHHHHHHHHHHTTCEEEECCCTTSCHHHHHH
T ss_pred hhhcCCCC--CcEEeCCC-cCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCCCCCCHHHHHH
Confidence 9 67 99999998 5789999999999999999999999999999999999999999999988877899877555
Q ss_pred --HHHhhhcCCcccc--CCCCCchhHHHHHHHHHHHHHhCcc
Q 043137 393 --DLSVGLATGQIKT--GAPCRSERLAKYNQLLRIEEELGAE 430 (445)
Q Consensus 393 --~la~a~~~~~~~~--G~~~~~e~~~k~n~ll~i~~~l~~~ 430 (445)
||++++++.+++- |.+.+++|++|||||+||+++|..+
T Consensus 371 ~~hlaaa~~~~~i~~~pG~~~~~g~~~~~n~~~r~~~~~~~~ 412 (413)
T 1kcz_A 371 TTNIGMACGARQVLAKPGMGVDEGMMIVKNEMNRVLALVGRR 412 (413)
T ss_dssp HHHHHHHHTCSEEECCSSSSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCceeecCCCCCCcchhhhHHHHHHHHHHHhcc
Confidence 8888888888877 9988889999999999999998653
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-51 Score=415.28 Aligned_cols=328 Identities=18% Similarity=0.226 Sum_probs=239.6
Q ss_pred ceEEEEEEeCCCceEEEeccC----CCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHH
Q 043137 20 PTVEVDVTTSDGHVARAAVPS----GASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMV 95 (445)
Q Consensus 20 ~~v~V~v~td~G~~G~g~~~~----~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~ 95 (445)
++++|+|+||+|++|||+++. |++. + ++.|+++ .....+++.++|.|+|+||.+++.+|+.|.
T Consensus 51 ~~v~V~v~td~G~~G~GE~~~~~~sGa~~--------r--~~~~~~~---~~~~~i~~~l~p~LiG~d~~~~~~i~~~l~ 117 (413)
T 1kko_A 51 ECVSVQLILENGAVAVGDCAAVQYSGAGG--------R--DPLFLAE---HFIPFLNDHIKPLLEGRDVDAFLPNARFFD 117 (413)
T ss_dssp EEEEEEEEETTSCEEEEEECCCTTTTSTT--------C--CCCCCHH---HHHHHHHHHTHHHHTTCBCSCSHHHHHHHH
T ss_pred ceEEEEEEECCCCEEEEEecccccccccc--------c--CccccHH---HHHHHHHHHHHHHHcCCChHhHHHHHHHHH
Confidence 568999999999999997652 3221 0 1235543 344557778999999999999999999998
Q ss_pred HHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcc---eeeeeeEEeecCcccCCCCcccc
Q 043137 96 QQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNL---VLPVPAFNVINGGSHAGNKLAMQ 172 (445)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~---~vp~~~~~~~~gg~~~~~~~~~~ 172 (445)
..... .+....+|++|||+||||+.||.+|+|||+||| |..+. +-++|+|++ +|.+..
T Consensus 118 -~~~~~-------~~~~~~~A~~aid~AlwDl~ak~~g~Pl~~lLG---g~~~~~l~~~~vp~y~~--~g~~~~------ 178 (413)
T 1kko_A 118 -KLRID-------GNLLHTAVRYGLSQALLDATALASGRLKTEVVC---DEWQLPCVPEAIPLFGQ--SGDDRY------ 178 (413)
T ss_dssp -HCEET-------TEECCHHHHHHHHHHHHHHHHHHHTCCHHHHHH---HHTTCCCCCCCCCEECC--CTTCTT------
T ss_pred -hhhcc-------cCccHHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CccccccccCCeEEEEe--cCcccc------
Confidence 43210 111347899999999999999999999999999 74211 125555654 332210
Q ss_pred eeeeccCChhcHHHHHHHH----HHH-HHHHHHHHHhhcCCCCcccCCCCCCCCCccChHH----HHHHHHHHHHH-hCC
Q 043137 173 EFMILPVGASCFKEAMKMG----VEV-YHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKE----GLELLNTAIAK-AGY 242 (445)
Q Consensus 173 e~~~~p~~~~~~~~a~~~~----~~~-~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~----~l~~l~~av~~-~g~ 242 (445)
.+.++.++.. .++ |+.+ |.|+| . +.+.+.+ .++.+ +++|+ +|
T Consensus 179 ---------~~~~~~~~~~~~~~~~G~~~~i----K~KvG-------~------~~~~~~~~l~~d~~~v-~aiR~~~G- 230 (413)
T 1kko_A 179 ---------IAVDKMILKGVDVLPHALINNV----EEKLG-------F------KGEKLREYVRWLSDRI-LSLRSSPR- 230 (413)
T ss_dssp ---------HHHHHHHHTTCSEEEETTCCCC----CCCCC-------T------TSHHHHHHHHHHHHHH-HHHCSSTT-
T ss_pred ---------CCHHHHHHHHHHHHhCCCccEE----EEecC-------C------ChhhHHHHHHHHHHHH-HHHHHhhC-
Confidence 0112221111 012 3222 22322 1 1111222 11333 44543 45
Q ss_pred CCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccC--Cee-eEECCCC----cCCHHHHHHH
Q 043137 243 TGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDY--PIV-SIEDPFD----QDDWEHYAKL 315 (445)
Q Consensus 243 ~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~--~i~-~iEdP~~----~~D~~~~~~L 315 (445)
+++.|++|+|. +|.+. ..||.+++++++.+ ++++ ++. |||||++ ++|+++|++|
T Consensus 231 -~~~~L~vDan~--------~~~~~---------~~~~~~~A~~~~~~-L~~~~~~~~l~iEqP~~~~~~~~d~~~~~~l 291 (413)
T 1kko_A 231 -YHPTLHIDVYG--------TIGLI---------FDMDPVRCAEYIAS-LEKEAQGLPLYIEGPVDAGNKPDQIRMLTAI 291 (413)
T ss_dssp -CCCEEEEECTT--------HHHHH---------TTTCHHHHHHHHHH-TGGGGTTSCEEEECCCCCSSHHHHHHHHHHH
T ss_pred -CCCeEEEECCC--------ccccc---------cCCCHHHHHHHHHH-HHhccCCcceEEECCcCCCCCcccHHHHHHH
Confidence 47999999952 12221 16899999998655 5663 322 9999999 7899999999
Q ss_pred HHH-----hCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh--
Q 043137 316 TSE-----VGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED-- 388 (445)
Q Consensus 316 ~~~-----~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~-- 388 (445)
+++ ++ +||++||+ ++++++++++++.+++|++|||++++||||++++++++|+++|++++++|+++||.+
T Consensus 292 ~~~l~~~g~~--ipIa~dE~-~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~i~~~A~~~gi~~~~~~~~~et~i~~ 368 (413)
T 1kko_A 292 TKELTRLGSG--VKIVADEW-CNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISA 368 (413)
T ss_dssp HHHHHHHTCC--CEEEECTT-CCSHHHHHHHHHTTCCSEEEECGGGGSSTHHHHHHHHHHHHHTCEEEECCCTTSCHHHH
T ss_pred HHhcccCCCC--CcEEcCCC-CCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEecCCCCCCHHHH
Confidence 999 66 99999997 578999999999999999999999999999999999999999999999887679987
Q ss_pred hHHHHHHhhhcCCcc--ccCCCCCchhHHHHHHHHHHHHHhCc
Q 043137 389 TFIADLSVGLATGQI--KTGAPCRSERLAKYNQLLRIEEELGA 429 (445)
Q Consensus 389 ~~~~~la~a~~~~~~--~~G~~~~~e~~~k~n~ll~i~~~l~~ 429 (445)
++++|||+++++.++ ++|...+++|++|||||+|||+++..
T Consensus 369 aa~~hlaaa~~~~~ip~kpG~g~~~~~~~~~n~l~r~~~~~~~ 411 (413)
T 1kko_A 369 RTCVHVALAARPMRMLIKPGMGFDEGLNIVFNEMNRTIALLQT 411 (413)
T ss_dssp HHHHHHHHHHCCSEEECCSCSSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCcccCCCCCCCCccHHHHHHHHHHHHHHHhc
Confidence 678899999998888 89999999999999999999998753
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=403.59 Aligned_cols=309 Identities=16% Similarity=0.226 Sum_probs=229.7
Q ss_pred CceEEEEEEEEEEecCC----CCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHh
Q 043137 1 MAITITAVKARQIFDSR----GNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIG 76 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~~----g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~ 76 (445)
|.||||+|+++.+..+. .++.++|+|+||+|++|||++.. +++..++...+.+.++
T Consensus 1 m~MkI~~i~~~~~~~p~~~~~~~~~~~V~v~td~G~~G~GE~~~--------------------~~~~~~~~~~~~~~l~ 60 (393)
T 4dwd_A 1 MSLKIAKVEALSVAMGDGTGWMPTSAFVRITAEDGTVGWGEASP--------------------MLGGIASLGVVARDIA 60 (393)
T ss_dssp -CCBEEEEEEEEEECCC-----CEEEEEEEEETTSCEEEEEECC--------------------GGGGHHHHHHHHHHTH
T ss_pred CCCEEEEEEEEEEcCCCcccccceEEEEEEEECCCCEEEEEccC--------------------cHHHHHHHHHHHHHHH
Confidence 88999999999886441 14579999999999999997652 1123444334345599
Q ss_pred hhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeE
Q 043137 77 PALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAF 156 (445)
Q Consensus 77 p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~ 156 (445)
|.|+|+||.+++++|+.|++.+... |++++..+|+||||+||||+.||.+|+|||+||| |..++++|++
T Consensus 61 p~liG~d~~~~e~~~~~l~~~~~~~------g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLG---g~~r~~v~~y-- 129 (393)
T 4dwd_A 61 PFLEGQEVLDHAVLLDRMMHRLVKL------GPEGIATAALAACDIALWDLKGKLLGQPIYKLLG---GAWRTRLPCY-- 129 (393)
T ss_dssp HHHTTSBGGGHHHHHHHHHHHTGGG------CCTTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSCSEEEEE--
T ss_pred HHHCCCCcccHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCceeeE--
Confidence 9999999999999999998443221 2234556899999999999999999999999999 9877888874
Q ss_pred EeecCcccCCCCcccceeeeccCChhcHHHH-HHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHH
Q 043137 157 NVINGGSHAGNKLAMQEFMILPVGASCFKEA-MKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNT 235 (445)
Q Consensus 157 ~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a-~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~ 235 (445)
.+++|+.. .. ++...+++ .+...++|+++| .|+|..... ...+.+.+.++++++|+
T Consensus 130 ~s~~g~~~-----~~--------~e~~~~~a~~~~~~~G~~~~K----lKvG~~~~~------~~~~~~~d~~~v~avR~ 186 (393)
T 4dwd_A 130 SSIGGNAA-----RS--------VDEVVREVARRVEAEQPAAVK----IRWDGDRTR------CDVDIPGDIAKARAVRE 186 (393)
T ss_dssp EEECCCSS-----SC--------HHHHHHHHHHHHHHHCCSEEE----EECCCCTTC------CSCCHHHHHHHHHHHHH
T ss_pred EecCccCC-----CC--------HHHHHHHHHHHHHHcCCCEEE----EccCCCCcc------cccCHHHHHHHHHHHHH
Confidence 44422110 11 12223444 444445666554 455421000 01123344555555555
Q ss_pred HHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHH
Q 043137 236 AIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKL 315 (445)
Q Consensus 236 av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L 315 (445)
++ | +++.|++|+ |++||.++++++ .+.++++++.|||||++++|++++++|
T Consensus 187 a~---g--~~~~l~vDa-----------------------N~~~~~~~A~~~-~~~L~~~~i~~iEqP~~~~d~~~~~~l 237 (393)
T 4dwd_A 187 LL---G--PDAVIGFDA-----------------------NNGYSVGGAIRV-GRALEDLGYSWFEEPVQHYHVGAMGEV 237 (393)
T ss_dssp HH---C--TTCCEEEEC-----------------------TTCCCHHHHHHH-HHHHHHTTCSEEECCSCTTCHHHHHHH
T ss_pred Hh---C--CCCeEEEEC-----------------------CCCCCHHHHHHH-HHHHHhhCCCEEECCCCcccHHHHHHH
Confidence 54 5 589999999 367899999987 566899999999999999999999999
Q ss_pred HHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHH--H
Q 043137 316 TSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIA--D 393 (445)
Q Consensus 316 ~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~--~ 393 (445)
+++++ +||++||+. .++++++++++.+ +|++|+|++++||||++++++++|+++|+++++++ + ++.++.++ |
T Consensus 238 ~~~~~--iPIa~dE~~-~~~~~~~~~i~~~-~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~-~-~~~i~~aa~~h 311 (393)
T 4dwd_A 238 AQRLD--ITVSAGEQT-YTLQALKDLILSG-VRMVQPDIVKMGGITGMMQCAALAHAHGVEFVPHQ-T-QPGVGHFANIH 311 (393)
T ss_dssp HHHCS--SEEEBCTTC-CSHHHHHHHHHHT-CCEECCCTTTTTHHHHHHHHHHHHHHHTCEECCCC-C-CSSHHHHHHHH
T ss_pred HhhCC--CCEEecCCc-CCHHHHHHHHHcC-CCEEEeCccccCCHHHHHHHHHHHHHcCCEEeecC-C-CcHHHHHHHHH
Confidence 99998 999999985 6799999999999 99999999999999999999999999999986544 4 67666544 5
Q ss_pred HHhhh
Q 043137 394 LSVGL 398 (445)
Q Consensus 394 la~a~ 398 (445)
|++++
T Consensus 312 laaa~ 316 (393)
T 4dwd_A 312 VLSTL 316 (393)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 55443
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-49 Score=401.44 Aligned_cols=304 Identities=18% Similarity=0.194 Sum_probs=233.2
Q ss_pred eEEEEEEEEEEecC--------CC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFDS--------RG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~~--------~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+..+ .+ +..++|+|+||+|++|||++...+ .++|++++...+...
T Consensus 5 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~i~td~G~~G~GE~~~~~-------------~~~y~~e~~~~~~~~ 71 (381)
T 3fcp_A 5 ATVEQIESWIVDVPTIRPHKLSMTTMGCQSLVIVRLTRSDGICGIGEATTIG-------------GLSYGVESPEAISSA 71 (381)
T ss_dssp CBEEEEEEEEEEECBC-----------CEEEEEEEEEETTSCEEEEEEECST-------------TTTSSSCCHHHHHHH
T ss_pred cEEEEEEEEEEeccccCCeEecccEEEeeeEEEEEEEECCCCEEEeccccCC-------------CCccCCCCHHHHHHH
Confidence 89999999988533 22 346899999999999999653211 123666778888888
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
|++.++|.|+|+||.+++.+|+.|++.+. + ..+|++|||+||||+.||.+|+|||+||| |..+++
T Consensus 72 i~~~l~p~l~G~d~~~~~~~~~~l~~~~~----------g--~~~A~said~ALwDl~gk~~g~Pv~~LLG---g~~r~~ 136 (381)
T 3fcp_A 72 ITHYLTPLLKGQPADNLNALTARMNGAIK----------G--NTFAKSAIETALLDAQGKALGLPVSALLG---GALQTA 136 (381)
T ss_dssp HHHTHHHHHTTSBSSCHHHHHHHHHHHCC----------S--CHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCSCSE
T ss_pred HHHHHHHHhcCCCcCCHHHHHHHHHHHhc----------C--cHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCCCCc
Confidence 88889999999999999999999984332 1 15799999999999999999999999999 987888
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGV-EVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEG 229 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~-~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~ 229 (445)
+|++.. ++.+ + +++.++++.+... .+|+++| .|+|. .+.+.+.++
T Consensus 137 v~~~~t--~~~~-------~---------~~~~~~~~~~~~~~~G~~~~K----iKvg~------------~~~~~d~~~ 182 (381)
T 3fcp_A 137 LPVLWT--LASG-------D---------TAKDIAEGEKLLAEGRHRAFK----LKIGA------------RELATDLRH 182 (381)
T ss_dssp EEBCEE--ECSS-------C---------HHHHHHHHHHHTC----CEEE----EECCS------------SCHHHHHHH
T ss_pred eeeEEE--ecCC-------C---------hHHHHHHHHHHHHhCCCCEEE----EecCC------------CChHHHHHH
Confidence 888532 2211 1 1122344444333 2465543 45441 112334555
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCH
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDW 309 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~ 309 (445)
++++|+++ | +++.|++|+ |+.||.++++++ .+.++++++.|||||++++|+
T Consensus 183 v~avR~a~---g--~~~~l~vDa-----------------------N~~~~~~~A~~~-~~~l~~~~i~~iEeP~~~~d~ 233 (381)
T 3fcp_A 183 TRAIVEAL---G--DRASIRVDV-----------------------NQAWDAATGAKG-CRELAAMGVDLIEQPVSAHDN 233 (381)
T ss_dssp HHHHHHHT---C--TTCEEEEEC-----------------------TTCBCHHHHHHH-HHHHHHTTCSEEECCBCTTCH
T ss_pred HHHHHHHc---C--CCCeEEEEC-----------------------CCCCCHHHHHHH-HHHHhhcCccceeCCCCcccH
Confidence 55555544 5 579999999 367899999987 556899999999999999999
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+++++|+++++ +||++||+. .++++++++++.+++|++|||++++||||++++++++|+++|++++++| +.|+.++
T Consensus 234 ~~~~~l~~~~~--ipIa~dE~~-~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~-~~es~i~ 309 (381)
T 3fcp_A 234 AALVRLSQQIE--TAILADEAV-ATAYDGYQLAQQGFTGAYALKIAKAGGPNSVLALARVAQAAGIGLYGGT-MLEGTVG 309 (381)
T ss_dssp HHHHHHHHHSS--SEEEESTTC-CSHHHHHHHHHTTCCSEEEECHHHHTSTTHHHHHHHHHHHHTCEEEECC-SCCCHHH
T ss_pred HHHHHHHHhCC--CCEEECCCc-CCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCceecCC-CCccHHH
Confidence 99999999998 999999985 6699999999999999999999999999999999999999999998776 5788776
Q ss_pred HHHHHHhhhcCC
Q 043137 390 FIADLSVGLATG 401 (445)
Q Consensus 390 ~~~~la~a~~~~ 401 (445)
.++.++++...+
T Consensus 310 ~aa~~hlaaa~~ 321 (381)
T 3fcp_A 310 TVASLHAWSTLP 321 (381)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHHhCC
Confidence 655555544333
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-49 Score=400.97 Aligned_cols=306 Identities=17% Similarity=0.205 Sum_probs=235.1
Q ss_pred eEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|+|++|+++.+.. +.+ +..++|+|+||+|++|||++...+ .++|++++...+...
T Consensus 6 ~~I~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~-------------~~~y~~e~~~~~~~~ 72 (382)
T 3dgb_A 6 SAIESIETIIVDLPTIRPHKLAMHTMQNQTLVLIRLRCADGIEGLGESTTIG-------------GLAYGNESPDSIKTN 72 (382)
T ss_dssp TBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECST-------------TTTSSSCCHHHHHHH
T ss_pred CeeeEEEEEEEeeccCCCeEecCeEEeeeeEEEEEEEECCCCEEEEecccCC-------------CCccCCCCHHHHHHH
Confidence 3499999987742 333 356899999999999999653211 123666778888888
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
|++.++|.|+|+||.+++++|+.|++.+. + ..+|++|||+||||+.||.+|+|||+||| |..+++
T Consensus 73 i~~~l~p~liG~d~~~~~~~~~~l~~~~~----------g--~~~A~said~ALwDl~gk~~g~Pv~~LLG---g~~r~~ 137 (382)
T 3dgb_A 73 IDRFVAPLLIGQDASNINAAMLRLEQSIR----------G--NTFAKSGIESALLDAQGKRLGLPVSELLG---GRVRDA 137 (382)
T ss_dssp HHHTHHHHHTTSBTTCHHHHHHHHHHHCC----------S--CHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCSCSE
T ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHHhc----------C--chHHHHHHHHHHHHHHHHHcCCCHHHHhC---CCCCCe
Confidence 88889999999999999999999984332 1 15799999999999999999999999999 987888
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGV-EVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEG 229 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~-~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~ 229 (445)
+|++.. ++.+ + +++.++++.+... .+|+++| .|+|. .+.+.+.++
T Consensus 138 v~~~~t--~~~~-------~---------~~~~~~~~~~~~~~~G~~~~K----iKvg~------------~~~~~d~~~ 183 (382)
T 3dgb_A 138 LPVAWT--LASG-------D---------TAKDIAEAQKMLDLRRHRIFK----LKIGA------------GEVDRDLAH 183 (382)
T ss_dssp EEBCEE--ECSS-------C---------HHHHHHHHHHHHHTTSCSEEE----EECCS------------SCHHHHHHH
T ss_pred eeEEEE--ecCC-------C---------hHHHHHHHHHHHHhCCCCEEE----EeeCC------------CCHHHHHHH
Confidence 888532 2211 0 1122344443333 2454433 34331 122344566
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCH
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDW 309 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~ 309 (445)
++++|+++ | +++.|++|+ |+.|+.++++++ .+.++++++.|||||++++|+
T Consensus 184 v~avR~a~---g--~~~~l~vDa-----------------------N~~~~~~~A~~~-~~~l~~~~i~~iEqP~~~~d~ 234 (382)
T 3dgb_A 184 VIAIKKAL---G--DSASVRVDV-----------------------NQAWDEAVALRA-CRILGGNGIDLIEQPISRNNR 234 (382)
T ss_dssp HHHHHHHH---G--GGSEEEEEC-----------------------TTCBCHHHHHHH-HHHHHTTTCCCEECCBCTTCH
T ss_pred HHHHHHHc---C--CCCeEEEeC-----------------------CCCCCHHHHHHH-HHHHhhcCcCeeeCCCCccCH
Confidence 66666655 5 479999999 367899999987 566899999999999999999
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+++++|+++++ +||++||+. .++++++++++.+++|++|||++++||||++++++++|+++|++++++| +.|+.++
T Consensus 235 ~~~~~l~~~~~--ipIa~dE~~-~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~-~~es~ig 310 (382)
T 3dgb_A 235 AGMVRLNASSP--APIMADESI-ECVEDAFNLAREGAASVFALKIAKNGGPRATLRTAAIAEAAGIGLYGGT-MLEGGIG 310 (382)
T ss_dssp HHHHHHHHHCS--SCEEESTTC-SSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECC-SCCCHHH
T ss_pred HHHHHHHHhCC--CCEEeCCCc-CCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEeecC-CCccHHH
Confidence 99999999998 999999985 6699999999999999999999999999999999999999999998776 5788777
Q ss_pred HHHHHHhhhcCCcc
Q 043137 390 FIADLSVGLATGQI 403 (445)
Q Consensus 390 ~~~~la~a~~~~~~ 403 (445)
.++.++++...+.+
T Consensus 311 ~aa~~hlaaa~~~~ 324 (382)
T 3dgb_A 311 TLASAHAFLTLNKL 324 (382)
T ss_dssp HHHHHHHHTTSSCC
T ss_pred HHHHHHHHHcCCCC
Confidence 65555554444433
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=405.68 Aligned_cols=314 Identities=17% Similarity=0.201 Sum_probs=231.1
Q ss_pred CceEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhc
Q 043137 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALA 80 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~Li 80 (445)
|+||||+|++..+.. .....++|+|+||+|++|||++... ++ ..++...|++.++|.|+
T Consensus 4 ~~mkIt~v~~~~~~~-~~~~~~~V~v~td~G~~G~GE~~~~-----------------~~---~~~~~~~i~~~l~p~li 62 (401)
T 3sbf_A 4 KETIISDIHCIITKP-DRHNLITVVVETNEGVTGFGCATFQ-----------------QR---PLAVKTMVDEYLKPILI 62 (401)
T ss_dssp -CCBEEEEEEEEECS-SSSCEEEEEEEETTSCEEEEECCCT-----------------TS---HHHHHHHHHHTHHHHHT
T ss_pred CCeEEEEEEEEEEcC-CCceEEEEEEEeCCCCEEEEccccC-----------------CC---HHHHHHHHHHHHHHHHc
Confidence 679999999987632 2236799999999999999976431 11 23445567778999999
Q ss_pred CCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeec
Q 043137 81 GKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVIN 160 (445)
Q Consensus 81 G~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~ 160 (445)
|+||.+++++|+.|++.. + |+.+.+..+|+|||||||||+.||.+|+|||+||| |+.++++|++. .++
T Consensus 63 G~d~~~~e~~~~~~~~~~-----~--~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~y~--~~~ 130 (401)
T 3sbf_A 63 GKNANNIEDLWQMMMVNA-----Y--WRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFG---GKSRDAIPVYT--HAT 130 (401)
T ss_dssp TSBTTCHHHHHHHHHHTT-----S--SCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHT---CCSSSSEEEEE--EEE
T ss_pred CCChhhHHHHHHHHHHhc-----c--cCCCcHHHHHHHHHHHHHHHHhHhHhCCcHHHHhC---CCcCCeeeEEE--eCC
Confidence 999999999999998321 1 22344456899999999999999999999999999 98888888754 222
Q ss_pred CcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccC--------CCCCCCC---CccChHHH
Q 043137 161 GGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVG--------DEGGFAP---NIQENKEG 229 (445)
Q Consensus 161 gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~--------~~g~~~~---~~~~~~~~ 229 (445)
+. + ++...+++.+...++|+++| .|+|....... ..|.+.. .++.+.++
T Consensus 131 ~~-------~---------~e~~~~~a~~~~~~G~~~~K----~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~ 190 (401)
T 3sbf_A 131 SD-------T---------MEGIYDLVEGFLEKGYKHIR----CQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTM 190 (401)
T ss_dssp ES-------S---------HHHHHHHHHHHHHTTCCEEE----EEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHH
T ss_pred CC-------C---------HHHHHHHHHHHHHcCCCEEE----EeeccCCcccccccccccccccccccchHHHHHHHHH
Confidence 11 1 12234455554455676654 56553211000 0010000 01223444
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCH
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDW 309 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~ 309 (445)
++++|+++ | +++.|++|+ |++||.++++++ .+.++++++.|||||++++|+
T Consensus 191 v~avR~a~---G--~d~~l~vDa-----------------------n~~~~~~~A~~~-~~~L~~~~i~~iEqP~~~~~~ 241 (401)
T 3sbf_A 191 FKSLREKY---G--NQFHILHDV-----------------------HERLFPNQAIQF-AKEVEQYKPYFIEDILPPNQT 241 (401)
T ss_dssp HHHHHHHH---T--TSSEEEEEC-----------------------TTCSCHHHHHHH-HHHHGGGCCSCEECSSCTTCG
T ss_pred HHHHHHHc---C--CCCEEEEEC-----------------------CCCCCHHHHHHH-HHHHHhcCCCEEECCCChhHH
Confidence 55555544 5 589999999 367899999987 566899999999999999999
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+++++|+++++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++++++..++.++
T Consensus 242 ~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~kia~~A~~~gi~~~~h~~~~~s~i~ 318 (401)
T 3sbf_A 242 EWLDNIRSQSS--VSLGLGELF-NNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCAPDMTPIG 318 (401)
T ss_dssp GGHHHHHTTCC--CCEEECTTC-CSHHHHHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHHHHHTCEECCCCCTTSCHHH
T ss_pred HHHHHHHhhCC--CCEEeCCcc-CCHHHHHHHHhcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEecCCcccchHH
Confidence 99999999998 999999985 679999999999999999999999999999999999999999998654433367665
Q ss_pred H--HHHHHhhhc
Q 043137 390 F--IADLSVGLA 399 (445)
Q Consensus 390 ~--~~~la~a~~ 399 (445)
. .+||+.++.
T Consensus 319 ~aA~~hlaaa~p 330 (401)
T 3sbf_A 319 AAVNTHLNVHLH 330 (401)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHHHhCC
Confidence 4 456655543
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-49 Score=398.72 Aligned_cols=305 Identities=18% Similarity=0.214 Sum_probs=234.8
Q ss_pred eEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+.. +.+ +..++|+|+||+|++|||++.... ++.|++++...+...
T Consensus 6 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~-------------~~~~~~e~~~~~~~~ 72 (383)
T 3i4k_A 6 LTIQKVESRILDVPLIRPHGFATTTSTEQHILLVSVHLENGVIGYGEGVVPG-------------GPWWGGESVETMKAL 72 (383)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECCSS-------------STTTTSCCHHHHHHH
T ss_pred CEEEEEEEEEEeccccCCeEecceEEEeeeEEEEEEEECCCCEEEEecccCC-------------CCccCCCCHHHHHHH
Confidence 8999999987742 232 356899999999999999653211 123667778888888
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
|++.++|.|+|+||.+++.+|+.|++.+.+ ..+|++|||+||||+.||.+|+|||+||| |..+++
T Consensus 73 i~~~l~p~l~G~d~~~~~~~~~~l~~~~~~------------~~~A~said~ALwDl~gk~~g~Pv~~LLG---g~~r~~ 137 (383)
T 3i4k_A 73 VDGYLAPVLIGRAVSELAGIMADLERVVAR------------ARYAKAAVDVAMHDAWARSLNVPVRDLLG---GTVRDK 137 (383)
T ss_dssp HHHTTHHHHTTSBGGGHHHHHHHHHHHCCS------------CHHHHHHHHHHHHHHHHHHTTSBGGGGTT---CCSCSE
T ss_pred HHhhhhHHHcCCCccCHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHHHHHHcCCCHHHHhC---CCCCCe
Confidence 888899999999999999999999843321 25799999999999999999999999999 987888
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHH-HHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVE-VYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEG 229 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~-~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~ 229 (445)
+|++. +++.+ + +++.++++.+...+ +|+++| .|+|. .+.+.+.++
T Consensus 138 v~~~~--t~~~~-------~---------~~~~~~~a~~~~~~~G~~~~K----~Kvg~------------~~~~~d~~~ 183 (383)
T 3i4k_A 138 VDVTW--ALGVL-------P---------LDVAVAEIEERIEEFGNRSFK----LKMGA------------GDPAEDTRR 183 (383)
T ss_dssp EEBCE--EECSC-------C---------HHHHHHHHHHHHHHHCCSEEE----EECCS------------SCHHHHHHH
T ss_pred EEEeE--EeeCC-------C---------HHHHHHHHHHHHHhcCCcEEE----EeeCC------------CCHHHHHHH
Confidence 88753 22211 1 12234455544444 565543 45441 122333444
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCH
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDW 309 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~ 309 (445)
++++|++ +| +++.|++|+ |++||.++++++ .+.++++++.|||||++++|+
T Consensus 184 v~avR~a---~g--~~~~l~vDa-----------------------n~~~~~~~A~~~-~~~l~~~~i~~iEqP~~~~d~ 234 (383)
T 3i4k_A 184 VAELARE---VG--DRVSLRIDI-----------------------NARWDRRTALHY-LPILAEAGVELFEQPTPADDL 234 (383)
T ss_dssp HHHHHHT---TT--TTSEEEEEC-----------------------TTCSCHHHHHHH-HHHHHHTTCCEEESCSCTTCH
T ss_pred HHHHHHH---cC--CCCEEEEEC-----------------------CCCCCHHHHHHH-HHHHHhcCCCEEECCCChhhH
Confidence 4444443 35 589999999 367899999987 567899999999999999999
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+++++|+++++ +||++||+. .++++++++++.+++|++|||++++||||++++++++|+++|++++++| +.|+..+
T Consensus 235 ~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~-~~es~i~ 310 (383)
T 3i4k_A 235 ETLREITRRTN--VSVMADESV-WTPAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEAGGLACHGAT-SLEGPIG 310 (383)
T ss_dssp HHHHHHHHHHC--CEEEESTTC-SSHHHHHHHHHHTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCEEEECC-SCCCHHH
T ss_pred HHHHHHHhhCC--CCEEecCcc-CCHHHHHHHHHcCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEeCC-CCccHHH
Confidence 99999999998 999999985 6799999999999999999999999999999999999999999998877 4688766
Q ss_pred HHHHHHhhhcCCc
Q 043137 390 FIADLSVGLATGQ 402 (445)
Q Consensus 390 ~~~~la~a~~~~~ 402 (445)
.++.++++...+.
T Consensus 311 ~aa~~hlaaa~p~ 323 (383)
T 3i4k_A 311 TAASLQFAASTKA 323 (383)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCC
Confidence 5554444333333
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-49 Score=404.62 Aligned_cols=319 Identities=18% Similarity=0.209 Sum_probs=236.1
Q ss_pred CceEEEEEEEEEEecCCCCc--eEEEEEEeCCCceEEEec-cCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhh
Q 043137 1 MAITITAVKARQIFDSRGNP--TVEVDVTTSDGHVARAAV-PSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGP 77 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~~g~~--~v~V~v~td~G~~G~g~~-~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p 77 (445)
|.|||++|+++.+.++.+++ +++|+|+||+|++|||++ +.. | .+...+...+++ |+|
T Consensus 1 m~MkI~~i~~~~~~~~~~~~~~~v~V~v~td~G~~G~Ge~~~~~---g----------------~~~~~~~~~i~~-l~p 60 (403)
T 2ox4_A 1 MSLKITKIEIFHVHTRPQSGQRPILVKVSTDEGIYGLGEAGIAY---G----------------VGGSAAAGILKD-YAA 60 (403)
T ss_dssp -CCCEEEEEEEEECCCTTTCCCCEEEEEEETTSCEEEEEESCSS---S----------------SCHHHHHHHHHH-HHH
T ss_pred CCCeEEEEEEEEecCCCCCCccceEEEEEeCCCCEEEEeecCCC---C----------------CchHHHHHHHHH-HHH
Confidence 78999999999998765555 679999999999999977 541 1 113455566776 999
Q ss_pred hhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEE
Q 043137 78 ALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFN 157 (445)
Q Consensus 78 ~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~ 157 (445)
.|+|+||.+++.+|+.|. ... +|..+.++++.+|++|||+||||+.||.+|+|||+||| |..++++|+ |+
T Consensus 61 ~l~G~d~~~~~~i~~~l~-~~~----~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llG---g~~~~~vp~--y~ 130 (403)
T 2ox4_A 61 LLIGEDPFNTEAIWEKLF-KKT----FWGQGGGTVIFSGISAFDIAFWDIKGKALNLPVYKLLG---GKNREDLRV--YA 130 (403)
T ss_dssp HHTTCCTTCHHHHHHHHH-HSS----SGGGTCBHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSSSSEEE--EE
T ss_pred HcCCCCHHHHHHHHHHHH-Hhc----ccccCCcHHHHhHHHHHHHHHHHHhHhHcCCcHHHHcC---CCCCCceee--eE
Confidence 999999999999999998 322 11112345567899999999999999999999999999 976666665 55
Q ss_pred e-ec-C-cccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhc------CCCCcccCCCCCCCC--CccCh
Q 043137 158 V-IN-G-GSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKY------GQDATNVGDEGGFAP--NIQEN 226 (445)
Q Consensus 158 ~-~~-g-g~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~------G~~~~~~~~~g~~~~--~~~~~ 226 (445)
+ ++ | +.|+.+..++++ ..+++.+...++|+.+| .|. |... ..+.|++.+ +++.+
T Consensus 131 ~~i~~g~~~~~~~~~~~e~---------~~~~a~~~~~~Gf~~vK----ik~~~~~~~G~~~--~s~~~g~~~~~~~~~~ 195 (403)
T 2ox4_A 131 SQLQFGWGKERKSKGRKEE---------YAEEALKAVAEGYDAVK----VDVLAHDRNGSRE--GVFLEGPLPSETIKIG 195 (403)
T ss_dssp ECGGGCSSSSCCCCCSHHH---------HHHHHHHHHHTTCSEEE----ECCSSSCTTSCCT--TCCCSSSCCHHHHHHH
T ss_pred eeccCCccccccccCCHHH---------HHHHHHHHHHcCCCEEE----EeccccCCccccc--cCcccCCCchHHHHHH
Confidence 4 44 3 444433323322 24556555556676655 232 2110 011122221 12223
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCc
Q 043137 227 KEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQ 306 (445)
Q Consensus 227 ~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~ 306 (445)
.+.++++|+++ | +++.|++|+| ++||.+++++++ +.+++|++.|||||+++
T Consensus 196 ~e~v~avr~av---G--~d~~l~vDan-----------------------~~~~~~~ai~~~-~~l~~~~i~~iE~P~~~ 246 (403)
T 2ox4_A 196 VERVEAIRNAV---G--PDVDIIVENH-----------------------GHTDLVSAIQFA-KAIEEFNIFFYEEINTP 246 (403)
T ss_dssp HHHHHHHHHHH---C--TTSEEEEECT-----------------------TCSCHHHHHHHH-HHHGGGCEEEEECCSCT
T ss_pred HHHHHHHHHHh---C--CCCeEEEECC-----------------------CCCCHHHHHHHH-HHHHhhCCCEEeCCCCh
Confidence 44455444444 6 5899999993 578889999985 56899999999999999
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCC
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGET 386 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et 386 (445)
+|++++++|+++++ +||++||+. .++++++++++.+++|+++||++++||||++++++++|+++|+++++++ +. +
T Consensus 247 ~d~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~i~~~A~~~g~~~~~h~-~~-s 321 (403)
T 2ox4_A 247 LNPRLLKEAKKKID--IPLASGERI-YSRWGFLPFLEDRSIDVIQPDLGTCGGFTEFKKIADMAHIFEVTVQAHV-AG-T 321 (403)
T ss_dssp TSTHHHHHHHHTCC--SCEEECTTC-CHHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHHHHHHHTTCEECCCC-CS-C
T ss_pred hhHHHHHHHHHhCC--CCEEecCCc-CCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecC-CC-C
Confidence 99999999999998 999999986 4599999999999999999999999999999999999999999987744 44 7
Q ss_pred hhhHH--HHHHhhh
Q 043137 387 EDTFI--ADLSVGL 398 (445)
Q Consensus 387 ~~~~~--~~la~a~ 398 (445)
.++.+ +||+.++
T Consensus 322 ~i~~aa~~hlaaa~ 335 (403)
T 2ox4_A 322 GVAEAASLHAEIAI 335 (403)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC
Confidence 76654 5555544
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=406.39 Aligned_cols=313 Identities=18% Similarity=0.222 Sum_probs=231.2
Q ss_pred ceEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcC
Q 043137 2 AITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAG 81 (445)
Q Consensus 2 ~mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG 81 (445)
+||||+|++..+. ......++|+|+||+|++|||++... |. ..++...|++.++|.|+|
T Consensus 26 ~mkIt~v~~~~~~-~~~~~~v~V~v~td~Gi~G~GE~~~~-----------------~~---~~~~~~~i~~~l~p~LiG 84 (422)
T 3tji_A 26 PVIIKNIECFITR-PDRHNLVTVRVTTEQGITGHGCATFQ-----------------QR---PLAVKTLVDEYLQPLMIG 84 (422)
T ss_dssp CCBEEEEEEEEEC-SSSSCEEEEEEEETTSCCEEEECCCT-----------------TS---HHHHHHHHHHTHHHHHTT
T ss_pred CcEEEEEEEEEEc-CCCccEEEEEEEECCCCEEEEeccCC-----------------CC---HHHHHHHHHHHHHHHhCC
Confidence 7999999988763 22236799999999999999976431 11 234455677789999999
Q ss_pred CCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecC
Q 043137 82 KDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVING 161 (445)
Q Consensus 82 ~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~g 161 (445)
+||.+++++|+.|++ .. + |+.+.+..+|+|||||||||+.||.+|+|||+||| |+.++++|++. .+++
T Consensus 85 ~dp~~ie~~~~~l~~-~~----~--~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~y~--~~~~ 152 (422)
T 3tji_A 85 RDANNIEDLWQMMNV-NA----Y--WRNGPLMNNAISGVDMALWDIKGQLAGMPLYQLFG---GKSRDAIPAYS--HASG 152 (422)
T ss_dssp SBTTCHHHHHHHHHH-TT----S--SCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSSSCEEEEE--EEEE
T ss_pred CCcccHHHHHHHHHH-hh----h--ccCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHcC---CCCCCeEEEEE--EeCC
Confidence 999999999999983 21 1 22344456899999999999999999999999999 98888888754 2221
Q ss_pred cccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCccc----C----CCCCCCC---CccChHHHH
Q 043137 162 GSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNV----G----DEGGFAP---NIQENKEGL 230 (445)
Q Consensus 162 g~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~----~----~~g~~~~---~~~~~~~~l 230 (445)
. + +++..+++.+...++|+++| .|+|...... . ..|.+.. .++.+.+++
T Consensus 153 ~-------~---------~e~~~~~a~~~~~~G~~~iK----lKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~v 212 (422)
T 3tji_A 153 E-------T---------LEALFASVDALIAQGYRHIR----CQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMF 212 (422)
T ss_dssp S-------S---------HHHHHHHHHHHHHTTCSEEE----EEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHHHHHH
T ss_pred C-------C---------HHHHHHHHHHHHHcCCCEEE----EeeccCCcccccccccccccccccccchhHHHHHHHHH
Confidence 1 1 12234455555555676654 5655321000 0 0000000 012234445
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHH
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWE 310 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~ 310 (445)
+++|+++ | +++.|++|+ |++||.++++++ .+.++++++.|||||++++|++
T Consensus 213 ~avR~av---G--~d~~L~vDa-----------------------N~~~~~~~A~~~-~~~Le~~~i~~iEqP~~~~d~~ 263 (422)
T 3tji_A 213 HALREKY---G--WKLHILHDV-----------------------HERLFPQQAVQL-AKQLEPFQPYFIEDILPPQQSA 263 (422)
T ss_dssp HHHHHHH---C--SSSEEEEEC-----------------------TTCSCHHHHHHH-HHHHGGGCCSEEECCSCGGGGG
T ss_pred HHHHHHc---C--CCCEEEEEC-----------------------CCCCCHHHHHHH-HHHHHhhCCCeEECCCChhhHH
Confidence 5555444 6 589999999 367899999987 5678999999999999999999
Q ss_pred HHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH
Q 043137 311 HYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF 390 (445)
Q Consensus 311 ~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~ 390 (445)
++++|+++++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++++++..++.++.
T Consensus 264 ~~~~l~~~~~--iPIa~dE~~-~~~~~~~~ll~~ga~d~v~~k~~~~GGit~~~kia~lA~a~gv~v~~h~~~~~s~Ig~ 340 (422)
T 3tji_A 264 WLEQVRQQSC--VPLALGELF-NNPAEWHDLIVNRRIDFIRCHVSQIGGITPALKLAHLCQAFGVRLAWHGPGDMTPIGV 340 (422)
T ss_dssp GHHHHHHHCC--CCEEECTTC-CSGGGTHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHHHHTTCEECCCCCSSSCHHHH
T ss_pred HHHHHHhhCC--CCEEEeCCc-CCHHHHHHHHhcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEecCCCCccHHHH
Confidence 9999999998 999999985 6699999999999999999999999999999999999999999986555433676654
Q ss_pred --HHHHHhhhc
Q 043137 391 --IADLSVGLA 399 (445)
Q Consensus 391 --~~~la~a~~ 399 (445)
.+||+.++.
T Consensus 341 aA~~hlaaa~p 351 (422)
T 3tji_A 341 AVNTHLNIHLH 351 (422)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHhCC
Confidence 456655543
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=406.37 Aligned_cols=322 Identities=13% Similarity=0.128 Sum_probs=241.2
Q ss_pred CceEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhc
Q 043137 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALA 80 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~Li 80 (445)
|.|||++|+++.+. +. .++++|+|+||+| +|||+++.+ .+..++...+++ ++|.|+
T Consensus 4 ~~MkI~~i~~~~~~-~~-~~~v~V~v~td~G-~G~Ge~~~g--------------------~~~~~~~~~i~~-l~p~li 59 (410)
T 2qq6_A 4 SAPRITRVETAAIR-AV-GPSVLVRVWAGDE-HGLGECYPS--------------------APAAGIHHIVMN-MEEQLL 59 (410)
T ss_dssp CCCCCCEEEEEEEC-CC--CEEEEEEEETTE-EEEEEECCC--------------------SCHHHHHHHHHT-THHHHT
T ss_pred CCceEeEEEEEEEC-CC-CCEEEEEEEECCc-EEEEEecCC--------------------CChHHHHHHHHH-HHHHhC
Confidence 45899999999996 43 4589999999999 999977432 124666667776 999999
Q ss_pred CCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeec
Q 043137 81 GKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVIN 160 (445)
Q Consensus 81 G~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~ 160 (445)
|+||.+++.+|+.|.+...++. +.+.++.+|++|||+||||+.||.+|+|||+||| |..++++|+ |++++
T Consensus 60 G~d~~~~~~i~~~l~~~~~~~~-----~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~lLG---g~~~~~vp~--y~~~~ 129 (410)
T 2qq6_A 60 GEDPRDVERLYEKMRRWNIFTG-----GQAGAVITALSGIETALWDLAGKLQGVPVYRLLG---GAFRRRVRL--YADCN 129 (410)
T ss_dssp TCCTTCHHHHHHHHHHHTTTTT-----SSSSHHHHHHHHHHHHHHHHHHHHHTSCGGGGTT---CCSCSEEEE--EEECC
T ss_pred CCCccHHHHHHHHHHHhhhccc-----CCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHcC---CCccCceeE--EEecc
Confidence 9999999999999983221211 1345667899999999999999999999999999 976666665 55554
Q ss_pred -C-cccCCCCc-ccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhc----CCCCcccCCCCCCCC--CccChHHHHH
Q 043137 161 -G-GSHAGNKL-AMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKY----GQDATNVGDEGGFAP--NIQENKEGLE 231 (445)
Q Consensus 161 -g-g~~~~~~~-~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~----G~~~~~~~~~g~~~~--~~~~~~~~l~ 231 (445)
| +.|+.+.+ ++++++..| +..++++.+...++|+.+| .|. |..... +.|++.+ +++.+.+.++
T Consensus 130 ~g~~~h~~~~~~~~~~~~~~~--~~~~~~a~~~~~~Gf~~vK----ik~~~~~G~~~~~--~~G~~~~~~~~~~~~e~v~ 201 (410)
T 2qq6_A 130 AGTVDAAAHHIEGGLFEEGSN--EEYIAVAREAVERGFDAIK----LDVDDITGPLHRD--FWNGAISPREHEAMVARVA 201 (410)
T ss_dssp CSEECTTCCEEECCTTCSTHH--HHHHHHHHHHHHTTCSEEE----EECCCSSSTTCSC--SSSCCCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccCCH--HHHHHHHHHHHHcCCCEEE----eeccccCCcccCC--cCccccchhhHHHHHHHHH
Confidence 3 44443322 345554322 3445566666556666654 333 321111 2344443 2233445555
Q ss_pred HHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHH
Q 043137 232 LLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEH 311 (445)
Q Consensus 232 ~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~ 311 (445)
++|+++ | +++.|++|+| ++||.+++++++ +.+++|++.|||||++++|+++
T Consensus 202 avRea~---G--~d~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~i~~iEeP~~~~d~~~ 252 (410)
T 2qq6_A 202 AVREAV---G--PEVEVAIDMH-----------------------GRFDIPSSIRFA-RAMEPFGLLWLEEPTPPENLDA 252 (410)
T ss_dssp HHHHHH---C--SSSEEEEECT-----------------------TCCCHHHHHHHH-HHHGGGCCSEEECCSCTTCHHH
T ss_pred HHHHhc---C--CCCEEEEECC-----------------------CCCCHHHHHHHH-HHHhhcCCCeEECCCChhhHHH
Confidence 555554 6 5899999993 568889999985 5689999999999999999999
Q ss_pred HHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH-
Q 043137 312 YAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF- 390 (445)
Q Consensus 312 ~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~- 390 (445)
+++|+++++ +||++||+. .++++++++++.+++|++++|++++||||++++++++|+++|+++++ |++. +.++.
T Consensus 253 ~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~ia~~A~~~g~~~~~-h~~~-s~i~~a 327 (410)
T 2qq6_A 253 LAEVRRSTS--TPICAGENV-YTRFDFRELFAKRAVDYVMPDVAKCGGLAEAKRIANLAELDYIPFAP-HNVS-SPVGTV 327 (410)
T ss_dssp HHHHHTTCS--SCEEECTTC-CSHHHHHHHHHTTCCSEECCBHHHHTHHHHHHHHHHHHHTTTCCBCC-BCCS-CHHHHH
T ss_pred HHHHHhhCC--CCEEeCCCc-CCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEee-cCCC-cHHHHH
Confidence 999999988 999999985 57999999999999999999999999999999999999999999877 5444 76664
Q ss_pred -HHHHHhhh
Q 043137 391 -IADLSVGL 398 (445)
Q Consensus 391 -~~~la~a~ 398 (445)
.+||+.++
T Consensus 328 a~~hlaaa~ 336 (410)
T 2qq6_A 328 AAAHVCAAV 336 (410)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHhC
Confidence 45555554
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-49 Score=402.01 Aligned_cols=311 Identities=16% Similarity=0.221 Sum_probs=234.6
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGK 82 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~ 82 (445)
||||+|++..+ +.++..++|+|+||+|++|||++... + . ..++...|++.|+|.|+|+
T Consensus 24 mkIt~v~~~~~--~~~~~~v~V~v~td~G~~G~GE~~~~---~--------------~---~~~~~~~i~~~l~p~LiG~ 81 (425)
T 3vcn_A 24 LKIIDAKVIVT--CPGRNFVTLKITTEDGITGVGDATLN---G--------------R---ELSVVSFLQDHMVPSLIGR 81 (425)
T ss_dssp CBEEEEEEEEE--CSSSCEEEEEEEETTSCEEEEECCCT---T--------------C---HHHHHHHHHHTTHHHHTTC
T ss_pred CEEEEEEEEEE--cCCCcEEEEEEEECCCCEEEEeccCC---C--------------C---hHHHHHHHHHHHHHHhCCC
Confidence 89999998766 33457899999999999999976431 1 0 2344556777899999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCc
Q 043137 83 DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGG 162 (445)
Q Consensus 83 d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg 162 (445)
||.+++++|+.|++.. +|+.+.+..+|+|||||||||+.||.+|+|||+||| |+.++++|++.. +++.
T Consensus 82 dp~~ie~i~~~~~~~~-------~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~y~~--~~~~ 149 (425)
T 3vcn_A 82 DAHQIEDIWQFFYRGS-------YWRGGPVAMTALAAVDMALWDIKGKVAGLPVYQLLG---GACRTGVTVYGH--ANGE 149 (425)
T ss_dssp BTTCHHHHHHHHHHHT-------SSCCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTT---CCSSSSEEEEEE--EEES
T ss_pred ChhhHHHHHHHHHhhc-------ccCCchHHHHHHHHHHHHHHHHhHHHcCCcHHHHcC---CCCCCeeeEEEe--CCCC
Confidence 9999999999998422 122344456899999999999999999999999999 988888888543 2211
Q ss_pred ccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCC----cccCCCC-CCCC------C---------
Q 043137 163 SHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDA----TNVGDEG-GFAP------N--------- 222 (445)
Q Consensus 163 ~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~----~~~~~~g-~~~~------~--------- 222 (445)
+ +++..+++.+...++|+++| .|+|... ..+...+ .+.+ .
T Consensus 150 -------~---------~e~~~~~a~~~~~~Gf~~iK----lKvg~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~ 209 (425)
T 3vcn_A 150 -------T---------IEDTIAEAVKYKAMGYKAIR----LQTGVPGLASTYGVSKDKMFYEPADNDLPTENIWSTAKY 209 (425)
T ss_dssp -------S---------HHHHHHHHHHHHHTTCSEEE----EEECCTTCSCCTTCSSCSSCCCCCCBSSCCEEEECHHHH
T ss_pred -------C---------HHHHHHHHHHHHHcCCCEEE----EeecCccccccccccccccccCcccccccccccccchhH
Confidence 1 12334555555556776664 5555310 0000000 0011 1
Q ss_pred ccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEEC
Q 043137 223 IQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIED 302 (445)
Q Consensus 223 ~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEd 302 (445)
++.+.++++++|+++ | +++.|++|+ |++||.++++++ .+.++++++.||||
T Consensus 210 ~~~d~e~v~avR~a~---G--~d~~l~vDa-----------------------N~~~~~~~A~~~-~~~L~~~~i~~iEq 260 (425)
T 3vcn_A 210 LNSVPKLFERAREVL---G--WDVHLLHDV-----------------------HHRLTPIEAARL-GKDLEPYRLFWLED 260 (425)
T ss_dssp HTTTHHHHHHHHHHH---C--SSSEEEEEC-----------------------TTCCCHHHHHHH-HHHHGGGCCSEEEC
T ss_pred HHHHHHHHHHHHHHc---C--CCCEEEEEC-----------------------CCCCCHHHHHHH-HHHHHhcCCCEEEC
Confidence 344567777777666 5 589999999 367899999987 56789999999999
Q ss_pred CCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC
Q 043137 303 PFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 303 P~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~ 382 (445)
|++++|++++++|+++++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++++++
T Consensus 261 P~~~~d~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 337 (425)
T 3vcn_A 261 SVPAENQAGFRLIRQHTT--TPLAVGEIF-AHVWDAKQLIEEQLIDYLRATVLHAGGITNLKKIAAFADLHHVKTGCHGA 337 (425)
T ss_dssp CSCCSSTTHHHHHHHHCC--SCEEECTTC-CSGGGTHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHGGGTCEECCCCC
T ss_pred CCChhhHHHHHHHHhcCC--CCEEeCCCc-CCHHHHHHHHHcCCCCeEecChhhcCCHHHHHHHHHHHHHcCCEEeeccC
Confidence 999999999999999998 999999985 67999999999999999999999999999999999999999999866554
Q ss_pred CCCChhhH--HHHHHhhhc
Q 043137 383 SGETEDTF--IADLSVGLA 399 (445)
Q Consensus 383 ~~et~~~~--~~~la~a~~ 399 (445)
..++.++. .+||+.++.
T Consensus 338 ~~~s~ig~aA~~hlaaa~p 356 (425)
T 3vcn_A 338 TDLSPVTMAAALHFDMSIT 356 (425)
T ss_dssp TTSCHHHHHHHHHHHHTCS
T ss_pred CcccHHHHHHHHHHHHhCC
Confidence 33676654 455555443
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-49 Score=403.77 Aligned_cols=314 Identities=17% Similarity=0.195 Sum_probs=230.6
Q ss_pred Cc-eEEEEEEEEEEecCCCCceEEEEEEeCC-CceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhh
Q 043137 1 MA-ITITAVKARQIFDSRGNPTVEVDVTTSD-GHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPA 78 (445)
Q Consensus 1 ~~-mkI~~v~~~~v~~~~g~~~v~V~v~td~-G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~ 78 (445)
|+ ||||+|++..+. ......++|+|+||+ |++|||++... ++ ..++...|++.|+|.
T Consensus 24 ~~~mkIt~v~~~~~~-~~~~~~v~V~v~Td~~Gi~G~GE~~~~-----------------~~---~~~~~~~i~~~l~p~ 82 (440)
T 3t6c_A 24 MSNLFITNVKTILTA-PGGIDLVVVKIETNEPGLYGLGCATFT-----------------QR---IYAVQSAIDEYLAPF 82 (440)
T ss_dssp --CCCEEEEEEEEEC-TTSSCEEEEEEEESSTTCEEEEECCCG-----------------GG---HHHHHHHHHTTHHHH
T ss_pred CCCCEEEEEEEEEEC-CCCceEEEEEEEEcCCCCEEEEeeccC-----------------CC---HHHHHHHHHHHHHHH
Confidence 45 899999997662 222367999999999 99999976431 11 234455677779999
Q ss_pred hcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEe
Q 043137 79 LAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNV 158 (445)
Q Consensus 79 LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~ 158 (445)
|+|+||.+++++|+.|++.. +|+.+.+..+|+||||+||||+.||.+|+|||+||| |+.++++|++. .
T Consensus 83 LiG~dp~~ie~i~~~~~~~~-------~~~~g~~~~~A~saID~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~y~--~ 150 (440)
T 3t6c_A 83 LIGKDPARIEDIWQSAAVSG-------YWRNGPVMNNALSGIDMALWDIKGKQAGLPVYELLG---GKCRDGIALYV--H 150 (440)
T ss_dssp HTTCCTTCHHHHHHHHHHTT-------SCCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSCSSEEEEE--E
T ss_pred HcCCChhhHHHHHHHHHHhc-------ccCCCcchhhHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCeeEEEE--E
Confidence 99999999999999998321 122344556899999999999999999999999999 98888888744 3
Q ss_pred ecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCc-----------ccCCCCCCC-------
Q 043137 159 INGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDAT-----------NVGDEGGFA------- 220 (445)
Q Consensus 159 ~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~-----------~~~~~g~~~------- 220 (445)
+++. +. ++.++++.+...++|+++| .|+|.... ++..+.++.
T Consensus 151 ~~~~-------~~---------e~~~~~a~~~~~~Gf~~~K----~KvG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 210 (440)
T 3t6c_A 151 TDGA-------DE---------VEVEDSARAKMEEGYQYIR----CQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRT 210 (440)
T ss_dssp ECCS-------SH---------HHHHHHHHHHHHTTCSEEE----ECSSSSTTCCBCCHHHHSSCBCCCSSCCCCCCCSS
T ss_pred CCCC-------CH---------HHHHHHHHHHHHcCCCEEE----EeeccCCcccccccccccccccccccccccccccc
Confidence 3221 11 2234455555555676654 45542110 000000000
Q ss_pred --CC--------ccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHH
Q 043137 221 --PN--------IQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKS 290 (445)
Q Consensus 221 --~~--------~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~ 290 (445)
+. ++.+.++++++|+++ | +++.|++|+ |++||.++++++ .+
T Consensus 211 ~~~~~~~~~~~~~~~d~~~v~avR~a~---G--~d~~L~vDa-----------------------N~~~~~~~A~~~-~~ 261 (440)
T 3t6c_A 211 KAPGIYFDPEAYAKSIPRLFDHLRNKL---G--FSVELLHDA-----------------------HERITPINAIHM-AK 261 (440)
T ss_dssp CCSSEECCHHHHHHHHHHHHHHHHHHH---C--SSSEEEEEC-----------------------TTCSCHHHHHHH-HH
T ss_pred ccccccccchhhHHHHHHHHHHHHHhc---C--CCCeEEEEC-----------------------CCCCCHHHHHHH-HH
Confidence 10 122344455555544 5 589999999 367899999987 55
Q ss_pred hhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHH
Q 043137 291 FISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMS 370 (445)
Q Consensus 291 ~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A 370 (445)
.++++++.|||||++++|++++++|+++++ +||++||+. .++++++++++.+++|++|||++++||||++++++++|
T Consensus 262 ~L~~~~i~~iEeP~~~~d~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A 338 (440)
T 3t6c_A 262 ALEPYQLFFLEDPVAPENTEWLKMLRQQSS--TPIAMGELF-VNVNEWKPLIDNKLIDYIRCHISSIGGITPAKKIAIYS 338 (440)
T ss_dssp HTGGGCCSEEECSSCGGGGGGHHHHHHHCC--SCEEECTTC-CSHHHHHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHH
T ss_pred HhhhcCCCEEECCCChhhHHHHHHHHhhcC--CCEEeCccc-CCHHHHHHHHHcCCccceeechhhhCCHHHHHHHHHHH
Confidence 689999999999999999999999999998 999999985 67999999999999999999999999999999999999
Q ss_pred HHcCCcEEecCCCCCChhhH--HHHHHhhhc
Q 043137 371 KQAGWGVMASHRSGETEDTF--IADLSVGLA 399 (445)
Q Consensus 371 ~~~g~~~~~~~~~~et~~~~--~~~la~a~~ 399 (445)
+++|++++++++..++.++. .+||+.++.
T Consensus 339 ~~~gi~~~~h~~~~~s~Ig~aa~~hlaaa~p 369 (440)
T 3t6c_A 339 ELNGVRTAWHSPGDISPIGVCANMHLDLSSP 369 (440)
T ss_dssp HHTTCEECCCCSSSSCHHHHHHHHHHHHHCT
T ss_pred HHcCCEEEeccCCCccHHHHHHHHHHHHhCC
Confidence 99999986655434676654 556655543
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-49 Score=402.23 Aligned_cols=311 Identities=14% Similarity=0.219 Sum_probs=231.7
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGK 82 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~ 82 (445)
||||+|++..+ +.++..++|+|+||+|++|||++... + . ..++...|++.|+|.|+|+
T Consensus 23 mkIt~v~~~~~--~~~~~~v~V~v~td~Gi~G~GE~~~~---~--------------~---~~~~~~~i~~~l~p~LiG~ 80 (424)
T 3v3w_A 23 MKIVDAKVIVT--CPGRNFVTLKIVTDQGIYGIGDATLN---G--------------R---EKSVVSYLEDYLIPVLIGR 80 (424)
T ss_dssp CCEEEEEEEEE--CSSSCEEEEEEEETTSCEEEEECCCT---T--------------C---HHHHHHHHHHTHHHHHTTS
T ss_pred CEEEEEEEEEE--cCCCCEEEEEEEECCCCEEEEeccCC---C--------------C---hHHHHHHHHHHHHHHhcCC
Confidence 89999998766 23457899999999999999976431 1 0 2344556777899999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCc
Q 043137 83 DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGG 162 (445)
Q Consensus 83 d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg 162 (445)
||.+++++|+.|++.. + |+.+.+..+|+|||||||||+.||.+|+|||+||| |+.++++|++.. +++.
T Consensus 81 dp~~ie~i~~~~~~~~-----~--~~~g~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~y~~--~~~~ 148 (424)
T 3v3w_A 81 DPQQIEDIWQFFYRGA-----Y--WRRGPVGMTALAAIDVALWDIKAKLANMPLYQLLG---GKSRERILSYTH--ANGK 148 (424)
T ss_dssp CTTCHHHHHHHHHHHT-----S--SCCCHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHT---CCSCSSEEEEEE--EEES
T ss_pred ChhhHHHHHHHHHhcc-----c--cCCCchHHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CcCCCceeEEEe--CCCC
Confidence 9999999999998422 1 22344456899999999999999999999999999 988888888543 2211
Q ss_pred ccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCc--ccCC--C-CCCC------CC---------
Q 043137 163 SHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDAT--NVGD--E-GGFA------PN--------- 222 (445)
Q Consensus 163 ~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~--~~~~--~-g~~~------~~--------- 222 (445)
+ +++..+++.+...++|+++| .|+|.... ..+. . ..+. |.
T Consensus 149 -------~---------~e~~~~~a~~~~~~Gf~~iK----lKvG~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~ 208 (424)
T 3v3w_A 149 -------D---------LDSTLEAVRKAKDKGYKAIR----VQCGIPGIAKTYGVSTNTKSYEPADADLPSVEVWSTEKY 208 (424)
T ss_dssp -------S---------HHHHHHHHHHHHHTTCSEEE----EEECCTTCSCCTTCC-----CCSCCBSSCCEEEECHHHH
T ss_pred -------C---------HHHHHHHHHHHHHcCCCEEE----EeccCccccccccccccccccccccccccccccccchhH
Confidence 1 12334555555556676654 45552100 0000 0 0001 11
Q ss_pred ccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEEC
Q 043137 223 IQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIED 302 (445)
Q Consensus 223 ~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEd 302 (445)
++.+.++++++|+++ | +++.|++|+ |++||.++++++ .+.++++++.||||
T Consensus 209 ~~~d~e~v~avR~av---G--~d~~l~vDa-----------------------N~~~~~~~A~~~-~~~L~~~~i~~iEq 259 (424)
T 3v3w_A 209 LNYIPDVFAAVRKEF---G--PDIHLLHDV-----------------------HHRLTPIEAARL-GKALEPYHLFWMED 259 (424)
T ss_dssp HHHHHHHHHHHHHHH---C--SSSEEEEEC-----------------------TTCCCHHHHHHH-HHHHGGGCCSEEEC
T ss_pred HHHHHHHHHHHHHHc---C--CCCcEEEeC-----------------------CCCCCHHHHHHH-HHHHHhcCCCEEEC
Confidence 222344455555544 6 589999999 367899999987 56789999999999
Q ss_pred CCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC
Q 043137 303 PFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 303 P~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~ 382 (445)
|++++|++++++|+++++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++++++
T Consensus 260 P~~~~d~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~ga~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 336 (424)
T 3v3w_A 260 AVPAENQESFKLIRQHTT--TPLAVGEVF-NSIHDCRELIQNQWIDYIRTTIVHAGGISQMRRIADFASLFHVRTGFHGA 336 (424)
T ss_dssp CSCCSSTTHHHHHHHHCC--SCEEECTTC-CSGGGTHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEEEECCC
T ss_pred CCChHhHHHHHHHHhhCC--CCEEEccCc-CCHHHHHHHHHcCCCCeEeecchhcCCHHHHHHHHHHHHHcCCEEEecCC
Confidence 999999999999999998 999999985 67999999999999999999999999999999999999999999877664
Q ss_pred CCCChhh--HHHHHHhhhc
Q 043137 383 SGETEDT--FIADLSVGLA 399 (445)
Q Consensus 383 ~~et~~~--~~~~la~a~~ 399 (445)
..++.++ +.+||+.++.
T Consensus 337 ~~~s~ig~aA~~hlaaa~p 355 (424)
T 3v3w_A 337 TDLSPVCMGAALHFDYWVP 355 (424)
T ss_dssp TTSCHHHHHHHHHHHHHCT
T ss_pred CcccHHHHHHHHHHHHhCC
Confidence 3367665 4556655543
|
| >4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=396.35 Aligned_cols=302 Identities=15% Similarity=0.179 Sum_probs=227.2
Q ss_pred eEEEEEEEEEEe--------cCCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIF--------DSRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~--------~~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
||||+|+++.+. .+.+ +..++|+|+||+|++|||++... ......
T Consensus 1 MKIt~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~i~td~G~~G~GE~~~~-----------------------~~~~~~ 57 (378)
T 4hpn_A 1 MKITAVRTHLLEHRLDTPFESASMRFDRRAHVLVEIECDDGTVGWGECLGP-----------------------ARPNAA 57 (378)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECSC-----------------------HHHHHH
T ss_pred CEEEEEEEEEEeccCCCCeECCCEEEEEEEEEEEEEEECCCCEEEEEecCC-----------------------cchHHH
Confidence 899999998773 2333 35689999999999999976431 111234
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
+.+.++|.|+|+||.+++.+|+.|++.+.. .+..++..+|++|||+||||+.||.+|+|||+||| |+.+++
T Consensus 58 ~~~~~~~~liG~d~~~~e~~~~~l~~~~~~------~~~~g~~~~A~said~AlwDl~gk~~g~Pl~~lLG---g~~~~~ 128 (378)
T 4hpn_A 58 VVQAYSGWLIGQDPRQTEKIWAVLYNALRD------QGQRGLSLTALSGIDIALWDIKGKHYGASISMLLG---GRWRES 128 (378)
T ss_dssp HHHHHHTTTTTSCTTCHHHHHHHHHHHTCT------TCSSTHHHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCSCSE
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhhh------cccccchHHHHHHHHHHHHHHhhhhccCccccccC---CccccC
Confidence 567899999999999999999999854322 12344556899999999999999999999999999 988888
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGL 230 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l 230 (445)
+|++... +.... +..+ ..+..+++.+...++|+++| .|.| .+.+.+.+++
T Consensus 129 ~~~y~~~----~~~~~---~~~~------~~~~~~~~~~~~~~Gf~~~K----~k~g-------------~~~~~di~~v 178 (378)
T 4hpn_A 129 VRAYATG----SFKRD---NVDR------VSDNASEMAERRAEGFHACK----IKIG-------------FGVEEDLRVI 178 (378)
T ss_dssp EEEEEEC----CCBCT---TCCH------HHHHHHHHHHHHHTTCSEEE----EECC-------------SCHHHHHHHH
T ss_pred cceeeee----ccccc---cchh------HHHHHHHHHHHHHhccceec----cccc-------------CChHHHHHHH
Confidence 8875432 21110 0100 11223334333334444332 3322 1223345556
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHH
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWE 310 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~ 310 (445)
+.+|+++ | +++.|++|+ |+.||.++++++ .+.++++++.|||||++++|++
T Consensus 179 ~avr~~~---g--~~~~l~vDa-----------------------N~~~~~~~A~~~-~~~l~~~~i~~iEeP~~~~d~~ 229 (378)
T 4hpn_A 179 AAVREAI---G--PDMRLMIDA-----------------------NHGYTVTEAITL-GDRAAGFGIDWFEEPVVPEQLD 229 (378)
T ss_dssp HHHHHHH---T--TTSEEEEEC-----------------------TTCCCHHHHHHH-HHHHGGGCCSCEECCSCTTCHH
T ss_pred HHHHHhc---C--CcEEEEEec-----------------------CcccCHHHHHHH-HhhhhhcccchhhcCCCccchh
Confidence 6555555 6 689999999 367899999998 4568999999999999999999
Q ss_pred HHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh-
Q 043137 311 HYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT- 389 (445)
Q Consensus 311 ~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~- 389 (445)
++++|+++++ +||++||+. .++++++++++.+++|++|||++++||||++++++++|+++|+++ ++|+ .++..+
T Consensus 230 ~~~~l~~~~~--ipIa~dE~~-~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~ia~~A~~~gi~v-~~h~-~~~~i~~ 304 (378)
T 4hpn_A 230 AYARVRAGQP--IPVAGGETW-HGRYGMWQALSAGAVDILQPDLCGCGGFSEIQKIATLATLHGVRI-VPHV-WGTGVQI 304 (378)
T ss_dssp HHHHHHHHSS--SCEEECTTC-CHHHHHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHHHHHTCEE-CCBC-CSSHHHH
T ss_pred hhHHHHhhCC--ceeeCCcCc-cchHhHHHHHHcCCCCEEeeCCeeCCChhHHHHHHHHHHHcCCeE-EeCC-CCcHHHH
Confidence 9999999998 999999985 569999999999999999999999999999999999999999996 7885 456554
Q ss_pred -HHHHHHhhhcC
Q 043137 390 -FIADLSVGLAT 400 (445)
Q Consensus 390 -~~~~la~a~~~ 400 (445)
+.+|+++++..
T Consensus 305 aa~~h~~aa~~~ 316 (378)
T 4hpn_A 305 AAALQFMAAMTP 316 (378)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHcCc
Confidence 55666666543
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-49 Score=397.72 Aligned_cols=298 Identities=18% Similarity=0.252 Sum_probs=230.5
Q ss_pred CceEEEEEEEEEEe--------cCCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHH
Q 043137 1 MAITITAVKARQIF--------DSRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAV 68 (445)
Q Consensus 1 ~~mkI~~v~~~~v~--------~~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~ 68 (445)
|.|||++|+++.+. ++.+ +..++|+|+||+|++|||+++..+ .|++++..++.
T Consensus 1 m~MkI~~i~~~~~~~Pl~~p~~~a~~~~~~~~~~~V~v~td~G~~G~Ge~~~~~---------------~~~get~~~~~ 65 (379)
T 3r0u_A 1 MVSKIIDIKTSIIKIPLKRTFITAVRSTNHIDSLAVELTLDNGVKGYGVAPATT---------------AITGDTLQGMQ 65 (379)
T ss_dssp -CCBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECCH---------------HHHCCCHHHHH
T ss_pred CCCEEEEEEEEEEEeecCCceEccCceEEEeEEEEEEEEECCCCEEEEEEECCC---------------CccCCCHHHHH
Confidence 78999999998774 2333 356899999999999999764321 14466677777
Q ss_pred HHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCc
Q 043137 69 SNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKN 148 (445)
Q Consensus 69 ~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~ 148 (445)
..|++.++|.|+|+||.+++.+|+.|.+.+ ....+|++|||+||||+.||.+|+|||+||| |. +
T Consensus 66 ~~i~~~l~p~l~G~d~~~~~~~~~~~~~~~------------~~~~~A~said~ALwDl~gK~~g~Pv~~LLG---g~-r 129 (379)
T 3r0u_A 66 YIIREIFAPVILGSDLSDYKQTLELAFKKV------------MFNSAAKMAIDLAYHDLLAKEQDISVAKLLG---AK-A 129 (379)
T ss_dssp HHHHHTTHHHHTTCBGGGHHHHHHHHHTTC------------SSCHHHHHHHHHHHHHHHHHHTTSBHHHHTT---CC-C
T ss_pred HHHHHHhHHHhcCCCcccHHHHHHHHHHhc------------ccchHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-C
Confidence 788888999999999999999999988321 1125799999999999999999999999999 86 6
Q ss_pred ceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHH
Q 043137 149 LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKE 228 (445)
Q Consensus 149 ~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~ 228 (445)
+++|++.. ++.+ + ++..++++.+...++|+.+| .|+|. +.+.+.+
T Consensus 130 ~~v~~y~t--~g~~-------~---------~e~~~~~a~~~~~~Gf~~~K----lK~g~-------------~~~~d~~ 174 (379)
T 3r0u_A 130 NSIVTDVS--ISCG-------N---------VAETIQNIQNGVEANFTAIK----VKTGA-------------DFNRDIQ 174 (379)
T ss_dssp CEEEBCEE--ECCC-------C---------HHHHHHHHHHHHHTTCCEEE----EECSS-------------CHHHHHH
T ss_pred CeEEEEEE--ecCC-------C---------HHHHHHHHHHHHHcCCCEEe----eecCC-------------CHHHHHH
Confidence 78887543 2111 1 12223444444444555443 34331 2233455
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhcc--CCeeeEECCCCc
Q 043137 229 GLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISD--YPIVSIEDPFDQ 306 (445)
Q Consensus 229 ~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~--~~i~~iEdP~~~ 306 (445)
+++++|+++ | +++.|++|+ |++||.++++++ .+.+++ +++.|||||+++
T Consensus 175 ~v~avR~a~---g--~~~~L~vDa-----------------------N~~w~~~~A~~~-~~~l~~~~~~l~~iEeP~~~ 225 (379)
T 3r0u_A 175 LLKALDNEF---S--KNIKFRFDA-----------------------NQGWNLAQTKQF-IEEINKYSLNVEIIEQPVKY 225 (379)
T ss_dssp HHHHHHHHC---C--TTSEEEEEC-----------------------TTCCCHHHHHHH-HHHHHTSCCCEEEEECCSCT
T ss_pred HHHHHHHhc---C--CCCeEEEeC-----------------------CCCcCHHHHHHH-HHHHhhcCCCcEEEECCCCc
Confidence 555555443 4 489999999 367899999987 567899 899999999999
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCC
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGET 386 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et 386 (445)
+|++++++|+++++ +||++||+. +++++++++++.+++|++|+|++++||||++++++++|+++|+++++++ +.|+
T Consensus 226 ~d~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~a~d~v~~k~~~~GGi~~~~~ia~~A~~~gi~~~~~~-~~es 301 (379)
T 3r0u_A 226 YDIKAMAEITKFSN--IPVVADESV-FDAKDAERVIDEQACNMINIKLAKTGGILEAQKIKKLADSAGISCMVGC-MMES 301 (379)
T ss_dssp TCHHHHHHHHHHCS--SCEEESTTC-SSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECC-CSCC
T ss_pred ccHHHHHHHHhcCC--CCEEeCCcc-CCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEEEeC-CCcc
Confidence 99999999999998 999999985 6799999999999999999999999999999999999999999997765 5688
Q ss_pred hhh--HHHHHHhh
Q 043137 387 EDT--FIADLSVG 397 (445)
Q Consensus 387 ~~~--~~~~la~a 397 (445)
.++ +++|||++
T Consensus 302 ~i~~aa~~hlaaa 314 (379)
T 3r0u_A 302 PAGILATASFALA 314 (379)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 665 55666666
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=394.88 Aligned_cols=303 Identities=16% Similarity=0.182 Sum_probs=230.2
Q ss_pred CceEEEEEEEEEEecCC-------CCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHH
Q 043137 1 MAITITAVKARQIFDSR-------GNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNA 73 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~~-------g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~ 73 (445)
|.|||++|+++.+..+. ....++|+|+||+|++|||+.+. +...+...|++
T Consensus 1 ~~MkI~~i~~~~~~~P~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~----------------------~~~~~~~~i~~ 58 (374)
T 3sjn_A 1 MVLKITDIEVLHLRVPAMDADCEWGEDAVIVKVHTDKGIVGVGEADS----------------------SPLVVQACIEA 58 (374)
T ss_dssp -CCBEEEEEEEEEESSCTTSCCCTTSEEEEEEEEETTSCEEEEEESS----------------------CHHHHHHHHHC
T ss_pred CCcEEEEEEEEEEeccCcCCcCcccceEEEEEEEECCCCEEEEcCCC----------------------ChHHHHHHHHh
Confidence 78999999999985431 11238999999999999988321 23455556766
Q ss_pred h--------HhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccC
Q 043137 74 I--------IGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSG 145 (445)
Q Consensus 74 ~--------l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G 145 (445)
. ++|.|+|+||.+++++|+.|++.+... +++++..+|++|||+||||+.||.+|+|||+||| |
T Consensus 59 ~~~~~~~~~l~p~liG~d~~~~~~~~~~l~~~~~~~------~~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLG---g 129 (374)
T 3sjn_A 59 PQTNFYCNGLKRLLIGENALEIERLWNKMYWGSNYM------GRRGAGIHAISAIDIALWDIAGQFYGVPVHTLLG---G 129 (374)
T ss_dssp CCSBTTBCCHHHHHTTSBTTCHHHHHHHHHHHTTTT------CSSBHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---C
T ss_pred hhccchHhHHHHHHcCCCcccHHHHHHHHHHhhhhc------CCccHHHHHHHHHHHHHHHHHHhHcCCcHHHHcC---C
Confidence 6 999999999999999999998443221 2355667899999999999999999999999999 9
Q ss_pred CCcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccC
Q 043137 146 NKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQE 225 (445)
Q Consensus 146 ~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~ 225 (445)
+.++++|++ .+ + + . .+. ++...+++.+...++|+++| .|+|. .| .+.+.
T Consensus 130 ~~r~~v~~y-~~-~--~--~---~~~--------~e~~~~~a~~~~~~Gf~~iK----lk~g~-------~g---~~~~~ 178 (374)
T 3sjn_A 130 KYRDKIRCY-GT-F--I--P---ADK--------PEDNVAIVQGLKDQGFSSIK----FGGGV-------MG---DDPDT 178 (374)
T ss_dssp CSCSEEEEE-EE-E--C--C---CSS--------GGGGHHHHHHHHTTTCSEEE----EECTT-------TT---SCHHH
T ss_pred CcCCceeEE-ec-c--C--C---CCC--------HHHHHHHHHHHHHcCCCEEE----eccCC-------CC---CCHHH
Confidence 778888885 11 1 1 1 000 12234455554444565554 44441 11 12334
Q ss_pred hHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccC-HHHHHHHHHHhhccCCeeeEECCC
Q 043137 226 NKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKIS-GDALKDLYKSFISDYPIVSIEDPF 304 (445)
Q Consensus 226 ~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t-~~~ai~~~~~~l~~~~i~~iEdP~ 304 (445)
+.++++++|+++ | +++.|++|+ |++|| .++++++ .+.++++++.|||||+
T Consensus 179 d~~~v~avR~a~---g--~~~~l~vDa-----------------------n~~~~d~~~A~~~-~~~l~~~~i~~iEqP~ 229 (374)
T 3sjn_A 179 DYAIVKAVREAA---G--PEMEVQIDL-----------------------ASKWHTCGHSAMM-AKRLEEFNLNWIEEPV 229 (374)
T ss_dssp HHHHHHHHHHHH---C--SSSEEEEEC-----------------------TTTTCSHHHHHHH-HHHSGGGCCSEEECSS
T ss_pred HHHHHHHHHHHh---C--CCCeEEEEC-----------------------CCCCCCHHHHHHH-HHHhhhcCceEEECCC
Confidence 455565555554 6 589999999 36788 9999987 5678999999999999
Q ss_pred CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCC
Q 043137 305 DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSG 384 (445)
Q Consensus 305 ~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~ 384 (445)
+++|++++++|+++++ +||++||+. +++++++++++.+++|++|+|++++||||++++++++|+++|+++++++ +
T Consensus 230 ~~~~~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~-~- 304 (374)
T 3sjn_A 230 LADSLISYEKLSRQVS--QKIAGGESL-TTRYEFQEFITKSNADIVQPDITRCGGITEMKKIYDIAQMNGTQLIPHG-F- 304 (374)
T ss_dssp CTTCHHHHHHHHHHCS--SEEEECTTC-CHHHHHHHHHHHHCCSEECCBTTTSSHHHHHHHHHHHHHHHTCEECCBC-C-
T ss_pred CcccHHHHHHHHhhCC--CCEEeCCCc-CCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecC-C-
Confidence 9999999999999998 999999985 5699999999999999999999999999999999999999999986654 4
Q ss_pred CChhhHH--HHHHhhhc
Q 043137 385 ETEDTFI--ADLSVGLA 399 (445)
Q Consensus 385 et~~~~~--~~la~a~~ 399 (445)
++.++.+ +||++++.
T Consensus 305 ~~~i~~aa~~hlaaa~~ 321 (374)
T 3sjn_A 305 STGILLHASVHFLAACE 321 (374)
T ss_dssp SCHHHHHHHHHHHHTCT
T ss_pred CcHHHHHHHHHHHHhCC
Confidence 6766644 45555543
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-49 Score=401.65 Aligned_cols=311 Identities=16% Similarity=0.189 Sum_probs=231.9
Q ss_pred ceEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcC
Q 043137 2 AITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAG 81 (445)
Q Consensus 2 ~mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG 81 (445)
.||||+|++..+ +.++..++|+|+||+|++|||++... + . ..++...|++.|+|.|+|
T Consensus 16 ~mkIt~v~~~~~--~~~~~~~~V~v~td~G~~G~GE~~~~---~--------------~---~~~~~~~i~~~l~p~LiG 73 (418)
T 3r4e_A 16 HMKITAARVIIT--CPGRNFVTLKIETDQGVYGIGDATLN---G--------------R---ELSVVAYLQEHVAPCLIG 73 (418)
T ss_dssp CCCEEEEEEEEE--CSSSCEEEEEEEETTSCEEEEECCCT---T--------------C---HHHHHHHHHHTHHHHHTT
T ss_pred CCEEEEEEEEEE--cCCCcEEEEEEEECCCCEEEEeccCC---C--------------C---hHHHHHHHHHHHHHHhcC
Confidence 399999998765 33457899999999999999976431 1 0 234455677789999999
Q ss_pred CCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecC
Q 043137 82 KDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVING 161 (445)
Q Consensus 82 ~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~g 161 (445)
+||.+++++|+.|++.. + |+.+.+..+|+|||||||||+.||.+|+|||+||| |+.++++|++.. +++
T Consensus 74 ~dp~~ie~l~~~~~~~~-----~--~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~y~~--~~~ 141 (418)
T 3r4e_A 74 MDPRRIEDIWQYVYRGA-----Y--WRRGPVTMRAIAAVDMALWDIKAKMAGMPLYQLLG---GRSRDGIMVYGH--ANG 141 (418)
T ss_dssp SCTTCHHHHHHHHHHHT-----S--SCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHT---CCSCSSEEEEEE--EEE
T ss_pred CChhhHHHHHHHHHHhc-----c--cCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHhC---CccCCeeeEEEe--CCC
Confidence 99999999999998422 1 22344456899999999999999999999999999 988888888543 221
Q ss_pred cccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCccc--C---------C-CCCCCCC-------
Q 043137 162 GSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNV--G---------D-EGGFAPN------- 222 (445)
Q Consensus 162 g~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~--~---------~-~g~~~~~------- 222 (445)
. + +++..+++.+...++|+++| .|+|...... + . .++ .|.
T Consensus 142 ~-------~---------~e~~~~~a~~~~~~Gf~~~K----~k~G~~~~~~~~g~~~~~~~~~~~~~~-~p~~~~~~~~ 200 (418)
T 3r4e_A 142 S-------D---------IAETVEAVGHYIDMGYKAIR----AQTGVPGIKDAYGVGRGKLYYEPADAS-LPSVTGWDTR 200 (418)
T ss_dssp S-------S---------HHHHHHHHHHHHHTTCSEEE----EEECCTTC------------------C-CCCEEEECHH
T ss_pred C-------C---------HHHHHHHHHHHHHcCCCEEE----EecCCcccccccccccccccccccccc-ccccccccch
Confidence 1 1 12234455555555676654 4555311000 0 0 000 011
Q ss_pred --ccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeE
Q 043137 223 --IQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300 (445)
Q Consensus 223 --~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~i 300 (445)
++.+.++++++|+++ | +++.|++|+ |++||.++++++ .+.++++++.||
T Consensus 201 ~~~~~d~~~v~avR~a~---G--~d~~l~vDa-----------------------N~~~~~~~A~~~-~~~L~~~~i~~i 251 (418)
T 3r4e_A 201 KALNYVPKLFEELRKTY---G--FDHHLLHDG-----------------------HHRYTPQEAANL-GKMLEPYQLFWL 251 (418)
T ss_dssp HHHHHHHHHHHHHHHHH---C--SSSEEEEEC-----------------------TTCSCHHHHHHH-HHHHGGGCCSEE
T ss_pred hHHHHHHHHHHHHHHHc---C--CCCeEEEeC-----------------------CCCCCHHHHHHH-HHHHHhhCCCEE
Confidence 222344455555544 6 589999999 367899999987 567899999999
Q ss_pred ECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEec
Q 043137 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMAS 380 (445)
Q Consensus 301 EdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~ 380 (445)
|||++++|++++++|+++++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++++
T Consensus 252 EqP~~~~d~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~l~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h 328 (418)
T 3r4e_A 252 EDCTPAENQEAFRLVRQHTV--TPLAVGEIF-NTIWDAKDLIQNQLIDYIRATVVGAGGLTHLRRIADLASLYQVRTGCH 328 (418)
T ss_dssp ESCSCCSSGGGGHHHHHHCC--SCEEECTTC-CSGGGTHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHTTCEEEEC
T ss_pred ECCCCccCHHHHHHHHhcCC--CCEEEcCCc-CCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCEEeec
Confidence 99999999999999999998 999999985 679999999999999999999999999999999999999999998776
Q ss_pred CCCCCChhh--HHHHHHhhhc
Q 043137 381 HRSGETEDT--FIADLSVGLA 399 (445)
Q Consensus 381 ~~~~et~~~--~~~~la~a~~ 399 (445)
++..++.++ +.+||+.++.
T Consensus 329 ~~~~~s~ig~aA~~hlaaa~p 349 (418)
T 3r4e_A 329 GPTDLSPVTMGCALHFDTWVP 349 (418)
T ss_dssp CCTTSCHHHHHHHHHHHHHCT
T ss_pred CCCCccHHHHHHHHHHHHhCC
Confidence 643367655 4556665543
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-48 Score=398.82 Aligned_cols=317 Identities=13% Similarity=0.129 Sum_probs=230.9
Q ss_pred eEEEEEEEEEEecC----CCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhh
Q 043137 3 ITITAVKARQIFDS----RGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPA 78 (445)
Q Consensus 3 mkI~~v~~~~v~~~----~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~ 78 (445)
||||+|+++.+..+ .++..++|+|+||+|++|||++.... ++ ..++...|++.++|.
T Consensus 2 MkIt~i~~~~~~~p~~~~~~~~~v~V~v~Td~G~~G~GE~~~~~----------------~~---~~~v~~~i~~~l~p~ 62 (433)
T 3rcy_A 2 VKLRDLDIIVTAPPAPGWGGRYWILVKLTTDDGITGWGECYAAS----------------VG---PEAMRAVIEDVFARH 62 (433)
T ss_dssp CCEEEEEEEEECCCTTCTTCSCEEEEEEEETTSCEEEEEECCCS----------------SC---HHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCccCCceEEEEEEEECCCCEEEEeccCCC----------------CC---HHHHHHHHHHHHHHH
Confidence 89999999988532 14578999999999999999754311 11 244455677889999
Q ss_pred hcCCCCCCHHHHHHHHHHHhccCCCcccccccc-cchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEE
Q 043137 79 LAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQK-LGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFN 157 (445)
Q Consensus 79 LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~-~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~ 157 (445)
|+|+||.+++++|+.|++.. + |.++. +..+|+|||||||||+.||.+|+|||+||| |+.++++|++.+.
T Consensus 63 LiG~dp~~ie~~~~~l~~~~-----~--~~~g~~~~~~A~saID~ALWDl~gK~~g~Pv~~LLG---G~~r~~v~~y~~~ 132 (433)
T 3rcy_A 63 MEGENPENIELMFRRVYSSG-----F--TQRPDLTAIGAFSGLEIACWDILGKARGRPVWALLG---GKMNPRIRAYTYL 132 (433)
T ss_dssp TTTSCTTCHHHHHHHHHHTT-----T--CCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTT---CCSCSSEEEEEEC
T ss_pred hCCCCcccHHHHHHHHHhcc-----c--ccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCeEEEEEEE
Confidence 99999999999999998321 1 21222 456799999999999999999999999999 9888888875431
Q ss_pred ee-cCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCC---CccChHHHHHHH
Q 043137 158 VI-NGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAP---NIQENKEGLELL 233 (445)
Q Consensus 158 ~~-~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~---~~~~~~~~l~~l 233 (445)
.. +|... ..... .++..++++.+...++|+++| .|.|..... ..+..+ +++.+.++++++
T Consensus 133 ~~~~g~~~-~~~~~--------~~e~~~~~a~~~~~~Gf~~iK----lk~g~~~~~---~~G~~~~~~~~~~d~e~v~av 196 (433)
T 3rcy_A 133 YPLPHHPI-TPFWT--------SADMAAESAADCVARGYTAVK----FDPAGPYTL---RGGHMPAMTDISLSVEFCRKI 196 (433)
T ss_dssp CCCTTSCH-HHHTT--------CHHHHHHHHHHHHHTTCSEEE----ECCSCCCBT---TCCBCCCHHHHHHHHHHHHHH
T ss_pred cccCCccc-ccCCC--------CHHHHHHHHHHHHHcCCCEEE----EcCCCCccc---ccCCCcchhhHHHHHHHHHHH
Confidence 10 22000 00000 112334455555555666554 444421110 011122 122334455555
Q ss_pred HHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHH
Q 043137 234 NTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYA 313 (445)
Q Consensus 234 ~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~ 313 (445)
|+++ | +++.|++|+ |++||.++++++ .+.++++++.|||||++++|+++++
T Consensus 197 R~av---G--~d~~L~vDa-----------------------n~~~t~~~A~~~-~~~Le~~~i~~iEeP~~~~~~~~~~ 247 (433)
T 3rcy_A 197 RAAV---G--DKADLLFGT-----------------------HGQFTTAGAIRL-GQAIEPYSPLWYEEPVPPDNVGAMA 247 (433)
T ss_dssp HHHH---T--TSSEEEECC-----------------------CSCBCHHHHHHH-HHHHGGGCCSEEECCSCTTCHHHHH
T ss_pred HHHh---C--CCCeEEEeC-----------------------CCCCCHHHHHHH-HHHhhhcCCCEEECCCChhhHHHHH
Confidence 5544 6 589999999 367889999987 5678999999999999999999999
Q ss_pred HHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHH
Q 043137 314 KLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIAD 393 (445)
Q Consensus 314 ~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~ 393 (445)
+|+++++ +||++||+. +++++++++++.+++|++|+|++++||||++++++++|+++|+++++ |+ .++.++.++.
T Consensus 248 ~l~~~~~--iPIa~dE~~-~~~~~~~~~l~~g~~D~v~~d~~~~GGit~~~kia~lA~~~gv~~~~-h~-~~s~i~~aa~ 322 (433)
T 3rcy_A 248 QVARAVR--IPVATGERL-TTKAEFAPVLREGAAAILQPALGRAGGIWEMKKVAAMAEVYNAQMAP-HL-YAGPVEWAAN 322 (433)
T ss_dssp HHHHHSS--SCEEECTTC-CSHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHHHHHHTTTCEECC-CC-SSCHHHHHHH
T ss_pred HHHhccC--CCEEecCCC-CCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHcCCEEEe-cC-CCCHHHHHHH
Confidence 9999998 999999985 67999999999999999999999999999999999999999999854 54 4777665444
Q ss_pred HHhhh
Q 043137 394 LSVGL 398 (445)
Q Consensus 394 la~a~ 398 (445)
++++.
T Consensus 323 lhlaa 327 (433)
T 3rcy_A 323 VHFAA 327 (433)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=398.99 Aligned_cols=302 Identities=13% Similarity=0.133 Sum_probs=225.7
Q ss_pred ceEEEEEEEEEEecCCCC-------------------------------ceEEEEEEeCCCceEEEeccCCCccccccce
Q 043137 2 AITITAVKARQIFDSRGN-------------------------------PTVEVDVTTSDGHVARAAVPSGASTGIYEAL 50 (445)
Q Consensus 2 ~mkI~~v~~~~v~~~~g~-------------------------------~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~ 50 (445)
..||++|++..|..+... .+|+|||+||+|++|||++....
T Consensus 25 ~~~I~~i~~~~v~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~r~VlVri~td~G~~G~GE~~~~~-------- 96 (412)
T 4h1z_A 25 SDRVKKIESFTLTLPRETPYLGKPRPGEEPNGRGYLVRKANRTVYPTFDRSVLVRIETENGAVGWGETYGLV-------- 96 (412)
T ss_dssp CCCEEEEEEEEEECC------------CCCCTTSEEECTTTCCEEESSCEEEEEEEEETTCCEEEEEEECSS--------
T ss_pred cceeeEEEEEEEecccCCccccccccccccccccceeeccCcccCCCCCCcEEEEEEECCCCEEEEecCCCC--------
Confidence 349999999887543211 23899999999999999764211
Q ss_pred eeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHH
Q 043137 51 ELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAH 130 (445)
Q Consensus 51 ~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk 130 (445)
+.....+.+++.|+|.|+|+||.+++.+|+.|++.+..... .+++..+|+||||+||||+.||
T Consensus 97 ------------~~~~~~~~i~~~lap~liG~dp~~~~~i~~~l~~~~~~~~~-----~~g~~~~A~saiD~ALwDl~gK 159 (412)
T 4h1z_A 97 ------------APRATMEIIDDLLADFTIGRDPFDAAAIHDDLYDLMRVRGY-----TGGFYVDALAAIDIALWDLAGK 159 (412)
T ss_dssp ------------CHHHHHHHHHHTHHHHHTTSCGGGHHHHHHHHHTTTGGGTC-----CSHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhccc-----ccchHHHHHHHHHHHHHHHHHH
Confidence 13445667888999999999999999999999832221110 2334467999999999999999
Q ss_pred hcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 043137 131 VKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDA 210 (445)
Q Consensus 131 ~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~ 210 (445)
.+|+|||+||| |..++++|+++.. . .. +. .+...+.+.+...++|+++| .|.|
T Consensus 160 ~~g~Pl~~LLG---G~~~~~v~~y~s~----~-~~----~~--------~~~~~~~a~~~~~~G~~~~K----~k~g--- 212 (412)
T 4h1z_A 160 LAGLPVCKLLG---GQRRDRIAAYISG----L-PE----DT--------RAKRAELAAAWQAKGFSSFK----FASP--- 212 (412)
T ss_dssp HHTCBGGGGTT---CCCCSEEEEEECC----C-CC----SS--------HHHHHHHHHHHHHTTCCEEE----EEGG---
T ss_pred HcCCCHHHhcC---CCCCceEEEEecc----C-CC----Cc--------HHHHHHHHHHHHhcCcceec----cccc---
Confidence 99999999999 9888888875421 1 10 11 11122333333333454433 2222
Q ss_pred cccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHH
Q 043137 211 TNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKS 290 (445)
Q Consensus 211 ~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~ 290 (445)
...+.+.++++++|+++ | +++.|++|+ |+.||.++++++ .+
T Consensus 213 ----------~~~~~~~~~v~~vR~~~---g--~~~~l~vDa-----------------------N~~~~~~~A~~~-~~ 253 (412)
T 4h1z_A 213 ----------VADDGVAKEMEILRERL---G--PAVRIACDM-----------------------HWAHTASEAVAL-IK 253 (412)
T ss_dssp ----------GCTTCHHHHHHHHHHHH---C--SSSEEEEEC-----------------------CSCCCHHHHHHH-HH
T ss_pred ----------cchhhHHHHHHHHHhcc---C--CeEEEEecc-----------------------ccCCCHHHHHHH-HH
Confidence 11134567777777665 5 689999999 367899999988 55
Q ss_pred hhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHH
Q 043137 291 FISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMS 370 (445)
Q Consensus 291 ~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A 370 (445)
.++++++.|||||++++|++++++|+++++ +||++||+. .++++++++++.+++|++|+|+++ ||||++++++++|
T Consensus 254 ~l~~~~l~~iEqP~~~~d~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~a~div~~d~~~-GGit~~~kia~~A 329 (412)
T 4h1z_A 254 AMEPHGLWFAEAPVRTEDIDGLARVAASVS--TAIAVGEEW-RTVHDMVPRVARRALAIVQPEMGH-KGITQFMRIGAYA 329 (412)
T ss_dssp HHGGGCEEEEECCSCTTCHHHHHHHHHHCS--SEEEECTTC-CSHHHHHHHHHTTCCSEECCCHHH-HHHHHHHHHHHHH
T ss_pred hhcccccceecCCCCccchHHHHHHHhhcC--CccccCCcc-cchHhHHHHHHcCCCCEEEecCCC-CChHHHHHHHHHH
Confidence 689999999999999999999999999998 999999985 569999999999999999999986 9999999999999
Q ss_pred HHcCCcEEecCCCCCChhhH--HHHHHhhhc
Q 043137 371 KQAGWGVMASHRSGETEDTF--IADLSVGLA 399 (445)
Q Consensus 371 ~~~g~~~~~~~~~~et~~~~--~~~la~a~~ 399 (445)
+++|+++++ |.+.++.++. .+|++.++.
T Consensus 330 ~~~gi~v~~-h~~~~~~i~~aa~lhl~aa~~ 359 (412)
T 4h1z_A 330 HVHHIKVIP-HATIGAGIFLAASLQASAALA 359 (412)
T ss_dssp HHTTCEECC-CCCSSCSHHHHHHHHHHHHCT
T ss_pred HHCCCcEEe-cCCcchHHHHHHHHHHHHhCC
Confidence 999999855 5456776654 456555543
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=398.46 Aligned_cols=321 Identities=15% Similarity=0.225 Sum_probs=234.5
Q ss_pred CceEEEEEEEEEEecC--CCCc----eEEEEEEeCCCceEEEec-cCCCccccccceeeccCCCCCCCccHHHHHHHHHH
Q 043137 1 MAITITAVKARQIFDS--RGNP----TVEVDVTTSDGHVARAAV-PSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNA 73 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~--~g~~----~v~V~v~td~G~~G~g~~-~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~ 73 (445)
|.|||++|+++.+..+ .+.| +++|+|+||+|++|||++ +.. | .+...+...+++
T Consensus 1 m~MkI~~i~~~~~~~pl~~~~~~~~~~v~V~v~td~G~~G~Ge~~~~~---g----------------~~~~~~~~~i~~ 61 (410)
T 2gl5_A 1 MSLKITSIEVFDCELKKRDQTMSSYNPVLIRVNTDSGLSGIGEVGLAY---G----------------AGAKAGVGIIRD 61 (410)
T ss_dssp -CCCEEEEEEEECCGGGTCGGGTTCCCEEEEEEETTSCEEEEEESCSS---S----------------TTHHHHHHHHHH
T ss_pred CCceEEEEEEEEecccccccCcccccceEEEEEeCCCCEEEEeecCcC---C----------------CChHHHHHHHHH
Confidence 7899999999999652 1112 579999999999999987 541 1 113445556776
Q ss_pred hHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeee
Q 043137 74 IIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPV 153 (445)
Q Consensus 74 ~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~ 153 (445)
|+|.|+|+||.+++.+|+.|. ... +|..+.+++..+|++|||+||||+.||.+|+|||+||| |..++++|+
T Consensus 62 -l~p~liG~d~~~~~~i~~~l~-~~~----~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llG---g~~~~~vp~ 132 (410)
T 2gl5_A 62 -LAPLIVGEDPLNIEKIWEFFF-RKT----FWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLG---GKTNEKLRT 132 (410)
T ss_dssp -HGGGTTTSCTTCHHHHHHHHH-HSS----SGGGSCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---SCSCSSEEE
T ss_pred -HHHHhCCCChHHHHHHHHHHH-Hhc----ccccCCchHHHhHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccCceeE
Confidence 999999999999999999998 321 11112345567899999999999999999999999999 876666665
Q ss_pred eeEEe-ec-C-cccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhc------CCCC----cccCCCCCCC
Q 043137 154 PAFNV-IN-G-GSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKY------GQDA----TNVGDEGGFA 220 (445)
Q Consensus 154 ~~~~~-~~-g-g~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~------G~~~----~~~~~~g~~~ 220 (445)
|++ ++ | +.|+.+..++++ ..+++.+...++|+.+| .|. |... .+. ..|++.
T Consensus 133 --y~~~i~~g~~~~~~~~~~~~~---------~~~~a~~~~~~Gf~~vK----ik~~~~~~~G~~~~~~~~~~-~~GG~~ 196 (410)
T 2gl5_A 133 --YASQLQFGWGDKNHILVTPEE---------YAEAARAALDDGYDAIK----VDPLEIDRNGDDCVFQNRNR-NYSGLL 196 (410)
T ss_dssp --EEECGGGCCTTCCSCCCSHHH---------HHHHHHHHHHTTCSEEE----ECSSSBCTTSCBTTTSSCCG-GGGSCC
T ss_pred --eEecccCCccccccccCCHHH---------HHHHHHHHHHcCCCEEE----EeccccCCcccccccccccc-cccCcc
Confidence 554 44 3 334332222222 23455555555666655 232 2100 000 123332
Q ss_pred C--CccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCee
Q 043137 221 P--NIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIV 298 (445)
Q Consensus 221 ~--~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~ 298 (445)
+ +++.+.+.++.+|+++ | +++.|++|+| ++||.+++++++ +.+++|++.
T Consensus 197 ~~~~~~~~~e~v~avR~a~---G--~d~~l~vDan-----------------------~~~~~~~ai~~~-~~l~~~~i~ 247 (410)
T 2gl5_A 197 LADQLKMGEARIAAMREAM---G--DDADIIVEIH-----------------------SLLGTNSAIQFA-KAIEKYRIF 247 (410)
T ss_dssp CHHHHHHHHHHHHHHHHHH---C--SSSEEEEECT-----------------------TCSCHHHHHHHH-HHHGGGCEE
T ss_pred chhHHHHHHHHHHHHHHhc---C--CCCEEEEECC-----------------------CCCCHHHHHHHH-HHHHhcCCC
Confidence 2 2233345555555544 6 5899999993 578889999985 568999999
Q ss_pred eEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEE
Q 043137 299 SIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVM 378 (445)
Q Consensus 299 ~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~ 378 (445)
|||||++++|++++++|+++++ +||++||+. .++++++++++.+++|++++|++++||||++++++++|+++|++++
T Consensus 248 ~iE~P~~~~~~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~ 324 (410)
T 2gl5_A 248 LYEEPIHPLNSDNMQKVSRSTT--IPIATGERS-YTRWGYRELLEKQSIAVAQPDLCLCGGITEGKKICDYANIYDTTVQ 324 (410)
T ss_dssp EEECSSCSSCHHHHHHHHHHCS--SCEEECTTC-CTTHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEEC
T ss_pred eEECCCChhhHHHHHHHHhhCC--CCEEecCCc-CCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEe
Confidence 9999999999999999999998 999999985 5699999999999999999999999999999999999999999987
Q ss_pred ecCCCCCChhhH--HHHHHhhhc
Q 043137 379 ASHRSGETEDTF--IADLSVGLA 399 (445)
Q Consensus 379 ~~~~~~et~~~~--~~~la~a~~ 399 (445)
+++ + ++.++. .+||+.+++
T Consensus 325 ~h~-~-~s~i~~aa~~hlaaa~~ 345 (410)
T 2gl5_A 325 VHV-C-GGPVSTVAALHMETAIP 345 (410)
T ss_dssp CCC-C-SSHHHHHHHHHHHHHCT
T ss_pred ecC-C-CCHHHHHHHHHHHHhCC
Confidence 744 4 476664 456655543
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-48 Score=395.47 Aligned_cols=320 Identities=17% Similarity=0.207 Sum_probs=225.3
Q ss_pred Cc-eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhh
Q 043137 1 MA-ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPAL 79 (445)
Q Consensus 1 ~~-mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~L 79 (445)
|+ ||||+|++..+. .+++.++|+|+||+|++|||++.. + ...+...|++.++|.|
T Consensus 1 m~~mkIt~v~~~~~~--~~~~~~~V~v~td~G~~G~GE~~~--------------------~--~~~~~~~i~~~l~p~l 56 (410)
T 3dip_A 1 MSLPRITALRTIRLP--ERPKLIWVEVETEDGLTGLGETFR--------------------G--AQAVEAVLHEQTAPAI 56 (410)
T ss_dssp --CCBEEEEEEEEET--TEEEEEEEEEEETTSCEEEEEEES--------------------C--HHHHHHHHHHTHHHHH
T ss_pred CCCCeEEEEEEEEEC--CCCCEEEEEEEECCCCEEEEeCCC--------------------C--hHHHHHHHHHHHHHHh
Confidence 66 899999987762 235679999999999999988321 1 1344556777899999
Q ss_pred cCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEee
Q 043137 80 AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVI 159 (445)
Q Consensus 80 iG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~ 159 (445)
+|+||.+++++|+.|+ . . .++|+.++...+|+|||||||||+.||.+|+|||+||| |+.++++|++++...
T Consensus 57 iG~dp~~~e~~~~~~~-~--~---~~~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~yas~~~ 127 (410)
T 3dip_A 57 IGRAAENITSISSELL-N--P---YVGFGSSSAEVRAASAVDIALWDLAGQRAGVPLHVALG---GAARDRVPVYATCAG 127 (410)
T ss_dssp TTSBTTCHHHHHHHHT-C--C---SSSCSSCCHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSCSEEEEEEEECT
T ss_pred cCCCcchHHHHHHHHH-H--H---HHhhCCccHHHHHHHHHHHHHHHHhHhHcCCcHHHHhC---CCcCCceeEEEeccc
Confidence 9999999999999998 3 1 23355555667899999999999999999999999999 988888998654221
Q ss_pred cCcc-cCC------------CCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHh-hcCCCCcccCCCCCCCC--Cc
Q 043137 160 NGGS-HAG------------NKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKK-KYGQDATNVGDEGGFAP--NI 223 (445)
Q Consensus 160 ~gg~-~~~------------~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~-k~G~~~~~~~~~g~~~~--~~ 223 (445)
.+|. +.. ......+.++ ....+.+.+...++|+++| . +++....++| .... ++
T Consensus 128 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~G~~~~K----~~~~~~~~~K~G---~~~~~~~~ 196 (410)
T 3dip_A 128 YDFNTSLGGRRSIGSAELSTGPYDDQVAFM----RDAGVLAESLVAEGYAAMK----IWPFDDFASITP---HHISLTDL 196 (410)
T ss_dssp TTC--------------------------------CHHHHHHHHHHTTCSEEE----ECTTHHHHTTCT---TCCCHHHH
T ss_pred ccccccccccccccccccccccccchhhhh----hhHHHHHHHHHHcCCCEEE----ECCccCcccccc---CcCCHHHH
Confidence 1110 000 0000000000 0001112222233455443 2 0000000111 1111 12
Q ss_pred cChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECC
Q 043137 224 QENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDP 303 (445)
Q Consensus 224 ~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP 303 (445)
+.+.++++++|+++ | +++.|++|+ |++||.++++++ .+.++++++.|||||
T Consensus 197 ~~d~e~v~avR~a~---g--~d~~l~vDa-----------------------N~~~~~~~A~~~-~~~L~~~~i~~iEqP 247 (410)
T 3dip_A 197 KDGLEPFRKIRAAV---G--QRIEIMCEL-----------------------HSLWGTHAAARI-CNALADYGVLWVEDP 247 (410)
T ss_dssp HHHHHHHHHHHHHH---T--TSSEEEEEC-----------------------TTCBCHHHHHHH-HHHGGGGTCSEEECC
T ss_pred HHHHHHHHHHHHHc---C--CCceEEEEC-----------------------CCCCCHHHHHHH-HHHHHhcCCCEEECC
Confidence 23345555555554 5 589999999 367899999987 567899999999999
Q ss_pred -CCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC
Q 043137 304 -FDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 304 -~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~ 382 (445)
++++|++++++|+++++ +||++||+. +++++++++++.+++|++|||++++||||++++++++|+++|+++++++
T Consensus 248 ~~~~~~~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~- 323 (410)
T 3dip_A 248 IAKMDNIPAVADLRRQTR--APICGGENL-AGTRRFHEMLCADAIDFVMLDLTWCGGLSEGRKIAALAETHARPLAPHX- 323 (410)
T ss_dssp BSCTTCHHHHHHHHHHHC--CCEEECTTC-CSHHHHHHHHHTTCCSEEEECTTTSSCHHHHHHHHHHHHHTTCCEEECS-
T ss_pred CCCcccHHHHHHHHhhCC--CCEEecCCc-CCHHHHHHHHHcCCCCeEeecccccCCHHHHHHHHHHHHHcCCEEeeeC-
Confidence 89999999999999998 999999985 6799999999999999999999999999999999999999999986654
Q ss_pred CCCChh--hHHHHHHhhhc
Q 043137 383 SGETED--TFIADLSVGLA 399 (445)
Q Consensus 383 ~~et~~--~~~~~la~a~~ 399 (445)
+ +.+ ++.+||+.++.
T Consensus 324 ~--s~i~~aa~~hlaaa~p 340 (410)
T 3dip_A 324 T--GPVALMAGLHLALHAP 340 (410)
T ss_dssp S--CHHHHHHHHHHHHHCT
T ss_pred c--cHHHHHHHHHHHHhCC
Confidence 3 554 45666666654
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=397.02 Aligned_cols=324 Identities=11% Similarity=0.121 Sum_probs=230.5
Q ss_pred ceEEEEEEEEEEecC----CCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhh
Q 043137 2 AITITAVKARQIFDS----RGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGP 77 (445)
Q Consensus 2 ~mkI~~v~~~~v~~~----~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p 77 (445)
+||||+|+++.+..+ .++..++|+|+||+|++|||++.... ++ .......+++.++|
T Consensus 1 ~MkIt~i~~~~v~~plp~~~~~~~~~V~v~td~G~~G~GE~~~~~----------------~~---~~~~~~~i~~~l~p 61 (404)
T 4e5t_A 1 SMRLSDIETFVVGNPPPRHGGRYFIFVKLVTACGITGYGEIYNAT----------------FG---PDLVAKMAEDVFAR 61 (404)
T ss_dssp -CCEEEEEEEEEECCTTCTTCSEEEEEEEEETTSCEEEEEECCCS----------------SC---HHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEEeccCCcccCCCceEEEEEEECCCCEEEEeeccCC----------------Cc---hHHHHHHHHHHHHH
Confidence 499999999988643 23567999999999999999864311 11 23444567778899
Q ss_pred hhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEE
Q 043137 78 ALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFN 157 (445)
Q Consensus 78 ~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~ 157 (445)
.|+|+||.+++++|+.|++.. ++.+.+....+|+|||||||||+.||.+|+|||+||| |+.++++|++.+.
T Consensus 62 ~liG~dp~~~e~~~~~~~~~~------~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~y~~~ 132 (404)
T 4e5t_A 62 QFAGEDPHHIEKLWHKTYGAG------YTQRPDVTVMGVLSGLEMACWDIIGKAAGKPAYELLG---GKVHERLRSYTYL 132 (404)
T ss_dssp HTTTSCTTCHHHHHHHHHTTT------SCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTT---CCCCSSEEEEEEC
T ss_pred HhcCCChhHHHHHHHHHHHhh------hhcCCchHHHHHHHHHHHHHHHHhhhHcCCcHHHHcC---CCCcCeEEEEEEe
Confidence 999999999999999998321 1111223336799999999999999999999999999 9878888886532
Q ss_pred eecCcc-cCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCC---ccChHHHHHHH
Q 043137 158 VINGGS-HAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPN---IQENKEGLELL 233 (445)
Q Consensus 158 ~~~gg~-~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~---~~~~~~~l~~l 233 (445)
...++. +-....... +..+++.++++.+...++|+++| .|.|.... +..| ..+. ++.+.++++++
T Consensus 133 ~~~~~~~~p~~d~~~~----~~~~e~~~~~a~~~~~~G~~~~K----lK~g~~~~--~~~g-~~~~~~~~~~d~~~v~av 201 (404)
T 4e5t_A 133 YPTDGDVYPDPDKPNV----YNDADMAAEAAAKAVDQGFTAVK----FDPAGAYT--IYDG-HQPSLEDLERSEAFCKQI 201 (404)
T ss_dssp CC----------CCCT----TTCHHHHHHHHHHHHHHTCSEEE----ECCSCCCB--TTCS-BCCCHHHHHHHHHHHHHH
T ss_pred cccccccccccccccc----CCCHHHHHHHHHHHHHcCCCEEe----eCCCCCCc--cccc-ccccHHHHHHHHHHHHHH
Confidence 110000 000000000 01122334455555555666654 45442100 0011 1111 23344555555
Q ss_pred HHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHH
Q 043137 234 NTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYA 313 (445)
Q Consensus 234 ~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~ 313 (445)
|+++ | +++.|++|+ |++||.++++++ .+.++++++.|||||++++|+++++
T Consensus 202 R~a~---G--~d~~l~vDa-----------------------n~~~~~~~A~~~-~~~l~~~~i~~iEeP~~~~~~~~~~ 252 (404)
T 4e5t_A 202 RAAV---G--TKADLLFGT-----------------------HGQFTVSGAKRL-ARRLEAYDPLWFEEPIPPEKPEDMA 252 (404)
T ss_dssp HHHH---G--GGSEEEECC-----------------------CSCBCHHHHHHH-HHHHGGGCCSEEECCSCTTCHHHHH
T ss_pred HHHc---C--CCCeEEEeC-----------------------CCCcCHHHHHHH-HHHHhhcCCcEEECCCCcccHHHHH
Confidence 5554 5 589999999 367899999987 5678999999999999999999999
Q ss_pred HHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH--H
Q 043137 314 KLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF--I 391 (445)
Q Consensus 314 ~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~--~ 391 (445)
+|+++++ +||++||+. +++++++++++.+++|++|+|++++||||++++++++|+++|++++ .|+. ++.++. .
T Consensus 253 ~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~-~h~~-~s~i~~aa~ 327 (404)
T 4e5t_A 253 EVARYTS--IPVATGERL-CTKYEFSRVLETGAASILQMNLGRVGGLLEAKKIAAMAECHSAQIA-PHLY-CGPLVALAN 327 (404)
T ss_dssp HHHHHCS--SCEEECTTC-CHHHHHHHHHHHTCCSEECCCTTTSSCHHHHHHHHHHHHHTTCEEC-CCCS-SCHHHHHHH
T ss_pred HHHhhCC--CCEEeCCCc-CCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEe-ecCC-CcHHHHHHH
Confidence 9999998 999999985 6699999999999999999999999999999999999999999974 5643 566654 4
Q ss_pred HHHHhhh
Q 043137 392 ADLSVGL 398 (445)
Q Consensus 392 ~~la~a~ 398 (445)
+||+.++
T Consensus 328 ~hlaaa~ 334 (404)
T 4e5t_A 328 IQLATCS 334 (404)
T ss_dssp HHHHHTC
T ss_pred HHHHHhC
Confidence 4555443
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-48 Score=396.09 Aligned_cols=318 Identities=13% Similarity=0.100 Sum_probs=231.1
Q ss_pred eEEEEEEEEEEecC----CCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhh
Q 043137 3 ITITAVKARQIFDS----RGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPA 78 (445)
Q Consensus 3 mkI~~v~~~~v~~~----~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~ 78 (445)
||||+|+++.+..+ .++..++|+|+||+|++|||++.... +. ...+...+++.++|.
T Consensus 1 MkIt~i~~~~v~~plp~~~~~~~~~V~v~td~G~~G~GE~~~~~----------------~~---~~~~~~~i~~~l~p~ 61 (412)
T 4e4u_A 1 MKIVSLETHIVAVPPPHVGGMYWIFVKLKTDDGIEGVGEIYSAT----------------FG---PKAMAPIIDDVFERH 61 (412)
T ss_dssp CCEEEEEEEEEECCTTCTTCSEEEEEEEEETTSCEEEEEECCCS----------------SC---HHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEEccCCCccCCCceEEEEEEECCCCEEEEeecCCC----------------CC---HHHHHHHHHHHhHHH
Confidence 89999999988643 23567999999999999999864311 11 234455677788999
Q ss_pred hcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEe
Q 043137 79 LAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNV 158 (445)
Q Consensus 79 LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~ 158 (445)
|+|+||.+++++|+.|++.. ++.+.+....+|+|||||||||+.||.+|+|||+||| |+.++++|++.+.
T Consensus 62 LiG~dp~~~e~~~~~l~~~~------~~~~~~~~~~~A~said~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~yas~- 131 (412)
T 4e4u_A 62 LLNRDPHHVERLFRQAYSSG------FTQRPDLTMMGVVSGLEMACWDIIGKAAAKPVYELLG---GRIHERLRSYTYL- 131 (412)
T ss_dssp TTTSCTTCHHHHHHHHHHTT------TCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTT---CCCCSSEEEEEEC-
T ss_pred hCCCChhHHHHHHHHHHHhh------hhcCCcchHHHHHHHHHHHHHHHhHhHcCCcHHHHcC---CCcCCeeEEEEec-
Confidence 99999999999999998321 1111222336799999999999999999999999999 9878888885532
Q ss_pred ecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCC---ccChHHHHHHHHH
Q 043137 159 INGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPN---IQENKEGLELLNT 235 (445)
Q Consensus 159 ~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~---~~~~~~~l~~l~~ 235 (445)
..+. ...... +..+++..+++.+...++|+++| .|.|.... +..| ..+. ++.+.++++++|+
T Consensus 132 -~~~~-~~~~~~------~~~~e~~~~~a~~~~~~G~~~iK----lK~g~~~~--~~~g-~~~~~~~~~~d~~~v~avR~ 196 (412)
T 4e4u_A 132 -YPKN-AKGEYD------YDDPDLAAECAAENVKLGFTAVK----FDPAGPYT--AYSG-HQLSLEVLDRCELFCRRVRE 196 (412)
T ss_dssp -CCBC-TTSCBC------SSCHHHHHHHHHHHHHHTCSEEE----ECCSCCCB--TTCC-BCCCHHHHHHHHHHHHHHHH
T ss_pred -cCCc-cccccc------CCCHHHHHHHHHHHHHcCCCEEE----ECCCCCCc--cccc-cccchhhHHHHHHHHHHHHH
Confidence 1110 000000 01122334555555555676654 45442110 0011 1121 2233445555555
Q ss_pred HHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHH
Q 043137 236 AIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKL 315 (445)
Q Consensus 236 av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L 315 (445)
++ | +++.|++|+ |++||.++++++ .+.++++++.|||||++++|++++++|
T Consensus 197 a~---G--~d~~l~vDa-----------------------N~~~~~~~A~~~-~~~L~~~~i~~iEeP~~~~d~~~~~~l 247 (412)
T 4e4u_A 197 AV---G--SKADLLFGT-----------------------HGQMVPSSAIRL-AKRLEKYDPLWFEEPVPPGQEEAIAQV 247 (412)
T ss_dssp HH---T--TSSEEEECC-----------------------CSCBCHHHHHHH-HHHHGGGCCSEEECCSCSSCHHHHHHH
T ss_pred Hh---C--CCCeEEEEC-----------------------CCCCCHHHHHHH-HHHhhhcCCcEEECCCChhhHHHHHHH
Confidence 44 5 589999999 367899999987 567899999999999999999999999
Q ss_pred HHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH--HHH
Q 043137 316 TSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF--IAD 393 (445)
Q Consensus 316 ~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~--~~~ 393 (445)
+++++ +||++||+. +++++++++++.+++|++|+|++++||||++++++++|+++|++++ .|+ .++.++. .+|
T Consensus 248 ~~~~~--iPIa~dE~~-~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~kia~~A~~~gi~v~-~h~-~~s~i~~aa~~h 322 (412)
T 4e4u_A 248 AKHTS--IPIATGERL-TTKYEFHKLLQAGGASILQLNVARVGGLLEAKKIATLAEVHYAQIA-PHL-YNGPVGAAASIQ 322 (412)
T ss_dssp HHTCS--SCEEECTTC-CHHHHHHHHHHTTCCSEECCCTTTTTSHHHHHHHHHHHHHTTCEEC-CCC-CSCHHHHHHHHH
T ss_pred HhhCC--CCEEecCcc-CCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEE-ecC-CCcHHHHHHHHH
Confidence 99998 999999985 6699999999999999999999999999999999999999999975 463 3576654 445
Q ss_pred HHhhh
Q 043137 394 LSVGL 398 (445)
Q Consensus 394 la~a~ 398 (445)
|+.++
T Consensus 323 laaa~ 327 (412)
T 4e4u_A 323 LATCT 327 (412)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 55443
|
| >4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-48 Score=391.29 Aligned_cols=301 Identities=18% Similarity=0.179 Sum_probs=225.5
Q ss_pred ceEEEEEEEEEEecC--------CC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHH
Q 043137 2 AITITAVKARQIFDS--------RG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVS 69 (445)
Q Consensus 2 ~mkI~~v~~~~v~~~--------~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~ 69 (445)
.||||+|+++.+..+ .+ +..++|+|+||+|++|||++... +++...+..
T Consensus 19 ~MkIt~Ie~~~~~~Pl~~p~~~s~g~~~~~~~vlV~i~td~G~~G~Ge~~~~-------------------~~~~~~~~~ 79 (388)
T 4h83_A 19 GLTITRIETIPMVAPLAREFRGSHYHMTHRATIVTRVHTDAGIIGEAYTGDE-------------------HETMFDIDR 79 (388)
T ss_dssp -CBEEEEEEEEEEEEC----------CCEEEEEEEEEEETTSCEEEEEECCC-------------------CTTHHHHHH
T ss_pred CCEEEEEEEEEEEeeccCCEECCCEEEEEEEEEEEEEEECCCCEEEEEecCC-------------------cccHHHHHH
Confidence 499999999888432 22 35689999999999999975421 223456666
Q ss_pred HHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcc
Q 043137 70 NVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNL 149 (445)
Q Consensus 70 ~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~ 149 (445)
.+++.|+|.|+|+||.+++++|+.|. .... +.++.+....+|+|||||||||+.||.+|+|||+||| |. ++
T Consensus 80 ~i~~~lap~LiG~dp~~ie~l~~~~~-~~~~----~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLG---g~-~~ 150 (388)
T 4h83_A 80 IIHEELAPTLIGQDAMAIERLWDSGY-KVTF----DILRDRRLGLVALAAVNTAIWDAVGKALKMPLWKLWG---GY-RN 150 (388)
T ss_dssp HHHHTTHHHHTTSBTTCHHHHHHHHG-GGGC----CTTSCHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTT---CS-CS
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHH-hhhh----hhccCCchhHHHHHHHHHHHHHHHHHHcCCChhhhcC---CC-cC
Confidence 78899999999999999999999998 3321 1122234456899999999999999999999999999 85 56
Q ss_pred eeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHH
Q 043137 150 VLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEG 229 (445)
Q Consensus 150 ~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~ 229 (445)
++|++.++...+ +.. +...+++.+...++|+++| .|.| + .+.+.+.++
T Consensus 151 ~~~~y~~~~~~~--------~~~--------~~~~~~~~~~~~~G~~~~K----ikvg----------~--~~~~~d~~~ 198 (388)
T 4h83_A 151 ELPMIAIGGYYG--------EPL--------GSIADEMHNYQELGLAGVK----FKVG----------G--LSAAEDAAR 198 (388)
T ss_dssp EEEEEEEECCTT--------CTT--------CSHHHHHHHHHHHTBSEEE----EECS----------S--SCHHHHHHH
T ss_pred ceEEEeeccccC--------CCH--------HHHHHHHHHHHHcCCceEe----ecCC----------C--CCHHHHHHH
Confidence 778765432111 011 1123344444444555443 3432 1 122334556
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCc-CC
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQ-DD 308 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~-~D 308 (445)
++.+|+++ | +++.|++|+ |+.||.++++++ .+.++++++.|||||+++ +|
T Consensus 199 v~avR~~~---G--~~~~l~vDa-----------------------N~~~~~~~A~~~-~~~l~~~~~~~iEeP~~~~~d 249 (388)
T 4h83_A 199 ITAAREAA---G--DDFIICIDA-----------------------NQGYKPAVAVDL-SRRIADLNIRWFEEPVEWHND 249 (388)
T ss_dssp HHHHHHHH---C--SSSEEEEEC-----------------------TTCBCHHHHHHH-HHHTTTSCCCCEESCBCSTTH
T ss_pred HHHHHHhc---C--CCeEEEEec-----------------------CcCCCHHHHHHH-HHHhhhcCcceeecCcccccc
Confidence 66665555 6 589999999 367899999988 456899999999999986 57
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~ 388 (445)
++++++|+++++ +||++||+. .++++++++++.+++|++|||++++||||++++++++|+++|+.+ .+|. ++
T Consensus 250 ~~~~~~l~~~~~--ipIa~dE~~-~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~kia~~A~~~gv~v-~~h~--~~-- 321 (388)
T 4h83_A 250 KRSMRDVRYQGS--VPVCAGQTE-FSASGCRDLMETGAIDVCNFDSSWSGGPTAWLRTAAIATSYDVQM-GHHE--EP-- 321 (388)
T ss_dssp HHHHHHHHHHSS--SCEEECTTC-SSHHHHHHHHHHTCCSEECCCGGGTTCHHHHHHHHHHHHHTTCEE-CCCS--CH--
T ss_pred hHHHHHHHhhcC--CCccCCccc-cChHhHHHHHHcCCCCeEeecceeCCCHHHHHHHHHHHHHCCCEE-EecC--HH--
Confidence 999999999998 999999985 669999999999999999999999999999999999999999985 5552 33
Q ss_pred hHHHHHHhhhc
Q 043137 389 TFIADLSVGLA 399 (445)
Q Consensus 389 ~~~~~la~a~~ 399 (445)
+..+|+++++.
T Consensus 322 ~~~~h~~aa~~ 332 (388)
T 4h83_A 322 QVSTHLLASQP 332 (388)
T ss_dssp HHHHHHHHHST
T ss_pred HHHHHHHHHhh
Confidence 44578877764
|
| >2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-48 Score=391.70 Aligned_cols=304 Identities=17% Similarity=0.192 Sum_probs=225.6
Q ss_pred eEEEEEEEEEEe--------cCCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIF--------DSRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~--------~~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+. .+.+ +..++|+|+|| |++|||++.... .+.|.+++.+++...
T Consensus 1 MKI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~v~V~i~td-G~~G~GE~~~~~-------------~p~~~~e~~~~~~~~ 66 (370)
T 2chr_A 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVYSE-GLVGVGEGGSVG-------------GPVWSAECAETIKII 66 (370)
T ss_dssp CCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEBT-TBCCEEECCCST-------------TTTTSSCCHHHHHHH
T ss_pred CEEEEEEEEEEEcccCCceEccceEEEEEEEEEEEEEEC-CcEEEEEecCCC-------------CCccCcccHHHHHHH
Confidence 899999998774 2333 35699999986 999999653211 133667778888888
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
+++.++|.|+|+||.+++.+|+.|.+.+. + ..+|++|||+||||+.||.+|+|||+||| |..++.
T Consensus 67 i~~~l~p~liG~d~~~~~~~~~~~~~~~~----------~--~~~A~said~AlwDl~gK~~g~Pl~~lLG---g~~~~~ 131 (370)
T 2chr_A 67 VERYLAPHLLGTDAFNVSGALQTMARAVT----------G--NASAKAAVEMALLDLKARALGVSIAELLG---GPLRSA 131 (370)
T ss_dssp HHHHTHHHHTTSCTTCHHHHHHHHHTTCS----------S--CHHHHHHHHHHHHHHHHHHTTCCHHHHTT---CCSCSE
T ss_pred HHHHHHHHhcCCCcccHHHHHHHHhhccc----------c--cHHHHHHHHHHHHHHHHHhcCCccccccC---Cccccc
Confidence 99999999999999999999999983221 1 14699999999999999999999999999 988777
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGV-EVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEG 229 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~-~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~ 229 (445)
+|++. .+..+. . .+...+..+... .+|+. .+.++|. .+.+.+.++
T Consensus 132 ~~~~~--~~~~~~-------~---------~~~~~~~~~~~~~~g~~~-----------~K~Kvg~-----~~~~~d~~~ 177 (370)
T 2chr_A 132 IPIAW--TLASGD-------T---------KRDLDSAVEMIERRRHNR-----------FKVKLGF-----RSPQDDLIH 177 (370)
T ss_dssp EEBEE--EECSSC-------H---------HHHHHHHHHHHHTTSCCE-----------EEEECSS-----SCHHHHHHH
T ss_pred cceee--eeccCc-------h---------hhhHHHHHHHHhhcccce-----------eeccccc-----CChHHHHHH
Confidence 77633 222221 0 011112211110 11211 1222221 111223334
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCH
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDW 309 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~ 309 (445)
++.+|++ +| +++.|++|+ |+.||.++++++ .+.++++++.|||||++++|+
T Consensus 178 v~avr~~---~g--~~~~l~vDa-----------------------N~~~~~~~A~~~-~~~l~~~~~~~iEeP~~~~d~ 228 (370)
T 2chr_A 178 MEALSNS---LG--SKAYLRVDV-----------------------NQAWDEQVASVY-IPELEALGVELIEQPVGRENT 228 (370)
T ss_dssp HHHHHHH---TT--TTSEEEEEC-----------------------TTCCCTHHHHHH-HHHHHTTTCCEEECCSCSSCH
T ss_pred HHHHHHh---cC--CCcEEEecC-----------------------CCCCCHHHHHHH-HHHHHhcCCceecCCCChhhh
Confidence 4444333 45 689999999 367889999987 556899999999999999999
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+++++|+++++ +||++||+. .++++++++++.+++|++|||++++||||++++++++|+++|++++++| +.++..+
T Consensus 229 ~~~~~l~~~~~--ipIa~dE~~-~~~~~~~~~~~~~a~d~i~~d~~~~GGit~~~~ia~~A~~~gi~~~~~~-~~~~~i~ 304 (370)
T 2chr_A 229 QALRRLSDNNR--VAIMADESL-STLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGT-MLDSTIG 304 (370)
T ss_dssp HHHHHHHHHCS--SEEEESSSC-CSHHHHHHHHTTTCCSEECCCHHHHTSHHHHHHHHHHHHHHTCEECCCC-CSCCHHH
T ss_pred hhhhHHhhhcc--CCccCCccC-CCHHHHHHHHHcCCCcEEEeCCcccCCHHHHHHHHHHHHHcCCeEEeCC-CcccHHH
Confidence 99999999998 999999985 5699999999999999999999999999999999999999999987766 5678776
Q ss_pred HHHHHHhhhcCCc
Q 043137 390 FIADLSVGLATGQ 402 (445)
Q Consensus 390 ~~~~la~a~~~~~ 402 (445)
.++.++++...+.
T Consensus 305 ~aa~~hlaa~~p~ 317 (370)
T 2chr_A 305 TSVALQLYSTVPS 317 (370)
T ss_dssp HHHHHHHHTTSSC
T ss_pred HHHHHHHHHhCCC
Confidence 5555555444443
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-48 Score=395.43 Aligned_cols=319 Identities=16% Similarity=0.203 Sum_probs=231.6
Q ss_pred ceEEEEEEEEEEecCCCCc-----eEEEEEEeCCCceEEEec-cCCCccccccceeeccCCCCCCCccHHHHHHHHHHhH
Q 043137 2 AITITAVKARQIFDSRGNP-----TVEVDVTTSDGHVARAAV-PSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAII 75 (445)
Q Consensus 2 ~mkI~~v~~~~v~~~~g~~-----~v~V~v~td~G~~G~g~~-~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l 75 (445)
.|||++|+++.+..+..+| +++|+|+||+|++|||++ +.. | .+...+...+++ +
T Consensus 3 ~MkI~~i~~~~~~~p~~~p~~~~~~v~V~v~td~G~~G~Ge~a~~~---g----------------~~~~~~~~~i~~-l 62 (407)
T 2o56_A 3 LMKITSVDIIDVANDFASATSKWRPVVVKINTDEGISGFGEVGLAY---G----------------VGASAGIGMAKD-L 62 (407)
T ss_dssp CCCEEEEEEEECCCCC-----CCCCEEEEEEETTSCEEEEEESCSS---S----------------SCHHHHHHHHHH-H
T ss_pred CCEEEEEEEEEeccccCCCcccceeEEEEEEeCCCCEEEEeeccCC---C----------------CchHHHHHHHHH-H
Confidence 4999999999997765555 679999999999999976 531 1 113445566776 9
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeee
Q 043137 76 GPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPA 155 (445)
Q Consensus 76 ~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~ 155 (445)
+|.|+|+||.+++.+|+.|. ... +|..+.+++..+|++|||+||||+.||.+|+|||+||| |..++++|+
T Consensus 63 ~p~liG~d~~~~~~i~~~l~-~~~----~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llG---g~~~~~vp~-- 132 (407)
T 2o56_A 63 SAIIIGMDPMNNEAIWEKML-KKT----FWGQGGGGIFSAAMSGIDIALWDIKGKAWGVPLYKMLG---GKSREKIRT-- 132 (407)
T ss_dssp HHHHTTSCTTCHHHHHHHHH-HSS----SGGGGCBHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCSCSSEEE--
T ss_pred HHHhCCCChHHHHHHHHHHH-Hhc----cccCCCchHHHhHHHHHHHHHHHHhhhhcCCcHHHHcC---CCCCCeeee--
Confidence 99999999999999999998 322 11112344567899999999999999999999999999 976666666
Q ss_pred EEe-ec-C-cccC--CCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhc------CCCCcccCCCCCCCC--C
Q 043137 156 FNV-IN-G-GSHA--GNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKY------GQDATNVGDEGGFAP--N 222 (445)
Q Consensus 156 ~~~-~~-g-g~~~--~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~------G~~~~~~~~~g~~~~--~ 222 (445)
|++ ++ | +.|+ ++..+.+ +..+++.+...++|+.+| .|. |.. ..++.+++.+ +
T Consensus 133 y~~~i~~g~~~~~~~~~~~~~~---------~~~~~a~~~~~~Gf~~vK----ik~~~~~~~G~~--~~s~~~~~~~~~~ 197 (407)
T 2o56_A 133 YASQLQFGWGDGSDKDMLTEPE---------QYAQAALTAVSEGYDAIK----VDTVAMDRHGNW--NQQNLNGPLTDKI 197 (407)
T ss_dssp EEECGGGCCSTTCTTCCCCSHH---------HHHHHHHHHHHTTCSEEE----ECCSSBCTTSCB--SCSCCCSSCCHHH
T ss_pred eeeeccCCccccccccccCCHH---------HHHHHHHHHHHcCCCEEE----EcccccCCcCcc--ccCcccCCCchhH
Confidence 544 43 2 2221 0111122 224455555555666654 232 211 0111222221 1
Q ss_pred ccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEEC
Q 043137 223 IQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIED 302 (445)
Q Consensus 223 ~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEd 302 (445)
++.+.++++++|++ +| +++.|++|+| ++||.+++++++ +.+++|++.||||
T Consensus 198 ~~~~~e~v~avR~a---~G--~d~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~i~~iE~ 248 (407)
T 2o56_A 198 LRLGYDRMAAIRDA---VG--PDVDIIAEMH-----------------------AFTDTTSAIQFG-RMIEELGIFYYEE 248 (407)
T ss_dssp HHHHHHHHHHHHHH---HC--TTSEEEEECT-----------------------TCSCHHHHHHHH-HHHGGGCCSCEEC
T ss_pred HHHHHHHHHHHHHh---cC--CCCEEEEECC-----------------------CCCCHHHHHHHH-HHHHhcCCCEEeC
Confidence 12234445444444 46 5899999993 578889999985 5689999999999
Q ss_pred CCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC
Q 043137 303 PFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 303 P~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~ 382 (445)
|++++|++++++|+++++ +||++||+. .++++++++++.+++|++++|++++||||++++++++|+++|+++++++
T Consensus 249 P~~~~~~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~i~~~A~~~g~~~~~h~- 324 (407)
T 2o56_A 249 PVMPLNPAQMKQVADKVN--IPLAAGERI-YWRWGYRPFLENGSLSVIQPDICTCGGITEVKKICDMAHVYDKTVQIHV- 324 (407)
T ss_dssp SSCSSSHHHHHHHHHHCC--SCEEECTTC-CHHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEECCCC-
T ss_pred CCChhhHHHHHHHHHhCC--CCEEeCCCc-CCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeecC-
Confidence 999999999999999998 999999985 5699999999999999999999999999999999999999999987744
Q ss_pred CCCChhhH--HHHHHhhhc
Q 043137 383 SGETEDTF--IADLSVGLA 399 (445)
Q Consensus 383 ~~et~~~~--~~~la~a~~ 399 (445)
+. +.++. .+||+.+++
T Consensus 325 ~~-s~i~~aa~~hlaaa~~ 342 (407)
T 2o56_A 325 CG-GPISTAVALHMETAIP 342 (407)
T ss_dssp CS-CHHHHHHHHHHHHHCT
T ss_pred CC-CHHHHHHHHHHHHhCC
Confidence 44 76654 456665543
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-48 Score=394.50 Aligned_cols=317 Identities=16% Similarity=0.181 Sum_probs=231.2
Q ss_pred CceEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhh-hh
Q 043137 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGP-AL 79 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p-~L 79 (445)
|.|||++|+++.+. +.+.++++|+|+||+|++|||++++. | |++..++...++ .++| .|
T Consensus 1 m~mkI~~i~~~~v~-~~~~~~v~V~v~td~G~~G~GE~~~~-----------------~-g~~~~~~~~~i~-~l~~~~l 60 (392)
T 2poz_A 1 MSLKITGVNIYLLK-SGRLHPVLVEISTDEGITGAGEAGIA-----------------Y-GVGGTAAAGMIK-DLSERFL 60 (392)
T ss_dssp --CCEEEEEEEECC-BTTBCCEEEEEEETTSCCEEEEESCS-----------------S-SSCHHHHHHHHH-HHHHHHT
T ss_pred CCCeEEEEEEEEEe-cCCccEEEEEEEECCCCEEEEeecCC-----------------c-CCchHHHHHHHH-HhhHhhh
Confidence 78999999999997 55555799999999999999977531 1 334556666776 5999 99
Q ss_pred cCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEee
Q 043137 80 AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVI 159 (445)
Q Consensus 80 iG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~ 159 (445)
+|+||.+++.+|+.|.+...++.+ .+.++.+|++|||+||||+.||.+|+|||+||| |..++++|+ |++
T Consensus 61 ~G~d~~~~~~i~~~l~~~~~~~~~-----~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~lLG---g~~~~~v~~--y~~- 129 (392)
T 2poz_A 61 IGKDPSRIEELWSTMYDHSFWAKN-----GGAIIFAGISAIEQALWDIKGKCLGVPVYELFG---GKIRDRVRA--YAN- 129 (392)
T ss_dssp TTCCTTCHHHHHHHHHHHSSTTTT-----CCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSCSEEEE--EEC-
T ss_pred cCCChhHHHHHHHHHHHhcccccC-----CchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccCceEE--EEe-
Confidence 999999999999999843222111 234557899999999999999999999999999 976665555 543
Q ss_pred cCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCC------CCccChHHHHHHH
Q 043137 160 NGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFA------PNIQENKEGLELL 233 (445)
Q Consensus 160 ~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~------~~~~~~~~~l~~l 233 (445)
|+ ..+..+.+ +..+++.+...++|+.+| .|.|..... +..+++. .+.+.+.+.++++
T Consensus 130 --g~-~~~~~~~~---------~~~~~a~~~~~~Gf~~vK----ik~g~~~~g-~~~~~~~~gg~~~~~~~~~~e~v~av 192 (392)
T 2poz_A 130 --GW-YGAADTPD---------EFARAVERPLKEGYGALK----FYPLAQRVG-SALQHVTRRSMSAEAIELAYRRVKAV 192 (392)
T ss_dssp --SC-CTTCCSHH---------HHHHHTHHHHHTTCSEEE----ECCCCEEET-TEEECCBTTBCCHHHHHHHHHHHHHH
T ss_pred --cc-ccCCCCHH---------HHHHHHHHHHHcCCCEEE----Eeccccccc-ccccccccCCcchhhHHHHHHHHHHH
Confidence 21 10011122 223445554445565554 343311000 0000111 1222334455555
Q ss_pred HHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHH
Q 043137 234 NTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYA 313 (445)
Q Consensus 234 ~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~ 313 (445)
|+++ | +++.|++|+| ++||.+++++++ +.++++++.|||||++++|+++++
T Consensus 193 r~a~---G--~d~~l~vD~n-----------------------~~~~~~~a~~~~-~~l~~~~i~~iE~P~~~~~~~~~~ 243 (392)
T 2poz_A 193 RDAA---G--PEIELMVDLS-----------------------GGLTTDETIRFC-RKIGELDICFVEEPCDPFDNGALK 243 (392)
T ss_dssp HHHH---C--TTSEEEEECT-----------------------TCSCHHHHHHHH-HHHGGGCEEEEECCSCTTCHHHHH
T ss_pred HHhc---C--CCCEEEEECC-----------------------CCCCHHHHHHHH-HHHHhcCCCEEECCCCcccHHHHH
Confidence 5544 6 5899999993 578899999985 568999999999999999999999
Q ss_pred HHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh--HH
Q 043137 314 KLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT--FI 391 (445)
Q Consensus 314 ~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~--~~ 391 (445)
+|+++++ +||++||+. .++++++++++.+++|+++||++++||||++++++++|+++|+++++++ +. +.++ +.
T Consensus 244 ~l~~~~~--ipIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~h~-~~-s~i~~aa~ 318 (392)
T 2poz_A 244 VISEQIP--LPIAVGERV-YTRFGFRKIFELQACGIIQPDIGTAGGLMETKKICAMAEAYNMRVAPHV-CG-SSLIETAT 318 (392)
T ss_dssp HHHHHCS--SCEEECTTC-CHHHHHHHHHTTTCCSEECCCTTTSSCHHHHHHHHHHHHTTTCEECCCC-CS-SHHHHHHH
T ss_pred HHHhhCC--CCEEecCCc-CCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEecCC-CC-CHHHHHHH
Confidence 9999998 999999986 5599999999999999999999999999999999999999999987744 55 7665 45
Q ss_pred HHHHhhhc
Q 043137 392 ADLSVGLA 399 (445)
Q Consensus 392 ~~la~a~~ 399 (445)
+||+.++.
T Consensus 319 ~hlaaa~~ 326 (392)
T 2poz_A 319 LQLEANIT 326 (392)
T ss_dssp HHHHHHCT
T ss_pred HHHHHhCC
Confidence 56666543
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-48 Score=390.76 Aligned_cols=310 Identities=18% Similarity=0.164 Sum_probs=223.2
Q ss_pred ceEEEEEEEEEEecC---CCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHH------
Q 043137 2 AITITAVKARQIFDS---RGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVN------ 72 (445)
Q Consensus 2 ~mkI~~v~~~~v~~~---~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~------ 72 (445)
.||||+|+++.+..+ ..+..++|+|+||+|++|||++... .......++
T Consensus 4 ~mkI~~i~~~~v~~p~~~~~~~~~~V~v~td~G~~G~GE~~~~----------------------~~~~~~~~~~~~~~~ 61 (394)
T 3mqt_A 4 GANIVSVEFIPVNVAATNWSENTVIVKVTDENGVYGLGEADGP----------------------PECMKAFSEIENEHK 61 (394)
T ss_dssp -CCEEEEEEEEEECC-----CEEEEEEEEETTSCEEEEEECSC----------------------HHHHHHHHTCCCCBT
T ss_pred CCeEeEEEEEEEecCCCCCCccEEEEEEEECCCCEEEEEECCc----------------------HHHHHHHHhcccchh
Confidence 489999999988643 2356799999999999999976431 111111222
Q ss_pred --HhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 73 --AIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 73 --~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
+.++|.|+|+||.+++++|+.|++... | .|+++...+|+|||||||||+.||.+|+|||+||| |..+++
T Consensus 62 ~~~~l~p~liG~dp~~~e~~~~~l~~~~~-----~-~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLG---G~~r~~ 132 (394)
T 3mqt_A 62 WLNNIKEAVIGRDPLEFRANYNRMYDTTK-----W-IGMRGLGLFAISGIDMALYDLAGKQLGVPAYKLMG---GAQKAQ 132 (394)
T ss_dssp TBCCGGGGTTTSCTTCHHHHHHHHHHHTT-----T-TCSSBHHHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCCSSS
T ss_pred hHHHHHHHhCCCChhHHHHHHHHHHHhhh-----h-hCCccHHHHHHHHHHHHHHHHHHhHcCCcHHHHcC---CCCCCe
Confidence 248999999999999999999984321 1 12334446899999999999999999999999999 987788
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHh-hcCCCCcccCCCCCCCCCccChHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKK-KYGQDATNVGDEGGFAPNIQENKEG 229 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~-k~G~~~~~~~~~g~~~~~~~~~~~~ 229 (445)
+|++. +++..... ..+.++. + ++..+++.+...++|+++| . |+|. . ..+.+.+.++
T Consensus 133 v~~y~--s~~~~~~~--~~~~~~~-i----~~~~~~a~~~~~~G~~~~K----~~k~g~-------~---~~~~~~d~~~ 189 (394)
T 3mqt_A 133 LTPYF--TLYPSVAA--DATLSEI-V----EAYKPLIAKAKERGAKAVK----VCIIPN-------D---KVSDKEIVAY 189 (394)
T ss_dssp BCCEE--ECCCCCCT--TCCHHHH-H----HHHHHHHHHHHHTTCSEEE----EECCCC-------T---TSCHHHHHHH
T ss_pred EEEEE--EecCCCCC--Ccchhhh-H----HHHHHHHHHHHHcCCCEEE----ecccCC-------C---ccCHHHHHHH
Confidence 88744 32110100 0000000 0 0111223333333444433 3 3331 0 0122344555
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCcc-CHHHHHHHHHHhhccCCeeeEECCCCcCC
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKI-SGDALKDLYKSFISDYPIVSIEDPFDQDD 308 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~-t~~~ai~~~~~~l~~~~i~~iEdP~~~~D 308 (445)
++++|+++ | +++.|++|+ |++| |.++++++ .+.++++++.|||||++++|
T Consensus 190 v~avR~a~---G--~d~~l~vDa-----------------------n~~~~~~~~A~~~-~~~L~~~~i~~iEeP~~~~~ 240 (394)
T 3mqt_A 190 LRELREVI---G--WDMDMMVDC-----------------------LYRWTDWQKARWT-FRQLEDIDLYFIEACLQHDD 240 (394)
T ss_dssp HHHHHHHH---C--SSSEEEEEC-----------------------TTCCSCHHHHHHH-HHHTGGGCCSEEESCSCTTC
T ss_pred HHHHHHHh---C--CCCeEEEEC-----------------------CCCCCCHHHHHHH-HHHHhhcCCeEEECCCCccc
Confidence 65555554 6 589999999 3678 89999987 56789999999999999999
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~ 388 (445)
++++++|+++++ +||++||+. +++++++++++.+++|++|+|++++||||++++++++|+++|++++ .|++ ++.+
T Consensus 241 ~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~-~h~~-~s~i 315 (394)
T 3mqt_A 241 LIGHQKLAAAIN--TRLCGAEMS-TTRFEAQEWLEKTGISVVQSDYNRCGGVTELLRIMDICEHHNAQLM-PHNW-KTGI 315 (394)
T ss_dssp HHHHHHHHHHSS--SEEEECTTC-CHHHHHHHHHHHHCCSEECCCTTTSSCHHHHHHHHHHHHHHTCEEC-CCCC-SCHH
T ss_pred HHHHHHHHhhCC--CCEEeCCCc-CCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCEEe-ccCC-CchH
Confidence 999999999998 999999985 6699999999999999999999999999999999999999999986 4544 8876
Q ss_pred hH--HHHHHhhhc
Q 043137 389 TF--IADLSVGLA 399 (445)
Q Consensus 389 ~~--~~~la~a~~ 399 (445)
+. .+||+++++
T Consensus 316 ~~aa~~hlaaa~p 328 (394)
T 3mqt_A 316 TAAAARHFGIVCH 328 (394)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCC
Confidence 54 556665554
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-48 Score=394.69 Aligned_cols=312 Identities=15% Similarity=0.219 Sum_probs=228.4
Q ss_pred ceEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcC
Q 043137 2 AITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAG 81 (445)
Q Consensus 2 ~mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG 81 (445)
.||||+|++..+ ..+++.++|+|+||+|++|||++... ++ ...+...|++.++|.|+|
T Consensus 22 ~mkIt~v~~~~~--~~~~~~v~V~v~td~Gi~G~GE~~~~-------------------g~-~~~~~~~l~~~l~p~LiG 79 (426)
T 4e4f_A 22 SMKIVSAEVFVT--CPGRNFVTLKITTDSGLTGLGDATLN-------------------GR-ELPVASYLNDHVCPQLIG 79 (426)
T ss_dssp CCBEEEEEEEEE--CSSSCEEEEEEEETTSCEEEEECCCT-------------------TC-HHHHHHHHHHTHHHHHTT
T ss_pred CcEEEEEEEEEE--cCCCCEEEEEEEECCCCEEEEecccC-------------------CC-cHHHHHHHHHHHHHHHcC
Confidence 399999998765 33567899999999999999976431 11 123455678889999999
Q ss_pred CCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecC
Q 043137 82 KDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVING 161 (445)
Q Consensus 82 ~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~g 161 (445)
+||.+++++|+.|++.. + |+++.+..+|+|||||||||+.||.+|+|||+||| |+.++++|+|.++ .+
T Consensus 80 ~dp~~ie~i~~~l~~~~-----~--~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~y~~~--~~ 147 (426)
T 4e4f_A 80 RDAHQIEDIWQYFYKGA-----Y--WRRGPVTMSAISAVDMALWDIKAKAANMPLYQLLG---GASRTGVMVYCHT--TG 147 (426)
T ss_dssp SBTTCHHHHHHHHHHHT-----S--SCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHT---CCSSSSEEEEEEE--CC
T ss_pred CChhhHHHHHHHHHhhc-----c--ccCCccchhhHHHHHHHHHHHhHhHcCCcHHHHcC---CCCCCceeEeEeC--CC
Confidence 99999999999998421 1 23344556899999999999999999999999999 9888888886542 11
Q ss_pred cccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcc--c----CCCCCCCCC-------------
Q 043137 162 GSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATN--V----GDEGGFAPN------------- 222 (445)
Q Consensus 162 g~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~--~----~~~g~~~~~------------- 222 (445)
. +. ++..+++.+...++|+++| .|+|..... . +..-.+.+.
T Consensus 148 ~-------~~---------~~~~~~~~~~~~~Gf~~iK----ikvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (426)
T 4e4f_A 148 H-------SI---------DEVLDDYAKHRDQGFKAIR----VQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWST 207 (426)
T ss_dssp S-------SH---------HHHHHHHHHHHHTTCSEEE----ECC-------------------CCSEESSSCCEEEECH
T ss_pred C-------CH---------HHHHHHHHHHHHcCCCEEE----EeccCCccccccccccccccccccccccccccccccch
Confidence 1 11 2223444444445676654 454421100 0 000000110
Q ss_pred ---ccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeee
Q 043137 223 ---IQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVS 299 (445)
Q Consensus 223 ---~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~ 299 (445)
++.+.++++++|+++ | +++.|++|+ |++||.++++++ .+.++++++.|
T Consensus 208 ~~~~~~~~e~v~avR~a~---G--~d~~L~vDa-----------------------N~~~~~~~A~~~-~~~L~~~~i~~ 258 (426)
T 4e4f_A 208 EKYLDFTPKLFEAVRDKF---G--FNEHLLHDM-----------------------HHRLTPIEAARF-GKSVEDYRLFW 258 (426)
T ss_dssp HHHHHHHHHHHHHHHHHH---T--TSSEEEEEC-----------------------TTCSCHHHHHHH-HHHTGGGCCSE
T ss_pred hHHHHHHHHHHHHHHHHh---C--CCCEEEEEC-----------------------CCCCCHHHHHHH-HHHHhhcCCCE
Confidence 000124455555544 5 589999999 367899999987 56789999999
Q ss_pred EECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEe
Q 043137 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMA 379 (445)
Q Consensus 300 iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~ 379 (445)
||||++++|++++++|+++++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++.
T Consensus 259 iEeP~~~~d~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~ga~d~v~~k~~~~GGit~~~~ia~~A~~~gi~v~~ 335 (426)
T 4e4f_A 259 MEDPTPAENQACFRLIRQHTV--TPIAVGEVF-NSIWDCKQLIEEQLIDYIRTTITHAGGITGMRRIADFASLYQVRTGS 335 (426)
T ss_dssp EECCSCCSSGGGGHHHHTTCC--SCEEECTTC-CSGGGTHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEEEE
T ss_pred EECCCChHHHHHHHHHHhcCC--CCEEeCCCc-CCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEee
Confidence 999999999999999999998 999999985 56999999999999999999999999999999999999999999754
Q ss_pred cCCCCCChhh--HHHHHHhhhc
Q 043137 380 SHRSGETEDT--FIADLSVGLA 399 (445)
Q Consensus 380 ~~~~~et~~~--~~~~la~a~~ 399 (445)
++.+.++.++ +++||+.++.
T Consensus 336 h~~~~~s~i~~aa~~hlaaa~p 357 (426)
T 4e4f_A 336 HGPSDLSPICMAAALHFDLWVP 357 (426)
T ss_dssp CCCTTSCHHHHHHHHHHHHHCT
T ss_pred eCCCCccHHHHHHHHHHHHhCC
Confidence 3334567655 4556665543
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-48 Score=390.83 Aligned_cols=304 Identities=17% Similarity=0.210 Sum_probs=231.7
Q ss_pred eEEEEEEEEEEecC--------C----CCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFDS--------R----GNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~~--------~----g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+..+ . .+..++|+|+ |+|++|||++.... +++|++++...+.+.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~-d~G~~G~GE~~~~~-------------~~~~~~e~~~~~~~~ 66 (370)
T 1chr_A 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVY-SEGLVGVGEGGSVG-------------GPVWSAECAETIKII 66 (370)
T ss_dssp CCCCCCCEECCCCCCCCCCTTCCSSCCCCCCEECCBC-SSSCBCCEECCCBT-------------TBTTSSCCHHHHHHH
T ss_pred CEEEEEEEEEEEccCCCCeEccceEEeeeeEEEEEEE-ECCcEEEEccccCC-------------CCCCCCCCHHHHHHH
Confidence 89999999887432 1 1356899999 99999999654211 124677778888888
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
|++.++|.|+|+||.+++++|+.|++.+. + ..+|++|||+||||+.||.+|+|||+||| |..+++
T Consensus 67 i~~~l~p~l~G~d~~~~~~~~~~l~~~~~----------g--~~~A~said~ALwDl~gK~~g~Pl~~LLG---g~~r~~ 131 (370)
T 1chr_A 67 VERYLAPHLLGTDAFNVSGALQTMARAVT----------G--NASAKAAVEMALLDLKARALGVSIAELLG---GPLRSA 131 (370)
T ss_dssp HHHHTHHHHTTSCTTCHHHHHHHHHHHCS----------S--CHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSCSE
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHHhc----------C--cHHHHHHHHHHHHHHHHHHcCCCHHHHhC---CCCCCc
Confidence 88889999999999999999999984332 1 15799999999999999999999999999 987888
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGV-EVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEG 229 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~-~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~ 229 (445)
+|++. +++.+. . .+.++++.+... ++|+++| .|+|. .+.+.+.++
T Consensus 132 v~~~~--t~~~~~-------~---------~~~~~~~~~~~~~~G~~~~K----iKvg~------------~~~~~d~~~ 177 (370)
T 1chr_A 132 IPIAW--TLASGD-------T---------KRDLDSAVEMIERRRHNRFK----VKLGF------------RSPQDDLIH 177 (370)
T ss_dssp EEBEE--EECSSS-------H---------HHHHHHHHHHHHTTCCCEEE----EECSS------------SCSHHHHHH
T ss_pred eeEEE--EecCCC-------c---------HHHHHHHHHHHHHCCCCEEE----EecCC------------CCHHHHHHH
Confidence 88842 222220 0 122334433332 2343332 34331 122334555
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCH
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDW 309 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~ 309 (445)
++++|+++ | +++.|++|+ |++||.++++++ .+.++++++.|||||++++|+
T Consensus 178 v~avR~~~---g--~~~~l~vDa-----------------------n~~~~~~~a~~~-~~~l~~~~i~~iEqP~~~~~~ 228 (370)
T 1chr_A 178 MEALSNSL---G--SKAYLRVDV-----------------------NQAWDEQVASVY-IPELEALGVELIEQPVGRENT 228 (370)
T ss_dssp HHHHHHHS---S--TTCCEEEEC-----------------------TTCCCTTHHHHH-THHHHTTTEEEEECCSCTTCH
T ss_pred HHHHHHhc---C--CCCEEEEEC-----------------------CCCCCHHHHHHH-HHHHHhcCCCEEECCCCcccH
Confidence 55555443 5 479999999 367888899987 567899999999999999999
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+++++|+++++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++++| +.|+.++
T Consensus 229 ~~~~~l~~~~~--iPia~dE~~-~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~g~~~~~~~-~~es~i~ 304 (370)
T 1chr_A 229 QALRRLSDNNR--VAIMADESL-STLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGT-MLDSTIG 304 (370)
T ss_dssp HHHHHHHHHSC--SEEEESSSC-CSHHHHHHHHTTTSCSEEEECTTTSCSHHHHHHHHHHHHHHTCEEEECC-SCCTTHH
T ss_pred HHHHHHHhhCC--CCEEeCCCc-CCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCeEEecC-CCccHHH
Confidence 99999999998 999999985 6799999999999999999999999999999999999999999998776 5677776
Q ss_pred HHHHHHhhhcCCc
Q 043137 390 FIADLSVGLATGQ 402 (445)
Q Consensus 390 ~~~~la~a~~~~~ 402 (445)
.++.++++...+.
T Consensus 305 ~aa~~hlaaa~~~ 317 (370)
T 1chr_A 305 TSVALQLYSTVPS 317 (370)
T ss_dssp HHHHHHHHTTSSC
T ss_pred HHHHHHHHHhCCC
Confidence 5555544443443
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=388.46 Aligned_cols=302 Identities=16% Similarity=0.200 Sum_probs=230.2
Q ss_pred eEEEEEEEEEEecC--------CC-----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHH
Q 043137 3 ITITAVKARQIFDS--------RG-----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVS 69 (445)
Q Consensus 3 mkI~~v~~~~v~~~--------~g-----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~ 69 (445)
|||++|+++.+..+ .+ +..++|+|+||+|++|||++...+ .|+ ++...+.+
T Consensus 8 mkI~~i~~~~~~~Pl~~p~~~s~g~~~~~~~~~~V~v~td~G~~G~GE~~~~~---------------~~~-e~~~~~~~ 71 (385)
T 3i6e_A 8 QKIIAMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAEGFGEASPWA---------------VFT-GTPEASYA 71 (385)
T ss_dssp SBEEEEEEEEEECCC--------------CEEEEEEEEETTSCEEEEEECCCT---------------TTT-CCHHHHHH
T ss_pred cEEEEEEEEEEecccCCCeeccCcEEeceeeEEEEEEEECCCCEEEEeeccCC---------------CcC-CCHHHHHH
Confidence 69999999888532 22 245899999999999999654321 022 44667777
Q ss_pred HHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcc
Q 043137 70 NVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNL 149 (445)
Q Consensus 70 ~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~ 149 (445)
.|++.++|.|+|+||.+++++|+.|++.+. + ..+|++|||+||||+.||.+|+|||+||| |..++
T Consensus 72 ~i~~~l~p~l~G~d~~~~~~~~~~l~~~~~----------~--~~~A~said~ALwDl~gk~~g~Pl~~LLG---g~~r~ 136 (385)
T 3i6e_A 72 ALDRYLRPLVIGRRVGDRVAIMDEAARAVA----------H--CTEAKAALDSALLDLAGRISNLPVWALLG---GKCRD 136 (385)
T ss_dssp HHHHTTHHHHTTCBGGGHHHHHHHHHHHSS----------S--CHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCSCS
T ss_pred HHHHHHHHHHCCCCccCHHHHHHHHHHHhc----------C--CHHHHHHHHHHHHHHHHHHcCCcHHHHhC---cccCC
Confidence 788889999999999999999999984321 1 25799999999999999999999999999 98778
Q ss_pred eeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHH
Q 043137 150 VLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEG 229 (445)
Q Consensus 150 ~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~ 229 (445)
++|++. +++.+ + ++..++++.+...++|+++| .|+|. .+.+.+.++
T Consensus 137 ~v~~~~--t~~~~-------~---------~~~~~~~a~~~~~~G~~~~K----~Kvg~------------~~~~~d~~~ 182 (385)
T 3i6e_A 137 TIPLSC--SIANP-------D---------FDADIALMERLRADGVGLIK----LKTGF------------RDHAFDIMR 182 (385)
T ss_dssp EEEBEE--EECCS-------S---------HHHHHHHHHHHHHHTCCEEE----EECSS------------SCHHHHHHH
T ss_pred ceEEEE--EcCCC-------C---------HHHHHHHHHHHHHcCCCEEE----EecCC------------CCHHHHHHH
Confidence 888743 22211 1 12223444444445565543 44431 122334455
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCH
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDW 309 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~ 309 (445)
++++|+++ +++.|++|+ |++||.++++++ .+.++++++.|||||++++|+
T Consensus 183 v~avR~a~------~~~~l~vDa-----------------------n~~~~~~~A~~~-~~~L~~~~i~~iEqP~~~~d~ 232 (385)
T 3i6e_A 183 LELIARDF------PEFRVRVDY-----------------------NQGLEIDEAVPR-VLDVAQFQPDFIEQPVRAHHF 232 (385)
T ss_dssp HHHHHHHC------TTSEEEEEC-----------------------TTCCCGGGHHHH-HHHHHTTCCSCEECCSCTTCH
T ss_pred HHHHHHhC------CCCeEEEEC-----------------------CCCCCHHHHHHH-HHHHHhcCCCEEECCCCcccH
Confidence 55444443 589999999 367888899987 456899999999999999999
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+++++|+++++ +||++||+. .++++++++++.+++|++|||++++||||++++++++|+++|++++++| +.|+.++
T Consensus 233 ~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~-~~es~i~ 308 (385)
T 3i6e_A 233 ELMARLRGLTD--VPLLADESV-YGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGD-MFEAGLA 308 (385)
T ss_dssp HHHHHHHTTCS--SCEEESTTC-CSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECC-CSCCHHH
T ss_pred HHHHHHHHhCC--CCEEEeCCc-CCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCEEEeCC-CCccHHH
Confidence 99999999988 999999985 6799999999999999999999999999999999999999999997766 5788776
Q ss_pred HHHHHHhhhcCCcc
Q 043137 390 FIADLSVGLATGQI 403 (445)
Q Consensus 390 ~~~~la~a~~~~~~ 403 (445)
..+.++++...+++
T Consensus 309 ~aa~~hlaaa~~~~ 322 (385)
T 3i6e_A 309 HLAGTHMIAATPEI 322 (385)
T ss_dssp HHHHHHHHHTCTTE
T ss_pred HHHHHHHHHhCCCC
Confidence 55554444334443
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-47 Score=387.53 Aligned_cols=301 Identities=14% Similarity=0.205 Sum_probs=219.9
Q ss_pred ceEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcC
Q 043137 2 AITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAG 81 (445)
Q Consensus 2 ~mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG 81 (445)
.||||+|++... ++.++|+|+||+|++|||+++. |. .......+++.++|.|+|
T Consensus 22 ~mkIt~v~~~~~-----~~~~~V~v~Td~G~~G~GE~~~------------------~~---~~~~~~~i~~~l~p~LiG 75 (388)
T 3tcs_A 22 SMKLKAIETFTN-----DAVGFVRVTTQDGAQGWGQVST------------------YH---ADITCTVLHRQVAPWMLG 75 (388)
T ss_dssp -CBEEEEEEEEC-----SSCEEEEEEETTSCEEEEECCS------------------SS---HHHHHHHHHHHTHHHHTT
T ss_pred ccEEEEEEEEEe-----CCeEEEEEEECCCCEEEEeccC------------------Cc---cHHHHHHHHHHHHHHhCC
Confidence 389999997653 3468999999999999997643 11 123344577889999999
Q ss_pred CCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecC
Q 043137 82 KDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVING 161 (445)
Q Consensus 82 ~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~g 161 (445)
+||.+++++|+.|++..... .+....+|+|||||||||+.||.+|+|||+||| |.. +++|+|..+. +
T Consensus 76 ~d~~~~e~l~~~~~~~~~~~-------~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLG---g~~-~~v~~y~s~~--~ 142 (388)
T 3tcs_A 76 QDITDLDDLLDIVTEREHKF-------PGSYLRRAMAGVDTAIWDLRGKQQGKPVAEVLG---GTP-GLIRAYASSM--K 142 (388)
T ss_dssp SBCTTHHHHHHHHHHHTTTC-------CBHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCC-EEEEEEEECC--C
T ss_pred CCcccHHHHHHHHHHhhhcc-------CCcHHHHHHHHHHHHHHHHHHhHcCCcHHHHhC---CCC-CceEEEEecC--c
Confidence 99999999999998321110 123335699999999999999999999999999 864 5676643211 1
Q ss_pred cccCCCCcccceeeeccCChhcHHHHHHHH-HHHHHHHHHHHHhhcCCCCcccCCCCCCCC--CccChHHHHHHHHHHHH
Q 043137 162 GSHAGNKLAMQEFMILPVGASCFKEAMKMG-VEVYHHLKAVIKKKYGQDATNVGDEGGFAP--NIQENKEGLELLNTAIA 238 (445)
Q Consensus 162 g~~~~~~~~~~e~~~~p~~~~~~~~a~~~~-~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~--~~~~~~~~l~~l~~av~ 238 (445)
. ..+. .+..+++.+.. .++|+++| .|+|.. ..... ..+.+.+.++++|+++
T Consensus 143 ~-----~~~~---------~~~~~~~~~~~~~~Gf~~~K----~KvG~~-------~~~d~~~~~~~~~~~v~avReav- 196 (388)
T 3tcs_A 143 R-----DITP---------RDEAERLKRLRDTQGFTAFK----VRAGAE-------VGRNRDEWPGRTEEIIPTMRREL- 196 (388)
T ss_dssp S-----SSCH---------HHHHHHHHHHHHHHCCCEEE----EECSCT-------TCTTCCSSTTHHHHHHHHHHHHH-
T ss_pred C-----CCCh---------HHHHHHHHHHHHhcCCCEEE----EccCCC-------cccccccchhHHHHHHHHHHHHh-
Confidence 0 0111 11223332221 33555543 454421 11000 1122345666666655
Q ss_pred HhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHH
Q 043137 239 KAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSE 318 (445)
Q Consensus 239 ~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~ 318 (445)
| +++.|++|+ |+.||.++++++ .+.++++++.|||||++++|++++++|+++
T Consensus 197 --G--~d~~l~vDa-----------------------N~~~~~~~A~~~-~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~ 248 (388)
T 3tcs_A 197 --G--DDVDLLIDA-----------------------NSCYTPDRAIEV-GHMLQDHGFCHFEEPCPYWELAQTKQVTDA 248 (388)
T ss_dssp --C--SSSEEEEEC-----------------------TTCCCHHHHHHH-HHHHHHTTCCEEECCSCTTCHHHHHHHHHH
T ss_pred --C--CCCeEEEeC-----------------------CCCcCHHHHHHH-HHHHhhcCCeEEECCCCccCHHHHHHHHHh
Confidence 6 589999999 367899999987 566899999999999999999999999999
Q ss_pred hCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCC-hhhHHHHHHhh
Q 043137 319 VGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGET-EDTFIADLSVG 397 (445)
Q Consensus 319 ~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et-~~~~~~~la~a 397 (445)
++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|+++++ |++.++ ...+.+||+.+
T Consensus 249 ~~--iPIa~dE~~-~~~~~~~~~i~~~a~d~v~~d~~~~GGit~a~kia~~A~~~gv~~~~-h~~~~~~~~~a~~hl~aa 324 (388)
T 3tcs_A 249 LD--IDVTGGEQD-CDLPTWQRMIDMRAVDIVQPDILYLGGICRTLRVVEMARAAGLPVTP-HCANWSLVTLFTMHLLRA 324 (388)
T ss_dssp CS--SCEEECTTC-CCHHHHHHHHHHTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCCBCC-CCCSTTTHHHHHHHHHTT
T ss_pred cC--CCEEcCCcc-CCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEe-cCCCcHHHHHHHHHHHHh
Confidence 98 999999985 67999999999999999999999999999999999999999999855 544443 22345576666
Q ss_pred hc
Q 043137 398 LA 399 (445)
Q Consensus 398 ~~ 399 (445)
+.
T Consensus 325 ~p 326 (388)
T 3tcs_A 325 IP 326 (388)
T ss_dssp CT
T ss_pred CC
Confidence 54
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-48 Score=389.45 Aligned_cols=301 Identities=15% Similarity=0.159 Sum_probs=228.5
Q ss_pred eEEEEEEEEEEec--------CCC----Cc-eEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHH
Q 043137 3 ITITAVKARQIFD--------SRG----NP-TVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVS 69 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~g----~~-~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~ 69 (445)
|||++|+++.+.. +.+ +. .++|+|+||+|++|||++...+. |+ ++...+.+
T Consensus 6 ~kI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~---------------~~-e~~~~~~~ 69 (377)
T 3my9_A 6 SVVERIRIFLVESPIKMARLQGVGNVKGSVKRVLLEVTSADGIVGWGEAAPWEV---------------FT-GTPEAAFS 69 (377)
T ss_dssp CBEEEEEEEEEEECEEC----------CCEEEEEEEEEETTSCEEEEEECCC---------------------CHHHHHH
T ss_pred CEEEEEEEEEEeccccCCeeccceEEEeeeeEEEEEEEECCCCEEEEecccCCC---------------cC-CCHHHHHH
Confidence 7999999988843 222 35 78999999999999996543210 21 34567777
Q ss_pred HHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcc
Q 043137 70 NVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNL 149 (445)
Q Consensus 70 ~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~ 149 (445)
.|++.++|.|+|+||.+++.+|+.|++.+. + ..+|++|||+||||+.||.+|+|||+||| |..++
T Consensus 70 ~i~~~l~p~liG~d~~~~~~~~~~l~~~~~----------~--~~~A~said~AlwDl~gk~~g~Pl~~LLG---g~~r~ 134 (377)
T 3my9_A 70 ALDIYLRPLILGAPIKRVRELMARMDKMLV----------G--HGEAKAAVEMALLDILGKATGLSVADLLG---GRVRD 134 (377)
T ss_dssp HHHTTTHHHHTTCBTTCHHHHHHHHHHHSC----------S--CHHHHHHHHHHHHHHHHHHHTCBTTGGGT---CCSCS
T ss_pred HHHHHHHHHhCCCCcCCHHHHHHHHHHHhc----------C--chhHHHHHHHHHHHHHHHHcCCcHHHHhC---CCCCC
Confidence 787779999999999999999999984321 1 25799999999999999999999999999 98788
Q ss_pred eeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHH
Q 043137 150 VLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEG 229 (445)
Q Consensus 150 ~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~ 229 (445)
++|++.. ++.+ + ++..++++.+...++|+++| .|+|. .+.+.+.++
T Consensus 135 ~v~~~~t--~~~~-------~---------~~~~~~~a~~~~~~G~~~~K----~Kvg~------------~~~~~d~~~ 180 (377)
T 3my9_A 135 RIPLSFS--IADP-------D---------FDADLERMRAMVPAGHTVFK----MKTGV------------KPHAEELRI 180 (377)
T ss_dssp EEEBCEE--ECCS-------S---------HHHHHHHHHHHTTTTCCEEE----EECSS------------SCHHHHHHH
T ss_pred eEEEEEe--cCCC-------C---------HHHHHHHHHHHHHcCCCEEE----EccCC------------CcHHHHHHH
Confidence 8887532 2211 1 12223444444334555443 34331 122344566
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCH
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDW 309 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~ 309 (445)
++++|+++ | +++.|++|+| ++||.++++++ .+.++++++.|||||++++|+
T Consensus 181 v~avR~~~---g--~~~~l~vDan-----------------------~~~~~~~A~~~-~~~l~~~~i~~iEqP~~~~d~ 231 (377)
T 3my9_A 181 LETMRGEF---G--ERIDLRLDFN-----------------------QALTPFGAMKI-LRDVDAFRPTFIEQPVPRRHL 231 (377)
T ss_dssp HHHHHHHH---G--GGSEEEEECT-----------------------TCCCTTTHHHH-HHHHHTTCCSCEECCSCTTCH
T ss_pred HHHHHHHh---C--CCCeEEEeCC-----------------------CCcCHHHHHHH-HHHHhhcCCCEEECCCCccCH
Confidence 66666655 5 5899999993 57888899987 567899999999999999999
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+++++|+++++ +||++||+. +++++++++++.+++|++|+|++++||||++++++++|+++|++++++| +.|+.++
T Consensus 232 ~~~~~l~~~~~--ipIa~dE~~-~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~-~~es~i~ 307 (377)
T 3my9_A 232 DAMAGFAAALD--TPILADESC-FDAVDLMEVVRRQAADAISVKIMKCGGLMKAQSLMAIADTAGLPGYGGT-LWEGGIA 307 (377)
T ss_dssp HHHHHHHHHCS--SCEEESTTC-SSHHHHHHHHHHTCCSEEECCHHHHTSHHHHHHHHHHHHHHTCCEECCE-ECCSHHH
T ss_pred HHHHHHHHhCC--CCEEECCcc-CCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEecCC-CCCcHHH
Confidence 99999999998 999999985 6799999999999999999999999999999999999999999997766 5788776
Q ss_pred HHHHHHhhhcCC
Q 043137 390 FIADLSVGLATG 401 (445)
Q Consensus 390 ~~~~la~a~~~~ 401 (445)
..+.++++...+
T Consensus 308 ~aa~~hlaaa~~ 319 (377)
T 3my9_A 308 LAAGTQLIAATP 319 (377)
T ss_dssp HHHHHHHHHTCT
T ss_pred HHHHHHHHHhCC
Confidence 555444433333
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=389.50 Aligned_cols=296 Identities=16% Similarity=0.187 Sum_probs=233.3
Q ss_pred CceEEEEEEEEEEe--------cCCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHH
Q 043137 1 MAITITAVKARQIF--------DSRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAV 68 (445)
Q Consensus 1 ~~mkI~~v~~~~v~--------~~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~ 68 (445)
+.|||++|+++.+. .+.+ +++++|+|+||+|++|||+++..+ .++|+++++.++.
T Consensus 18 ~~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v~td~G~~G~GE~~~~~-------------~~~~~~e~~~~~~ 84 (386)
T 1wue_A 18 SHMNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFE-------------QPDYVQETLVTER 84 (386)
T ss_dssp CCCCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCS-------------STTSSSCCHHHHH
T ss_pred CcCEEEEEEEEEEecccCCCccccceEEecCcEEEEEEEECCCCEEEEEeecCC-------------CCcccCCcHHHHH
Confidence 35899999998773 2222 357899999999999999765421 1237778888888
Q ss_pred HHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCc
Q 043137 69 SNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKN 148 (445)
Q Consensus 69 ~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~ 148 (445)
..+++.++|.|+|+|+.+++.+|+.|. .++ + +.+|++|||+||||+.||.+|+|||+||| | .+
T Consensus 85 ~~i~~~l~p~l~G~d~~~~~~l~~~l~-~~~----------g--~~~A~~aid~AlwDl~~k~~g~Pl~~llG---g-~~ 147 (386)
T 1wue_A 85 FIIQQHLIPLLLTEAIEQPQEVSTIFE-EVK----------G--HWMGKAALETAIWDLYAKRQQKSLTEFFG---P-TR 147 (386)
T ss_dssp HHHHHTHHHHHTTSCCCSTHHHHHHGG-GSC----------S--CHHHHHHHHHHHHHHHHHHTTSBGGGGSS---S-CC
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHH-Hcc----------C--chHHHHHHHHHHHHHHHHHhCCcHHHHhC---C-CC
Confidence 889888999999999999999998887 432 1 15799999999999999999999999999 8 56
Q ss_pred ceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHH
Q 043137 149 LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKE 228 (445)
Q Consensus 149 ~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~ 228 (445)
+++|+|+. ++.+ .+. ++.++++.+...++|+++| .|+| + +.+.+
T Consensus 148 ~~v~~~~~--~g~~------~~~---------~~~~~~a~~~~~~G~~~~K----iKvg-------------~--~~d~~ 191 (386)
T 1wue_A 148 RKIPVGIS--LGIQ------EDL---------PQLLKQVQLAVEKGYQRVK----LKIR-------------P--GYDVE 191 (386)
T ss_dssp SEEECCEE--ECCC------SCH---------HHHHHHHHHHHHTTCSCEE----EECB-------------T--TBSHH
T ss_pred CeeEeeEE--ecCC------CCH---------HHHHHHHHHHHHhhhheEE----EeeC-------------c--HHHHH
Confidence 78888653 2111 011 2223455555555565544 3322 1 22466
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCC
Q 043137 229 GLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDD 308 (445)
Q Consensus 229 ~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D 308 (445)
+++++|+++ +++.|++|+| +.||.+++ ++ .+.+++|++.|||||++++|
T Consensus 192 ~v~avr~a~------~~~~l~vDaN-----------------------~~~~~~~a-~~-~~~l~~~~i~~iEqP~~~~d 240 (386)
T 1wue_A 192 PVALIRQHF------PNLPLMVDAN-----------------------SAYTLADL-PQ-LQRLDHYQLAMIEQPFAADD 240 (386)
T ss_dssp HHHHHHHHC------TTSCEEEECT-----------------------TCCCGGGH-HH-HHGGGGSCCSCEECCSCTTC
T ss_pred HHHHHHHhC------CCCeEEEeCC-----------------------CCCCHHHH-HH-HHHHHhCCCeEEeCCCCccc
Confidence 676666553 5799999993 56788888 76 56789999999999999999
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~ 388 (445)
+++|++|+++++ +||++||+. .++++++++++.+++|++|||++++||||++++++++|+++|++++++| +.|+.+
T Consensus 241 ~~~~~~l~~~~~--ipIa~dE~~-~~~~~~~~~i~~~a~d~i~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~-~~es~i 316 (386)
T 1wue_A 241 FLDHAQLQRELK--TRICLDENI-RSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLVWLGG-MFESGV 316 (386)
T ss_dssp SHHHHHHHTTCS--SCEEECTTC-CSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECC-CCCCHH
T ss_pred HHHHHHHHHhcC--CCEEeCCcc-CCHHHHHHHHHcCCCCEEEEchhhhCCHHHHHHHHHHHHHCCCeEEECC-CcccHH
Confidence 999999999988 999999985 5699999999999999999999999999999999999999999998877 468887
Q ss_pred hHHHHHHhh
Q 043137 389 TFIADLSVG 397 (445)
Q Consensus 389 ~~~~~la~a 397 (445)
+.+++++++
T Consensus 317 ~~aa~~hla 325 (386)
T 1wue_A 317 GRALNLQFA 325 (386)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766666555
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=388.44 Aligned_cols=302 Identities=18% Similarity=0.261 Sum_probs=225.9
Q ss_pred CceEEEEEEEEEEecC---------CC-----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHH
Q 043137 1 MAITITAVKARQIFDS---------RG-----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSK 66 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~---------~g-----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~ 66 (445)
|.|||++|+++.+..+ .+ +..++|+|+||+|++|||++.... +.|++++...
T Consensus 1 m~MkI~~i~~~~~~~pl~~p~~~~s~g~~~~~~~~~~V~v~td~G~~G~GE~~~~~--------------~~~~~e~~~~ 66 (386)
T 3fv9_G 1 MSLKITRIDIHRTDLPVRGGVYRLSGGREYHSYDATIVSIETDTGLTGWGESTPFG--------------STYIAAHAGG 66 (386)
T ss_dssp --CCEEEEEEEEEEEEBSSSCEEETTTEEESEEEEEEEEEEETTSCEEEEEECCST--------------TSSSSCCHHH
T ss_pred CCCEEEEEEEEEEEeecCCCceEecCceEEeeeeEEEEEEEECCCCEEEEecccCC--------------CccCcccHHH
Confidence 8999999999887421 12 245899999999999999653210 1255666677
Q ss_pred HHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCC
Q 043137 67 AVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGN 146 (445)
Q Consensus 67 a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~ 146 (445)
+.+.++ .++|.|+|+||.+++.+|+.|.+.+. + ..+|++|||+||||+.||.+|+|||+||| |.
T Consensus 67 ~~~~l~-~l~~~l~G~d~~~~~~~~~~l~~~~~----------g--~~~A~said~ALwDl~gk~~g~Pv~~LLG---g~ 130 (386)
T 3fv9_G 67 TRAALE-LLAPAILGMDPRQHDRIWDRMRDTLK----------G--HRDARAALDIACWDIAAQAAGLPLCDMTG---GR 130 (386)
T ss_dssp HHHHHH-HHHHHHTTSCTTCHHHHHHHHHHHCS----------S--CHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CC
T ss_pred HHHHHH-HHHHHhCCCCcCCHHHHHHHHHHHhc----------C--cHHHHHHHHHHHHHHHHHHcCCCHHHHhC---CC
Confidence 777775 59999999999999999999984332 1 25799999999999999999999999999 98
Q ss_pred CcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCh
Q 043137 147 KNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQEN 226 (445)
Q Consensus 147 ~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~ 226 (445)
.++++|++. +++.+ + ++...+++.+...++|+++| .|+|.. .. .. ..
T Consensus 131 ~~~~v~~y~--s~~~~-------~---------~e~~~~~a~~~~~~G~~~~K----~Kvg~~-------~~-~~---~~ 177 (386)
T 3fv9_G 131 VAGPVPVIS--SIGGD-------T---------PEAMRAKVARHRAQGFKGHS----IKIGAS-------EA-EG---GP 177 (386)
T ss_dssp CSSCBCEEE--EECSC-------C---------HHHHHHHHHHHHHTTCCEEE----EECCCC-------TT-TT---HH
T ss_pred CCCceeeeE--ecCCC-------C---------HHHHHHHHHHHHHCCCCEEE----EeccCC-------CC-CC---CH
Confidence 777888754 33211 1 12223444444444565543 454421 00 01 12
Q ss_pred HHHHHHHHHHHHH-hCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhh-ccCCeeeEECCC
Q 043137 227 KEGLELLNTAIAK-AGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFI-SDYPIVSIEDPF 304 (445)
Q Consensus 227 ~~~l~~l~~av~~-~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l-~~~~i~~iEdP~ 304 (445)
.+.++.+ +++|+ +| +++.|++|+ |+.||.+++++++ +.+ +++++ |||||+
T Consensus 178 ~~d~~~v-~avR~a~G--~~~~L~vDa-----------------------N~~~~~~~A~~~~-~~l~~~~~i-~iEeP~ 229 (386)
T 3fv9_G 178 ALDAERI-TACLADRQ--PGEWYLADA-----------------------NNGLTVEHALRML-SLLPPGLDI-VLEAPC 229 (386)
T ss_dssp HHHHHHH-HHHTTTCC--TTCEEEEEC-----------------------TTCCCHHHHHHHH-HHSCSSCCC-EEECCC
T ss_pred HHHHHHH-HHHHHHcC--CCCeEEEEC-----------------------CCCCCHHHHHHHH-HHhhccCCc-EEecCC
Confidence 3344444 34554 45 589999999 3678999999874 567 78999 999999
Q ss_pred CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCC
Q 043137 305 DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSG 384 (445)
Q Consensus 305 ~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~ 384 (445)
+ |++++++|+++++ +||++||+. .++++++++++.+++|++|||++++||||++++++++|+++|++++++|+ .
T Consensus 230 ~--~~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~-~ 303 (386)
T 3fv9_G 230 A--SWAETKSLRARCA--LPLLLDELI-QTETDLIAAIRDDLCDGVGLKVSKQGGITPMLRQRAIAAAAGMVMSVQDT-V 303 (386)
T ss_dssp S--SHHHHHHHHTTCC--SCEEESTTC-CSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCEEEEECS-S
T ss_pred C--CHHHHHHHHhhCC--CCEEeCCCc-CCHHHHHHHHHhCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEEeCCC-C
Confidence 8 8999999999998 999999985 67999999999999999999999999999999999999999999998884 6
Q ss_pred CChhhH--HHHHHhhhc
Q 043137 385 ETEDTF--IADLSVGLA 399 (445)
Q Consensus 385 et~~~~--~~~la~a~~ 399 (445)
|+.++. .+||+.++.
T Consensus 304 es~i~~aa~~hlaaa~~ 320 (386)
T 3fv9_G 304 GSQISFAAILHLAQSTP 320 (386)
T ss_dssp CCHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 787654 455555543
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-47 Score=390.45 Aligned_cols=311 Identities=18% Similarity=0.154 Sum_probs=224.7
Q ss_pred CceEEEEEEEEEEecC---CCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHH-----
Q 043137 1 MAITITAVKARQIFDS---RGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVN----- 72 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~---~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~----- 72 (445)
+.||||+|+++.+..+ ..+..++|+|+||+|++|||++...+ ......++
T Consensus 8 ~~mkI~~i~~~~v~~p~~~~~~~~~~V~v~td~G~~G~GE~~~~~----------------------~~~~~~~~~~~~~ 65 (394)
T 3mkc_A 8 AVAPIKSIEFIPVNYQASNWSQNTVVVKVTDENGVYGLGEADGSP----------------------DAILAYANIETEH 65 (394)
T ss_dssp TCCCEEEEEEEEEEEC----CEEEEEEEEEETTSCEEEEEECSCH----------------------HHHHHHHTCCCCB
T ss_pred CCCeEEEEEEEEEecCCCCCCccEEEEEEEECCCCeEEEEecCcH----------------------HHHHHHHhcccch
Confidence 4589999999988643 23467999999999999999764311 11111222
Q ss_pred ---HhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcc
Q 043137 73 ---AIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNL 149 (445)
Q Consensus 73 ---~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~ 149 (445)
+.++|.|+|+||.+++++|+.|++... | .|+++...+|+||||+||||+.||.+|+|||+||| |..++
T Consensus 66 ~~~~~l~p~liG~dp~~~e~~~~~l~~~~~-----~-~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLG---G~~r~ 136 (394)
T 3mkc_A 66 KWLTNITEKAIGRLPIEINAIWDAMYDATQ-----W-QGMRGLGMFALSGIDMALYDLAGKQLGVPAYQLLG---GTNKD 136 (394)
T ss_dssp TTBCCTTTTTTTSCTTCHHHHHHHHHHHTH-----H-HHSSTHHHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCSCS
T ss_pred hhHHHHHHHhCCCChhHHHHHHHHHHHhhh-----h-cCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHcC---CCcCC
Confidence 248999999999999999999984321 1 12234446899999999999999999999999999 98878
Q ss_pred eeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHh-hcCCCCcccCCCCCCCCCccChHH
Q 043137 150 VLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKK-KYGQDATNVGDEGGFAPNIQENKE 228 (445)
Q Consensus 150 ~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~-k~G~~~~~~~~~g~~~~~~~~~~~ 228 (445)
++|++. +++.... ...+.++. + ++..+++.+...++|+++| . |+|. . ..+.+.+.+
T Consensus 137 ~v~~y~--s~~~~~~--~~~~~~~~-~----~~~~~~a~~~~~~G~~~~K----~~k~g~-------~---~~~~~~d~e 193 (394)
T 3mkc_A 137 KVHPYL--TLYPAIP--VDASLDVA-I----KGYAPLLEKAKAHNIRAVK----VCVPIK-------A---DWSTKEVAY 193 (394)
T ss_dssp EECCEE--ECCCSCC---CCCHHHH-H----HHHHHHHHHHHHTTCSEEE----EECCTT-------C---CCCHHHHHH
T ss_pred eeEEEE--ecCCcCC--CCcchhhh-H----HHHHHHHHHHHHcCCCEEE----eCccCC-------C---ccCHHHHHH
Confidence 887743 3211010 00000000 0 0112233333333454443 3 3331 0 012334455
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCcc-CHHHHHHHHHHhhccCCeeeEECCCCcC
Q 043137 229 GLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKI-SGDALKDLYKSFISDYPIVSIEDPFDQD 307 (445)
Q Consensus 229 ~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~-t~~~ai~~~~~~l~~~~i~~iEdP~~~~ 307 (445)
+++++|+++ | +++.|++|+ |++| |.++++++ .+.++++++.|||||++++
T Consensus 194 ~v~avR~a~---G--~d~~l~vDa-----------------------N~~~~~~~~A~~~-~~~L~~~~i~~iEeP~~~~ 244 (394)
T 3mkc_A 194 YLRELRGIL---G--HDTDMMVDY-----------------------LYRFTDWYEVARL-LNSIEDLELYFAEATLQHD 244 (394)
T ss_dssp HHHHHHHHH---C--SSSEEEEEC-----------------------TTCCCCHHHHHHH-HHHTGGGCCSEEESCSCTT
T ss_pred HHHHHHHHh---C--CCCeEEEeC-----------------------CCCCCCHHHHHHH-HHHhhhcCCeEEECCCCch
Confidence 666555554 5 589999999 3678 89999988 5668999999999999999
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCCh
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETE 387 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~ 387 (445)
|++++++|+++++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++ .|++ ++.
T Consensus 245 d~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~-~h~~-~s~ 319 (394)
T 3mkc_A 245 DLSGHAKLVENTR--SRICGAEMS-TTRFEAEEWITKGKVHLLQSDYNRCGGLTELRRITEMATANNVQVM-PHNW-KTG 319 (394)
T ss_dssp CHHHHHHHHHHCS--SCBEECTTC-CHHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHTTCEEC-CCCC-SCH
T ss_pred hHHHHHHHHhhCC--CCEEeCCCC-CCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCEEe-ecCC-CcH
Confidence 9999999999998 999999985 5699999999999999999999999999999999999999999986 4544 887
Q ss_pred hhH--HHHHHhhhc
Q 043137 388 DTF--IADLSVGLA 399 (445)
Q Consensus 388 ~~~--~~~la~a~~ 399 (445)
++. .+||+++++
T Consensus 320 i~~aa~~hlaaa~p 333 (394)
T 3mkc_A 320 ITSAAAIHYQFAVG 333 (394)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCC
Confidence 664 556666554
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=383.82 Aligned_cols=301 Identities=18% Similarity=0.244 Sum_probs=231.7
Q ss_pred eEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+.. +.+ ++.++|+|+||+|++|||++...+ .|++++...+...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~~V~v~td~G~~G~GE~~~~~---------------~~~ge~~~~~~~~ 65 (354)
T 3jva_A 1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGI---------------FITGETLAGTLET 65 (354)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCT---------------TTTCCCHHHHHHH
T ss_pred CEEEEEEEEEEEEeccCCEEecCcEEeeceEEEEEEEECCCCEEEEeecCCC---------------CcCCCCHHHHHHH
Confidence 8999999987742 222 356899999999999999654311 2445666777777
Q ss_pred HHHhHh---hhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCC
Q 043137 71 VNAIIG---PALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNK 147 (445)
Q Consensus 71 i~~~l~---p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~ 147 (445)
|+ .++ |.|+|+||.+++.+|+.|. . .+ .+|++|||+||||+.||.+|+|||+||| | .
T Consensus 66 i~-~l~~~~p~l~G~d~~~~~~~~~~l~-~----~~----------~~A~~aid~AlwDl~gk~~g~Pl~~llG---g-~ 125 (354)
T 3jva_A 66 IE-LFGQAIIGLNPFNIEKIHEVMDKIS-A----FA----------PAAKAAIDIACYDLMGQKAQLPLYQLLG---G-Y 125 (354)
T ss_dssp HH-HHHTTSTTCCTTCHHHHHHHHHHHC-S----SC----------HHHHHHHHHHHHHHHHHHHTSBHHHHTT---C-S
T ss_pred HH-HHhhcCccccCCCcccHHHHHHHHh-c----cc----------HHHHHHHHHHHHHHHHHHcCCcHHHHhh---c-c
Confidence 77 789 9999999999999987775 1 11 4799999999999999999999999999 8 5
Q ss_pred cceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChH
Q 043137 148 NLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENK 227 (445)
Q Consensus 148 ~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~ 227 (445)
++++|++.. ++.+ .++...+++.+...++|+++| .|+|. +.+.+.
T Consensus 126 ~~~v~~~~~--~~~~----------------~~~~~~~~a~~~~~~G~~~~K----~K~g~-------------~~~~d~ 170 (354)
T 3jva_A 126 DNQVITDIT--LGID----------------EPNVMAQKAVEKVKLGFDTLK----IKVGT-------------GIEADI 170 (354)
T ss_dssp CSEEECCEE--ECSC----------------CHHHHHHHHHHHHHTTCSEEE----EECCS-------------CHHHHH
T ss_pred CCeeeeeEE--eCCC----------------CHHHHHHHHHHHHHhCCCeEE----EEeCC-------------CHHHHH
Confidence 677876432 2111 112234455554445565543 44431 113345
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcC
Q 043137 228 EGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQD 307 (445)
Q Consensus 228 ~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~ 307 (445)
+.++++|+++ | +++.|++|+ |++||.++++++ .+.++++++.|||||++++
T Consensus 171 ~~v~avR~a~---g--~~~~l~vDa-----------------------n~~~~~~~a~~~-~~~L~~~~i~~iEqP~~~~ 221 (354)
T 3jva_A 171 ARVKAIREAV---G--FDIKLRLDA-----------------------NQAWTPKDAVKA-IQALADYQIELVEQPVKRR 221 (354)
T ss_dssp HHHHHHHHHH---C--TTSEEEEEC-----------------------TTCSCHHHHHHH-HHHTTTSCEEEEECCSCTT
T ss_pred HHHHHHHHHc---C--CCCeEEEEC-----------------------CCCCCHHHHHHH-HHHHHhcCCCEEECCCChh
Confidence 5666555554 5 589999999 367899999988 4568999999999999999
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCCh
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETE 387 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~ 387 (445)
|++++++|+++++ +||++||+ ++++++++++++.+++|++|+|++++||+|++++++++|+++|++++++|+.+|+.
T Consensus 222 d~~~~~~l~~~~~--iPIa~dE~-~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~~es~ 298 (354)
T 3jva_A 222 DLEGLKYVTSQVN--TTIMADES-CFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETT 298 (354)
T ss_dssp CHHHHHHHHHHCS--SEEEESTT-CCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCTTCCH
T ss_pred hHHHHHHHHHhCC--CCEEEcCC-cCCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCeEEecCCCcccH
Confidence 9999999999998 99999998 47799999999999999999999999999999999999999999999988655898
Q ss_pred hhHHHHHHhhhcCCcccc
Q 043137 388 DTFIADLSVGLATGQIKT 405 (445)
Q Consensus 388 ~~~~~~la~a~~~~~~~~ 405 (445)
++..+.++++...+.+..
T Consensus 299 i~~~a~~hlaaa~~~~~~ 316 (354)
T 3jva_A 299 IGITAAAHLAAAQKNITR 316 (354)
T ss_dssp HHHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHHHhcCCCCCc
Confidence 776555555544444433
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=390.45 Aligned_cols=301 Identities=16% Similarity=0.207 Sum_probs=221.6
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGK 82 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~ 82 (445)
||||+|+++.+ ..+.++|+|+||+|++|+|++... | +...+...++ .++|.|+|+
T Consensus 2 MkIt~i~~~~~----~~~~~~V~v~td~G~~G~GE~~~~---g-----------------~~~~~~~~i~-~l~p~liG~ 56 (405)
T 3rr1_A 2 VKITRLTTYRL----PPRWMFLKVETDEGVTGWGEPVIE---G-----------------RARTVEAAVH-ELSDYLIGQ 56 (405)
T ss_dssp CCEEEEEEEEE----TTTEEEEEEEETTSCEEEECCCCT---T-----------------CHHHHHHHHH-HHGGGTTTS
T ss_pred CeEEEEEEEEE----CCCEEEEEEEECCCCEEEEeCCCC---C-----------------CHHHHHHHHH-HHHHHHCCC
Confidence 89999999888 245799999999999999976531 1 0233344454 499999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCc
Q 043137 83 DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGG 162 (445)
Q Consensus 83 d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg 162 (445)
||.+++++|+.|++ .. + |+.+.+..+|+|||||||||+.||.+|+|||+||| |+.++++|++. .+++.
T Consensus 57 dp~~~e~~~~~l~~-~~----~--~~g~~~~~~A~said~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~y~--~~~~~ 124 (405)
T 3rr1_A 57 DPSRINDLWQTMYR-AG----F--YRGGPILMSAIAGIDQALWDIKGKVLGVPVYELLG---GLVRDKMRTYS--WVGGD 124 (405)
T ss_dssp CTTCHHHHHHHHHH-TS----S--SCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSCSCEEEEE--ECCCS
T ss_pred CcccHHHHHHHHHH-hh----c--ccCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHhC---ccccCceeeeE--eCCCC
Confidence 99999999999983 21 1 11233446899999999999999999999999999 98788888754 33211
Q ss_pred ccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHH-hC
Q 043137 163 SHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAK-AG 241 (445)
Q Consensus 163 ~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~-~g 241 (445)
+ ++...+++.+...++|+++| . .|... ..+........+.++.+ +++|+ +|
T Consensus 125 -------~---------~e~~~~~a~~~~~~G~~~iK----l-~G~~~------~~~~~~~~~~~~d~e~v-~avR~avG 176 (405)
T 3rr1_A 125 -------R---------PADVIAGMKALQAGGFDHFK----L-NGCEE------MGIIDTSRAVDAAVARV-AEIRSAFG 176 (405)
T ss_dssp -------S---------HHHHHHHHHHHHHTTCCEEE----E-ESCCS------SSCBCSHHHHHHHHHHH-HHHHHTTG
T ss_pred -------C---------HHHHHHHHHHHHHcCCCEEE----E-ecCCc------ccccccchhHHHHHHHH-HHHHHHhC
Confidence 1 12223444444444555543 2 22110 00111001123334444 33443 45
Q ss_pred CCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCC
Q 043137 242 YTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGE 321 (445)
Q Consensus 242 ~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~ 321 (445)
+++.|++|+ |++||.++++++ .+.++++++.|||||++++|++++++|+++++
T Consensus 177 --~d~~L~vDa-----------------------N~~~~~~~A~~~-~~~L~~~~i~~iEeP~~~~d~~~~~~l~~~~~- 229 (405)
T 3rr1_A 177 --NTVEFGLDF-----------------------HGRVSAPMAKVL-IKELEPYRPLFIEEPVLAEQAETYARLAAHTH- 229 (405)
T ss_dssp --GGSEEEEEC-----------------------CSCBCHHHHHHH-HHHHGGGCCSCEECSSCCSSTHHHHHHHTTCS-
T ss_pred --CCceEEEEC-----------------------CCCCCHHHHHHH-HHHHHhcCCCEEECCCCcccHHHHHHHHhcCC-
Confidence 589999999 367899999987 56789999999999999999999999999988
Q ss_pred CceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH--HHHHHhhhc
Q 043137 322 KVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF--IADLSVGLA 399 (445)
Q Consensus 322 ~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~--~~~la~a~~ 399 (445)
+||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|+++++++ + ++.++. .+||+.++.
T Consensus 230 -iPIa~dE~i-~~~~~~~~~l~~~a~d~v~~d~~~~GGitea~kia~lA~~~gi~v~~h~-~-~s~i~~aa~~hlaaa~p 305 (405)
T 3rr1_A 230 -LPIAAGERM-FSRFDFKRVLEAGGVSILQPDLSHAGGITECVKIAAMAEAYDVALAPHC-P-LGPIALAACLHVDFVSW 305 (405)
T ss_dssp -SCEEECTTC-CSHHHHHHHHHHCCCSEECCBTTTTTHHHHHHHHHHHHHTTTCEECCBC-C-SCHHHHHHHHHHHHHCT
T ss_pred -CCEEecCCc-CCHHHHHHHHHHhCCCeEEEChhhcCCHHHHHHHHHHHHHcCCEEEeCC-C-CcHHHHHHHHHHHHhCC
Confidence 999999985 6799999999999999999999999999999999999999999986654 3 576654 555555543
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-47 Score=383.01 Aligned_cols=302 Identities=19% Similarity=0.256 Sum_probs=235.9
Q ss_pred eEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+.. +.+ +++++|+|+||+|++|||+++.. +.|++++..++...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~~---------------~~~~~~~~~~~~~~ 65 (366)
T 1tkk_A 1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPT---------------LVITGDSMDSIESA 65 (366)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECCC---------------TTTTCCCHHHHHHH
T ss_pred CEEEEEEEEEEEccccCCEEecCeeEEEeeEEEEEEEECCCCEEEEEecCC---------------CCcCCCCHHHHHHH
Confidence 8999999987732 333 35689999999999999976542 12567778888888
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
+++.++|.|+|+||.+++.+|+.|.+.+. + ..+|++|||+||||+.||.+|+|||+||| | .+++
T Consensus 66 l~~~l~~~l~g~~~~~~~~~~~~l~~~~~----------~--~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g-~~~~ 129 (366)
T 1tkk_A 66 IHHVLKPALLGKSLAGYEAILHDIQHLLT----------G--NMSAKAAVEMALYDGWAQMCGLPLYQMLG---G-YRDT 129 (366)
T ss_dssp HHHTHHHHHTTCBGGGHHHHHHHHHHSSS----------S--CHHHHHHHHHHHHHHHHHHTTSBHHHHHT---C-CCSE
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHhc----------C--CHHHHHHHHHHHHHHHHHHcCCCHHHHhC---C-CCCc
Confidence 88889999999999999999999983221 1 25799999999999999999999999999 8 5677
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGL 230 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l 230 (445)
+|++. +++++ +. +...+++.+...++|+.+| .|.|. .+.+.+.+++
T Consensus 130 v~~~~--~~~~~-------~~---------~~~~~~a~~~~~~Gf~~iK----ik~g~------------~~~~~d~~~v 175 (366)
T 1tkk_A 130 LETDY--TVSVN-------SP---------EEMAADAENYLKQGFQTLK----IKVGK------------DDIATDIARI 175 (366)
T ss_dssp EEBCE--EECSC-------CH---------HHHHHHHHHHHHHTCCEEE----EECCS------------SCHHHHHHHH
T ss_pred eeeeE--EecCC-------CH---------HHHHHHHHHHHHcCCCeEE----EEeCC------------CCHHHHHHHH
Confidence 88754 23222 11 1223445554445565544 34331 1233345666
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhcc--CCeeeEECCCCcCC
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISD--YPIVSIEDPFDQDD 308 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~--~~i~~iEdP~~~~D 308 (445)
+++|+++ | +++.|++|+| ++||.+++++++ +.+++ +++.|||||++++|
T Consensus 176 ~avr~a~---g--~~~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~~~i~~iEqP~~~~d 226 (366)
T 1tkk_A 176 QEIRKRV---G--SAVKLRLDAN-----------------------QGWRPKEAVTAI-RKMEDAGLGIELVEQPVHKDD 226 (366)
T ss_dssp HHHHHHH---C--SSSEEEEECT-----------------------TCSCHHHHHHHH-HHHHHTTCCEEEEECCSCTTC
T ss_pred HHHHHHh---C--CCCeEEEECC-----------------------CCCCHHHHHHHH-HHHhhcCCCceEEECCCCccc
Confidence 6666554 5 5899999993 578889999885 56889 99999999999999
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~ 388 (445)
++++++|+++++ +||++||+. +++++++++++.+++|++++|++++||+|++++++++|+++|++++++|+ .||.+
T Consensus 227 ~~~~~~l~~~~~--ipIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~-~es~i 302 (366)
T 1tkk_A 227 LAGLKKVTDATD--TPIMADESV-FTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSM-IETKL 302 (366)
T ss_dssp HHHHHHHHHHCS--SCEEECTTC-CSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCCEEECCS-SCCHH
T ss_pred HHHHHHHHhhCC--CCEEEcCCC-CCHHHHHHHHHhCCCCEEEeehhhhcCHHHHHHHHHHHHHcCCcEEecCc-cccHH
Confidence 999999999998 999999985 77999999999999999999999999999999999999999999988874 78988
Q ss_pred hHHHHHHhhhcCCc
Q 043137 389 TFIADLSVGLATGQ 402 (445)
Q Consensus 389 ~~~~~la~a~~~~~ 402 (445)
+.+++++++...+.
T Consensus 303 ~~~a~~~laaa~~~ 316 (366)
T 1tkk_A 303 GITAAAHFAASKRN 316 (366)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCC
Confidence 76666655543333
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=387.98 Aligned_cols=303 Identities=18% Similarity=0.218 Sum_probs=226.0
Q ss_pred CceEEEEEEEEEEecCC--------------CCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHH
Q 043137 1 MAITITAVKARQIFDSR--------------GNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSK 66 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~~--------------g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~ 66 (445)
|.|||++|+++.+..+. .+..++|+|+||+|++|||++.. + + +. .++
T Consensus 1 m~MkI~~i~~~~~~~pl~~~~p~~~a~~~~~~~~~~~V~v~td~G~~G~GE~~~-~----~-----------~~---~~~ 61 (389)
T 3ozy_A 1 MSLKITEVKAHALSTPIPERMRVESGAGLKLNRQMILVEVRTDEGVTGVGSPSG-P----Y-----------DL---AVL 61 (389)
T ss_dssp -CCCEEEEEEEEEEEECCGGGCCEETTEEBCEEEEEEEEEEETTSCCEEECCCS-S----S-----------CH---HHH
T ss_pred CCCEEEEEEEEEEeccCcCCCcccccccccccceEEEEEEEECCCCEEEEecCC-C----C-----------Cc---hHH
Confidence 78999999999885331 13468999999999999997652 1 0 11 223
Q ss_pred HHHHHHHhHhhhhcCCCCCCHHHHHHHHHHH--hccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhcccc
Q 043137 67 AVSNVNAIIGPALAGKDPTEQTAIDNYMVQQ--LDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELS 144 (445)
Q Consensus 67 a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~--l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~ 144 (445)
....++ .++|.|+|+||.+++.+|+.|++. +.+ .|+++...+|++|||+||||+.||.+|+|||+|||
T Consensus 62 ~~~~i~-~l~p~l~G~d~~~~~~~~~~l~~~~~~~~------~g~~~~~~~A~said~AlwDl~gK~~g~Pl~~LLG--- 131 (389)
T 3ozy_A 62 KRAIED-VIGPQLIGEDPANINYLWHKVFHGEVSRN------LGHRSVGIAAMSGVDIALWDLKGRAMNQPIYQLLG--- 131 (389)
T ss_dssp HHHHHH-TTHHHHTTSCTTCHHHHHHHHHHHTHHHH------HCSBSHHHHHHHHHHHHHHHHHHHHHTCBHHHHTT---
T ss_pred HHHHHH-HHHHHHcCCCcchHHHHHHHHHhhhhhhc------cCCchHHHHHHHHHHHHHHHHhHhHcCCCHHHHhC---
Confidence 333454 599999999999999999999842 221 12334456899999999999999999999999999
Q ss_pred CCCcce-eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCc
Q 043137 145 GNKNLV-LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNI 223 (445)
Q Consensus 145 G~~~~~-vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~ 223 (445)
|..+++ +|++. ++.| +. .+ ++...+++.+...++|+++| .|+|. +.
T Consensus 132 g~~r~~~v~~y~--~~~~-~~----~~---------~e~~~~~a~~~~~~G~~~iK----iKvG~-------------~~ 178 (389)
T 3ozy_A 132 GKFHTRGVRAYA--SSIY-WD----LT---------PDQAADELAGWVEQGFTAAK----LKVGR-------------AP 178 (389)
T ss_dssp SCSSTTCEEEEE--EEEC-SS----CC---------HHHHHHHHHHHHHTTCSEEE----EECCS-------------CH
T ss_pred CcccCCceeeEE--ecCC-CC----CC---------HHHHHHHHHHHHHCCCCEEe----eccCC-------------CH
Confidence 987777 88744 3211 00 01 11223334333334454443 34331 23
Q ss_pred cChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECC
Q 043137 224 QENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDP 303 (445)
Q Consensus 224 ~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP 303 (445)
+.+.++++++|+++ | +++.|++|+ |++||.++++++ .+.++++++.|||||
T Consensus 179 ~~d~~~v~avR~a~---g--~d~~l~vDa-----------------------n~~~~~~~A~~~-~~~l~~~~i~~iEqP 229 (389)
T 3ozy_A 179 RKDAANLRAMRQRV---G--ADVEILVDA-----------------------NQSLGRHDALAM-LRILDEAGCYWFEEP 229 (389)
T ss_dssp HHHHHHHHHHHHHH---C--TTSEEEEEC-----------------------TTCCCHHHHHHH-HHHHHHTTCSEEESC
T ss_pred HHHHHHHHHHHHHc---C--CCceEEEEC-----------------------CCCcCHHHHHHH-HHHHHhcCCCEEECC
Confidence 44556666666555 5 589999999 367899999987 566899999999999
Q ss_pred CCcCCHHHHHHHH-HHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC
Q 043137 304 FDQDDWEHYAKLT-SEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 304 ~~~~D~~~~~~L~-~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~ 382 (445)
++++|++++++|+ ++++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|+++++ |+
T Consensus 230 ~~~~d~~~~~~l~~~~~~--iPIa~dE~i-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~-h~ 305 (389)
T 3ozy_A 230 LSIDDIEGHRILRAQGTP--VRIATGENL-YTRNAFNDYIRNDAIDVLQADASRAGGITEALAISASAASAHLAWNP-HT 305 (389)
T ss_dssp SCTTCHHHHHHHHTTCCS--SEEEECTTC-CHHHHHHHHHHTTCCSEECCCTTTSSCHHHHHHHHHHHHHTTCEECC-CC
T ss_pred CCcccHHHHHHHHhcCCC--CCEEeCCCC-CCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEe-cC
Confidence 9999999999999 8888 999999985 66999999999999999999999999999999999999999999865 53
Q ss_pred CCCChhh--HHHHHHhhhc
Q 043137 383 SGETEDT--FIADLSVGLA 399 (445)
Q Consensus 383 ~~et~~~--~~~~la~a~~ 399 (445)
.++.++ +.+||+.+++
T Consensus 306 -~~~~i~~aa~~hlaaa~~ 323 (389)
T 3ozy_A 306 -FNDIITVAANLHLVAASP 323 (389)
T ss_dssp -TTSHHHHHHHHHHHHHCC
T ss_pred -CCcHHHHHHHHHHHHhCC
Confidence 467665 4566666654
|
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-47 Score=381.87 Aligned_cols=296 Identities=19% Similarity=0.239 Sum_probs=226.2
Q ss_pred eEEEEEEEEEEecC--------CC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFDS--------RG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~~--------~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+..+ .+ +..++|+|+||+|++|||++... +.|++++...+.+.
T Consensus 5 mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~l~td~G~~G~GE~~~~---------------~~~~~e~~~~~~~~ 69 (365)
T 3ik4_A 5 TTIQAISAEAINLPLTEPFAIASGAQAVAANVLVKVQLADGTLGLGEAAPF---------------PAVSGETQTGTSAA 69 (365)
T ss_dssp TBEEEEEEEEEEEEBSCC--------CEEEEEEEEEEETTSCEEEEEECCC---------------CTTTCCCHHHHHHH
T ss_pred CEEEEEEEEEEEEecCCCeEccCeEEEeeeEEEEEEEECCCCEEEEecccC---------------CCcCcCCHHHHHHH
Confidence 89999999888532 22 24689999999999999965432 12556677777777
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
+ +.+.|.|+|+||.+++.+|+.|.+.+. ...+|++|||+||||+.||.+|+|||+||| |.. ++
T Consensus 70 l-~~l~~~l~G~d~~~~~~~~~~l~~~~~------------~~~~a~said~ALwDl~gk~~g~Pl~~LLG---g~~-~~ 132 (365)
T 3ik4_A 70 I-ERLQSHLLGADVRGWRKLAAMLDHAEH------------EAAAARCGLEMAMLDALTRHYHMPLHVFFG---GVS-KQ 132 (365)
T ss_dssp H-HHHGGGTTTCBGGGHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHHHHHHTTCBHHHHTT---CSC-SE
T ss_pred H-HHHHHHHcCCCccCHHHHHHHHHHHhc------------ccHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCC-Cc
Confidence 7 479999999999999999999983221 125799999999999999999999999999 865 56
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGL 230 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l 230 (445)
+|++. +++.+ + ++..++++.+...++|+++| .|+|. .+.+.+.+++
T Consensus 133 v~~~~--~~~~~-------~---------~e~~~~~a~~~~~~G~~~iK----~Kvg~------------~~~~~d~~~v 178 (365)
T 3ik4_A 133 LETDM--TITAG-------D---------EVHAAASAKAILARGIKSIK----VKTAG------------VDVAYDLARL 178 (365)
T ss_dssp EEBCE--EECCS-------C---------HHHHHHHHHHHHHTTCCCEE----EECCS------------SCHHHHHHHH
T ss_pred eeeeE--EecCC-------C---------HHHHHHHHHHHHHcCCCEEE----EEeCC------------CCHHHHHHHH
Confidence 77643 22211 1 12223444444444555543 44431 1123345555
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhh--ccCCeeeEECCCCcCC
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFI--SDYPIVSIEDPFDQDD 308 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l--~~~~i~~iEdP~~~~D 308 (445)
+++|+++ +++.|++|+ |+.||.++++++ .+.+ ++|++.|||||++++|
T Consensus 179 ~avr~~~------~~~~l~vDa-----------------------N~~~~~~~A~~~-~~~L~~~~~~i~~iEeP~~~~d 228 (365)
T 3ik4_A 179 RAIHQAA------PTAPLIVDG-----------------------NCGYDVERALAF-CAACKAESIPMVLFEQPLPRED 228 (365)
T ss_dssp HHHHHHS------SSCCEEEEC-----------------------TTCCCHHHHHHH-HHHHHHTTCCEEEEECCSCTTC
T ss_pred HHHHHhC------CCCeEEEEC-----------------------CCCCCHHHHHHH-HHHHhhCCCCceEEECCCCccc
Confidence 5554443 578999999 367899999987 4568 8899999999999999
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~ 388 (445)
++++++|+++++ +||++||+. .++++++++++.+++|++|||+++ ||||++++++++|+++|+++++++ +.|+.+
T Consensus 229 ~~~~~~l~~~~~--ipIa~dE~~-~~~~~~~~~i~~~a~d~v~ik~~~-GGit~~~~i~~~A~~~gi~~~~~~-~~es~i 303 (365)
T 3ik4_A 229 WAGMAQVTAQSG--FAVAADESA-RSAHDVLRIAREGTASVINIKLMK-AGVAEGLKMIAIAQAAGLGLMIGG-MVESIL 303 (365)
T ss_dssp HHHHHHHHHHSS--SCEEESTTC-SSHHHHHHHHHHTCCSEEEECHHH-HCHHHHHHHHHHHHHHTCEEEECC-SSCCHH
T ss_pred HHHHHHHHhhCC--CCEEECCCC-CCHHHHHHHHHhCCCCEEEEcCCc-cCHHHHHHHHHHHHHcCCeEEecC-CcccHH
Confidence 999999999998 999999985 679999999999999999999999 999999999999999999998766 568866
Q ss_pred h--HHHHHHhhhc
Q 043137 389 T--FIADLSVGLA 399 (445)
Q Consensus 389 ~--~~~~la~a~~ 399 (445)
+ +.+||+.+++
T Consensus 304 g~aa~~hlaaa~p 316 (365)
T 3ik4_A 304 AMSFSANLAAGNG 316 (365)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCC
Confidence 5 4556665543
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-47 Score=384.87 Aligned_cols=304 Identities=16% Similarity=0.166 Sum_probs=226.8
Q ss_pred eEEEEEEEEEEecCCCC----ceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhh
Q 043137 3 ITITAVKARQIFDSRGN----PTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPA 78 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~----~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~ 78 (445)
|||++|+++.+..+... ..++|+|+||+|++|||++.... + .+.|++++. .+++.++|.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~V~v~td~G~~G~GE~~~~~-~-----------~p~~~~e~~-----~i~~~l~p~ 63 (391)
T 3gd6_A 1 MKITDLELHAVGIPRHTGFVNKHVIVKIHTDEGLTGIGEMSDFS-H-----------LPLYSVDLH-----DLKQGLLSI 63 (391)
T ss_dssp CCEEEEEEEEEEEEBTTSCEEEEEEEEEEETTSCEEEEEECCCS-S-----------SSSCCCCHH-----HHHHHHHHH
T ss_pred CEEEEEEEEEEecccCCCcccceEEEEEEECCCCEEEecccccc-C-----------CCccchhHH-----HHHHHHHHH
Confidence 89999999988654332 46899999999999999753210 0 022545544 466789999
Q ss_pred hcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEe
Q 043137 79 LAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNV 158 (445)
Q Consensus 79 LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~ 158 (445)
|+|+||.+++++|+.|.+.+... .|++ .+ +.+|+|||||||||+.||.+|+|||+||| |..++++|++. +
T Consensus 64 liG~d~~~~~~~~~~l~~~~~~~--~~~~-~g--~~~A~said~ALwDl~gK~~g~Pl~~LLG---g~~r~~v~~y~--t 133 (391)
T 3gd6_A 64 LLGQNPFDLMKINKELTDNFPET--MYYY-EK--GSFIRNGIDNALHDLCAKYLDISVSDFLG---GRVKEKIKVCY--P 133 (391)
T ss_dssp HTTCCTTCHHHHHHHHHHHSCCC--SCTT-CH--HHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSCSEEEBCE--E
T ss_pred hCCCCccCHHHHHHHHHHHhhhc--cccc-Cc--chHHHHHHHHHHHHHHhcccCCcHHHHhC---CCcCCeEEeeE--E
Confidence 99999999999999998443211 1111 12 36899999999999999999999999999 98788888754 2
Q ss_pred ecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHH
Q 043137 159 INGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIA 238 (445)
Q Consensus 159 ~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~ 238 (445)
++..... .. ++..++++.+...++|+++| .|+|. +.+.+.++++++|+++
T Consensus 134 ~~~~~~~----~~--------~e~~~~~a~~~~~~G~~~~K----iKvG~-------------~~~~d~~~v~avR~a~- 183 (391)
T 3gd6_A 134 IFRHRFS----EE--------VESNLDVVRQKLEQGFDVFR----LYVGK-------------NLDADEEFLSRVKEEF- 183 (391)
T ss_dssp ECCCSST----TH--------HHHHHHHHHHHHHTTCCEEE----EECSS-------------CHHHHHHHHHHHHHHH-
T ss_pred ecccccC----CC--------HHHHHHHHHHHHHcCCCEEE----EeeCC-------------CHHHHHHHHHHHHHHc-
Confidence 3210000 00 12223444444444554443 34331 2234456666666555
Q ss_pred HhCCCCCeEEE-EeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCe--eeEECCCCcCCHHHHHHH
Q 043137 239 KAGYTGKVVIG-MDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPI--VSIEDPFDQDDWEHYAKL 315 (445)
Q Consensus 239 ~~g~~~~i~l~-vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i--~~iEdP~~~~D~~~~~~L 315 (445)
| +++.|+ +|+ |++||.++++++ .+.++++++ .|||||++++|++++++|
T Consensus 184 --g--~~~~l~~vDa-----------------------n~~~~~~~A~~~-~~~l~~~~i~~~~iEqP~~~~d~~~~~~l 235 (391)
T 3gd6_A 184 --G--SRVRIKSYDF-----------------------SHLLNWKDAHRA-IKRLTKYDLGLEMIESPAPRNDFDGLYQL 235 (391)
T ss_dssp --G--GGCEEEEEEC-----------------------TTCSCHHHHHHH-HHHHTTCCSSCCEEECCSCTTCHHHHHHH
T ss_pred --C--CCCcEEEecC-----------------------CCCcCHHHHHHH-HHHHHhcCCCcceecCCCChhhHHHHHHH
Confidence 5 589999 999 367899999987 567899999 999999999999999999
Q ss_pred HHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHH
Q 043137 316 TSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLS 395 (445)
Q Consensus 316 ~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la 395 (445)
+++++ +|| ||+ ++++++++++++.+++|++|+|++++||||++++++++|+++|++++++| +.|+.++.++.++
T Consensus 236 ~~~~~--iPI--dE~-~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~-~~es~i~~aa~~h 309 (391)
T 3gd6_A 236 RLKTD--YPI--SEH-VWSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKAAYAAEVASKDVVLGT-TQELSVGTAAMAH 309 (391)
T ss_dssp HHHCS--SCE--EEE-CCCHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECC-CCCCHHHHHHHHH
T ss_pred HHHcC--CCc--CCC-CCCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCEEEecC-CCccHHHHHHHHH
Confidence 99998 999 777 46799999999999999999999999999999999999999999998776 5688776555444
Q ss_pred hh
Q 043137 396 VG 397 (445)
Q Consensus 396 ~a 397 (445)
++
T Consensus 310 la 311 (391)
T 3gd6_A 310 LG 311 (391)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=388.44 Aligned_cols=321 Identities=14% Similarity=0.130 Sum_probs=221.2
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGK 82 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~ 82 (445)
||||+|+++.+. ..+..++|+|+||+|++|||++.. ++ ......+.+.++|.|+|+
T Consensus 1 MkIt~ie~~~~~--~~~~~~~V~v~td~G~~G~GE~~~-------------------~~---~~~~~~i~~~l~p~liG~ 56 (400)
T 4dxk_A 1 MKITKLETVRVA--ERTNLLWVLVHTDEGITGLGETFF-------------------GA---ETVETYVHEYIAPRVIGR 56 (400)
T ss_dssp CCEEEEEEEEET--TSTTEEEEEEEETTSCCEEEEEES-------------------CH---HHHHHHHHHTHHHHHTTS
T ss_pred CeEEEEEEEEEC--CCCCEEEEEEEECCCCEEEEcCCC-------------------Cc---cHHHHHHHHHHHHHhCCC
Confidence 899999998773 345679999999999999997321 11 222334556799999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEe-ecC
Q 043137 83 DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNV-ING 161 (445)
Q Consensus 83 d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~-~~g 161 (445)
||.+++++|+.|. .+ |+++.+++..+|+|||||||||+.||.+|+|||+||| |+.|+++|++.+.. +.|
T Consensus 57 dp~~~~~~~~~~~-~~------~~~~~~g~~~~A~saiD~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~yas~~~~~~ 126 (400)
T 4dxk_A 57 DPLQIDLLAQDLV-GY------LGFRSSGAEVRGNSAFDIALWDIFGKATNQPIAQLLG---GFSRREIRTYNTCAGTEY 126 (400)
T ss_dssp CTTCHHHHHHHHC-CS------SSCSSCSHHHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCSCSCEEEEBC------
T ss_pred CcchHHHHHHHHH-HH------hccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHhC---CCccCceeEEEecccccc
Confidence 9999999998883 32 2233445557899999999999999999999999999 98888899865321 111
Q ss_pred cccCCC--------Ccc-cceee--eccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCC--CccChHH
Q 043137 162 GSHAGN--------KLA-MQEFM--ILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAP--NIQENKE 228 (445)
Q Consensus 162 g~~~~~--------~~~-~~e~~--~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~--~~~~~~~ 228 (445)
..+... ... ..+.. -+..+++.++ +...++|+++| .|.|... ..++.+++.+ +++.+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~---~~~~~G~~~~K----ik~g~~~-~~~~~~g~~~~~~~~~d~~ 198 (400)
T 4dxk_A 127 IKKATGQQTANYGLSGGKDYDDLNGFLHRADELAH---SLLEDGITAMK----IWPFDAA-AEKTRGQYISMPDLKSALE 198 (400)
T ss_dssp ----------------------------CHHHHHH---HHHHTTCCEEE----ECTTHHH-HHHHTTSCCCHHHHHHHHH
T ss_pred cccccccccccccccccccchhcccccccHHHHHH---HHHHhCCCEEE----EcCCCcc-ccccccCcCCHHHHHHHHH
Confidence 000000 000 00000 0000111122 22233455543 2322000 0000011111 1223345
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCC
Q 043137 229 GLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDD 308 (445)
Q Consensus 229 ~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D 308 (445)
+++++|+++ | +++.|++|+ |++||.++++++ .+.++++++.|||||++++|
T Consensus 199 ~v~avR~a~---g--~~~~l~vDa-----------------------N~~~~~~~A~~~-~~~L~~~~i~~iEeP~~~~~ 249 (400)
T 4dxk_A 199 PFEKIRKAV---G--DKMDIMVEF-----------------------HSMWQLLPAMQI-AKALTPYQTFWHEDPIKMDS 249 (400)
T ss_dssp HHHHHHHHH---G--GGSEEEEEC-----------------------TTCBCHHHHHHH-HHHTGGGCCSEEECCBCTTS
T ss_pred HHHHHHHHc---C--CCceEEEEC-----------------------CCCCCHHHHHHH-HHHHhhcCCCEEEcCCCccc
Confidence 555555554 5 589999999 367899999987 56789999999999999999
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~ 388 (445)
++++++|+++++ +||++||+. +++++++++++.+++|++|+|++++||||++++++++|+++|+++++ |++. +.+
T Consensus 250 ~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~l~~~a~d~v~~d~~~~GGit~~~kia~~A~~~gi~~~~-h~~~-s~i 324 (400)
T 4dxk_A 250 LSSLTRYAAVSP--APISASETL-GSRWAFRDLLETGAAGVVMLDISWCGGLSEARKIASMAEAWHLPVAP-HXCT-GPV 324 (400)
T ss_dssp GGGHHHHHHHCS--SCEEECTTC-CHHHHHHHHHHTTCCCEEEECTTTTTHHHHHHHHHHHHHHTTCCEEE-C-CC-CHH
T ss_pred HHHHHHHHHhCC--CCEEecCCc-CCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEe-cCCC-ChH
Confidence 999999999998 999999985 66999999999999999999999999999999999999999999865 4343 555
Q ss_pred h--HHHHHHhhhc
Q 043137 389 T--FIADLSVGLA 399 (445)
Q Consensus 389 ~--~~~~la~a~~ 399 (445)
+ +.+||+.++.
T Consensus 325 ~~aa~~hlaaa~p 337 (400)
T 4dxk_A 325 VLCASTHLSLNAP 337 (400)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCC
Confidence 4 5556666544
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-47 Score=388.41 Aligned_cols=315 Identities=13% Similarity=0.153 Sum_probs=223.7
Q ss_pred ceEEEEEEEEEEecC-------CC-----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHH
Q 043137 2 AITITAVKARQIFDS-------RG-----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVS 69 (445)
Q Consensus 2 ~mkI~~v~~~~v~~~-------~g-----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~ 69 (445)
.||||+|+++.+..+ .| ...++|+|+||+|++|+|+++. + .....
T Consensus 27 ~mkIt~i~~~~v~~p~~p~~~~~g~~~~~~~~~~V~v~td~G~~G~GE~~g--------------------~---~~~~~ 83 (445)
T 3vdg_A 27 RIRITGARVTPVAFADPPLLNTVGVHQPYALRAVIQLDTDAGLTGLGETYA--------------------D---TVHLE 83 (445)
T ss_dssp CCBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCEEEEEECC--------------------C---HHHHH
T ss_pred CCEEEEEEEEEEecCCccccccccccccceeEEEEEEEECCCCeEEEeCCC--------------------h---HHHHH
Confidence 589999999988532 11 2347899999999999997642 1 12233
Q ss_pred HHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccc------cchhhHHHHHHHHHHHHHHhcCCchhhhhccc
Q 043137 70 NVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQK------LGANAILAVSLAVCKAGAHVKKIPLYKHIAEL 143 (445)
Q Consensus 70 ~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~------~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~ 143 (445)
.| +.++|.|+|+||.+++++|+.|++.+.+....-.+|..+ +...|++|||+||||+.||.+|+|||+|||
T Consensus 84 ~i-~~l~p~LiG~d~~~ie~i~~~l~~~~~~~~~~~~~g~~G~~~~~~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLG-- 160 (445)
T 3vdg_A 84 RL-QAAAHAIVGRSVFSTNVIRALISDALGGDRTGDGSGLAGMITSASVVDRVFSPFEVACLDVQGQVTGRPVSDLLG-- 160 (445)
T ss_dssp HH-HHHHHHHTTCBTTCHHHHHHHHHHHHTSCCCSCCTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHTCBGGGGTT--
T ss_pred HH-HHHHHHhCCCChhhHHHHHHHHHHhhhcccccccccccCccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhC--
Confidence 45 469999999999999999999995442210000011112 345799999999999999999999999999
Q ss_pred cCCCcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHH-HHHHHHHHHHhhcCCCCcccCCCCCCCCC
Q 043137 144 SGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVE-VYHHLKAVIKKKYGQDATNVGDEGGFAPN 222 (445)
Q Consensus 144 ~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~-~~~~~k~~lk~k~G~~~~~~~~~g~~~~~ 222 (445)
|..++++|++.|.......+ ++. .......+..+++.++++.+...+ +|+++| .|.|. .+
T Consensus 161 -G~~r~~v~~~a~~~~~~~~~-~g~-~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~K----lKvG~------------~~ 221 (445)
T 3vdg_A 161 -GAVRDAVPFSAYLFYKWAAH-PGA-EPDGWGAALDPDGIVAQARRMIDEYGFSAIK----LKGGV------------FA 221 (445)
T ss_dssp -CCSSSEEEBCEEEECBCSSS-TTS-CCCSSCCBCSHHHHHHHHHHHHHHHCCSSEE----EECSS------------SC
T ss_pred -CCCCCeEEEeeeeccccccc-CCc-cccccccCCCHHHHHHHHHHHHHhcCCCEEE----ECCCC------------CC
Confidence 98888899866542110000 000 000000001122334445444432 565543 34331 11
Q ss_pred ccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEEC
Q 043137 223 IQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIED 302 (445)
Q Consensus 223 ~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEd 302 (445)
.+.+.++++++|+++ +++.|++|+ |+.||.++++++ .+.++++ +.||||
T Consensus 222 ~~~Di~~v~avRea~------~d~~L~vDa-----------------------N~~w~~~~Ai~~-~~~L~~~-l~~iEe 270 (445)
T 3vdg_A 222 PEEEMAAVEALRAAF------PDHPLRLDP-----------------------NAAWTPQTSVKV-AAGLEGV-LEYLED 270 (445)
T ss_dssp HHHHHHHHHHHHHHC------TTSCEEEEC-----------------------TTCSCHHHHHHH-HHHTTTT-CSEEEC
T ss_pred HHHHHHHHHHHHHhC------CCCcEEEEC-----------------------CCCCCHHHHHHH-HHHHhhH-HHeeeC
Confidence 233445555454443 589999999 468999999988 4568999 999999
Q ss_pred CCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC
Q 043137 303 PFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 303 P~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~ 382 (445)
|++ |++++++|+++++ +||++||+. +++++++++++.+++|++|+|++++||||++++++++|+++|++++ +|.
T Consensus 271 P~~--~~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~l~~~a~div~~d~~~~GGitea~kia~lA~~~gv~v~-~h~ 344 (445)
T 3vdg_A 271 PTP--GLDGMAEVAAQAP--MPLATNMCV-VAFDQLPAAVAKNSVQVVLSDHHYWGGLQRSRLLAGICDTFGLGLS-MHS 344 (445)
T ss_dssp CSS--SHHHHHHHHHHCS--SCEEESSSC-CSGGGHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEE-ECC
T ss_pred CCC--CHHHHHHHHhcCC--CCEEcCCcC-CCHHHHHHHHHcCCCCEEeeCcceeCCHHHHHHHHHHHHHcCCEEE-EeC
Confidence 995 8999999999998 999999985 6799999999999999999999999999999999999999999975 465
Q ss_pred CCCChhhH--HHHHHhhh
Q 043137 383 SGETEDTF--IADLSVGL 398 (445)
Q Consensus 383 ~~et~~~~--~~~la~a~ 398 (445)
+.|+.++. .+||++++
T Consensus 345 ~~e~~i~~aa~~hlaaa~ 362 (445)
T 3vdg_A 345 NSHLGISLAAMVHLAAAT 362 (445)
T ss_dssp CSCCHHHHHHHHHHHHTC
T ss_pred CcchHHHHHHHHHHHHhC
Confidence 67777664 45666554
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=391.98 Aligned_cols=307 Identities=18% Similarity=0.194 Sum_probs=222.6
Q ss_pred ceEEEEEEEEEEecCC----------C----CceEEEEEEeCC--CceEEEeccCCCccccccceeeccCCCCCCCccHH
Q 043137 2 AITITAVKARQIFDSR----------G----NPTVEVDVTTSD--GHVARAAVPSGASTGIYEALELRDGGSDYLGKGVS 65 (445)
Q Consensus 2 ~mkI~~v~~~~v~~~~----------g----~~~v~V~v~td~--G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~ 65 (445)
.|||++|+++.+..+. . ...++|+|+||+ |++|+|++... +.+..
T Consensus 4 ~mkI~~i~~~~v~~p~~~~~~~s~~~~~~~~~~~~~V~i~Td~~dG~~G~Ge~~~~-------------------g~~~~ 64 (441)
T 4a35_A 4 RGRISRLSVRDVRFPTSLGGHGADAMHTDPDYSAAYVVIETDAEDGIKGCGITFTL-------------------GKGTE 64 (441)
T ss_dssp CCBEEEEEEEEEECCGGGTTCCCCSSCSSCCCEEEEEEEEESSCSCCCEEEEEEEC-------------------STTHH
T ss_pred CCEEEEEEEEEEEecCCCCCCCccceeccCcceEEEEEEEECCCCCCEEEEeeeCC-------------------CCChH
Confidence 3799999999885321 1 236899999998 99999975431 11123
Q ss_pred HHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccc-cc-cccchhhHHHHHHHHHHHHHHhcCCchhhhhccc
Q 043137 66 KAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGW-CK-QKLGANAILAVSLAVCKAGAHVKKIPLYKHIAEL 143 (445)
Q Consensus 66 ~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~-~~-~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~ 143 (445)
.+...+ +.++|.|+|+||.+++++|+.+++.+.... .+.| |. +++...|+||||+||||++||.+|+|||+|||
T Consensus 65 ~~~~~i-~~l~~~liG~d~~~i~~~~~~~~~~l~~~~-~~~~~g~~~g~~~~A~saID~ALwDl~gK~~g~Pv~~LLG-- 140 (441)
T 4a35_A 65 VVVCAV-NALAHHVLNKDLKDIVGDFRGFYRQLTSDG-QLRWIGPEKGVVHLATAAVLNAVWDLWAKQEGKPVWKLLV-- 140 (441)
T ss_dssp HHHHHH-HHHGGGTTTCBHHHHHTTHHHHHHHHHSCT-TGGGGCSSSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHH--
T ss_pred HHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHhhcc-ceeecCCCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHhC--
Confidence 444445 569999999999999877777765443211 1222 21 23446899999999999999999999999999
Q ss_pred cCCCcceee---------------------------------------eeeEEeecCcccCCCCcccceeeeccCChhcH
Q 043137 144 SGNKNLVLP---------------------------------------VPAFNVINGGSHAGNKLAMQEFMILPVGASCF 184 (445)
Q Consensus 144 ~G~~~~~vp---------------------------------------~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~ 184 (445)
|..+++++ +|+|++. +|+.. .+ ++...
T Consensus 141 -G~~r~~i~~~~~~~y~~d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~y~~~-~g~~~---~~---------~e~~~ 206 (441)
T 4a35_A 141 -DMDPRMLVSCIDFRYITDVLTEEDALEILQKGQIGKKEREKQMLAQGYPAYTTS-CAWLG---YS---------DDTLK 206 (441)
T ss_dssp -HSCHHHHHTTCCCTTTTTTCCHHHHHHHHHHTTTTHHHHHHHHHHHCEEEEECT-TCCTT---CC---------HHHHH
T ss_pred -CCCcccceecccccccccccchhhhhhhhhhcccccchhhhhhcccCcceEEec-cccCC---CC---------HHHHH
Confidence 87655543 3455542 22211 01 11223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCcee
Q 043137 185 KEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTY 264 (445)
Q Consensus 185 ~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y 264 (445)
+++.+...++|+++| .|.|. +.+.+.++++++|+++ | +++.|++|+
T Consensus 207 ~~a~~~~~~Gf~~~K----lKvG~-------------~~~~d~~~v~avR~a~---G--~~~~l~vDa------------ 252 (441)
T 4a35_A 207 QLCAQALKDGWTRFK----VKVGA-------------DLQDDMRRCQIIRDMI---G--PEKTLMMDA------------ 252 (441)
T ss_dssp HHHHHHHHTTCCEEE----EECSS-------------CHHHHHHHHHHHHHHH---C--TTSEEEEEC------------
T ss_pred HHHHHHHHCCCCEEE----EcCCC-------------CHHHHHHHHHHHHHHh---C--CCCeEEEEC------------
Confidence 344444444555543 34331 2334455666666555 6 589999999
Q ss_pred eecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHH---hCCCceEEeCcccccCHHHHHHH
Q 043137 265 DLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSE---VGEKVQIVGDDLLVTNPKRVEKA 341 (445)
Q Consensus 265 ~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~---~~~~vpI~gde~~~~~~~~~~~~ 341 (445)
|+.||.++++++ .+.++++++.|||||++++|++++++|+++ ++ +||++||+. .++++++++
T Consensus 253 -----------N~~~~~~~A~~~-~~~L~~~~~~~iEeP~~~~d~~~~~~l~~~l~~~~--iPIa~gE~~-~~~~~~~~~ 317 (441)
T 4a35_A 253 -----------NQRWDVPEAVEW-MSKLAKFKPLWIEEPTSPDDILGHATISKALVPLG--IGIATGEQC-HNRVIFKQL 317 (441)
T ss_dssp -----------TTCCCHHHHHHH-HHHHGGGCCSEEECCSCTTCHHHHHHHHHHHGGGT--CEEEECTTC-CSHHHHHHH
T ss_pred -----------CCCCCHHHHHHH-HHhhcccCccEEeCCCCcccHHHHHHHHHhccCCC--CCEEeCCcc-ccHHHHHHH
Confidence 367899999988 556899999999999999999999999998 66 999999985 679999999
Q ss_pred HhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH-HHHHHh
Q 043137 342 IKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF-IADLSV 396 (445)
Q Consensus 342 i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~-~~~la~ 396 (445)
++.+++|++|+|++++||||++++++++|+++|+++ .+|.+ ..+.++ .+||++
T Consensus 318 l~~~a~div~~d~~~~GGit~~~kia~lA~~~gv~v-~~H~~-~ig~aa~~~hl~~ 371 (441)
T 4a35_A 318 LQAKALQFLQIDSCRLGSVNENLSVLLMAKKFEIPV-CPHAG-GVGLCELVQHLII 371 (441)
T ss_dssp HHTTCCSEECCCTTTSSHHHHHHHHHHHHHHTTCCB-CCCCC-TTTHHHHHHHHHH
T ss_pred HHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCEE-EEeCC-hHHHHHHHHHHhh
Confidence 999999999999999999999999999999999997 66743 333332 346653
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=384.97 Aligned_cols=297 Identities=18% Similarity=0.224 Sum_probs=229.2
Q ss_pred eEEEEEEEEEEecC--------CC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFDS--------RG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~~--------~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+..+ .+ +..++|+|+||+|++|||++...+ .|++++...+.+.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~---------------~~~~e~~~~~~~~ 65 (356)
T 3ro6_B 1 MKIADIQVRTEHFPLTRPYRIAFRSIEEIDNLIVEIRTADGLLGLGAASPER---------------HVTGETLEACHAA 65 (356)
T ss_dssp CBEEEEEEEEEEEEBC----------CEEEEEEEEEEETTSCEEEEEECCCH---------------HHHCCCHHHHHHH
T ss_pred CEEEEEEEEEEEecccCCEEecCeEEEeeeEEEEEEEECCCCEEEecccCCC---------------CcCcCCHHHHHHH
Confidence 89999999887432 22 246899999999999999754321 1445666777777
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
+++.+.|.|+|+||.+++++|+.|++.+.+ ..+|++|||+||||+.||.+|+|||+||| |. +++
T Consensus 66 l~~~l~~~l~G~~~~~~~~~~~~l~~~~~~------------~~~a~~aid~AlwDl~gk~~g~Pl~~llG---g~-~~~ 129 (356)
T 3ro6_B 66 LDHDRLGWLMGRDIRTLPRLCRELAERLPA------------APAARAALDMALHDLVAQCLGLPLVEILG---RA-HDS 129 (356)
T ss_dssp HCGGGCTTTTTCBGGGHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHHHHHHTSBHHHHTC---CC-CSC
T ss_pred HHHHhHHHhcCCCccCHHHHHHHHHHhhcc------------chhHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-CCc
Confidence 888899999999999999999999843221 25799999999999999999999999999 86 566
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGL 230 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l 230 (445)
+|++. .++.+ + ++...+++.+...++|+.+| .|+|. +.+.+.+++
T Consensus 130 v~~~~--~~~~~-------~---------~~~~~~~a~~~~~~G~~~~K----~K~G~-------------~~~~d~~~v 174 (356)
T 3ro6_B 130 LPTSV--TIGIK-------P---------VEETLAEAREHLALGFRVLK----VKLCG-------------DEEQDFERL 174 (356)
T ss_dssp EEBCE--EECSC-------C---------HHHHHHHHHHHHHTTCCEEE----EECCS-------------CHHHHHHHH
T ss_pred eeeeE--EEcCC-------C---------HHHHHHHHHHHHHcCCCEEE----EEeCC-------------CHHHHHHHH
Confidence 77643 22211 0 12233444444444555443 34331 223445566
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHH
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWE 310 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~ 310 (445)
+++|+++ | +++.|++|+ |++|+.++++++ .+.++++++.|||||++++|++
T Consensus 175 ~avR~~~---g--~~~~l~vDa-----------------------n~~~~~~~a~~~-~~~l~~~~i~~iEqP~~~~d~~ 225 (356)
T 3ro6_B 175 RRLHETL---A--GRAVVRVDP-----------------------NQSYDRDGLLRL-DRLVQELGIEFIEQPFPAGRTD 225 (356)
T ss_dssp HHHHHHH---T--TSSEEEEEC-----------------------TTCCCHHHHHHH-HHHHHHTTCCCEECCSCTTCHH
T ss_pred HHHHHHh---C--CCCEEEEeC-----------------------CCCCCHHHHHHH-HHHHHhcCCCEEECCCCCCcHH
Confidence 6555554 5 589999999 367899999987 5668999999999999999999
Q ss_pred HHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcC-CCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 311 HYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEK-TCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 311 ~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~-a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
++++|+++++ +||++||+. .++++++++++.+ ++|++|||++++||||++++++++|+++|+++++++ +.|+..+
T Consensus 226 ~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~-~~es~i~ 301 (356)
T 3ro6_B 226 WLRALPKAIR--RRIAADESL-LGPADAFALAAPPAACGIFNIKLMKCGGLAPARRIATIAETAGIDLMWGC-MDESRIS 301 (356)
T ss_dssp HHHTSCHHHH--HTEEESTTC-CSHHHHHHHHSSSCSCSEEEECHHHHCSHHHHHHHHHHHHHHTCEEEECC-CSCCHHH
T ss_pred HHHHHHhcCC--CCEEeCCcC-CCHHHHHHHHhcCCcCCEEEEcccccCCHHHHHHHHHHHHHcCCEEEecC-CcccHHH
Confidence 9999999998 999999985 6799999999999 999999999999999999999999999999998866 5788766
Q ss_pred H--HHHHHhhh
Q 043137 390 F--IADLSVGL 398 (445)
Q Consensus 390 ~--~~~la~a~ 398 (445)
. .+||+.++
T Consensus 302 ~aa~~hlaaa~ 312 (356)
T 3ro6_B 302 IAAALHAALAC 312 (356)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhcC
Confidence 4 45555544
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-47 Score=383.22 Aligned_cols=304 Identities=18% Similarity=0.171 Sum_probs=224.4
Q ss_pred eEEEEEEEEEEecCC---------C----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHH
Q 043137 3 ITITAVKARQIFDSR---------G----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVS 69 (445)
Q Consensus 3 mkI~~v~~~~v~~~~---------g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~ 69 (445)
|||++|+++.+..+. + ...++|+|+||+|++|||++..... . .+..++..
T Consensus 1 MkI~~i~~~~~~~Pl~~p~~~~a~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~---------------~--~~~~~~~~ 63 (372)
T 3tj4_A 1 MKITAVEPFILHLPLTSESISDSTHSITHWGVVGAKITTSDGIEGYGFTGTHAH---------------L--PSDRLITS 63 (372)
T ss_dssp CBEEEEEEEEEEEECC------------EEEEEEEEEEETTSCEEEEEEEECCC---------------H--HHHHHHHH
T ss_pred CEEEEEEEEEEEecCCCCccCCCccccCceeEEEEEEEECCCCEEEEeccCccc---------------c--CcHHHHHH
Confidence 899999998874321 1 2458999999999999996543110 0 01234455
Q ss_pred HHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCccccccc--ccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCC
Q 043137 70 NVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQ--KLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNK 147 (445)
Q Consensus 70 ~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~--~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~ 147 (445)
.|++.++|.|+|+||.+++++|+.|++... | .+++ ++..+|++|||+||||+.||.+|+|||+||| |..
T Consensus 64 ~i~~~l~p~liG~d~~~~~~~~~~l~~~~~-----~-~~~g~~g~~~~A~said~AlwDl~gk~~g~Pv~~llG---g~~ 134 (372)
T 3tj4_A 64 CISDCYAPLLLGEDASDHSRLWTKLARYPS-----L-QWVGRAGITHLALAAVDVALWDIKAKKAGVPLWHYLG---GAR 134 (372)
T ss_dssp HHHHTTHHHHTTSBTTCHHHHHHHHHTCHH-----H-HTTCSSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCS
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHhhH-----h-hcCCcccHHHHHHHHHHHHHHHHhccccCCcHHHHcC---CCC
Confidence 677789999999999999999999983211 0 0112 4456899999999999999999999999999 977
Q ss_pred cceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHH-HHHHHHHHHHhhcCCCCcccCCCCCCCCCccCh
Q 043137 148 NLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVE-VYHHLKAVIKKKYGQDATNVGDEGGFAPNIQEN 226 (445)
Q Consensus 148 ~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~-~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~ 226 (445)
++++|+ |+++ +|+.. .+ +++.++++.+...+ +|+++| .|+|. ++.+.+
T Consensus 135 ~~~v~~--y~s~-~~~~~---~~---------~~~~~~~a~~~~~~~G~~~~K----~Kvg~------------~~~~~d 183 (372)
T 3tj4_A 135 TAGVEA--YNTD-IGWLS---FT---------LEDLLAGSARAVEEDGFTRLK----IKVGH------------DDPNID 183 (372)
T ss_dssp CSCEEE--EECT-TCCTT---SC---------HHHHHHHHHHHHHTTCCCEEE----EECCC------------SSHHHH
T ss_pred CCCeEE--EEec-CCccC---CC---------HHHHHHHHHHHHHccCCCEEE----EcCCC------------CCHHHH
Confidence 666776 4432 22210 01 12234444444444 555543 44431 122334
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCc
Q 043137 227 KEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQ 306 (445)
Q Consensus 227 ~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~ 306 (445)
.+.++++|++ +| +++.|++|+ |++||.++++++ .+.++++++.|||||+++
T Consensus 184 ~~~v~avR~~---~g--~~~~l~vDa-----------------------n~~~~~~~a~~~-~~~l~~~~i~~iEqP~~~ 234 (372)
T 3tj4_A 184 IARLTAVRER---VD--SAVRIAIDG-----------------------NGKWDLPTCQRF-CAAAKDLDIYWFEEPLWY 234 (372)
T ss_dssp HHHHHHHHHH---SC--TTCEEEEEC-----------------------TTCCCHHHHHHH-HHHTTTSCEEEEESCSCT
T ss_pred HHHHHHHHHH---cC--CCCcEEeeC-----------------------CCCCCHHHHHHH-HHHHhhcCCCEEECCCCc
Confidence 5555555444 35 589999999 367899999987 456899999999999999
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC-CCC
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHR-SGE 385 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~-~~e 385 (445)
+|++++++|+++++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|+++++++. +.+
T Consensus 235 ~d~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~g~~~~ 311 (372)
T 3tj4_A 235 DDVTSHARLARNTS--IPIALGEQL-YTVDAFRSFIDAGAVAYVQPDVTRLGGITEYIQVADLALAHRLPVVPHAGEMSQ 311 (372)
T ss_dssp TCHHHHHHHHHHCS--SCEEECTTC-CSHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHTTCCBCCCCTTTTT
T ss_pred hhHHHHHHHHhhcC--CCEEeCCCc-cCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCchHHH
Confidence 99999999999998 999999985 67999999999999999999999999999999999999999999865441 223
Q ss_pred ChhhHHHHHHhhhc
Q 043137 386 TEDTFIADLSVGLA 399 (445)
Q Consensus 386 t~~~~~~~la~a~~ 399 (445)
+.+|++.++.
T Consensus 312 ----~~~~l~aa~~ 321 (372)
T 3tj4_A 312 ----VHVHLSYWHP 321 (372)
T ss_dssp ----THHHHHHHCT
T ss_pred ----HHHHHhhhCC
Confidence 3578877764
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-47 Score=382.27 Aligned_cols=300 Identities=19% Similarity=0.266 Sum_probs=228.2
Q ss_pred eEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+.. +.+ +..++|+|+||+|++|||++...+ .|++++...+...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~---------------~~~~e~~~~~~~~ 65 (368)
T 3q45_A 1 MIITQVELYKSPVKLKEPFKISLGILTHANNVIVRIHTASGHIGYGECSPFM---------------TIHGESMDTAFIV 65 (368)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTCCEEEEEECCCH---------------HHHSCCHHHHHHH
T ss_pred CEEEEEEEEEEEeecCCCEEccCceEeeeeEEEEEEEECCCCEEEeeccCCC---------------CcCCCCHHHHHHH
Confidence 8999999987742 222 356899999999999999754311 1345556666655
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
+ +.++|.|+|+||.+++++|+.|++.+.+ ..+|++|||+||||+.||.+|+|||+||| |.. .+
T Consensus 66 ~-~~l~~~l~G~d~~~~~~~~~~l~~~~~~------------~~~a~~aid~AlwDl~gk~~g~Pl~~llG---g~~-~~ 128 (368)
T 3q45_A 66 G-QYLAKGLIGTSCLDIVSNSLLMDAIIYG------------NSCIKSAFNIALYDLAAQHAGLPLYAFLG---GKK-DK 128 (368)
T ss_dssp H-HHHHHHHTTSBTTCHHHHHHHHHHHCSC------------CHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCC-CS
T ss_pred H-HHHHHHhcCCChhhHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCC-Ce
Confidence 6 4799999999999999999999843211 15799999999999999999999999999 874 45
Q ss_pred e-eeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHH
Q 043137 151 L-PVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEG 229 (445)
Q Consensus 151 v-p~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~ 229 (445)
+ |++. .++.+ .++...+++.+...++|+++| .|+|. +.+.+.++
T Consensus 129 v~~~~~--~~~~~----------------~~e~~~~~a~~~~~~G~~~~K----~KvG~-------------~~~~d~~~ 173 (368)
T 3q45_A 129 IIQTDY--TVSID----------------EPHKMAADAVQIKKNGFEIIK----VKVGG-------------SKELDVER 173 (368)
T ss_dssp CEEBCE--EECSC----------------CHHHHHHHHHHHHHTTCSEEE----EECCS-------------CHHHHHHH
T ss_pred eeeeEE--EecCC----------------CHHHHHHHHHHHHHcCCCeEE----EEecC-------------CHHHHHHH
Confidence 6 5532 22111 112234445444444565543 44431 12334556
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCH
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDW 309 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~ 309 (445)
++++|+++ | +++.|++|+ |++||.++++++ .+.++++++.|||||++++|+
T Consensus 174 v~avR~~~---g--~~~~l~vDa-----------------------N~~~~~~~A~~~-~~~l~~~~i~~iEqP~~~~~~ 224 (368)
T 3q45_A 174 IRMIREAA---G--DSITLRIDA-----------------------NQGWSVETAIET-LTLLEPYNIQHCEEPVSRNLY 224 (368)
T ss_dssp HHHHHHHH---C--SSSEEEEEC-----------------------TTCBCHHHHHHH-HHHHGGGCCSCEECCBCGGGG
T ss_pred HHHHHHHh---C--CCCeEEEEC-----------------------CCCCChHHHHHH-HHHHhhcCCCEEECCCChhHH
Confidence 66555554 5 589999999 367899999987 556899999999999999999
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+++++|+++++ +||++||+. +++++++++++.+++|++|||++++||||++++++++|+++|++++++| +.|+..+
T Consensus 225 ~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~-~~es~i~ 300 (368)
T 3q45_A 225 TALPKIRQACR--IPIMADESC-CNSFDAERLIQIQACDSFNLKLSKSAGITNALNIIRLAEQAHMPVQVGG-FLESRLG 300 (368)
T ss_dssp GGHHHHHHTCS--SCEEESTTC-CSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECC-SSCCHHH
T ss_pred HHHHHHHhhCC--CCEEEcCCc-CCHHHHHHHHHcCCCCeEEechhhcCCHHHHHHHHHHHHHcCCcEEecC-ccccHHH
Confidence 99999999998 999999985 6799999999999999999999999999999999999999999998876 4688776
Q ss_pred HHHHHHhhhcCCc
Q 043137 390 FIADLSVGLATGQ 402 (445)
Q Consensus 390 ~~~~la~a~~~~~ 402 (445)
.++.++++...+.
T Consensus 301 ~aa~~hlaaa~p~ 313 (368)
T 3q45_A 301 FTAAAHVALVSKT 313 (368)
T ss_dssp HHHHHHHHTTCTT
T ss_pred HHHHHHHHHcCCC
Confidence 5554444433333
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=380.38 Aligned_cols=299 Identities=14% Similarity=0.131 Sum_probs=225.4
Q ss_pred ceEEEEEEEEEEecCC---------C----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHH
Q 043137 2 AITITAVKARQIFDSR---------G----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAV 68 (445)
Q Consensus 2 ~mkI~~v~~~~v~~~~---------g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~ 68 (445)
.|||++|+++.+..+. + +..++|+|+||+|++|||++... ++.|+.++...+.
T Consensus 22 ~MkI~~i~~~~~~~pl~~~p~~~s~g~~~~~~~~~V~i~td~G~~G~GE~~~~--------------~~~~~~~~~~~~~ 87 (391)
T 4e8g_A 22 SMKIAEIHVYAHDLPVKDGPYTIASSTVWSLQTTLVKIVADSGLAGWGETCPV--------------GPTYAPSHALGAR 87 (391)
T ss_dssp -CCEEEEEEEEEEC---------------CCEEEEEEEEETTSCEEEEEECCS--------------STTTSSCCHHHHH
T ss_pred CCEEEEEEEEEEeeeCCCCCcccccceeeeeeEEEEEEEECCCCEEEecCcCC--------------CCccCCccHHHHH
Confidence 4999999998885432 1 34689999999999999965321 0124444556666
Q ss_pred HHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCc
Q 043137 69 SNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKN 148 (445)
Q Consensus 69 ~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~ 148 (445)
..+++ +.|.|+|+||.+++.+|+.|.+.+. + ..+|++|||+||||+.||.+|+|||+||| |..+
T Consensus 88 ~~l~~-l~p~l~G~d~~~~~~~~~~l~~~~~----------g--~~~A~said~ALwDl~gK~~g~Pl~~LLG---g~~r 151 (391)
T 4e8g_A 88 AALAE-MAPGLIGANPLQPLVLRRRMDGLLC----------G--HNYAKAAIDIAAYDLMGKHYGVRVADLLG---GVAA 151 (391)
T ss_dssp HHHHH-HGGGGTTCCTTCHHHHHHHHHTTCS----------S--CHHHHHHHHHHHHHHHHHHHTCBGGGGTT---CCSC
T ss_pred HHHHH-HHHHHCCCCcCCHHHHHHHHHHHhc----------C--cHHHHHHHHHHHHHHHHHHcCChHHHhcC---CCCC
Confidence 66765 9999999999999999999983211 1 15799999999999999999999999999 9877
Q ss_pred ceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHH
Q 043137 149 LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKE 228 (445)
Q Consensus 149 ~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~ 228 (445)
+++|++.. ++.+ + ++...+++.+...++|+.+| .|+|. .+.+.+.+
T Consensus 152 ~~v~~y~s--~~~~-------~---------~e~~~~~a~~~~~~G~~~~K----lKvg~------------~~~~~d~~ 197 (391)
T 4e8g_A 152 ERVPSYYA--TGIG-------Q---------PDEIARIAAEKVAEGFPRLQ----IKIGG------------RPVEIDIE 197 (391)
T ss_dssp SEEECCEE--ECSC-------C---------HHHHHHHHHHHHHTTCSEEE----EECCS------------SCHHHHHH
T ss_pred CcEEEeEE--cCCC-------C---------HHHHHHHHHHHHHcCCcEEE----EcCCC------------CCHHHHHH
Confidence 88888543 2211 1 12223444444444565543 44431 12233455
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCC
Q 043137 229 GLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDD 308 (445)
Q Consensus 229 ~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D 308 (445)
+++++|+++ |- +++.|++|+ |+.||.++++++ .+.++++++ |||||+ +|
T Consensus 198 ~v~avR~a~---gg-~~~~L~vDa-----------------------N~~w~~~~A~~~-~~~L~~~~i-~iEeP~--~~ 246 (391)
T 4e8g_A 198 TVRKVWERI---RG-TGTRLAVDG-----------------------NRSLPSRDALRL-SRECPEIPF-VLEQPC--NT 246 (391)
T ss_dssp HHHHHHHHH---TT-TTCEEEEEC-----------------------TTCCCHHHHHHH-HHHCTTSCE-EEESCS--SS
T ss_pred HHHHHHHHh---CC-CCCeEEEeC-----------------------CCCCCHHHHHHH-HHHHhhcCe-EEecCC--cc
Confidence 555555544 40 379999999 367899999987 456899999 999995 58
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~ 388 (445)
++++++|+++++ +||++||+. .++++++++++.+++|++|||++++||||++++++++|+++|++++++| +.|+.+
T Consensus 247 ~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~~~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~-~~es~i 322 (391)
T 4e8g_A 247 LEEIAAIRGRVQ--HGIYLDESG-EDLSTVIRAAGQGLCDGFGMKLTRIGGLQQMAAFRDICEARALPHSCDD-AWGGDI 322 (391)
T ss_dssp HHHHHHHGGGCC--SCEEESTTC-CSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCCEEEEC-SSCSHH
T ss_pred HHHHHHHHhhCC--CCEEeCCCC-CCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEeCC-cCCCHH
Confidence 999999999998 999999985 5699999999999999999999999999999999999999999998887 467877
Q ss_pred hHH--HHHHhhhc
Q 043137 389 TFI--ADLSVGLA 399 (445)
Q Consensus 389 ~~~--~~la~a~~ 399 (445)
+.. +||+.++.
T Consensus 323 ~~aa~~hlaaa~p 335 (391)
T 4e8g_A 323 IAAACTHIGATVQ 335 (391)
T ss_dssp HHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhCC
Confidence 654 55555543
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-46 Score=383.14 Aligned_cols=321 Identities=15% Similarity=0.109 Sum_probs=225.2
Q ss_pred CceEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhc
Q 043137 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALA 80 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~Li 80 (445)
|.||||+|++..+. ...++.++|+|+||+|++|||++... |+.+++. ..+ +.|+|.|+
T Consensus 1 ~~MkI~~i~~~~~~-~~~~~~~~V~v~td~G~~G~GE~~~~-----------------~~~~~~~---~~i-~~l~p~li 58 (409)
T 3go2_A 1 MSLKVVSVDTLCCD-AGWRNYHFVKLTTDEGIVGWSEFDEG-----------------FGSPGVT---AVI-EQLGKRLV 58 (409)
T ss_dssp -CCBEEEEEEEEEE-CSSSEEEEEEEEETTCCEEEEEECST-----------------TTCTTHH---HHH-HHHHHHHT
T ss_pred CCCEEEEEEEEEEC-CCCccEEEEEEEECCCCEEEEeecCC-----------------CCcHHHH---HHH-HHHHHHhc
Confidence 89999999998774 33456799999999999999975431 2222333 234 56999999
Q ss_pred CCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeec
Q 043137 81 GKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVIN 160 (445)
Q Consensus 81 G~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~ 160 (445)
|+||.+++++|+.|++.+. |+.+++..+|+|||||||||+.||.+|+|||+||| |+.++++|++.. ..
T Consensus 59 G~d~~~~e~~~~~~~~~~~-------~~~~g~~~~A~saID~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~y~s--~~ 126 (409)
T 3go2_A 59 GASVMEHERFFAEAYCLTR-------PATGGVVSEGIGAIENALLDAKAKTLNVPCYELLG---GKLRDRVPVYWS--HC 126 (409)
T ss_dssp TSBTTCHHHHHHHHHHHHG-------GGCSHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTT---CCSCSEEEEEEC--ST
T ss_pred CCChhhHHHHHHHHHHHhc-------cCCchHHHHHHHHHHHHHHHHhHHHcCCcHHHHcC---CCCCCeEEEEEe--ec
Confidence 9999999999999985432 22344556899999999999999999999999999 987888888532 11
Q ss_pred CcccCC-CCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCc------ccCCCCCCCCCcc-------Ch
Q 043137 161 GGSHAG-NKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDAT------NVGDEGGFAPNIQ-------EN 226 (445)
Q Consensus 161 gg~~~~-~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~------~~~~~g~~~~~~~-------~~ 226 (445)
+++... ....... ...++...+++.+...++|+++| .|++.... ..|..+.+.++.+ .+
T Consensus 127 ~~~~i~~~~~~~~~---~~~~e~~~~~a~~~~~~Gf~~iK----lKv~~~~~~~~~~~~pG~~~~~~~~~~~~~~~~~~~ 199 (409)
T 3go2_A 127 PTWRINHPKFFGPP---VTDLDGVKRTAEEARERQFRAIK----TNIFIHDDGPLHAWRPGFAVPFQPALNVDRKVLRNL 199 (409)
T ss_dssp THHHHHCTTTSSSC---CCSHHHHHHHHHHHHHTTCCEEE----ECCEECSSSSCEECBGGGTBSCCTTCCCCHHHHHHH
T ss_pred CccccccccccccC---CCCHHHHHHHHHHHHHcCCCEEE----EcccccccccccccccCCCccCCcccccchHHHHHH
Confidence 111000 0000000 00112223344444444565554 34310000 0010001122221 12
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCc
Q 043137 227 KEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQ 306 (445)
Q Consensus 227 ~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~ 306 (445)
.++++++|+++ | +++.|++|+ |++||.++++++ .+.++++++.|||||+
T Consensus 200 ~e~v~avR~av---G--~d~~l~vDa-----------------------N~~~~~~~A~~~-~~~L~~~~i~~iE~P~-- 248 (409)
T 3go2_A 200 RAHLEALRDGA---G--PDVEILLDL-----------------------NFNAKPEGYLKI-LRELADFDLFWVEIDS-- 248 (409)
T ss_dssp HHHHHHHHHHH---C--TTSEEEEEC-----------------------TTCSCHHHHHHH-HHHTTTSCCSEEECCC--
T ss_pred HHHHHHHHHHh---C--CCCEEEEEC-----------------------CCCCCHHHHHHH-HHHHhhcCCeEEEeCc--
Confidence 34455454444 6 589999999 367899999987 5568999999999997
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCC
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGET 386 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et 386 (445)
+|++++++|+++++ +||++||+. .++++++++++.+++|++|||+++ ||||++++++++|+++|+++++ |+ .++
T Consensus 249 ~d~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~~~d~v~~k~~~-GGit~~~~ia~~A~~~gi~~~~-h~-~~s 322 (409)
T 3go2_A 249 YSPQGLAYVRNHSP--HPISSCETL-FGIREFKPFFDANAVDVAIVDTIW-NGVWQSMKIAAFADAHDINVAP-HN-FYG 322 (409)
T ss_dssp SCHHHHHHHHHTCS--SCEEECTTC-CHHHHHHHHHHTTCCSEEEECHHH-HCHHHHHHHHHHHHHTTCEEEE-CC-CSC
T ss_pred CCHHHHHHHHhhCC--CCEEeCCCc-CCHHHHHHHHHhCCCCEEEeCCCC-CCHHHHHHHHHHHHHcCCEEee-cC-CCc
Confidence 49999999999998 999999985 569999999999999999999999 9999999999999999999976 74 677
Q ss_pred hhhH--HHHHHhhhc
Q 043137 387 EDTF--IADLSVGLA 399 (445)
Q Consensus 387 ~~~~--~~~la~a~~ 399 (445)
.++. .+||++++.
T Consensus 323 ~i~~aa~~hlaaa~p 337 (409)
T 3go2_A 323 HLCTMINANFAAAVP 337 (409)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCC
Confidence 6654 556665544
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=378.82 Aligned_cols=296 Identities=18% Similarity=0.219 Sum_probs=231.2
Q ss_pred eEEEEEEEEEEecC--------CC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFDS--------RG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~~--------~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+..+ .+ +..++|+|+||+|++|||+++.. +.|++++...+.+.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~---------------~~~~~e~~~~~~~~ 65 (367)
T 3dg3_A 1 MKIVAIGAIPFSIPYTKPLRFASGEVHAAEHVLVRVHTDDGIVGVAEAPPR---------------PFTYGETQTGIVAV 65 (367)
T ss_dssp CBEEEEEEEEEEECBC-----------CEEEEEEEEEETTSCEEEEEECCC---------------TTTTCCCHHHHHHH
T ss_pred CEEEEEEEEEEEeeccCCeeccCeEEeeeeEEEEEEEECCCCEEEEeccCC---------------CCccCCCHHHHHHH
Confidence 89999999888532 12 35689999999999999976432 12556777787888
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
|++.+.|.|+|+||.+++++|+.|. ... + ..+|++|||+||||+.||.+|+|||+||| | .+++
T Consensus 66 i~~~l~~~l~G~d~~~~~~~~~~l~-~~~----------~--~~~a~~aid~AlwDl~gk~~g~Pl~~llG---g-~~~~ 128 (367)
T 3dg3_A 66 IEQYFAPALIGLTLTEREVAHTRMA-RTV----------G--NPTAKAAIDMAMWDALGQSLRLSVSEMLG---G-YTDR 128 (367)
T ss_dssp HHHTHHHHHTTCBTTCHHHHHHHHT-TSC----------S--CHHHHHHHHHHHHHHHHHHHTCBHHHHHT---C-CCSE
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHH-hcc----------C--chHHHHHHHHHHHHHHHHHcCCcHHHHhC---C-CCCe
Confidence 8889999999999999999999988 321 1 25799999999999999999999999999 8 6677
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHH-HHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVE-VYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEG 229 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~-~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~ 229 (445)
+|++. +++.+ + +++.++++.+...+ +|+++| .|+|. .+ .+.+.++
T Consensus 129 v~~~~--~~~~~-------~---------~~~~~~~a~~~~~~~G~~~~K----~K~g~-----------~~-~~~d~~~ 174 (367)
T 3dg3_A 129 MRVSH--MLGFD-------D---------PVKMVAEAERIRETYGINTFK----VKVGR-----------RP-VQLDTAV 174 (367)
T ss_dssp EEEEE--EEESS-------C---------HHHHHHHHHHHHHHHCCCEEE----EECCC-----------SS-THHHHHH
T ss_pred EEEEE--EecCC-------C---------HHHHHHHHHHHHHhcCccEEE----EeeCC-----------Ch-hhhHHHH
Confidence 87743 33211 0 12234455554444 565543 45442 11 1134666
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCH
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDW 309 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~ 309 (445)
++++|+++ | +++.|++|+ |++||.++++++ .+.++++++.|||||++++|+
T Consensus 175 v~avR~a~---g--~~~~l~vDa-----------------------n~~~~~~~a~~~-~~~l~~~~i~~iEqP~~~~d~ 225 (367)
T 3dg3_A 175 VRALRERF---G--DAIELYVDG-----------------------NRGWSAAESLRA-MREMADLDLLFAEELCPADDV 225 (367)
T ss_dssp HHHHHHHH---G--GGSEEEEEC-----------------------TTCSCHHHHHHH-HHHTTTSCCSCEESCSCTTSH
T ss_pred HHHHHHHh---C--CCCEEEEEC-----------------------CCCCCHHHHHHH-HHHHHHhCCCEEECCCCcccH
Confidence 66666665 5 589999999 367899999987 567899999999999999999
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+++++|+++++ +||++||+. .++++++++++.+++|++|+|++++ |||++++++++|+++|++++++| +.|+.++
T Consensus 226 ~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~~~d~v~~k~~~~-Git~~~~ia~~A~~~gi~~~~~~-~~es~i~ 300 (367)
T 3dg3_A 226 LSRRRLVGQLD--MPFIADESV-PTPADVTREVLGGSATAISIKTART-GFTGSTRVHHLAEGLGLDMVMGN-QIDGQIG 300 (367)
T ss_dssp HHHHHHHHHCS--SCEEECTTC-SSHHHHHHHHHHTSCSEEEECHHHH-TTHHHHHHHHHHHHHTCEEEECC-SSCCHHH
T ss_pred HHHHHHHHhCC--CCEEecCCc-CCHHHHHHHHHcCCCCEEEeehhhh-hHHHHHHHHHHHHHcCCeEEECC-cCCcHHH
Confidence 99999999998 999999985 6799999999999999999999999 99999999999999999998877 5688766
Q ss_pred HH--HHHHhhh
Q 043137 390 FI--ADLSVGL 398 (445)
Q Consensus 390 ~~--~~la~a~ 398 (445)
.. +||+.++
T Consensus 301 ~aa~~hlaaa~ 311 (367)
T 3dg3_A 301 TACTVSFGTAF 311 (367)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhC
Confidence 54 4554443
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-47 Score=383.90 Aligned_cols=297 Identities=18% Similarity=0.262 Sum_probs=229.7
Q ss_pred eEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+.. +.+ +..++|+|+||+|++|||++...+ .|++++...+...
T Consensus 5 mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~l~td~G~~G~GE~~~~~---------------~~~~e~~~~~~~~ 69 (389)
T 3s5s_A 5 TLIRRVSIEALDIPLHEPFGIAGGAQERAANLLVTVELADGTLGFGEAAPLP---------------AFNGETQDGSRAA 69 (389)
T ss_dssp TBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCH---------------HHHSCCHHHHHHH
T ss_pred CEEEEEEEEEEEEecCCceeccCceEEeeeEEEEEEEECCCCEEEEeccCCC---------------CcCccCHHHHHHH
Confidence 8999999987742 333 356899999999999999754311 1445666777766
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
+ +.+.|.|+|+||.+++++|+.|.+.+.+ ...+|++|||+||||+.||.+|+|||+||| |.. ++
T Consensus 70 l-~~l~~~l~G~d~~~~~~~~~~l~~~~~~-----------~~~~A~said~ALwDl~gk~~g~Pl~~LLG---g~~-~~ 133 (389)
T 3s5s_A 70 A-VSLREAVVGSDARAWRAVARALREASGG-----------GAGAARCAIETAILDALTKRAGMPLWAFFG---GSG-TA 133 (389)
T ss_dssp H-HHTHHHHTTSBGGGHHHHHHHHHHHHTT-----------CCHHHHHHHHHHHHHHHHHTTTCBHHHHTT---CSC-SE
T ss_pred H-HHHHHHhcCCCccCHHHHHHHHHHhhcc-----------ChHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCC-Cc
Confidence 7 4699999999999999999999843321 113799999999999999999999999999 865 56
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGL 230 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l 230 (445)
+|++. +++.+ .++..++++.+...++|+++| .|+|. .+.+.+.+++
T Consensus 134 v~~~~--t~~~~----------------~~e~~~~~a~~~~~~G~~~iK----lKvg~------------~~~~~d~~~v 179 (389)
T 3s5s_A 134 LTTDI--TITTG----------------SPERAEEAARRAAAMGFRALK----VKVGG------------RLAASDPARI 179 (389)
T ss_dssp EECCE--EECSS----------------CSHHHHHHHHHHHHHTCCEEE----EECCG------------GGTTTHHHHH
T ss_pred eEEEe--eecCC----------------CHHHHHHHHHHHHHcCCCeEE----EEecC------------CChHHHHHHH
Confidence 77643 22211 112334455555555666554 45441 1134557777
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhh--ccCCeeeEECCCCcCC
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFI--SDYPIVSIEDPFDQDD 308 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l--~~~~i~~iEdP~~~~D 308 (445)
+++|+++ +++.|++|+ |+.||.++++++ .+.+ +++++.|||||++++|
T Consensus 180 ~avR~~~------~~~~L~vDa-----------------------N~~w~~~~A~~~-~~~L~~~~~~i~~iEeP~~~~d 229 (389)
T 3s5s_A 180 EAIHAAA------PGASLILDG-----------------------NGGLTAGEALAL-VAHARRLGADVALLEQPVPRDD 229 (389)
T ss_dssp HHHHHHC------TTCEEEEEC-----------------------TTCSCHHHHHHH-HHHHHHTTCEEEEEECCSCTTC
T ss_pred HHHHHhC------CCCeEEEEC-----------------------CCCCCHHHHHHH-HHHHhhCCCCeEEEECCCCccc
Confidence 7666654 578999999 467899999988 4568 8899999999999999
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~ 388 (445)
++++++|+++++ +||++||+. .++++++++++.+++|++|||+++ ||||++++++++|+++|+++++++ +.|+.+
T Consensus 230 ~~~~~~l~~~~~--iPIa~dEs~-~~~~~~~~~i~~~a~d~v~~k~~~-GGit~~~~i~~~A~~~gi~~~~~~-~~es~i 304 (389)
T 3s5s_A 230 WDGMKEVTRRAG--VDVAADESA-ASAEDVLRVAAERAATVVNIKLMK-GGIAEALDIAAVARAAGLGLMIGG-MVESVL 304 (389)
T ss_dssp HHHHHHHHHHSS--SCEEESTTC-SSHHHHHHHHHTTCCSEEEECHHH-HHHHHHHHHHHHHHHTTCEEEECC-SSCCHH
T ss_pred HHHHHHHHhhCC--CCEEECCCC-CCHHHHHHHHHcCCCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEecC-CcccHH
Confidence 999999999998 999999985 679999999999999999999999 999999999999999999998866 467766
Q ss_pred h--HHHHHHhhhc
Q 043137 389 T--FIADLSVGLA 399 (445)
Q Consensus 389 ~--~~~~la~a~~ 399 (445)
+ +.+||+.+++
T Consensus 305 g~aa~~hlaaa~p 317 (389)
T 3s5s_A 305 AMTASACFAAGLG 317 (389)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhCC
Confidence 5 5566666544
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-47 Score=388.89 Aligned_cols=303 Identities=20% Similarity=0.272 Sum_probs=227.0
Q ss_pred ceEEEEEEEEEEec------------------------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeec
Q 043137 2 AITITAVKARQIFD------------------------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELR 53 (445)
Q Consensus 2 ~mkI~~v~~~~v~~------------------------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~ 53 (445)
+||||+|+++.+-- +.+ +.+++|+|+||+|++|||++...
T Consensus 22 ~m~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~lV~v~td~G~~G~GE~~~~------------ 89 (412)
T 3stp_A 22 SMKIKSVRTRVWTWKGPTVPPQGNFCTNASDALWMKGDAMSSFRFHQWLTCEVETEDGTIGIGNAALA------------ 89 (412)
T ss_dssp -CCEEEEEEEEEEECSCCCCCCSSSCCCGGGGSCCCSCTTTTTCCCEEEEEEEEETTSCEEEEEECSS------------
T ss_pred ccEEEEEEEEEEeccCCCCCCCCCCCCCchhccCCCCCcceEEEeccEEEEEEEECCCCEEEEeccCC------------
Confidence 49999999977731 111 23589999999999999965321
Q ss_pred cCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcC
Q 043137 54 DGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKK 133 (445)
Q Consensus 54 ~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g 133 (445)
...+...|++.|+|.|+|+||.+++++|+.|++.+. .+|+.++..+|+|||||||||+.||.+|
T Consensus 90 ----------~~~~~~~i~~~l~p~LiG~dp~~~e~l~~~~~~~~~------~~g~~g~~~~A~saiD~ALwDl~gK~~g 153 (412)
T 3stp_A 90 ----------PSVVKKVIDDWYAPLVIGEDPFDYAYIWEKMYRRSH------AWGRKGIGMTAISAIDIAIWDLMGKLVG 153 (412)
T ss_dssp ----------HHHHHHHHHHTTHHHHTTSCGGGHHHHHHHHHHHTH------HHHSSTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----------HHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHhh------hcCCcchHHHHHHHHHHHHHHHHhhhcC
Confidence 124455677789999999999999999999984321 1223445578999999999999999999
Q ss_pred CchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 043137 134 IPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNV 213 (445)
Q Consensus 134 ~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~ 213 (445)
+|||+||| |..++++|++... +..+ + ++..++++.+...++|+.+| .|+|....
T Consensus 154 ~Pv~~LLG---G~~r~~v~~y~s~-~~~~-------~---------~e~~~~~a~~~~~~Gf~~iK----ik~g~gp~-- 207 (412)
T 3stp_A 154 KPVFKLLG---GRTKDRIPVYYSK-LYAG-------S---------IEAMQKEAEEAMKGGYKAFK----SRFGYGPK-- 207 (412)
T ss_dssp CBHHHHHT---CCSSSSEEEEEEC-CCSC-------C---------HHHHHHHHHHHHTTTCSEEE----EECCCCGG--
T ss_pred CCHHHhcC---CCCCceEEEEEEe-cCCC-------C---------HHHHHHHHHHHHHcCCCEEE----EecccCcc--
Confidence 99999999 9877888875421 1100 1 12223444444334555443 34432100
Q ss_pred CCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhc
Q 043137 214 GDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFIS 293 (445)
Q Consensus 214 ~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~ 293 (445)
+|+ .+++.+.++++++|+++ | +++.|++|+ |++||.++++++ .+.++
T Consensus 208 --dg~--~~~~~die~v~avReav---G--~d~~L~vDa-----------------------N~~~~~~~Ai~~-~~~Le 254 (412)
T 3stp_A 208 --DGM--PGMRENLKRVEAVREVI---G--YDNDLMLEC-----------------------YMGWNLDYAKRM-LPKLA 254 (412)
T ss_dssp --GHH--HHHHHHHHHHHHHHHHH---C--SSSEEEEEC-----------------------TTCSCHHHHHHH-HHHHG
T ss_pred --ccc--chHHHHHHHHHHHHHHc---C--CCCeEEEEC-----------------------CCCCCHHHHHHH-HHHHH
Confidence 011 11223455555555554 5 589999999 367899999987 56689
Q ss_pred cCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHc
Q 043137 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQA 373 (445)
Q Consensus 294 ~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~ 373 (445)
++++.|||||++++|++++++|+++++ +||++||+. .++++++++++.+++|+||||++++||||++++++++|+++
T Consensus 255 ~~~i~~iEeP~~~~d~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~li~~~a~D~v~ik~~~~GGit~a~kia~~A~a~ 331 (412)
T 3stp_A 255 PYEPRWLEEPVIADDVAGYAELNAMNI--VPISGGEHE-FSVIGCAELINRKAVSVLQYDTNRVGGITAAQKINAIAEAA 331 (412)
T ss_dssp GGCCSEEECCSCTTCHHHHHHHHHTCS--SCEEECTTC-CSHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHHHHHHHH
T ss_pred hcCCCEEECCCCcccHHHHHHHHhCCC--CCEEeCCCC-CCHHHHHHHHHcCCCCEEecChhhcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999988 999999985 67999999999999999999999999999999999999999
Q ss_pred CCcEEecCCCCCChhhHHHHHHhhhc
Q 043137 374 GWGVMASHRSGETEDTFIADLSVGLA 399 (445)
Q Consensus 374 g~~~~~~~~~~et~~~~~~~la~a~~ 399 (445)
|+++++++ +.++++||++|+.
T Consensus 332 gi~v~~h~-----~~aa~~hlaaA~~ 352 (412)
T 3stp_A 332 QIPVIPHA-----GQMHNYHLTMANT 352 (412)
T ss_dssp TCCBCCSS-----CSHHHHHHHHTCT
T ss_pred CCEEEecc-----HHHHHHHHHHhCC
Confidence 99986544 4567889887654
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=381.59 Aligned_cols=299 Identities=17% Similarity=0.153 Sum_probs=234.1
Q ss_pred eEEEEEEEEEEecC--------CC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFDS--------RG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~~--------~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+..+ .+ +..++|+|+| +|++|||++.... .|.|++++..++...
T Consensus 7 MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~lV~v~t-~G~~G~GE~~~~~-------------~p~~~~et~~~~~~~ 72 (400)
T 3mwc_A 7 ARIDGVSLYEIVIPMKIPFQISSGTCYTRRSLVVEIRE-GDLFGYGESAPFE-------------EPFYLGETLETTKVI 72 (400)
T ss_dssp CCCCEEEEEEEEEECSSCCCBTTBCCCEEEEEEEEEEE-TTEEEEEEECCBS-------------STTSTTCBHHHHHHH
T ss_pred cEEEEEEEEEEeccccCceEccCceEeeeeEEEEEEEE-CCeEEEEecccCC-------------CCccccCcHHHHHHH
Confidence 89999999888532 22 3468999999 9999999654311 134778888888888
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccC-----
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSG----- 145 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G----- 145 (445)
|++.++|.|+|+||.+++.+|+.|.+.+. + ..+|++|||+||||+.||.+|+|||+||| |
T Consensus 73 i~~~l~p~liG~d~~~~e~~~~~l~~~~~----------g--~~~A~said~ALwDl~gk~~g~Pl~~LLG---G~~~~~ 137 (400)
T 3mwc_A 73 LKNHLLPMILGKEPLSIEEFNHLIKNGIR----------G--NHFARCGVENAYWDLIAKKNKISLKAMIE---KKMKNL 137 (400)
T ss_dssp HHHTHHHHHTTCCCSSHHHHHHHHHHSCC----------S--CHHHHHHHHHHHHHHHHHHTTCBHHHHHH---HHHHHT
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHhc----------C--CHHHHHHHHHHHHHHHHHHcCCcHHHHhC---Cccccc
Confidence 98889999999999999999999983111 1 14699999999999999999999999999 7
Q ss_pred -------CCcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCC
Q 043137 146 -------NKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGG 218 (445)
Q Consensus 146 -------~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~ 218 (445)
..++++|++.. + |... .. .++...+++.+...++|+++| .|++
T Consensus 138 ~~~~~~~~~r~~v~~~~s--~--g~~~--~~---------~~e~~~~~a~~~~~~G~~~iK----lKv~----------- 187 (400)
T 3mwc_A 138 GVKQEYLASNNYIESGAA--L--GIPE--DG---------RIETLIHQVEESLQEGYRRIK----IKIK----------- 187 (400)
T ss_dssp TCCGGGGCBCSEEEBCEE--E--CCCT--TC---------CHHHHHHHHHHHHHHTCSCEE----EECB-----------
T ss_pred ccccccccCCCeEEeeEE--e--ccCC--CC---------CHHHHHHHHHHHHHcCCCEEE----EEeC-----------
Confidence 66777877442 2 2100 00 012234445444444565543 3321
Q ss_pred CCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCee
Q 043137 219 FAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIV 298 (445)
Q Consensus 219 ~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~ 298 (445)
+ +.+.++++++|+++ | +++.|++|+ |++||.++ +++ .+.++++++.
T Consensus 188 --~--~~d~~~v~avR~a~---G--~~~~L~vDa-----------------------N~~w~~~~-~~~-~~~l~~~~i~ 233 (400)
T 3mwc_A 188 --P--GWDVEPLQETRRAV---G--DHFPLWTDA-----------------------NSSFELDQ-WET-FKAMDAAKCL 233 (400)
T ss_dssp --T--TBSHHHHHHHHHHH---C--TTSCEEEEC-----------------------TTCCCGGG-HHH-HHHHGGGCCS
T ss_pred --c--chHHHHHHHHHHhc---C--CCCEEEEeC-----------------------CCCCCHHH-HHH-HHHHHhcCCC
Confidence 1 24577888777776 5 589999999 36788888 877 4678999999
Q ss_pred eEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEE
Q 043137 299 SIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVM 378 (445)
Q Consensus 299 ~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~ 378 (445)
|||||++++|++++++|+++++ +||++||+. .++++++++++.+++|++|||++++||||++++++++|+++|++++
T Consensus 234 ~iEqP~~~~d~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~ 310 (400)
T 3mwc_A 234 FHEQPLHYEALLDLKELGERIE--TPICLDESL-ISSRVAEFVAKLGISNIWNIKIQRVGGLLEAIKIYKIATDNGIKLW 310 (400)
T ss_dssp CEESCSCTTCHHHHHHHHHHSS--SCEEESTTC-CSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEE
T ss_pred EEeCCCChhhHHHHHHHHhhCC--CCEEEeCCc-CCHHHHHHHHhcCCCCEEEEcchhhCCHHHHHHHHHHHHHcCCEEE
Confidence 9999999999999999999998 999999985 5699999999999999999999999999999999999999999997
Q ss_pred ecCCCCCChhhHHHHHHhhh
Q 043137 379 ASHRSGETEDTFIADLSVGL 398 (445)
Q Consensus 379 ~~~~~~et~~~~~~~la~a~ 398 (445)
+++ +.|+.++.++.++++.
T Consensus 311 ~~~-~~es~i~~aa~~hlaa 329 (400)
T 3mwc_A 311 GGT-MPESGLGARFLISLAS 329 (400)
T ss_dssp ECC-SCCCHHHHHHHHHHTT
T ss_pred ecC-CCCCHHHHHHHHHHHc
Confidence 766 5788887666666654
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-47 Score=383.32 Aligned_cols=297 Identities=13% Similarity=0.178 Sum_probs=222.5
Q ss_pred CceEEEEEEEEEEec--------CCC------CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHH
Q 043137 1 MAITITAVKARQIFD--------SRG------NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSK 66 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~--------~~g------~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~ 66 (445)
|.|||++|+++.+.. +.+ +..++|+|+||+|++|||++.... +.|++++...
T Consensus 1 m~MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~~~V~v~td~G~~G~GE~~~~~--------------~~~~~~~~~~ 66 (378)
T 3eez_A 1 MSLKITRITVYQVDLPLEHPYWLSGGRLKFELLDATLVKLETDAGITGWGEGTPWG--------------HTYVPAHGPG 66 (378)
T ss_dssp --CCEEEEEEEEEEEEBSSCCC------CCCEEEEEEEEEEETTCCCEEEEECCSC--------------SSSSSCCHHH
T ss_pred CCcEEEEEEEEEEeccCCCceeecCCcceeeeeeEEEEEEEECCCCEEEecccCCC--------------CccCCCcHHH
Confidence 789999999988842 223 145899999999999999653210 1255555666
Q ss_pred HHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCC
Q 043137 67 AVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGN 146 (445)
Q Consensus 67 a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~ 146 (445)
+.+.++ .++|.|+|+||.+++.+|+.|.+.+. + ..+|++|||+||||+.||.+|+|||+||| |.
T Consensus 67 ~~~~l~-~l~p~l~G~d~~~~~~~~~~l~~~~~----------g--~~~A~said~ALwDl~gk~~g~Pl~~LlG---g~ 130 (378)
T 3eez_A 67 IRAGIE-TMAPFVLGLDPRRLLDVERAMDIALP----------G--HLYAKSPIDMACWDIAGQAAGLPIADLMG---GG 130 (378)
T ss_dssp HHHHHH-HHHHHHTTSCTTCHHHHHHHHHHHSS----------S--CHHHHHHHHHHHHHHHHHHTTSBHHHHTT---CC
T ss_pred HHHHHH-HHHHHhcCCCcCCHHHHHHHHHHHhc----------C--cHHHHHHHHHHHHHHHHHHhCCcHHHHhC---CC
Confidence 666675 59999999999999999999984332 1 15799999999999999999999999999 98
Q ss_pred CcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCh
Q 043137 147 KNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQEN 226 (445)
Q Consensus 147 ~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~ 226 (445)
.++++|++. +++++ + ++...+++.+...++|+.+| .|+|. +.
T Consensus 131 ~r~~v~~~~--~~~~~-------~---------~e~~~~~a~~~~~~G~~~iK----iK~G~-------------~~--- 172 (378)
T 3eez_A 131 SRTPRPIAS--SVGAK-------S---------VEETRAVIDRYRQRGYVAHS----VKIGG-------------DV--- 172 (378)
T ss_dssp CCSCEEBBC--CBCSC-------C---------HHHHHHHHHHHHHTTCCEEE----EECCS-------------CH---
T ss_pred CCCeEEEEE--EecCC-------C---------HHHHHHHHHHHHhCCCCEEE----eccCC-------------CH---
Confidence 777888743 22111 1 11223333333333454433 34331 12
Q ss_pred HHHHHHHHHHHHH-hCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCC
Q 043137 227 KEGLELLNTAIAK-AGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFD 305 (445)
Q Consensus 227 ~~~l~~l~~av~~-~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~ 305 (445)
.+.++.+ +++|+ +| +++.|++|+ |++||.++++++ .+.++++++ |||||++
T Consensus 173 ~~d~~~v-~avR~a~g--~~~~l~vDa-----------------------n~~~~~~~a~~~-~~~l~~~~i-~iEqP~~ 224 (378)
T 3eez_A 173 ERDIARI-RDVEDIRE--PGEIVLYDV-----------------------NRGWTRQQALRV-MRATEDLHV-MFEQPGE 224 (378)
T ss_dssp HHHHHHH-HHHTTSCC--TTCEEEEEC-----------------------TTCCCHHHHHHH-HHHTGGGTC-CEECCSS
T ss_pred HHHHHHH-HHHHHHcC--CCceEEEEC-----------------------CCCCCHHHHHHH-HHHhccCCe-EEecCCC
Confidence 3334444 34444 45 589999999 367899999987 566899999 9999998
Q ss_pred cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCC
Q 043137 306 QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGE 385 (445)
Q Consensus 306 ~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~e 385 (445)
|++++++|+++++ +||++||+. .++++++++++.+++|++|||++++||+|++++++++|+++|++++++|+ .|
T Consensus 225 --~~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~l~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~g~~~~~~~~-~e 298 (378)
T 3eez_A 225 --TLDDIAAIRPLHS--APVSVDECL-VTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALTHGIDMFVMAT-GG 298 (378)
T ss_dssp --SHHHHHHTGGGCC--CCEEECTTC-CSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCEEEEECS-SC
T ss_pred --CHHHHHHHHhhCC--CCEEECCCC-CCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHcCCEEEcCCC-CC
Confidence 8999999999998 999999985 67999999999999999999999999999999999999999999998884 67
Q ss_pred ChhhHH--HHHHhhhc
Q 043137 386 TEDTFI--ADLSVGLA 399 (445)
Q Consensus 386 t~~~~~--~~la~a~~ 399 (445)
+.++.. +||+.++.
T Consensus 299 s~i~~aa~~hlaaa~~ 314 (378)
T 3eez_A 299 SVLADAEALHLAATIP 314 (378)
T ss_dssp SHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHhCC
Confidence 876644 55555543
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-47 Score=387.71 Aligned_cols=305 Identities=16% Similarity=0.190 Sum_probs=225.4
Q ss_pred ceEEEEEEEEEEecC--------CC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHH
Q 043137 2 AITITAVKARQIFDS--------RG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVS 69 (445)
Q Consensus 2 ~mkI~~v~~~~v~~~--------~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~ 69 (445)
.|||++|+++.+..+ .+ +..++|+|+||+|++|||++...+ .|++++...+..
T Consensus 26 ~mkI~~i~~~~~~~Pl~~p~~~a~g~~~~~~~~~V~v~td~G~~G~GE~~~~~---------------~~~~e~~~~~~~ 90 (393)
T 3u9i_A 26 PTTIRALTVAPLDIPLHEPFGIASGAQEVARNLLVAVELTDGTRGYGEAAPFP---------------AFNGETQDMAHA 90 (393)
T ss_dssp TTBEEEEEEEEEEEEBCC----------EEEEEEEEEEETTSCEEEEEECCCH---------------HHHSCCHHHHHH
T ss_pred CcEEEEEEEEEEEEecCCceEccCceEEeeeEEEEEEEECCCCEEEEEeeCCC---------------CcCcCCHHHHHH
Confidence 389999999887532 22 246899999999999999754311 245666777776
Q ss_pred HHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcc
Q 043137 70 NVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNL 149 (445)
Q Consensus 70 ~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~ 149 (445)
.++ .++|.|+|+||.+++++|+.|. ... ....+|++|||+||||+.||.+|+|||+||| |.. +
T Consensus 91 ~l~-~l~p~l~G~d~~~~~~~~~~l~-~~~-----------~~~~~A~said~ALwDl~gK~~g~Pl~~LLG---g~~-~ 153 (393)
T 3u9i_A 91 AIL-AARSLVEGADVREWRRIALALP-ALP-----------GMTGSARCAIETAILDALTRRARLPLWAFFG---GAA-T 153 (393)
T ss_dssp HHH-HTHHHHTTSBGGGHHHHHHHGG-GST-----------TCCHHHHHHHHHHHHHHHHHHTTCBHHHHTT---CSC-S
T ss_pred HHH-HHHHHhcCCCcCCHHHHHHHHH-Hhc-----------CccHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCC-C
Confidence 674 6999999999999999998887 321 0125799999999999999999999999999 875 5
Q ss_pred eeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHH
Q 043137 150 VLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEG 229 (445)
Q Consensus 150 ~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~ 229 (445)
++|++. .++.+ .++..++++.+...++|+++| .|+|...... .....++.+.++
T Consensus 154 ~v~~~~--t~~~~----------------~~e~~~~~a~~~~~~Gf~~iK----lKvg~~~~~~----~~~~~~~~di~~ 207 (393)
T 3u9i_A 154 SLETDV--TITTG----------------SVTAAARAAQAIVARGVTTIK----IKIGAGDPDA----TTIRTMEHDLAR 207 (393)
T ss_dssp EEECCE--EEC-------------------CHHHHHHHHHHHTTTCCEEE----EECC-----------CHHHHHHHHHH
T ss_pred ceEEEE--EecCC----------------CHHHHHHHHHHHHHcCCCeEE----EEeCCCcccc----cccccHHHHHHH
Confidence 677643 22111 112334455554445665554 4544210000 000002233444
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhh--ccCCeeeEECCCCcC
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFI--SDYPIVSIEDPFDQD 307 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l--~~~~i~~iEdP~~~~ 307 (445)
++++|+++ +++.|++|+ |+.||.++++++ .+.+ ++|++.|||||++++
T Consensus 208 v~avR~a~------~d~~L~vDa-----------------------N~~w~~~~A~~~-~~~L~~~~~~i~~iEeP~~~~ 257 (393)
T 3u9i_A 208 IVAIRDVA------PTARLILDG-----------------------NCGYTAPDALRL-LDMLGVHGIVPALFEQPVAKD 257 (393)
T ss_dssp HHHHHHHS------TTSEEEEEC-----------------------CSCCCHHHHHHH-HHTTTTTTCCCSEEECCSCTT
T ss_pred HHHHHHHC------CCCeEEEEc-----------------------cCCCCHHHHHHH-HHHHhhCCCCeEEEECCCCCC
Confidence 54444443 578999999 467899999987 4668 889999999999999
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCCh
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETE 387 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~ 387 (445)
|++++++|+++++ +||++||+. .++++++++++.+++|++|||+++ ||||++++++++|+++|+++++++ +.|+.
T Consensus 258 d~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~a~d~i~~k~~~-GGit~~~~ia~~A~~~gi~~~~~~-~~es~ 332 (393)
T 3u9i_A 258 DEEGLRRLTATRR--VPVAADESV-ASATDAARLARNAAVDVLNIKLMK-CGIVEALDIAAIARTAGLHLMIGG-MVESL 332 (393)
T ss_dssp CTTHHHHHHHTCS--SCEEESTTC-CSHHHHHHHHHTTCCSEEEECHHH-HCHHHHHHHHHHHHHHTCEEEECC-SSCCH
T ss_pred cHHHHHHHHhhCC--CcEEeCCcC-CCHHHHHHHHHcCCCCEEEecccc-cCHHHHHHHHHHHHHcCCeEEecC-CcccH
Confidence 9999999999998 999999985 679999999999999999999999 999999999999999999998766 56886
Q ss_pred hh--HHHHHHhhhc
Q 043137 388 DT--FIADLSVGLA 399 (445)
Q Consensus 388 ~~--~~~~la~a~~ 399 (445)
++ +.+||+.+++
T Consensus 333 ig~aa~~hlaaa~p 346 (393)
T 3u9i_A 333 LAMTVSACFAAGQG 346 (393)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCC
Confidence 65 4556655543
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-47 Score=383.02 Aligned_cols=295 Identities=15% Similarity=0.198 Sum_probs=230.6
Q ss_pred eEEEEEEEEEEe--------cCCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIF--------DSRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~--------~~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+. .+.+ +..++|+|+||+|++|||++...+ .+.|++++..++...
T Consensus 1 MkI~~i~~~~~~lpl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~-------------~p~~~~e~~~~~~~~ 67 (388)
T 3qld_A 1 MSLQTCVLHRLSLPLKFPMRTAHGHIREKQAILVQLVDADGIEGWSECVALA-------------EPTYTEECTDTAWVM 67 (388)
T ss_dssp -CEEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEEEETTSCEEEEEECCCS-------------STTSSSCCHHHHHHH
T ss_pred CEEEEEEEEEEecccCCceEccceEEEeeeEEEEEEEECCCCEEEEecccCC-------------CCccccccHHHHHHH
Confidence 899999998774 2333 356899999999999999653211 123677788888888
Q ss_pred HHHhHhhhhc-------CCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccc
Q 043137 71 VNAIIGPALA-------GKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAEL 143 (445)
Q Consensus 71 i~~~l~p~Li-------G~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~ 143 (445)
+++.+.|.|+ |+++.+++.+++.|. .+. + ..+|++||||||||+.||.+|+|||+|||
T Consensus 68 l~~~l~p~l~~~~~~~~G~~~~~~~~~~~~~~-~~~----------g--~~~A~said~ALwDl~gk~~g~Pl~~LLG-- 132 (388)
T 3qld_A 68 LVHHLVPRFARWLRAASQDQDVDPRTVCEALR-DVR----------G--NRMSVAAIEMAVWDWYAARTGQPLVGLLG-- 132 (388)
T ss_dssp HHHTHHHHHHHHHTSGGGSSCCCGGGGGGGGT-TCC----------S--CHHHHHHHHHHHHHHHHHHHTCCHHHHTT--
T ss_pred HHHHHHHHHhhhhcccCCCCccCHHHHHHHHH-Hcc----------C--cHHHHHHHHHHHHHHHHHHcCCcHHHHhC--
Confidence 9889999999 999999999887765 332 1 25799999999999999999999999999
Q ss_pred cCCCcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCc
Q 043137 144 SGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNI 223 (445)
Q Consensus 144 ~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~ 223 (445)
| .++++|++. +++.+ + .++...+++.+...++|+++| .|+| +
T Consensus 133 -g-~r~~v~~~~--~~~~~-------~--------~~e~~~~~~~~~~~~G~~~~K----~Kv~-------------~-- 174 (388)
T 3qld_A 133 -G-GRDRVEVSA--TLGMS-------E--------SLDVLIQSVDAAVEQGFRRVK----LKIA-------------P-- 174 (388)
T ss_dssp -C-CCSEEEBEE--EECCC-------S--------CHHHHHHHHHHHHHTTCSEEE----EECB-------------T--
T ss_pred -C-CCCeEEEeE--EecCC-------C--------CHHHHHHHHHHHHHhCCCeEE----EEeC-------------c--
Confidence 8 467787744 33211 0 012223444444444555543 3322 1
Q ss_pred cChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECC
Q 043137 224 QENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDP 303 (445)
Q Consensus 224 ~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP 303 (445)
+.+.++++++|+++ +++.|++|+ |+.||.+++++ + +.+++|++.|||||
T Consensus 175 ~~d~~~v~avR~~~------~~~~l~vDa-----------------------N~~~~~~~A~~-~-~~l~~~~i~~iEeP 223 (388)
T 3qld_A 175 GRDRAAIKAVRLRY------PDLAIAADA-----------------------NGSYRPEDAPV-L-RQLDAYDLQFIEQP 223 (388)
T ss_dssp TBSHHHHHHHHHHC------TTSEEEEEC-----------------------TTCCCGGGHHH-H-HHGGGGCCSCEECC
T ss_pred HHHHHHHHHHHHHC------CCCeEEEEC-----------------------CCCCChHHHHH-H-HHHhhCCCcEEECC
Confidence 23477777776664 579999999 36788889875 4 56899999999999
Q ss_pred CCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCC
Q 043137 304 FDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRS 383 (445)
Q Consensus 304 ~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~ 383 (445)
++++|++++++|+++++ +||++||+. .++++++++++.+++|++|||++++||||++++++++|+++|++++++| +
T Consensus 224 ~~~~d~~~~~~l~~~~~--ipIa~dE~~-~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~-~ 299 (388)
T 3qld_A 224 LPEDDWFDLAKLQASLR--TPVCLDESV-RSVRELKLTARLGAARVLNVKPGRLGGFGATLRALDVAGEAGMAAWVGG-M 299 (388)
T ss_dssp SCTTCHHHHHHHHHHCS--SCEEESTTC-CSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECC-C
T ss_pred CCcccHHHHHHHHHhCC--CCEEeCCCC-CCHHHHHHHHHcCCCCEEEECchhhCCHHHHHHHHHHHHHCCCeEEecC-c
Confidence 99999999999999998 999999985 6699999999999999999999999999999999999999999998877 5
Q ss_pred CCChhhHHHHHHhhh
Q 043137 384 GETEDTFIADLSVGL 398 (445)
Q Consensus 384 ~et~~~~~~~la~a~ 398 (445)
.|+.++.+++++++.
T Consensus 300 ~es~i~~aa~~~laa 314 (388)
T 3qld_A 300 YETGVGRVHGLIAAA 314 (388)
T ss_dssp CCCHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHc
Confidence 688888777777764
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=379.19 Aligned_cols=304 Identities=18% Similarity=0.254 Sum_probs=234.1
Q ss_pred eEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEec-cCCCccccccceeeccCCCCCCCccHHHHHH
Q 043137 3 ITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAV-PSGASTGIYEALELRDGGSDYLGKGVSKAVS 69 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~-~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~ 69 (445)
|||++|+++.+.. +.+ +++++|+|+| +|++|||++ |.+ +++|.+++...+..
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~t-~G~~G~GE~~~~~--------------~~~~~~e~~~~~~~ 65 (370)
T 1nu5_A 1 MKIEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVKA-GGLVGIGEGGSVG--------------GPTWGSESAETIKV 65 (370)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE-TTEEEEEEECCST--------------TTTTSSCCHHHHHH
T ss_pred CEEEEEEEEEEEccccCCEEecceEEEeceeEEEEEEE-CCEEEEEEeccCC--------------CCcccCCCHHHHHH
Confidence 8999999987732 222 3468999999 999999965 332 12366777888888
Q ss_pred HHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcc
Q 043137 70 NVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNL 149 (445)
Q Consensus 70 ~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~ 149 (445)
.+++.+.|.|+|+||.+++.+|+.|.+.+. + ..+|++|||+||||+.||.+|+|||+||| |..++
T Consensus 66 ~i~~~l~~~l~G~d~~~~~~~~~~l~~~~~----------~--~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~~~~ 130 (370)
T 1nu5_A 66 IIDNYLAPLLVGKDASNLSQARVLMDRAVT----------G--NLSAKAAIDIALHDLKARALNLSIADLIG---GTMRT 130 (370)
T ss_dssp HHHHTHHHHHTTSBTTCHHHHHHHHHHHCS----------S--CHHHHHHHHHHHHHHHHHHTTCBHHHHHT---CCSCS
T ss_pred HHHHhhHHHHcCCCcccHHHHHHHHHHHhc----------C--CHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCcCC
Confidence 898889999999999999999999983221 1 25799999999999999999999999999 97777
Q ss_pred eeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHH
Q 043137 150 VLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGV-EVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKE 228 (445)
Q Consensus 150 ~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~-~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~ 228 (445)
++|++ .+++++ +. +..++++.+... ++|+.+| .|.|. .+++.+.+
T Consensus 131 ~v~~~--~~~~~~-------~~---------e~~~~~a~~~~~~~Gf~~iK----ik~g~------------~~~~~~~e 176 (370)
T 1nu5_A 131 SIPIA--WTLASG-------DT---------ARDIDSALEMIETRRHNRFK----VKLGA------------RTPAQDLE 176 (370)
T ss_dssp EEEBC--EEECSS-------CH---------HHHHHHHHHHHHTTSCSEEE----EECSS------------SCHHHHHH
T ss_pred ceEee--EEecCC-------CH---------HHHHHHHHHHHHhCCccEEE----EecCC------------CChHHHHH
Confidence 88875 333222 11 122334444333 3454433 33331 12233455
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCC
Q 043137 229 GLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDD 308 (445)
Q Consensus 229 ~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D 308 (445)
.++++|+++ | +++.|++|+| ++||.++++++ .+.++++++.|||||++++|
T Consensus 177 ~v~avr~a~---g--~~~~l~vDan-----------------------~~~~~~~a~~~-~~~l~~~~i~~iEqP~~~~~ 227 (370)
T 1nu5_A 177 HIRSIVKAV---G--DRASVRVDVN-----------------------QGWDEQTASIW-IPRLEEAGVELVEQPVPRAN 227 (370)
T ss_dssp HHHHHHHHH---G--GGCEEEEECT-----------------------TCCCHHHHHHH-HHHHHHHTCCEEECCSCTTC
T ss_pred HHHHHHHhc---C--CCCEEEEECC-----------------------CCCCHHHHHHH-HHHHHhcCcceEeCCCCccc
Confidence 666666555 5 4799999993 57888999987 45789999999999999999
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~ 388 (445)
++++++|+++++ +||++||+. +++++++++++.+++|++++|++++||+|++++++++|+++|++++++| +.|+.+
T Consensus 228 ~~~~~~l~~~~~--ipIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~-~~es~i 303 (370)
T 1nu5_A 228 FGALRRLTEQNG--VAILADESL-SSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGT-MLDSTV 303 (370)
T ss_dssp HHHHHHHHHHCS--SEEEESTTC-CSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECC-SSCCHH
T ss_pred HHHHHHHHHhCC--CCEEeCCCC-CCHHHHHHHHHhCCCCEEEEchhhcCCHHHHHHHHHHHHHcCCcEEecC-CcchHH
Confidence 999999999998 999999985 7799999999999999999999999999999999999999999998877 578887
Q ss_pred hHHHHHHhhhcCCcc
Q 043137 389 TFIADLSVGLATGQI 403 (445)
Q Consensus 389 ~~~~~la~a~~~~~~ 403 (445)
+..+.++++...+.+
T Consensus 304 ~~aa~~hlaaa~~~~ 318 (370)
T 1nu5_A 304 GTAAALHVYATLPSL 318 (370)
T ss_dssp HHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHhcCCCC
Confidence 765555555434433
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-47 Score=386.24 Aligned_cols=295 Identities=19% Similarity=0.210 Sum_probs=231.4
Q ss_pred ceEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHH
Q 043137 2 AITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVS 69 (445)
Q Consensus 2 ~mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~ 69 (445)
.|||++|+++.+.. +.+ +++++|+|+||+|++|||+++..+ .++|.++++.++..
T Consensus 19 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v~td~G~~G~GE~~~~~-------------~~~~~~e~~~~~~~ 85 (393)
T 1wuf_A 19 HMYFQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFP-------------LPDYTEETLSSAIL 85 (393)
T ss_dssp CEECCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEEEEECCCS-------------STTSSSCCHHHHHH
T ss_pred cCEEEEEEEEEEeeeccCCeEecceeEecCcEEEEEEEECCCCEEEEEeecCC-------------CCcccCCCHHHHHH
Confidence 49999999987732 222 356899999999999999765421 12377778888888
Q ss_pred HHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcc
Q 043137 70 NVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNL 149 (445)
Q Consensus 70 ~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~ 149 (445)
.+++.++|.|+|+|+.+++.+|+.|. .+++ +.+|++|||+||||+.||.+|+|||+||| | .++
T Consensus 86 ~i~~~l~p~l~G~d~~~~~~l~~~l~-~~~g------------~~~a~~aid~AlwDl~gk~~g~Pl~~lLG---g-~~~ 148 (393)
T 1wuf_A 86 IIKEQLLPLLAQRKIRKPEEIQELFS-WIQG------------NEMAKAAVELAVWDAFAKMEKRSLAKMIG---A-TKE 148 (393)
T ss_dssp HHHHTTHHHHHHCEESSTTHHHHHHT-TSCS------------CHHHHHHHHHHHHHHHHHHTTSBHHHHTT---C-CCS
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHH-HccC------------chHHHHHHHHHHHHHHHHHhCCcHHHHhC---C-CCC
Confidence 88888999999999999999998887 4321 25799999999999999999999999999 8 567
Q ss_pred eeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHH
Q 043137 150 VLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEG 229 (445)
Q Consensus 150 ~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~ 229 (445)
++|+|+. ++.+ . +. ++..+++.+...++|+++| .|+| + +.+.++
T Consensus 149 ~v~~~~~--~g~~----~--~~---------e~~~~~a~~~~~~G~~~~K----iKvg-------------~--~~d~~~ 192 (393)
T 1wuf_A 149 SIKVGVS--IGLQ----Q--NV---------ETLLQLVNQYVDQGYERVK----LKIA-------------P--NKDIQF 192 (393)
T ss_dssp EEEBCEE--ECCC----S--CH---------HHHHHHHHHHHHHTCCEEE----EECB-------------T--TBSHHH
T ss_pred cceeeEE--eCCC----C--CH---------HHHHHHHHHHHHHhhHhhe----eccC-------------h--HHHHHH
Confidence 7888653 2111 0 11 2224455555555565554 2322 1 234566
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCH
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDW 309 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~ 309 (445)
++++|+++ +++.|++|+| +.||.+++ ++ .+.+++|++.|||||++++|+
T Consensus 193 v~avr~a~------~~~~l~vDaN-----------------------~~~~~~~a-~~-~~~l~~~~i~~iEqP~~~~d~ 241 (393)
T 1wuf_A 193 VEAVRKSF------PKLSLMADAN-----------------------SAYNREDF-LL-LKELDQYDLEMIEQPFGTKDF 241 (393)
T ss_dssp HHHHHTTC------TTSEEEEECT-----------------------TCCCGGGH-HH-HHTTGGGTCSEEECCSCSSCS
T ss_pred HHHHHHHc------CCCEEEEECC-----------------------CCCCHHHH-HH-HHHHHhCCCeEEECCCCCcCH
Confidence 65554432 5899999993 56788888 77 467899999999999999999
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
++|++|+++++ +||++||+. +++++++++++.+++|++|||++++||||++++++++|+++|+++++++ +.|+.++
T Consensus 242 ~~~~~l~~~~~--ipIa~dE~~-~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~-~~es~i~ 317 (393)
T 1wuf_A 242 VDHAWLQKQLK--TRICLDENI-RSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVWCGG-MLEAGVG 317 (393)
T ss_dssp HHHHHHHTTCS--SEEEECTTC-CSHHHHHHHHHHTCCSEEEECTGGGTSHHHHHHHHHHHHHTTCEEEECC-CCCCHHH
T ss_pred HHHHHHHHhCC--CCEEECCCc-CCHHHHHHHHHhCCCCEEEeChhhhCCHHHHHHHHHHHHHcCCeEEecC-CcccHHH
Confidence 99999999988 999999985 6799999999999999999999999999999999999999999998877 5688877
Q ss_pred HHHHHHhh
Q 043137 390 FIADLSVG 397 (445)
Q Consensus 390 ~~~~la~a 397 (445)
.+++++++
T Consensus 318 ~aa~~hla 325 (393)
T 1wuf_A 318 RAHNIALA 325 (393)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666555
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=380.28 Aligned_cols=303 Identities=21% Similarity=0.279 Sum_probs=235.1
Q ss_pred eEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+.. +.+ +++++|+|+||+|++|||+++.. +.|++++..++...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G~~G~GE~~~~---------------~~~~~~~~~~~~~~ 65 (369)
T 2p8b_A 1 MKITAIHLYAIRLPLRNPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVAD---------------DHVTGESWESTFHT 65 (369)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCC---------------HHHHSCCHHHHHHH
T ss_pred CEEEEEEEEEEeccccCCeEecceeEEeeeEEEEEEEECCCCEEEEEecCC---------------CCcCCCCHHHHHHH
Confidence 8999999887732 222 35789999999999999976532 12456667888888
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
+++.++|.|+|+||.+++.+|+.|. .... ...+|++|||+||||+.||.+|+|||+||| |..+++
T Consensus 66 i~~~l~~~l~g~d~~~~~~~~~~l~-~~~~-----------~~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~~~~~ 130 (369)
T 2p8b_A 66 LKHTLTPALIGQNPMNIEKIHDMMD-NTIY-----------GVPTAKAAIDIACFDIMGKKLNQPVYQLIG---GRYHEE 130 (369)
T ss_dssp HHHTHHHHHTTCCTTCHHHHHHHHH-HHCS-----------CCHHHHHHHHHHHHHHHHHHTTSBGGGGTT---CCCCSC
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHH-HHhc-----------CChHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCCCCc
Confidence 8888999999999999999999998 3321 125799999999999999999999999999 876677
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGL 230 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l 230 (445)
+|++. .++++ +.+ ...+++.+...++|+.+| .|.| . +.+.+.+.+
T Consensus 131 v~~~~--~i~~~-------~~~---------~~~~~a~~~~~~Gf~~iK----ik~g-------~------~~~~~~e~v 175 (369)
T 2p8b_A 131 FPVTH--VLSIA-------DPE---------NMAEEAASMIQKGYQSFK----MKVG-------T------NVKEDVKRI 175 (369)
T ss_dssp EECCE--EECSC-------CHH---------HHHHHHHHHHHTTCCEEE----EECC-------S------CHHHHHHHH
T ss_pred eeeeE--EecCC-------ChH---------HHHHHHHHHHHcCcCEEE----EEeC-------C------CHHHHHHHH
Confidence 88743 33322 111 223444444444454443 3322 1 223345566
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHH-HHHHHhhccCCeeeEECCCCcCCH
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALK-DLYKSFISDYPIVSIEDPFDQDDW 309 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai-~~~~~~l~~~~i~~iEdP~~~~D~ 309 (445)
+++|+++ | +++.|++|+| ++||.++++ ++ .+.++++++.|||||++++|+
T Consensus 176 ~avr~a~---g--~~~~l~vDan-----------------------~~~~~~~a~~~~-~~~l~~~~i~~iEqP~~~~d~ 226 (369)
T 2p8b_A 176 EAVRERV---G--NDIAIRVDVN-----------------------QGWKNSANTLTA-LRSLGHLNIDWIEQPVIADDI 226 (369)
T ss_dssp HHHHHHH---C--TTSEEEEECT-----------------------TTTBSHHHHHHH-HHTSTTSCCSCEECCBCTTCH
T ss_pred HHHHHHh---C--CCCeEEEECC-----------------------CCCCHHHHHHHH-HHHHHhCCCcEEECCCCcccH
Confidence 6555554 5 5899999993 567888998 88 456899999999999999999
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+++++|+++++ +||++||+. +++++++++++.+++|+++||++++||+|++++++++|+++|++++++| +.|+.++
T Consensus 227 ~~~~~l~~~~~--iPI~~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~-~~es~i~ 302 (369)
T 2p8b_A 227 DAMAHIRSKTD--LPLMIDEGL-KSSREMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGS-MVESSVA 302 (369)
T ss_dssp HHHHHHHHTCC--SCEEESTTC-CSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECC-SSCCHHH
T ss_pred HHHHHHHHhCC--CCEEeCCCC-CCHHHHHHHHHhCCCCEEEeecchhCCHHHHHHHHHHHHHcCCcEEecC-CCccHHH
Confidence 99999999988 999999985 7799999999999999999999999999999999999999999998877 5789888
Q ss_pred HHHHHHhhhcCCcc
Q 043137 390 FIADLSVGLATGQI 403 (445)
Q Consensus 390 ~~~~la~a~~~~~~ 403 (445)
.+++++++...+..
T Consensus 303 ~~a~~~laa~~~~~ 316 (369)
T 2p8b_A 303 SSAGFHVAFSKKII 316 (369)
T ss_dssp HHHHHHHHTTCTTE
T ss_pred HHHHHHHHHcCCCC
Confidence 77776666544433
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=385.75 Aligned_cols=315 Identities=14% Similarity=0.158 Sum_probs=222.8
Q ss_pred ceEEEEEEEEEEecC-------CC--C---ceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHH
Q 043137 2 AITITAVKARQIFDS-------RG--N---PTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVS 69 (445)
Q Consensus 2 ~mkI~~v~~~~v~~~-------~g--~---~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~ 69 (445)
+|||++|+++.+..+ .| . ..++|+|+||+|++|+|+++. + .....
T Consensus 22 ~mkI~~i~~~~v~~P~~~~~~~~g~~~~~~~~~~V~v~td~G~~G~GE~~g--------------------~---~~v~~ 78 (441)
T 3vc5_A 22 SMLIREVRVTPVAFRDPPLLNAAGVHQPWALRTIVEVVTDEGITGLGETYG--------------------D---LAHLE 78 (441)
T ss_dssp -CBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTCCEEEEEEEC--------------------C---HHHHH
T ss_pred CcEEEEEEEEEEecCCcccccccCccccceeEEEEEEEECCCCEEEEeCCC--------------------h---HHHHH
Confidence 589999999988533 11 1 237999999999999997642 1 12233
Q ss_pred HHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccc------cchhhHHHHHHHHHHHHHHhcCCchhhhhccc
Q 043137 70 NVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQK------LGANAILAVSLAVCKAGAHVKKIPLYKHIAEL 143 (445)
Q Consensus 70 ~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~------~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~ 143 (445)
.| +.++|.|+|+||.+++++|+.|++.+.+....-.+|..+ +...|++|||+||||+.||.+|+|||+|||
T Consensus 79 ~i-~~l~p~LiG~d~~~~e~i~~~l~~~~~~~~~~~~~g~~G~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLG-- 155 (441)
T 3vc5_A 79 QV-RAAAARLPGLDVYALHRIYRRVADVVGANIVTDMHGLTGSSSRVKTVDRVFAAFEVACLDIQGKAAGRPVADLLG-- 155 (441)
T ss_dssp HH-HHHHHTCTTSBTTCHHHHHHHHHHHHTTCCCCCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT--
T ss_pred HH-HHHHHHhCCCChhHHHHHHHHHHHhhhccccccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhC--
Confidence 45 469999999999999999999995432210000011222 334799999999999999999999999999
Q ss_pred cCCCcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHH-HHHHHHHHHHhhcCCCCcccCCCCCCCCC
Q 043137 144 SGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVE-VYHHLKAVIKKKYGQDATNVGDEGGFAPN 222 (445)
Q Consensus 144 ~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~-~~~~~k~~lk~k~G~~~~~~~~~g~~~~~ 222 (445)
|..++++|++.|.......+ ++. .......+..+++.++++.+...+ +|+++| .|.|. .+
T Consensus 156 -G~~rd~v~~~a~~~~~~~~~-~g~-~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~K----lKvG~------------~~ 216 (441)
T 3vc5_A 156 -GKVRDAVPYSAYLFYKWAGH-PGK-PEDRFGPALDPDGIVAQARLLIGEYGFRSIK----LKGGV------------FP 216 (441)
T ss_dssp -CCSSSEEEBCEEEECBCSBC-TTS-CBCTTCCBCSHHHHHHHHHHHHHHHCCSSEE----EECSS------------SC
T ss_pred -CCCCCeEEEEEeeccccccC-CCc-cccccccCCCHHHHHHHHHHHHHhcCCCEEE----EccCC------------CC
Confidence 98888999865542110000 000 000000001122334445444332 565543 44331 11
Q ss_pred ccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEEC
Q 043137 223 IQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIED 302 (445)
Q Consensus 223 ~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEd 302 (445)
.+.+.++++++|+++ +++.|++|+ |+.||.++++++ .+.++++ +.||||
T Consensus 217 ~~~Di~rv~avRea~------pd~~L~vDa-----------------------N~~w~~~~Ai~~-~~~L~~~-l~~iEe 265 (441)
T 3vc5_A 217 PEQEAEAIQALRDAF------PGLPLRLDP-----------------------NAAWTVETSIRV-GRALDGV-LEYLED 265 (441)
T ss_dssp HHHHHHHHHHHHHHS------TTCCEEEEC-----------------------TTCSCHHHHHHH-HHHTTTT-CSEEEC
T ss_pred HHHHHHHHHHHHHhC------CCCcEeccC-----------------------CCCCCHHHHHHH-HHHHHHH-HHHhhc
Confidence 233445555555443 589999999 478999999987 4568999 999999
Q ss_pred CCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC
Q 043137 303 PFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 303 P~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~ 382 (445)
|++ |++++++|+++++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|+++++ |.
T Consensus 266 P~~--~~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~l~~~a~dii~~d~~~~GGitea~kia~lA~~~gv~v~~-h~ 339 (441)
T 3vc5_A 266 PTP--GIDGMARVAAEVP--MPLATNMCV-VTPEHLPAAVERRPIGVLLIDHHYWGGLVRSAHIATLCATFGIELSM-HS 339 (441)
T ss_dssp CSS--SHHHHHHHHTTSS--SCEEESSSC-CSGGGHHHHHHHCCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEE-CC
T ss_pred cCC--CHHHHHHHHhcCC--CCEEeCCCC-CCHHHHHHHHHhCCCCEEeechhhcCCHHHHHHHHHHHHHcCCEEEe-cC
Confidence 985 8999999999998 999999985 67999999999999999999999999999999999999999999755 55
Q ss_pred CCCChhhH--HHHHHhhh
Q 043137 383 SGETEDTF--IADLSVGL 398 (445)
Q Consensus 383 ~~et~~~~--~~~la~a~ 398 (445)
+.++.++. ++||++++
T Consensus 340 ~~e~~i~~aa~~hlaaa~ 357 (441)
T 3vc5_A 340 NSHLGISLAAMTHLAAAT 357 (441)
T ss_dssp CSCCHHHHHHHHHHHHTC
T ss_pred CcccHHHHHHHHHHHHhC
Confidence 67777664 45666554
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-46 Score=380.04 Aligned_cols=301 Identities=20% Similarity=0.257 Sum_probs=231.1
Q ss_pred CceEEEEEEEEEEecCC--------C----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHH
Q 043137 1 MAITITAVKARQIFDSR--------G----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAV 68 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~~--------g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~ 68 (445)
|+|||++|+++.+..+. + +++++|+|+||+|++|||++...+ + +|++++..++.
T Consensus 1 m~MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~-----------~---~~~~~~~~~~~ 66 (397)
T 2qde_A 1 MSLKITKVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTS-----------S---WYRGETQDSIT 66 (397)
T ss_dssp --CCEEEEEEEEEEECCCC-----------EEEEEEEEEETTSCEEEEECCCCC-----------T---TTTCCCHHHHH
T ss_pred CCCEEEEEEEEEEeeeccCCeEeccceEeeCceEEEEEEECCCCEEEEEEeccc-----------C---ccCCCCHHHHH
Confidence 78999999998885331 2 357899999999999999764311 0 25677778888
Q ss_pred HHHHHhHhh-hhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCC
Q 043137 69 SNVNAIIGP-ALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNK 147 (445)
Q Consensus 69 ~~i~~~l~p-~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~ 147 (445)
..+++.++| .|+|+||.+++.+|+.|. ... . + ..+|++|||+||||+.||.+|+|||+||| |..
T Consensus 67 ~~i~~~l~~~~l~G~d~~~~~~l~~~l~-~~~---~------~--~~~a~~aid~AlwDl~ak~~g~Pl~~llG---g~~ 131 (397)
T 2qde_A 67 SMICDFFAPKVLLGEDPTKIEKIVGRMD-ILT---R------D--NNQAKATVDFALHDLVGKRFGVPVYQLLG---GKT 131 (397)
T ss_dssp HHHHHTHHHHTTTTCCTTCHHHHHHHHH-HHC---S------S--CHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCS
T ss_pred HHHHHhhhhHhhcCCChHhHHHHHHHhh-hhh---c------c--chhHHHHHHHHHHHHHHHHhCCcHHHHhC---CCC
Confidence 888888999 999999999999999885 321 1 1 36899999999999999999999999999 976
Q ss_pred cceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChH
Q 043137 148 NLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENK 227 (445)
Q Consensus 148 ~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~ 227 (445)
++.+|++ .+++.+ +. +...+++.+...++|+.+| .|.|. +++.+.
T Consensus 132 ~~~vp~~--~~~g~~-------~~---------e~~~~~a~~~~~~Gf~~vK----ik~g~-------------~~~~~~ 176 (397)
T 2qde_A 132 IERIPLG--LVLGAG-------EP---------EAVAEEALAVLREGFHFVK----LKAGG-------------PLKADI 176 (397)
T ss_dssp CSSEEBC--EECCCS-------CH---------HHHHHHHHHHHHHTCSCEE----EECCS-------------CHHHHH
T ss_pred CCCcceE--EECCCC-------CH---------HHHHHHHHHHHHhhhhhee----ecccC-------------CHHHHH
Confidence 6677764 333111 11 1223445444444554443 33321 223345
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcC
Q 043137 228 EGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQD 307 (445)
Q Consensus 228 ~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~ 307 (445)
+.++++|+++ | +++.|++|+| ++||.++++++ .+.++++++.|||||++++
T Consensus 177 e~v~avR~a~---g--~d~~l~vDan-----------------------~~~~~~~a~~~-~~~l~~~~i~~iEqP~~~~ 227 (397)
T 2qde_A 177 AMVAEVRRAV---G--DDVDLFIDIN-----------------------GAWTYDQALTT-IRALEKYNLSKIEQPLPAW 227 (397)
T ss_dssp HHHHHHHHHH---C--TTSCEEEECT-----------------------TCCCHHHHHHH-HHHHGGGCCSCEECCSCTT
T ss_pred HHHHHHHHhh---C--CCCEEEEECC-----------------------CCCCHHHHHHH-HHHHHhCCCCEEECCCChh
Confidence 5565555554 5 5899999993 57889999988 5578999999999999999
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCCh
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETE 387 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~ 387 (445)
|++++++|+++++ +||++||+. .++++++++++.+++|++++|++++||||++++++++|+++|+++++++ +.|+.
T Consensus 228 ~~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~-~~es~ 303 (397)
T 2qde_A 228 DLDGMARLRGKVA--TPIYADESA-QELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGC-MVGSG 303 (397)
T ss_dssp CHHHHHHHHTTCS--SCEEESTTC-CSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCCEEECC-CSCCH
T ss_pred hHHHHHHHHhhCC--CCEEEeCCc-CCHHHHHHHHHcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCeEEEec-CcccH
Confidence 9999999999988 999999985 5699999999999999999999999999999999999999999987765 46887
Q ss_pred hhH--HHHHHhhh
Q 043137 388 DTF--IADLSVGL 398 (445)
Q Consensus 388 ~~~--~~~la~a~ 398 (445)
++. .+||+.++
T Consensus 304 ig~aa~~hlaa~~ 316 (397)
T 2qde_A 304 LEASPAAHLLAAN 316 (397)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 665 45555544
|
| >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-46 Score=378.03 Aligned_cols=276 Identities=20% Similarity=0.212 Sum_probs=209.7
Q ss_pred ceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhc
Q 043137 20 PTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLD 99 (445)
Q Consensus 20 ~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~ 99 (445)
.+++|+|+||+|++|||++..+ ..+...+++.|+|.|+|+||.+++++|+.|++...
T Consensus 59 ~~v~V~v~td~G~~G~Ge~~~g-----------------------~~~~~~i~~~l~p~LiG~dp~~ie~i~~~m~~~~~ 115 (404)
T 3ekg_A 59 GTLVVEIEASDGNVGFAVTTGG-----------------------EPAAYIVEKHLARFLEGARVTDIERIWDQMYNSTL 115 (404)
T ss_dssp CEEEEEEEETTSCEEEEEEECH-----------------------HHHHHHHHHTTHHHHTTSBTTCHHHHHHHHHHHHG
T ss_pred cEEEEEEEECCCCEEEEeCCCc-----------------------HHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhh
Confidence 3489999999999999875421 22344677889999999999999999999984321
Q ss_pred cCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeeccC
Q 043137 100 GTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPV 179 (445)
Q Consensus 100 ~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~ 179 (445)
++|++++..+|+|||||||||+.||.+|+|||+||| |+.++++|+|. + |. .
T Consensus 116 ------~~g~~G~~~~A~sAID~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~y~--~--g~-------~--------- 166 (404)
T 3ekg_A 116 ------YYGRKGLVINTISGVDLALWDLLGKVRREPVHQLLG---GAVRDELQFYA--T--GA-------R--------- 166 (404)
T ss_dssp ------GGCSSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSSSEEEEEE--E--SS-------C---------
T ss_pred ------hcCCCcchHHHHHHHHHHHHHHHHHHhCCCHHHHcC---CCCCCeeEEec--C--CC-------C---------
Confidence 122344456799999999999999999999999999 98888888743 2 11 0
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEecccccccc
Q 043137 180 GASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYG 259 (445)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~ 259 (445)
.+.+.+ ++|+++| .|+|... . .| ..+++.+.++++++|+++ | +++.|++|+
T Consensus 167 ----~~~~~~---~Gf~~~K----~Kv~~g~-~---~g--~~~~~~di~~v~avRea~---G--~~~~L~vDa------- 217 (404)
T 3ekg_A 167 ----PDLAQK---MGFIGGK----MPLHHGP-S---EG--EEGLKKNLEELATMRERV---G--PDFWLMFDC------- 217 (404)
T ss_dssp ----HHHHHH---TTCSEEE----EECCCCG-G---GH--HHHHHHHHHHHHHHHHHH---C--SSSEEEEEC-------
T ss_pred ----HHHHHH---cCCCEEE----EecCCCC-c---cc--cccHHHHHHHHHHHHHHh---C--CCCeEEecC-------
Confidence 112222 2455443 3432100 0 00 011233455666666555 6 689999999
Q ss_pred CCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHH
Q 043137 260 SDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVE 339 (445)
Q Consensus 260 ~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~ 339 (445)
|+.||.++|+++ .+.+++|++.|||||++++|++++++|+++++.++||++||+. .++++++
T Consensus 218 ----------------N~~w~~~~A~~~-~~~Le~~~l~~iEeP~~~~d~~~~a~l~~~~~~pi~Ia~gE~~-~~~~~~~ 279 (404)
T 3ekg_A 218 ----------------WMSLDLNYATRL-ARGAREYGLKWIEEALPPDDYWGYAELRRNAPTGMMVTTGEHE-ATRWGFR 279 (404)
T ss_dssp ----------------TTCCCHHHHHHH-HHHHGGGTCCEEECCSCTTCHHHHHHHHHHSCTTCEEEECTTC-CHHHHHH
T ss_pred ----------------CCCCCHHHHHHH-HHHHhhcCCcEEecCCCcccHHHHHHHHHhcCCCeEEEecCcc-CCHHHHH
Confidence 467899999988 5568999999999999999999999999998844569999985 4599999
Q ss_pred HHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhc
Q 043137 340 KAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLA 399 (445)
Q Consensus 340 ~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~ 399 (445)
++++.+++|++|+|++++||||++++++++|+++|+++++ |.++ .+.+||++++.
T Consensus 280 ~li~~~a~dii~~d~~~~GGitea~kia~lA~a~gv~v~~-h~~~----~a~~hl~aa~p 334 (404)
T 3ekg_A 280 MLLEMGCCDIIQPDVGWCGGVTELLKISALADAHNALVVP-HGSS----VYSYHFVATRQ 334 (404)
T ss_dssp HHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHTTCEECC-CCCT----HHHHHHHTTCT
T ss_pred HHHHcCCCCeEecChhhcCCccHHHHHHHHHHHcCCEEEe-cCcH----HHHHHHHHhCC
Confidence 9999999999999999999999999999999999999854 5332 36788887764
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-46 Score=377.26 Aligned_cols=304 Identities=12% Similarity=0.144 Sum_probs=225.6
Q ss_pred CceEEEEEEEEEEec-------CCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHH
Q 043137 1 MAITITAVKARQIFD-------SRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNA 73 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~-------~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~ 73 (445)
|.|||++|+++.+.. +.++++++|+|+||+|++|||+++..+ +. .......|++
T Consensus 9 ~~MkI~~i~~~~~~p~~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~----------------~~---~~~~~~~i~~ 69 (391)
T 2qgy_A 9 SIGKLSRLKIWITDNHLSDDQWSNTKKFIIIKITTEDGIEGWGEAFSIN----------------FR---EKGIAIIIKE 69 (391)
T ss_dssp CCCCEEEEEEEEECCCBCGGGCSBCCCCEEEEEEETTCCEEEEEECCCT----------------TT---HHHHHHHHHH
T ss_pred CCCEEEEEEEEEecCccccccccCCCcEEEEEEEECCCCEEEecccCCC----------------CC---hHHHHHHHHH
Confidence 679999999999952 124578999999999999999765421 11 1233445666
Q ss_pred hHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeee
Q 043137 74 IIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPV 153 (445)
Q Consensus 74 ~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~ 153 (445)
++|.|+|+||.+++.+|+.|. .+... |..+.+ .+|++|||+||||+.||.+|+|||+||| |..+..+|+
T Consensus 70 -l~p~l~G~d~~~~~~i~~~l~-~~~~~-----~~g~~~-~~a~~aid~AlwDl~ak~~g~Pl~~llG---g~~~~~vp~ 138 (391)
T 2qgy_A 70 -LFREISNIPNLSIKSFYNKIS-LLSDG-----HRGLDF-SSATSAIEIALWDISGKLKNLPLNSLLT---KSPKPNVPI 138 (391)
T ss_dssp -HHHHHTTCTTCCHHHHHHHHH-HHHTT-----CCCHHH-HHHHHHHHHHHHHHHHHHHTSBHHHHHC---SSCCSEEEE
T ss_pred -HHHHhcCCChhHHHHHHHHHH-hhhhh-----ccCchH-HHHHHHHHHHHHHHHHHHhCCcHHHHcC---CCcCCCcce
Confidence 999999999999999999998 42211 112234 6899999999999999999999999999 876666666
Q ss_pred eeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHH
Q 043137 154 PAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELL 233 (445)
Q Consensus 154 ~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l 233 (445)
|+ +|+.+.. .+. +...+++.+...++|+.+| .|.| +.+ .+.+.+.++++
T Consensus 139 --~~--~g~~~~~--~~~---------~~~~~~a~~~~~~Gf~~vK----ik~g-----------~~~-~~~~~e~v~av 187 (391)
T 2qgy_A 139 --YA--TCWSDLK--KDT---------NDYLRQIEKFYGKKYGGIK----IYPM-----------LDS-LSISIQFVEKV 187 (391)
T ss_dssp --EE--ECCCSSC--CCH---------HHHHHHHHHHHHTTCSCEE----ECCC-----------CSS-HHHHHHHHHHH
T ss_pred --EE--ecccCCC--CCH---------HHHHHHHHHHHHcCCCEEE----EccC-----------CCh-HHHHHHHHHHH
Confidence 43 2222100 011 1223444444334444433 2222 110 12334555555
Q ss_pred HHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHH
Q 043137 234 NTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYA 313 (445)
Q Consensus 234 ~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~ 313 (445)
|+++ | +++.|++|+| ++||.+++++++ +.++++++.|||||++++|+++++
T Consensus 188 R~a~---G--~d~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~i~~iEqP~~~~d~~~~~ 238 (391)
T 2qgy_A 188 REIV---G--DELPLMLDLA-----------------------VPEDLDQTKSFL-KEVSSFNPYWIEEPVDGENISLLT 238 (391)
T ss_dssp HHHH---C--SSSCEEEECC-----------------------CCSCHHHHHHHH-HHHGGGCCSEEECSSCTTCHHHHH
T ss_pred HHHh---C--CCCEEEEEcC-----------------------CCCCHHHHHHHH-HHHHhcCCCeEeCCCChhhHHHHH
Confidence 5554 6 5899999993 578899999984 568999999999999999999999
Q ss_pred HHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCC-hhhH--
Q 043137 314 KLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGET-EDTF-- 390 (445)
Q Consensus 314 ~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et-~~~~-- 390 (445)
+|+++++ +||++||+. .++++++++++.+++|++++|++++||+|++++++++|+++|++++++++ ++ .++.
T Consensus 239 ~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~~--~~~~i~~aa 313 (391)
T 2qgy_A 239 EIKNTFN--MKVVTGEKQ-SGLVHFRELISRNAADIFNPDISGMGGLIDIIEISNEASNNGIFISPHCW--NSMSVSASA 313 (391)
T ss_dssp HHHHHCS--SCEEECTTC-CSHHHHHHHHHTTCCSEECCBTTTSSCHHHHHHHHHHHHHTTCEECCBCC--SCTTHHHHH
T ss_pred HHHhhCC--CCEEEcCCc-CCHHHHHHHHHcCCCCEEEECcchhCCHHHHHHHHHHHHHCCCEEeccCC--CCcHHHHHH
Confidence 9999998 999999985 56999999999999999999999999999999999999999999877664 56 6654
Q ss_pred HHHHHhhhc
Q 043137 391 IADLSVGLA 399 (445)
Q Consensus 391 ~~~la~a~~ 399 (445)
.+||+.+++
T Consensus 314 ~~hlaaa~~ 322 (391)
T 2qgy_A 314 MLHVCSSIP 322 (391)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHhCC
Confidence 456655543
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=378.55 Aligned_cols=296 Identities=18% Similarity=0.212 Sum_probs=224.8
Q ss_pred eEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+.. +.+ +..++|+|+||+|++|||++.... . +...+...
T Consensus 27 mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~------------------~-~~~~~~~~ 87 (383)
T 3toy_A 27 AAITGVTARAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVTGHSYLFAYT------------------R-LALKPLVH 87 (383)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEESSSCEEEEEEECSS------------------G-GGHHHHHH
T ss_pred CEEEEEEEEEEeccCCCcccCccccccceeEEEEEEEECCCCEEEEEeeCCC------------------C-chHHHHHH
Confidence 8999999987742 222 356899999999999999754311 0 12334556
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
+.+.++|.|+|+||.+++ +|+.|.+.+.. .|++++..+|++|||+||||+.||.+|+|||+||| |.. ++
T Consensus 88 i~~~l~p~l~G~d~~~~e-~~~~l~~~~~~------~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLG---g~~-~~ 156 (383)
T 3toy_A 88 LVEDIGRELAGKALVPVD-LMKAMDAKFRL------LGWQGLVGMAVSGLDMAFWDALGQLAGKPVVELLG---GSA-RP 156 (383)
T ss_dssp HHHHHHHHTTTCBCCHHH-HHHHHHHHTTT------TCCSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCC-CC
T ss_pred HHHHHHHHhCCCCCCcHH-HHHHHHHHHhh------cCCcchHHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCC-Cc
Confidence 677899999999999999 99999843321 12234446899999999999999999999999999 864 56
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHH-HHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVE-VYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEG 229 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~-~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~ 229 (445)
+|+ |++ +|.. + ++..++++.+...+ +|+++| .|+|. .+.+.+.++
T Consensus 157 v~~--y~s--~g~~-----~---------~e~~~~~a~~~~~~~G~~~~K----lKvG~------------~~~~~d~~~ 202 (383)
T 3toy_A 157 IPA--YDS--YGVL-----D---------ARDDERTLRTACDEHGFRAIK----SKGGH------------GDLATDEAM 202 (383)
T ss_dssp EEE--EEE--CSSC-----C---------HHHHHHHHHHHHHTSCCCEEE----EECCS------------SCHHHHHHH
T ss_pred eEE--eEe--cCCC-----C---------HHHHHHHHHHHHHccCCcEEE----EecCC------------CCHHHHHHH
Confidence 766 443 2321 1 12234455554444 555543 44431 123344566
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCH
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDW 309 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~ 309 (445)
++++|+++ | +++.|++|+ |++||.++++++ .+.++++++.|||||++++|+
T Consensus 203 v~avR~a~---G--~~~~l~vDa-----------------------N~~~~~~~A~~~-~~~l~~~~i~~iEeP~~~~d~ 253 (383)
T 3toy_A 203 IKGLRALL---G--PDIALMLDF-----------------------NQSLDPAEATRR-IARLADYDLTWIEEPVPQENL 253 (383)
T ss_dssp HHHHHHHH---C--TTSEEEEEC-----------------------TTCSCHHHHHHH-HHHHGGGCCSEEECCSCTTCH
T ss_pred HHHHHHHh---C--CCCeEEEeC-----------------------CCCCCHHHHHHH-HHHHHhhCCCEEECCCCcchH
Confidence 66666555 6 589999999 367899999987 566899999999999999999
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+++++|+++++ +||++||+. .++++++++++.+++|++|||++++||||++++++++|+++|+++++++ + ..
T Consensus 254 ~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~h~-~----~~ 325 (383)
T 3toy_A 254 SGHAAVRERSE--IPIQAGENW-WFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNVAGQADAASIPMSSHI-L----PE 325 (383)
T ss_dssp HHHHHHHHHCS--SCEEECTTC-CHHHHHHHHHHHTCCSEECCCTTTTTHHHHHHHHHHHHHHHTCCBCCCS-C----HH
T ss_pred HHHHHHHhhcC--CCEEeCCCc-CCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEeecC-H----HH
Confidence 99999999998 999999985 6699999999999999999999999999999999999999999986544 3 23
Q ss_pred HHHHHHhhhc
Q 043137 390 FIADLSVGLA 399 (445)
Q Consensus 390 ~~~~la~a~~ 399 (445)
+.+|++.++.
T Consensus 326 a~lhl~aa~p 335 (383)
T 3toy_A 326 ASAHVLPVTP 335 (383)
T ss_dssp HHHHHGGGCT
T ss_pred HHHHHHHhCC
Confidence 5678877654
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-47 Score=383.09 Aligned_cols=302 Identities=18% Similarity=0.153 Sum_probs=224.4
Q ss_pred eEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+.. +.+ +..++|+|+||+|++|||++..+ + .+...
T Consensus 24 MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~g--------------------~---~~~~~ 80 (398)
T 4dye_A 24 MKITDVDVWVVNLPLVNPFTSSFETKTGETRTVVRVRTDSGVEGWGETMWG--------------------A---PVAAI 80 (398)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECS--------------------H---HHHHH
T ss_pred ceEEEEEEEEEeecccccccccccccccceEEEEEEEECCCCEEEEeecCc--------------------h---HHHHH
Confidence 7999999987742 333 34689999999999999976431 1 12334
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
+ +.++|.|+|+||.+++.+|+.|.+... .+ +..+.+|++|||+||||+.||.+|+|||+||| |..+++
T Consensus 81 i-~~l~p~liG~d~~~~~~~~~~l~~~~~------~~--g~~~~~A~said~ALwDl~gK~~g~Pl~~LLG---g~~r~~ 148 (398)
T 4dye_A 81 V-RRMAPDLIGTSPFALEAFHRKQHMVPF------FY--GYLGYAAIAAVDVACWDAMGKATGQSVTDLLG---GAVRDE 148 (398)
T ss_dssp H-HHHHHHHTTCCTTCHHHHHHHTTTHHH------HH--HHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCSCSE
T ss_pred H-HHHHHHHcCCCccCHHHHHHHHHhhhh------hh--ccccHHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCcCCe
Confidence 5 679999999999999999998862110 01 11235899999999999999999999999999 987788
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHH-HHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVE-VYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEG 229 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~-~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~ 229 (445)
+|+++ ++. ....++..... .+++.++++.+...+ +|+++| .|+| .+.+.+.++
T Consensus 149 v~~y~--s~~-~~~~~g~~~~~------~~e~~~~~a~~~~~~~G~~~~K----~KvG-------------~~~~~d~~~ 202 (398)
T 4dye_A 149 VPITA--LIT-RADAPGATPAD------LPKAMAEHAVRVVEEGGFDAVK----LKGT-------------TDCAGDVAI 202 (398)
T ss_dssp EEBEE--EEC-GGGSTTCCTTT------HHHHHHHHHHHHHHHHCCSEEE----EECC-------------SCHHHHHHH
T ss_pred EEEEE--EEe-ccccCCcccCC------CHHHHHHHHHHHHHhcCCCEEE----EecC-------------CCHHHHHHH
Confidence 88754 221 10000000000 012233444444444 555543 3433 112334555
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCH
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDW 309 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~ 309 (445)
++++|+++ +++.|++|+ |+.||.++++++ .+.++++++.|||||++ |+
T Consensus 203 v~avR~~~------~~~~l~vDa-----------------------N~~w~~~~A~~~-~~~l~~~~i~~iEqP~~--d~ 250 (398)
T 4dye_A 203 LRAVREAL------PGVNLRVDP-----------------------NAAWSVPDSVRA-GIALEELDLEYLEDPCV--GI 250 (398)
T ss_dssp HHHHHHHC------TTSEEEEEC-----------------------TTCSCHHHHHHH-HHHHGGGCCSEEECCSS--HH
T ss_pred HHHHHHhC------CCCeEEeeC-----------------------CCCCCHHHHHHH-HHHHhhcCCCEEcCCCC--CH
Confidence 55554443 589999999 367899999987 56689999999999999 89
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+++++|+++++ +||++||+. .++++++++++.+++|++|||++++||||++++++++|+++|+++++++ +.|++++
T Consensus 251 ~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~-~~e~~i~ 326 (398)
T 4dye_A 251 EGMAQVKAKVR--IPLCTNMCV-VRFEDFAPAMRLNAVDVIHGDVYKWGGIAATKALAAHCETFGLGMNLHS-GGELGIA 326 (398)
T ss_dssp HHHHHHHHHCC--SCEEESSSC-CSGGGHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECC-SCCCHHH
T ss_pred HHHHHHHhhCC--CCEEeCCcC-CCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEcC-CcchHHH
Confidence 99999999998 999999985 6799999999999999999999999999999999999999999987755 7888888
Q ss_pred HHHHHHhhhcCC
Q 043137 390 FIADLSVGLATG 401 (445)
Q Consensus 390 ~~~~la~a~~~~ 401 (445)
.+++++++...+
T Consensus 327 ~aa~l~laaa~p 338 (398)
T 4dye_A 327 TAAHLAVVSSTP 338 (398)
T ss_dssp HHHHHHHHHTCT
T ss_pred HHHHHHHHhcCC
Confidence 777777665433
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-46 Score=379.60 Aligned_cols=299 Identities=18% Similarity=0.194 Sum_probs=223.9
Q ss_pred eEEEEEEEEEEecC--------CC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFDS--------RG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~~--------~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+..+ .+ +..++|+|+||+|++|||++.... .+. +.+... ..
T Consensus 10 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~-~~~--------------~~~~~~--~~ 72 (392)
T 3ddm_A 10 ITPARVRAHVFRYPVSTPVKTSFGTMHDRPAVLVEVEDSDGAVGWGEVWCNF-PAC--------------GAEHRA--RL 72 (392)
T ss_dssp BCCCEEEEEEEEEEC-----------CEEEEEEEEEECTTSCEEEEECCCCS-STT--------------HHHHHH--HH
T ss_pred CEEEEEEEEEEeccCCCcccCcCceeecceEEEEEEEECCCCEEEEEeccCC-CCC--------------chHHHH--HH
Confidence 89999999887532 22 356899999999999999763110 010 111222 14
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHH----hccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCC
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQ----LDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGN 146 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~----l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~ 146 (445)
+++.++|.|+|+||.+++++|+.|.+. ... .|..+...+|+||||+||||+.||.+|+|||+||| |.
T Consensus 73 i~~~l~p~liG~d~~~~~~~~~~l~~~~~~~~~~------~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLG---g~ 143 (392)
T 3ddm_A 73 VETVLAPLLTARAFADPAQAFAHLEARTAVLAIQ------TGEPGPLAQAIAGLDIALCDLAARRAGQPLWAWLG---GS 143 (392)
T ss_dssp HHHTHHHHHTTSCBSSHHHHHHHHHHTTHHHHHH------HTCHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTT---CS
T ss_pred HHHHHHHHhCCCCcCCHHHHHHHHHhhhhhhhhh------cCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhC---CC
Confidence 577899999999999999999999832 110 01122346899999999999999999999999999 87
Q ss_pred CcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCh
Q 043137 147 KNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQEN 226 (445)
Q Consensus 147 ~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~ 226 (445)
. +++|++. + |. .. +...+++.+...++|+.+| .|+|. +.+.+
T Consensus 144 ~-~~v~~y~--~---g~------~~---------e~~~~~a~~~~~~G~~~iK----lK~g~-------------~~~~d 185 (392)
T 3ddm_A 144 G-DRIGVYA--S---GI------NP---------ENPEDVVARKAAEGYRAFK----LKVGF-------------DDARD 185 (392)
T ss_dssp C-CEEEEEE--E---EE------CS---------SSHHHHHHHHHHHTCCCEE----EECSS-------------CHHHH
T ss_pred C-CceeEEe--e---cC------CH---------HHHHHHHHHHHHcCCCEEE----EecCC-------------CHHHH
Confidence 6 6777743 2 21 11 1223444444444565543 44331 22344
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCc
Q 043137 227 KEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQ 306 (445)
Q Consensus 227 ~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~ 306 (445)
.++++++|+++ | +++.|++|+ |++||.++++++ .+.++++++.|||||+++
T Consensus 186 ~~~v~avR~a~---g--~~~~l~vDa-----------------------N~~~~~~~A~~~-~~~L~~~~i~~iEeP~~~ 236 (392)
T 3ddm_A 186 VRNALHVRELL---G--AATPLMADA-----------------------NQGWDLPRARQM-AQRLGPAQLDWLEEPLRA 236 (392)
T ss_dssp HHHHHHHHHHH---C--SSSCEEEEC-----------------------TTCCCHHHHHHH-HHHHGGGCCSEEECCSCT
T ss_pred HHHHHHHHHhc---C--CCceEEEeC-----------------------CCCCCHHHHHHH-HHHHHHhCCCEEECCCCc
Confidence 56666665555 5 589999999 367899999987 567899999999999999
Q ss_pred CC-HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCC
Q 043137 307 DD-WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGE 385 (445)
Q Consensus 307 ~D-~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~e 385 (445)
+| ++++++|+++++ +||++||+. +++++++++++.+++|++|||++++||||++++++++|+++|+++ ++|+ .+
T Consensus 237 ~d~~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~-~~h~-~~ 311 (392)
T 3ddm_A 237 DRPAAEWAELAQAAP--MPLAGGENI-AGVAAFETALAARSLRVMQPDLAKWGGFSGCLPVARAVVAAGLRY-CPHY-LG 311 (392)
T ss_dssp TSCHHHHHHHHHHCS--SCEEECTTC-CSHHHHHHHHHHTCEEEECCCTTTTTHHHHHHHHHHHHHHTTCEE-CCEE-CS
T ss_pred cchHHHHHHHHHhcC--CCEEeCCCC-CCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHHHHHHHHHcCCEE-EecC-Cc
Confidence 99 999999999998 999999985 679999999999999999999999999999999999999999998 5674 57
Q ss_pred Chhh--HHHHHHhhhc
Q 043137 386 TEDT--FIADLSVGLA 399 (445)
Q Consensus 386 t~~~--~~~~la~a~~ 399 (445)
+.++ +.+||+++++
T Consensus 312 ~~i~~aa~~hl~aa~p 327 (392)
T 3ddm_A 312 AGIGLQASAHLLAAVP 327 (392)
T ss_dssp CHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHhCC
Confidence 7665 4556665554
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-46 Score=374.52 Aligned_cols=293 Identities=14% Similarity=0.129 Sum_probs=225.4
Q ss_pred eEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+.. +.+ +++++|+|+|| |++|||+++.. ..+...
T Consensus 6 mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~td-G~~G~Ge~~~~-----------------------~~~~~~ 61 (372)
T 3cyj_A 6 PRVERLEVSAYTVPTDYPESDGTLQWDSTTMILVEAHGG-GRKGLGYTYGD-----------------------VSVGRF 61 (372)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEET-TEEEEEEEESC-----------------------THHHHH
T ss_pred CEEeEEEEEEEeccCCCcccCcccccccccEEEEEEEeC-CcEEEEeccCc-----------------------HHHHHH
Confidence 8999999887732 222 34689999999 99999976531 123445
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
+++.++|.|+|+||.+++.+|+.|.+.++++. .+++..+|++|||+||||+.||.+|+|||+||| |. +++
T Consensus 62 i~~~l~~~l~g~d~~~~~~i~~~l~~~~~~~~------~~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llG---g~-~~~ 131 (372)
T 3cyj_A 62 VESKLAGVAEGSDALSPPAVWARMQAAIRNAG------RPGVGAMAVSAVDIALWDLKARLLGLPLADALP---RF-HAE 131 (372)
T ss_dssp HHHHTHHHHTTSBTTCHHHHHHHHHHHTTTTC------SSBHHHHHHHHHHHHHHHHHHHHTTCBHHHHSC---CC-CSS
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHHhcC------CchHHHHHHHHHHHHHHHHhhhHcCCcHHHHhC---CC-CCC
Confidence 77789999999999999999999984433321 244557899999999999999999999999999 86 456
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGL 230 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l 230 (445)
+|+ |+++ |.+. .+. ++..+++.+...++|+++| .|+|. +.+.+.+++
T Consensus 132 vp~--~~~~--g~~~---~~~---------~~~~~~a~~~~~~G~~~~K----iKvG~-------------~~~~d~~~v 178 (372)
T 3cyj_A 132 VPV--YGSG--GFTS---YPL---------RRLQEQLGGWAAAGIPRVK----MKVGR-------------EPEKDPERV 178 (372)
T ss_dssp EEE--EEEC--CCTT---SCH---------HHHHHHHHHHHHTTCCEEE----EECCS-------------SGGGHHHHH
T ss_pred ceE--EEEc--CCCC---CCH---------HHHHHHHHHHHHcCCCEEE----EcCCC-------------CHHHHHHHH
Confidence 666 4432 3211 111 2234555555555665554 34331 234567777
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccC-CeeeEECCCCcCCH
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDY-PIVSIEDPFDQDDW 309 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~-~i~~iEdP~~~~D~ 309 (445)
+++|+++ | +++.|++|+| +.||.+++++++. .+++| ++.|||||++++|+
T Consensus 179 ~avr~a~---g--~~~~l~vDaN-----------------------~~~~~~~a~~~~~-~l~~~~~i~~iEqP~~~~d~ 229 (372)
T 3cyj_A 179 RAAREAI---G--ESVELMVDAN-----------------------GAYTRKQALYWAG-AFAREAGISYLEEPVSSEDR 229 (372)
T ss_dssp HHHHHHH---C--TTSEEEEECT-----------------------TCSCHHHHHHHHH-HHHHHHCCCEEECSSCTTCH
T ss_pred HHHHHHh---C--CCCeEEEECC-----------------------CCCCHHHHHHHHH-HHHhhcCCcEEECCCCcccH
Confidence 7777766 5 5899999993 6788999999855 58999 99999999999999
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
++|++|+++++.++||++||+. .+..+++++ .+++|++|||++++||||++++++++|+++|++++++++ .+
T Consensus 230 ~~~~~l~~~~~~~ipIa~dE~~-~~~~~~~~~--~~a~d~i~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~~-----~~ 301 (372)
T 3cyj_A 230 EGLRLLRDRGPGGVAIAAGEYE-WTLPQLHDL--AGCVDILQADVTRCGGITGLLRVDGICRGHQIPFSAHCA-----PA 301 (372)
T ss_dssp HHHHHHHHHSCTTCEEEECTTC-CSHHHHHHH--HTTCSEEEECTTTTTHHHHHTTHHHHHHHHTCCEEECSC-----HH
T ss_pred HHHHHHHHhCCCCCCEECCCCc-cCHHHHHHH--hCCCCEEecCchhhCCHHHHHHHHHHHHHcCCeecccch-----HH
Confidence 9999999998734699999986 568999998 899999999999999999999999999999999987764 34
Q ss_pred HHHHHHhhhc
Q 043137 390 FIADLSVGLA 399 (445)
Q Consensus 390 ~~~~la~a~~ 399 (445)
+.+|++.++.
T Consensus 302 a~lhlaaa~~ 311 (372)
T 3cyj_A 302 VSAHACCAVE 311 (372)
T ss_dssp HHHHHGGGCT
T ss_pred HHHHHHHhCC
Confidence 5677776654
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-46 Score=377.56 Aligned_cols=299 Identities=18% Similarity=0.195 Sum_probs=225.0
Q ss_pred eEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+.. +.+ +..++|+|+||+|++|||++.... . +...++..
T Consensus 28 mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~------------------~-~~~~~~~~ 88 (390)
T 3ugv_A 28 LTFRKLTARPVLLKLQRPVTARIATIPDWPLILIDIETEEGVPGRAYLEPYV------------------P-KAMKYLVP 88 (390)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCCEEEEECCSC------------------G-GGHHHHHH
T ss_pred CEEEEEEEEEEEecCCCCccCcccccccceEEEEEEEECCCCEEEEEeecCC------------------C-chHHHHHH
Confidence 8999999987742 333 356899999999999999754311 1 12344555
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
+.+.++|.|+|+||.++ ++|+.|.+.+.. .|++++..+|++|||+||||+.||.+|+|||+||| |.. ++
T Consensus 89 ~~~~l~p~liG~d~~~~-~~~~~l~~~~~~------~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLG---g~~-~~ 157 (390)
T 3ugv_A 89 ALHDMSDMLAGQPLAPA-EIYDKTRKSLHF------VGYAGLSMIAASGVDMAVWDALARAANMPLCTLLG---GTP-GS 157 (390)
T ss_dssp HHHHHHHHHTTSBCCHH-HHHHHHHHHTGG------GCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHTT---CCC-CE
T ss_pred HHHHHHHHHCCCCcchH-HHHHHHHHHHHh------hCCcchHHHHHHHHHHHHHHHHHHHcCCCHHHHhC---CCC-Cc
Confidence 67789999999999999 999999843321 12234446899999999999999999999999999 864 56
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHH---HHHHHHHHHHhhcCCCCcccCCCCCCCCCccChH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVE---VYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENK 227 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~---~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~ 227 (445)
+|+ |.++ |++.. ..++..++++.+...+ +|+++| .|+|. ++.+.+.
T Consensus 158 v~~--y~s~-g~~~~------------~~~e~~~~~a~~~~~~~~~G~~~iK----lKvG~------------~~~~~d~ 206 (390)
T 3ugv_A 158 VKA--YNSN-GLWLK------------SPAEVAAEAVELKAEGQGTGFKGLK----LRMGR------------DDPAVDI 206 (390)
T ss_dssp EEE--EECS-CCCSS------------CHHHHHHHHHHHHHTTCTTCCSEEE----EECCC------------SSHHHHH
T ss_pred eEE--EEec-ccccC------------CCHHHHHHHHHHHHHhhhCCCcEEE----EecCC------------CCHHHHH
Confidence 766 5443 22210 0112234444444444 555443 44431 1233445
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcC
Q 043137 228 EGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQD 307 (445)
Q Consensus 228 ~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~ 307 (445)
++++++|+++ | +++.|++|+ |++||.++++++ .+.++++++.|||||++++
T Consensus 207 ~~v~avR~a~---G--~~~~l~vDa-----------------------N~~~~~~~A~~~-~~~l~~~~i~~iEqP~~~~ 257 (390)
T 3ugv_A 207 ETAEAVWDAV---G--RDTALMVDF-----------------------NQGLDMAEAMHR-TRQIDDLGLEWIEEPVVYD 257 (390)
T ss_dssp HHHHHHHHHH---C--TTSEEEEEC-----------------------TTCCCHHHHHHH-HHHHTTSCCSEEECCSCTT
T ss_pred HHHHHHHHHh---C--CCCEEEEEC-----------------------CCCCCHHHHHHH-HHHHHhhCCCEEECCCCcc
Confidence 6666666555 5 589999999 367899999987 5668999999999999999
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCCh
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETE 387 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~ 387 (445)
|++++++|+++++ +||++||+. .++++++++++.+++|++|||++++||||++++++++|+++|+++++++ +
T Consensus 258 d~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~h~-~---- 329 (390)
T 3ugv_A 258 NFDGYAQLRHDLK--TPLMIGENF-YGPREMHQALQAGACDLVMPDFMRIGGVSGWMRAAGVAGAWGIPMSTHL-Y---- 329 (390)
T ss_dssp CHHHHHHHHHHCS--SCEEECTTC-CSHHHHHHHHHTTCCSEECCBHHHHTHHHHHHHHHHHHHHHTCCBCCBS-C----
T ss_pred cHHHHHHHHHhcC--CCEEeCCCc-CCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEeecC-H----
Confidence 9999999999998 999999985 6799999999999999999999999999999999999999999986544 3
Q ss_pred hhHHHHHHhhhc
Q 043137 388 DTFIADLSVGLA 399 (445)
Q Consensus 388 ~~~~~~la~a~~ 399 (445)
..+.+|++.++.
T Consensus 330 ~~a~lhl~aa~p 341 (390)
T 3ugv_A 330 PEVGAHVMRVTE 341 (390)
T ss_dssp HHHHHHHHTTCT
T ss_pred HHHHHHHHHhCC
Confidence 235678777654
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-45 Score=370.35 Aligned_cols=299 Identities=19% Similarity=0.224 Sum_probs=224.1
Q ss_pred eEEEEEEEEEEe--------cCCCC-----ceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHH
Q 043137 3 ITITAVKARQIF--------DSRGN-----PTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVS 69 (445)
Q Consensus 3 mkI~~v~~~~v~--------~~~g~-----~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~ 69 (445)
|||++|+++.+. ++.+. ++++|+|+||+|++|||+++.. | .+..++.+
T Consensus 2 ~kI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~~V~v~td~G~~G~Ge~~~~---g----------------~~~~~~~~ 62 (371)
T 2ovl_A 2 SLIERVRTDLYRIPLPTRLTDSTHGAMMDFELITVRIEDSDGATGLGYTYTV---N----------------HGGAAVAT 62 (371)
T ss_dssp -CEEEEEEEEEEEEEEEEEBCTTTCCEEEEEEEEEEEEETTSCEEEEEEEEE---S----------------SSHHHHHH
T ss_pred CceEEEEEEEEeccCCCCCccccccccCcceEEEEEEEECCCCEEEEeecCC---C----------------CchHHHHH
Confidence 699999998773 23332 3589999999999999976431 1 11345566
Q ss_pred HHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcc
Q 043137 70 NVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNL 149 (445)
Q Consensus 70 ~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~ 149 (445)
.+++.++|.|+|+||.+++.+|+.|.+.+.+. +++++..+|++|||+||||+.||.+|+|||+||| |. +.
T Consensus 63 ~i~~~l~~~l~G~d~~~~~~~~~~l~~~~~~~------~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~-~~ 132 (371)
T 2ovl_A 63 MVDKDLRGCLLGADAEQIEKIWQSMWWRLHYA------GRGGHATSAISAVDIALWDLKGIRARTPLWKLFG---GY-DP 132 (371)
T ss_dssp HHHHTTHHHHTTSCTTCHHHHHHHHHHHTCTT------CSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHTT---CC-CS
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHhhhc------CCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-CC
Confidence 67788999999999999999999998433321 2344567899999999999999999999999999 86 45
Q ss_pred eeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHH
Q 043137 150 VLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEG 229 (445)
Q Consensus 150 ~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~ 229 (445)
++|+ |++ +|.+. .+.+ ...+++.+...++|+.+| .|.|. .+.+.+.+.
T Consensus 133 ~v~~--y~~--~~~~~---~~~e---------~~~~~a~~~~~~Gf~~iK----ik~g~------------~~~~~~~e~ 180 (371)
T 2ovl_A 133 VVPV--YAG--GIDLE---LPVA---------DLKTQADRFLAGGFRAIK----MKVGR------------PDLKEDVDR 180 (371)
T ss_dssp EEEE--EEE--CCBTT---SCHH---------HHHHHHHHHHHTTCSCEE----EECCC------------SSHHHHHHH
T ss_pred CeeE--EEe--CCCcC---CCHH---------HHHHHHHHHHHcCCCEEE----ECCCC------------CCHHHHHHH
Confidence 5665 543 23210 1111 223444444434454433 33331 122334556
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCH
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDW 309 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~ 309 (445)
++++|+++ | +++.|++|+| ++||.+++++++ +.++++++.|||||++++|+
T Consensus 181 v~avr~a~---G--~d~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~i~~iEqP~~~~d~ 231 (371)
T 2ovl_A 181 VSALREHL---G--DSFPLMVDAN-----------------------MKWTVDGAIRAA-RALAPFDLHWIEEPTIPDDL 231 (371)
T ss_dssp HHHHHHHH---C--TTSCEEEECT-----------------------TCSCHHHHHHHH-HHHGGGCCSEEECCSCTTCH
T ss_pred HHHHHHHh---C--CCCeEEEECC-----------------------CCCCHHHHHHHH-HHHHhcCCCEEECCCCcccH
Confidence 66565555 5 5899999993 578899999984 56899999999999999999
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+++++|+++++ +||++||+. .++++++++++.+++|+++||++++||+|++++++++|+++|+++++++ +. .
T Consensus 232 ~~~~~l~~~~~--iPI~~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~gi~~~~h~-~~----~ 303 (371)
T 2ovl_A 232 VGNARIVRESG--HTIAGGENL-HTLYDFHNAVRAGSLTLPEPDVSNIGGYTTFRKVAALAEANNMLLTSHG-VH----D 303 (371)
T ss_dssp HHHHHHHHHHC--SCEEECTTC-CSHHHHHHHHHHTCCSEECCCTTTTTSHHHHHHHHHHHHHTTCCEEECS-CH----H
T ss_pred HHHHHHHhhCC--CCEEeCCCC-CCHHHHHHHHHcCCCCEEeeCccccCCHHHHHHHHHHHHHcCCeEcccc-HH----H
Confidence 99999999998 999999985 6699999999999999999999999999999999999999999987755 32 2
Q ss_pred HHHHHHhhhc
Q 043137 390 FIADLSVGLA 399 (445)
Q Consensus 390 ~~~~la~a~~ 399 (445)
+.+||+.++.
T Consensus 304 a~~hlaaa~~ 313 (371)
T 2ovl_A 304 LTVHALASVP 313 (371)
T ss_dssp HHHHHHTSCT
T ss_pred HHHHHHhhCC
Confidence 5677776654
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-46 Score=379.55 Aligned_cols=301 Identities=19% Similarity=0.250 Sum_probs=226.1
Q ss_pred ceEEEEEEEEEEec--------CC----------CCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCcc
Q 043137 2 AITITAVKARQIFD--------SR----------GNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKG 63 (445)
Q Consensus 2 ~mkI~~v~~~~v~~--------~~----------g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~ 63 (445)
.|||++|+++.+.. +. .+++++|+|+||+|++|||++++.. +.+
T Consensus 25 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~~~~----------------~~~-- 86 (398)
T 2pp0_A 25 GDRIEWVKLSLAFLPLATPVSDAKVLTGRQKPLTEVAIIIAEIRSRDGFEGVGFSYSKR----------------AGG-- 86 (398)
T ss_dssp SCCEEEEEEEEEEEEEEEEECCHHHHTTSSCCEEEEEEEEEEEEETTSCEEEEEEEESS----------------TTH--
T ss_pred CCeEEEEEEEEEeccCCCcccccccccccccccCCCcEEEEEEEECCCCEEEEEecCcc----------------chH--
Confidence 48999999987742 11 1357999999999999999875421 111
Q ss_pred HHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccc
Q 043137 64 VSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAEL 143 (445)
Q Consensus 64 ~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~ 143 (445)
.. +..+.+.++|.|+|+||.+++.+|+.|. ..... +|.+++..+|++|||+||||+.||.+|+|||+|||
T Consensus 87 -~~-~~~~~~~l~p~l~G~d~~~~~~i~~~l~-~~~~~-----~~~~~~~~~A~~aid~AlwDl~ak~~g~Pl~~lLG-- 156 (398)
T 2pp0_A 87 -QG-IYAHAKEIADNLLGEDPNDIDKIYTKLL-WAGAS-----VGRSGMAVQAISPIDIALWDMKAKRAGLPLAKLLG-- 156 (398)
T ss_dssp -HH-HHHHHHHHGGGGTTSCTTCHHHHHHHHH-HHTGG-----GCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHHC--
T ss_pred -HH-HHHHHHHHHHHHcCCCchhHHHHHHHHH-Hhhcc-----cCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhC--
Confidence 22 2233346999999999999999999998 43211 22345567899999999999999999999999999
Q ss_pred cCCCcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCc
Q 043137 144 SGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNI 223 (445)
Q Consensus 144 ~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~ 223 (445)
|. +.++|+ |+++ |+.+. .+.+ +..+++.+...++|+.+| .|.|. ++.
T Consensus 157 -g~-~~~vp~--y~~~-g~~~~---~~~e---------~~~~~a~~~~~~Gf~~vK----ik~g~------------~~~ 203 (398)
T 2pp0_A 157 -AH-RDSVQC--YNTS-GGFLH---TPLD---------QVLKNVVISRENGIGGIK----LKVGQ------------PNC 203 (398)
T ss_dssp -CS-CSEEEE--EECT-TSCTT---SCHH---------HHHHHHHHHHHTTCSCEE----EECCC------------SCH
T ss_pred -CC-CCCeeE--EEec-CCcCC---CCHH---------HHHHHHHHHHHhCCCeEE----EecCC------------CCH
Confidence 86 555554 6553 23210 1122 223445444444554443 23331 123
Q ss_pred cChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECC
Q 043137 224 QENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDP 303 (445)
Q Consensus 224 ~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP 303 (445)
+.+.+.++.+|+++ | +++.|++|+| ++||.+++++++ +.++++++.|||||
T Consensus 204 ~~d~e~v~avR~av---G--~d~~l~vDan-----------------------~~~~~~~ai~~~-~~l~~~~i~~iEqP 254 (398)
T 2pp0_A 204 AEDIRRLTAVREAL---G--DEFPLMVDAN-----------------------QQWDRETAIRMG-RKMEQFNLIWIEEP 254 (398)
T ss_dssp HHHHHHHHHHHHHH---C--SSSCEEEECT-----------------------TCSCHHHHHHHH-HHHGGGTCSCEECC
T ss_pred HHHHHHHHHHHHHc---C--CCCeEEEECC-----------------------CCCCHHHHHHHH-HHHHHcCCceeeCC
Confidence 33456666666655 5 5899999993 578899999985 56899999999999
Q ss_pred CCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCC
Q 043137 304 FDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRS 383 (445)
Q Consensus 304 ~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~ 383 (445)
++++|++++++|+++++ +||++||+. .++++++++++.+++|+++||++++||||++++++++|+++|++++ +|++
T Consensus 255 ~~~~d~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~i~~~A~~~gi~~~-~h~~ 330 (398)
T 2pp0_A 255 LDAYDIEGHAQLAAALD--TPIATGEML-TSFREHEQLILGNASDFVQPDAPRVGGISPFLKIMDLAAKHGRKLA-PHFA 330 (398)
T ss_dssp SCTTCHHHHHHHHHHCS--SCEEECTTC-CSHHHHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCEEC-CCSC
T ss_pred CChhhHHHHHHHHhhCC--CCEEecCCc-CCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEe-ecCc
Confidence 99999999999999998 999999985 5799999999999999999999999999999999999999999975 5655
Q ss_pred CCChhhHHHHHHhhhcC
Q 043137 384 GETEDTFIADLSVGLAT 400 (445)
Q Consensus 384 ~et~~~~~~~la~a~~~ 400 (445)
++ ..+||++++..
T Consensus 331 ~~----~~~~laaa~~~ 343 (398)
T 2pp0_A 331 ME----VHLHLSAAYPL 343 (398)
T ss_dssp HH----HHHHHHHTCSS
T ss_pred cH----HHHHHHhcCCC
Confidence 44 36899887653
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-46 Score=371.46 Aligned_cols=294 Identities=18% Similarity=0.174 Sum_probs=228.5
Q ss_pred eEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+.. +.+ +++++|+|+||+|++|||+++.. +.|++++..++...
T Consensus 2 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~---------------~~~~~e~~~~~~~~ 66 (345)
T 2zad_A 2 SRIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPS---------------FRVNGERVEALLAI 66 (345)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCC---------------HHHHCCCHHHHHHT
T ss_pred CEEEEEEEEEEEeeccCCEEecCeeEeeceEEEEEEEECCCCEEEEEecCC---------------CCcCCCCHHHHHHH
Confidence 6999999987732 222 35699999999999999976531 12446667787777
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
+++ ++|.|+|+||.+++.+|+.|. .+ ....+|++|||+||||+.||.+|+|||+||| | .+++
T Consensus 67 i~~-l~~~l~g~d~~~~~~~~~~l~-~~------------~~~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g-~~~~ 128 (345)
T 2zad_A 67 ENA-VREMITGIDVRNYARIFEITD-RL------------FGFPSLKAAVQFATLDALSQELGTQVCYLLG---G-KRDE 128 (345)
T ss_dssp HHH-HHHHHTTCBGGGHHHHHHHHT-TC------------TTSHHHHHHHHHHHHHHHHHHHTSCHHHHTT---C-CCSE
T ss_pred HHH-HHHHhCCCChhhHHHHHHHHH-Hh------------ccchHHHHHHHHHHHHHHHHHcCCcHHHHhC---C-CCCc
Confidence 887 999999999999999998883 32 1236899999999999999999999999999 8 5678
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGL 230 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l 230 (445)
+|+|. +++++ +. +...+++.+...++|+.+| .|.|. + ..+.+
T Consensus 129 v~~~~--~~~~~-------~~---------~~~~~~a~~~~~~Gf~~iK----ik~g~-------------~---~~~d~ 170 (345)
T 2zad_A 129 IETDK--TVGID-------TV---------ENRVKEAKKIFEEGFRVIK----IKVGE-------------N---LKEDI 170 (345)
T ss_dssp EEBCE--EECSC-------CH---------HHHHHHHHHHHHTTCSEEE----EECCS-------------C---HHHHH
T ss_pred eeeeE--EecCC-------CH---------HHHHHHHHHHHHcCcCEEE----EeecC-------------C---HHHHH
Confidence 88754 33322 11 1223444444444554443 33321 1 23445
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCee--eEECCCCcCC
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIV--SIEDPFDQDD 308 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~--~iEdP~~~~D 308 (445)
+.+ +++|++| +++.|++|+| ++||.+++++++ +.++++++. |||||++++|
T Consensus 171 ~~v-~avr~~g--~~~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~i~~~~iE~P~~~~~ 223 (345)
T 2zad_A 171 EAV-EEIAKVT--RGAKYIVDAN-----------------------MGYTQKEAVEFA-RAVYQKGIDIAVYEQPVRRED 223 (345)
T ss_dssp HHH-HHHHHHS--TTCEEEEECT-----------------------TCSCHHHHHHHH-HHHHHTTCCCSEEECCSCTTC
T ss_pred HHH-HHHHhhC--CCCeEEEECC-----------------------CCCCHHHHHHHH-HHHHhcCCCeeeeeCCCCccc
Confidence 555 4566556 6899999993 578889999985 568999999 9999999999
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~ 388 (445)
++++++|+++++ +||++||+. .++++++++++.+++|++|+|++| ||+|++++++++|+++|++++++|+ .||.+
T Consensus 224 ~~~~~~l~~~~~--ipia~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~-GGit~~~~i~~~A~~~g~~~~~~~~-~es~i 298 (345)
T 2zad_A 224 IEGLKFVRFHSP--FPVAADESA-RTKFDVMRLVKEEAVDYVNIKLMK-SGISDALAIVEIAESSGLKLMIGCM-GESSL 298 (345)
T ss_dssp HHHHHHHHHHSS--SCEEESTTC-CSHHHHHHHHHHTCCSEEEECHHH-HHHHHHHHHHHHHHTTTCEEEECCS-SCCHH
T ss_pred HHHHHHHHHhCC--CCEEEeCCc-CCHHHHHHHHHhCCCCEEEEeccc-ccHHHHHHHHHHHHHcCCeEEEecC-cccHH
Confidence 999999999998 999999985 679999999999999999999999 9999999999999999999988774 78877
Q ss_pred hH--HHHHHhhhc
Q 043137 389 TF--IADLSVGLA 399 (445)
Q Consensus 389 ~~--~~~la~a~~ 399 (445)
+. .+||+.+++
T Consensus 299 ~~aa~~hlaa~~~ 311 (345)
T 2zad_A 299 GINQSVHFALGTG 311 (345)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCC
Confidence 64 556666554
|
| >3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-46 Score=380.25 Aligned_cols=274 Identities=18% Similarity=0.180 Sum_probs=208.5
Q ss_pred eEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhcc
Q 043137 21 TVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDG 100 (445)
Q Consensus 21 ~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~ 100 (445)
+++|+|+||+|++|||++.. ...++..+.+.++|.|+|+||.+++++|+.|++...
T Consensus 66 ~vlV~V~tddGi~G~Ge~~~-----------------------~~~~~~~i~~~lap~LiG~dp~~ie~i~~~m~~~~~- 121 (455)
T 3fxg_A 66 SFLVEIEATDGTVGFATGFG-----------------------GPPACWLVHQHFERFLIGADPRNTNLLFEQMYRASM- 121 (455)
T ss_dssp EEEEEEEETTSCEEEEEEEC-----------------------HHHHHHHHHHTTHHHHTTCCTTCHHHHHHHHHHHTT-
T ss_pred EEEEEEEECCCCEEEEeCcC-----------------------CHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHhhh-
Confidence 48999999999999986532 122345677889999999999999999999984321
Q ss_pred CCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeeccCC
Q 043137 101 TVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180 (445)
Q Consensus 101 ~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~ 180 (445)
++|+.+...+|+|||||||||+.||.+|+|||+||| |+.|+++|+|. + |+ .
T Consensus 122 -----~~g~~G~~~~A~sAID~ALwDl~gK~~g~Pv~~LLG---G~~rd~vp~y~--~--g~-------~---------- 172 (455)
T 3fxg_A 122 -----FYGRKGLPIAVISVIDLALWDLLGKVRNEPVYRLIG---GATKERLDFYC--T--GP-------E---------- 172 (455)
T ss_dssp -----TTCSSSHHHHHHHHHHHHHHHHHHHHHTCBGGGGTT---CCSCSEEEEEE--E--SS-------C----------
T ss_pred -----hccCCcchHHHHHHHHHHHHHHHHHHcCCCHHHHhC---CccCCeeEEee--c--CC-------C----------
Confidence 122344445799999999999999999999999999 98788888743 2 11 0
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccC
Q 043137 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGS 260 (445)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~ 260 (445)
.+.+.+ ++|+++| .|+|... . .|. .+++.+.++++++|+++ | +++.|++|+
T Consensus 173 ---~~~~~~---~Gf~~~K----lKv~~~~-~---~G~--~~~~~di~rv~avRea~---G--~d~~L~vDa-------- 223 (455)
T 3fxg_A 173 ---PTAAKA---MGFWGGK----VPLPFCP-D---DGH--EGLRKNVEFLRKHREAV---G--PDFPIMVDC-------- 223 (455)
T ss_dssp ---HHHHHH---HTCSCEE----EECCCCG-G---GHH--HHHHHHHHHHHHHHHHH---C--SSSCEEEEC--------
T ss_pred ---HHHHHH---cCCCEEE----EcCCCCc-c---ccc--ccHHHHHHHHHHHHHHh---C--CCCeEEEeC--------
Confidence 012222 3465543 3432100 0 010 01223455555555554 6 589999999
Q ss_pred CceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHH
Q 043137 261 DKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEK 340 (445)
Q Consensus 261 ~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~ 340 (445)
|+.||.++++++ .+.+++|++.|||||++++|++++++|+++++ .+||++||+. .+++++++
T Consensus 224 ---------------N~~wt~~~Ai~~-~~~Le~~~l~~iEEPl~~dd~~~la~L~~~~~-~iPIA~gEs~-~s~~d~~~ 285 (455)
T 3fxg_A 224 ---------------YMSLNVSYTIEL-VKACLDLNINWWEECLSPDDTDGFALIKRAHP-TVKFTTGEHE-YSRYGFRK 285 (455)
T ss_dssp ---------------TTCCCHHHHHHH-HHHTGGGCCSEEECCSCGGGGGGHHHHHHHCT-TSEEEECTTC-CHHHHHHH
T ss_pred ---------------CCCCCHHHHHHH-HHhcccCCcceecCCCCcchHHHHHHHHHhCC-CCeEECCCcc-CCHHHHHH
Confidence 367899999987 56689999999999999999999999999973 2899999985 55999999
Q ss_pred HHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhc
Q 043137 341 AIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLA 399 (445)
Q Consensus 341 ~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~ 399 (445)
+++.+++|++|+|++++||||++++++++|+++|++++ +|.++ .+.+||++++.
T Consensus 286 li~~~avDiiq~d~~~~GGItea~kIa~lA~a~Gv~v~-~H~~~----~aslHlaaa~p 339 (455)
T 3fxg_A 286 LVEGRNLDIIQPDVMWLGGLTELLKVAALAAAYDVPVV-PHASG----PYSYHFQISQP 339 (455)
T ss_dssp HHTTCCCSEECCCTTTSSCHHHHHHHHHHHHTTTCCBC-CCSCT----HHHHHHHTTCT
T ss_pred HHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEE-ecchH----HHHHHHHHhCC
Confidence 99999999999999999999999999999999999975 45332 35678887764
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=371.44 Aligned_cols=298 Identities=16% Similarity=0.227 Sum_probs=224.9
Q ss_pred CceEEEEEEEEEEe--------cCCCC------ceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHH
Q 043137 1 MAITITAVKARQIF--------DSRGN------PTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSK 66 (445)
Q Consensus 1 ~~mkI~~v~~~~v~--------~~~g~------~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~ 66 (445)
|+|||++|+++.+. .+.+. ++++|+|+||+|++|||++... ++.|++++..+
T Consensus 1 m~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~V~v~td~G~~G~GE~~~~--------------~~~~~~~~~~~ 66 (378)
T 2qdd_A 1 MSLRITRLTVFHLDLPLAKPYWLSGGRLKFDRLDSTYLRIDTDEGVTGWGEGCPW--------------GHSYLPAHGPG 66 (378)
T ss_dssp -CCCEEEEEEEEEEEEEEEEEECCC--CEEEEEEEEEEEEEETTSCEEEEEECCS--------------TTTSSSCCHHH
T ss_pred CCCEEEEEEEEEEeccccCceecccCcccccccceEEEEEEECCCCEEEEEEecC--------------CCCcCCCCHHH
Confidence 78999999998773 23332 4689999999999999965421 02366777888
Q ss_pred HHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCC
Q 043137 67 AVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGN 146 (445)
Q Consensus 67 a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~ 146 (445)
+...++ .++|.|+|+||.+++.+|+.|. ... . + ..+|++|||+||||+.||.+|+|||+||| |.
T Consensus 67 ~~~~l~-~l~~~l~g~d~~~~~~~~~~l~-~~~---~------g--~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~ 130 (378)
T 2qdd_A 67 LRAGIA-TLAPHLLGLDPRSLDHVNRVMD-LQL---P------G--HSYVKSPIDMACWDILGQVAGLPLWQLLG---GE 130 (378)
T ss_dssp HHHHHH-HHHHHHTTCCTTCHHHHHHHHH-HHS---C------S--CHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CS
T ss_pred HHHHHH-HHHHHHCCCCccCHHHHHHHHH-Hhh---c------c--chHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC
Confidence 888888 8999999999999999999996 321 1 2 36899999999999999999999999999 87
Q ss_pred CcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCh
Q 043137 147 KNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQEN 226 (445)
Q Consensus 147 ~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~ 226 (445)
.++++|++ .+++.+ +. +...+++.+...++|+.+| .|.|. ++.+.+
T Consensus 131 ~~~~v~~~--~~~~~~-------~~---------e~~~~~a~~~~~~Gf~~iK----ik~g~------------~~~~~~ 176 (378)
T 2qdd_A 131 AATPVPIN--SSISTG-------TP---------DQMLGLIAEAAAQGYRTHS----AKIGG------------SDPAQD 176 (378)
T ss_dssp SCCCEEBE--EEECSC-------CH---------HHHHHHHHHHHHHTCCEEE----EECCS------------SCHHHH
T ss_pred CCCCCceE--EEecCC-------CH---------HHHHHHHHHHHHHhhhhee----ecCCC------------CChHHH
Confidence 66777764 433211 11 1223444444444554443 33331 122223
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCc
Q 043137 227 KEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQ 306 (445)
Q Consensus 227 ~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~ 306 (445)
.+.++.+|++ +| +++.|++|+| ++||.+++++++ +.++ +++ |||||++
T Consensus 177 ~e~v~avr~a---~g--~~~~l~vDan-----------------------~~~~~~~a~~~~-~~l~-~~i-~iEqP~~- 224 (378)
T 2qdd_A 177 IARIEAISAG---LP--DGHRVTFDVN-----------------------RAWTPAIAVEVL-NSVR-ARD-WIEQPCQ- 224 (378)
T ss_dssp HHHHHHHHHS---CC--TTCEEEEECT-----------------------TCCCHHHHHHHH-TSCC-CCC-EEECCSS-
T ss_pred HHHHHHHHHH---hC--CCCEEEEeCC-----------------------CCCCHHHHHHHH-HHhC-CCc-EEEcCCC-
Confidence 4444444333 45 5899999993 578889999884 5678 999 9999998
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCC
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGET 386 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et 386 (445)
|++++++|+++++ +||++||+. .++++++++++.+++|++++|++++||+|++++++++|+++|+++++++ +.|+
T Consensus 225 -d~~~~~~l~~~~~--iPI~~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~g~~~~~~~-~~es 299 (378)
T 2qdd_A 225 -TLDQCAHVARRVA--NPIMLDECL-HEFSDHLAAWSRGACEGVKIKPNRVGGLTRARQIRDFGVSVGWQMHIED-VGGT 299 (378)
T ss_dssp -SHHHHHHHHTTCC--SCEEECTTC-CSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECC-SSCC
T ss_pred -CHHHHHHHHHhCC--CCEEECCCc-CCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEEecC-CCCc
Confidence 9999999999988 999999985 5699999999999999999999999999999999999999999987765 5788
Q ss_pred hhhHH--HHHHhhhc
Q 043137 387 EDTFI--ADLSVGLA 399 (445)
Q Consensus 387 ~~~~~--~~la~a~~ 399 (445)
.++.. +||+.+++
T Consensus 300 ~i~~aa~~hlaaa~~ 314 (378)
T 2qdd_A 300 ALADTAALHLAASTP 314 (378)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHcCC
Confidence 77654 55555443
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-45 Score=369.41 Aligned_cols=296 Identities=19% Similarity=0.266 Sum_probs=222.9
Q ss_pred Cc-eEEEEEEEEEEecC---------CC-----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHH
Q 043137 1 MA-ITITAVKARQIFDS---------RG-----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVS 65 (445)
Q Consensus 1 ~~-mkI~~v~~~~v~~~---------~g-----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~ 65 (445)
|+ |||++|+++.+..+ .+ +++++|+|+||+|++|||++... ++.|.+++..
T Consensus 1 m~~MkI~~i~~~~~~~pl~~~p~~~s~~~~~~~~~~~~V~v~td~G~~G~GE~~~~--------------~~~~~~~~~~ 66 (371)
T 2ps2_A 1 MSDLKIARIDVFQVDLPYSGGVYYLSAGREYRSFDATIVRITTDTGIEGWGESTPF--------------GSNYIASHPR 66 (371)
T ss_dssp --CCCEEEEEEEEEEECBTTSCCCCC-------EEEEEEEEEETTSCEEEEEECCS--------------TTTSSSCCHH
T ss_pred CCCCEEEEEEEEEEecccCCCCeeecccceeccCceEEEEEEECCCCEEEEEEecC--------------CcccCCCCHH
Confidence 55 89999999888522 11 24589999999999999965421 0126677777
Q ss_pred HHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccC
Q 043137 66 KAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSG 145 (445)
Q Consensus 66 ~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G 145 (445)
++...+++ ++|.|+|+||.+++.+|+.|.+.+. + ..+|++|||+||||+.||.+|+|||+||| |
T Consensus 67 ~~~~~i~~-l~~~l~g~d~~~~~~~~~~l~~~~~----------~--~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g 130 (371)
T 2ps2_A 67 GVRAGIAT-MAPSLIGLDPRRVDRINDAMDDALL----------G--HEDAKTAIDVACWDIFGKSVGLPVCELLG---G 130 (371)
T ss_dssp HHHHHHHH-HHHHHTTSCTTCHHHHHHHHHHHCS----------S--CHHHHHHHHHHHHHHHHHHHTCBHHHHTT---C
T ss_pred HHHHHHHH-HHHHHCCCCcccHHHHHHHHHHHhc----------c--cHHHHHHHHHHHHHHHHHHcCCcHHHHhC---C
Confidence 77778876 9999999999999999999983221 1 25799999999999999999999999999 8
Q ss_pred CCcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccC
Q 043137 146 NKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQE 225 (445)
Q Consensus 146 ~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~ 225 (445)
..++++|+ |.+++++ +. +...+++.+...++|+.+| .|.| . +.
T Consensus 131 ~~~~~vp~--~~~~~~~-------~~---------~~~~~~a~~~~~~Gf~~iK----ik~g-------~------~~-- 173 (371)
T 2ps2_A 131 RTNTRLPL--ISSIYVG-------EP---------EDMRARVAKYRAKGYKGQS----VKIS-------G------EP-- 173 (371)
T ss_dssp CCSSCEEB--EEEECSC-------CH---------HHHHHHHHHHHTTTCCEEE----EECC-------S------CH--
T ss_pred CCCCceEE--EEEeCCC-------CH---------HHHHHHHHHHHHhChheEE----eecC-------C------CH--
Confidence 76666666 5444322 11 1223344443333444333 2322 1 12
Q ss_pred hHHHHHHHHHHHHH-hCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhh-ccCCeeeEECC
Q 043137 226 NKEGLELLNTAIAK-AGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFI-SDYPIVSIEDP 303 (445)
Q Consensus 226 ~~~~l~~l~~av~~-~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l-~~~~i~~iEdP 303 (445)
...++.+ +++|+ +| +++.|++|+| ++||.+++++++ +.+ +++++ |||||
T Consensus 174 -~~~~e~v-~avr~a~g--~~~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~~i-~iE~P 224 (371)
T 2ps2_A 174 -VTDAKRI-TAALANQQ--PDEFFIVDAN-----------------------GKLSVETALRLL-RLLPHGLDF-ALEAP 224 (371)
T ss_dssp -HHHHHHH-HHHTTTCC--TTCEEEEECT-----------------------TBCCHHHHHHHH-HHSCTTCCC-EEECC
T ss_pred -HHHHHHH-HHHHHhcC--CCCEEEEECC-----------------------CCcCHHHHHHHH-HHHHhhcCC-cCcCC
Confidence 3334444 34443 45 5899999993 578889999985 457 89999 99999
Q ss_pred CCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCC
Q 043137 304 FDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRS 383 (445)
Q Consensus 304 ~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~ 383 (445)
++ |++++++|+++++ +||++||+. +++++++++++.+++|++++|++++||+|++++++++|+++|++++++|+
T Consensus 225 ~~--~~~~~~~l~~~~~--iPI~~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~- 298 (371)
T 2ps2_A 225 CA--TWRECISLRRKTD--IPIIYDELA-TNEMSIVKILADDAAEGIDLKISKAGGLTRGRRQRDICLAAGYSVSVQET- 298 (371)
T ss_dssp BS--SHHHHHHHHTTCC--SCEEESTTC-CSHHHHHHHHHHTCCSEEEEEHHHHTSHHHHHHHHHHHHHHTCEEEEECS-
T ss_pred cC--CHHHHHHHHhhCC--CCEEeCCCc-CCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHcCCeEEecCC-
Confidence 98 9999999999988 999999985 77999999999999999999999999999999999999999999998885
Q ss_pred CCChhhHHHHHHhhh
Q 043137 384 GETEDTFIADLSVGL 398 (445)
Q Consensus 384 ~et~~~~~~~la~a~ 398 (445)
.||.++..+.++++.
T Consensus 299 ~es~i~~aa~~hlaa 313 (371)
T 2ps2_A 299 CGSDIAFAAIVHLAQ 313 (371)
T ss_dssp SCCHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHH
Confidence 488776555444443
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-45 Score=372.07 Aligned_cols=297 Identities=16% Similarity=0.216 Sum_probs=226.6
Q ss_pred ceEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHH
Q 043137 2 AITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVS 69 (445)
Q Consensus 2 ~mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~ 69 (445)
.|||++|+++.+.. +.+ +++++|+|+||+|++|||+++ +. ...+..
T Consensus 3 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~-g~---------------------~~~~~~ 60 (382)
T 2gdq_A 3 LVKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECV-DW---------------------LPALHV 60 (382)
T ss_dssp CCBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEEC-SC---------------------HHHHHH
T ss_pred CCEEEEEEEEEEecccCcccccccceeccCcEEEEEEEECCCCEEEEeec-Cc---------------------hHHHHH
Confidence 39999999987742 222 357899999999999999775 21 123455
Q ss_pred HHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcc
Q 043137 70 NVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNL 149 (445)
Q Consensus 70 ~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~ 149 (445)
.|++.++|.|+|+||.+++.+|+.|. .. ..+|++|||+||||+.||.+|+|||+||| |..++
T Consensus 61 ~i~~~l~~~l~G~d~~~~~~~~~~l~-~~--------------~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~~~~ 122 (382)
T 2gdq_A 61 GFTKRIIPFLLGKQAGSRLSLVRTIQ-KW--------------HQRAASAVSMALTEIAAKAADCSVCELWG---GRYRE 122 (382)
T ss_dssp HHHHTHHHHHTTSBTTCHHHHHHHHH-HH--------------CHHHHHHHHHHHHHHHHHHTTSBHHHHTT---CCSCS
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHH-HH--------------HhHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCC
Confidence 67777999999999999999999997 31 14799999999999999999999999999 87667
Q ss_pred eeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHH
Q 043137 150 VLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEG 229 (445)
Q Consensus 150 ~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~ 229 (445)
++|++. .+ |+.+. ..+++ +..++++.+...++|+.+| .|.| . .+.+.+.+.
T Consensus 123 ~vp~~~--~~-g~~~~-~~~~~---------e~~~~~a~~~~~~Gf~~vK----ik~g-------~-----~~~~~d~e~ 173 (382)
T 2gdq_A 123 EIPVYA--SF-QSYSD-SPQWI---------SRSVSNVEAQLKKGFEQIK----VKIG-------G-----TSFKEDVRH 173 (382)
T ss_dssp EEEEEE--EC-CCBCS-STTHH---------HHHHHHHHHHHTTTCCEEE----EECS-------S-----SCHHHHHHH
T ss_pred ceeEEE--Ee-cccCC-CcccH---------HHHHHHHHHHHHcCCCEEE----EcCC-------C-----CCHHHHHHH
Confidence 777643 32 21110 00000 1223444444334444433 2322 1 123334566
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccC-CeeeEECCCCcCC
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDY-PIVSIEDPFDQDD 308 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~-~i~~iEdP~~~~D 308 (445)
++++|+++ | +++.|++|+| ++||.+++++++ +.++++ ++.|||||++++|
T Consensus 174 v~avR~a~---G--~d~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~~i~~iEqP~~~~d 224 (382)
T 2gdq_A 174 INALQHTA---G--SSITMILDAN-----------------------QSYDAAAAFKWE-RYFSEWTNIGWLEEPLPFDQ 224 (382)
T ss_dssp HHHHHHHH---C--TTSEEEEECT-----------------------TCCCHHHHHTTH-HHHTTCSCEEEEECCSCSSC
T ss_pred HHHHHHhh---C--CCCEEEEECC-----------------------CCCCHHHHHHHH-HHHhhccCCeEEECCCCccc
Confidence 66666655 5 5899999993 578889999884 568999 9999999999999
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~ 388 (445)
++++++|+++++ +||++||+. .++++++++++.+++|++++|++++||||++++++++|+++|+++++ | +.|+.+
T Consensus 225 ~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~-~-~~es~i 299 (382)
T 2gdq_A 225 PQDYAMLRSRLS--VPVAGGENM-KGPAQYVPLLSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFGVRASA-H-AYDGSL 299 (382)
T ss_dssp HHHHHHHHTTCS--SCEEECTTC-CSHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHHTCEECC-C-CSSCSH
T ss_pred HHHHHHHHhhCC--CCEEecCCc-CCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEee-c-CCCcHH
Confidence 999999999988 999999985 66999999999999999999999999999999999999999999865 5 678988
Q ss_pred hHHHHHHhhhcCC
Q 043137 389 TFIADLSVGLATG 401 (445)
Q Consensus 389 ~~~~~la~a~~~~ 401 (445)
+.+++++++...+
T Consensus 300 ~~~a~l~laa~~~ 312 (382)
T 2gdq_A 300 SRLYALFAQACLP 312 (382)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhCc
Confidence 8777666665444
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-45 Score=371.58 Aligned_cols=295 Identities=17% Similarity=0.152 Sum_probs=226.4
Q ss_pred CceEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHH
Q 043137 1 MAITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAV 68 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~ 68 (445)
|.|||++|+++.+.. +.+ +++++|+|+|| |++|||+++..+ .+.|+++++.++.
T Consensus 6 ~~mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td-G~~G~GE~~~~~-------------~~~~~~e~~~~~~ 71 (375)
T 1r0m_A 6 RMFKIEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHGE-GVQGVAEGTMEA-------------RPMYREETIAGAL 71 (375)
T ss_dssp CCEECCEEEEEEEEEEBC----------CEEEEEEEEEEET-TEEEEEECCCBS-------------SSSSSSCBHHHHH
T ss_pred cccEEEEEEEEEEeeecCCCeEecceEEeeccEEEEEEEEC-CeEEEEEEecCC-------------CCcccCCCHHHHH
Confidence 569999999987742 122 35789999995 999999765421 1237788888888
Q ss_pred HHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCc
Q 043137 69 SNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKN 148 (445)
Q Consensus 69 ~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~ 148 (445)
..+++.++|.|+|+|+.+++.+++.|. .+. + +.+|++|||+||||+.||..|+|||+||| |. +
T Consensus 72 ~~i~~~l~~~l~g~d~~~~~~l~~~~~-~~~----------g--~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~-~ 134 (375)
T 1r0m_A 72 DLLRGTFLPAILGQTFANPEAVSDALG-SYR----------G--NRMARAMVEMAAWDLWARTLGVPLGTLLG---GH-K 134 (375)
T ss_dssp HHHHHTHHHHHTTCEESSHHHHHHTTT-TSC----------S--CHHHHHHHHHHHHHHHHHHHTCBHHHHHT---CC-C
T ss_pred HHHHHHHHHHHcCCCcCCHHHHHHHHH-Hcc----------C--chHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-C
Confidence 889888999999999999999886664 321 1 25799999999999999999999999999 86 3
Q ss_pred ceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHH
Q 043137 149 LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKE 228 (445)
Q Consensus 149 ~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~ 228 (445)
..+|++ |++ |.+. +. ++..+++.+...++|+.+| .|.| + +.+.+
T Consensus 135 ~~~~~~-~~~---g~~~----~~---------~~~~~~a~~~~~~G~~~iK----ik~~-------------~--~~d~~ 178 (375)
T 1r0m_A 135 EQVEVG-VSL---GIQA----DE---------QATVDLVRRHVEQGYRRIK----LKIK-------------P--GWDVQ 178 (375)
T ss_dssp SEEEBC-EEE---CCCS----SH---------HHHHHHHHHHHHTTCSCEE----EECB-------------T--TBSHH
T ss_pred Cceeee-EEe---cCCC----CH---------HHHHHHHHHHHHhcccEEE----EecC-------------h--HHHHH
Confidence 457765 332 2110 11 1223444444444454443 2211 2 23466
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCC
Q 043137 229 GLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDD 308 (445)
Q Consensus 229 ~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D 308 (445)
.++++|+++ +++.|++|+| +.||.++ +++ .+.++++++.|||||++++|
T Consensus 179 ~v~avr~a~------~~~~l~vDan-----------------------~~~~~~~-~~~-~~~l~~~~i~~iEqP~~~~d 227 (375)
T 1r0m_A 179 PVRATREAF------PDIRLTVDAN-----------------------SAYTLAD-AGR-LRQLDEYDLTYIEQPLAWDD 227 (375)
T ss_dssp HHHHHHHHC------TTSCEEEECT-----------------------TCCCGGG-HHH-HHTTGGGCCSCEECCSCTTC
T ss_pred HHHHHHHHc------CCCeEEEeCC-----------------------CCCCHHH-HHH-HHHHHhCCCcEEECCCCccc
Confidence 676666553 5789999993 5678888 887 45689999999999999999
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~ 388 (445)
++++++|+++++ +||++||+. +++++++++++.+++|++|||++++||||++++++++|+++|+++|++|+ .|+.+
T Consensus 228 ~~~~~~l~~~~~--ipIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~-~es~i 303 (375)
T 1r0m_A 228 LVDHAELARRIR--TPLCLDESV-ASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCGGM-LESGI 303 (375)
T ss_dssp SHHHHHHHHHCS--SCEEESTTC-CSHHHHHHHHHHTSCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECCC-CCCHH
T ss_pred HHHHHHHHHhCC--CCEEecCcc-CCHHHHHHHHHhCCCCEEEECcchhcCHHHHHHHHHHHHHcCCcEEecCc-cccHH
Confidence 999999999998 999999985 77999999999999999999999999999999999999999999999995 58877
Q ss_pred hHHHHHHhh
Q 043137 389 TFIADLSVG 397 (445)
Q Consensus 389 ~~~~~la~a 397 (445)
+..+.++++
T Consensus 304 ~~aa~~hla 312 (375)
T 1r0m_A 304 GRAHNIHLS 312 (375)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 765544444
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=375.98 Aligned_cols=304 Identities=17% Similarity=0.203 Sum_probs=230.4
Q ss_pred CceEEEEEEEEEEe--------cCCCC------ceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHH
Q 043137 1 MAITITAVKARQIF--------DSRGN------PTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSK 66 (445)
Q Consensus 1 ~~mkI~~v~~~~v~--------~~~g~------~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~ 66 (445)
|.|||++|+++.+. ++.+. ++++|+|+||+|++|+|+++. | ++..+
T Consensus 37 ~~MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~v~V~v~td~G~~G~GE~~~----g----------------~~~~~ 96 (428)
T 3bjs_A 37 HDMKITKINAIPLSYRLPEGKTVTMGVGSTIKRDAIIIRVETSEGITGYGEAHP----G----------------RSPGA 96 (428)
T ss_dssp --CBEEEEEEEEEEEECC---CCBCSSCBCSEEEEEEEEEEETTSCEEEEEECC----T----------------TCHHH
T ss_pred CCCEEeEEEEEEEecccCCcccccccccccccccEEEEEEEECCCCEEEEEecC----C----------------CCHHH
Confidence 46999999999883 33443 579999999999999997653 1 12456
Q ss_pred HHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCC
Q 043137 67 AVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGN 146 (445)
Q Consensus 67 a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~ 146 (445)
+...|++.++|.|+|+||.+++.+|+.|.+... |+.++.++..+|++||||||||+.||.+|+|||+||| |.
T Consensus 97 ~~~~i~~~l~p~liG~d~~~~~~i~~~l~~~~~-----~~~~~~g~~~~A~~aid~AlwDl~gk~~g~Pl~~lLG---g~ 168 (428)
T 3bjs_A 97 ITSLIHNTIAPMLIGMKATDCVGAWQRVHRMQL-----SSHGLGAGAALAISGIDMALWDIRGKAANMPLYELLG---GS 168 (428)
T ss_dssp HHHHHHHTTTTTTTTSBTTCHHHHHHHHHHHTT-----TTTSCTHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CC
T ss_pred HHHHHHHHHHHHhCCCCccCHHHHHHHHHHhhh-----hccCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhC---CC
Confidence 667788789999999999999999999973211 0111233456899999999999999999999999999 86
Q ss_pred CcceeeeeeEEeecCcccCCCCcccceeeeccCC-hhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccC
Q 043137 147 KNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG-ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQE 225 (445)
Q Consensus 147 ~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~-~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~ 225 (445)
+.++|+ |++ |..+. ..+ +..++++.+...++|+.+| .|.|. +.+.
T Consensus 169 -~~~vp~--~~s--g~~~~------------~~~~e~~~~~a~~~~~~Gf~~vK----ik~g~-------------~~~~ 214 (428)
T 3bjs_A 169 -KRRIPA--YAG--GIALG------------YQPKESLAEEAQEYIARGYKALK----LRIGD-------------AARV 214 (428)
T ss_dssp -CCCEEE--EEE--SSCSC------------SCCHHHHHHHHHHHHHHTCSEEE----EECCS-------------CHHH
T ss_pred -CCceee--eee--ccccC------------CChHHHHHHHHHHHHHCCCCEEE----ECCCC-------------CHHH
Confidence 555665 543 22111 111 2234555555555565543 34331 2233
Q ss_pred hHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCC
Q 043137 226 NKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFD 305 (445)
Q Consensus 226 ~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~ 305 (445)
+.+.++++|+++ | +++.|++|+| ++||.+++++++ +.++++++.|||||++
T Consensus 215 d~e~v~avR~av---G--~d~~l~vDan-----------------------~~~~~~eai~~~-~~L~~~~i~~iEqP~~ 265 (428)
T 3bjs_A 215 DIERVRHVRKVL---G--DEVDILTDAN-----------------------TAYTMADARRVL-PVLAEIQAGWLEEPFA 265 (428)
T ss_dssp HHHHHHHHHHHH---C--TTSEEEEECT-----------------------TCCCHHHHHHHH-HHHHHTTCSCEECCSC
T ss_pred HHHHHHHHHHhc---C--CCCEEEEECC-----------------------CCCCHHHHHHHH-HHHHhcCCCEEECCCC
Confidence 455565555554 5 5899999993 578889999985 5689999999999999
Q ss_pred cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCC
Q 043137 306 QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGE 385 (445)
Q Consensus 306 ~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~e 385 (445)
++|++++++|+++++ ++||++||+. .++++++++++.+++|++++|++++||||++++++++|+++|++++++ +.|
T Consensus 266 ~~d~~~~~~l~~~~~-~iPIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGitea~~ia~~A~~~gi~~~~~--~~e 341 (428)
T 3bjs_A 266 CNDFASYREVAKITP-LVPIAAGENH-YTRFEFGQMLDAGAVQVWQPDLSKCGGITEGIRIAAMASAYRIPINAH--SSA 341 (428)
T ss_dssp TTCHHHHHHHTTTCS-SSCEEECTTC-CSHHHHHHHHTTCCEEEECCBTTTSSCHHHHHHHHHHHHHTTCCBCCB--CCS
T ss_pred ccCHHHHHHHHHhCC-CCcEEcCCCc-CCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEec--CCC
Confidence 999999999998864 4999999985 569999999999999999999999999999999999999999998654 678
Q ss_pred ChhhHH--HHHHhhhc
Q 043137 386 TEDTFI--ADLSVGLA 399 (445)
Q Consensus 386 t~~~~~--~~la~a~~ 399 (445)
|.++.+ +||++++.
T Consensus 342 s~i~~~a~~hlaaa~~ 357 (428)
T 3bjs_A 342 TGLNHAATIHFLAATE 357 (428)
T ss_dssp SHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHhCC
Confidence 887755 67777655
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 4hn8_A 3nxl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-45 Score=378.99 Aligned_cols=313 Identities=15% Similarity=0.146 Sum_probs=222.9
Q ss_pred CceEEEEEEEEEEecCC--C-------C---ceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHH
Q 043137 1 MAITITAVKARQIFDSR--G-------N---PTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAV 68 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~~--g-------~---~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~ 68 (445)
|+||||+|+++.|.-+. . . ..++|+|+||+|++|+|+++. + ..+.
T Consensus 6 ~~~~It~i~~~~v~~~d~~~~~~~g~h~p~~~~~~V~i~td~Gi~G~GE~~~--------------------~---~~v~ 62 (470)
T 3p0w_A 6 HTPRVTEMQVIPVAGRDSMLLNLCGAHAPFFTRNLVILKDNAGRTGVGEVPG--------------------G---EGIR 62 (470)
T ss_dssp CCCBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEEC--------------------C---HHHH
T ss_pred CCCeEEEEEEEEecCCCcccccccccCCCcceEEEEEEEECCCCEEEEeCCC--------------------h---HHHH
Confidence 46899999999985331 1 1 257999999999999998642 1 2233
Q ss_pred HHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccc--------------c-----------chhhHHHHHHH
Q 043137 69 SNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQK--------------L-----------GANAILAVSLA 123 (445)
Q Consensus 69 ~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~--------------~-----------~~~a~sAvdiA 123 (445)
..|++ ++|.|+|+||.+++.+|+.|++.+... ++++ . ..+|+||||+|
T Consensus 63 ~~i~~-l~p~LiG~d~~~ie~i~~~~~~~~~~~------~~~G~~~~~~~~~r~~~p~~~~g~~~~~~~~~~A~sAID~A 135 (470)
T 3p0w_A 63 QALER-VIPLVVGQSIGRTNGVLSSIRRALAGG------GNAAHQATVHQVTSASEAAVLRQPHEINLRMDNVITAVEAA 135 (470)
T ss_dssp HHHHH-TGGGTTTCBGGGHHHHHHHHHHHHC-------------------------------------CHHHHHHHHHHH
T ss_pred HHHHH-HHHHhCCCChhhHHHHHHHHHHHHhhc------CCCCcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 44654 899999999999999999999544211 1111 0 13799999999
Q ss_pred HHHHHHHhcCCchhhhhccccC-CCcceeeeeeEEeecCcccCCCCccccee-------e-----eccCChhcHHHHHHH
Q 043137 124 VCKAGAHVKKIPLYKHIAELSG-NKNLVLPVPAFNVINGGSHAGNKLAMQEF-------M-----ILPVGASCFKEAMKM 190 (445)
Q Consensus 124 lwD~~gk~~g~Pl~~lLG~~~G-~~~~~vp~~~~~~~~gg~~~~~~~~~~e~-------~-----~~p~~~~~~~~a~~~ 190 (445)
|||+.||.+|+|||+||| | +.++++|+|.+....|.. ....+..... . -.-.+++.++++.+.
T Consensus 136 LWDl~gK~~g~Pv~~LLG---gG~~r~~v~~y~~~~~~gd~-~~t~~~~~~~~~~~~~w~~~~~~~~~~~e~~~~~a~~~ 211 (470)
T 3p0w_A 136 LLDLLGQFLEVPVAELLG---AGQQRDSAPMLAYLFYVGDR-RKTDLPYLEGANGADDWLRLRHEAAMTPAAIARLAEAA 211 (470)
T ss_dssp HHHHHHHHHTSBGGGTST---TSCCCSEEEBCEEECCBCCG-GGSCSCCCCCCTTCCHHHHHTTSCBCSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHhC---CCCCCCeEEEeeeecccccc-ccccccccccccccccccccccccCCCHHHHHHHHHHH
Confidence 999999999999999999 5 567889987653221110 0000000000 0 000122334444444
Q ss_pred HH-HHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeeccc
Q 043137 191 GV-EVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFK 269 (445)
Q Consensus 191 ~~-~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~ 269 (445)
.. ++|+++| .|+|. .+.+.+.++++ ++|+++ +++.|++|+
T Consensus 212 ~~~~Gf~~~K----lKvG~------------~~~~~Di~rv~----avRea~--pd~~L~vDa----------------- 252 (470)
T 3p0w_A 212 TERYGFADFK----LKGGV------------MPGAEEMEAIA----AIKARF--PHARVTLDP----------------- 252 (470)
T ss_dssp HHHHCCSEEE----EECSS------------SCHHHHHHHHH----HHHHHC--TTSEEEEEC-----------------
T ss_pred HHhCCCCEEE----EeCCC------------CCHHHHHHHHH----HHHHhC--CCCeEEeeC-----------------
Confidence 43 3555543 44331 11122344444 455544 689999999
Q ss_pred CCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCC----HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcC
Q 043137 270 EENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDD----WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEK 345 (445)
Q Consensus 270 ~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D----~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~ 345 (445)
|+.||.++++++ .+.++++ +.|||||++++| ++++++|+++++ +||++||+ +++..+++++++.+
T Consensus 253 ------N~~w~~~~Ai~~-~~~Le~~-l~~iEeP~~~~d~~~~~~~~~~l~~~~~--iPIa~dE~-~~~~~~~~~~l~~~ 321 (470)
T 3p0w_A 253 ------NGAWSLNEAIAL-CKGQGHL-VAYAEDPCGPEAGYSGREVMAEFKRATG--IPTATNMI-ATDWRQMGHAVQLH 321 (470)
T ss_dssp ------TTBBCHHHHHHH-HTTCTTT-CSEEESCBCCBTTBCHHHHHHHHHHHHC--CCEEESSS-SCSHHHHHHHHHTT
T ss_pred ------CCCCCHHHHHHH-HHhcccc-ceeecCCCChhhccchHHHHHHHHhcCC--CCEEeCCc-cCCHHHHHHHHHcC
Confidence 467899999987 5678899 999999999999 799999999999 99999997 57799999999999
Q ss_pred CCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh--HHHHHHhhhc
Q 043137 346 TCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT--FIADLSVGLA 399 (445)
Q Consensus 346 a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~--~~~~la~a~~ 399 (445)
++|++|+|+ ++||||++++++++|+++|+++ .+|++.++.++ +++||++++.
T Consensus 322 a~div~~d~-~~GGit~a~kia~lA~a~gv~~-~~h~~~e~~I~~aA~~hlaaa~p 375 (470)
T 3p0w_A 322 AVDIPLADP-HFWTMQGSVRVAQLCDEWGLTW-GSHSNNHFDVSLAMFTHVAAAAP 375 (470)
T ss_dssp CCSEEBCCH-HHHCHHHHHHHHHHHHHHTCCC-BCCCCSCCHHHHHHHHHHHHTCC
T ss_pred CCCEEEecC-ccCCHHHHHHHHHHHHHcCCEE-EecCCcccHHHHHHHHHHHHhCC
Confidence 999999999 8999999999999999999996 56766777665 4567766654
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=378.51 Aligned_cols=312 Identities=13% Similarity=0.125 Sum_probs=221.6
Q ss_pred eEEEEEEEEEEecC-------CC--C---ceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFDS-------RG--N---PTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~~-------~g--~---~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
||||+|+++.+..+ .| . ..++|+|+||+ ++|+|+++. + ......
T Consensus 27 mkIt~i~~~~v~~p~~p~~~~~g~~~~~~~~~~V~v~td~-~~G~GE~~g--------------------~---~~~~~~ 82 (445)
T 3va8_A 27 SIIKEIVITPVAFHDMPLLNSVGVHEPFALRSIIEIITED-SYGLGESYG--------------------D---SAHLDR 82 (445)
T ss_dssp TBCCEEEEEEEEEECCCBEETTEECCSEEEEEEEEEECSS-CEEEEEEEC--------------------C---HHHHHH
T ss_pred CEEEEEEEEEEecCCcccccccCcccCceeEEEEEEEECC-CEEEEecCC--------------------c---HHHHHH
Confidence 89999999988533 11 1 23799999999 999997642 1 122334
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcc-cccccc------cchhhHHHHHHHHHHHHHHhcCCchhhhhccc
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEW-GWCKQK------LGANAILAVSLAVCKAGAHVKKIPLYKHIAEL 143 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~-~~~~~~------~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~ 143 (445)
| +.++|.|+|+||.+++++|+.|++.+.+.. .+ ..|..+ +...|++|||+||||+.||.+|+|||+|||
T Consensus 83 i-~~l~p~LiG~d~~~ie~i~~~l~~~~~~~~-~~~~~G~~G~~~~~~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLG-- 158 (445)
T 3va8_A 83 L-QKAADKIKGLSVYSTNVIYQRCVESLRNDT-NTGGDGMGGMVVTASVADKVFSPFEVACLDLQGKLAGISVSDLLG-- 158 (445)
T ss_dssp H-HHHHHHHTTSBTTCHHHHHHHHHHHTTTCC-C--CCSSTTSSCCSCHHHHHHHHHHHHHHHHHHHHHTCBHHHHTT--
T ss_pred H-HHHHHHHCCCChhHHHHHHHHHHHhhhccc-ccccccccCccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhC--
Confidence 5 469999999999999999999995432210 00 012222 445799999999999999999999999999
Q ss_pred cCCCcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHH-HHHHHHHHHHhhcCCCCcccCCCCCCCCC
Q 043137 144 SGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVE-VYHHLKAVIKKKYGQDATNVGDEGGFAPN 222 (445)
Q Consensus 144 ~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~-~~~~~k~~lk~k~G~~~~~~~~~g~~~~~ 222 (445)
|..++++|++.+.......+ ++. .......+..+++.++++.+...+ +|+++| .|.|. .+
T Consensus 159 -G~~r~~v~~~a~~~y~~~~~-~g~-~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~K----lKvG~------------~~ 219 (445)
T 3va8_A 159 -GRVRDSVQYSAYLFYKWGGH-PGD-EDDEYGPALDPEGVVKQAKKIIDEYGFKAIK----LKGGV------------FP 219 (445)
T ss_dssp -CCSSSEEEBCEEEECBCSSS-TTS-CCCTTCCBCSHHHHHHHHHHHHHHHCCSCEE----EECSS------------SC
T ss_pred -CCCCCeEEEeeeeccccccc-ccc-cccccccCCCHHHHHHHHHHHHHhcCCCEEE----EccCC------------CC
Confidence 98888999865542110000 000 000000001122334445444432 555543 34331 11
Q ss_pred ccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEEC
Q 043137 223 IQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIED 302 (445)
Q Consensus 223 ~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEd 302 (445)
.+.+.++++++|+++ +++.|++|+ |+.||.++++++ .+.++++ +.||||
T Consensus 220 ~~~Di~~v~avRea~------~~~~L~vDa-----------------------N~~w~~~~Ai~~-~~~L~~~-l~~iEe 268 (445)
T 3va8_A 220 PADEVAAIKALHKAF------PGVPLRLDP-----------------------NAAWTVETSKWV-AKELEGI-VEYLED 268 (445)
T ss_dssp HHHHHHHHHHHHHHS------TTCCEEEEC-----------------------TTCBCHHHHHHH-HHHTTTT-CSEEES
T ss_pred HHHHHHHHHHHHHhC------CCCcEeeeC-----------------------CCCCCHHHHHHH-HHHHhhh-cCeEee
Confidence 233445555554443 589999999 468899999987 5568999 999999
Q ss_pred CCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC
Q 043137 303 PFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 303 P~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~ 382 (445)
|++ |++++++|+++++ +||++||+. +++++++++++.+++|++|+|++++||||++++++++|+++|+++++ |.
T Consensus 269 P~~--d~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~a~div~~d~~~~GGitea~kia~lA~~~gv~v~~-h~ 342 (445)
T 3va8_A 269 PAG--EIEGMAAVAKEAS--MPLATNMAV-VAFDHLPPSILQDAVQVILSDHHFWGGLRKSQTLASICATWGLRLSM-HS 342 (445)
T ss_dssp CBS--HHHHHHHHHTTCS--SCEEESSSC-CSGGGHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEE-CC
T ss_pred cCc--CHHHHHHHHHcCC--CCEEeCCcc-CCHHHHHHHHHcCCCCEEEecchhcCCHHHHHHHHHHHHHcCCEEEE-eC
Confidence 985 8999999999998 999999984 67999999999999999999999999999999999999999999755 55
Q ss_pred CCCChhhHH--HHHHhhh
Q 043137 383 SGETEDTFI--ADLSVGL 398 (445)
Q Consensus 383 ~~et~~~~~--~~la~a~ 398 (445)
+.++.++.+ +||++++
T Consensus 343 ~~e~~I~~aa~~hlaaa~ 360 (445)
T 3va8_A 343 NSHLGISLAAMTHLASAT 360 (445)
T ss_dssp CSCCHHHHHHHHHHHHTC
T ss_pred CcccHHHHHHHHHHHHhC
Confidence 677777644 5666544
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-45 Score=370.52 Aligned_cols=301 Identities=14% Similarity=0.120 Sum_probs=226.3
Q ss_pred CceEEEEEEEEEEecCCCC--------------------c-----------eEEEEEEeCCCceEEEeccCCCccccccc
Q 043137 1 MAITITAVKARQIFDSRGN--------------------P-----------TVEVDVTTSDGHVARAAVPSGASTGIYEA 49 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~~g~--------------------~-----------~v~V~v~td~G~~G~g~~~~~~~~g~~e~ 49 (445)
|.|||++|+++.+..+... | +++|+|+||+|++|||++++..
T Consensus 1 m~mkI~~i~~~~~~~pl~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~------- 73 (388)
T 2nql_A 1 MNSPIATVEVFTLTQPRKVPYLGALREGEVVNPNGYIVRKGNRTVYPTFDRSVLVRMTTEAGTVGWGETYGIV------- 73 (388)
T ss_dssp CCCCEEEEEEEEEEECCCSCCGGGCCSCCCCBGGGEEECTTTCCEEESSEEEEEEEEEETTCCEEEEEEECSS-------
T ss_pred CCceEeEEEEEEEeccCcccccccccccccccccccccCCccccccCccceEEEEEEEECCCCEEEEEecCCC-------
Confidence 8899999999988543211 2 6899999999999999765421
Q ss_pred eeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHH
Q 043137 50 LELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGA 129 (445)
Q Consensus 50 ~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~g 129 (445)
++ ......|++.++|.|+|+||.+++.+|+.|. .+ ++.+ .+..++..+|++|||+||||+.|
T Consensus 74 -----------~~--~~~~~~i~~~l~~~l~G~d~~~~~~i~~~l~-~~-~~~~---~~~~~~~~~a~~aid~AlwDl~a 135 (388)
T 2nql_A 74 -----------AP--GAVAALINDLLAGFVIGRDASDPSAVYDDLY-DM-MRVR---GYTGGFYVDALAALDIALWDIAG 135 (388)
T ss_dssp -----------CH--HHHHHHHHHTHHHHHTTCCSSSHHHHHHHHH-HH-HGGG---TCSSHHHHHHHHHHHHHHHHHHH
T ss_pred -----------Cc--HHHHHHHHHHHHHHhcCCCcccHHHHHHHHH-hh-cccc---cCCchHHHHHHHHHHHHHHHHHH
Confidence 11 2445567778999999999999999999996 21 1111 11234457899999999999999
Q ss_pred HhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 043137 130 HVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQD 209 (445)
Q Consensus 130 k~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~ 209 (445)
|.+|+|||+||| |. ++++|++ +++ |... +.+ +..+++.+...++|+.+| .|.|
T Consensus 136 k~~g~Pl~~llG---g~-~~~vp~~--~~~--g~~~----~~e---------~~~~~a~~~~~~Gf~~vK----ik~g-- 188 (388)
T 2nql_A 136 QEAGKSIRDLLG---GG-VDSFPAY--VSG--LPER----TLK---------ARGELAKYWQDRGFNAFK----FATP-- 188 (388)
T ss_dssp HHHTSBHHHHTT---CC-CSEEEEE--EEC--CCCS----SHH---------HHHHHHHHHHHTTCCEEE----EEGG--
T ss_pred HHcCCcHHHHhC---CC-CCceEee--EEe--CCCC----CHH---------HHHHHHHHHHHhCCCEEE----EeCC--
Confidence 999999999999 87 6677774 333 2110 111 223444444334454443 2322
Q ss_pred CcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHH
Q 043137 210 ATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYK 289 (445)
Q Consensus 210 ~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~ 289 (445)
+ .+.+. .+.++.+|+++ | +++.|++|+| ++||.+++++++
T Consensus 189 --------~--~~~~~-~e~v~avr~a~---g--~d~~l~vDan-----------------------~~~~~~~a~~~~- 228 (388)
T 2nql_A 189 --------V--ADDGP-AAEIANLRQVL---G--PQAKIAADMH-----------------------WNQTPERALELI- 228 (388)
T ss_dssp --------G--CTTCH-HHHHHHHHHHH---C--TTSEEEEECC-----------------------SCSCHHHHHHHH-
T ss_pred --------C--CChHH-HHHHHHHHHHh---C--CCCEEEEECC-----------------------CCCCHHHHHHHH-
Confidence 1 12333 55666665555 5 5899999993 578889999985
Q ss_pred HhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHH
Q 043137 290 SFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRM 369 (445)
Q Consensus 290 ~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~ 369 (445)
+.++++++.|||||++++|++++++|+++++ +||++||+. .++++++++++.+++|+|++|+++ ||+|++++++++
T Consensus 229 ~~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~--iPI~~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~-GGit~~~~i~~~ 304 (388)
T 2nql_A 229 AEMQPFDPWFAEAPVWTEDIAGLEKVSKNTD--VPIAVGEEW-RTHWDMRARIERCRIAIVQPEMGH-KGITNFIRIGAL 304 (388)
T ss_dssp HHHGGGCCSCEECCSCTTCHHHHHHHHTSCC--SCEEECTTC-CSHHHHHHHHTTSCCSEECCCHHH-HCHHHHHHHHHH
T ss_pred HHHhhcCCCEEECCCChhhHHHHHHHHhhCC--CCEEEeCCc-CCHHHHHHHHHcCCCCEEEecCCC-CCHHHHHHHHHH
Confidence 5689999999999999999999999999988 999999985 579999999999999999999999 999999999999
Q ss_pred HHHcCCcEEecCCCCCChhhHHHHHHhhh
Q 043137 370 SKQAGWGVMASHRSGETEDTFIADLSVGL 398 (445)
Q Consensus 370 A~~~g~~~~~~~~~~et~~~~~~~la~a~ 398 (445)
|+++|+++++ |++.||.++..+.++++.
T Consensus 305 A~~~g~~~~~-h~~~es~i~~aa~~hlaa 332 (388)
T 2nql_A 305 AAEHGIDVIP-HATVGAGIFLAASLQASS 332 (388)
T ss_dssp HHHHTCEECC-CCCSSCSHHHHHHHHHHT
T ss_pred HHHcCCeEEe-ecCCCcHHHHHHHHHHHH
Confidence 9999999866 546788876555444443
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-45 Score=367.84 Aligned_cols=294 Identities=17% Similarity=0.184 Sum_probs=229.6
Q ss_pred eEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+.. +.+ +++++|+|+||+| +|||+++..+ .+.|+++++.++...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G-~G~GE~~~~~-------------~~~~~~e~~~~~~~~ 66 (368)
T 1sjd_A 1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMA-------------GPLYSSEYNDGAEHV 66 (368)
T ss_dssp CCCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSC-EEEEECCCBS-------------SSSSSSCBHHHHHHH
T ss_pred CEEEEEEEEEEeccccCCeEeeeeEEecccEEEEEEEeCCC-EEEEEecCCC-------------CCccccCcHHHHHHH
Confidence 8999999887642 222 3578999999999 9999765421 123778888888888
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
+++.++|.|+|+|+.+++.+|+.|. .+. + +.+|++|||+||||+.||.+|+|||+||| |. +..
T Consensus 67 i~~~l~~~l~g~d~~~~~~l~~~~~-~~~----------g--~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~-~~~ 129 (368)
T 1sjd_A 67 LRHYLIPALLAAEDITAAKVTPLLA-KFK----------G--HRMAKGALEMAVLDAELRAHERSFAAELG---SV-RDS 129 (368)
T ss_dssp HHHTHHHHHHHSSSCCHHHHHHHHT-TSC----------S--CHHHHHHHHHHHHHHHHHHTTCBHHHHHT---CC-CSE
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHH-Hhc----------C--CHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-CCC
Confidence 9888999999999999999988775 332 1 25799999999999999999999999999 86 456
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGL 230 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l 230 (445)
+|++ |++ |.+. +. +...+++.+...++|+.+| .|.| + +.+.+.+
T Consensus 130 ~~~~-~~~---g~~~----~~---------~~~~~~a~~~~~~Gf~~vK----ik~~-------------~--~~~~e~v 173 (368)
T 1sjd_A 130 VPCG-VSV---GIMD----TI---------PQLLDVVGGYLDEGYVRIK----LKIE-------------P--GWDVEPV 173 (368)
T ss_dssp EEBE-EEE---CCCS----CH---------HHHHHHHHHHHHHTCSEEE----EECB-------------T--TBSHHHH
T ss_pred ccce-EEe---eCCC----CH---------HHHHHHHHHHHHhCccEEE----EecC-------------c--hhHHHHH
Confidence 7765 332 2110 11 1223445444444554443 2211 2 2347788
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHH
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWE 310 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~ 310 (445)
+.+|+++ | +++.|++|+| ++||.++ +++ .+.++++++.|||||++++|++
T Consensus 174 ~avr~~~---g--~~~~l~vDan-----------------------~~~~~~~-~~~-~~~l~~~~i~~iE~P~~~~~~~ 223 (368)
T 1sjd_A 174 RAVRERF---G--DDVLLQVDAN-----------------------TAYTLGD-APQ-LARLDPFGLLLIEQPLEEEDVL 223 (368)
T ss_dssp HHHHHHH---C--TTSEEEEECT-----------------------TCCCGGG-HHH-HHTTGGGCCSEEECCSCTTCHH
T ss_pred HHHHHhc---C--CCceEEEecc-----------------------CCCCHHH-HHH-HHHHHhcCCCeEeCCCChhhHH
Confidence 8777776 5 5899999993 5678889 887 5568999999999999999999
Q ss_pred HHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH
Q 043137 311 HYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF 390 (445)
Q Consensus 311 ~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~ 390 (445)
++++|+++++ +||++||+. +++++++++++.+++|++++|++++||||++++++++|+++|+++|++|+ .|+.++.
T Consensus 224 ~~~~l~~~~~--ipIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~-~es~i~~ 299 (368)
T 1sjd_A 224 GHAELARRIQ--TPICLDESI-VSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGGM-IETGLGR 299 (368)
T ss_dssp HHHHHHTTCS--SCEEESTTC-CSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECCC-CCCHHHH
T ss_pred HHHHHHHhCC--CCEEECCCc-CCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEeCCc-cccHHHH
Confidence 9999999988 999999985 77999999999999999999999999999999999999999999999995 5887765
Q ss_pred HHHHHhh
Q 043137 391 IADLSVG 397 (445)
Q Consensus 391 ~~~la~a 397 (445)
.+.++++
T Consensus 300 aa~~hla 306 (368)
T 1sjd_A 300 AANVALA 306 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-45 Score=369.19 Aligned_cols=297 Identities=15% Similarity=0.159 Sum_probs=224.4
Q ss_pred CceEEEEEEEEEEecC---------CC-----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHH
Q 043137 1 MAITITAVKARQIFDS---------RG-----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSK 66 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~---------~g-----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~ 66 (445)
|+|||++|+++.+..+ .+ +++++|+|+||+|++|||+++.. | +.|++++..+
T Consensus 1 m~mkI~~i~~~~~~~pl~~~p~~~s~~~~~~~~~~~~V~v~td~G~~G~GE~~~~---~-----------~~~~~~~~~~ 66 (379)
T 2rdx_A 1 MSLRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPC---G-----------ENYMIAHSEG 66 (379)
T ss_dssp -CCCEEEEEEEEEEEEBTTSCCEETTTEECSEEEEEEEEEEETTSCEEEEEEBCS---S-----------TTSSSCCTTH
T ss_pred CCCEEEEEEEEEEeeecCCCCcEecCceeecccceEEEEEEECCCCEEEEEeecC---C-----------CCcCCCCHHH
Confidence 7899999999887432 12 24589999999999999976431 0 1255666666
Q ss_pred HHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCC
Q 043137 67 AVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGN 146 (445)
Q Consensus 67 a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~ 146 (445)
+...++ .++|.|+|+||.+++.+|+.|. ... .+ ..+|++|||+||||+.||.+|+|||+||| |.
T Consensus 67 ~~~~i~-~l~~~l~g~d~~~~~~~~~~l~-~~~---------~g--~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~ 130 (379)
T 2rdx_A 67 VDAFAR-LAAPQLLGQDPRQVARMERLMD-HLV---------QG--HGYAKAPFDAAFWDILGQATGQPVWMLLG---GK 130 (379)
T ss_dssp HHHHHH-HHHHHHTTSCTTCHHHHHHHHH-HHS---------SS--CHHHHHHHHHHHHHHHHHHHTCBHHHHTT---SC
T ss_pred HHHHHH-HHHHHHcCCChhhHHHHHHHHH-HHh---------cc--cHHHHHHHHHHHHHHhHHHhCCCHHHHcC---CC
Confidence 677787 7999999999999999999996 321 12 46899999999999999999999999999 97
Q ss_pred CcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCh
Q 043137 147 KNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQEN 226 (445)
Q Consensus 147 ~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~ 226 (445)
.++++|++ .++ |.. +. +...+++.+...++|+.+| .|.| . +.
T Consensus 131 ~~~~v~~~--~~~--~~~-----~~---------~~~~~~a~~~~~~Gf~~iK----ik~g-------~------~~--- 172 (379)
T 2rdx_A 131 LCDGAPMY--RVA--PQR-----SE---------AETRAELARHRAAGYRQFQ----IKVG-------A------DW--- 172 (379)
T ss_dssp CCSSEEBC--EEC--CCS-----CS---------HHHHHHHHHHHHTTCCEEE----EECC-------S------CH---
T ss_pred CCCceeEE--EEe--cCC-----CH---------HHHHHHHHHHHHcCCCEEE----Eecc-------C------CH---
Confidence 67777774 332 210 11 2223444444333444433 2322 1 12
Q ss_pred HHHHHHHHHHHHH-hCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCC
Q 043137 227 KEGLELLNTAIAK-AGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFD 305 (445)
Q Consensus 227 ~~~l~~l~~av~~-~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~ 305 (445)
...++.+ +++|+ +| +++.|++|+| ++||.+++++++ +.++++++ |||||++
T Consensus 173 ~~~~e~v-~avr~a~g--~d~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~i-~iE~P~~ 224 (379)
T 2rdx_A 173 QSDIDRI-RACLPLLE--PGEKAMADAN-----------------------QGWRVDNAIRLA-RATRDLDY-ILEQPCR 224 (379)
T ss_dssp HHHHHHH-HHHGGGSC--TTCEEEEECT-----------------------TCSCHHHHHHHH-HHTTTSCC-EEECCSS
T ss_pred HHHHHHH-HHHHHhcC--CCCEEEEECC-----------------------CCCCHHHHHHHH-HHHHhCCe-EEeCCcC
Confidence 2333444 34443 45 5899999993 578899999874 56899999 9999998
Q ss_pred cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCC
Q 043137 306 QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGE 385 (445)
Q Consensus 306 ~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~e 385 (445)
|++++++|+++++ +||++||+. +++++++++++.+++|++++|++++||+|++++++++|+++|+++++++ +.|
T Consensus 225 --~~~~~~~l~~~~~--iPI~~de~i-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~-~~e 298 (379)
T 2rdx_A 225 --SYEECQQVRRVAD--QPMKLDECV-TGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAED-SWG 298 (379)
T ss_dssp --SHHHHHHHHTTCC--SCEEECTTC-CSHHHHHHHHHHTCCSEEEEETTTTTSHHHHHHHHHHHHHTTCCEEEEC-SBC
T ss_pred --CHHHHHHHHhhCC--CCEEEeCCc-CCHHHHHHHHHcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCeEEEee-ccC
Confidence 9999999999988 999999985 7799999999999999999999999999999999999999999998775 578
Q ss_pred ChhhHHHHHHhhhc
Q 043137 386 TEDTFIADLSVGLA 399 (445)
Q Consensus 386 t~~~~~~~la~a~~ 399 (445)
+.++.+++++++..
T Consensus 299 s~i~~~a~~~laaa 312 (379)
T 2rdx_A 299 GEIASAAVAHFAAS 312 (379)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHc
Confidence 88876665555543
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-45 Score=374.96 Aligned_cols=315 Identities=12% Similarity=0.119 Sum_probs=222.9
Q ss_pred ceEEEEEEEEEEecC--C-----C--C---ceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHH
Q 043137 2 AITITAVKARQIFDS--R-----G--N---PTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVS 69 (445)
Q Consensus 2 ~mkI~~v~~~~v~~~--~-----g--~---~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~ 69 (445)
+||||+|+++.|.-+ . | . ..++|+|+||+|++|||+++.+ ..+.+
T Consensus 4 ~~~It~v~~~~v~~~d~~~~~~~g~~~~~~~~~iV~v~td~Gi~G~GE~~~~-----------------------~~v~~ 60 (450)
T 3mzn_A 4 FPKITKMNVVPVAGEDGFLLNLSGGHEPWFIRCVLVLEDESGNRGVGEIPSS-----------------------EGILN 60 (450)
T ss_dssp CCBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEECC-----------------------HHHHH
T ss_pred CCEEEEEEEEEecccCccccccccCCCCcceEEEEEEEECCCCEEEEeCCCc-----------------------HHHHH
Confidence 489999999998522 1 1 1 2368999999999999986421 22234
Q ss_pred HHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCccccccc------ccchhhHHHHHHHHHHHHHHhcCCchhhhhccc
Q 043137 70 NVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQ------KLGANAILAVSLAVCKAGAHVKKIPLYKHIAEL 143 (445)
Q Consensus 70 ~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~------~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~ 143 (445)
.|+ .++|.|+|+||.+++++|+.|++.+.+... ++ ++ .+..+|+||||+||||+.||.+|+|||+|||
T Consensus 61 ~i~-~l~p~LiG~dp~~ie~i~~~~~~~~~~~~~--g~-~G~~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLG-- 134 (450)
T 3mzn_A 61 GLE-KCRSLVEGARVNEVKQVLSRARGLLAQGGP--EE-RGRQTFDLRVAVHVITAIESALFDLFGQALGMPVADLLG-- 134 (450)
T ss_dssp HHH-HTHHHHTTCBGGGHHHHHHHHHHHHGGGCC--CC-CCSSSSCCCSHHHHHHHHHHHHHHHHHHHHTCBGGGGST--
T ss_pred HHH-HHHHHhCCCChhhHHHHHHHHHHHhhcccC--CC-cccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhC--
Confidence 454 489999999999999999999854421100 00 11 1346899999999999999999999999999
Q ss_pred cC--CCcceeeeeeEEeecCcccCCCCccccee-------e-----eccCChhcHHHHHHHHH-HHHHHHHHHHHhhcCC
Q 043137 144 SG--NKNLVLPVPAFNVINGGSHAGNKLAMQEF-------M-----ILPVGASCFKEAMKMGV-EVYHHLKAVIKKKYGQ 208 (445)
Q Consensus 144 ~G--~~~~~vp~~~~~~~~gg~~~~~~~~~~e~-------~-----~~p~~~~~~~~a~~~~~-~~~~~~k~~lk~k~G~ 208 (445)
| +.|+++|+|.+....|... ...+..... . -.-.+++.++++.+... ++|+++| .|+|.
T Consensus 135 -~~G~~r~~v~~y~~~~~~gd~~-~t~~~~~s~~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~K----lKvG~ 208 (450)
T 3mzn_A 135 -QYGRQRDEVEALGYLFLLGDPD-KTDLPYPRVADPVDAWDEVRYREAMTPEAVANLARAAYDRYGFKDFK----LKGGV 208 (450)
T ss_dssp -TTCCCCSEEEBCEEEECBCCGG-GSSSCCCCCSSCCSHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSEEE----EECSS
T ss_pred -CCCCcCceEEeeeeeccccccc-cccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEE----ECCCC
Confidence 6 4578899876543222100 000000000 0 00012223344444333 2555443 34331
Q ss_pred CCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHH
Q 043137 209 DATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLY 288 (445)
Q Consensus 209 ~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~ 288 (445)
.+. .+.++.+ +++|+++ +++.|++|+ |+.||.++++++
T Consensus 209 ------------~~~---~~Di~~v-~avRea~--pd~~L~vDa-----------------------N~~w~~~~A~~~- 246 (450)
T 3mzn_A 209 ------------LRG---EEEADCI-RALHEAF--PEARLALDP-----------------------NGAWKLDEAVRV- 246 (450)
T ss_dssp ------------SCH---HHHHHHH-HHHHHHC--TTSEEEEEC-----------------------TTCBCHHHHHHH-
T ss_pred ------------CCH---HHHHHHH-HHHHHhC--CCCeEEEEC-----------------------CCCCCHHHHHHH-
Confidence 111 2334444 3455544 689999999 467899999987
Q ss_pred HHhhccCCeeeEECCCCcCC----HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHH
Q 043137 289 KSFISDYPIVSIEDPFDQDD----WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESI 364 (445)
Q Consensus 289 ~~~l~~~~i~~iEdP~~~~D----~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~ 364 (445)
.+.++++ +.|||||++++| ++++++|+++++ +||++||+ +++..+++++++.+++|++|+|+ ++||||+++
T Consensus 247 ~~~L~~~-i~~iEeP~~~~d~~~~~~~~~~l~~~~~--iPIa~dE~-~~~~~~~~~~i~~~a~di~~~d~-~~GGit~a~ 321 (450)
T 3mzn_A 247 LEPIKHL-LSYAEDPCGQEGGFSGRETMAEFKKRTG--LPTATNMI-ATDYKQLQYAVQLNSVDIPLADC-HFWTMQGAV 321 (450)
T ss_dssp HGGGGGG-CSEEESSBCCBTTBCHHHHHHHHHHHHC--CCEEESSS-SSSHHHHHHHHHHTCCSEEBCCH-HHHCHHHHH
T ss_pred HHHhhhc-cceeeCCCCcccccchHHHHHHHHHhcC--CCEEeCCc-cCCHHHHHHHHHcCCCCEEEecC-ccCCHHHHH
Confidence 5678999 999999999999 799999999999 99999997 57799999999999999999999 799999999
Q ss_pred HHHHHHHHcCCcEEecCCCCCChhh--HHHHHHhhhc
Q 043137 365 EAVRMSKQAGWGVMASHRSGETEDT--FIADLSVGLA 399 (445)
Q Consensus 365 ~ia~~A~~~g~~~~~~~~~~et~~~--~~~~la~a~~ 399 (445)
+++++|+++|+++ .+|.+.++.++ +++||+.+++
T Consensus 322 kia~lA~a~gv~~-~~h~~~~~~I~~aA~~hlaaa~p 357 (450)
T 3mzn_A 322 AVGELCNEWGMTW-GSHSNNHFDISLAMMTHVAAACP 357 (450)
T ss_dssp HHHHHHHHTTCCC-BCCCCSCCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCEE-EecCCcccHHHHHHHHHHHHhCC
Confidence 9999999999996 56766777665 4556666653
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-45 Score=368.54 Aligned_cols=307 Identities=17% Similarity=0.217 Sum_probs=228.8
Q ss_pred eEEEEEEEEEEec-----------C-CC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHH
Q 043137 3 ITITAVKARQIFD-----------S-RG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSK 66 (445)
Q Consensus 3 mkI~~v~~~~v~~-----------~-~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~ 66 (445)
|||++|+++.+.. + .+ +++++|+|+||+|++|||+++. + +.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~-------~--------------~~-- 57 (382)
T 1rvk_A 1 MIITDVEVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQEGHSFTAP-------E--------------IV-- 57 (382)
T ss_dssp CBEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTSCEEEEEECG-------G--------------GG--
T ss_pred CeEeEEEEEEEecCCCCcccccccccccccccceEEEEEEEECCCCEEEEEecC-------c--------------hH--
Confidence 8999999987732 1 11 2468999999999999997651 1 01
Q ss_pred HHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCC
Q 043137 67 AVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGN 146 (445)
Q Consensus 67 a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~ 146 (445)
+...|++.++|.|+|+||.+++.+|+.|.+... + .| +++..+|++|||+||||+.||.+|+|||+||| |.
T Consensus 58 ~~~~i~~~l~~~l~g~d~~~~~~~~~~l~~~~~---~---~g-~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llG---g~ 127 (382)
T 1rvk_A 58 RPHVIEKFVKKVLIGEDHRDRERLWQDLAHWQR---G---SA-AQLTDRTLAVVDCALWDLAGRSLGQPVYKLIG---GY 127 (382)
T ss_dssp CHHHHHHTHHHHHTTSBTTCHHHHHHHHHHHHT---T---TT-TCSCHHHHHHHHHHHHHHHHHHHTCBHHHHHC---CS
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhh---c---cc-chHHHHHHHHHHHHHHHHhHhHhCCCHHHHhC---CC
Confidence 344577789999999999999999999963221 1 11 34457899999999999999999999999999 87
Q ss_pred CcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccCh
Q 043137 147 KNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQEN 226 (445)
Q Consensus 147 ~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~ 226 (445)
+.++|++.++.+ |+.|... . ..++...+++.+...++|+.+| .|.|... +++.++.+.+
T Consensus 128 -~~~vp~~~~~~~-g~~~~~~-~--------~~~e~~~~~a~~~~~~Gf~~iK----ik~g~~~------~~~~~~~~~~ 186 (382)
T 1rvk_A 128 -RDKVLAYGSIMC-GDELEGG-L--------ATPEDYGRFAETLVKRGYKGIK----LHTWMPP------VSWAPDVKMD 186 (382)
T ss_dssp -CSEEEEEEEECC-CCCCTTT-T--------SSHHHHHHHHHHHHHHTCSEEE----EECCCTT------STTCCCHHHH
T ss_pred -CCcceecEEecc-Ccccccc-C--------CCHHHHHHHHHHHHHCCCCEEE----EcCCcCc------cccccchHHH
Confidence 667777543211 3322110 0 1112234455555555665554 4444210 1122233444
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCc
Q 043137 227 KEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQ 306 (445)
Q Consensus 227 ~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~ 306 (445)
.+.++++|+++ | +++.|++|+| ++||.++++++ .+.++++++.|||||+++
T Consensus 187 ~e~v~avr~a~---g--~d~~l~vDan-----------------------~~~~~~~a~~~-~~~l~~~~i~~iE~P~~~ 237 (382)
T 1rvk_A 187 LKACAAVREAV---G--PDIRLMIDAF-----------------------HWYSRTDALAL-GRGLEKLGFDWIEEPMDE 237 (382)
T ss_dssp HHHHHHHHHHH---C--TTSEEEEECC-----------------------TTCCHHHHHHH-HHHHHTTTCSEEECCSCT
T ss_pred HHHHHHHHHHh---C--CCCeEEEECC-----------------------CCCCHHHHHHH-HHHHHhcCCCEEeCCCCh
Confidence 55555555554 5 5899999993 57888999998 467899999999999999
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccC-HHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCC
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTN-PKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGE 385 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~-~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~e 385 (445)
+|++++++|+++++ +||++||+. .+ +++++++++.+++|++++|++++||||++++++++|+++|++++++ +.|
T Consensus 238 ~~~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~--~~~ 312 (382)
T 1rvk_A 238 QSLSSYKWLSDNLD--IPVVGPESA-AGKHWHRAEWIKAGACDILRTGVNDVGGITPALKTMHLAEAFGMECEVH--GNT 312 (382)
T ss_dssp TCHHHHHHHHHHCS--SCEEECSSC-SSHHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEEEC--CCS
T ss_pred hhHHHHHHHHhhCC--CCEEEeCCc-cCcHHHHHHHHHcCCCCEEeeCchhcCCHHHHHHHHHHHHHcCCeEeec--CCC
Confidence 99999999999998 999999985 56 9999999999999999999999999999999999999999998765 456
Q ss_pred ChhhHHHHHHhhhcC
Q 043137 386 TEDTFIADLSVGLAT 400 (445)
Q Consensus 386 t~~~~~~~la~a~~~ 400 (445)
+. ++||++++..
T Consensus 313 ~~---~~~laaa~~~ 324 (382)
T 1rvk_A 313 AM---NLHVVAATKN 324 (382)
T ss_dssp HH---HHHHHHHCSS
T ss_pred CH---HHHHHHhCCc
Confidence 65 7899888753
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-45 Score=367.48 Aligned_cols=293 Identities=19% Similarity=0.190 Sum_probs=226.3
Q ss_pred eEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+.. +.+ +++++|+|+|| |++|||+++..+ .+.|+++++.++...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td-G~~G~GE~~~~~-------------~~~~~~e~~~~~~~~ 66 (369)
T 2zc8_A 1 MRIEAAELRILELPLKFRFETSFGVQTKRTILLLRLFGE-GLEGLGEGVMER-------------LPLYREETVAGARYL 66 (369)
T ss_dssp CBCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEET-TEEEEEECCCBS-------------SCSSSSCBHHHHHHH
T ss_pred CEEEEEEEEEEeccccCCEEEeeEEEeeCcEEEEEEEEC-CeEEEEEeccCC-------------CCcccCCCHHHHHHH
Confidence 8999999887642 222 35789999995 999999765421 123777888888888
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
+++.+.|.|+|+|+.+++.+|+.|. .+. + +.+|++|||+||||+.||.+|+|||+||| |.. ..
T Consensus 67 i~~~l~~~l~G~d~~~~~~l~~~~~-~~~----------g--~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~~-~~ 129 (369)
T 2zc8_A 67 LEEVFLPRVLGRDLPNPEALREALA-PFR----------G--NPMAKAVLEMAFFDLWAKALGRPLWQVLG---GVR-QA 129 (369)
T ss_dssp HHHTHHHHHTTCBCSSHHHHHHHHT-TSC----------S--CHHHHHHHHHHHHHHHHHHTTSBHHHHHT---CCC-SE
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHH-Hhc----------C--ChHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCC-Cc
Confidence 9888999999999999999988775 332 1 25799999999999999999999999999 863 45
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGL 230 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l 230 (445)
+|++ |++ |.+. +. +...+++.+...++|+.+| .|.| + +.+.+.+
T Consensus 130 ~~~~-~~~---g~~~----~~---------~~~~~~a~~~~~~G~~~iK----ik~~-------------~--~~d~~~v 173 (369)
T 2zc8_A 130 VEVG-VSL---GIQP----SV---------EDTLRVVERHLEEGYRRIK----LKIK-------------P--GWDYEVL 173 (369)
T ss_dssp EEBC-EEE---CCCS----SH---------HHHHHHHHHHHHTTCSCEE----EECB-------------T--TBSHHHH
T ss_pred eece-EEe---cCCC----CH---------HHHHHHHHHHHHhhhheee----eecC-------------h--hHHHHHH
Confidence 6665 332 2110 11 1223444444444454443 2211 2 2346667
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHH
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWE 310 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~ 310 (445)
+++|+++ +++.|++|+| +.|+.++ +++ .+.++++++.|||||++++|++
T Consensus 174 ~avr~a~------~~~~l~vDan-----------------------~~~~~~~-~~~-~~~l~~~~i~~iEqP~~~~d~~ 222 (369)
T 2zc8_A 174 KAVREAF------PEATLTADAN-----------------------SAYSLAN-LAQ-LKRLDELRLDYIEQPLAYDDLL 222 (369)
T ss_dssp HHHHHHC------TTSCEEEECT-----------------------TCCCGGG-HHH-HHGGGGGCCSCEECCSCTTCSH
T ss_pred HHHHHHc------CCCeEEEecC-----------------------CCCCHHH-HHH-HHHHHhCCCcEEECCCCcccHH
Confidence 6666553 5788999993 5678888 887 5568999999999999999999
Q ss_pred HHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH
Q 043137 311 HYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF 390 (445)
Q Consensus 311 ~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~ 390 (445)
++++|+++++ +||++||+. +++++++++++.+++|++|||++++||||++++++++|+++|+++|++|+ .|+.++.
T Consensus 223 ~~~~l~~~~~--ipIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~-~es~i~~ 298 (369)
T 2zc8_A 223 DHAKLQRELS--TPICLDESL-TGAEKARKAIELGAGRVFNVKPARLGGHGESLRVHALAESAGIPLWMGGM-LEAGVGR 298 (369)
T ss_dssp HHHHHHHHCS--SCEEESTTC-CSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEEECCC-CCCHHHH
T ss_pred HHHHHHhhCC--CCEEEcCcc-CCHHHHHHHHHhCCCCEEEEchhhhCCHHHHHHHHHHHHHcCCcEEecCc-cccHHHH
Confidence 9999999998 999999985 77999999999999999999999999999999999999999999999995 5887776
Q ss_pred HHHHHhh
Q 043137 391 IADLSVG 397 (445)
Q Consensus 391 ~~~la~a 397 (445)
.+.++++
T Consensus 299 aa~~hla 305 (369)
T 2zc8_A 299 AHNLHLA 305 (369)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 5544444
|
| >4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=366.00 Aligned_cols=296 Identities=16% Similarity=0.162 Sum_probs=219.0
Q ss_pred ceEEEEEEEEEEecC---------CC----CceEEEEEEeCCCceEEEec-cCCCccccccceeeccCCCCCCCccHHHH
Q 043137 2 AITITAVKARQIFDS---------RG----NPTVEVDVTTSDGHVARAAV-PSGASTGIYEALELRDGGSDYLGKGVSKA 67 (445)
Q Consensus 2 ~mkI~~v~~~~v~~~---------~g----~~~v~V~v~td~G~~G~g~~-~~~~~~g~~e~~~~~~~~~~y~~~~~~~a 67 (445)
+|||++|+++.+..+ .+ +..++|+|+||+|++|||++ |.++. |.......+
T Consensus 9 sMKI~~I~~~~~~lPl~~~p~~~a~g~~~~~~~~lV~v~td~G~~G~GE~~~~~~~---------------~~~~~~~~~ 73 (376)
T 4h2h_A 9 SLKIAEIQLFQHDLPVVNGPYRIASGDVWSLTTTIVKIIAEDGTIGWGETCPVGPT---------------YAEAHAGGA 73 (376)
T ss_dssp CCBEEEEEEEEEEEEBTTCCBCCTTCCBSEEEEEEEEEEETTSCEEEEEECCSSSS---------------SSSCCHHHH
T ss_pred CeEEeEEEEEEEecccCCCCeEecCEEEEEEEEEEEEEEECCCCEEEEeecCCCCC---------------cchhhHHHH
Confidence 599999999887432 12 34689999999999999964 44322 333334444
Q ss_pred HHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCC
Q 043137 68 VSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNK 147 (445)
Q Consensus 68 ~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~ 147 (445)
.. +.+.+.|.|+|+|+.+++..++... .+.+ ..+|+||||+||||+.||.+|+|||+||| |+.
T Consensus 74 ~~-~~~~l~~~l~g~d~~~~~~~~~~~~-~~~~------------~~~A~said~ALwDl~gK~~g~Pl~~LLG---G~~ 136 (376)
T 4h2h_A 74 LA-ALEVLASGLAGAEALPLPLHTRMDS-LLCG------------HNYAKSALDIAVHDLWGKRLGVPVHELLG---GAL 136 (376)
T ss_dssp HH-HHHHHHHTTTTCBSSHHHHHHHHHH-HCSC------------CHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCS
T ss_pred HH-HHHHHHHHhcCCccCcHHHHHHHHH-hhcc------------cHHHHHHHHHhhhHHHHHhcCCCceecCC---CCc
Confidence 44 4467999999999998875543333 2211 14699999999999999999999999999 988
Q ss_pred cceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChH
Q 043137 148 NLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENK 227 (445)
Q Consensus 148 ~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~ 227 (445)
++++|++.. ++.. + +++..+++.+...++|+++| .|+|. .+.+.+.
T Consensus 137 r~~v~~y~s--~~~~-------~---------~~~~~~~a~~~~~~G~~~~K----iKvg~------------~~~~~di 182 (376)
T 4h2h_A 137 TDSVSSYYS--LGVM-------E---------PDEAARQALEKQREGYSRLQ----VKLGA------------RPIEIDI 182 (376)
T ss_dssp CSEEECEEE--ECSC-------C---------HHHHHHHHHHHHHHTCSEEE----EECCS------------SCHHHHH
T ss_pred CCceeEeee--cccC-------C---------HHHHHHHHHHHHhcCceEEE----EecCC------------CCHHHHH
Confidence 888888543 3211 1 12334556555555665544 45441 1122334
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcC
Q 043137 228 EGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQD 307 (445)
Q Consensus 228 ~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~ 307 (445)
++++.+|++++ | +++.|++|+ |+.||.++++++. +.++++++ |||||++
T Consensus 183 ~~v~~vr~a~~--g--~~~~l~vDa-----------------------N~~~~~~~A~~~~-~~l~~~~~-~iEeP~~-- 231 (376)
T 4h2h_A 183 EAIRKVWEAVR--G--TGIALAADG-----------------------NRGWTTRDALRFS-RECPDIPF-VMEQPCN-- 231 (376)
T ss_dssp HHHHHHHHHHT--T--SCCEEEEEC-----------------------TTCCCHHHHHHHH-HHCTTSCE-EEESCSS--
T ss_pred HHHHHHHhhcc--C--CeeEEEEee-----------------------ccCCCHHHHHHHH-HHHhhccc-cccCCcc--
Confidence 55555555442 5 589999999 3678999999884 56788887 9999995
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCCh
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETE 387 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~ 387 (445)
+++++++|++.++ +||++||+. .++++++++++.+++|++|||++++||+|++++++++|+++|++++++| +.++.
T Consensus 232 ~~~~~~~l~~~~~--~pia~dE~~-~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~~~-~~~~~ 307 (376)
T 4h2h_A 232 SFEDLEAIRPLCH--HALYMDEDG-TSLNTVITAAATSLVDGFGMKVSRIGGLQHMRAFRDFCAARNLPHTCDD-AWGGD 307 (376)
T ss_dssp SHHHHHHHGGGCC--SCEEESTTC-CSHHHHHHHHHTTCCSEECCBHHHHTSHHHHHHHHHHHHHHTCCEECBC-SSCSH
T ss_pred hhhhHhhhhhccc--CccccCccc-CCHHHHHHHHHhhccCccccccceeCCcHHHHHHHHHHHHcCCCEEeCC-CCccH
Confidence 6889999999988 999999985 6799999999999999999999999999999999999999999987766 45676
Q ss_pred hhH--HHHHHhhh
Q 043137 388 DTF--IADLSVGL 398 (445)
Q Consensus 388 ~~~--~~~la~a~ 398 (445)
++. .+|++.+.
T Consensus 308 i~~aa~~hlaa~~ 320 (376)
T 4h2h_A 308 IVSAACTHIASTV 320 (376)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhC
Confidence 654 45555543
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=367.97 Aligned_cols=301 Identities=19% Similarity=0.239 Sum_probs=223.0
Q ss_pred ceEEEEEEEEEEec--------CCC----------CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCcc
Q 043137 2 AITITAVKARQIFD--------SRG----------NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKG 63 (445)
Q Consensus 2 ~mkI~~v~~~~v~~--------~~g----------~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~ 63 (445)
.|||++|+++.+.. +.+ +++++|+|+||+|++|||+++... +.+
T Consensus 12 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~~~~----------------~~~-- 73 (393)
T 2og9_A 12 SDRITWVRISSCYLPLATPISDAKVLTGRQKPMTEIAILFAEIETAGGHQGLGFSYSKR----------------AGG-- 73 (393)
T ss_dssp CCCEEEEEEEEEEEECSSCCC------------CEEEEEEEEEEETTSCEEEEEEEEES----------------TTH--
T ss_pred CCeEeEEEEEEEeccCCCccccccccccccCCcCCccEEEEEEEECCCCEEEEEecCcc----------------cch--
Confidence 38999999988842 111 356899999999999999875421 111
Q ss_pred HHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccc
Q 043137 64 VSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAEL 143 (445)
Q Consensus 64 ~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~ 143 (445)
......++ .++|.|+|+||.+++.+|+.|. .... .+|.+++..+|++|||+||||+.||.+|+|||+|||
T Consensus 74 -~~~~~~i~-~l~~~l~G~d~~~~~~i~~~l~-~~~~-----~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~llG-- 143 (393)
T 2og9_A 74 -PGQFAHAR-EIAPALIGEDPSDIAKLWDKLC-WAGA-----SAGRSGLSTQAIGAFDVALWDLKAKRAGLSLAKLLG-- 143 (393)
T ss_dssp -HHHHHHHH-HHGGGGTTSCTTCHHHHHHHHH-HTTG-----GGCSSSHHHHHHHHHHHHHHHHHHHHTTCBHHHHHC--
T ss_pred -HHHHHHHH-HHHHHHcCCChhhHHHHHHHHH-Hhhh-----hcCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhC--
Confidence 22233344 6999999999999999999998 4321 122344567899999999999999999999999999
Q ss_pred cCCCcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCc
Q 043137 144 SGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNI 223 (445)
Q Consensus 144 ~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~ 223 (445)
|. ++++|+ |+++ |+.+. .+. +...+++.+...++|+.+| .|.|. .+.
T Consensus 144 -g~-~~~vp~--y~~~-g~~~~---~~~---------e~~~~~a~~~~~~Gf~~vK----ik~g~------------~~~ 190 (393)
T 2og9_A 144 -SY-RDSVRC--YNTS-GGFLH---TPI---------DQLMVNASASIERGIGGIK----LKVGQ------------PDG 190 (393)
T ss_dssp -CS-CSEEEE--EBCT-TCCTT---SCH---------HHHHHHHHHHHHTTCCCEE----EECCC------------SCH
T ss_pred -CC-CCceEE--EEEC-CCcCC---CCH---------HHHHHHHHHHHHcCCCEEE----EecCC------------CCH
Confidence 86 556665 5543 22110 111 1223444444334454433 23221 122
Q ss_pred cChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECC
Q 043137 224 QENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDP 303 (445)
Q Consensus 224 ~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP 303 (445)
+.+.+.++++|+++ | +++.|++|+| ++||.+++++++ +.++++++.|||||
T Consensus 191 ~~~~e~v~avR~av---g--~d~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~i~~iE~P 241 (393)
T 2og9_A 191 ALDIARVTAVRKHL---G--DAVPLMVDAN-----------------------QQWDRPTAQRMC-RIFEPFNLVWIEEP 241 (393)
T ss_dssp HHHHHHHHHHHHHH---C--TTSCEEEECT-----------------------TCCCHHHHHHHH-HHHGGGCCSCEECC
T ss_pred HHHHHHHHHHHHHc---C--CCCEEEEECC-----------------------CCCCHHHHHHHH-HHHHhhCCCEEECC
Confidence 33455666555554 6 5899999993 578899999985 56899999999999
Q ss_pred CCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCC
Q 043137 304 FDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRS 383 (445)
Q Consensus 304 ~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~ 383 (445)
++++|++++++|+++++ +||++||+. .++++++++++.+++|+|++|++++||||++++++++|+++|++++ +|++
T Consensus 242 ~~~~~~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~-~h~~ 317 (393)
T 2og9_A 242 LDAYDHEGHAALALQFD--TPIATGEML-TSAAEHGDLIRHRAADYLMPDAPRVGGITPFLKIASLAEHAGLMLA-PHFA 317 (393)
T ss_dssp SCTTCHHHHHHHHHHCS--SCEEECTTC-CSHHHHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCEEC-CCSC
T ss_pred CCcccHHHHHHHHHhCC--CCEEeCCCc-CCHHHHHHHHHCCCCCEEeeCccccCCHHHHHHHHHHHHHcCCEEe-ccCc
Confidence 99999999999999998 999999985 6799999999999999999999999999999999999999999986 4544
Q ss_pred CCChhhHHHHHHhhhcC
Q 043137 384 GETEDTFIADLSVGLAT 400 (445)
Q Consensus 384 ~et~~~~~~~la~a~~~ 400 (445)
.+ ..+||++++..
T Consensus 318 ~~----~~~~laaa~~~ 330 (393)
T 2og9_A 318 ME----LHVHLAAAYPR 330 (393)
T ss_dssp HH----HHHHHHHTSSS
T ss_pred cH----HHHHHHhhCCC
Confidence 43 46898887653
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-45 Score=365.16 Aligned_cols=296 Identities=18% Similarity=0.204 Sum_probs=222.8
Q ss_pred eEEEEEEEEEEe--------cCCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIF--------DSRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~--------~~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+. .+.+ +++++|+|+||+|++|||+++... +++. ++.+.
T Consensus 4 mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G~~G~Ge~~~~~------------------~~~~-~~~~~ 64 (359)
T 1mdl_A 4 VLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYT------------------PVAL-KSLKQ 64 (359)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECSS------------------GGGH-HHHHH
T ss_pred CEEEEEEEEEEEcCCCCCccccccccccccEEEEEEEeCCCCEEEEEeecCC------------------CchH-HHHHH
Confidence 899999998773 2333 246899999999999999765321 2233 55667
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
+++.++|.|+|+||.+++.+ +.|.+... + .++.++..+|++|||+||||+.||.+|+|||+||| |. +++
T Consensus 65 i~~~l~~~l~g~d~~~~~~~-~~l~~~~~---~---~~~~~~~~~a~~aid~Al~Dl~~k~~g~Pl~~llG---g~-~~~ 133 (359)
T 1mdl_A 65 LLDDMAAMIVNEPLAPVSLE-AMLAKRFC---L---AGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLG---AN-ARP 133 (359)
T ss_dssp HHHHHHHHHTTSBSCHHHHH-HHHHHHTT---T---TCSSHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTT---CC-CCC
T ss_pred HHHHHHHHHCCCCccchHHH-HHHHHHHH---h---hccCchHHHHHHHHHHHHHHHhhhhcCCcHHHHhC---CC-CCC
Confidence 87789999999999999999 88873321 1 11223457899999999999999999999999999 86 566
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGL 230 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l 230 (445)
+|++. ++ |.. +.+ ...+++.+...++|+.+| .|.|. .+.+.+.+.+
T Consensus 134 vp~~~--~~--g~~-----~~~---------~~~~~a~~~~~~Gf~~iK----ik~g~------------~~~~~~~e~v 179 (359)
T 1mdl_A 134 VQAYD--SH--SLD-----GVK---------LATERAVTAAELGFRAVK----TRIGY------------PALDQDLAVV 179 (359)
T ss_dssp EEEEE--EC--CSC-----HHH---------HHHHHHHHHHHTTCSEEE----EECCC------------SSHHHHHHHH
T ss_pred eeeee--ec--CCC-----CHH---------HHHHHHHHHHHcCCCEEE----EecCC------------CCHHHHHHHH
Confidence 77643 32 210 111 123344444334444433 23321 1223345566
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHH
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWE 310 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~ 310 (445)
+.+|+++ | +++.|++|+| ++||.+++++++ +.++++++.|||||++++|++
T Consensus 180 ~avr~a~---g--~~~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~i~~iE~P~~~~~~~ 230 (359)
T 1mdl_A 180 RSIRQAV---G--DDFGIMVDYN-----------------------QSLDVPAAIKRS-QALQQEGVTWIEEPTLQHDYE 230 (359)
T ss_dssp HHHHHHH---C--SSSEEEEECT-----------------------TCSCHHHHHHHH-HHHHHHTCSCEECCSCTTCHH
T ss_pred HHHHHHh---C--CCCEEEEECC-----------------------CCCCHHHHHHHH-HHHHHhCCCeEECCCChhhHH
Confidence 6555554 5 5899999993 578889999885 568999999999999999999
Q ss_pred HHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH
Q 043137 311 HYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF 390 (445)
Q Consensus 311 ~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~ 390 (445)
++++|+++++ +||++||+. .++++++++++.+++|++++|++++||+|++++++++|+++|+++++++ +. + +
T Consensus 231 ~~~~l~~~~~--iPI~~de~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~g~~~~~~~-~~-~---a 302 (359)
T 1mdl_A 231 GHQRIQSKLN--VPVQMGENW-LGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPMSSHL-FQ-E---I 302 (359)
T ss_dssp HHHHHHHTCS--SCEEECTTC-CSHHHHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHHHHTTCCBCCBS-CH-H---H
T ss_pred HHHHHHHhCC--CCEEeCCCC-CCHHHHHHHHHcCCCCEEeecchhhCCHHHHHHHHHHHHHcCCeEeecc-HH-H---H
Confidence 9999999988 999999985 6699999999999999999999999999999999999999999987664 32 2 6
Q ss_pred HHHHHhhhc
Q 043137 391 IADLSVGLA 399 (445)
Q Consensus 391 ~~~la~a~~ 399 (445)
.+|+++++.
T Consensus 303 ~~~laaa~~ 311 (359)
T 1mdl_A 303 SAHLLAATP 311 (359)
T ss_dssp HHHHHHTCT
T ss_pred HHHHHHhCC
Confidence 788887765
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* 4gyp_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=371.57 Aligned_cols=314 Identities=16% Similarity=0.121 Sum_probs=219.4
Q ss_pred ceEEEEEEEEEEecC--C-----C-----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHH
Q 043137 2 AITITAVKARQIFDS--R-----G-----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVS 69 (445)
Q Consensus 2 ~mkI~~v~~~~v~~~--~-----g-----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~ 69 (445)
+||||+|+++.|.-+ . | ...++|+|+||+|++|||+++.+ .....
T Consensus 8 ~~~It~v~v~~v~~~d~~~~~~~g~h~~~~~~~iV~v~td~Gi~G~GE~~~~-----------------------~~v~~ 64 (455)
T 3pfr_A 8 VPVITDMKVIPVAGHDSMLMNVGGAHSPYFTRNIVILTDNSGHTGVGEAPGG-----------------------ATIEN 64 (455)
T ss_dssp CCBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEECS-----------------------HHHHH
T ss_pred CCEEEEEEEEEeccCCccccccccCCCCcceEEEEEEEECCCCEEEEeCCCc-----------------------HHHHH
Confidence 379999999998522 1 1 12468999999999999986421 12233
Q ss_pred HHHHhHhhhhcCCCCCCHHHHHHHHHH--HhccCCCccccccccc-----chhhHHHHHHHHHHHHHHhcCCchhhhhcc
Q 043137 70 NVNAIIGPALAGKDPTEQTAIDNYMVQ--QLDGTVNEWGWCKQKL-----GANAILAVSLAVCKAGAHVKKIPLYKHIAE 142 (445)
Q Consensus 70 ~i~~~l~p~LiG~d~~~~e~i~~~l~~--~l~~~~~~~~~~~~~~-----~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~ 142 (445)
.|+ .++|.|+|+||.+++++|+.|++ .+.+.. .|..+. ..+|+||||+||||+.||.+|+|||+|||
T Consensus 65 ~i~-~l~p~LiG~dp~~ie~i~~~~~~~~~~~~~~----~g~~G~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLG- 138 (455)
T 3pfr_A 65 ALT-EAIPHVVGRPISILNKIVNDMHNGYLDADYD----TFGKGAWTFELRVNAVAALEAALLDLMGQFLGVPVAELLG- 138 (455)
T ss_dssp HHH-HHGGGTTTCBGGGHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHHHHTSBGGGGST-
T ss_pred HHH-HHHHHhcCCChhHHHHHHHHHHhhccccccC----CCCcccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhC-
Confidence 454 58999999999999999999983 111000 001111 16899999999999999999999999999
Q ss_pred ccC-CCcceeeeeeEEeecCcccCCCCcccc-e------ee-----eccCChhcHHHHHHHHH-HHHHHHHHHHHhhcCC
Q 043137 143 LSG-NKNLVLPVPAFNVINGGSHAGNKLAMQ-E------FM-----ILPVGASCFKEAMKMGV-EVYHHLKAVIKKKYGQ 208 (445)
Q Consensus 143 ~~G-~~~~~vp~~~~~~~~gg~~~~~~~~~~-e------~~-----~~p~~~~~~~~a~~~~~-~~~~~~k~~lk~k~G~ 208 (445)
| +.|+++|+|.+....|.. ....+... . .+ ..-.+++.++++.+... ++|+++| .|+|.
T Consensus 139 --gG~~r~~v~~y~~~~~~gd~-~~~~~~~~~s~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~K----lKvG~ 211 (455)
T 3pfr_A 139 --PGKQRDEVTVLGYLFYVGDD-KITDLPYQQPVTGKHEWYDIRRKKAMDTQAVIELAAASKDRYGFKDFK----LKGGV 211 (455)
T ss_dssp --TSCCCSEEEBCEEECCBCCG-GGSCSCCCCCCCSSCTHHHHTTSCBCSHHHHHHHHHHHHHHHCCSCEE----EECSS
T ss_pred --CCCcCCeEEEeeeecccccc-ccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEE----EcCCC
Confidence 5 567889987654222210 00000000 0 00 00012223344443332 2454443 34331
Q ss_pred CCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHH
Q 043137 209 DATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLY 288 (445)
Q Consensus 209 ~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~ 288 (445)
.+.+.+.++++ ++|+++ +++.|++|+ |+.||.++++++
T Consensus 212 ------------~~~~~Di~~v~----avRea~--pd~~L~vDa-----------------------N~~w~~~~A~~~- 249 (455)
T 3pfr_A 212 ------------FEGSKEIDTVI----ELKKHF--PDARITLDP-----------------------NGCWSLDEAIQL- 249 (455)
T ss_dssp ------------SCHHHHHHHHH----HHHHHC--TTCCEEEEC-----------------------TTBSCHHHHHHH-
T ss_pred ------------CCHHHHHHHHH----HHHHhC--CCCeEeecC-----------------------CCCCCHHHHHHH-
Confidence 11222344444 455544 689999999 467899999987
Q ss_pred HHhhccCCeeeEECCCCcCC----HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHH
Q 043137 289 KSFISDYPIVSIEDPFDQDD----WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESI 364 (445)
Q Consensus 289 ~~~l~~~~i~~iEdP~~~~D----~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~ 364 (445)
.+.++++ +.|||||++++| ++++++|+++++ +||++||+ +++..+++++++.+++|++|+|+ ++||||+++
T Consensus 250 ~~~L~~~-l~~iEeP~~~~d~~~~~~~~~~l~~~~~--iPIa~dE~-~~~~~~~~~~i~~~a~di~~~d~-~~GGit~a~ 324 (455)
T 3pfr_A 250 CKGLNDV-LTYAEDPCIGENGYSGREIMAEFRRRTG--IPTATNMI-ATNWREMCHAIMLQSVDIPLADP-HFWTLTGAS 324 (455)
T ss_dssp HTTCTTT-CSEEESCBCCBTTBCHHHHHHHHHHHHC--CCEEESSS-CCSHHHHHHHHHHTCCSEEBCCH-HHHCHHHHH
T ss_pred HHhhccc-ceeeecCCChhhccchHHHHHHHHhcCC--CCEEeCCC-cCCHHHHHHHHHcCCCCEEEecC-CcCCHHHHH
Confidence 5678899 999999999999 799999999999 99999997 57799999999999999999998 799999999
Q ss_pred HHHHHHHHcCCcEEecCCCCCChhh--HHHHHHhhhc
Q 043137 365 EAVRMSKQAGWGVMASHRSGETEDT--FIADLSVGLA 399 (445)
Q Consensus 365 ~ia~~A~~~g~~~~~~~~~~et~~~--~~~~la~a~~ 399 (445)
+++++|+++|+++ .+|++.++.++ +++||+++++
T Consensus 325 kia~lA~a~gv~~-~~h~~~~~~i~~aa~~hlaaa~p 360 (455)
T 3pfr_A 325 RVAQLCNEWGLTW-GCHSNNHFDISLAMFSHVGAAAP 360 (455)
T ss_dssp HHHHHHHHTTCCC-BCCCCSCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCEE-EecCCcccHHHHHHHHHHHHhCC
Confidence 9999999999996 66766677655 4567776654
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-45 Score=370.78 Aligned_cols=297 Identities=16% Similarity=0.165 Sum_probs=217.7
Q ss_pred CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCC------------CC
Q 043137 19 NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDP------------TE 86 (445)
Q Consensus 19 ~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~------------~~ 86 (445)
+++++|+| ||+|++|||++...+ .|.++++..+...++ .+.|.|+|+|| .+
T Consensus 30 ~~~v~V~v-td~G~~G~GE~~~~~---------------~~~~e~~~~~~~~l~-~~~~~l~g~d~~~~~~~~~~~~~~~ 92 (377)
T 2pge_A 30 KPTWFVRL-DIDGHGGQGEVSLIP---------------GLSLDPEEQIGRELD-LLARRLRAEEPIRLRQFLAERGGAD 92 (377)
T ss_dssp ECEEEEEE-EETTEEEEEEEECCT---------------TTCSSCHHHHHHHHH-HHHHHHHHSCCHHHHHHHHHTSSCT
T ss_pred cceEEEEE-EcCCCEEEEEeccCC---------------CCCcCCHHHHHHHHH-HHHHHHhCCCccchhhhhhcccccc
Confidence 46799999 999999999653211 255667777777787 68999999988 45
Q ss_pred HHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCC
Q 043137 87 QTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAG 166 (445)
Q Consensus 87 ~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~ 166 (445)
++.+|+.|. .++++.++|..+......+|++|||+||||+.||.+|+|||+||| |. ++++|+|. +++++
T Consensus 93 ~~~l~~~l~-~~~~~~~~~~~~~~~~~~~a~~aid~Al~Dl~ak~~g~Pl~~llG---g~-~~~vp~~~--~i~~~---- 161 (377)
T 2pge_A 93 FSDYRSVLT-DIAGILDSWQVSTDGRFPALRFALEMALLDLLSGGRQEWFASDFT---RG-EKRIPVNG--LIWMG---- 161 (377)
T ss_dssp TSCHHHHHH-HHHHHHHHTTSSTTSSCHHHHHHHHHHHHHHHHTSSSCSSCSTTT---TT-SCCEEBCE--EECCC----
T ss_pred HHHHHHhhh-hhhhhhhhcccccccccHHHHHHHHHHHHHHHHHHcCCCHHHHhC---CC-CCeEEEeE--EecCC----
Confidence 577777775 332211112222233457899999999999999999999999999 86 56777755 34322
Q ss_pred CCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCe
Q 043137 167 NKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKV 246 (445)
Q Consensus 167 ~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i 246 (445)
++ + ..++++.+...++|+++| .|+|. .+ ..+.++.++.+.+.+|+ +++
T Consensus 162 ---~~-e--------~~~~~a~~~~~~G~~~~K----~Kvg~------------~~---~~~d~~~v~avr~~~g~-~~~ 209 (377)
T 2pge_A 162 ---EA-A--------FMQEQIEAKLAEGYGCLK----LKIGA------------ID---FDKECALLAGIRESFSP-QQL 209 (377)
T ss_dssp ---CH-H--------HHHHHHHHHHHTTCSEEE----EEC---------------C---HHHHHHHHHHHHHHSCT-TTC
T ss_pred ---CH-H--------HHHHHHHHHHHHhhhhhe----eecCC------------CC---hHHHHHHHHHHHHHcCC-CCc
Confidence 11 1 223455555555665554 34331 11 24445555332223452 379
Q ss_pred EEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEE
Q 043137 247 VIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIV 326 (445)
Q Consensus 247 ~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~ 326 (445)
.|++|+| +.||.+++++++ +.+++|++.|||||++++|+++|++|+++++ +||+
T Consensus 210 ~l~vDaN-----------------------~~~~~~~a~~~~-~~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~--ipIa 263 (377)
T 2pge_A 210 EIRVDAN-----------------------GAFSPANAPQRL-KRLSQFHLHSIEQPIRQHQWSEMAALCANSP--LAIA 263 (377)
T ss_dssp EEEEECT-----------------------TBBCTTTHHHHH-HHHHTTCCSEEECCBCSSCHHHHHHHHHHCS--SCEE
T ss_pred eEEEECC-----------------------CCCCHHHHHHHH-HHHhcCCCcEEEccCCcccHHHHHHHHhhCC--CcEE
Confidence 9999993 567888999885 6789999999999999999999999999998 9999
Q ss_pred eCcccccCHHH--HHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCcc
Q 043137 327 GDDLLVTNPKR--VEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQI 403 (445)
Q Consensus 327 gde~~~~~~~~--~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~ 403 (445)
+||+.++ ..+ ++++++.+++|++|||++++||||++++++++|+++|++++++|+ .||+++.++.++++...+..
T Consensus 264 ~dE~~~~-~~~~~~~~~i~~~a~d~i~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~-~es~i~~~a~~hlaa~~~~~ 340 (377)
T 2pge_A 264 LDEELIG-LGAEQRSAMLDAIRPQYIILKPSLLGGFHYAGQWIELARERGIGFWITSA-LESNLGLAAIAQWTALYQPT 340 (377)
T ss_dssp ESGGGTT-CCTHHHHHHHHHHCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEBCC-SCCHHHHHHHHHHHHTTCCS
T ss_pred ECCccCC-cchHHHHHHHHhCCCCEEEECchhcCCHHHHHHHHHHHHHCCCeEEecCC-cccHHHHHHHHHHHHCCCCC
Confidence 9998655 566 889999999999999999999999999999999999999998885 78988766655555444443
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=365.58 Aligned_cols=298 Identities=15% Similarity=0.194 Sum_probs=221.1
Q ss_pred Cc-eEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCc-cHHH
Q 043137 1 MA-ITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGK-GVSK 66 (445)
Q Consensus 1 ~~-mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~-~~~~ 66 (445)
|+ |||++|+++.+.. +.+ +++++|+|+||+|++|||+++. ++ +.
T Consensus 1 m~~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~Ge~~~--------------------~~~~~-- 58 (384)
T 2pgw_A 1 MSLVKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTV--------------------APDQT-- 58 (384)
T ss_dssp ---CCEEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEEEETTSCEEEEEEEC--------------------TTCHH--
T ss_pred CCCCEEEEEEEEEEecccCccceeccceeeeceEEEEEEEECCCCEEEEccCC--------------------CchHH--
Confidence 77 7999999987732 222 3578999999999999997752 11 12
Q ss_pred HHHHHHHhHhhhhcCCCCCCHHHHHHH-HHHHhccCCCcccccc---cccchhhHHHHHHHHHHHHHHhcCCchhhhhcc
Q 043137 67 AVSNVNAIIGPALAGKDPTEQTAIDNY-MVQQLDGTVNEWGWCK---QKLGANAILAVSLAVCKAGAHVKKIPLYKHIAE 142 (445)
Q Consensus 67 a~~~i~~~l~p~LiG~d~~~~e~i~~~-l~~~l~~~~~~~~~~~---~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~ 142 (445)
+...|++.++|.|+|+||.+++.+|+. |++... + .|+ .. ..+|++|||+||||+.||.+|+|||+|||
T Consensus 59 ~~~~i~~~l~~~l~g~d~~~~~~~~~~~l~~~~~---~---~g~~~~~~-~~~a~~aid~AlwDl~~k~~g~Pl~~llG- 130 (384)
T 2pgw_A 59 GTAAILYRLAKHLVGHSPHDVAPLIARIFHQEYL---G---HGANIMRA-ANQIFSGIDMAMWDLQGKLAGLPVHQLLG- 130 (384)
T ss_dssp HHHHHHHHHHGGGTTSCGGGHHHHHHHHHHHHTG---G---GTCCCHHH-HHHHHHHHHHHHHHHHHHHHTSBGGGTTT-
T ss_pred HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHhh---h---cccccccc-cHHHHHHHHHHHHHHHHhHcCCCHHHHcC-
Confidence 455677789999999999999999998 853321 1 111 11 46899999999999999999999999999
Q ss_pred ccCCCcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCC
Q 043137 143 LSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPN 222 (445)
Q Consensus 143 ~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~ 222 (445)
|..++++|++ .+++++ +.+ ...+++.+...++|+.+| .|.| + +
T Consensus 131 --g~~~~~v~~~--~~~~~~-------~~e---------~~~~~a~~~~~~Gf~~iK----ik~g----------~---~ 173 (384)
T 2pgw_A 131 --GAHRKAVGYF--YFLQGE-------TAE---------ELARDAAVGHAQGERVFY----LKVG----------R---G 173 (384)
T ss_dssp --CCSSSEEEBC--EECCCS-------SHH---------HHHHHHHHHHHTTCCEEE----EECC----------S---C
T ss_pred --CCCCCceEEE--EECCCC-------CHH---------HHHHHHHHHHHcCCCEEE----ECcC----------C---C
Confidence 8766777764 333221 111 123344443333443332 2322 1 2
Q ss_pred ccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEEC
Q 043137 223 IQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIED 302 (445)
Q Consensus 223 ~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEd 302 (445)
.+.+.+.++ ++|++ . +++.|++|++ ++||.++++++ .+.++++++.||||
T Consensus 174 ~~~~~e~v~----avr~a-~-gd~~l~vD~n-----------------------~~~~~~~a~~~-~~~l~~~~i~~iEq 223 (384)
T 2pgw_A 174 EKLDLEITA----AVRGE-I-GDARLRLDAN-----------------------EGWSVHDAINM-CRKLEKYDIEFIEQ 223 (384)
T ss_dssp HHHHHHHHH----HHHTT-S-TTCEEEEECT-----------------------TCCCHHHHHHH-HHHHGGGCCSEEEC
T ss_pred HHHHHHHHH----HHHHH-c-CCcEEEEecC-----------------------CCCCHHHHHHH-HHHHHhcCCCEEeC
Confidence 222334444 44432 1 3688999993 57888999987 56789999999999
Q ss_pred CCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC
Q 043137 303 PFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 303 P~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~ 382 (445)
|++++|++++++|+++++ +||++||+. .++++++++++.+++|++++|++++||+|++++++++|+++|+++++++
T Consensus 224 P~~~~~~~~~~~l~~~~~--iPI~~de~i-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~- 299 (384)
T 2pgw_A 224 PTVSWSIPAMAHVREKVG--IPIVADQAA-FTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKICIHS- 299 (384)
T ss_dssp CSCTTCHHHHHHHHHHCS--SCEEESTTC-CSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEEECC-
T ss_pred CCChhhHHHHHHHHhhCC--CCEEEeCCc-CCHHHHHHHHHcCCCCEEEEcchhhCCHHHHHHHHHHHHHCCCeEeecc-
Confidence 999999999999999998 999999985 6799999999999999999999999999999999999999999987765
Q ss_pred CCCChhhH--HHHHHhhhc
Q 043137 383 SGETEDTF--IADLSVGLA 399 (445)
Q Consensus 383 ~~et~~~~--~~~la~a~~ 399 (445)
+.|+.++. .+||+.+++
T Consensus 300 ~~es~i~~aa~~hlaaa~~ 318 (384)
T 2pgw_A 300 SFTTGITTCAEHHIGLAIP 318 (384)
T ss_dssp CSCCHHHHHHHHHHHHHCS
T ss_pred CcCCHHHHHHHHHHHHhCC
Confidence 57887765 556655543
|
| >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-44 Score=364.85 Aligned_cols=275 Identities=16% Similarity=0.168 Sum_probs=210.5
Q ss_pred eEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhcc
Q 043137 21 TVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDG 100 (445)
Q Consensus 21 ~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~ 100 (445)
+++|+|+||+|++|||+++.+ ..++..+++.|+|.|+|+||.+++.+|+.|.+...+
T Consensus 71 ~v~V~v~td~G~~G~GE~~~g-----------------------~~~~~~v~~~l~p~LiG~d~~~~~~i~~~m~~~~~~ 127 (415)
T 2p3z_A 71 TLIVEVEAENRQTGFAVSTAG-----------------------EMGCFIVEKHLNRFIEGKCVSDIKLIHDQMLGATMY 127 (415)
T ss_dssp EEEEEEEETTSCEEEEEEECH-----------------------HHHHHHHHHTTHHHHTTSBTTCHHHHHHHHHHHHTT
T ss_pred EEEEEEEECCCCEEEEEecCC-----------------------HHHHHHHHHHHHHHHCCCChhhHHHHHHHHHHhhhc
Confidence 689999999999999977531 223345677899999999999999999999832211
Q ss_pred CCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeeccCC
Q 043137 101 TVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180 (445)
Q Consensus 101 ~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~ 180 (445)
.. |++++..+|++|||+||||+.||.+|+|||+||| |..++++|+ |++ |+ +
T Consensus 128 ~~-----g~~~~~~~A~said~ALwDl~ak~~g~Pl~~lLG---G~~~~~vp~--y~~--g~-------~---------- 178 (415)
T 2p3z_A 128 YS-----GSGGLVMNTISCVDLALWDLFGKVVGLPVYKLLG---GAVRDEIQF--YAT--GA-------R---------- 178 (415)
T ss_dssp TS-----TTSSHHHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCSSSEEEE--EEE--SS-------C----------
T ss_pred cc-----CCCcchHHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCceee--eec--CC-------C----------
Confidence 11 2345667899999999999999999999999999 876777776 443 22 0
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccC
Q 043137 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGS 260 (445)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~ 260 (445)
.+++++ ++|+++| .|.| .++++++. +++.+.++++++|+++ | +++.|++|+|
T Consensus 179 ---~~~~~~---~G~~~~K----iK~g-----~g~~~G~~-~~~~d~~~v~avrea~---G--~~~~L~vDaN------- 230 (415)
T 2p3z_A 179 ---PDLAKE---MGFIGGK----MPTH-----WGPHDGDA-GIRKDAAMVADMREKC---G--PDFWLMLDCW------- 230 (415)
T ss_dssp ---HHHHHH---HTCSEEE----EECC-----CCGGGHHH-HHHHHHHHHHHHHHHH---C--SSSEEEEECT-------
T ss_pred ---HHHHHH---hCcceEE----Eecc-----cCcccccc-cHHHHHHHHHHHHHHh---C--CCCEEEEECC-------
Confidence 122333 2465554 3332 12222221 2233455566555554 6 5899999993
Q ss_pred CceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHH
Q 043137 261 DKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEK 340 (445)
Q Consensus 261 ~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~ 340 (445)
+.||.+++++++. .+++|++.|||||++++|+++|++|+++++.++||++||+. .+++++++
T Consensus 231 ----------------~~~~~~~Ai~~~~-~l~~~~i~~iEqPl~~~d~~~~~~l~~~~~~~ipIa~dE~~-~~~~~~~~ 292 (415)
T 2p3z_A 231 ----------------MSQDVNYATKLAH-ACAPFNLKWIEECLPPQQYEGYRELKRNAPAGMMVTSGEHH-GTLQSFRT 292 (415)
T ss_dssp ----------------TCCCHHHHHHHHH-HHGGGTCCEEECCSCTTCHHHHHHHHHHSCTTCEEEECTTC-CSHHHHHH
T ss_pred ----------------CCCCHHHHHHHHH-HHhhcCCceEeCCCCcchHHHHHHHHHhcCCCCcEEcCCCC-CCHHHHHH
Confidence 5788899999865 58999999999999999999999999998755899999986 56999999
Q ss_pred HHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhc
Q 043137 341 AIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLA 399 (445)
Q Consensus 341 ~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~ 399 (445)
+++.+ +|++|||++++||||++++++++|+++|+++++ |++ ....+|+++++.
T Consensus 293 ~i~~~-~d~i~ik~~~~GGitea~~ia~lA~~~gi~v~~-h~~----~~a~~hlaaa~p 345 (415)
T 2p3z_A 293 LAETG-IDIMQPDVGWCGGLTTLVEIAALAKSRGQLVVP-HGS----SVYSHHAVITFT 345 (415)
T ss_dssp HHHTT-CSEECCCHHHHTCHHHHHHHHHHHHHTTCCBCC-CCC----HHHHHHHHTTCT
T ss_pred HHHcC-CCEEEeCccccCCHHHHHHHHHHHHHcCCEEEe-cCh----HHHHHHHHHhCC
Confidence 99999 999999999999999999999999999999866 533 234678887664
|
| >4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-43 Score=362.79 Aligned_cols=321 Identities=17% Similarity=0.216 Sum_probs=214.9
Q ss_pred EEEEEEEEEEe--cC-----CC--Cce---EEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHH
Q 043137 4 TITAVKARQIF--DS-----RG--NPT---VEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNV 71 (445)
Q Consensus 4 kI~~v~~~~v~--~~-----~g--~~~---v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i 71 (445)
+||++++.+|. |+ .| .|. .+|+|+||+|++|||+++.+ ....+.|
T Consensus 27 ~i~~~~v~pva~~d~~l~~~~g~h~p~f~RtiV~v~Td~Gi~G~GE~~g~-----------------------~~~~~~l 83 (464)
T 4g8t_A 27 IITEMQVIPVAGHDSMLLNLSGAHSPYFTRNIVILKDNSGNTGVGEVPGG-----------------------EKIRQTL 83 (464)
T ss_dssp BEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEECC-----------------------HHHHHHH
T ss_pred EEeEEEEEEecCCCcccccCCcccCCccceEEEEEEECCCCEEEEeCCCc-----------------------HHHHHHH
Confidence 89999999984 32 22 232 47999999999999987531 1223345
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCc---ccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCc
Q 043137 72 NAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNE---WGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKN 148 (445)
Q Consensus 72 ~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~---~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~ 148 (445)
+ .++|.|+|+||.+++.+|+.|++.+...... +..+......+|+||||+||||+.||.+|+|||+|||. |+.|
T Consensus 84 e-~~~p~liG~dp~~ie~i~~~l~~~~~~~~~~g~g~~~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGg--G~~R 160 (464)
T 4g8t_A 84 E-DAKPLVIGKTLGEYKNVMNTVRQTFNDHDAGGRGLQTFDLRTTIHVVTAIEAAMLDLLGQFLGVTVASLLGD--GQQR 160 (464)
T ss_dssp H-HHGGGTTTCBGGGHHHHHHHHHHHTTTSCTTTTCSSSSCCCSHHHHHHHHHHHHHHHHHHHHTSBTGGGSTT--SCCC
T ss_pred H-HHHHHHcCCCHHHHHHHHHHHHHHhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCC--CCCC
Confidence 4 5899999999999999999998544321100 00001123457999999999999999999999999982 4678
Q ss_pred ceeeeeeEEeecCcccCCCCcccc-------eeeecc-CChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCC
Q 043137 149 LVLPVPAFNVINGGSHAGNKLAMQ-------EFMILP-VGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFA 220 (445)
Q Consensus 149 ~~vp~~~~~~~~gg~~~~~~~~~~-------e~~~~p-~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~ 220 (445)
+++|++.+....+.... ..+... ..+... .......+.++...+.+. +.|....|+. -|.
T Consensus 161 d~V~~y~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~Gf~~~KlK-vG~-- 228 (464)
T 4g8t_A 161 DAVEMLGYLFFIGDRKK-TTLAYQNQENDPCDWYRVRHEEAMTPESVVRLAEAAYE--------KYGFNDFKLK-GGV-- 228 (464)
T ss_dssp SEEEBCEEECCBCCGGG-SCSCCCCCTTCSSHHHHHTTSCBCSHHHHHHHHHHHHH--------HHCCSCEEEE-CSS--
T ss_pred ceEEEEEEeeccCcccc-cchhhhcccccccchhhhcccccCCHHHHHHHHHHHHH--------HcCCCeEEEe-CCC--
Confidence 89999876543321100 000000 000000 000011222222211111 1232222211 011
Q ss_pred CCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeE
Q 043137 221 PNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300 (445)
Q Consensus 221 ~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~i 300 (445)
.+ ..+.++.+ +++|++. +|+.|++|+ |+.||.++|+++ .+.++++ +.||
T Consensus 229 ~~---~~~di~~v-~avrea~--pd~~L~vDa-----------------------N~~wt~~~Ai~~-~~~le~~-l~wi 277 (464)
T 4g8t_A 229 LD---GFEEAEAV-TALAKRF--PDARITLDP-----------------------NGAWSLDEAVKI-GKQLKGV-LAYA 277 (464)
T ss_dssp SC---HHHHHHHH-HHHHHHS--TTCCEEEEC-----------------------TTCBCHHHHHHH-HHHTTTT-CSCE
T ss_pred CC---HHHHHHHH-HHHHhhC--CCceEEEEC-----------------------CCccCHHHHHHH-HHHhhhc-ccee
Confidence 11 23344444 3344433 578999999 367899999987 5667888 9999
Q ss_pred ECCCCcCCH----HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCc
Q 043137 301 EDPFDQDDW----EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWG 376 (445)
Q Consensus 301 EdP~~~~D~----~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~ 376 (445)
|||++++|. +.+++|+++++ +||++||+. .++++++++++.+++|++|+| +++||||++++++++|+++|++
T Consensus 278 EeP~~~~d~~~~~e~~a~lr~~~~--iPIa~gE~~-~~~~~~~~~i~~~avdi~~~d-~~~GGit~~~kia~lA~~~gi~ 353 (464)
T 4g8t_A 278 EDPCGAEQGYSGREIMAEFRRATG--LPTATNMIA-TDWRQMGHTISLQSVDIPLAD-PHFWTMQGSIRVAQMCHEWGLT 353 (464)
T ss_dssp ESCBCCBTTBCHHHHHHHHHHHHC--CCEEESSSS-CSHHHHHHHHHHTCCSEEBCC-HHHHCHHHHHHHHHHHHHHTCC
T ss_pred ecCcCcccccchHHHHHhhhccCC--CCccccccc-cchhhHHHHHHhhCCCEEecc-ccccchHHHHHHHHHHHHcCCE
Confidence 999999885 78899999999 999999985 679999999999999999999 5899999999999999999999
Q ss_pred EEecCCCCCChhhH--HHHHHhhh
Q 043137 377 VMASHRSGETEDTF--IADLSVGL 398 (445)
Q Consensus 377 ~~~~~~~~et~~~~--~~~la~a~ 398 (445)
++ .|.+.++.++. ++||+.++
T Consensus 354 v~-~h~~~~~~I~laA~~hlaaa~ 376 (464)
T 4g8t_A 354 WG-SHSNNHFDISLAMFTHVAAAA 376 (464)
T ss_dssp CB-CCCCSCCHHHHHHHHHHHTTC
T ss_pred EE-EcCCcccHHHHHHHHHHHHhC
Confidence 75 45456776654 45665554
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-44 Score=363.35 Aligned_cols=303 Identities=13% Similarity=0.126 Sum_probs=219.2
Q ss_pred CceEEEEEEEEEEecCCC-------CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHH--HHHHHH
Q 043137 1 MAITITAVKARQIFDSRG-------NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVS--KAVSNV 71 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~~g-------~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~--~a~~~i 71 (445)
|.|||++|+++.+..+.. +++++|+|+|| |++|||++++.+ |++++.. .+...|
T Consensus 1 m~mkI~~i~~~~~~~pl~~p~~~s~~~~~~V~v~td-G~~G~GE~~~~~----------------~~~~~~~~~~~~~~i 63 (401)
T 2hzg_A 1 MSLKIDAVDLFYLSMPEVTDAADGSQDALLVRVAAG-GHIGWGECEAAP----------------LPSIAAFVCPKSHGV 63 (401)
T ss_dssp -CCBEEEEEEEEEECSSCCSSSCGGGEEEEEEEEET-TEEEEEEECSCH----------------HHHHHHHHCCCSBTT
T ss_pred CCCEEEEEEEEEEeccCCCccccccceEEEEEEEeC-CcEEEEeeeccc----------------CCcccchhHHHHHHH
Confidence 789999999998864432 35799999999 999999776421 0111111 223346
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccc--cchh--hHHHHHHHHHHHHHHhcCCchhhhhccccCCC
Q 043137 72 NAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQK--LGAN--AILAVSLAVCKAGAHVKKIPLYKHIAELSGNK 147 (445)
Q Consensus 72 ~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~--~~~~--a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~ 147 (445)
++.++|.|+|+ |.+++ +.|.+.... .++.+ +..+ |++|||+||||+.||.+|+|||+||| |..
T Consensus 64 ~~~l~~~l~G~-~~~~~---~~l~~~~~~------~~~~g~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~~ 130 (401)
T 2hzg_A 64 CRPVSDSVLGQ-RLDGP---DDIARIAAL------VGYNSMDLLQAPHMLSGIEMALWDLLGRRLSAPAWALLG---YSA 130 (401)
T ss_dssp BCCGGGGTTTC-BCSSH---HHHHHHHHH------HHHHTTTCTTHHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CSC
T ss_pred HHHHHHHhCCC-CCCHH---HHHHHHHHh------hccCCccchhhHHHHHHHHHHHHHHHHHHhCCcHHHHcC---CCC
Confidence 66789999999 99986 233311110 00011 3367 99999999999999999999999999 876
Q ss_pred cceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCc-cCh
Q 043137 148 NLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNI-QEN 226 (445)
Q Consensus 148 ~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~-~~~ 226 (445)
++++|++.+ +.++. +.+ +..+++.+...++|+.+| .|. ..+ |+ ++ +.+
T Consensus 131 ~~~vp~~~~--~~~~~------~~~---------~~~~~a~~~~~~Gf~~iK----ik~----spv---G~---~~~~~~ 179 (401)
T 2hzg_A 131 SHGKRPYAS--LLFGD------TPQ---------ETLERARAARRDGFAAVK----FGW----GPI---GR---GTVAAD 179 (401)
T ss_dssp CCCBEEEEE--EECCS------SHH---------HHHHHHHHHHHTTCSEEE----EES----TTT---TS---SCHHHH
T ss_pred CCceEeeEE--cCCCC------CHH---------HHHHHHHHHHHhCCCeEE----EcC----CCC---CC---CHHHHH
Confidence 677887543 22210 122 223444444444554443 230 001 21 23 334
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCcc--CHHHHHHHHHHhhccCCeeeEECCC
Q 043137 227 KEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKI--SGDALKDLYKSFISDYPIVSIEDPF 304 (445)
Q Consensus 227 ~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~--t~~~ai~~~~~~l~~~~i~~iEdP~ 304 (445)
.+.++++|+++ | +++.|++|+| ++| |.+++++++ +.++++++.|||||+
T Consensus 180 ~e~v~avr~a~---G--~d~~l~vDan-----------------------~~~~~~~~~a~~~~-~~l~~~~i~~iEqP~ 230 (401)
T 2hzg_A 180 ADQIMAAREGL---G--PDGDLMVDVG-----------------------QIFGEDVEAAAARL-PTLDAAGVLWLEEPF 230 (401)
T ss_dssp HHHHHHHHHHH---C--SSSEEEEECT-----------------------TTTTTCHHHHHTTH-HHHHHTTCSEEECCS
T ss_pred HHHHHHHHHHh---C--CCCeEEEECC-----------------------CCCCCCHHHHHHHH-HHHHhcCCCEEECCC
Confidence 56666666655 5 5899999993 578 889999985 558999999999999
Q ss_pred CcCCHHHHHHHHH-HhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCC
Q 043137 305 DQDDWEHYAKLTS-EVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRS 383 (445)
Q Consensus 305 ~~~D~~~~~~L~~-~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~ 383 (445)
+++|++++++|++ +++ +||++||+. .++++++++++.+++|+++||++++||+|++++++++|+++|++++ +| +
T Consensus 231 ~~~d~~~~~~l~~~~~~--iPI~~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~-~h-~ 305 (401)
T 2hzg_A 231 DAGALAAHAALAGRGAR--VRIAGGEAA-HNFHMAQHLMDYGRIGFIQIDCGRIGGLGPAKRVADAAQARGITYV-NH-T 305 (401)
T ss_dssp CTTCHHHHHHHHTTCCS--SEEEECTTC-SSHHHHHHHHHHSCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEE-EC-C
T ss_pred CccCHHHHHHHHhhCCC--CCEEecCCc-CCHHHHHHHHHCCCCCEEEeCcchhCCHHHHHHHHHHHHHcCCEEe-cC-C
Confidence 9999999999999 887 999999985 5699999999999999999999999999999999999999999976 56 6
Q ss_pred CCChhhHHHHHHhhh
Q 043137 384 GETEDTFIADLSVGL 398 (445)
Q Consensus 384 ~et~~~~~~~la~a~ 398 (445)
.||.++.++.++++.
T Consensus 306 ~es~i~~~a~~hlaa 320 (401)
T 2hzg_A 306 FTSHLALSASLQPFA 320 (401)
T ss_dssp CSCHHHHHHHHGGGT
T ss_pred CCcHHHHHHHHHHHH
Confidence 899887665544443
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-43 Score=357.79 Aligned_cols=306 Identities=17% Similarity=0.175 Sum_probs=219.9
Q ss_pred CceEEEEEEEEEEec------CC----CCceEEEEEEeC---CCceEEEeccCCCccccccceeeccCCCCCCCccHHHH
Q 043137 1 MAITITAVKARQIFD------SR----GNPTVEVDVTTS---DGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKA 67 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~------~~----g~~~v~V~v~td---~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a 67 (445)
|.|||++|+...+-. +. .+++++|+|+|| +|++|||+++.+ ++++++
T Consensus 4 m~mkI~~i~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~~~~G~~G~GE~~~~-----------------~~~~~~--- 63 (392)
T 1tzz_A 4 MSVRIVDVREITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFNS-----------------NGRYGQ--- 63 (392)
T ss_dssp --CCEEEEEEEEEECCC---------CCCEEEEEEEEEEEECSSSEEEEEEECC-----------------TTSCCC---
T ss_pred CCcEEeEEEEEEecCCCcccccccccCcceEEEEEEEECCCCCCCEEEEEecCC-----------------CchHHH---
Confidence 779999999555422 11 235799999999 999999976542 112223
Q ss_pred HHHHHHhHhhhhcCCCC----------CCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchh
Q 043137 68 VSNVNAIIGPALAGKDP----------TEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLY 137 (445)
Q Consensus 68 ~~~i~~~l~p~LiG~d~----------~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~ 137 (445)
...+++.++|.|+|+|| .+++.+|+.|. ......+ ..+..+|++|||+||||+.||.+|+|||
T Consensus 64 ~~~i~~~l~~~l~G~d~~~~~~~~~~~~~~~~i~~~l~-~~~~~~~------~~~~~~a~~aid~AlwDl~ak~~g~Pl~ 136 (392)
T 1tzz_A 64 GGLIRERFASRILEADPKKLLNEAGDNLDPDKVWAAMM-INEKPGG------HGERSVAVGTIDMAVWDAVAKIAGKPLF 136 (392)
T ss_dssp HHHHHHTHHHHHHTSCGGGSBCTTSSSBCHHHHHHHHT-TTCCSCC------CSHHHHHHHHHHHHHHHHHHHHHTSBHH
T ss_pred HHHHHHHHHHHHcCCCchhhhcccccccCHHHHHHHHH-HhccccC------ccHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 33466779999999999 99999999998 4322111 2255789999999999999999999999
Q ss_pred hhhccccCC-CcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCC
Q 043137 138 KHIAELSGN-KNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDE 216 (445)
Q Consensus 138 ~lLG~~~G~-~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~ 216 (445)
+|||..+|. .+.++|+ |++ +++.+.. .+. +...+++.+...++|+.+| .|.| .
T Consensus 137 ~llG~~~~g~~~~~v~~--y~~-~~~~~~~--~~~---------~~~~~~a~~~~~~Gf~~iK----ik~g-------~- 190 (392)
T 1tzz_A 137 RLLAERHGVKANPRVFV--YAA-GGYYYPG--KGL---------SMLRGEMRGYLDRGYNVVK----MKIG-------G- 190 (392)
T ss_dssp HHHHHHTTSCCCCEEEE--EEE-CCCC------CH---------HHHHHHHHHHHTTTCSEEE----EECS-------S-
T ss_pred HHcCCccCCCcCCCeeE--EEe-CCcccCC--CCH---------HHHHHHHHHHHHcCCCEEE----EcCC-------C-
Confidence 999844433 4455655 554 2221110 011 1223334333333443332 2322 1
Q ss_pred CCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCC
Q 043137 217 GGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYP 296 (445)
Q Consensus 217 g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~ 296 (445)
.+.+.+.+.++.+|+++ | +++.|++|+| ++||.+++++++ +.+++++
T Consensus 191 ----~~~~~~~e~v~avr~a~---g--~~~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~ 237 (392)
T 1tzz_A 191 ----APIEEDRMRIEAVLEEI---G--KDAQLAVDAN-----------------------GRFNLETGIAYA-KMLRDYP 237 (392)
T ss_dssp ----SCHHHHHHHHHHHHHHH---T--TTCEEEEECT-----------------------TCCCHHHHHHHH-HHHTTSC
T ss_pred ----CCHHHHHHHHHHHHHhc---C--CCCeEEEECC-----------------------CCCCHHHHHHHH-HHHHHcC
Confidence 12233455666555554 5 5899999993 578889999985 5689999
Q ss_pred eeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcC----CCCEEEeccCCcccHHHHHHHHHHHHH
Q 043137 297 IVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEK----TCNALLLKVNQIGSVTESIEAVRMSKQ 372 (445)
Q Consensus 297 i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~----a~d~v~ik~~~~GGit~a~~ia~~A~~ 372 (445)
+.|||||++++|++++++|+++++ +||++||+. +++++++++++.+ ++|++++|++++||||++++++++|++
T Consensus 238 i~~iEqP~~~~d~~~~~~l~~~~~--iPIa~dE~~-~~~~~~~~~i~~~~~~~~~d~v~ik~~~~GGit~~~~i~~~A~~ 314 (392)
T 1tzz_A 238 LFWYEEVGDPLDYALQAALAEFYP--GPMATGENL-FSHQDARNLLRYGGMRPDRDWLQFDCALSYGLCEYQRTLEVLKT 314 (392)
T ss_dssp CSEEECCSCTTCHHHHHHHTTTCC--SCEEECTTC-CSHHHHHHHHHHSCCCTTTCEECCCTTTTTCHHHHHHHHHHHHH
T ss_pred CCeecCCCChhhHHHHHHHHhhCC--CCEEECCCC-CCHHHHHHHHHcCCCccCCcEEEECccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999988 999999985 7799999999999 999999999999999999999999999
Q ss_pred cCCc---EEecCCCCCChhhHHHHHHhhhcC
Q 043137 373 AGWG---VMASHRSGETEDTFIADLSVGLAT 400 (445)
Q Consensus 373 ~g~~---~~~~~~~~et~~~~~~~la~a~~~ 400 (445)
+|++ +++++ .+. ..+|++.++..
T Consensus 315 ~gi~~~~~~~~~----~~~-~~~hl~aa~~~ 340 (392)
T 1tzz_A 315 HGWSPSRCIPHG----GHQ-MSLNIAAGLGL 340 (392)
T ss_dssp TTCCGGGBCCSC----CBH-HHHHHHHHHTC
T ss_pred CCCCCceEeecH----HHH-HHHHHHHhCCC
Confidence 9999 97653 112 24788877653
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-43 Score=362.56 Aligned_cols=303 Identities=18% Similarity=0.203 Sum_probs=215.7
Q ss_pred eEEEEEEEEEEecCC--------------CCceEEEEEEeCC--CceEEEeccCCCccccccceeeccCCCCCCCccHHH
Q 043137 3 ITITAVKARQIFDSR--------------GNPTVEVDVTTSD--GHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSK 66 (445)
Q Consensus 3 mkI~~v~~~~v~~~~--------------g~~~v~V~v~td~--G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~ 66 (445)
|||++|+++.+..+. ...+++|+|+||+ |++|||++++. | + +.+.
T Consensus 2 mkI~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~~~V~v~td~~~G~~G~Ge~~~~---g-------------~---~~~~ 62 (441)
T 2hxt_A 2 RTIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTI---G-------------R---GNDV 62 (441)
T ss_dssp CBEEEEEEEEEECCGGGTTTTCCSSCSSCCCEEEEEEEEESSCTTCEEEEEEEEC---S-------------T---THHH
T ss_pred CcEEEEEEEEEEecCCCCcCcccccccCCCcceEEEEEEECCCCCCEEEEeecCC---C-------------C---CcHH
Confidence 799999999885321 1246899999998 99999976431 1 1 1233
Q ss_pred HHHHHHHhHhhhhcCCCCCCHHH----HHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhcc
Q 043137 67 AVSNVNAIIGPALAGKDPTEQTA----IDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAE 142 (445)
Q Consensus 67 a~~~i~~~l~p~LiG~d~~~~e~----i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~ 142 (445)
+...++ .++|.|+|+||.+++. +|+.|. ...+.. |..+..++..+|++|||+||||+.||.+|+|||+|||
T Consensus 63 v~~~i~-~l~~~liG~d~~~~~~~~~~~~~~l~-~~~~~~--~~~~~~g~~~~A~said~AlwDl~gk~~g~Pl~~lLG- 137 (441)
T 2hxt_A 63 QTAAVA-ALAEHVVGLSVDKVIADLGAFARRLT-NDSQLR--WLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIA- 137 (441)
T ss_dssp HHHHHH-TTHHHHTTCBHHHHHHCHHHHHHHHH-TCHHHH--HTCSSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHH-
T ss_pred HHHHHH-HHHHHHcCCChHHHHhhHHHHHHHHH-hccccc--cccccccHHHHHHHHHHHHHHHHHHHHcCCcHHHHhc-
Confidence 344454 7999999999999875 566665 211100 0000122335899999999999999999999999999
Q ss_pred ccCCCccee---------------------------------------eeeeEEeecCcccCCCCcccceeeeccCChhc
Q 043137 143 LSGNKNLVL---------------------------------------PVPAFNVINGGSHAGNKLAMQEFMILPVGASC 183 (445)
Q Consensus 143 ~~G~~~~~v---------------------------------------p~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~ 183 (445)
|..+..+ ++|+|++..|+.. .+. ++.
T Consensus 138 --G~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~vp~y~~~~g~~~----~~~---------e~~ 202 (441)
T 2hxt_A 138 --ELTPEQLVDTIDFRYLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLG----YSD---------EKL 202 (441)
T ss_dssp --TSCHHHHHHHCCCTTCTTTCCHHHHHHHHHHHGGGHHHHHHHHHHHCEEEEEEEEECTT----SCH---------HHH
T ss_pred --CCCcccccccccccccccccchhhhhhhhhcccccchhhhhhcccCCcceeEecccccC----CCH---------HHH
Confidence 8643221 4556665322210 111 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCce
Q 043137 184 FKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKT 263 (445)
Q Consensus 184 ~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~ 263 (445)
.+++.+...++|+.+| .|.| + +.+.+.+.++++|+++ | +++.|++|+|
T Consensus 203 ~~~a~~~~~~Gf~~vK----ik~g----------~---~~~~d~e~v~avR~a~---G--~d~~l~vDan---------- 250 (441)
T 2hxt_A 203 VRLAKEAVADGFRTIK----LKVG----------A---NVQDDIRRCRLARAAI---G--PDIAMAVDAN---------- 250 (441)
T ss_dssp HHHHHHHHHTTCSEEE----EECC----------S---CHHHHHHHHHHHHHHH---C--SSSEEEEECT----------
T ss_pred HHHHHHHHHcCCCEEE----EccC----------C---CHHHHHHHHHHHHHhc---C--CCCeEEEECC----------
Confidence 4455554444555443 3332 1 1233455666665554 5 5899999993
Q ss_pred eeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHh-CCCceEEeCcccccCHHHHHHHH
Q 043137 264 YDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEV-GEKVQIVGDDLLVTNPKRVEKAI 342 (445)
Q Consensus 264 y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~-~~~vpI~gde~~~~~~~~~~~~i 342 (445)
++||.+++++++ +.++++++.|||||++++|++++++|++++ + +||++||+ +++++++++++
T Consensus 251 -------------~~~~~~~a~~~~-~~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~~--iPIa~dE~-~~~~~~~~~~i 313 (441)
T 2hxt_A 251 -------------QRWDVGPAIDWM-RQLAEFDIAWIEEPTSPDDVLGHAAIRQGITP--VPVSTGEH-TQNRVVFKQLL 313 (441)
T ss_dssp -------------TCCCHHHHHHHH-HTTGGGCCSCEECCSCTTCHHHHHHHHHHHTT--SCEEECTT-CCSHHHHHHHH
T ss_pred -------------CCCCHHHHHHHH-HHHHhcCCCeeeCCCCHHHHHHHHHHHhhCCC--CCEEEeCC-cCCHHHHHHHH
Confidence 578899999985 568999999999999999999999999998 6 99999998 57899999999
Q ss_pred hcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH-HHHHH
Q 043137 343 KEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF-IADLS 395 (445)
Q Consensus 343 ~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~-~~~la 395 (445)
+.+++|+++||++++||||++++++++|+++|+++ ++|.+ ....+. ..|++
T Consensus 314 ~~~~~d~v~ik~~~~GGite~~~ia~~A~~~g~~~-~~h~~-~~~~~~~~~~~a 365 (441)
T 2hxt_A 314 QAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRV-FPHAG-GVGLCELVQHLA 365 (441)
T ss_dssp HHTCCSEECCCTTTSSHHHHHHHHHHHHHHTTCEE-CCCCC-STTHHHHHHHHH
T ss_pred HcCCCCEEEeCcceeCCHHHHHHHHHHHHHcCCeE-EEecC-hHHHHHHHHHHH
Confidence 99999999999999999999999999999999997 56743 333332 33554
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=351.20 Aligned_cols=275 Identities=20% Similarity=0.277 Sum_probs=203.7
Q ss_pred CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCC-CCCCHHHHHHHHHHH
Q 043137 19 NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGK-DPTEQTAIDNYMVQQ 97 (445)
Q Consensus 19 ~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~-d~~~~e~i~~~l~~~ 97 (445)
+..++|+| ||+|++|||++...+ |++++...+.+.+++ +. |+|+ ||.+++++|+.|. .
T Consensus 26 ~~~~~V~v-td~G~~G~GE~~~~~----------------~~ge~~~~~~~~l~~-~~--l~g~~d~~~~e~~~~~l~-~ 84 (338)
T 3ijl_A 26 TPDVQVEI-EYEGVTGYGEASMPP----------------YLGETVESVMNFLKK-VN--LEQFSDPFQLEDILSYVD-S 84 (338)
T ss_dssp ECEEEEEE-EETTEEEEEEEECCG----------------GGSCCHHHHHHHHTT-CC--CTTCCCTTCHHHHHHHHH-H
T ss_pred eeEEEEEE-EeCCcEEEEeeeCCC----------------CCCCCHHHHHHHHHH-HH--hcCCCCccCHHHHHHHHH-H
Confidence 36799999 999999999654321 334455665555543 22 8999 9999999999998 3
Q ss_pred hccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeec
Q 043137 98 LDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMIL 177 (445)
Q Consensus 98 l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~ 177 (445)
.. ....+|++||||||||+.||.+|+|||+||| |. ++++|.+.+++ |. ..
T Consensus 85 ~~-----------~~~~~A~said~ALwDl~gk~~g~Pl~~LlG---g~-~~~v~~~~~~~---~~------~~------ 134 (338)
T 3ijl_A 85 LS-----------PKDTAAKAAVDIALHDLVGKLLGAPWYKIWG---LN-KEKTPSTTFTI---GI------DT------ 134 (338)
T ss_dssp TC-----------SCCHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CC-GGGCCBBCCBC---CC------CC------
T ss_pred hc-----------cCCHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-CCCcceEEEEE---eC------CC------
Confidence 21 1236899999999999999999999999999 87 56777644432 11 00
Q ss_pred cCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEecccccc
Q 043137 178 PVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEF 257 (445)
Q Consensus 178 p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~ 257 (445)
+++..+++.+.. ++|+++ |.|+|. +.+.++++++|+++ ++.|++|+
T Consensus 135 --~e~~~~~a~~~~-~g~~~~----K~Kvg~---------------~~d~~~v~avR~~~-------~~~l~vDa----- 180 (338)
T 3ijl_A 135 --PDVVRAKTKECA-GLFNIL----KVKLGR---------------DNDKEMIETIRSVT-------DLPIAVDA----- 180 (338)
T ss_dssp --HHHHHHHHHHHH-TTCSSE----EEECSS---------------SCHHHHHHHHHTTC-------CCCEEEEC-----
T ss_pred --HHHHHHHHHHHH-hcccEE----EEecCc---------------HHHHHHHHHHHhhc-------CCcEEEEC-----
Confidence 111222332221 134333 244331 23456665555442 36899999
Q ss_pred ccCCceeeecccCCCCCCCCccC-HHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHH
Q 043137 258 YGSDKTYDLNFKEENNDGSQKIS-GDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPK 336 (445)
Q Consensus 258 ~~~~~~y~~~~~~~~~~~~~~~t-~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~ 336 (445)
|+.|| .++++++ .+.++++++.|||||++++|++++++|+++++ +||++||+. .+++
T Consensus 181 ------------------N~~~t~~~~A~~~-~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~--ipIa~dE~~-~~~~ 238 (338)
T 3ijl_A 181 ------------------NQGWKDRQYALDM-IHWLKEKGIVMIEQPMPKEQLDDIAWVTQQSP--LPVFADESL-QRLG 238 (338)
T ss_dssp ------------------TTCCCCHHHHHHH-HHHHHHTTEEEEECCSCTTCHHHHHHHHHTCS--SCEEESTTC-CSGG
T ss_pred ------------------cCCCCCHHHHHHH-HHHHhhCCCCEEECCCCCCcHHHHHHHHhcCC--CCEEECCCC-CCHH
Confidence 46784 8999988 45689999999999999999999999999998 999999986 5588
Q ss_pred HHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCcc
Q 043137 337 RVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQI 403 (445)
Q Consensus 337 ~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~ 403 (445)
++++++ +++|++|||++++||||++++++++|+++|+++++++ +.|+..+.++.++++...++.
T Consensus 239 ~~~~~~--~a~d~i~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~-~~es~i~~aa~~~la~~~~~~ 302 (338)
T 3ijl_A 239 DVAALK--GAFTGINIKLMKCTGMREAWKMVTLAHALGMRVMVGC-MTETSCAISAASQFSPAVDFA 302 (338)
T ss_dssp GTGGGB--TTBSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECC-CSCCHHHHHHHHTTGGGCSEE
T ss_pred HHHHHH--hhCCEEEecccccCCHHHHHHHHHHHHHcCCEEEecC-CcccHHHHHHHHHHhccCCcc
Confidence 998885 7999999999999999999999999999999998766 578887766666655545554
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-42 Score=348.58 Aligned_cols=295 Identities=16% Similarity=0.141 Sum_probs=210.1
Q ss_pred CceEEEEEEEEEEec--------C--CC-----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHH
Q 043137 1 MAITITAVKARQIFD--------S--RG-----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVS 65 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~--------~--~g-----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~ 65 (445)
|.|||++|+++.+.. + .+ +++++|+|+|| |++|||+++ +
T Consensus 10 ~~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~V~v~td-G~~G~GE~~-g------------------------ 63 (392)
T 3p3b_A 10 SDWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITID-GQTGYGSSI-H------------------------ 63 (392)
T ss_dssp TTCBEEEEEEEEEEEEEEEEECBCSSSCCCEEEEEEEEEEEEET-TEEEEEECC-S------------------------
T ss_pred CCCeEEEEEEEEEeccCCCcccccccccccCCCCcEEEEEEEEC-CCEEEEecc-c------------------------
Confidence 459999999987732 1 11 45789999999 999998764 1
Q ss_pred HHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccC
Q 043137 66 KAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSG 145 (445)
Q Consensus 66 ~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G 145 (445)
.|+ .++|.|+|+||.+++.+| . ++..+|++|||+||||+.||.+|+|||+||| |
T Consensus 64 ----~i~-~l~p~l~G~d~~~~~~~~---~---------------~~~~~a~~aid~AlwDl~gk~~g~Pl~~llG---g 117 (392)
T 3p3b_A 64 ----MTP-EWAEDVIGRRLLDLFDDR---G---------------RLREAYRLQLEYPVLDWLGQRQGKPVYDLVS---G 117 (392)
T ss_dssp ----CCH-HHHHTTTTCBGGGGBCTT---S---------------CBCGGGHHHHHHHHHHHHHHHHTCBHHHHHC----
T ss_pred ----HHH-HHHHHhcCCCHHHHHHHH---h---------------HHHHHHHHHHHHHHHHHHHHHcCCcHHHHhc---C
Confidence 134 588999999998877654 1 1235799999999999999999999999999 8
Q ss_pred ----CC-cceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCC
Q 043137 146 ----NK-NLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFA 220 (445)
Q Consensus 146 ----~~-~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~ 220 (445)
.. ++++|++......|+.+..+.+++++ ...+++.+...++|+.+| .|. +..++|.
T Consensus 118 ~~~~~~~~~~vp~~~s~~~~~~~~~~~~~~~~e--------~~~~~a~~~~~~Gf~~vK----ik~-------g~~~~~~ 178 (392)
T 3p3b_A 118 AHLETGASLVVPCYDTSLYFDDLHLADERAAVA--------LMQEEAMQGYAKGQRHFK----IKV-------GRGGRHM 178 (392)
T ss_dssp -------CEEEEEEEEEECBTTTTCCSHHHHHH--------HHHHHHHHHHHTTCCCEE----EEC-------CHHHHTS
T ss_pred ccccccccCCcceeEeecccCCCCcccccchHH--------HHHHHHHHHHHhCCCEEE----ECc-------CcCcccC
Confidence 54 67787754211111110000000111 123344444334444433 232 2222222
Q ss_pred CCccChHHHHHHHHHHHHH-hCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeee
Q 043137 221 PNIQENKEGLELLNTAIAK-AGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVS 299 (445)
Q Consensus 221 ~~~~~~~~~l~~l~~av~~-~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~ 299 (445)
++.......++.++ ++|+ +| +++.|++|+| ++||.+++++++ +.++++++.|
T Consensus 179 ~~~~~~~~~~e~v~-avR~~~g--~d~~l~vDan-----------------------~~~~~~~ai~~~-~~l~~~~i~~ 231 (392)
T 3p3b_A 179 PLWEGTKRDIAIVR-GISEVAG--PAGKIMIDAN-----------------------NAYNLNLTKEVL-AALSDVNLYW 231 (392)
T ss_dssp CHHHHHHHHHHHHH-HHHHHHC--TTCCEEEECT-----------------------TCCCHHHHHHHH-HHTTTSCEEE
T ss_pred CccccHHHHHHHHH-HHHHHhC--CCCeEEEECC-----------------------CCCCHHHHHHHH-HHHHhcCCCE
Confidence 21112233444443 3333 56 5899999993 578899999985 5589999999
Q ss_pred EECCCCcCCHHHHHHHHHH-----hCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcC
Q 043137 300 IEDPFDQDDWEHYAKLTSE-----VGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAG 374 (445)
Q Consensus 300 iEdP~~~~D~~~~~~L~~~-----~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g 374 (445)
||||++ +|++++++|+++ ++ +||++|| . +++++++++++.+++|++++|++++ |+|++++++++|+++|
T Consensus 232 iE~P~~-~d~~~~~~l~~~l~~~g~~--iPIa~dE-~-~~~~~~~~~i~~~~~d~v~ik~~~~-Git~~~~i~~~A~~~g 305 (392)
T 3p3b_A 232 LEEAFH-EDEALYEDLKEWLGQRGQN--VLIADGE-G-LASPHLIEWATRGRVDVLQYDIIWP-GFTHWMELGEKLDAHG 305 (392)
T ss_dssp EECSSS-CCHHHHHHHHHHHHHHTCC--CEEEECC-S-SCCTTHHHHHHTTSCCEECCBTTTB-CHHHHHHHHHHHHHTT
T ss_pred EecCCc-ccHHHHHHHHHhhccCCCC--ccEEecC-C-CCHHHHHHHHHcCCCCEEEeCcccc-CHHHHHHHHHHHHHcC
Confidence 999999 999999999999 77 9999999 5 6689999999999999999999999 9999999999999999
Q ss_pred CcEEecCCCCCChhhHHHHHHhhhcCC
Q 043137 375 WGVMASHRSGETEDTFIADLSVGLATG 401 (445)
Q Consensus 375 ~~~~~~~~~~et~~~~~~~la~a~~~~ 401 (445)
+++++ | +.|+.++.+++++++...+
T Consensus 306 i~~~~-h-~~es~i~~~a~l~laa~~~ 330 (392)
T 3p3b_A 306 LRSAP-H-CYGNAYGIYASGHLSAAVR 330 (392)
T ss_dssp CEECC-B-CCSCTHHHHHHHHHGGGCT
T ss_pred CEEEe-c-CCCCHHHHHHHHHHHHhCC
Confidence 99866 6 6899888777777665444
|
| >3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-41 Score=340.12 Aligned_cols=293 Identities=16% Similarity=0.146 Sum_probs=203.2
Q ss_pred ceEEEEEEEEEEe--------cC--CC-----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHH
Q 043137 2 AITITAVKARQIF--------DS--RG-----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSK 66 (445)
Q Consensus 2 ~mkI~~v~~~~v~--------~~--~g-----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~ 66 (445)
.|||++|+++.+. .+ .| +..++|+|+|| |++|||++... .
T Consensus 11 ~mkI~~i~~~~v~~pl~~~f~~s~~~g~~~~~~~~~~V~i~td-G~~G~GE~~~~----------------------~-- 65 (392)
T 3v5c_A 11 DWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITID-GQTGYGSSIHM----------------------T-- 65 (392)
T ss_dssp TCBEEEEEEEEEEEEEEEEECBCSSSCCCEEEEEEEEEEEEET-TEEEEEECCSC----------------------C--
T ss_pred CcEEEEEEEEEEeeecCcccccccccCccCCCceeEEEEEEEc-CCEEEEeecCc----------------------H--
Confidence 3899999998873 11 33 24589999999 99999976531 0
Q ss_pred HHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCC
Q 043137 67 AVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGN 146 (445)
Q Consensus 67 a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~ 146 (445)
+.++|.|+|+||.++. .. .+.+..+|++|||+||||+.||.+|+|||+||| |+
T Consensus 66 ------~~l~~~liG~d~~~~~--------~~----------~~~~~~~A~aaiD~ALwDl~gK~~g~Pv~~LLG---G~ 118 (392)
T 3v5c_A 66 ------PEWAEDVIGRRLLDLF--------DD----------RGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVS---GA 118 (392)
T ss_dssp ------HHHHHTTTTCBGGGGB--------CT----------TSCBCGGGHHHHHHHHHHHHHHHHTCBHHHHHS---CC
T ss_pred ------HHHHHHhCCCCHHHHH--------hh----------ccchHHHHHHHHHHHHHHHHHHHhCCcHHHHcC---CC
Confidence 2478999999996531 11 123446899999999999999999999999999 98
Q ss_pred Ccce---eeeeeEEeecCcccCCCCcccceeeecc-CChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCC-
Q 043137 147 KNLV---LPVPAFNVINGGSHAGNKLAMQEFMILP-VGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAP- 221 (445)
Q Consensus 147 ~~~~---vp~~~~~~~~gg~~~~~~~~~~e~~~~p-~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~- 221 (445)
.+++ +++|+|++.. +... ....+ -| ..++..+++.+...++|+++| .|+| ..+.+.+
T Consensus 119 ~r~~~~~v~v~~y~~~~-~~~~---~~~~~---~~~~~e~~~~~a~~~~~~Gf~~~K----lKvg-------~~~~~~~~ 180 (392)
T 3v5c_A 119 HLETGASLVVPCYDTSL-YFDD---LHLAD---ERAAVALMQEEAMQGYAKGQRHFK----IKVG-------RGGRHMPL 180 (392)
T ss_dssp CSCCCCCEEEEEEEEEE-CBTT---TTCCC---HHHHHHHHHHHHHHHHHTTCCCEE----EECC-------TTTTTSCH
T ss_pred CCcccccceEEEEEeec-cccc---ccccc---cccCHHHHHHHHHHHHHCCCCEEE----ECCC-------CCCccccc
Confidence 7766 2244454311 1100 00000 00 001223344444444555543 3433 2222211
Q ss_pred --CccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeee
Q 043137 222 --NIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVS 299 (445)
Q Consensus 222 --~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~ 299 (445)
+++.+.++++++|+++ | +++.|++|+ |+.||.++++++ .+.+++|++.|
T Consensus 181 ~~~~~~d~~~v~avR~a~---g--~~~~l~vDa-----------------------N~~w~~~~A~~~-~~~L~~~~l~~ 231 (392)
T 3v5c_A 181 WEGTKRDIAIVRGISEVA---G--PAGKIMIDA-----------------------NNAYNLNLTKEV-LAALSDVNLYW 231 (392)
T ss_dssp HHHHHHHHHHHHHHHHHH---C--TTCCEEEEC-----------------------TTCCCHHHHHHH-HHHTTTSCCCE
T ss_pred cccHHHHHHHHHHHHHHc---C--CCCcEEeeC-----------------------CCCcCHHHHHHH-HHhcccCCCeE
Confidence 1223344554444443 6 689999999 467899999988 45689999999
Q ss_pred EECCCCcCCHHHHHHHHHHh---CCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCc
Q 043137 300 IEDPFDQDDWEHYAKLTSEV---GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWG 376 (445)
Q Consensus 300 iEdP~~~~D~~~~~~L~~~~---~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~ 376 (445)
||||++ +|++++++|++++ ..++||++||+. . .++++++++.+++|++|+|+++ ||||++++++++|+++|++
T Consensus 232 iEeP~~-~d~~~~~~l~~~~~~~~~~ipIa~gE~~-~-~~~~~~li~~~a~dii~~d~~~-GGitea~kia~~A~~~gv~ 307 (392)
T 3v5c_A 232 LEAAFH-EDEALYEDLKEWLGQRGQNVLIADGEGL-A-SPHLIEWATRGRVDVLQYDIIW-PGFTHWMELGEKLDAHGLR 307 (392)
T ss_dssp EECSSS-CCHHHHHHHHHHHHHHTCCCEEEECCSS-C-CTTHHHHHHTTSCCEECCBTTT-BCHHHHHHHHHHHHHTTCE
T ss_pred EeCCCC-cCHHHHHHHHHhhccCCCCCcEECCCcc-c-HHHHHHHHHcCCCcEEEeCCCC-CCHHHHHHHHHHHHHcCCe
Confidence 999998 6899999999873 123999999985 4 6899999999999999999999 9999999999999999999
Q ss_pred EEecCCCCCChhhH--HHHHHhhhc
Q 043137 377 VMASHRSGETEDTF--IADLSVGLA 399 (445)
Q Consensus 377 ~~~~~~~~et~~~~--~~~la~a~~ 399 (445)
+++ |++ ++.++. .+||+++++
T Consensus 308 ~~~-h~~-~s~i~~aa~~hlaaa~p 330 (392)
T 3v5c_A 308 SAP-HCY-GNAYGIYASGHLSAAVR 330 (392)
T ss_dssp ECC-BCC-SCTHHHHHHHHHGGGCT
T ss_pred EEe-cCC-CcHHHHHHHHHHHHhCC
Confidence 865 533 566554 456655543
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=344.62 Aligned_cols=292 Identities=15% Similarity=0.163 Sum_probs=209.3
Q ss_pred CceEEEEEEEEEEe--------cCCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHH
Q 043137 1 MAITITAVKARQIF--------DSRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAV 68 (445)
Q Consensus 1 ~~mkI~~v~~~~v~--------~~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~ 68 (445)
|.|||++|+++.+. .+.+ +++++|+|+||+|++|||+++. +|. +.|. ...+.
T Consensus 1 m~mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~~---~g~----------~~~~---~~~~~ 64 (389)
T 2oz8_A 1 MSLSLSHFRITRFQFARDRVIGDSQVRADDVNVAALELVSESGEVGLGFIQT---LFN----------PLPD---QQEIE 64 (389)
T ss_dssp --CCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEEE---SSS----------CCCC---HHHHH
T ss_pred CCCEEEEEEEEEEEeccCCceecccceecccceEEEEEEECCCCEEEEEecc---CCC----------cccc---HHHHH
Confidence 88999999998773 2333 3568999999999999997643 111 1122 23556
Q ss_pred HHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCccccccccc----chhhHHHHHHHHHHHHHHhcCCchhhhhcccc
Q 043137 69 SNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKL----GANAILAVSLAVCKAGAHVKKIPLYKHIAELS 144 (445)
Q Consensus 69 ~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~----~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~ 144 (445)
..+++.++|.|+|+|+.++ +. .+++. ..+. ..+|++|||+||||+.||.+|+|||+|||
T Consensus 65 ~~i~~~l~p~l~G~d~~~~------~~-~~~~~-------~~~~~~~l~~~a~~aid~AlwDl~~k~~g~Pl~~lLG--- 127 (389)
T 2oz8_A 65 SVFEHEVWPSLKGNRAIAL------VH-RVNRP-------RGGNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVLLG--- 127 (389)
T ss_dssp HHHHHHTHHHHTTSCHHHH------TT-CCCCC-------C------CCSCCHHHHHHHHHHHHHHHHTSBHHHHTT---
T ss_pred HHHHHHHHHHHcCCCHHHH------HH-HHhcc-------CCCccchhhHHHHHHHHHHHHHHHHHHhCCcHHHHcC---
Confidence 6678889999999998665 22 22110 1122 56899999999999999999999999999
Q ss_pred CCCcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCcc
Q 043137 145 GNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQ 224 (445)
Q Consensus 145 G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~ 224 (445)
|. ++++|+ |++ +|.+. .+. ++..+++.+...++|+.+| .|.|. .+++
T Consensus 128 g~-~~~vp~--y~~--~~~~~---~~~---------~~~~~~a~~~~~~Gf~~vK----ik~g~------------~~~~ 174 (389)
T 2oz8_A 128 SR-RNRVKA--YAS--GLDFH---LDD---------DAFVSLFSHAASIGYSAFK----IKVGH------------RDFD 174 (389)
T ss_dssp CS-CSEEEE--EEE--CCBTT---CCH---------HHHHHHHHHHHHTTCCEEE----EECCC------------SSHH
T ss_pred CC-CCceEE--EEe--CCCcC---CCH---------HHHHHHHHHHHHhCCCEEE----EccCC------------CCHH
Confidence 86 456665 544 23210 111 2223444444444554443 33331 1222
Q ss_pred ChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhcc--CCeeeEEC
Q 043137 225 ENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISD--YPIVSIED 302 (445)
Q Consensus 225 ~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~--~~i~~iEd 302 (445)
.+.+.++.+|++ +| +++.|++|+| ++||.+++++++ +.+++ +++.||||
T Consensus 175 ~~~e~v~avR~a---~G--~~~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~g~~i~~iEq 225 (389)
T 2oz8_A 175 RDLRRLELLKTC---VP--AGSKVMIDPN-----------------------EAWTSKEALTKL-VAIREAGHDLLWVED 225 (389)
T ss_dssp HHHHHHHHHHTT---SC--TTCEEEEECT-----------------------TCBCHHHHHHHH-HHHHHTTCCCSEEES
T ss_pred HHHHHHHHHHHh---hC--CCCeEEEECC-----------------------CCCCHHHHHHHH-HHHHhcCCCceEEeC
Confidence 233444433333 45 5899999993 578889999985 56888 99999999
Q ss_pred CCCcCCHHHHHHHHHHh-CCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecC
Q 043137 303 PFDQDDWEHYAKLTSEV-GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASH 381 (445)
Q Consensus 303 P~~~~D~~~~~~L~~~~-~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~ 381 (445)
|++++|++++++|++++ + +||++||+. ++++++++++.+++|++++| ||||++++++++|+++|++++++|
T Consensus 226 P~~~~~~~~~~~l~~~~~~--iPIa~dE~~--~~~~~~~~i~~~~~d~v~ik----GGit~a~~i~~~A~~~gi~~~~~~ 297 (389)
T 2oz8_A 226 PILRHDHDGLRTLRHAVTW--TQINSGEYL--DLQGKRLLLEAHAADILNVH----GQVTDVMRIGWLAAELGIPISIGN 297 (389)
T ss_dssp CBCTTCHHHHHHHHHHCCS--SEEEECTTC--CHHHHHHHHHTTCCSEEEEC----SCHHHHHHHHHHHHHHTCCEEECC
T ss_pred CCCCcCHHHHHHHHhhCCC--CCEEeCCCC--CHHHHHHHHHcCCCCEEEEC----cCHHHHHHHHHHHHHcCCeEeecc
Confidence 99999999999999999 7 999999985 69999999999999999999 999999999999999999998874
Q ss_pred CCCCChhhHHHHHHhhhc
Q 043137 382 RSGETEDTFIADLSVGLA 399 (445)
Q Consensus 382 ~~~et~~~~~~~la~a~~ 399 (445)
++.| +.+|++.++.
T Consensus 298 ~~~e----a~lhlaaa~~ 311 (389)
T 2oz8_A 298 TFLE----AGVHMAVALP 311 (389)
T ss_dssp CGGG----TTHHHHHHST
T ss_pred cHHH----HHHHHHhcCC
Confidence 3333 5678877764
|
| >2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-41 Score=334.11 Aligned_cols=275 Identities=11% Similarity=0.068 Sum_probs=205.4
Q ss_pred ceEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHH
Q 043137 2 AITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVS 69 (445)
Q Consensus 2 ~mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~ 69 (445)
.|||++|+++.+.. +.+ +..++|+|+||+|++|||++...+ .++|++++..++..
T Consensus 1 ~MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~-------------~~~~~~e~~~~~~~ 67 (342)
T 2okt_A 1 SLKLTALHFYKYSEPFKSQIVTPKVTLTHRDCLFIELIDDKGNAYFGECNAFQ-------------TDWYDHETIASVKH 67 (342)
T ss_dssp CBCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTCCEEEEECCCBS-------------STTSCSCBHHHHHH
T ss_pred CcEEEEEEEEEEeecccCCeecccEEEEeeeEEEEEEEECCCCEEEEEecCCC-------------CCcCCCCCHHHHHH
Confidence 38999999987732 222 246899999999999999764321 13466777777777
Q ss_pred HHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcc
Q 043137 70 NVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNL 149 (445)
Q Consensus 70 ~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~ 149 (445)
.+++.+ |.|+|+||.+++.+|+.|. ... + ..+|++|||+||||+.||.+|+
T Consensus 68 ~l~~~~-~~l~G~d~~~~~~l~~~l~-~~~----------g--~~~a~said~ALwDl~gk~~g~--------------- 118 (342)
T 2okt_A 68 VIEQWF-EDNRNKSFETYEAALKLVD-SLE----------N--TPAARATIVMALYQMFHVLPSF--------------- 118 (342)
T ss_dssp HHHHHH-HHHTTCCBCSHHHHHHTTG-GGT----------T--CHHHHHHHHHHHHHTTCCCCCE---------------
T ss_pred HHHHHH-HHHcCCCcCCHHHHHHHHH-Hhh----------c--ChHHHHHHHHHHHHHhhhhhCc---------------
Confidence 787766 9999999999999998887 331 1 2579999999999999998876
Q ss_pred eeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHH
Q 043137 150 VLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEG 229 (445)
Q Consensus 150 ~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~ 229 (445)
++|+ |.++.|. +. + .+++++ .++|+++| .|+| .+ +.++
T Consensus 119 ~v~~--~~~~~g~-------~~-e---------~~~~~~---~~G~~~~K----iKvg---------------~~-d~~~ 156 (342)
T 2okt_A 119 SVAY--GATASGL-------SN-K---------QLESLK---ATKPTRIK----LKWT---------------PQ-IMHQ 156 (342)
T ss_dssp EEEC--EEEESSC-------CH-H---------HHHHHH---HHCCSEEE----EECC---------------TT-HHHH
T ss_pred eEee--eEEEecC-------CH-H---------HHHHHH---HcCCcEEE----EEeC---------------HH-HHHH
Confidence 3555 4333111 00 1 012222 22344433 3322 23 4566
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCH
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDW 309 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~ 309 (445)
++++|+++ +++.|++|+ |+.||.+++ ++ .+.++++++.|||||++++|+
T Consensus 157 v~avr~~~------~~~~l~vDa-----------------------N~~~~~~~A-~~-~~~l~~~~i~~iEqP~~~~d~ 205 (342)
T 2okt_A 157 IRVLRELD------FHFQLVIDA-----------------------NESLDRQDF-TQ-LQLLAREQVLYIEEPFKDISM 205 (342)
T ss_dssp HHHHTTSS------SCCEEEEEC-----------------------TTCCCGGGH-HH-HHHHGGGCEEEEECCCSSGGG
T ss_pred HHHHHHhC------CCCeEEEEC-----------------------CCCCCHHHH-HH-HHHHhhCCCcEEECCCCCccH
Confidence 65554432 589999999 367888899 87 556899999999999999999
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+++++ ++++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|+++++++ +.|+.++
T Consensus 206 ~~~~~--~~~~--ipIa~dEs~-~~~~~~~~~i~~~a~d~i~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~-~~es~i~ 279 (342)
T 2okt_A 206 LDEVA--DGTI--PPIALDEKA-TSLLDIINLIELYNVKVVVLKPFRLGGIDKVQTAIDTLKSHGAKVVIGG-MYEYGLS 279 (342)
T ss_dssp GGGSC--TTSS--CCEEESTTC-CCHHHHHHHHHHSCCCEEEECHHHHTSGGGHHHHHHHHHHTTCEEEEBC-SSCCHHH
T ss_pred HHHHH--hcCC--CCEEecCCC-CCHHHHHHHHHhCCCCEEEEChhhcCCHHHHHHHHHHHHHCCCEEEEcC-CcccHHH
Confidence 99988 5566 999999985 6799999999999999999999999999999999999999999998876 4688776
Q ss_pred HHHHHHhh
Q 043137 390 FIADLSVG 397 (445)
Q Consensus 390 ~~~~la~a 397 (445)
..+.++++
T Consensus 280 ~aa~~hla 287 (342)
T 2okt_A 280 RYFTAMLA 287 (342)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544444
|
| >1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=320.09 Aligned_cols=282 Identities=16% Similarity=0.176 Sum_probs=200.7
Q ss_pred EEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHH
Q 043137 4 TITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNV 71 (445)
Q Consensus 4 kI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i 71 (445)
||++|+++.+.. +.+ +..++|+|+ |+|++|||++...+. | +++.......+
T Consensus 3 ~i~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~-d~G~~G~GE~~~~~~---------------~-g~~~~~~~~~i 65 (324)
T 1jpd_X 3 HMRTVKVFEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPR---------------Y-GESDASVMAQI 65 (324)
T ss_dssp SCCEEEEEEEEEEBSCC------CCSEEEEEEEEEE-ETTEEEEEEECCCGG---------------G-TCCHHHHHHHH
T ss_pred ceEEEEEEEEEecccccEEecCeeEEEeeEEEEEEE-eCCceEEEEeeCCCC---------------c-CCCHHHHHHHH
Confidence 466777766632 222 245899998 789999996543211 1 33344445555
Q ss_pred HHhHhhhhc-CCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 72 NAIIGPALA-GKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 72 ~~~l~p~Li-G~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
+ .+.|.|+ |+| ++.+++ +.. ..+|++|||+||||+.||..|+|||+||| |..+ +
T Consensus 66 ~-~~~~~l~~~~~---~~~~~~-----~~~------------~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~~~-~ 120 (324)
T 1jpd_X 66 M-SVVPQLEKGLT---REELQK-----ILP------------AGAARNALDCALWDLAARRQQQSLADLIG---ITLP-E 120 (324)
T ss_dssp H-TTHHHHHTTCC---HHHHHH-----HSC------------SSHHHHHHHHHHHHHHHHTTTCCHHHHHT---CCCC-S
T ss_pred H-HHHHHHhcCCC---HHHHHH-----hCc------------cHHHHHHHHHHHHHHHHHHhCCcHHHHhC---CCCC-C
Confidence 5 4778874 654 455432 211 14799999999999999999999999999 8653 3
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGL 230 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l 230 (445)
.|++.|++ +++ +. +..++++.+...++|+++| .|+|. +.+.+++
T Consensus 121 ~~~~~~~~-~~~-------~~---------e~~~~~a~~~~~~G~~~~K----iKvg~---------------~~d~~~v 164 (324)
T 1jpd_X 121 TVITAQTV-VIG-------TP---------DQMANSASTLWQAGAKLLK----VKLDN---------------HLISERM 164 (324)
T ss_dssp EEEBCEEE-CSC-------CH---------HHHHHHHHHHHHTTCSEEE----EECCS---------------SCHHHHH
T ss_pred CcceeEEe-eCC-------CH---------HHHHHHHHHHHHcCCCEEE----EEeCC---------------chHHHHH
Confidence 56666664 222 11 2234455555555665554 34331 2345666
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHH
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWE 310 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~ 310 (445)
+++|+++ +++.|++|+| +.||.++++++ .+.+++|++.|||||++++|++
T Consensus 165 ~avr~~~------~~~~l~vDaN-----------------------~~~~~~~a~~~-~~~l~~~~i~~iEqP~~~~d~~ 214 (324)
T 1jpd_X 165 VAIRTAV------PDATLIVDAN-----------------------ESWRAEGLAAR-CQLLADLGVAMLEQPLPAQDDA 214 (324)
T ss_dssp HHHHHHC------TTSEEEEECT-----------------------TCCCSTTHHHH-HHHHHHTTCCEEECCSCTTSCG
T ss_pred HHHHHhC------CCCEEEEECc-----------------------CCCCHHHHHHH-HHHHHhCCCCEEECCCCCCCHH
Confidence 6555543 5899999993 56788899987 4578999999999999999999
Q ss_pred HHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH
Q 043137 311 HYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF 390 (445)
Q Consensus 311 ~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~ 390 (445)
++++++ ++ +||++||+. +++++++++++. +|++|||++++||+|++++++++|+++|++++++| +.|+..+.
T Consensus 215 ~~~~l~--~~--ipIa~dE~~-~~~~~~~~~~~~--~~~i~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~-~~es~i~~ 286 (324)
T 1jpd_X 215 ALENFI--HP--LPICADESC-HTRSNLKALKGR--YEMVNIKLDKTGGLTEALALATEARAQGFSLMLGC-MLCTSRAI 286 (324)
T ss_dssp GGGSSC--CS--SCEEESTTC-SSGGGHHHHBTT--BSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECC-CSCCHHHH
T ss_pred HHHhcc--CC--CCEEEcCCC-CCHHHHHHHHhh--CCEEEEcchhhCcHHHHHHHHHHHHHcCCcEEEeC-cchHHHHH
Confidence 999885 45 999999985 678999999854 89999999999999999999999999999998877 56888776
Q ss_pred HHHHHhhhcCC
Q 043137 391 IADLSVGLATG 401 (445)
Q Consensus 391 ~~~la~a~~~~ 401 (445)
.+.++++....
T Consensus 287 aa~~~la~~~~ 297 (324)
T 1jpd_X 287 SAALPLVPQVS 297 (324)
T ss_dssp HHHGGGGGGCS
T ss_pred HHHHHHhhcCC
Confidence 66666554333
|
| >4gfi_A Mandelate racemase/muconate lactonizing enzyme FA protein; putative L-Ala-L/D-Glu epimerase; HET: GLU; 1.90A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=300.29 Aligned_cols=269 Identities=15% Similarity=0.172 Sum_probs=188.6
Q ss_pred ceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhc
Q 043137 20 PTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLD 99 (445)
Q Consensus 20 ~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~ 99 (445)
.+|+|+|+ |+|++|||++...+ +.+++.+++.+.++....+.+.|.+. +. +. ...
T Consensus 31 ~~v~V~i~-d~G~~G~GE~~p~~----------------~~get~e~~~~~l~~~~~~~~~~~~~---~~----~~-~~~ 85 (329)
T 4gfi_A 31 DVVTCTIR-DGSFTGIGECVPYP----------------RYGESIEGVTADIEAMADRVAAGLTR---QE----LQ-QVM 85 (329)
T ss_dssp EEEEEEEE-ETTEEEEEEECCCG----------------GGTCCHHHHHHHHHTTHHHHHHTCCH---HH----HH-HHS
T ss_pred EEEEEEEE-ECCEEEEEeccCCC----------------CCCcCHHHHHHHHHHHhhhhccccch---hh----HH-hhc
Confidence 56899994 89999999653322 22456777777777666666666543 22 22 211
Q ss_pred cCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeeccC
Q 043137 100 GTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPV 179 (445)
Q Consensus 100 ~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~ 179 (445)
+ ..+|++|||+||||+.||..|+|+|++|| |..++.+|++. +++.+ ..
T Consensus 86 ~------------~~~a~aaid~AlwDl~gk~~g~pl~~llg---G~~~~~v~~~~--~~~~~--------~~------- 133 (329)
T 4gfi_A 86 K------------PGAARNAVDCALWDLEAKMSGKRAAEQVL---GQPAQPLVTAY--TISLA--------DP------- 133 (329)
T ss_dssp C------------SSHHHHHHHHHHHHHHHHHHSCCHHHHHH---SSCCCCEECCE--EECCC--------CH-------
T ss_pred c------------cHHHHHHHHHHHHHHHhhhcCCChhHHhC---CCCCCceeeee--cccCC--------Ch-------
Confidence 1 13699999999999999999999999999 98877777643 32211 00
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEecccccccc
Q 043137 180 GASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYG 259 (445)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~ 259 (445)
+....++.+ ..|....|++. | ...+.+.++.+| ++| +++.|++|+
T Consensus 134 -~~~~~~~~~---------------~~~~~~~Kik~-g-----~~~d~~~v~~vr----~~g--~d~~l~vDa------- 178 (329)
T 4gfi_A 134 -DTMAAKTAE---------------NAGRPLLKIKT-G-----TADDEARLRAVR----AAA--PEARIIIDA------- 178 (329)
T ss_dssp -HHHHHHHHH---------------TTTSSEEEEEC-C-----SSCCHHHHHHHH----HHC--TTSEEEEEC-------
T ss_pred -HHHHHHHHh---------------hccccEEEecC-C-----cccHHHHHHHHH----Hhc--cCCeEEEEc-------
Confidence 111111111 11211122211 0 123466665554 446 689999999
Q ss_pred CCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHH
Q 043137 260 SDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVE 339 (445)
Q Consensus 260 ~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~ 339 (445)
|+.||.++++++ .+.++++++.|||||++++|.+++.+ .+.+ +||++||+. .+++++.
T Consensus 179 ----------------N~~w~~~~A~~~-~~~l~~~~i~~iEqP~~~~~~~~~~~--~~~~--ipia~dEs~-~~~~d~~ 236 (329)
T 4gfi_A 179 ----------------NEGWNDDNIEYY-LKLAAELKISLIEQPLPAGKDAMLAR--IEHP--VLICADESV-HSTEDLA 236 (329)
T ss_dssp ----------------TTCCCTTTHHHH-HHHHHHTTCCEEECCSCTTSCGGGGG--SCCS--SEEEESTTC-CTGGGSG
T ss_pred ----------------CCCCCHHHHHHH-HHhhhhcCceEEEecCCCccHHHHHH--hcCC--CCchhccCC-CCHHHHH
Confidence 367888899987 45689999999999999998776543 3344 999999985 5688887
Q ss_pred HHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCcccc
Q 043137 340 KAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKT 405 (445)
Q Consensus 340 ~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~ 405 (445)
+. .+++|++|||++++||||++++++++|+++|+++++++ +.|+.++.++.++++...+++.+
T Consensus 237 ~~--~~a~d~i~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~-~~es~i~~aa~~~la~~~~~~dl 299 (329)
T 4gfi_A 237 GL--RDRYDAINIKLDKTGGLTEALVMKAEAERLGFTIMVGC-MLGTSLGMAPAVLVAQGTAFADL 299 (329)
T ss_dssp GG--TTTCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECC-CSCCHHHHHHHHHHTTTCSEECC
T ss_pred HH--hhccCeEEecCceeCCHHHHHHHHHHHHHCCCEEEECC-cchhHHHHHHHHHHHhCCCeecc
Confidence 64 57899999999999999999999999999999998876 57888877666666655666544
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=298.90 Aligned_cols=258 Identities=13% Similarity=0.132 Sum_probs=182.6
Q ss_pred CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHh
Q 043137 19 NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQL 98 (445)
Q Consensus 19 ~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l 98 (445)
+..++|+|+||+|++|||++...+ .|+++++.+++..+ +.|.|.| ||.+++.+|+.
T Consensus 28 ~~~~lV~v~td~G~~G~GE~~~~~---------------~~~~e~~~~~~~~~-~~l~~~l---~~~~~~~~~~~----- 83 (332)
T 2ozt_A 28 RSGIYLRLEDEQGQVGYGEIAPLP---------------GWGSETLNADIALC-QQLPGHL---TPEIMATIPEA----- 83 (332)
T ss_dssp EEEEEEEEECTTSCEEEEEECCCT---------------TSSSCCHHHHHHHH-HHSCSEE---CHHHHTTSCTT-----
T ss_pred eeEEEEEEEECCCCEEEEEecCCC---------------CCCcccHHHHHHHH-HHhhccC---CHHHHHHHHHH-----
Confidence 456899999999999999654211 24556676766554 3566755 44333322211
Q ss_pred ccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeecc
Q 043137 99 DGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILP 178 (445)
Q Consensus 99 ~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p 178 (445)
+ ..+++|||+||| +.|| || |..+ + +.+.+. + +
T Consensus 84 -------------~-~~a~~aid~Al~-l~gk---------lg---g~~~-~-~~y~~~-~--~---------------- 115 (332)
T 2ozt_A 84 -------------L-PAAQFGFATAWQ-SVGR---------LP---YRVR-P-WPICAL-L--G---------------- 115 (332)
T ss_dssp -------------C-HHHHHHHHHHHH-HTTT---------CS---CCCC-C-CCBCEE-E--C----------------
T ss_pred -------------h-HHHHHHHHHHHH-Hhcc---------cC---CCCC-C-cceEEe-c--C----------------
Confidence 1 358899999999 8777 56 6544 3 443221 1 1
Q ss_pred CChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccc
Q 043137 179 VGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFY 258 (445)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~ 258 (445)
.++...+++.+...++|+.+| .|+|. .+.+.+.++++++|+++ | +++.|++|+
T Consensus 116 ~~e~~~~~a~~~~~~G~~~~K----iKvg~------------~~~~~d~~~v~avr~~~---g--~~~~L~vDa------ 168 (332)
T 2ozt_A 116 SGQAALEQWQQSWQRGQTTFK----WKVGV------------MSPEEEQAILKALLAAL---P--PGAKLRLDA------ 168 (332)
T ss_dssp TGGGHHHHHHHHHHTTCCEEE----EECSS------------SCHHHHHHHHHHHHHHS---C--TTCEEEEEC------
T ss_pred ChHHHHHHHHHHHHcCCcEEE----EEeCC------------CChHHHHHHHHHHHHHc---C--CCCEEEEcc------
Confidence 112223444444444555443 34331 11233345555554443 5 579999999
Q ss_pred cCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccC---CeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCH
Q 043137 259 GSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDY---PIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNP 335 (445)
Q Consensus 259 ~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~---~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~ 335 (445)
|+.||.+++++++ +.+++| ++.|||||++++|+++|++|+++++ +||++||+. .++
T Consensus 169 -----------------N~~~~~~~A~~~~-~~l~~~~~~~i~~iEqP~~~~d~~~~~~l~~~~~--ipIa~dEs~-~~~ 227 (332)
T 2ozt_A 169 -----------------NGSWDRATANRWF-AWLDRHGNGKIEYVEQPLPPDQWQALLSLAQTVT--TAIALDESV-VSA 227 (332)
T ss_dssp -----------------TTCCCHHHHHHHH-HHHHHHCCTTEEEEECCSCTTCHHHHHHHHHHCS--SCEEESTTC-CSH
T ss_pred -----------------cCCCCHHHHHHHH-HHHHhhccCCcceeECCCCCCCHHHHHHHHHhCC--CCEEeCCCC-CCH
Confidence 3678999999985 557889 9999999999999999999999998 999999985 679
Q ss_pred HHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHc--CCcEEecCCCCCChhh--HHHHHHhhhcC
Q 043137 336 KRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQA--GWGVMASHRSGETEDT--FIADLSVGLAT 400 (445)
Q Consensus 336 ~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~--g~~~~~~~~~~et~~~--~~~~la~a~~~ 400 (445)
++++++++.+++|+++||++++||++ +++++|+++ |++++++|+ .||.++ +.+||+.++..
T Consensus 228 ~~~~~~~~~~a~~~i~ik~~~~GGi~---~i~~~A~~~~~gi~~~~~~~-~es~i~~aa~~hlaa~~~~ 292 (332)
T 2ozt_A 228 AEVQRWVDRGWPGFFVIKTALFGDPD---SLSLLLRRGLEPQRLVFSSA-LEGAIARTAIFHLLETWQP 292 (332)
T ss_dssp HHHHHHHHTTCCSEEEECHHHHSCHH---HHHHHHHTTCCGGGEEEBCC-SCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCCCEEEEChhhhCCHH---HHHHHHHHhCCCCcEEEeCC-cchHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999998 778899999 999999885 588765 46677777653
|
| >1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-36 Score=295.22 Aligned_cols=266 Identities=17% Similarity=0.172 Sum_probs=192.3
Q ss_pred EEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHH
Q 043137 4 TITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNV 71 (445)
Q Consensus 4 kI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i 71 (445)
||++|+.+.+.. +.+ +..++|+|+|| |++|||++... +.|++++...+...+
T Consensus 2 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~i~td-G~~G~GE~~~~---------------~~~~~e~~~~~~~~l 65 (322)
T 1r6w_A 2 HMRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLREG-EREGWGEISPL---------------PGFSQETWEEAQSVL 65 (322)
T ss_dssp CCEEEEEEEEEEEBCTTCBC-CCBCCEEEEEEEEEEET-TEEEEEEECCC---------------TTTCSSCHHHHHHHH
T ss_pred cceEEEEEEEEEeccCCeEeccEEEEeeeEEEEEEEEC-CeEEEEEecCC---------------CCCCccCHHHHHHHH
Confidence 688888887742 222 34689999997 99999965431 125566677777778
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCccee
Q 043137 72 NAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVL 151 (445)
Q Consensus 72 ~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~v 151 (445)
++.+.|.|+|+ .+ +++ ..+|++|||+||||+.||..|+|+|+ .+
T Consensus 66 ~~~~~~~l~g~--~~-----------l~~------------~~~a~~aid~ALwDl~gk~~g~p~~~-----------~v 109 (322)
T 1r6w_A 66 LAWVNNWLAGD--CE-----------LPQ------------MPSVAFGVSCALAELTDTLPQAANYR-----------AA 109 (322)
T ss_dssp HHHHHHHTTSC--CC-----------CCS------------SHHHHHHHHHHHHHHTTCSCCCSCCC-----------CC
T ss_pred HHHHHHhhCCh--hh-----------ccc------------ChHHHHHHHHHHHHhcCCCCCCCccc-----------eE
Confidence 88899999998 21 111 14699999999999999999988762 24
Q ss_pred eeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHH
Q 043137 152 PVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLE 231 (445)
Q Consensus 152 p~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~ 231 (445)
|++. + +. ++.++++.+. ++|+++| .|+|. .+.+.+.++++
T Consensus 110 ~~~~------~-------~~---------~~~~~~a~~~--~G~~~~K----iKvG~------------~~~~~d~~~v~ 149 (322)
T 1r6w_A 110 PLCN------G-------DP---------DDLILKLADM--PGEKVAK----VRVGL------------YEAVRDGMVVN 149 (322)
T ss_dssp CEEC------S-------CH---------HHHHHHHHTC--CSSEEEE----EECSS------------SCHHHHHHHHH
T ss_pred EEeC------C-------CH---------HHHHHHHHHh--CCCceEE----EEeCC------------CCHHHHHHHHH
Confidence 4421 1 01 1112222221 2444433 34331 12233455555
Q ss_pred HHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccC---CeeeEECCCCcCC
Q 043137 232 LLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDY---PIVSIEDPFDQDD 308 (445)
Q Consensus 232 ~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~---~i~~iEdP~~~~D 308 (445)
++|+++ +++.|++|+ |+.||.++++++ .+.++++ ++.|||||++ +
T Consensus 150 avr~~~------~~~~l~vDa-----------------------N~~~~~~~A~~~-~~~l~~~~~~~i~~iEqP~~--~ 197 (322)
T 1r6w_A 150 LLLEAI------PDLHLRLDA-----------------------NRAWTPLKGQQF-AKYVNPDYRDRIAFLEEPCK--T 197 (322)
T ss_dssp HHHHHC------TTEEEEEEC-----------------------TTCBCHHHHHHH-HHTSCTTTGGGEEEEECCBS--S
T ss_pred HHHHhC------CCCeEEEeC-----------------------CCCCCHHHHHHH-HHHhhhhccCCeeEEECCCC--C
Confidence 554432 589999999 367899999988 5678998 9999999997 4
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~ 388 (445)
++++++|+++++ +||++||+..+ . ++ ++++.+++|++|||++++||+|++++++++|+++|++++++|+ .|+..
T Consensus 198 ~~~~~~l~~~~~--ipIa~dE~~~~-~-~~-~~~~~~a~d~i~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~~-~es~i 271 (322)
T 1r6w_A 198 RDDSRAFARETG--IAIAWDESLRE-P-DF-AFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSS-IESSL 271 (322)
T ss_dssp HHHHHHHHHHHC--CCEEESGGGGS-T-TC-CCCCCTTEEEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEBCS-SCCHH
T ss_pred hHHHHHHHHhCC--CCEEeCCCCCC-h-hH-hhhhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCcEEEECc-cccHH
Confidence 889999999998 99999998654 4 46 6778999999999999999999999999999999999988775 58875
Q ss_pred h--HHHHHHhhhc
Q 043137 389 T--FIADLSVGLA 399 (445)
Q Consensus 389 ~--~~~~la~a~~ 399 (445)
+ +.+||+.++.
T Consensus 272 g~aa~~hlaa~~~ 284 (322)
T 1r6w_A 272 GLTQLARIAAWLT 284 (322)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 4 5667776654
|
| >3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2, NYSGXRC, target 9462A, protein structure initiative; 1.87A {Bdellovibrio bacteriovorus HD100} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=276.39 Aligned_cols=252 Identities=15% Similarity=0.116 Sum_probs=173.9
Q ss_pred eEEEEEEEEEEe------cC---CCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHH
Q 043137 3 ITITAVKARQIF------DS---RGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNA 73 (445)
Q Consensus 3 mkI~~v~~~~v~------~~---~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~ 73 (445)
|||+ +....+- .+ ..+..++|+|+||+|++|||++...+ .|++++... .+.+
T Consensus 2 MkI~-~~~~~~pl~~p~~~s~~~~~~~~~~V~v~td~G~~G~GE~~~~~---------------~~~~e~~~~---~l~~ 62 (330)
T 3caw_A 2 IKIS-YSPYTLKPVQSLNAATAATAREGVLLKVEWNDGLYGFADLHPWP---------------ELGDLSLEE---QLSD 62 (330)
T ss_dssp -CEE-EEEEEECBC----------CEEEEEEEEECTTSCEEEEEECCCG---------------GGTCCCHHH---HHHH
T ss_pred cEEE-EEEEEeecCCCeEeeeEEEEeeEEEEEEEECCCCEEEEeecCCC---------------CcCcccHHH---HHHH
Confidence 7888 5444432 12 11356899999999999999654311 134444433 2333
Q ss_pred hHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeee
Q 043137 74 IIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPV 153 (445)
Q Consensus 74 ~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~ 153 (445)
.+ |. . ...+|++|||+||||+.||.+|+|||+ | | +++|+
T Consensus 63 ~l------------------l~-~--------------~~~~a~said~AlwDl~gk~~g~Pl~~--G---g---~~v~~ 101 (330)
T 3caw_A 63 LR------------------MG-R--------------MTTQIEQSIWLARRDALLRKEKKHVFD--G---G---EKIKN 101 (330)
T ss_dssp HH------------------HT-C--------------CCHHHHHHHHHHHHHHHHHHTTCBTTT--T---S---CCCCB
T ss_pred HH------------------hc-c--------------chHHHHHHHHHHHHHHHHHHcCCcccc--C---C---CceEE
Confidence 22 11 0 124799999999999999999999999 9 7 45776
Q ss_pred eeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHH
Q 043137 154 PAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELL 233 (445)
Q Consensus 154 ~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l 233 (445)
+. ++++..+. +. ++.. +...++|+++| .|+|. +. .+.++.+
T Consensus 102 ~~--~~~~~~~~----~~---------~~~~----~~~~~G~~~~K----iKvg~-------------~~---~~d~~~v 142 (330)
T 3caw_A 102 NY--LLSHFQDL----KP---------GFLD----GLKNEGYNTVK----VKMGR-------------DL---QKEADML 142 (330)
T ss_dssp CE--EECTTSCC----CT---------THHH----HHHHHTCCEEE----EECSS-------------CH---HHHHHHH
T ss_pred EE--EecCCCCC----CH---------HHHH----HHHHcCCcEEE----EecCC-------------CH---HHHHHHH
Confidence 43 33200000 01 1111 22233465544 34331 22 3334444
Q ss_pred HHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhcc---CCeeeEECCCCcC-CH
Q 043137 234 NTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISD---YPIVSIEDPFDQD-DW 309 (445)
Q Consensus 234 ~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~---~~i~~iEdP~~~~-D~ 309 (445)
+++|+ +++.|++|+ |+.||.++++++ .+.+++ +++.|||||++++ |+
T Consensus 143 -~avr~----~~~~l~vDa-----------------------N~~~~~~~A~~~-~~~l~~~~~~~l~~iEqP~~~~~d~ 193 (330)
T 3caw_A 143 -THIAA----SGMRMRLDF-----------------------NALGSWQTFEKF-MVNLPLTVRPLIEYVEDPFPFDFHA 193 (330)
T ss_dssp -HHHHH----TTCEEEEEC-----------------------TTCSCHHHHHHH-HHTSCTTTGGGEEEEECCSSCCHHH
T ss_pred -HHHhC----CCCeEEEEC-----------------------CCCCCHHHHHHH-HHHhhhhccCCceEEECCCCCCccH
Confidence 34444 378999999 367899999988 456788 9999999999999 99
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+++ |+ + . +||++||+ ++++++++++.+++|++|||++++ |+| +++++|+++|+++++++ +.|+.++
T Consensus 194 ~~~--l~-~--~-iPIa~dEs---~~~~~~~~i~~~a~d~v~~k~~~~-Gi~---~i~~~A~~~gi~~~~~~-~~es~ig 259 (330)
T 3caw_A 194 WGE--AR-K--L-AKIALDNQ---YDKVPWGKIASAPFDVIVIKPAKT-DVD---KAVAQCQKWNLKLAVTS-YMDHPVG 259 (330)
T ss_dssp HHH--HT-T--T-SCEEESTT---GGGCCTTTCSSCSCSEEEECTTTS-CHH---HHHHHHHHTTCEEEEBC-CSCCHHH
T ss_pred HHH--HH-h--c-CcEEeCCC---CHHHHHHHHHcCCCCEEEechhhc-cHH---HHHHHHHHcCCcEEEeC-ccCcHHH
Confidence 999 77 4 3 99999997 489999999999999999999999 999 99999999999987765 5688765
Q ss_pred --HHHHHHh
Q 043137 390 --FIADLSV 396 (445)
Q Consensus 390 --~~~~la~ 396 (445)
+.+||+.
T Consensus 260 ~aa~~hlaa 268 (330)
T 3caw_A 260 VVHAVGVAM 268 (330)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 4566666
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.5e-26 Score=224.40 Aligned_cols=138 Identities=18% Similarity=0.312 Sum_probs=105.7
Q ss_pred cChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECC
Q 043137 224 QENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDP 303 (445)
Q Consensus 224 ~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP 303 (445)
+.+.++++++|+++ | +++.|++|+ |+.||.+++++++ +.++++++.|||||
T Consensus 108 ~~d~~~v~avR~~~---G--~~~~L~vDa-----------------------N~~w~~~~A~~~~-~~L~~~~l~~iEqP 158 (327)
T 2opj_A 108 ANDVARVEAVRDAL---G--PRGRVRIDV-----------------------NGAWDVDTAVRMI-RLLDRFELEYVEQP 158 (327)
T ss_dssp -CHHHHHHHHHHHH---C--TTSEEEEEC-----------------------TTCSCHHHHHHHH-HHHGGGCEEEEECC
T ss_pred HHHHHHHHHHHHHh---C--CCCEEEEEC-----------------------CCCCCHHHHHHHH-HHHHhcCCcEEeCC
Confidence 44567777777665 5 589999999 3678999999884 56889999999999
Q ss_pred CCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCC
Q 043137 304 FDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRS 383 (445)
Q Consensus 304 ~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~ 383 (445)
++ +++++++|+++++ +||++||+. .++++++++++.+++|++|||++++||||+++++++ .+|+++++++ +
T Consensus 159 ~~--~~~~~~~l~~~~~--iPIa~dEs~-~~~~~~~~~i~~~a~d~i~ik~~~~GGit~~~~ia~---~~gi~~~~~~-~ 229 (327)
T 2opj_A 159 CA--TVDELAEVRRRVS--VPIAADESI-RRAEDPLRVRDAEAADVVVLKVQPLGGVRAALRLAE---ECGLPVVVSS-A 229 (327)
T ss_dssp SS--SHHHHHHHHHHCS--SCEEC------------CTTTTTCCSBEEECHHHHTSHHHHHHHHH---HTCSCEEEBC-C
T ss_pred CC--CHHHHHHHHhhCC--CCEEcCCCC-CCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHH---HcCCcEEEcC-C
Confidence 97 5899999999998 999999985 568999999999999999999999999999998864 4699998877 4
Q ss_pred CCChhhH--HHHHHhhhc
Q 043137 384 GETEDTF--IADLSVGLA 399 (445)
Q Consensus 384 ~et~~~~--~~~la~a~~ 399 (445)
.|+.++. ++||+.++.
T Consensus 230 ~es~ig~aa~~hlaaa~~ 247 (327)
T 2opj_A 230 VETSVGLAAGVALAAALP 247 (327)
T ss_dssp SCCHHHHHHHHHHHHHSS
T ss_pred CcCHHHHHHHHHHHHhCC
Confidence 6887765 456665543
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0065 Score=59.92 Aligned_cols=73 Identities=12% Similarity=0.132 Sum_probs=58.0
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEECCC------------CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhc
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIEDPF------------DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKE 344 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEdP~------------~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~ 344 (445)
.+++.++.+++ .+.+++.++.||+-.. +..+++..+++++.++ +||++... +++++++.++++.
T Consensus 234 ~g~~~~~~~~l-a~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~--iPVi~~Gg-i~t~e~a~~~l~~ 309 (349)
T 3hgj_A 234 GGWSLEDTLAF-ARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVG--LRTGAVGL-ITTPEQAETLLQA 309 (349)
T ss_dssp TSCCHHHHHHH-HHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHC--CEEEECSS-CCCHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcC--ceEEEECC-CCCHHHHHHHHHC
Confidence 46788888876 5678889999988542 2246778899999998 99977776 4679999999999
Q ss_pred CCCCEEEec
Q 043137 345 KTCNALLLK 353 (445)
Q Consensus 345 ~a~d~v~ik 353 (445)
+.+|.|.+-
T Consensus 310 G~aD~V~iG 318 (349)
T 3hgj_A 310 GSADLVLLG 318 (349)
T ss_dssp TSCSEEEES
T ss_pred CCceEEEec
Confidence 999999863
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.046 Score=53.49 Aligned_cols=73 Identities=5% Similarity=0.098 Sum_probs=57.8
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEE--------C--CCCc-CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcC
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIE--------D--PFDQ-DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEK 345 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iE--------d--P~~~-~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~ 345 (445)
.+++.++++++ .+.+++.++.||+ + |..+ .+++..+++++.++ +||++... +++++++.++++.+
T Consensus 224 ~g~~~~~~~~~-a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~--iPVi~~Gg-i~s~~~a~~~l~~G 299 (338)
T 1z41_A 224 KGLDIADHIGF-AKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQAD--MATGAVGM-ITDGSMAEEILQNG 299 (338)
T ss_dssp TSCCHHHHHHH-HHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHC--CEEEECSS-CCSHHHHHHHHHTT
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCC--CCEEEECC-CCCHHHHHHHHHcC
Confidence 46788888876 5678889988887 2 3333 36788899999998 99977765 46799999999999
Q ss_pred CCCEEEec
Q 043137 346 TCNALLLK 353 (445)
Q Consensus 346 a~d~v~ik 353 (445)
.+|.|.+-
T Consensus 300 ~aD~V~iG 307 (338)
T 1z41_A 300 RADLIFIG 307 (338)
T ss_dssp SCSEEEEC
T ss_pred CceEEeec
Confidence 99999864
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.13 Score=50.49 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=54.8
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECC----------CC-cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCC
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDP----------FD-QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKT 346 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP----------~~-~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a 346 (445)
+++.++.+++ .+.+++. +.||+-. .. ..+++..+++++.++ +||++... +++++++.++++.+.
T Consensus 226 g~~~~~~~~~-a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~--iPVi~~Gg-i~t~e~Ae~~l~~G~ 300 (343)
T 3kru_A 226 GINIDMMVEY-INMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCN--IKTSAVGL-ITTQELAEEILSNER 300 (343)
T ss_dssp SCCHHHHHHH-HHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHT--CEEEEESS-CCCHHHHHHHHHTTS
T ss_pred CccHHHHHHH-HHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHhcC--cccceeee-eeHHHHHHHHHhchh
Confidence 5778888876 5678888 8888762 12 236777789999998 99976665 467999999999999
Q ss_pred CCEEEe
Q 043137 347 CNALLL 352 (445)
Q Consensus 347 ~d~v~i 352 (445)
+|.|.+
T Consensus 301 aD~V~i 306 (343)
T 3kru_A 301 ADLVAL 306 (343)
T ss_dssp CSEEEE
T ss_pred hHHHHH
Confidence 999885
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.05 Score=54.10 Aligned_cols=70 Identities=10% Similarity=-0.011 Sum_probs=54.6
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECCCCc-----CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEe
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDPFDQ-----DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP~~~-----~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
+++.++++++ .+.++++++.||+.+... ...+ .+++++.++ +||++.... +++++.++++.+.+|+|.+
T Consensus 262 ~~~~~~~~~l-a~~l~~~Gvd~i~v~~~~~~~~~~~~~-~~~ir~~~~--iPvi~~G~i--t~~~a~~~l~~g~aD~V~i 335 (379)
T 3aty_A 262 SNPEALTKHL-CKKIEPLSLAYLHYLRGDMVNQQIGDV-VAWVRGSYS--GVKISNLRY--DFEEADQQIREGKVDAVAF 335 (379)
T ss_dssp SCHHHHHHHH-HHHHGGGCCSEEEEECSCTTSCCCCCH-HHHHHTTCC--SCEEEESSC--CHHHHHHHHHTTSCSEEEE
T ss_pred CCCHHHHHHH-HHHHHHhCCCEEEEcCCCcCCCCccHH-HHHHHHHCC--CcEEEECCC--CHHHHHHHHHcCCCeEEEe
Confidence 4667788776 567889999999876521 1125 788998887 999777764 5999999999999999986
Q ss_pred c
Q 043137 353 K 353 (445)
Q Consensus 353 k 353 (445)
-
T Consensus 336 g 336 (379)
T 3aty_A 336 G 336 (379)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.06 Score=53.24 Aligned_cols=70 Identities=7% Similarity=-0.014 Sum_probs=54.7
Q ss_pred cCHHHHHHHHHHhhccCCeeeEECC-----------C-CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCC
Q 043137 279 ISGDALKDLYKSFISDYPIVSIEDP-----------F-DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKT 346 (445)
Q Consensus 279 ~t~~~ai~~~~~~l~~~~i~~iEdP-----------~-~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a 346 (445)
++.++.+++ .+.+++.++.||+-. . +..+++..+++++.++ +||++... +++++++.++++.+.
T Consensus 243 ~~~~~~~~l-a~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~--iPVi~~Gg-I~s~e~a~~~l~~G~ 318 (363)
T 3l5l_A 243 QTLEESIEL-ARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAK--LPVTSAWG-FGTPQLAEAALQANQ 318 (363)
T ss_dssp HHHHHHHHH-HHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHT--CCEEECSS-TTSHHHHHHHHHTTS
T ss_pred CCHHHHHHH-HHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcC--CcEEEeCC-CCCHHHHHHHHHCCC
Confidence 677888876 567888898888732 1 1236777889999998 99977765 467999999999999
Q ss_pred CCEEEe
Q 043137 347 CNALLL 352 (445)
Q Consensus 347 ~d~v~i 352 (445)
+|.|.+
T Consensus 319 aD~V~i 324 (363)
T 3l5l_A 319 LDLVSV 324 (363)
T ss_dssp CSEEEC
T ss_pred ccEEEe
Confidence 999875
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.041 Score=54.72 Aligned_cols=71 Identities=6% Similarity=-0.039 Sum_probs=52.7
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECCCC------c--CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCE
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDPFD------Q--DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNA 349 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP~~------~--~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~ 349 (445)
.++.++++++ .+.++++++.||+-+.+ + .+++..+++++.++ +||++.... +++++.++++.+.+|+
T Consensus 252 ~~~~~~~~~l-a~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~~--iPvi~~G~i--~~~~a~~~l~~g~aD~ 326 (376)
T 1icp_A 252 TNPTALGLYM-VESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYK--GTFIVAGGY--DREDGNRALIEDRADL 326 (376)
T ss_dssp SCHHHHHHHH-HHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCC--SCEEEESSC--CHHHHHHHHHTTSCSE
T ss_pred CCCHHHHHHH-HHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHcC--CCEEEeCCC--CHHHHHHHHHCCCCcE
Confidence 3455677766 66789999999987532 1 23344578899988 898766654 5999999999999999
Q ss_pred EEec
Q 043137 350 LLLK 353 (445)
Q Consensus 350 v~ik 353 (445)
|.+-
T Consensus 327 V~~g 330 (376)
T 1icp_A 327 VAYG 330 (376)
T ss_dssp EEES
T ss_pred Eeec
Confidence 9864
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.15 Score=49.63 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHhhccCCeeeEECCCCc-CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcc
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDPFDQ-DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 358 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP~~~-~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G 358 (445)
+.+..++.+.+ +++.+-..+--.++. ++.+.+..++++++ +||++|-.+ ++.-+...++.+ +|.+.|++..+|
T Consensus 44 D~~atv~Qi~~-l~~aG~diVRvavp~~~~a~al~~I~~~~~--vPlvaDiHf--~~~lal~a~e~G-~dklRINPGNig 117 (366)
T 3noy_A 44 DVEATLNQIKR-LYEAGCEIVRVAVPHKEDVEALEEIVKKSP--MPVIADIHF--APSYAFLSMEKG-VHGIRINPGNIG 117 (366)
T ss_dssp CHHHHHHHHHH-HHHTTCCEEEEECCSHHHHHHHHHHHHHCS--SCEEEECCS--CHHHHHHHHHTT-CSEEEECHHHHS
T ss_pred CHHHHHHHHHH-HHHcCCCEEEeCCCChHHHHHHHHHHhcCC--CCEEEeCCC--CHHHHHHHHHhC-CCeEEECCcccC
Confidence 34445544443 455665666556654 56788999999988 999999643 466666666543 788999999999
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCC
Q 043137 359 SVTESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 359 Git~a~~ia~~A~~~g~~~~~~~~ 382 (445)
.-....+++..|+++|+++-+|-+
T Consensus 118 ~~~~~~~vv~~ak~~~~piRIGvN 141 (366)
T 3noy_A 118 KEEIVREIVEEAKRRGVAVRIGVN 141 (366)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred chhHHHHHHHHHHHcCCCEEEecC
Confidence 999999999999999999988743
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=95.04 E-value=0.1 Score=51.59 Aligned_cols=71 Identities=11% Similarity=0.024 Sum_probs=55.5
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECCCC------cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEE
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDPFD------QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALL 351 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP~~------~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ 351 (445)
.++.++++++ .+.++++++.||+-+.. ..+++..+++++.++ +||++.... +++++.++++.+.+|+|.
T Consensus 247 ~~~~~~~~~~-a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~~~--iPvi~~Ggi--t~~~a~~~l~~g~aD~V~ 321 (364)
T 1vyr_A 247 PNEEADALYL-IEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFH--GVIIGAGAY--TAEKAEDLIGKGLIDAVA 321 (364)
T ss_dssp TTHHHHHHHH-HHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCC--SEEEEESSC--CHHHHHHHHHTTSCSEEE
T ss_pred CCCHHHHHHH-HHHHHHhCCCEEEEecCcccCCCcccHHHHHHHHHHCC--CCEEEECCc--CHHHHHHHHHCCCccEEE
Confidence 3466677766 66788899999987642 345677788999998 999776664 599999999999999998
Q ss_pred ec
Q 043137 352 LK 353 (445)
Q Consensus 352 ik 353 (445)
+=
T Consensus 322 ~g 323 (364)
T 1vyr_A 322 FG 323 (364)
T ss_dssp ES
T ss_pred EC
Confidence 64
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.073 Score=56.94 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=54.8
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEE-------CCCC--------cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHH
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIE-------DPFD--------QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKA 341 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iE-------dP~~--------~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~ 341 (445)
.+++.++++++ .+.++++++.||+ .+++ ...++..+++++.++ +||++... +++++++.++
T Consensus 223 ~g~~~~~~~~~-a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--iPvi~~Gg-i~~~~~a~~~ 298 (671)
T 1ps9_A 223 DGGTFAETVEL-AQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVS--LPLVTTNR-INDPQVADDI 298 (671)
T ss_dssp TCCCHHHHHHH-HHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCS--SCEEECSS-CCSHHHHHHH
T ss_pred CCCCHHHHHHH-HHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhcC--ceEEEeCC-CCCHHHHHHH
Confidence 35788888876 5668888988885 3333 133566778888887 99977776 4579999999
Q ss_pred HhcCCCCEEEe
Q 043137 342 IKEKTCNALLL 352 (445)
Q Consensus 342 i~~~a~d~v~i 352 (445)
++.+.+|.|.+
T Consensus 299 l~~g~aD~V~~ 309 (671)
T 1ps9_A 299 LSRGDADMVSM 309 (671)
T ss_dssp HHTTSCSEEEE
T ss_pred HHcCCCCEEEe
Confidence 99999999984
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.45 Score=46.88 Aligned_cols=71 Identities=10% Similarity=0.013 Sum_probs=53.4
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECCCC------cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEE
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDPFD------QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALL 351 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP~~------~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ 351 (445)
.++.++++++ .+.+++.++.||+-.-. ...++..+++++.++ +||++.... +++++.++++.+.+|.|.
T Consensus 246 ~~~~~~~~~~-a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~i~~~~~--iPvi~~Ggi--~~~~a~~~l~~g~aD~V~ 320 (365)
T 2gou_A 246 ADPILTYTAA-AALLNKHRIVYLHIAEVDWDDAPDTPVSFKRALREAYQ--GVLIYAGRY--NAEKAEQAINDGLADMIG 320 (365)
T ss_dssp SSHHHHHHHH-HHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCC--SEEEEESSC--CHHHHHHHHHTTSCSEEE
T ss_pred CCCHHHHHHH-HHHHHHcCCCEEEEeCCCcCCCCCccHHHHHHHHHHCC--CcEEEeCCC--CHHHHHHHHHCCCcceeh
Confidence 4566777766 56788899888875432 124566788999998 998666554 599999999999999998
Q ss_pred ec
Q 043137 352 LK 353 (445)
Q Consensus 352 ik 353 (445)
+=
T Consensus 321 ig 322 (365)
T 2gou_A 321 FG 322 (365)
T ss_dssp CC
T ss_pred hc
Confidence 64
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.33 Score=48.08 Aligned_cols=71 Identities=6% Similarity=-0.061 Sum_probs=52.9
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECCCC------c-CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEE
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDPFD------Q-DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNAL 350 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP~~------~-~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v 350 (445)
+++.++++++ .+.++++++.||+-.-. + .+++..+++++.++ +||++.... + ++++.++++.+.+|+|
T Consensus 251 ~~~~~~~~~l-a~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~ik~~~~--iPvi~~Ggi-~-~~~a~~~l~~g~aD~V 325 (377)
T 2r14_A 251 DEPEAMAFYL-AGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFK--GGLIYCGNY-D-AGRAQARLDDNTADAV 325 (377)
T ss_dssp SCHHHHHHHH-HHHHHHTTCSEEEEECCC------CCCTTHHHHHHHHCC--SEEEEESSC-C-HHHHHHHHHTTSCSEE
T ss_pred CCCHHHHHHH-HHHHHHcCCCEEEEeCCcccCCCCcchHHHHHHHHHHCC--CCEEEECCC-C-HHHHHHHHHCCCceEE
Confidence 4567777776 66788899888874321 1 24556788999988 998666553 4 9999999999999999
Q ss_pred Eec
Q 043137 351 LLK 353 (445)
Q Consensus 351 ~ik 353 (445)
.+=
T Consensus 326 ~ig 328 (377)
T 2r14_A 326 AFG 328 (377)
T ss_dssp EES
T ss_pred eec
Confidence 863
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=93.06 E-value=0.3 Score=48.15 Aligned_cols=68 Identities=7% Similarity=0.021 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEe
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
+.++.+++ .+.+++.++.||+-.-.....+..+++++.++ +||++... + +++++.++++.+.+|.|.+
T Consensus 248 ~~~~~~~l-a~~l~~~Gvd~i~v~~~~~~~~~~~~ik~~~~--iPvi~~Gg-i-t~e~a~~~l~~G~aD~V~i 315 (361)
T 3gka_A 248 PAATFGHV-ARELGRRRIAFLFARESFGGDAIGQQLKAAFG--GPFIVNEN-F-TLDSAQAALDAGQADAVAW 315 (361)
T ss_dssp HHHHHHHH-HHHHHHTTCSEEEEECCCSTTCCHHHHHHHHC--SCEEEESS-C-CHHHHHHHHHTTSCSEEEE
T ss_pred cHHHHHHH-HHHHHHcCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEeCC-C-CHHHHHHHHHcCCccEEEE
Confidence 34566655 66788899999885543222234678888888 88855554 3 5999999999999999886
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.3 Score=48.15 Aligned_cols=67 Identities=9% Similarity=0.067 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEe
Q 043137 281 GDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 281 ~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
.++.+++ .+.+++.++.||+-.-.....+..+++++.++ +||++... + +++++.++++.+.+|.|.+
T Consensus 241 ~~~~~~l-a~~l~~~Gvd~i~v~~~~~~~~~~~~ik~~~~--iPvi~~Gg-i-t~e~a~~~l~~g~aD~V~i 307 (362)
T 4ab4_A 241 AETFTYV-ARELGKRGIAFICSREREADDSIGPLIKEAFG--GPYIVNER-F-DKASANAALASGKADAVAF 307 (362)
T ss_dssp HHHHHHH-HHHHHHTTCSEEEEECCCCTTCCHHHHHHHHC--SCEEEESS-C-CHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHH-HHHHHHhCCCEEEECCCCCCHHHHHHHHHHCC--CCEEEeCC-C-CHHHHHHHHHcCCccEEEE
Confidence 4556665 66788899999875443221134678888888 88855544 3 5999999999999999985
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=92.28 E-value=0.68 Score=45.15 Aligned_cols=72 Identities=7% Similarity=0.063 Sum_probs=53.1
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEEC--------C--CC-cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCC
Q 043137 278 KISGDALKDLYKSFISDYPIVSIED--------P--FD-QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKT 346 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEd--------P--~~-~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a 346 (445)
+++.++.+++ .+.+++.++.||+= + .. ..+++-.+++++.++ +||++.-. +++++++.++++.+.
T Consensus 225 g~~~~~~~~l-a~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~--iPVi~~Gg-I~s~e~a~~~L~~G~ 300 (340)
T 3gr7_A 225 GLTAKDYVPY-AKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREAD--IPTGAVGL-ITSGWQAEEILQNGR 300 (340)
T ss_dssp SCCGGGHHHH-HHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTT--CCEEEESS-CCCHHHHHHHHHTTS
T ss_pred CCCHHHHHHH-HHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcC--CcEEeeCC-CCCHHHHHHHHHCCC
Confidence 5677787776 56678888777752 1 11 235677788999987 99855544 467999999999999
Q ss_pred CCEEEec
Q 043137 347 CNALLLK 353 (445)
Q Consensus 347 ~d~v~ik 353 (445)
+|.|.+-
T Consensus 301 aD~V~iG 307 (340)
T 3gr7_A 301 ADLVFLG 307 (340)
T ss_dssp CSEEEEC
T ss_pred eeEEEec
Confidence 9998863
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=90.30 E-value=0.82 Score=45.67 Aligned_cols=71 Identities=3% Similarity=-0.083 Sum_probs=49.6
Q ss_pred ccCHHHHHHHHHHhhccCC------eeeEEC--------CCCc--------CCHHHHHHHHHHhCCCceEEeCcccccCH
Q 043137 278 KISGDALKDLYKSFISDYP------IVSIED--------PFDQ--------DDWEHYAKLTSEVGEKVQIVGDDLLVTNP 335 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~------i~~iEd--------P~~~--------~D~~~~~~L~~~~~~~vpI~gde~~~~~~ 335 (445)
.++.++++++ .+.+++.+ +.||+- +..+ .+++..+++++.++ +||++.... ++
T Consensus 256 ~~~~~~~~~l-a~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~--iPvi~~G~i--~~ 330 (402)
T 2hsa_B 256 SNPLSLGLAV-VERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQ--GTFICSGGY--TR 330 (402)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCS--SCEEEESSC--CH
T ss_pred CCCHHHHHHH-HHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHCC--CCEEEeCCC--CH
Confidence 3456677765 56677777 777653 1111 13445577888887 898665553 59
Q ss_pred HHHHHHHhcCCCCEEEec
Q 043137 336 KRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 336 ~~~~~~i~~~a~d~v~ik 353 (445)
+++.++++.+.+|+|.+=
T Consensus 331 ~~a~~~l~~g~aD~V~ig 348 (402)
T 2hsa_B 331 ELGIEAVAQGDADLVSYG 348 (402)
T ss_dssp HHHHHHHHTTSCSEEEES
T ss_pred HHHHHHHHCCCCceeeec
Confidence 999999999999999864
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=87.03 E-value=3.8 Score=41.03 Aligned_cols=72 Identities=8% Similarity=0.156 Sum_probs=48.3
Q ss_pred ccCHHHHHHHHHHhhcc-CCeeeEE------------CCC-Cc-CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHH
Q 043137 278 KISGDALKDLYKSFISD-YPIVSIE------------DPF-DQ-DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAI 342 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~-~~i~~iE------------dP~-~~-~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i 342 (445)
+++.++.+++ .+.+++ .++.||+ .|. .+ .+.+-.+.+++.++.++||++--. +++++++.+++
T Consensus 260 G~~~ed~~~l-a~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~~iPVI~~Gg-I~t~e~Ae~~L 337 (419)
T 3l5a_A 260 GYTIDEFNQL-IDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLAGRIPLIASGG-INSPESALDAL 337 (419)
T ss_dssp EECHHHHHHH-HHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHTTSSCEEECSS-CCSHHHHHHHG
T ss_pred CCCHHHHHHH-HHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHHHHHHHHHcCCCCeEEEECC-CCCHHHHHHHH
Confidence 5777888876 556777 7777664 111 11 133456788888844488855443 35799999999
Q ss_pred hcCCCCEEEec
Q 043137 343 KEKTCNALLLK 353 (445)
Q Consensus 343 ~~~a~d~v~ik 353 (445)
+. +|.|.+=
T Consensus 338 ~~--aDlVaiG 346 (419)
T 3l5a_A 338 QH--ADMVGMS 346 (419)
T ss_dssp GG--CSEEEES
T ss_pred Hh--CCcHHHH
Confidence 88 8988753
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=84.45 E-value=3.9 Score=38.71 Aligned_cols=123 Identities=16% Similarity=0.136 Sum_probs=78.1
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECCC--C-------cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCC
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDPF--D-------QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCN 348 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP~--~-------~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d 348 (445)
.++.++.+++ .+.+++.++..||.-. . .++++-.+.+++.. +++++.= ..+..++++.++.+ ++
T Consensus 22 ~~~~e~k~~i-~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~~--~~~v~~l---~~n~~~i~~a~~~G-~~ 94 (295)
T 1ydn_A 22 FVPTADKIAL-INRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRAD--GVRYSVL---VPNMKGYEAAAAAH-AD 94 (295)
T ss_dssp CCCHHHHHHH-HHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCS--SSEEEEE---CSSHHHHHHHHHTT-CS
T ss_pred CcCHHHHHHH-HHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhCC--CCEEEEE---eCCHHHHHHHHHCC-CC
Confidence 3678888887 5667889998998733 1 14555666665442 3777432 14688999988875 57
Q ss_pred EEEecc--C--------C---cccHHHHHHHHHHHHHcCCcEE--ecCCC-----CCChhhHH---HHHHhhhcCCcccc
Q 043137 349 ALLLKV--N--------Q---IGSVTESIEAVRMSKQAGWGVM--ASHRS-----GETEDTFI---ADLSVGLATGQIKT 405 (445)
Q Consensus 349 ~v~ik~--~--------~---~GGit~a~~ia~~A~~~g~~~~--~~~~~-----~et~~~~~---~~la~a~~~~~~~~ 405 (445)
.|.+.. + + -.-+..+++++++|+++|+.+. +++.. ..+..... +..+...++..+.+
T Consensus 95 ~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l 174 (295)
T 1ydn_A 95 EIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSL 174 (295)
T ss_dssp EEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 788774 2 2 2255666777999999999986 44421 12333333 44445677777765
Q ss_pred CC
Q 043137 406 GA 407 (445)
Q Consensus 406 G~ 407 (445)
.+
T Consensus 175 ~D 176 (295)
T 1ydn_A 175 GD 176 (295)
T ss_dssp EE
T ss_pred cC
Confidence 44
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=83.91 E-value=4.5 Score=38.95 Aligned_cols=45 Identities=13% Similarity=0.167 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccC
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN 355 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~ 355 (445)
++..+++++.++.++||++.-- +.+.+++.++++.+ +|.|++--.
T Consensus 276 ~~~i~~i~~~~~~~ipVi~~GG-I~~~~da~~~l~~G-Ad~V~igr~ 320 (336)
T 1f76_A 276 TEIIRRLSLELNGRLPIIGVGG-IDSVIAAREKIAAG-ASLVQIYSG 320 (336)
T ss_dssp HHHHHHHHHHHTTSSCEEEESS-CCSHHHHHHHHHHT-CSEEEESHH
T ss_pred HHHHHHHHHHhCCCCCEEEECC-CCCHHHHHHHHHCC-CCEEEeeHH
Confidence 3556788888843499866554 56799999999988 899987544
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=83.89 E-value=4 Score=43.84 Aligned_cols=42 Identities=7% Similarity=0.086 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEe
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
+++..+++++.++ +||++-.. +++++++.++++.+.+|+|.+
T Consensus 279 ~~~~~~~i~~~~~--~pvi~~G~-i~~~~~a~~~l~~g~aD~V~~ 320 (729)
T 1o94_A 279 TIPWVKLVKQVSK--KPVLGVGR-YTDPEKMIEIVTKGYADIIGC 320 (729)
T ss_dssp THHHHHHHHTTCS--SCEECCSC-CCCHHHHHHHHHTTSCSBEEE
T ss_pred cHHHHHHHHHHCC--CEEEEeCC-CCCHHHHHHHHHCCCCCEEEe
Confidence 4566677888887 99977665 467999999999999999984
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=82.63 E-value=2.7 Score=38.53 Aligned_cols=109 Identities=13% Similarity=0.144 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHhhccCCeeeEECCCCc-CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcc
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDPFDQ-DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 358 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP~~~-~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G 358 (445)
+++++++. .+.+-+.++.+||=++.. +..+..++++++++. +-|-++ . +.+.++++..++.++-=++.+.
T Consensus 44 ~~~~a~~~-a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~~~-~~iGaG-T-Vlt~~~a~~Ai~AGA~fIvsP~----- 114 (232)
T 4e38_A 44 NAEDIIPL-GKVLAENGLPAAEITFRSDAAVEAIRLLRQAQPE-MLIGAG-T-ILNGEQALAAKEAGATFVVSPG----- 114 (232)
T ss_dssp SGGGHHHH-HHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTT-CEEEEE-C-CCSHHHHHHHHHHTCSEEECSS-----
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCC-CEEeEC-C-cCCHHHHHHHHHcCCCEEEeCC-----
Confidence 44677776 445566899999988864 345777889988862 444333 3 3468999999988874443332
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCcccc
Q 043137 359 SVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKT 405 (445)
Q Consensus 359 Git~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~ 405 (445)
+ ..++++.|+.+|++++.|.+ |... +.-|...++.++|+
T Consensus 115 -~--~~~vi~~~~~~gi~~ipGv~---TptE--i~~A~~~Gad~vK~ 153 (232)
T 4e38_A 115 -F--NPNTVRACQEIGIDIVPGVN---NPST--VEAALEMGLTTLKF 153 (232)
T ss_dssp -C--CHHHHHHHHHHTCEEECEEC---SHHH--HHHHHHTTCCEEEE
T ss_pred -C--CHHHHHHHHHcCCCEEcCCC---CHHH--HHHHHHcCCCEEEE
Confidence 2 24677789999999877764 2111 22234556777775
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=80.41 E-value=8.8 Score=39.45 Aligned_cols=94 Identities=12% Similarity=0.176 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccC-------C------cccHHHHHHHHHHHHHcCC
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN-------Q------IGSVTESIEAVRMSKQAGW 375 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~-------~------~GGit~a~~ia~~A~~~g~ 375 (445)
++..+++++..+ .++|+++.. .+.+.++.+++.+ +|+|.+-+. | ..-+|...++++.|+.+|+
T Consensus 310 ~~~i~~ik~~~p-~~~viaGNV--aT~e~a~~Li~aG-AD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~v 385 (556)
T 4af0_A 310 IEFIKWIKQTYP-KIDVIAGNV--VTREQAAQLIAAG-ADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGI 385 (556)
T ss_dssp HHHHHHHHHHCT-TSEEEEEEE--CSHHHHHHHHHHT-CSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTC
T ss_pred HHHHHHHHhhCC-cceEEeccc--cCHHHHHHHHHcC-CCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHcCC
Confidence 456677887775 489988864 3589999999887 688775543 1 2458999999999999999
Q ss_pred cEEecCCCCCChhhHHHHHHhhhcCCccccCCCC
Q 043137 376 GVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 376 ~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+++.....--+++ +-.|+|+++.++.+|++.
T Consensus 386 pvIADGGI~~sGD---i~KAlaaGAd~VMlGsll 416 (556)
T 4af0_A 386 PCIADGGIGNIGH---IAKALALGASAVMMGGLL 416 (556)
T ss_dssp CEEEESCCCSHHH---HHHHHHTTCSEEEESTTT
T ss_pred CEEecCCcCcchH---HHHHhhcCCCEEEEchhh
Confidence 9866553222222 233566678999998854
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 445 | ||||
| d1w6ta1 | 296 | c.1.11.1 (A:138-433) Enolase {Streptococcus pneumo | 1e-134 | |
| d2al1a1 | 295 | c.1.11.1 (A:142-436) Enolase {Baker's yeast (Sacch | 1e-131 | |
| d2akza1 | 294 | c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens) | 1e-128 | |
| d2ptza1 | 291 | c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [ | 1e-128 | |
| d2fyma1 | 292 | c.1.11.1 (A:140-431) Enolase {Escherichia coli [Ta | 1e-123 | |
| d1kkoa1 | 251 | c.1.11.2 (A:161-411) beta-Methylaspartase {Citroba | 6e-62 | |
| d1kcza1 | 253 | c.1.11.2 (A:161-413) beta-Methylaspartase {Clostri | 2e-54 | |
| d2akza2 | 139 | d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), | 7e-50 | |
| d2al1a2 | 141 | d.54.1.1 (A:1-141) Enolase {Baker's yeast (Sacchar | 4e-49 | |
| d2ptza2 | 139 | d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [Ta | 2e-48 | |
| d2fyma2 | 139 | d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxI | 6e-48 | |
| d1w6ta2 | 137 | d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoni | 8e-48 | |
| d1pdza2 | 139 | d.54.1.1 (A:1-139) Enolase {European lobster (Homa | 9e-45 |
| >d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae [TaxId: 1313]} Length = 296 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Score = 386 bits (992), Expect = e-134
Identities = 137/293 (46%), Positives = 197/293 (67%), Gaps = 6/293 (2%)
Query: 150 VLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQD 209
VLP P N+INGGSH+ +A QEFMILPVGA FKEA++ G E++H LK ++K + +
Sbjct: 4 VLPTPMMNIINGGSHSDAPIAFQEFMILPVGAPTFKEALRYGAEIFHALKKILKSRGLE- 62
Query: 210 ATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTG--KVVIGMDVAASEFYGSDKTYDLN 267
T VGDEGGFAP + ++G+E + AI AGY V +G D A+SEFY + +
Sbjct: 63 -TAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGKDVFLGFDCASSEFY-DKERKVYD 120
Query: 268 FKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVG 327
+ + +G+ + D + ++ YPI++IED D++DW+ + LT +G+KVQ+VG
Sbjct: 121 YTKFEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGMDENDWDGWKALTERLGKKVQLVG 180
Query: 328 DDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETE 387
DD VTN + + I+E N++L+KVNQIG++TE+ EA+ M+K+AG+ + SHRSGETE
Sbjct: 181 DDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTETFEAIEMAKEAGYTAVVSHRSGETE 240
Query: 388 DTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAK-FR 439
D+ IAD++V GQIKTG+ R++R+AKYNQLLRIE++LG A Y G K F
Sbjct: 241 DSTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGEVAEYRGLKSFY 293
|
| >d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 377 bits (970), Expect = e-131
Identities = 184/290 (63%), Positives = 219/290 (75%), Gaps = 3/290 (1%)
Query: 150 VLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQD 209
VLPVP NV+NGGSHAG LA+QEFMI P GA F EA+++G EVYH+LK++ KK+YG
Sbjct: 4 VLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFAEALRIGSEVYHNLKSLTKKRYGAS 63
Query: 210 ATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFK 269
A NVGDEGG APNIQ +E L+L+ AI AG+ GKV IG+D A+SEF+ D YDL+FK
Sbjct: 64 AGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFF-KDGKYDLDFK 122
Query: 270 EENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDD 329
N+D S+ ++G L DLY S + YPIVSIEDPF +DDWE ++ G QIV DD
Sbjct: 123 NPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFAEDDWEAWSHFFKTAGI--QIVADD 180
Query: 330 LLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389
L VTNPKR+ AI++K +ALLLKVNQIG+++ESI+A + S AGWGVM SHRSGETEDT
Sbjct: 181 LTVTNPKRIATAIEKKAADALLLKVNQIGTLSESIKAAQDSFAAGWGVMVSHRSGETEDT 240
Query: 390 FIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFR 439
FIADL VGL TGQIKTGAP RSERLAK NQLLRIEEELG AV+AG F
Sbjct: 241 FIADLVVGLRTGQIKTGAPARSERLAKLNQLLRIEEELGDNAVFAGENFH 290
|
| >d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Score = 372 bits (955), Expect = e-128
Identities = 215/294 (73%), Positives = 247/294 (84%), Gaps = 4/294 (1%)
Query: 148 NLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYG 207
+L+LPVPAFNVINGGSHAGNKLAMQEFMILPVGA F++AM++G EVYH LK VIK KYG
Sbjct: 2 DLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYG 61
Query: 208 QDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLN 267
+DATNVGDEGGFAPNI EN E LEL+ AI KAGYT K+VIGMDVAASEFY K YDL+
Sbjct: 62 KDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGK-YDLD 120
Query: 268 FKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVG 327
FK D S+ I+GD L LY+ F+ DYP+VSIEDPFDQDDW ++K T+ VG +QIVG
Sbjct: 121 FKSPT-DPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQDDWAAWSKFTANVG--IQIVG 177
Query: 328 DDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETE 387
DDL VTNPKR+E+A++EK CN LLLKVNQIGSVTE+I+A +++++ GWGVM SHRSGETE
Sbjct: 178 DDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETE 237
Query: 388 DTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFRAP 441
DTFIADL VGL TGQIKTGAPCRSERLAKYNQL+RIEEELG EA +AG FR P
Sbjct: 238 DTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEELGDEARFAGHNFRNP 291
|
| >d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId: 5691]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Score = 370 bits (951), Expect = e-128
Identities = 167/292 (57%), Positives = 211/292 (72%), Gaps = 2/292 (0%)
Query: 147 KNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKY 206
K L LPVP FNVINGG HAGN L QEFMI PV A+ F EA++MG EVYH L+ +IKKKY
Sbjct: 1 KELRLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKKY 60
Query: 207 GQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDL 266
GQDA NVGDEGGFAP I++ E L +L AI +AG+ GK I MD AASE Y +K
Sbjct: 61 GQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHRGKFAICMDCAASETY-DEKKQQY 119
Query: 267 NFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIV 326
N ++ + ++ + L++ Y + DYPIVSIEDP+DQDD+ +A +T + K QIV
Sbjct: 120 NLTFKSPEP-TWVTAEQLRETYCKWAHDYPIVSIEDPYDQDDFAGFAGITEALKGKTQIV 178
Query: 327 GDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGET 386
GDDL VTN +R++ AI++K CN+LLLK+NQIG+++E+I + ++ + GW VM SHRSGET
Sbjct: 179 GDDLTVTNTERIKMAIEKKACNSLLLKINQIGTISEAIASSKLCMENGWSVMVSHRSGET 238
Query: 387 EDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKF 438
EDT+IADL V L +GQIKTGAPCR ER AK NQLLRIEEELGA A + +
Sbjct: 239 EDTYIADLVVALGSGQIKTGAPCRGERTAKLNQLLRIEEELGAHAKFGFPGW 290
|
| >d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId: 562]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Escherichia coli [TaxId: 562]
Score = 357 bits (917), Expect = e-123
Identities = 136/292 (46%), Positives = 189/292 (64%), Gaps = 6/292 (2%)
Query: 147 KNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKY 206
+PVP N+INGG HA N + +QEFMI PVGA KEA++MG EV+HHL V+K K
Sbjct: 2 GKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKG 61
Query: 207 GQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDL 266
T VGDEGG+APN+ N E L ++ A+ AGY +G D+ + + + Y
Sbjct: 62 MN--TAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYE----LGKDITLAMDCAASEFYKD 115
Query: 267 NFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIV 326
+G++ + + + YPIVSIED D+ DW+ +A T +G+K+Q+V
Sbjct: 116 GKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLV 175
Query: 327 GDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGET 386
GDDL VTN K +++ I++ N++L+K NQIGS+TE++ A++M+K AG+ + SHRSGET
Sbjct: 176 GDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGET 235
Query: 387 EDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKF 438
ED IADL+VG A GQIKTG+ RS+R+AKYNQL+RIEE LG +A Y G K
Sbjct: 236 EDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKE 287
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Score = 199 bits (507), Expect = 6e-62
Identities = 48/288 (16%), Positives = 92/288 (31%), Gaps = 54/288 (18%)
Query: 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDA 210
+P F G ++ + MIL G A+ ++++
Sbjct: 5 EAIPLF-----GQSGDDRYIAVDKMILK-GVDVLPHAL------INNVE----------- 41
Query: 211 TNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKE 270
+G +G +E + L+ I + + + + G D
Sbjct: 42 EKLGFKGEK------LREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPV--- 92
Query: 271 ENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFD----QDDWEHYAKLTSEV---GEKV 323
+ + + L K P+ IE P D D +T E+ G V
Sbjct: 93 ------RCA--EYIASLEKEAQ-GLPL-YIEGPVDAGNKPDQIRMLTAITKELTRLGSGV 142
Query: 324 QIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRS 383
+IV D+ T + + +C+ + +K +G + ++AV + G
Sbjct: 143 KIVADEWCNT-YQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTC 201
Query: 384 GETEDTFIADLSVGLAT--GQI--KTGAPCRSERLAKYNQLLRIEEEL 427
ETE + + V LA ++ K G +N++ R L
Sbjct: 202 NETEISARTCVHVALAARPMRMLIKPGMGFDEGLNIVFNEMNRTIALL 249
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Score = 179 bits (456), Expect = 2e-54
Identities = 43/270 (15%), Positives = 87/270 (32%), Gaps = 34/270 (12%)
Query: 173 EFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQ--DATNVGDEGGFAPNIQENKEGL 230
E +PV A G + Y ++ +I K+ A E ++ E +
Sbjct: 3 EINAVPVFAQS-------GDDRYDNVDKMIIKEADVLPHALINNVEEKLGLKGEKLLEYV 55
Query: 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKS 290
+ L I K + G+ D+ D ++ L +
Sbjct: 56 KWLRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIK---------AMA--DYIQTLAE- 103
Query: 291 FISDYPIVSIEDPFDQDDWEHYAKLTSEV-------GEKVQIVGDDLLVTNPKRVEKAIK 343
+ + IE P D +D + + ++ G ++V D+ + V+
Sbjct: 104 AAKPFHL-RIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEW-CNTVEDVKFFTD 161
Query: 344 EKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT--FIADLSVGLATG 401
K + + +K +G V +A+ K G G ET + ++ +
Sbjct: 162 NKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIGMACGAR 221
Query: 402 QI--KTGAPCRSERLAKYNQLLRIEEELGA 429
Q+ K G + N++ R+ +G
Sbjct: 222 QVLAKPGMGVDEGMMIVKNEMNRVLALVGR 251
|
| >d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Score = 163 bits (415), Expect = 7e-50
Identities = 90/146 (61%), Positives = 109/146 (74%), Gaps = 10/146 (6%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGK 62
+I + AR+I DSRGNPTVEVD+ T+ G + RAAVPSGASTGIYEALELRDG YLGK
Sbjct: 1 SIEKIWAREILDSRGNPTVEVDLYTAKG-LFRAAVPSGASTGIYEALELRDGDKQRYLGK 59
Query: 63 GVSKAVSNVNAIIGPAL--AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GV KAV ++N+ I PAL +G EQ +DN M++ LDGT N K K GANAIL V
Sbjct: 60 GVLKAVDHINSTIAPALISSGLSVVEQEKLDNLMLE-LDGTEN-----KSKFGANAILGV 113
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGN 146
SLAVCKAGA +++PLY+HIA+L+GN
Sbjct: 114 SLAVCKAGAAERELPLYRHIAQLAGN 139
|
| >d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 141 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 162 bits (410), Expect = 4e-49
Identities = 81/146 (55%), Positives = 105/146 (71%), Gaps = 10/146 (6%)
Query: 5 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKG 63
++ V AR ++DSRGNPTVEV++TT G V R+ VPSGASTG++EALE+RDG S ++GKG
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKG-VFRSIVPSGASTGVHEALEMRDGDKSKWMGKG 60
Query: 64 VSKAVSNVNAIIGPAL--AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVS 121
V AV NVN +I PA A D +Q A+D++++ LDGT N K KLGANAIL VS
Sbjct: 61 VLHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLIS-LDGTAN-----KSKLGANAILGVS 114
Query: 122 LAVCKAGAHVKKIPLYKHIAELSGNK 147
LA +A A K +PLYKH+A+LS +K
Sbjct: 115 LAASRAAAAEKNVPLYKHLADLSKSK 140
|
| >d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId: 5691]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Score = 160 bits (406), Expect = 2e-48
Identities = 81/144 (56%), Positives = 103/144 (71%), Gaps = 8/144 (5%)
Query: 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLG 61
+TI V R++ DSRGNPTVEV+VTT G V R+AVPSGASTG+YEA ELRDG Y+G
Sbjct: 2 MTIQKVHGREVLDSRGNPTVEVEVTTEKG-VFRSAVPSGASTGVYEACELRDGDKKRYVG 60
Query: 62 KGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVS 121
KG +AV NVN +IGPAL G+D +Q +D ++ +LDGT N K KLGANAIL S
Sbjct: 61 KGCLQAVKNVNEVIGPALIGRDELKQEELDT-LMLRLDGTPN-----KGKLGANAILGCS 114
Query: 122 LAVCKAGAHVKKIPLYKHIAELSG 145
+A+ KA A K +PLY+++A L+G
Sbjct: 115 MAISKAAAAAKGVPLYRYLASLAG 138
|
| >d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Escherichia coli [TaxId: 562]
Score = 158 bits (402), Expect = 6e-48
Identities = 83/142 (58%), Positives = 94/142 (66%), Gaps = 7/142 (4%)
Query: 5 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKG 63
I + R+I DSRGNPTVE +V G V AA PSGASTG EALELRDG +LGKG
Sbjct: 3 IVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKG 62
Query: 64 VSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLA 123
V+KAV+ VN I AL GKD +Q ID M+ LDGT N K K GANAILAVSLA
Sbjct: 63 VTKAVAAVNGPIAQALIGKDAKDQAGIDKIMI-DLDGTEN-----KSKFGANAILAVSLA 116
Query: 124 VCKAGAHVKKIPLYKHIAELSG 145
KA A K +PLY+HIAEL+G
Sbjct: 117 NAKAAAAAKGMPLYEHIAELNG 138
|
| >d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae [TaxId: 1313]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Score = 158 bits (401), Expect = 8e-48
Identities = 76/141 (53%), Positives = 91/141 (64%), Gaps = 8/141 (5%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGS-DY 59
M+I IT V AR++ DSRGNPT+EV+V T G R VPSGASTG +EA+ELRDG Y
Sbjct: 1 MSI-ITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRY 59
Query: 60 LGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILA 119
G G KAV NVN II A+ G D +Q AID + LDGT K KLGANAIL
Sbjct: 60 GGLGTQKAVDNVNNIIAEAIIGYDVRDQQAIDR-AMIALDGT-----PNKGKLGANAILG 113
Query: 120 VSLAVCKAGAHVKKIPLYKHI 140
VS+AV +A A +IPLY ++
Sbjct: 114 VSIAVARAAADYLEIPLYSYL 134
|
| >d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus vulgaris) [TaxId: 6707]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: European lobster (Homarus vulgaris) [TaxId: 6707]
Score = 150 bits (380), Expect = 9e-45
Identities = 82/143 (57%), Positives = 96/143 (67%), Gaps = 8/143 (5%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGK 62
+IT V AR IFDSRGNPTVEVD+ TS G + RAAVPSGASTG++EALE+RDG S Y GK
Sbjct: 1 SITKVFARTIFDSRGNPTVEVDLYTSKG-LFRAAVPSGASTGVHEALEMRDGDKSKYHGK 59
Query: 63 GVSKAVSNVNAIIGPALAGKD-PTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVS 121
V AV NVN +I P + Q + + +LDGT N K LGANAIL VS
Sbjct: 60 SVFNAVKNVNDVIVPEIIKSGLKVTQQKECDEFMCKLDGTEN-----KSSLGANAILGVS 114
Query: 122 LAVCKAGAHVKKIPLYKHIAELS 144
LA+CKAGA IPLY+HIA L+
Sbjct: 115 LAICKAGAAELGIPLYRHIANLA 137
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 445 | |||
| d2akza1 | 294 | Enolase {Human (Homo sapiens), gamma isoform [TaxI | 100.0 | |
| d2al1a1 | 295 | Enolase {Baker's yeast (Saccharomyces cerevisiae) | 100.0 | |
| d2ptza1 | 291 | Enolase {Trypanosoma brucei [TaxId: 5691]} | 100.0 | |
| d1w6ta1 | 296 | Enolase {Streptococcus pneumoniae [TaxId: 1313]} | 100.0 | |
| d2fyma1 | 292 | Enolase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1kcza1 | 253 | beta-Methylaspartase {Clostridium tetanomorphum [T | 100.0 | |
| d1kkoa1 | 251 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 100.0 | |
| d1w6ta2 | 137 | Enolase {Streptococcus pneumoniae [TaxId: 1313]} | 99.97 | |
| d2fyma2 | 139 | Enolase {Escherichia coli [TaxId: 562]} | 99.96 | |
| d2ptza2 | 139 | Enolase {Trypanosoma brucei [TaxId: 5691]} | 99.96 | |
| d2al1a2 | 141 | Enolase {Baker's yeast (Saccharomyces cerevisiae) | 99.95 | |
| d2akza2 | 139 | Enolase {Human (Homo sapiens), gamma isoform [TaxI | 99.95 | |
| d1pdza2 | 139 | Enolase {European lobster (Homarus vulgaris) [TaxI | 99.95 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 99.94 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 99.94 | |
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 99.94 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 99.93 | |
| d2gl5a1 | 278 | Putative dehydratase protein STM2273 {Salmonella t | 99.93 | |
| d2gdqa1 | 256 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 99.93 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 99.93 | |
| d1sjda1 | 242 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 99.92 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 99.92 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 99.92 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 99.92 | |
| d1yeya1 | 252 | RTS beta protein {Xanthomonas campestris pv. campe | 99.91 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 99.91 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 99.91 | |
| d1jdfa1 | 309 | D-glucarate dehydratase {Escherichia coli [TaxId: | 99.89 | |
| d1jpdx1 | 208 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 99.87 | |
| d2gl5a2 | 122 | Putative dehydratase protein STM2273 {Salmonella t | 99.86 | |
| d1jpma2 | 125 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 99.86 | |
| d2chra2 | 126 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 99.84 | |
| d1rvka2 | 126 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 99.84 | |
| d1nu5a2 | 126 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 99.84 | |
| d2gdqa2 | 115 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 99.82 | |
| d1wufa2 | 126 | N-acylamino acid racemase {Listeria innocua [TaxId | 99.82 | |
| d1r6wa1 | 221 | O-succinylbenzoate synthase {Escherichia coli [Tax | 99.81 | |
| d1wuea2 | 126 | N-acylamino acid racemase {Enterococcus faecalis [ | 99.78 | |
| d1muca2 | 127 | Muconate-lactonizing enzyme (cis muconate cycloiso | 99.76 | |
| d1jdfa2 | 133 | D-glucarate dehydratase {Escherichia coli [TaxId: | 99.76 | |
| d1sjda2 | 125 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 99.75 | |
| d2mnra2 | 130 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 99.74 | |
| d1yeya2 | 139 | RTS beta protein {Xanthomonas campestris pv. campe | 99.74 | |
| d1bqga2 | 132 | D-glucarate dehydratase {Pseudomonas putida [TaxId | 99.73 | |
| d1tzza2 | 140 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 99.72 | |
| d1r0ma2 | 127 | N-acylamino acid racemase {Deinococcus radiodurans | 99.72 | |
| d1jpdx2 | 116 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 99.48 | |
| d1r6wa2 | 101 | O-succinylbenzoate synthase {Escherichia coli [Tax | 98.26 | |
| d1kkoa2 | 160 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 97.92 | |
| d1kcza2 | 160 | beta-Methylaspartase {Clostridium tetanomorphum [T | 97.83 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 92.62 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 82.62 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 81.39 |
| >d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Probab=100.00 E-value=3e-64 Score=482.29 Aligned_cols=290 Identities=74% Similarity=1.192 Sum_probs=275.2
Q ss_pred ceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHH
Q 043137 149 LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKE 228 (445)
Q Consensus 149 ~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~ 228 (445)
..+|+|++++++||+|+++++++||||++|.++.+++++++++.++|+++|+.|+.|.|...+.++|+|+|.|++++.++
T Consensus 3 ~~lP~P~~NiinGG~HA~~~ldiQEFmIiP~ga~sf~eal~~~~eV~~~lk~~L~~k~~~~~~~vgDEGgfaP~~~~~e~ 82 (294)
T d2akza1 3 LILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSE 82 (294)
T ss_dssp CCBCEEEEEEEECGGGSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGCBCTTSCBCCSCCCHHH
T ss_pred cCCCccceeeecCcccCCCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCceeeeccchHH
Confidence 36899999999999999999999999999999999999999999999999999998888778899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCC
Q 043137 229 GLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDD 308 (445)
Q Consensus 229 ~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D 308 (445)
.|+.+.+|+..+|++++|.|++||+|+++|+++ +|.+++..+ ++.++.+|++|++++|.+++++||+.+|||||+.+|
T Consensus 83 ~l~ll~~Ai~~ag~~~~i~ialD~AASefy~~~-kY~~~~~~~-~~~~~~~t~delid~y~~l~~kYPIisIEDP~~E~D 160 (294)
T d2akza1 83 ALELVKEAIDKAGYTEKIVIGMDVAASEFYRDG-KYDLDFKSP-TDPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQDD 160 (294)
T ss_dssp HHHHHHHHHHHHTCTTTCEEEEECCGGGGEETT-EECTTTTSS-CCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSCTTC
T ss_pred HHHHHHHHHhccCCCceEEEEechhhhhhhhcC-cceeeeccc-CCccceecHHHHHHHHHHHhcccCeEEEeCCCcccc
Confidence 999999999999997799999999999999988 677665432 123457899999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~ 388 (445)
+++|++|+++++ +.|+||++++|++.++++.++.++++.+.||++|+|++||+++.+++|+++|+.++++|+++||+|
T Consensus 161 ~~gw~~lt~~lg--~~ivGDDl~vTn~~rl~kgi~~~aanailIK~NQiGTltEt~ea~~la~~~g~~~ivShRsGETeD 238 (294)
T d2akza1 161 WAAWSKFTANVG--IQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETED 238 (294)
T ss_dssp HHHHHHHHHTCS--SEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSC
T ss_pred hhhHHHHHHhcC--cEEEccccccccHHHHHHHHhcCcCccceeccccchhHHHHHHHHHHHHHcCCcEEeeCCCCCcCc
Confidence 999999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCccccCCCCCchhHHHHHHHHHHHHHhCccccccccccCCCC
Q 043137 389 TFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFRAPV 442 (445)
Q Consensus 389 ~~~~~la~a~~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~~~~~~ 442 (445)
++++|||||++++|+|.|+|+|+||++||||||||||+|++++.|+|.+|++|-
T Consensus 239 ~~iaDLAVg~~a~~iK~G~~~r~ER~aKyNrLlrIee~L~~~~~~~g~~~~~~~ 292 (294)
T d2akza1 239 TFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEELGDEARFAGHNFRNPS 292 (294)
T ss_dssp CHHHHHHHHHTCSEEECCCSCSHHHHHHHHHHHHHHHHHGGGCCBCGGGTTCGG
T ss_pred chHhHHHHhcCCCeeeeCCCcchHHHHHHHHHHHHHHHhccccEeCCccCCCCC
Confidence 999999999999999999999999999999999999999999999999999994
|
| >d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.2e-64 Score=481.75 Aligned_cols=290 Identities=63% Similarity=0.998 Sum_probs=277.4
Q ss_pred ceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHH
Q 043137 149 LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKE 228 (445)
Q Consensus 149 ~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~ 228 (445)
..+|+|++++++||+|+++++++||||++|.++.+++++++++.++|+++|+.++.|+|.....++|+|+|.|++++.++
T Consensus 3 ~~lP~P~~NIinGG~HA~~~ldiQEfmIiP~ga~sf~eal~~~~eVy~~lk~il~~k~~~~~~~vgDEGgfaP~~~~~e~ 82 (295)
T d2al1a1 3 YVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFAEALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEE 82 (295)
T ss_dssp EEECEEEEEEEECGGGSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGSBCTTSCBCCCCSCHHH
T ss_pred CCCCchheeeecCcccCCCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhcCccccCcccCccccccCccccHH
Confidence 57999999999999999999999999999999999999999999999999999999988877889999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCC
Q 043137 229 GLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDD 308 (445)
Q Consensus 229 ~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D 308 (445)
.|+.+.+|+..+||++++.|++||+|+++|+++ +|++++..+....++.+|++|++++|.+++++|||.+|||||+.+|
T Consensus 83 aL~ll~~Ai~~aGy~~~i~i~lD~AAsefy~~~-kY~~~~~~~~~~~~~~~s~~elid~y~~li~~YPIisIEDp~~e~D 161 (295)
T d2al1a1 83 ALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDG-KYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFAEDD 161 (295)
T ss_dssp HHHHHHHHHHHHTCTTTCEEEEECCGGGGEETT-EECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSCTTC
T ss_pred HHHHHHHHHHhcCCCcceEEEeehhhHHHhhCC-cccccccccccCCccccchHHHHHHHHHHHHhCCEEEecCCcCccc
Confidence 999999999999997789999999999999888 7888776555555677999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~ 388 (445)
+++|++|+++++ +.|+||++++|++.++++.++.++++.+.||++|+|++||+++++++|+++|+.++++|+++||+|
T Consensus 162 ~~gw~~lt~~~g--~~iVGDDl~~Tn~~rl~~~i~~~~~nailiK~NQiGTvtEt~ea~~la~~~g~~~ivShRSGETeD 239 (295)
T d2al1a1 162 WEAWSHFFKTAG--IQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESIKAAQDSFAAGWGVMVSHRSGETED 239 (295)
T ss_dssp HHHHHHHHTTCC--SEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSC
T ss_pred hHHHHHHhhccC--ceeecchhhcccchhhhcchhhhcccceeecccchhhHHHHHHHHHHHHhcCCeeecccCCCCcCc
Confidence 999999999988 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCccccCCCCCchhHHHHHHHHHHHHHhCccccccccccCCC
Q 043137 389 TFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFRAP 441 (445)
Q Consensus 389 ~~~~~la~a~~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~~~~~ 441 (445)
++++|||||++++|+|.|+|+|+||++||||||||||+|+++++|+|.+|++-
T Consensus 240 ~~iaDLAVg~~a~~iK~G~~~R~ER~aKyNrLLrIee~L~~~a~~~g~~~~~~ 292 (295)
T d2al1a1 240 TFIADLVVGLRTGQIKTGAPARSERLAKLNQLLRIEEELGDNAVFAGENFHHG 292 (295)
T ss_dssp CHHHHHHHHTTCSEEECCCSCSHHHHHHHHHHHHHHHHHGGGEEECGGGCTTG
T ss_pred chhhhhhHhcCCCeeeeCCCcchhHHHHHHHHHHHHHHhccccEECcccccCc
Confidence 99999999999999999999999999999999999999999999999999873
|
| >d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=2.8e-63 Score=475.46 Aligned_cols=288 Identities=59% Similarity=0.944 Sum_probs=274.1
Q ss_pred ceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHH
Q 043137 149 LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKE 228 (445)
Q Consensus 149 ~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~ 228 (445)
.++|+|++++++||+|+++++++||||++|.++.+++++++++.++|+.+|+.|+.|++.....++++|||.|++++.++
T Consensus 3 ~~lP~P~~NIinGG~HA~~~ldiQEFmIiP~g~~sf~eal~~~~eV~~~lk~~L~~k~~~~~~~vgDEGGfaP~~~~~e~ 82 (291)
T d2ptza1 3 LRLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINE 82 (291)
T ss_dssp CEECEEEEEEEECSTTSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGCCBCTTSSBCCSCCCTTT
T ss_pred CCCCcceeeEecccccCCCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccHH
Confidence 57999999999999999999999999999999999999999999999999999998888777889999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEeccccccccCCc-eeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcC
Q 043137 229 GLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDK-TYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQD 307 (445)
Q Consensus 229 ~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~-~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~ 307 (445)
.|+.+.+|+..+||++++.|++|++|+++|++++ .|++++.. ..+..+|++|++++|.+++++|||.+|||||+.+
T Consensus 83 aL~ll~eAi~~ag~~~~~~i~lD~AAsef~~~~~~~Y~l~~~~---~~~~~ls~~elid~y~~l~~~YPIisIEDp~~e~ 159 (291)
T d2ptza1 83 PLPILMEAIEEAGHRGKFAICMDCAASETYDEKKQQYNLTFKS---PEPTWVTAEQLRETYCKWAHDYPIVSIEDPYDQD 159 (291)
T ss_dssp HHHHHHHHHHHTTCTTSCEEEEECCGGGGEETTTTEEETTTTS---SSCCEECHHHHHHHHHHHHHHSCEEEEECCSCTT
T ss_pred HHHHHHHHHHHcCCCCCeeEEeeechHhhhhcccccccccccc---cCcchhhHHHHHHHHHHHhhccceeEecCCcccc
Confidence 9999999999999988999999999999998776 78875421 1245689999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCCh
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETE 387 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~ 387 (445)
|+++|++|+++++.++.|+||++++|++.++++.++.++++.+.||++|+|++||+++.+++|+++|+.++++|++|||+
T Consensus 160 D~~gw~~lt~~~g~k~~iVGDDL~vTn~~rl~~gi~~~a~NaiLIK~NQiGTvtEt~ea~~la~~~g~~~iiShRSGETe 239 (291)
T d2ptza1 160 DFAGFAGITEALKGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKINQIGTISEAIASSKLCMENGWSVMVSHRSGETE 239 (291)
T ss_dssp CHHHHHHHHHHTTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCS
T ss_pred chhHHHHhhhccCceEEEecCcccccchHHHhhccccCCccceEecchhhhhHHHHHHHHHHHHHcCeeEEeeCCCCCcC
Confidence 99999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCccccCCCCCchhHHHHHHHHHHHHHhCccccccccccC
Q 043137 388 DTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFR 439 (445)
Q Consensus 388 ~~~~~~la~a~~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~~~ 439 (445)
|++++|||||++++|+|.|+|+|+||++||||||||||+|++++.|+++.|+
T Consensus 240 D~~iaDLAVg~~a~~iK~G~~~r~ER~aKyNrLLrIee~L~~~~~~~~~~~~ 291 (291)
T d2ptza1 240 DTYIADLVVALGSGQIKTGAPCRGERTAKLNQLLRIEEELGAHAKFGFPGWS 291 (291)
T ss_dssp CCHHHHHHHHHTCSEEECCSSCSHHHHHHHHHHHHHHHHHCTTCEESCGGGC
T ss_pred cchHHHHHHHhCCCceecCCCcchHHHHHHHHHHHHHHHhccccCcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999985
|
| >d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=1.1e-62 Score=471.35 Aligned_cols=289 Identities=48% Similarity=0.844 Sum_probs=265.9
Q ss_pred ceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHH
Q 043137 149 LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKE 228 (445)
Q Consensus 149 ~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~ 228 (445)
..+|+|++++++||+|+++++++||||++|.++.+++++++++.++|+++|+.|+.+.+ .+.++|+|||.|++++.++
T Consensus 3 ~~lP~P~~NiinGG~HA~~~l~~QEfmIiP~~~~sf~eal~~~~eV~~~lk~~l~~~~~--~t~vgDEGGfaP~~~~~e~ 80 (296)
T d1w6ta1 3 KVLPTPMMNIINGGSHSDAPIAFQEFMILPVGAPTFKEALRYGAEIFHALKKILKSRGL--ETAVGDEGGFAPRFEGTED 80 (296)
T ss_dssp CEECEECEEEEECGGGCSSSCCCSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTC--CCCBCTTSCBCCCCSSHHH
T ss_pred CcCCcchhheecCcccCCCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhCCC--CCcccccccccccCcChHH
Confidence 36999999999999999999999999999999999999999999999999999987633 5689999999999999999
Q ss_pred HHHHHHHHHHHhCCC-C-CeEEEEeccccccccCCc-eeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCC
Q 043137 229 GLELLNTAIAKAGYT-G-KVVIGMDVAASEFYGSDK-TYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFD 305 (445)
Q Consensus 229 ~l~~l~~av~~~g~~-~-~i~l~vD~~a~~~~~~~~-~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~ 305 (445)
.|+.+.+||+++||+ + |+.|++||+|+++|++++ .|... ......+..+|++|++++|.+++++|||.+|||||+
T Consensus 81 aL~ll~eAI~~aGy~~G~di~ialD~AAsefy~~~~~~Y~~~--~~e~~~~~~~s~~elid~y~~l~~~YPIisIEDP~~ 158 (296)
T d1w6ta1 81 GVETILAAIEAAGYVPGKDVFLGFDCASSEFYDKERKVYDYT--KFEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGMD 158 (296)
T ss_dssp HHHHHHHHHHHTTCCBTTTBEEEEECCGGGGBC--CCCEETH--HHHCTTCCEECHHHHHHHHHHHHHHSCEEEEESCSC
T ss_pred HHHHHHHHHHHcCCCCCCceeeehhhhhhhhhcCCCceeeec--cccCCcccccCHHHHHHHHHHHHhcCCeEEEecCcc
Confidence 999999999999998 4 899999999999998774 44321 100112345799999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCC
Q 043137 306 QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGE 385 (445)
Q Consensus 306 ~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~e 385 (445)
.+|+++|++|+++++++|.|+||++++|++..+++.++.++++.+.||++|+|++||+++++++|+++|+.++++|+++|
T Consensus 159 e~D~~gw~~lt~~lg~~~~iVGDDL~vTn~~~l~~gI~~~~~nailiK~NQiGTvtet~e~~~~a~~~g~~~ivShRSGE 238 (296)
T d1w6ta1 159 ENDWDGWKALTERLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTETFEAIEMAKEAGYTAVVSHRSGE 238 (296)
T ss_dssp TTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSSC
T ss_pred cccHHHHHHHHHHhCCceEEEcCcccccChhHHHhhhhhcccccceeccchhHHHHHHHHHHHHHHHCCceEEeecCCCC
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHhhhcCCccccCCCCCchhHHHHHHHHHHHHHhCccccccc-cccCCC
Q 043137 386 TEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAG-AKFRAP 441 (445)
Q Consensus 386 t~~~~~~~la~a~~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~-~~~~~~ 441 (445)
|+|++++|||||++++|+|.|+|+|+||++||||||||||+|++++.|.| .+|++-
T Consensus 239 TeD~~iadLAVg~~a~~iK~G~~~R~ER~aKyNrLLrIee~L~~~~~~~g~~~f~~~ 295 (296)
T d1w6ta1 239 TEDSTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGEVAEYRGLKSFYNL 295 (296)
T ss_dssp CSCCHHHHHHHHTTCCEEECCCSSSHHHHHHHHHHHHHHHHHGGGCEECGGGGCTTC
T ss_pred CccchhHHHHHHcCCCeeecCCCcchhHHHHHHHHHHHHHHhcccceeCchHhhccC
Confidence 99999999999999999999999999999999999999999999999999 468863
|
| >d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.3e-62 Score=463.72 Aligned_cols=285 Identities=51% Similarity=0.833 Sum_probs=267.4
Q ss_pred ceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHH
Q 043137 149 LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKE 228 (445)
Q Consensus 149 ~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~ 228 (445)
..+|+|++++++||+|+++++++||||++|.++.+++++++++.++|+++|+.|+.|.. .+.++|+|+|.|++++.++
T Consensus 4 ~~lP~P~~NIinGG~HA~~~l~~QEfmIiP~ga~sf~eal~~~~evy~~lk~iL~~k~~--~t~vgDEGGfap~~~~~ee 81 (292)
T d2fyma1 4 YSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGM--NTAVGDEGGYAPNLGSNAE 81 (292)
T ss_dssp CCCCEECEEEEECGGGSSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTC--CCCBCTTSCBCCCCSSHHH
T ss_pred cCCCcceeeeecCcccCCCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhcCC--CCcccCccceecccCccHH
Confidence 47999999999999999999999999999999999999999999999999999998743 4679999999999999999
Q ss_pred HHHHHHHHHHHhCCC-C-CeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCc
Q 043137 229 GLELLNTAIAKAGYT-G-KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQ 306 (445)
Q Consensus 229 ~l~~l~~av~~~g~~-~-~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~ 306 (445)
.|+.+.+|++.+||+ + |+.|.+|++|+++|+++ +|.+.+. .+..+|++|++++|.+++++|||.+|||||+.
T Consensus 82 aL~ll~eAi~~aGy~~G~di~ialD~AAsefy~~~-~y~~~~~-----~~~~~t~~eli~~y~~l~~~yPIisIEDP~~e 155 (292)
T d2fyma1 82 ALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDG-KYVLAGE-----GNKAFTSEEFTHFLEELTKQYPIVSIEDGLDE 155 (292)
T ss_dssp HHHHHHHHHHHTTCCBTTTBEEEEECCGGGGEETT-EEEEGGG-----TTEEECHHHHHHHHHHHHHHSCEEEEESCSCT
T ss_pred HHHHHHHHHHHcCCCCCceEEEeeeechhhhhccc-cceeccC-----CCccccHHHHHHHHHHHHhcCceEEEeCCccc
Confidence 999999999999998 4 89999999999999888 5655432 13457999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCC
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGET 386 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et 386 (445)
+|+++|++|++++++++.|+||++++|++..+++.++.++++.+.||++|+|++|++++.+++|+++|+.++++|+++||
T Consensus 156 dD~~gw~~lt~~~g~~~~ivGDDL~~Tn~~rl~~gi~~~~~nailiK~NQiGTvTet~ea~~la~~~g~~~ivShRSGET 235 (292)
T d2fyma1 156 SDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGET 235 (292)
T ss_dssp TCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECGGGTCSHHHHHHHHHHHHHTTCEEEEECCSSCC
T ss_pred ccHHHHHHHHHhcCCcEEEeCCchhccChHHHHhhhhcCCccceeechhhhhHHHHHHHHHHHHHHcCCeEeecCCCCCc
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhcCCccccCCCCCchhHHHHHHHHHHHHHhCccccccccccCCC
Q 043137 387 EDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFRAP 441 (445)
Q Consensus 387 ~~~~~~~la~a~~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~~~~~ 441 (445)
+|++++|||||++++|+|.|+|+|+||++||||||||||+|++++.|.|+.+..|
T Consensus 236 eD~~iaDLAVg~ga~~iK~G~~~R~ER~aKyNrLLrIee~L~~~a~~~g~~~~~~ 290 (292)
T d2fyma1 236 EDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKG 290 (292)
T ss_dssp SCCHHHHHHHHTTCEEEECCCSCSHHHHHHHHHHHHHHHHHGGGSCCCGGGGSTT
T ss_pred ccchHHHHHHHhCCCeeecCCCcccchhHHHHHHHHHHHHhccccccCChHHhcc
Confidence 9999999999999999999999999999999999999999999999999665443
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=100.00 E-value=1.3e-34 Score=273.03 Aligned_cols=191 Identities=19% Similarity=0.280 Sum_probs=165.4
Q ss_pred CCccChHHHHHHHHHHHHHhCCC-C-CeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhc---cC
Q 043137 221 PNIQENKEGLELLNTAIAKAGYT-G-KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFIS---DY 295 (445)
Q Consensus 221 ~~~~~~~~~l~~l~~av~~~g~~-~-~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~---~~ 295 (445)
++.+++.+.++++.++|+++++. + ++.|++|++.... .|+.||++|+++++.++.+ +|
T Consensus 46 ~~~~~~~e~~~~i~~rI~~~r~~~g~~~~l~iD~~~~~~-----------------~n~~~~~~eai~~~~~L~~~~~~y 108 (253)
T d1kcza1 46 LKGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDVYGTIG-----------------AAFDVDIKAMADYIQTLAEAAKPF 108 (253)
T ss_dssp TTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHHH-----------------HHTTTCHHHHHHHHHHHHHHHTTS
T ss_pred CCccccHHHHHHHHHHHHHHhcccccCceeeehhhhccC-----------------ccCCCCHHHHHHHHHHHHHhcCCC
Confidence 45566788889888989887765 3 8999999953221 2578999999998766543 46
Q ss_pred CeeeEECCCCcCC----HHHHHHHHHHh---CCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHH
Q 043137 296 PIVSIEDPFDQDD----WEHYAKLTSEV---GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVR 368 (445)
Q Consensus 296 ~i~~iEdP~~~~D----~~~~~~L~~~~---~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~ 368 (445)
++ |||||++.+| +++|++|++++ +.++||++||+ ++++++++++++.+++|+++||++|+|||++++++++
T Consensus 109 ~i-~iEqP~~~~d~~~~~e~~a~lr~~~~~~g~~vpI~~DE~-~~~~~d~~~~i~~~a~d~v~iK~~k~GGi~~al~~~~ 186 (253)
T d1kcza1 109 HL-RIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEW-CNTVEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIM 186 (253)
T ss_dssp CE-EEECSBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTT-CCSHHHHHHHHHTTCSSEEEECTGGGSSTHHHHHHHH
T ss_pred Cc-eEecCCCCccHhhHHHHHHHHHHHHhccCCccceecccc-ccCHHHHHHHHHhCCcCeeeccccccCCHHHHHHHHH
Confidence 66 9999999988 67889999875 23599999997 5789999999999999999999999999999999999
Q ss_pred HHHHcCCcEEecCCCCCChhhH--HHHHHhhhcCCcc--ccCCCCCchhHHHHHHHHHHHHHhCcc
Q 043137 369 MSKQAGWGVMASHRSGETEDTF--IADLSVGLATGQI--KTGAPCRSERLAKYNQLLRIEEELGAE 430 (445)
Q Consensus 369 ~A~~~g~~~~~~~~~~et~~~~--~~~la~a~~~~~~--~~G~~~~~e~~~k~n~ll~i~~~l~~~ 430 (445)
+|+++|+++++||+++||++++ ++|||+|+++.++ |+|.++++++++|||||+||++.|+.+
T Consensus 187 ~a~~~Gi~~~vg~~~~Et~~s~~a~~hla~A~~~~~~~~kpg~~~~~~~~~~~n~~~r~~~~~~~~ 252 (253)
T d1kcza1 187 YCKANGMGAYCGGTCNETNRSAEVTTNIGMACGARQVLAKPGMGVDEGMMIVKNEMNRVLALVGRR 252 (253)
T ss_dssp HHHHTTCEEEECCCTTSCHHHHHHHHHHHHHHTCSEEECCSSSSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCcEEEcCccCCcchHHHHHHHHHHhcCcchhhcCCCCCcccchhHHHHHHHHHHHHhccC
Confidence 9999999999999999999874 7899999999999 899999999999999999999998754
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=100.00 E-value=8.9e-35 Score=273.39 Aligned_cols=184 Identities=18% Similarity=0.225 Sum_probs=156.9
Q ss_pred hHHHHHHHHHHHHHhCCC--CCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhc---cCCeeeE
Q 043137 226 NKEGLELLNTAIAKAGYT--GKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFIS---DYPIVSI 300 (445)
Q Consensus 226 ~~~~l~~l~~av~~~g~~--~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~---~~~i~~i 300 (445)
..+.++.+.++|+.+++. +++.|++|++.... .|+.|+.+++++++.++.+ +|++ ||
T Consensus 51 ~~e~~~~~~~rI~~~r~~~G~~~~i~iD~~~~~~-----------------~~~~~~~~~ai~~l~~L~~~~~~~~l-~I 112 (251)
T d1kkoa1 51 LREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIG-----------------LIFDMDPVRCAEYIASLEKEAQGLPL-YI 112 (251)
T ss_dssp HHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHHH-----------------HHTTTCHHHHHHHHHHTGGGGTTSCE-EE
T ss_pred cHHHHHHHHHHHHHHHhCcCCCcceeeccccccc-----------------cccCCCHHHHHHHHHHHHHhcCCCce-ee
Confidence 456677777777766544 38999999953221 2467899999999877654 3454 99
Q ss_pred ECCCC----cCCHHHHHHHHHHh---CCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHc
Q 043137 301 EDPFD----QDDWEHYAKLTSEV---GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQA 373 (445)
Q Consensus 301 EdP~~----~~D~~~~~~L~~~~---~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~ 373 (445)
|||++ ++|+++|++|++++ +.++||++||++ .++++++++++.+++|++|||++|+||||++++++++|+++
T Consensus 113 EqP~~~~~~~~d~~gl~~l~~~l~~~g~~vpI~~DE~~-~t~~d~~~~i~~~a~d~v~iK~~k~GGi~~a~~~~~~A~~~ 191 (251)
T d1kkoa1 113 EGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWC-NTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKH 191 (251)
T ss_dssp ECCCCCSSHHHHHHHHHHHHHHHHHHTCCCEEEECTTC-CSHHHHHHHHHTTCCSEEEECGGGGSSTHHHHHHHHHHHHH
T ss_pred cCCcccccchHHHHHHHHHHHHHhccCCCceEecccee-CCHHHHHHHHHhCCccceeccccccCCHHHHHHHHHHHHHC
Confidence 99996 46899999999886 345999999985 56999999999999999999999999999999999999999
Q ss_pred CCcEEecCCCCCChhhH--HHHHHhhhcCCcc--ccCCCCCchhHHHHHHHHHHHHHhC
Q 043137 374 GWGVMASHRSGETEDTF--IADLSVGLATGQI--KTGAPCRSERLAKYNQLLRIEEELG 428 (445)
Q Consensus 374 g~~~~~~~~~~et~~~~--~~~la~a~~~~~~--~~G~~~~~e~~~k~n~ll~i~~~l~ 428 (445)
|+++++||+++||++++ ++|||+|+++.++ |+|...++++++|||||+||+++|.
T Consensus 192 Gi~~~~g~~~~ET~~~~~a~~hla~a~~~~~~~~kpg~g~d~~~~~~~ne~~r~~~~~~ 250 (251)
T d1kkoa1 192 GMEAYQGGTCNETEISARTCVHVALAARPMRMLIKPGMGFDEGLNIVFNEMNRTIALLQ 250 (251)
T ss_dssp TCEEEECCCTTSCHHHHHHHHHHHHHHCCSEEECCSCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEeCcccCcchHHHHHHHHHHhcCCcccccCCCCCCCcchHHHHHHHHHHHHHhc
Confidence 99999999999999875 6799999999998 8999999999999999999999873
|
| >d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.97 E-value=2.8e-31 Score=224.15 Aligned_cols=134 Identities=57% Similarity=0.798 Sum_probs=126.8
Q ss_pred CceEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhh
Q 043137 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPAL 79 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~L 79 (445)
|+ +|++|++|+|+||+|+|||+|+|+|++|.+|++++|+|+|||.+|+.++||+++. |.|+++..++..+++.|.|.|
T Consensus 1 M~-~I~~v~~r~IlDSRG~PTvevev~~~~g~~gra~~PSGAStG~~Ea~elrD~~~~~~~Gkgv~~Av~~in~~i~~~L 79 (137)
T d1w6ta2 1 MS-IITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLGTQKAVDNVNNIIAEAI 79 (137)
T ss_dssp TT-BEEEEEEEEEECTTSCEEEEEEEEETTCCEEEEECCCC---CCSSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHH
T ss_pred CC-ceeEEEEEEEEcCCCCEEEEEEEEECCCccceeecCcCCCcccccceeccCCccccccCCcHHHHHHHHHHHhHHHH
Confidence 66 8999999999999999999999999999999999999999999999999998766 999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhc
Q 043137 80 AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIA 141 (445)
Q Consensus 80 iG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG 141 (445)
+|+|+.||+.||+.|. .++++.+ .+.+|.|++.|+|+|++.+.|+..++|||+|||
T Consensus 80 ~G~d~~dq~~iD~~li-elDgT~n-----ks~lGaNailAvSlA~akAaA~~~~~pLy~yig 135 (137)
T d1w6ta2 80 IGYDVRDQQAIDRAMI-ALDGTPN-----KGKLGANAILGVSIAVARAAADYLEIPLYSYLG 135 (137)
T ss_dssp TTSBTTCHHHHHHHHH-HHHCSTT-----CTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred cCCccccHHHHHHHHH-HhcCccc-----ccccchhHHHHHHHHHHHHHHHHcCCcHHHhhc
Confidence 9999999999999999 9999998 689999999999999999999999999999999
|
| >d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=9.7e-30 Score=216.15 Aligned_cols=136 Identities=61% Similarity=0.866 Sum_probs=130.7
Q ss_pred EEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhhcCC
Q 043137 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGK 82 (445)
Q Consensus 4 kI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~LiG~ 82 (445)
||++|++|+|+||+|+|||+|+|+|++|.+|++++|+|.+||.+|+.+++|+++. |.|+++..++..+++.|+|.|+|+
T Consensus 2 kI~~v~~r~IlDSRG~PTvevev~~~~g~~g~a~~PsGaStG~~Ea~elrD~~~~~~~Gkgv~~av~~in~~i~~~Lig~ 81 (139)
T d2fyma2 2 KIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGK 81 (139)
T ss_dssp BEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCCCCSSCSSSCCCCCCCCTTSGGGTCCHHHHHHHHTHHHHHHTTS
T ss_pred eeEEEEEEEEEcCCCCeEEEEEEEECCCCEeEEECCcccCccccccccccCCChhhhcccccchhhHHHHHHHHHHHhCC
Confidence 8999999999999999999999999999999999999999999999999998766 999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccC
Q 043137 83 DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSG 145 (445)
Q Consensus 83 d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G 145 (445)
++.||+.||+.|. .++++.| .+.+|.|++.|+|+|++.+.|+..++|||++|+++.|
T Consensus 82 ~~~dq~~iD~~li-~lDgT~n-----ks~lGaNailAvS~A~akAaA~~~~~pLy~yi~~~~g 138 (139)
T d2fyma2 82 DAKDQAGIDKIMI-DLDGTEN-----KSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNG 138 (139)
T ss_dssp BTTCHHHHHHHHH-HHHCSTT-----CTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTT
T ss_pred chhhhHHHHHHHH-hccCCcc-----ccccchHHHHHHHHHHHHHHHHHcCCCHHHHhHhhcC
Confidence 9999999999999 9999988 6889999999999999999999999999999996555
|
| >d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.96 E-value=6.9e-30 Score=217.07 Aligned_cols=136 Identities=60% Similarity=0.923 Sum_probs=129.7
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhhcC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAG 81 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~LiG 81 (445)
|||++|++|+|+||+|+|||+|+|+|++|+ +++++|+|+|||.+|+.++||+++. |.|+++..++..+++.|.|.|+|
T Consensus 2 M~I~~i~~r~IlDSRG~PTvevev~~~~g~-~ra~~PsGaStG~~Ea~elrd~~~~~~~Gkgv~~Av~nin~~I~~~L~g 80 (139)
T d2ptza2 2 MTIQKVHGREVLDSRGNPTVEVEVTTEKGV-FRSAVPSGASTGVYEACELRDGDKKRYVGKGCLQAVKNVNEVIGPALIG 80 (139)
T ss_dssp TSCCEEEEEEEECTTSCEEEEEEEEETTEE-EEEECCBCSSCCTTSCCCCCCCCTTTGGGTCCHHHHHHHHHTHHHHHTT
T ss_pred CeEEEEEEEEEEcCCCCeEEEEEEEECCCc-eeEeccccccccchhhhhcCCCcccccccchHHHHHHHhhhccchhhcc
Confidence 899999999999999999999999999996 4789999999999999999998877 99999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccC
Q 043137 82 KDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSG 145 (445)
Q Consensus 82 ~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G 145 (445)
+|+.||+.||+.|. .++++.+ .+.+|.|++.|+|+|++.+.|+..++|||++|+.++|
T Consensus 81 ~~~~dQ~~iD~~li-~lDgt~n-----ks~lGaNailAvS~A~akA~A~~~~~pLy~yi~~~~g 138 (139)
T d2ptza2 81 RDELKQEELDTLML-RLDGTPN-----KGKLGANAILGCSMAISKAAAAAKGVPLYRYLASLAG 138 (139)
T ss_dssp CCTTCHHHHHHHHH-HHHCSTT-----CTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cchhhHHHHHHHHH-HHhCCcc-----hhhhhhHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcC
Confidence 99999999999999 9999988 6889999999999999999999999999999996665
|
| >d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4.5e-28 Score=206.31 Aligned_cols=134 Identities=58% Similarity=0.915 Sum_probs=127.0
Q ss_pred EEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhhc--C
Q 043137 5 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALA--G 81 (445)
Q Consensus 5 I~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~Li--G 81 (445)
|++|++|+|+||+|+|||+|+|+|++| +|++++|+|+|||.+|+.++||+++. |.|+++..++..+++.|.|.|+ |
T Consensus 2 I~~v~ar~IlDSRG~PTvev~v~~~~g-~~ra~~PSGaStG~~EA~elrD~~~~~~~gkgV~~av~nin~~i~~~Li~~g 80 (141)
T d2al1a2 2 VSKVYARSVYDSRGNPTVEVELTTEKG-VFRSIVPSGASTGVHEALEMRDGDKSKWMGKGVLHAVKNVNDVIAPAFVKAN 80 (141)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHT
T ss_pred cCEEEEEEEECCCCCcEEEEEEEECCC-eEEEeeccCCCCCcceeeeecCCCccccccccchhHHHHHHHHhHHHHhhcC
Confidence 889999999999999999999999999 58999999999999999999998865 8899999999999999999999 8
Q ss_pred CCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccC
Q 043137 82 KDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSG 145 (445)
Q Consensus 82 ~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G 145 (445)
.++.||+.||+.|. .++++.| .+.+|.|++.|+|+|++.+.|+..++|||++|+++.+
T Consensus 81 ~~~~dq~~iD~~li-~lDgT~n-----ks~lGaNailAvS~A~akAaA~~~~~pLy~yl~~~~~ 138 (141)
T d2al1a2 81 IDVKDQKAVDDFLI-SLDGTAN-----KSKLGANAILGVSLAASRAAAAEKNVPLYKHLADLSK 138 (141)
T ss_dssp CCTTCHHHHHHHHH-HHHCSTT-----STTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CchhhHHHHHHHHH-HccCCcc-----hhhhhhHHHHHHHHHHHHHHHHHcCCCHHHHHHhhhc
Confidence 89999999999999 9999988 6889999999999999999999999999999995554
|
| >d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Probab=99.95 E-value=1.3e-27 Score=203.14 Aligned_cols=135 Identities=66% Similarity=0.990 Sum_probs=127.6
Q ss_pred EEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhhc--
Q 043137 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALA-- 80 (445)
Q Consensus 4 kI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~Li-- 80 (445)
+|++|++|+|+||+|+|||+|+|+|++|+ |++++|+|.|||.+|+.+++|+++. |.|+++..++..+++.|.|.|+
T Consensus 1 tI~~i~~r~IlDSRG~PTvevev~~~~g~-~~a~~PsGaStG~~Ea~elrd~~~~~~~gkgV~~Av~~i~~~i~~~Li~~ 79 (139)
T d2akza2 1 SIEKIWAREILDSRGNPTVEVDLYTAKGL-FRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHINSTIAPALISS 79 (139)
T ss_dssp CCCEEEEEEEECTTSCEEEEEEEEETTEE-EEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHH
T ss_pred CcCEEEEEEEEcCCCCeEEEEEEEECCCe-EEEecccccccchhhhhhccccccccccCCchhhHHHhhHHHHHHHHHhc
Confidence 48999999999999999999999999994 8999999999999999999998766 9999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccC
Q 043137 81 GKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSG 145 (445)
Q Consensus 81 G~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G 145 (445)
|+++.+|+.||+.|. .++++.+ .+.+|.+++.|+|+|++.+.|+..++|||+||+++.|
T Consensus 80 g~~~~dQ~~iD~~L~-~lDgt~n-----ks~lGaNailAvSlA~akA~A~~~~~pLy~yi~~l~g 138 (139)
T d2akza2 80 GLSVVEQEKLDNLML-ELDGTEN-----KSKFGANAILGVSLAVCKAGAAERELPLYRHIAQLAG 138 (139)
T ss_dssp CCCTTCHHHHHHHHH-HHHCSTT-----CTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHH-HccCccc-----hhhcChHHHHHHHHHHHHHHHHHcCCcHHHHhHhhhC
Confidence 999999999999999 8999988 6889999999999999999999999999999996554
|
| >d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus vulgaris) [TaxId: 6707]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: European lobster (Homarus vulgaris) [TaxId: 6707]
Probab=99.95 E-value=1.8e-27 Score=200.88 Aligned_cols=131 Identities=64% Similarity=0.913 Sum_probs=124.8
Q ss_pred EEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhhc--
Q 043137 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALA-- 80 (445)
Q Consensus 4 kI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~Li-- 80 (445)
+|++|++|+|+||+|+|||+|+|+|++| +|++++|+|+|||.+|+.++||+++. |.|+++..++..+++.+.|.|+
T Consensus 1 tI~~i~ar~IlDSRG~PTVev~v~~~~~-~~ra~~PSGAStG~~EA~elrD~~~~~~~Gkgv~~Av~nin~~i~~~Li~~ 79 (139)
T d1pdza2 1 SITKVFARTIFDSRGNPTVEVDLYTSKG-LFRAAVPSGASTGVHEALEMRDGDKSKYHGKSVFNAVKNVNDVIVPEIIKS 79 (139)
T ss_dssp CCCEEEEEEEECTTSCEEEEEEEEETTE-EEEEECCCCBSSCSSSCBCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHH
T ss_pred CccEEEEEEEEcCCCCcEEEEEEEECCC-eEEEecccCcCCcchhheecccCCccccccccccceeecchhhhhHHHHhc
Confidence 4899999999999999999999999988 58999999999999999999998765 9999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhc
Q 043137 81 GKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIA 141 (445)
Q Consensus 81 G~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG 141 (445)
|.++.+|+.||+.|. .++++.+ ++.+|.|++.|+|+|++.+.|+..++|||++|+
T Consensus 80 g~~~~dq~~iD~~Li-~lDgT~n-----ks~lGaNailAvS~A~akAaA~~~~~pLy~yi~ 134 (139)
T d1pdza2 80 GLKVTQQKECDEFMC-KLDGTEN-----KSSLGANAILGVSLAICKAGAAELGIPLYRHIA 134 (139)
T ss_dssp TCCTTCHHHHHHHHH-HHHCSSS-----STTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CccccchhhhHHHHH-hhcCccc-----hhhhhhHHHHHHHHHHHHHHHHHcCCcHHHHhh
Confidence 689999999999999 9999988 688999999999999999999999999999998
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=99.94 E-value=1.1e-27 Score=225.56 Aligned_cols=148 Identities=15% Similarity=0.233 Sum_probs=124.2
Q ss_pred cChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECC
Q 043137 224 QENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDP 303 (445)
Q Consensus 224 ~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP 303 (445)
+.|.++++.+|+++ | +++.|++|+ |+.||.+++++++ +.++++++.|||||
T Consensus 46 ~~D~~~v~~ir~~~---g--~~~~l~vDa-----------------------N~~~~~~~A~~~~-~~l~~~~i~~iEeP 96 (244)
T d2chra1 46 QDDLIHMEALSNSL---G--SKAYLRVDV-----------------------NQAWDEQVASVYI-PELEALGVELIEQP 96 (244)
T ss_dssp HHHHHHHHHHHHHT---T--TTSEEEEEC-----------------------TTCCCTHHHHHHH-HHHHTTTCCEEECC
T ss_pred HHHHHHHHHHHHhc---C--CCceEEEeC-----------------------CCCcchHHHHHHH-HHHhhhhHHHHhhh
Confidence 33455555554444 5 589999999 3678889999885 56899999999999
Q ss_pred CCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCC
Q 043137 304 FDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRS 383 (445)
Q Consensus 304 ~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~ 383 (445)
++++|++++++|+++++ +||++||+. +++++++++++.+++|++|+|++++||+|++++++++|+++|++++++| .
T Consensus 97 ~~~~d~~~~~~l~~~~~--ipia~~E~~-~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i~~~a~~~gi~~~~~~-~ 172 (244)
T d2chra1 97 VGRENTQALRRLSDNNR--VAIMADESL-STLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGT-M 172 (244)
T ss_dssp SCSSCHHHHHHHHHHCS--SEEEESSSC-CSHHHHHHHHTTTCCSEECCCHHHHTSHHHHHHHHHHHHHHTCEECCCC-C
T ss_pred hhhccchhhhhhcccee--eeeeecccc-cccchhhhhhhcceeEEEeeccccccchHHHHHHHHHHHHcCCCeeecc-c
Confidence 99999999999999998 999999985 6799999999999999999999999999999999999999999987766 5
Q ss_pred CCChhhHHHHHHhhhcCCccc
Q 043137 384 GETEDTFIADLSVGLATGQIK 404 (445)
Q Consensus 384 ~et~~~~~~~la~a~~~~~~~ 404 (445)
.++.++.+++++++...+.+.
T Consensus 173 ~~~~i~~~a~~hl~a~~~~~~ 193 (244)
T d2chra1 173 LDSTIGTSVALQLYSTVPSLP 193 (244)
T ss_dssp SCCHHHHHHHHHHHTTSSCCT
T ss_pred cccccchhHHHHHHHhCCCCc
Confidence 688777766666665555443
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=99.94 E-value=4.4e-27 Score=221.38 Aligned_cols=147 Identities=16% Similarity=0.272 Sum_probs=123.3
Q ss_pred cChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECC
Q 043137 224 QENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDP 303 (445)
Q Consensus 224 ~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP 303 (445)
+.+.++++.+|+++ | +++.|++|+ |+.||.+++++++ +.++++++.|||||
T Consensus 46 ~~Di~~v~~ir~~~---g--~~~~l~vDa-----------------------N~~~~~~~A~~~~-~~l~~~~~~~iEeP 96 (243)
T d1nu5a1 46 AQDLEHIRSIVKAV---G--DRASVRVDV-----------------------NQGWDEQTASIWI-PRLEEAGVELVEQP 96 (243)
T ss_dssp HHHHHHHHHHHHHH---G--GGCEEEEEC-----------------------TTCCCHHHHHHHH-HHHHHHTCCEEECC
T ss_pred HHHHHHHHHHHHHh---C--cccceEEEC-----------------------CCCccchhHHHHH-HHhcchhhhhhhhh
Confidence 34455666665555 5 579999999 3678999999885 56789999999999
Q ss_pred CCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCC
Q 043137 304 FDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRS 383 (445)
Q Consensus 304 ~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~ 383 (445)
++++|++++++|+++++ +||++||+. .++++++++++.+++|++++|++++||+|++++++++|+++|++++++| .
T Consensus 97 ~~~~~~~~~~~l~~~~~--ipIa~gE~~-~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~i~~~a~~~gi~~~~~~-~ 172 (243)
T d1nu5a1 97 VPRANFGALRRLTEQNG--VAILADESL-SSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGT-M 172 (243)
T ss_dssp SCTTCHHHHHHHHHHCS--SEEEESTTC-CSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECC-S
T ss_pred hhhccccccccchhccc--ccccccccc-ccchhhhhccccccccccccccccccchHHHHHHHHHHHHcCCCccccc-c
Confidence 99999999999999998 999999984 6799999999999999999999999999999999999999999987776 4
Q ss_pred CCChhhHHHHHHhhhcCCcc
Q 043137 384 GETEDTFIADLSVGLATGQI 403 (445)
Q Consensus 384 ~et~~~~~~~la~a~~~~~~ 403 (445)
.++.++.++.++++...+.+
T Consensus 173 ~~s~i~~~a~~h~~aa~p~~ 192 (243)
T d1nu5a1 173 LDSTVGTAAALHVYATLPSL 192 (243)
T ss_dssp SCCHHHHHHHHHHHTTSSCC
T ss_pred cchhhhHHHHHHHHHhCCCC
Confidence 57777665555555444443
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=99.94 E-value=6.3e-27 Score=220.18 Aligned_cols=146 Identities=15% Similarity=0.200 Sum_probs=121.6
Q ss_pred cChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECC
Q 043137 224 QENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDP 303 (445)
Q Consensus 224 ~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP 303 (445)
+.+.++++.+|+++ | +++.|++|+ |+.||.+++++++ +.++++++.|||||
T Consensus 46 ~~Di~~i~~ir~~~---g--~~~~l~vDa-----------------------N~~~~~~~A~~~~-~~l~~~~i~~iEeP 96 (242)
T d1muca1 46 EQDLKHVVTIKREL---G--DSASVRVDV-----------------------NQYWDESQAIRAC-QVLGDNGIDLIEQP 96 (242)
T ss_dssp HHHHHHHHHHHHHH---G--GGSEEEEEC-----------------------TTCBCHHHHHHHH-HHHHHTTCCCEECC
T ss_pred HHHHHHHHHHHHHh---C--CCCEEEEec-----------------------CCCCcHHHHHHHH-HHhhhhhHHHhhcc
Confidence 44455666555555 5 589999999 3678999999985 56789999999999
Q ss_pred CCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCC
Q 043137 304 FDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRS 383 (445)
Q Consensus 304 ~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~ 383 (445)
++++|++++++|+++++ +||++||+. .+++++.++++.+++|++|+|++++||||++++++++|+++|++++++| .
T Consensus 97 ~~~~d~~~~~~L~~~~~--~pIa~~E~~-~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~i~~~A~~~gi~~~~~~-~ 172 (242)
T d1muca1 97 ISRINRGGQVRLNQRTP--APIMADESI-ESVEDAFSLAADGAASIFALKIAKNGGPRAVLRTAQIAEAAGIGLYGGT-M 172 (242)
T ss_dssp BCTTCHHHHHHHHHHCS--SCEEESTTC-SSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECC-S
T ss_pred hhhhhhhhhhhhhhhhh--heeeccccc-ccccchhhhhhcccccccccccccchhHHHHHHHHHHHHhCCCCccccc-c
Confidence 99999999999999998 999999985 5699999999999999999999999999999999999999999987655 4
Q ss_pred CCChhhHHHHHHhhhcCCc
Q 043137 384 GETEDTFIADLSVGLATGQ 402 (445)
Q Consensus 384 ~et~~~~~~~la~a~~~~~ 402 (445)
.++.++.++.++++...+.
T Consensus 173 ~~~~i~~~a~~h~~~~~~~ 191 (242)
T d1muca1 173 LEGSIGTLASAHAFLTLRQ 191 (242)
T ss_dssp SCCHHHHHHHHHHHTTCSC
T ss_pred cccccchhhhhhHHhhccc
Confidence 6776665554444444433
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.93 E-value=4.9e-26 Score=215.62 Aligned_cols=143 Identities=16% Similarity=0.271 Sum_probs=118.8
Q ss_pred CCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeE
Q 043137 221 PNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300 (445)
Q Consensus 221 ~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~i 300 (445)
++++.+.++++++|+++ | +++.|++|+ |+.||.++++++ .+.++++++.||
T Consensus 55 ~~~~~d~~~v~avR~~~---G--~~~~l~vDa-----------------------N~~~~~~~A~~~-~~~l~~~~l~~i 105 (255)
T d1rvka1 55 PDVKMDLKACAAVREAV---G--PDIRLMIDA-----------------------FHWYSRTDALAL-GRGLEKLGFDWI 105 (255)
T ss_dssp CCHHHHHHHHHHHHHHH---C--TTSEEEEEC-----------------------CTTCCHHHHHHH-HHHHHTTTCSEE
T ss_pred cCHHHHHHHHHHHHHHc---C--Cccceeccc-----------------------ccccccchhhhh-hhhcccchhhhh
Confidence 34555566666665555 6 689999999 367899999998 556899999999
Q ss_pred ECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEec
Q 043137 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMAS 380 (445)
Q Consensus 301 EdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~ 380 (445)
|||++++|++++++|+++++ +||++||+..+..++++++++.+++|++|+|++++||||++++++++|+++|++++++
T Consensus 106 EeP~~~~d~~~~~~l~~~~~--~pI~~~E~~~~~~~~~~~~i~~~~~dii~~d~~~~GGit~~~~i~~~a~~~gi~v~~h 183 (255)
T d1rvka1 106 EEPMDEQSLSSYKWLSDNLD--IPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVGGITPALKTMHLAEAFGMECEVH 183 (255)
T ss_dssp ECCSCTTCHHHHHHHHHHCS--SCEEECSSCSSHHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEEEC
T ss_pred cCCcccccHHHHHHHHHhcc--cceeehhhcccchhhhhhhhhhchhhhccccccccccchHHHHHHHHHHHhccceecc
Confidence 99999999999999999999 9999999865433567899999999999999999999999999999999999998654
Q ss_pred CCCCCChhhHHHHHHhhhc
Q 043137 381 HRSGETEDTFIADLSVGLA 399 (445)
Q Consensus 381 ~~~~et~~~~~~~la~a~~ 399 (445)
+ +. +..+|+++++.
T Consensus 184 ~-~~----~~~~hl~a~~~ 197 (255)
T d1rvka1 184 G-NT----AMNLHVVAATK 197 (255)
T ss_dssp C-CS----HHHHHHHHHCS
T ss_pred c-cc----hhHHHHHHHhh
Confidence 4 32 34577777664
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=99.93 E-value=3.4e-26 Score=219.34 Aligned_cols=138 Identities=12% Similarity=0.162 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCc
Q 043137 227 KEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQ 306 (445)
Q Consensus 227 ~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~ 306 (445)
.++++++|+++ | +++.||+|+| +.||.++++++ .+.++++++.|||||+++
T Consensus 81 i~~v~aiRe~v---G--~~~~l~vDan-----------------------~~~~~~~Ai~~-~~~L~~~~l~wiEePi~~ 131 (278)
T d2gl5a1 81 EARIAAMREAM---G--DDADIIVEIH-----------------------SLLGTNSAIQF-AKAIEKYRIFLYEEPIHP 131 (278)
T ss_dssp HHHHHHHHHHH---C--SSSEEEEECT-----------------------TCSCHHHHHHH-HHHHGGGCEEEEECSSCS
T ss_pred HHHHHHHHHHh---c--cccceeeccc-----------------------ccccchhhHHH-HHHhcccccceecccccc
Confidence 44455455444 6 6899999993 67889999987 567899999999999999
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCC
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGET 386 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et 386 (445)
+|++++++|+++++ +||+++|+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++ .|+ .++
T Consensus 132 ~d~~~~~~L~~~~~--ipIa~gE~~-~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~kia~la~~~gi~v~-~H~-~~~ 206 (278)
T d2gl5a1 132 LNSDNMQKVSRSTT--IPIATGERS-YTRWGYRELLEKQSIAVAQPDLCLCGGITEGKKICDYANIYDTTVQ-VHV-CGG 206 (278)
T ss_dssp SCHHHHHHHHHHCS--SCEEECTTC-CTTHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEEC-CCC-CSS
T ss_pred cchhhhhhhccccc--cceeccccc-CChHHHhhhhccccceeEeeccccccchhhHHHhhhhhhhhccccc-ccc-ccC
Confidence 99999999999998 999999985 5689999999999999999999999999999999999999999974 574 456
Q ss_pred hhhHHH--HHHhhh
Q 043137 387 EDTFIA--DLSVGL 398 (445)
Q Consensus 387 ~~~~~~--~la~a~ 398 (445)
.++.++ ||+.++
T Consensus 207 ~i~~~a~~hl~aa~ 220 (278)
T d2gl5a1 207 PVSTVAALHMETAI 220 (278)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred chhhhhhhhhhhcc
Confidence 666555 555544
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=99.93 E-value=2e-26 Score=218.52 Aligned_cols=143 Identities=16% Similarity=0.268 Sum_probs=117.7
Q ss_pred ccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccC-CeeeEE
Q 043137 223 IQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDY-PIVSIE 301 (445)
Q Consensus 223 ~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~-~i~~iE 301 (445)
++.+.++++++|+++ | +++.|++|+ |+.|+.+++++++ +.++++ ++.|||
T Consensus 49 ~~~di~~v~avr~~~---G--~~~~l~vDa-----------------------n~~~~~~~A~~~~-~~l~~~~~i~~~E 99 (256)
T d2gdqa1 49 FKEDVRHINALQHTA---G--SSITMILDA-----------------------NQSYDAAAAFKWE-RYFSEWTNIGWLE 99 (256)
T ss_dssp HHHHHHHHHHHHHHH---C--TTSEEEEEC-----------------------TTCCCHHHHHTTH-HHHTTCSCEEEEE
T ss_pred HHHHHHHHHHHHHHc---C--CCeEEeecc-----------------------ccCCCHHHHHHHH-HHHhhcCceeEec
Confidence 344455565555554 6 689999999 3678899999874 567786 699999
Q ss_pred CCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecC
Q 043137 302 DPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASH 381 (445)
Q Consensus 302 dP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~ 381 (445)
||++++|++++++|+++++ +||++||.. .++++++++++.+++|++|+|++++||||++++++++|+++|+++ ++|
T Consensus 100 eP~~~~d~~~~~~l~~~~~--ipIa~gE~~-~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~i~~~a~~~~i~v-~~h 175 (256)
T d2gdqa1 100 EPLPFDQPQDYAMLRSRLS--VPVAGGENM-KGPAQYVPLLSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFGVRA-SAH 175 (256)
T ss_dssp CCSCSSCHHHHHHHHTTCS--SCEEECTTC-CSHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHHTCEE-CCC
T ss_pred cccccchHHHHHHHhhccc--ceeecCccc-cchhhHHHHHHhhcceeeeccccccccHHHHHHHHHHHhhhcccc-ccc
Confidence 9999999999999999998 999999985 679999999999999999999999999999999999999999997 567
Q ss_pred CCCCChhhH--HHHHHhhhc
Q 043137 382 RSGETEDTF--IADLSVGLA 399 (445)
Q Consensus 382 ~~~et~~~~--~~~la~a~~ 399 (445)
+ .++..++ .+|+++++.
T Consensus 176 ~-~~~~i~~~a~~~~~~~~~ 194 (256)
T d2gdqa1 176 A-YDGSLSRLYALFAQACLP 194 (256)
T ss_dssp C-SSCSHHHHHHHHHHHTSC
T ss_pred c-cccccchHHHHHHHHhCc
Confidence 4 3444554 455555543
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=99.93 E-value=7.3e-26 Score=213.06 Aligned_cols=145 Identities=18% Similarity=0.240 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCC
Q 043137 226 NKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFD 305 (445)
Q Consensus 226 ~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~ 305 (445)
|.++++.+|+++ +++.|++|+| +.||.++++ ++. .++++++.|||||++
T Consensus 44 D~~~v~~ir~~~------~~~~l~vDaN-----------------------~~~~~~~a~-~~~-~l~~~~~~wiEeP~~ 92 (244)
T d1wufa1 44 DIQFVEAVRKSF------PKLSLMADAN-----------------------SAYNREDFL-LLK-ELDQYDLEMIEQPFG 92 (244)
T ss_dssp SHHHHHHHHTTC------TTSEEEEECT-----------------------TCCCGGGHH-HHH-TTGGGTCSEEECCSC
T ss_pred HHHHHHHHHHhc------cchhhhhhhh-----------------------ccccchhhh-hhh-cccccchhhhcCccc
Confidence 456665554432 5799999993 567888887 444 588999999999999
Q ss_pred cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCC
Q 043137 306 QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGE 385 (445)
Q Consensus 306 ~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~e 385 (445)
++|++++++|+++++ +||++||+. ++++++.++++.+++|++|+|++++||+|++++++++|+++|+++++++ ..+
T Consensus 93 ~~d~~~~~~l~~~~~--~pia~dE~~-~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~ki~~~a~~~gi~v~~h~-~~~ 168 (244)
T d1wufa1 93 TKDFVDHAWLQKQLK--TRICLDENI-RSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVWCGG-MLE 168 (244)
T ss_dssp SSCSHHHHHHHTTCS--SEEEECTTC-CSHHHHHHHHHHTCCSEEEECTGGGTSHHHHHHHHHHHHHTTCEEEECC-CCC
T ss_pred ccchhhhhccccccc--cccccCccc-cchhhhhhhccccccceeecccccccchhhHHHHHHHHHHcCCEEecCC-CCC
Confidence 999999999999998 999999984 6799999999999999999999999999999999999999999986654 678
Q ss_pred ChhhHHHHHHhhhcCCcccc
Q 043137 386 TEDTFIADLSVGLATGQIKT 405 (445)
Q Consensus 386 t~~~~~~~la~a~~~~~~~~ 405 (445)
+..+.+++++++...+++..
T Consensus 169 ~~i~~~~~~~~~~~~~~~~~ 188 (244)
T d1wufa1 169 AGVGRAHNIALAARNEFVFP 188 (244)
T ss_dssp CHHHHHHHHHHHTSSSCCSC
T ss_pred ccHHHHHHHHHHhccCccch
Confidence 88887787777766665543
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=99.92 E-value=2.8e-25 Score=208.70 Aligned_cols=140 Identities=17% Similarity=0.226 Sum_probs=120.3
Q ss_pred ChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCC
Q 043137 225 ENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPF 304 (445)
Q Consensus 225 ~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~ 304 (445)
.|.++++.+|+++ | +++.|++|+| +.||.++++++ .+ ++++++.|||||+
T Consensus 43 ~Di~~i~~ir~~~---g--~~~~l~vDaN-----------------------~~~~~~~a~~~-~~-l~~~~~~~iEeP~ 92 (242)
T d1sjda1 43 WDVEPVRAVRERF---G--DDVLLQVDAN-----------------------TAYTLGDAPQL-AR-LDPFGLLLIEQPL 92 (242)
T ss_dssp BSHHHHHHHHHHH---C--TTSEEEEECT-----------------------TCCCGGGHHHH-HT-TGGGCCSEEECCS
T ss_pred hHHHHHHHHHHHh---C--CCeeEeeccc-----------------------cccchhhhhHH-hh-hhhhhhHHHHhhh
Confidence 3577888777776 5 5899999993 56788899975 66 7889999999999
Q ss_pred CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCC
Q 043137 305 DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSG 384 (445)
Q Consensus 305 ~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~ 384 (445)
+++|++++++|+++++ +||++||+. .+++++.++++.+++|++|+|++++||+|++++++++|+++|+++++++ ..
T Consensus 93 ~~~d~~~~~~l~~~~~--~pia~gE~~-~~~~~~~~~~~~~~~d~~~~d~~~~GGit~~~~i~~~A~~~~i~~~~h~-~~ 168 (242)
T d1sjda1 93 EEEDVLGHAELARRIQ--TPICLDESI-VSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGG-MI 168 (242)
T ss_dssp CTTCHHHHHHHHTTCS--SCEEESTTC-CSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECC-CC
T ss_pred hhhhHHHHHHHHhccC--ccccccccc-ccchhhhhhhhcCccCEEEeccccCccchhhhHHHHHHHHCCCEEeecc-cc
Confidence 9999999999999998 999999985 6699999999999999999999999999999999999999999986654 56
Q ss_pred CChhhHHHHHHhhh
Q 043137 385 ETEDTFIADLSVGL 398 (445)
Q Consensus 385 et~~~~~~~la~a~ 398 (445)
++..+.++.++++.
T Consensus 169 ~~~i~~~a~~~~a~ 182 (242)
T d1sjda1 169 ETGLGRAANVALAS 182 (242)
T ss_dssp CCHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHhh
Confidence 77666555555443
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=3e-25 Score=207.44 Aligned_cols=143 Identities=17% Similarity=0.270 Sum_probs=119.5
Q ss_pred ccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhcc--CCeeeE
Q 043137 223 IQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISD--YPIVSI 300 (445)
Q Consensus 223 ~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~--~~i~~i 300 (445)
++.+.++++.+|+++ | +++.|++|+| +.||.+++++++ +.+++ +++.||
T Consensus 43 ~~~d~~~i~~ir~~~---g--~~~~i~vD~N-----------------------~~~~~~~a~~~~-~~le~~~~~i~~~ 93 (234)
T d1jpma1 43 IATDIARIQEIRKRV---G--SAVKLRLDAN-----------------------QGWRPKEAVTAI-RKMEDAGLGIELV 93 (234)
T ss_dssp HHHHHHHHHHHHHHH---G--GGSEEEEECT-----------------------TCSCHHHHHHHH-HHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHc---C--chhhhhhhcc-----------------------cccchHHHHHHH-HHHHhccCceeee
Confidence 444556666666655 5 5899999993 678899999985 45665 678999
Q ss_pred ECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEec
Q 043137 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMAS 380 (445)
Q Consensus 301 EdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~ 380 (445)
|||++++|++++++|+++++ +||+.||+. +++.++.++++.+++|++++|++++||+|++++++++|+++|++++++
T Consensus 94 EeP~~~~d~~~~~~l~~~~~--~pia~gE~~-~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i~~~a~~~g~~~~~~ 170 (234)
T d1jpma1 94 EQPVHKDDLAGLKKVTDATD--TPIMADESV-FTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVG 170 (234)
T ss_dssp ECCSCTTCHHHHHHHHHHCS--SCEEESTTC-SSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEEEC
T ss_pred cCCccccCHHHHHHhhcccc--ceeeccccc-ccchhhhhhhccCCcCeEEEeeecCCCHHHHHHHHHHHHhcCeeEeec
Confidence 99999999999999999998 999999985 679999999999999999999999999999999999999999999777
Q ss_pred CCCCCChhhHH--HHHHhhh
Q 043137 381 HRSGETEDTFI--ADLSVGL 398 (445)
Q Consensus 381 ~~~~et~~~~~--~~la~a~ 398 (445)
| ..++.++.+ +|++.+.
T Consensus 171 ~-~~~~~i~~~a~~~~aa~~ 189 (234)
T d1jpma1 171 S-MIETKLGITAAAHFAASK 189 (234)
T ss_dssp C-SSCCHHHHHHHHHHHHHC
T ss_pred c-cccCCchHHHHHHHHHhc
Confidence 6 467766544 4555443
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.92 E-value=2.3e-25 Score=209.17 Aligned_cols=142 Identities=19% Similarity=0.289 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCC
Q 043137 226 NKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFD 305 (445)
Q Consensus 226 ~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~ 305 (445)
|.++++.+|+++ +++.|++|+| +.|+.++++++ .+ ++++++.|||||++
T Consensus 44 D~~~v~~ir~~~------~d~~l~vDaN-----------------------~~~~~~~a~~~-~~-~~~~~i~~iEeP~~ 92 (241)
T d1wuea1 44 DVEPVALIRQHF------PNLPLMVDAN-----------------------SAYTLADLPQL-QR-LDHYQLAMIEQPFA 92 (241)
T ss_dssp SHHHHHHHHHHC------TTSCEEEECT-----------------------TCCCGGGHHHH-HG-GGGSCCSCEECCSC
T ss_pred HHHHHHHHHHhc------cccceeeccc-----------------------ccCCHHHhhhh-hh-hhhhhhhhhcCccc
Confidence 466776665543 5789999993 56788898865 65 57899999999999
Q ss_pred cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCC
Q 043137 306 QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGE 385 (445)
Q Consensus 306 ~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~e 385 (445)
++|++++++|+++++ +||++||+. +++++++.+++.+++|++|+|++++||+|++++++++|+++|++++++| ..+
T Consensus 93 ~~~~~~~~~l~~~~~--~pIa~gE~~-~~~~~~~~~i~~~~~d~i~~d~~~~GGit~~~~i~~~a~~~~i~v~~~~-~~~ 168 (241)
T d1wuea1 93 ADDFLDHAQLQRELK--TRICLDENI-RSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLVWLGG-MFE 168 (241)
T ss_dssp TTCSHHHHHHHTTCS--SCEEECTTC-CSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECC-CCC
T ss_pred ccchhhhhhhhcccc--cccccCccc-ccchhhhhhhhhhhhhhhccccccccCcHHHHHHHHHHHHcCCEEEecc-ccc
Confidence 999999999999998 999999985 6799999999999999999999999999999999999999999987766 567
Q ss_pred ChhhHHHHHHhhhcCCc
Q 043137 386 TEDTFIADLSVGLATGQ 402 (445)
Q Consensus 386 t~~~~~~~la~a~~~~~ 402 (445)
+..+.+++++++.....
T Consensus 169 ~~i~~~a~~~~a~~~~~ 185 (241)
T d1wuea1 169 SGVGRALNLQFASQPTF 185 (241)
T ss_dssp CHHHHHHHHHHHTSTTC
T ss_pred ccccccchhhhcccccc
Confidence 77776666555544333
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.92 E-value=8.2e-25 Score=205.64 Aligned_cols=141 Identities=16% Similarity=0.206 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCC
Q 043137 226 NKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFD 305 (445)
Q Consensus 226 ~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~ 305 (445)
|.++++.+|+++ +++.|++|+| +.||..+++++ . .++++++.|||||++
T Consensus 44 D~~~v~~ir~~~------~d~~l~vD~n-----------------------~~~~~~~a~~~-~-~l~~~~~~~iEeP~~ 92 (243)
T d1r0ma1 44 DVQPVRATREAF------PDIRLTVDAN-----------------------SAYTLADAGRL-R-QLDEYDLTYIEQPLA 92 (243)
T ss_dssp SHHHHHHHHHHC------TTSCEEEECT-----------------------TCCCGGGHHHH-H-TTGGGCCSCEECCSC
T ss_pred hHHHHHHHHHhc------cCceEEEecc-----------------------ccCchHHHHHh-h-hhhhccchhhhhhcc
Confidence 467777666654 5789999993 57888888864 4 578899999999999
Q ss_pred cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCC
Q 043137 306 QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGE 385 (445)
Q Consensus 306 ~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~e 385 (445)
++|++++++|+++++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++++| ..+
T Consensus 93 ~~d~~~~~~l~~~~~--ipia~gE~~-~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i~~~A~~~gi~v~~h~-~~~ 168 (243)
T d1r0ma1 93 WDDLVDHAELARRIR--TPLCLDESV-ASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCGG-MLE 168 (243)
T ss_dssp TTCSHHHHHHHHHCS--SCEEESTTC-CSHHHHHHHHHHTSCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECC-CCC
T ss_pred ccchHHHHHHhhcCC--cccccccch-hhhhhhhhhhhcccccceecccceeccHHHHHHHHHHHHHCCCceeccc-ccc
Confidence 999999999999998 999999985 6799999999999999999999999999999999999999999987765 456
Q ss_pred ChhhHHHHHHhhhcCC
Q 043137 386 TEDTFIADLSVGLATG 401 (445)
Q Consensus 386 t~~~~~~~la~a~~~~ 401 (445)
+..+.++.++++...+
T Consensus 169 ~~i~~~a~~h~~a~~~ 184 (243)
T d1r0ma1 169 SGIGRAHNIHLSTLSN 184 (243)
T ss_dssp CHHHHHHHHHHTTSTT
T ss_pred cchhhhHHHHHHhhcc
Confidence 7666555554443333
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=99.91 E-value=1.2e-24 Score=205.53 Aligned_cols=142 Identities=18% Similarity=0.289 Sum_probs=118.0
Q ss_pred ccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEEC
Q 043137 223 IQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIED 302 (445)
Q Consensus 223 ~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEd 302 (445)
++.+.++++.+|+++ | +++.|++|+ |+.||.++|+++ .+.++++++.||||
T Consensus 42 ~~~di~~v~~vr~~~---g--~~~~l~vDa-----------------------N~~~~~~~A~~~-~~~l~~~~~~~iEe 92 (252)
T d1yeya1 42 VQDDIRRCRLARAAI---G--PDIAMAVDA-----------------------NQRWDVGPAIDW-MRQLAEFDIAWIEE 92 (252)
T ss_dssp HHHHHHHHHHHHHHH---C--SSSEEEEEC-----------------------TTCCCHHHHHHH-HHTTGGGCCSCEEC
T ss_pred HHHHHHHHHHHHHHh---C--CCceEeecc-----------------------ccCcchHHHHHH-HHhhhhcCceeecC
Confidence 344556666555554 6 689999999 367899999998 45689999999999
Q ss_pred CCCcCCHHHHHHHHHH-hCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecC
Q 043137 303 PFDQDDWEHYAKLTSE-VGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASH 381 (445)
Q Consensus 303 P~~~~D~~~~~~L~~~-~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~ 381 (445)
|++++|.+++++++++ ++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|+++ ..|
T Consensus 93 P~~~~d~~~~~~~~~~~~~--ipia~gE~~-~~~~~~~~~i~~~a~d~~~~d~~~~GGit~~~kia~~A~~~~i~v-~~h 168 (252)
T d1yeya1 93 PTSPDDVLGHAAIRQGITP--VPVSTGEHT-QNRVVFKQLLQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRV-FPH 168 (252)
T ss_dssp CSCTTCHHHHHHHHHHSTT--SCEECCTTC-CSHHHHHHHHHHTCCSEECCCTTTSSHHHHHHHHHHHHHHHTCEE-CCC
T ss_pred CcchhhHHHHHHHhhccCC--Cceeccccc-cchhhhhhHhhccccceeccccccccCchhhhHHHHHHHHcCCEE-ecC
Confidence 9999999999999888 46 999999985 679999999999999999999999999999999999999999997 566
Q ss_pred CCCCChhhHHHHHHhh
Q 043137 382 RSGETEDTFIADLSVG 397 (445)
Q Consensus 382 ~~~et~~~~~~~la~a 397 (445)
+..+...+.+++++.+
T Consensus 169 ~~~~~~~~~~~~~~~~ 184 (252)
T d1yeya1 169 AGGVGLCELVQHLAMA 184 (252)
T ss_dssp CCTTTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH
Confidence 5555555544544443
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=99.91 E-value=1.1e-24 Score=202.66 Aligned_cols=140 Identities=22% Similarity=0.267 Sum_probs=118.5
Q ss_pred cChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECC
Q 043137 224 QENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDP 303 (445)
Q Consensus 224 ~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP 303 (445)
+.+.++++.+|+++ | +++.|++|+ |+.||.++++++ .+.++++++.|||||
T Consensus 41 ~~di~~i~~ir~~~---g--~~~~l~vDa-----------------------N~~~~~~~A~~~-~~~l~~~~~~~iEeP 91 (227)
T d2mnra1 41 DQDLAVVRSIRQAV---G--DDFGIMVDY-----------------------NQSLDVPAAIKR-SQALQQEGVTWIEEP 91 (227)
T ss_dssp HHHHHHHHHHHHHH---C--TTSEEEEEC-----------------------TTCSCHHHHHHH-HHHHHHHTCSEEECC
T ss_pred HHHHHHHHHHHHHh---C--CCcEEEEec-----------------------cccCChHHHHHH-HHHhhhchhhhhcCc
Confidence 34455555555554 6 689999999 367899999998 456899999999999
Q ss_pred CCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCC
Q 043137 304 FDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRS 383 (445)
Q Consensus 304 ~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~ 383 (445)
++++|++++++|+++++ +||++||+. .++.++.++++.+++|++|+|++++||+|++++++++|+++|+++ .+|..
T Consensus 92 ~~~~~~~~~~~l~~~~~--ipia~gE~~-~~~~~~~~~~~~~~~d~~~~d~~~~GGit~~~~i~~~a~~~g~~~-~~h~~ 167 (227)
T d2mnra1 92 TLQHDYEGHQRIQSKLN--VPVQMGENW-LGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPM-SSHLF 167 (227)
T ss_dssp SCTTCHHHHHHHHHTCS--SCEEECTTC-CSHHHHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHHHHHTCCB-CCBSC
T ss_pred ccccchhhhHHHHHHcC--CccccCcee-EeechhhhhHhcCceeeeecccccccchhhHHHHHHHHHHcCCcc-cccch
Confidence 99999999999999998 999999985 679999999999999999999999999999999999999999997 44532
Q ss_pred CCChhhHHHHHHhhhcC
Q 043137 384 GETEDTFIADLSVGLAT 400 (445)
Q Consensus 384 ~et~~~~~~~la~a~~~ 400 (445)
..+.+|++.++..
T Consensus 168 ----~~~~~hl~aa~~~ 180 (227)
T d2mnra1 168 ----QEISAHLLAATPT 180 (227)
T ss_dssp ----HHHHHHHHHTCTT
T ss_pred ----hhhhhhhhhcCCc
Confidence 3456788777643
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.91 E-value=1.4e-24 Score=204.68 Aligned_cols=141 Identities=15% Similarity=0.203 Sum_probs=113.3
Q ss_pred cChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECC
Q 043137 224 QENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDP 303 (445)
Q Consensus 224 ~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP 303 (445)
+.+.++++.+|+++ | +++.|++|+ |+.||.++++++ .+.++++++.|||||
T Consensus 49 ~~di~~v~~vr~~~---g--~~~~l~vDa-----------------------n~~~~~~~Ai~~-~~~l~~~~i~wiEeP 99 (247)
T d1tzza1 49 EEDRMRIEAVLEEI---G--KDAQLAVDA-----------------------NGRFNLETGIAY-AKMLRDYPLFWYEEV 99 (247)
T ss_dssp HHHHHHHHHHHHHH---T--TTCEEEEEC-----------------------TTCCCHHHHHHH-HHHHTTSCCSEEECC
T ss_pred HHHHHHHHHHHHhc---c--CCceEEecc-----------------------cccccchhHHHH-Hhhcchhhhhhhccc
Confidence 33444555444444 5 689999999 367889999998 567899999999999
Q ss_pred CCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCC----CCEEEeccCCcccHHHHHHHHHHHHHcCCcEEe
Q 043137 304 FDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKT----CNALLLKVNQIGSVTESIEAVRMSKQAGWGVMA 379 (445)
Q Consensus 304 ~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a----~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~ 379 (445)
++++|++++++|+++++ +||++||+. .++.+++++++.++ +|++|+|++++||||++++++++|+++|+.+ .
T Consensus 100 ~~~~d~~~~~~l~~~~~--ipia~gE~~-~~~~~~~~~i~~~a~~~~~Di~~~d~~~~GGit~~~~i~~~a~~~g~~~-~ 175 (247)
T d1tzza1 100 GDPLDYALQAALAEFYP--GPMATGENL-FSHQDARNLLRYGGMRPDRDWLQFDCALSYGLCEYQRTLEVLKTHGWSP-S 175 (247)
T ss_dssp SCTTCHHHHHHHTTTCC--SCEEECTTC-CSHHHHHHHHHHSCCCTTTCEECCCTTTTTCHHHHHHHHHHHHHTTCCG-G
T ss_pred cccccchhhhhhhhccc--cccccchhh-hhhHHHHHHHHccCCcCcceeEeeccccccchhHHHHHHHHHHHcCCCe-e
Confidence 99999999999999998 999999985 57999999999876 5999999999999999999999999999996 4
Q ss_pred cCCCCCChhhHHHHHHhhh
Q 043137 380 SHRSGETEDTFIADLSVGL 398 (445)
Q Consensus 380 ~~~~~et~~~~~~~la~a~ 398 (445)
.|..+.. ...+++++.++
T Consensus 176 ~~~~~~~-~~~~~~~~~~~ 193 (247)
T d1tzza1 176 RCIPHGG-HQMSLNIAAGL 193 (247)
T ss_dssp GBCCSCC-BHHHHHHHHHH
T ss_pred ccCCCcH-HHHHHHHHHHh
Confidence 4543332 23344444443
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.2e-23 Score=204.17 Aligned_cols=125 Identities=12% Similarity=0.193 Sum_probs=106.5
Q ss_pred CCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCC----HHHHHHHHHHh
Q 043137 244 GKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDD----WEHYAKLTSEV 319 (445)
Q Consensus 244 ~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D----~~~~~~L~~~~ 319 (445)
+++.|+||+ |+.||.++|+++ .+.++ +++.|||||++++| .+.+++|++++
T Consensus 91 pd~~l~vDa-----------------------N~~~s~~~Ai~~-~~~le-~~l~w~EEPv~~~d~~~~~~~l~~lr~~~ 145 (309)
T d1jdfa1 91 PQARITLDP-----------------------NGAWSLNEAIKI-GKYLK-GSLAYAEDPCGAEQGFSGREVMAEFRRAT 145 (309)
T ss_dssp TTSCEEEEC-----------------------TTBBCHHHHHHH-HHHTT-TTCSCEESCBCCBTTBCHHHHHHHHHHHH
T ss_pred CCCeEEeec-----------------------cCCCCHHHHHHH-HHHHh-hcchhhhhhcccCcchhhHHHHHHhhccc
Confidence 568999999 367899999987 56676 68999999999887 58899999999
Q ss_pred CCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh--HHHHHHhh
Q 043137 320 GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT--FIADLSVG 397 (445)
Q Consensus 320 ~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~--~~~~la~a 397 (445)
+ +||++||+. ++++++.++++.+++|++|+|+ ++||||++++++++|+++|+++++ |...++.++ +++|++++
T Consensus 146 ~--ipIa~gE~~-~~~~~~~~~i~~~a~di~~~d~-~~GGit~~~kia~lA~~~gi~v~~-H~~~~~~i~~aa~~hlaaa 220 (309)
T d1jdfa1 146 G--LPTATNMIA-TDWRQMGHTLSLQSVDIPLADP-HFWTMQGSVRVAQMCHEFGLTWGS-HSDNHFDISLAMFTHVAAA 220 (309)
T ss_dssp C--CCEEESSSS-SSHHHHHHHHHHTCCSEEBCCH-HHHCHHHHHHHHHHHHHHTCCCBC-CCCSCCHHHHHHHHHHHTT
T ss_pred c--cceecCccc-chhhhhhhhhhhccceeeeccc-ccccchHHHHHHHHHHhcCCCccc-cCCCCcHHHHHHHHHHHHh
Confidence 9 999999985 6799999999999999999996 789999999999999999999754 545677665 44566655
Q ss_pred h
Q 043137 398 L 398 (445)
Q Consensus 398 ~ 398 (445)
+
T Consensus 221 ~ 221 (309)
T d1jdfa1 221 A 221 (309)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=2.5e-23 Score=190.79 Aligned_cols=139 Identities=14% Similarity=0.219 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCC
Q 043137 226 NKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFD 305 (445)
Q Consensus 226 ~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~ 305 (445)
+.+.++.+|+++ +++.|++|+| +.||.++++++ .+.++++++.|||||++
T Consensus 44 d~~~i~~ir~~~------~d~~l~vDaN-----------------------~~~s~~~A~~~-~~~l~~~~l~~iEeP~~ 93 (208)
T d1jpdx1 44 ISERMVAIRTAV------PDATLIVDAN-----------------------ESWRAEGLAAR-CQLLADLGVAMLEQPLP 93 (208)
T ss_dssp HHHHHHHHHHHC------TTSEEEEECT-----------------------TCCCSTTHHHH-HHHHHHTTCCEEECCSC
T ss_pred HHHHHHHHHHhc------cccEEEEecc-----------------------cccchhHHHHH-HHHHHhccccccCccCC
Confidence 567777666654 5799999993 56788899988 45689999999999999
Q ss_pred cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCC
Q 043137 306 QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGE 385 (445)
Q Consensus 306 ~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~e 385 (445)
++|.+++++++. . +||+.||.. .++.+++++ .+++|++++|++++||+|++++++++|+++|+++++++ ..+
T Consensus 94 ~~d~~~~~~l~~--~--~pi~~~E~~-~~~~~~~~l--~~~~d~~~~d~~~~GGi~~~~~~a~~a~~~g~~~~~~~-~~~ 165 (208)
T d1jpdx1 94 AQDDAALENFIH--P--LPICADESC-HTRSNLKAL--KGRYEMVNIKLDKTGGLTEALALATEARAQGFSLMLGC-MLC 165 (208)
T ss_dssp TTSCGGGGSSCC--S--SCEEESTTC-SSGGGHHHH--BTTBSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECC-CSC
T ss_pred ccCHHHHHhhhc--c--cceecCCCc-CCHHHHHHH--hhccCEEEeCCcccCCHHHHHHHHHHHHHcCCeeeecC-Cch
Confidence 999999988863 3 899999985 568999887 57899999999999999999999999999999987755 567
Q ss_pred ChhhHHHHHHhhhcCCc
Q 043137 386 TEDTFIADLSVGLATGQ 402 (445)
Q Consensus 386 t~~~~~~~la~a~~~~~ 402 (445)
+..+.++.++++....+
T Consensus 166 ~~i~~~a~~~~a~~~~~ 182 (208)
T d1jpdx1 166 TSRAISAALPLVPQVSF 182 (208)
T ss_dssp CHHHHHHHGGGGGGCSE
T ss_pred hHHHHHHHHHHhccCCC
Confidence 77776666666544444
|
| >d2gl5a2 d.54.1.1 (A:1-122) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=99.86 E-value=7.1e-22 Score=165.66 Aligned_cols=115 Identities=18% Similarity=0.271 Sum_probs=87.5
Q ss_pred eEEEEEEEEEEecCC------CCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHh
Q 043137 3 ITITAVKARQIFDSR------GNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIG 76 (445)
Q Consensus 3 mkI~~v~~~~v~~~~------g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~ 76 (445)
||||+|+++.+..+. ....++|+|+||+|++|||++.... +. ....+..+.+.++
T Consensus 1 MKI~~Ie~~~~~~p~~~~~~~~~~~iiV~i~td~Gi~G~Ge~~~~~------------------~~-~~~~~~~~~~~~~ 61 (122)
T d2gl5a2 1 LKITSIEVFDCELKKRDQTMSSYNPVLIRVNTDSGLSGIGEVGLAY------------------GA-GAKAGVGIIRDLA 61 (122)
T ss_dssp CCEEEEEEEECCGGGTCGGGTTCCCEEEEEEETTSCEEEEEESCSS------------------ST-THHHHHHHHHHHG
T ss_pred CEEeEEEEEEEcCCCCCCccccceeEEEEEEECCCCEEEEeecccc------------------cc-chHHHHHHHHHHH
Confidence 899999998884322 2356999999999999999753211 01 1223345667899
Q ss_pred hhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhc
Q 043137 77 PALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIA 141 (445)
Q Consensus 77 p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG 141 (445)
|.|+|+|+.+++++|+.|++... +..+.+++...|++|||+||||+.||..|+|||+|||
T Consensus 62 ~~lig~~~~~~e~~~~~l~~~~~-----~~~~~~~~~~~a~aaid~AlwDl~~K~~~~PL~~lLG 121 (122)
T d2gl5a2 62 PLIVGEDPLNIEKIWEFFFRKTF-----WGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLG 121 (122)
T ss_dssp GGTTTSCTTCHHHHHHHHHHSSS-----GGGSCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred hhhcccccchhhHHHHHHhhhcc-----cccccCCcccchHHHHHHHHHHHHHHHhCCCHHHHcC
Confidence 99999999999999999873221 1122344556799999999999999999999999999
|
| >d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.86 E-value=9.3e-22 Score=165.55 Aligned_cols=112 Identities=23% Similarity=0.307 Sum_probs=92.6
Q ss_pred eEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+.. +.+ +..++|+|+|++|++|+|++... +.|.+++...+...
T Consensus 1 MkI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~iv~i~t~~G~~G~GE~~~~---------------~~~~~e~~~~~~~~ 65 (125)
T d1jpma2 1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPT---------------LVITGDSMDSIESA 65 (125)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECCB---------------TTTTCBCHHHHHHH
T ss_pred CEEEEEEEEEEEeeccCCeEccCeEEEEEEEEEEEEEECCCCEEEEEeccc---------------ccccccccchhHHH
Confidence 8999999987742 333 35689999999999999965432 12667778888889
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhc
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIA 141 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG 141 (445)
+++.++|.|+|+|+.+.+++++.+.+.+. + ..+|++||||||||+.||.+|+|||+|||
T Consensus 66 i~~~~~p~l~g~~~~~~~~~~~~l~~~~~----------~--~~~a~aaid~AlwDl~~K~~g~pl~~llG 124 (125)
T d1jpma2 66 IHHVLKPALLGKSLAGYEAILHDIQHLLT----------G--NMSAKAAVEMALYDGWAQMCGLPLYQMLG 124 (125)
T ss_dssp HHHTHHHHHTTCBGGGHHHHHHHHHHSSS----------S--CHHHHHHHHHHHHHHHHHHTTSBHHHHTT
T ss_pred HHHHHHhhhcccCcccHHHHHHHhhhhcc----------C--ccHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 99999999999999999999988873221 1 24699999999999999999999999999
|
| >d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=99.84 E-value=4.9e-21 Score=161.35 Aligned_cols=113 Identities=20% Similarity=0.177 Sum_probs=90.8
Q ss_pred eEEEEEEEEEEe--------cCCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIF--------DSRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~--------~~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+. .+.+ +..++|+|+|| |++|||++.... .+.|.+++.+.+...
T Consensus 1 MkI~~ie~~~~~~Pl~~p~~~s~~~~~~~~~v~v~i~~d-G~~G~GE~~~~~-------------~~~~~~~~~~~~~~~ 66 (126)
T d2chra2 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVYSE-GLVGVGEGGSVG-------------GPVWSAECAETIKII 66 (126)
T ss_dssp CCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEBT-TBCCEEECCCST-------------TTTTSSCCHHHHHHH
T ss_pred CEEEEEEEEEEeccccCceEeccceEeeeeEEEEEEEcC-CceEeEeecccC-------------CCccccchHHHHHHH
Confidence 899999998773 2333 35689999986 999999653211 123677788888888
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhc
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIA 141 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG 141 (445)
+++.++|.|+|+|+.+++++++.+.+.+. + ..+|++|||+||||+.||..|+|||+|||
T Consensus 67 l~~~l~p~lig~~~~~~~~~~~~~~~~~~----------~--~~~A~aaid~AlwDl~~K~~~~pl~~llG 125 (126)
T d2chra2 67 VERYLAPHLLGTDAFNVSGALQTMARAVT----------G--NASAKAAVEMALLDLKARALGVSIAELLG 125 (126)
T ss_dssp HHHHTHHHHTTSCTTCHHHHHHHHHTTCS----------S--CHHHHHHHHHHHHHHHHHHTTCCHHHHTT
T ss_pred HHHHhcccccccccccHHHHHHHhhhccc----------c--chHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 99999999999999999999988872221 1 14699999999999999999999999999
|
| >d1rvka2 d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.84 E-value=3.2e-21 Score=162.47 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=85.2
Q ss_pred eEEEEEEEEEEec--------CC--------CCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHH
Q 043137 3 ITITAVKARQIFD--------SR--------GNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSK 66 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~--------g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~ 66 (445)
||||+|+++.+.. +. ....++|+|+||+|++|+|+++.+. +
T Consensus 1 MkIt~v~~~~~~~pl~~~~~~a~~~~~g~~~~~~~v~V~v~td~G~~G~Ge~~~~~----------------~------- 57 (126)
T d1rvka2 1 MIITDVEVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQEGHSFTAPEI----------------V------- 57 (126)
T ss_dssp CBEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTSCEEEEEECGGG----------------G-------
T ss_pred CEEEEEEEEEEEeeCCCccccccccCCCCcceeEEEEEEEEECCCCEEEEEeCCHH----------------H-------
Confidence 8999999988732 11 1245899999999999998754311 1
Q ss_pred HHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhc
Q 043137 67 AVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIA 141 (445)
Q Consensus 67 a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG 141 (445)
..+.+++.++|.|+|+++.+++.+|+.+. ..... +.......|++||||||||+.||.+|+|||+|||
T Consensus 58 ~~~~i~~~l~~~lig~~~~~~~~~~~~~~-~~~~~------~~~~~~~~A~aavdiAlwDl~~K~~g~Pl~~LLG 125 (126)
T d1rvka2 58 RPHVIEKFVKKVLIGEDHRDRERLWQDLA-HWQRG------SAAQLTDRTLAVVDCALWDLAGRSLGQPVYKLIG 125 (126)
T ss_dssp CHHHHHHTHHHHHTTSBTTCHHHHHHHHH-HHHTT------TTTCSCHHHHHHHHHHHHHHHHHHHTCBHHHHHC
T ss_pred HHHHHHHHHHHHHhhcCcchhhhhhhhhc-ccccc------CCcchhhHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 12347788999999999999999999988 33211 1234457899999999999999999999999999
|
| >d1nu5a2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=99.84 E-value=1.5e-20 Score=158.42 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=91.6
Q ss_pred eEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+.. +.+ +..++|+|+|| |++|||++.+.. .+.|++++.+.+...
T Consensus 1 MKI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~i~~d-G~~G~GE~~~~~-------------~~~~~~~~~~~~~~~ 66 (126)
T d1nu5a2 1 MKIEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVKAG-GLVGIGEGGSVG-------------GPTWGSESAETIKVI 66 (126)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEET-TEEEEEEECCST-------------TTTTSSCCHHHHHHH
T ss_pred CEEEEEEEEEEecccCCCeEecceEEEeeeEEEEEEEcC-CeEEEeeccccC-------------CCccccccHHHHHHH
Confidence 8999999987742 322 35689999985 999999654321 123667788888888
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhc
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIA 141 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG 141 (445)
+++.+.|.|+|+|+.+++++++.|.+.+.+ + .+|++|||+||||+.||..|+|||+|||
T Consensus 67 i~~~~~p~l~g~~~~~~~~~~~~~~~~~~~----------~--~~A~aaid~AlwDl~~K~~~~pl~~llG 125 (126)
T d1nu5a2 67 IDNYLAPLLVGKDASNLSQARVLMDRAVTG----------N--LSAKAAIDIALHDLKARALNLSIADLIG 125 (126)
T ss_dssp HHHTHHHHHTTSBTTCHHHHHHHHHHHCSS----------C--HHHHHHHHHHHHHHHHHHTTCBHHHHHT
T ss_pred HHHHhhhhhhhcCcccHHHHHHHhhhhhhc----------c--chHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 999999999999999999999999833321 1 4799999999999999999999999999
|
| >d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=99.82 E-value=3.9e-20 Score=153.25 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=83.3
Q ss_pred eEEEEEEEEEEe--------cCCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIF--------DSRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~--------~~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+.+.+. ++.+ +..++|+|+||+|++|+|++... .......
T Consensus 1 mKI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~v~i~~d~G~~G~Ge~~~~----------------------~~~~~~~ 58 (115)
T d2gdqa2 1 VKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDW----------------------LPALHVG 58 (115)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECSC----------------------HHHHHHH
T ss_pred CEEEEEEEEEEeeecCCceEecCeEEEeeeEEEEEEEECCcceEEEecCCc----------------------hhhhHHH
Confidence 899999998774 2333 35699999999999999975431 1233345
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhc
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIA 141 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG 141 (445)
+.+.++|.|+|+||.+.+.+|+.+. .. ...|++||||||||+.||..|+|||+|||
T Consensus 59 i~~~l~~~l~g~~~~~~~~~~~~~~-~~--------------~~~a~aaid~AlwDl~~K~~~~Pl~~lLG 114 (115)
T d2gdqa2 59 FTKRIIPFLLGKQAGSRLSLVRTIQ-KW--------------HQRAASAVSMALTEIAAKAADCSVCELWG 114 (115)
T ss_dssp HHHTHHHHHTTSBTTCHHHHHHHHH-HH--------------CHHHHHHHHHHHHHHHHHHTTSBHHHHTT
T ss_pred HHHHHhhhhcccChhhHHHHHHHHH-Hh--------------hhHHHHHHHHHHHHHHHHHhCCCHHHHcC
Confidence 7788999999999999999998887 31 14699999999999999999999999999
|
| >d1wufa2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=99.82 E-value=1.3e-20 Score=158.75 Aligned_cols=113 Identities=21% Similarity=0.200 Sum_probs=93.0
Q ss_pred eEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+.. +.+ ++.++|+|+|++|++|+|++...+ .+.|.+++...++..
T Consensus 1 Mki~~i~~~~~~lPl~~p~~~s~~~~~~~~~~iv~i~t~~G~~G~GE~~~~~-------------~~~~~~e~~~~~~~~ 67 (126)
T d1wufa2 1 MYFQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFP-------------LPDYTEETLSSAILI 67 (126)
T ss_dssp EECCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEEEEECCCS-------------STTSSSCCHHHHHHH
T ss_pred CEEEEEEEEEEeccccCCEECcCEEEEEEEEEEEEEEECCCcEEEEEEeecC-------------ccCCChhhhhhhhhe
Confidence 8999999987742 333 356999999999999999653211 123778889999999
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhc
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIA 141 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG 141 (445)
+++.++|.|+|+++.+++.+++.+. .+.++ .+|++||||||||+.||..|+|||+|||
T Consensus 68 l~~~l~p~l~g~~~~~~~~i~~~~~-~~~~~------------~~A~aaid~AlwDl~~K~~~~pl~~lLG 125 (126)
T d1wufa2 68 IKEQLLPLLAQRKIRKPEEIQELFS-WIQGN------------EMAKAAVELAVWDAFAKMEKRSLAKMIG 125 (126)
T ss_dssp HHHTTHHHHHHCEESSTTHHHHHHT-TSCSC------------HHHHHHHHHHHHHHHHHHTTSBHHHHTT
T ss_pred eeecccchhcCCCchhHHHHHHHhh-hccCc------------hHHHHHHHHHHHHHHHHHcCCcHHHHhC
Confidence 9999999999999999999988776 44221 4699999999999999999999999998
|
| >d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=9.4e-21 Score=175.04 Aligned_cols=138 Identities=20% Similarity=0.257 Sum_probs=109.6
Q ss_pred ChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccC---CeeeEE
Q 043137 225 ENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDY---PIVSIE 301 (445)
Q Consensus 225 ~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~---~i~~iE 301 (445)
.|.++++.+|+++ |++.|++|+ |+.||.++++++ .+.++++ .+.|+|
T Consensus 42 ~D~~~i~~vr~~~------pd~~L~vDa-----------------------N~~w~~~~A~~~-~~~l~~~~~~~ie~~E 91 (221)
T d1r6wa1 42 RDGMVVNLLLEAI------PDLHLRLDA-----------------------NRAWTPLKGQQF-AKYVNPDYRDRIAFLE 91 (221)
T ss_dssp HHHHHHHHHHHHC------TTEEEEEEC-----------------------TTCBCHHHHHHH-HHTSCTTTGGGEEEEE
T ss_pred HHHHHHHHHHHHC------CCCeEEEeC-----------------------CCCCCHHHHHHH-HHHHHHhhcCCeeeec
Confidence 3455555555543 589999999 467899999988 4567764 688999
Q ss_pred CCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecC
Q 043137 302 DPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASH 381 (445)
Q Consensus 302 dP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~ 381 (445)
||++ +.+++++++++++ +||++||+. .+.. ...+..+++|++++|++++||||++++++++|+++|+++++++
T Consensus 92 ~P~~--~~~~~~~l~~~~~--ipIa~dEs~-~~~~--~~~~~~~~~d~v~ik~~~~GGit~~~kia~~A~~~gl~~~~~~ 164 (221)
T d1r6wa1 92 EPCK--TRDDSRAFARETG--IAIAWDESL-REPD--FAFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISS 164 (221)
T ss_dssp CCBS--SHHHHHHHHHHHC--CCEEESGGG-GSTT--CCCCCCTTEEEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEBC
T ss_pred chhh--hhhHHHHHhhccc--chhhhcccc-chhH--HHHHHHhcCcEEEecccccccHHHHHHHHHHHHHcCCcEEEcC
Confidence 9986 5679999999999 999999985 3333 3456688999999999999999999999999999999998766
Q ss_pred CCCCChhh--HHHHHHhhhcC
Q 043137 382 RSGETEDT--FIADLSVGLAT 400 (445)
Q Consensus 382 ~~~et~~~--~~~~la~a~~~ 400 (445)
+.|+.++ +++|||.++..
T Consensus 165 -~~es~ig~~a~~hlaa~~~~ 184 (221)
T d1r6wa1 165 -SIESSLGLTQLARIAAWLTP 184 (221)
T ss_dssp -SSCCHHHHHHHHHHHHHHCT
T ss_pred -CcchHHHHHHHHHHHHhCCC
Confidence 4677654 66777776653
|
| >d1wuea2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.78 E-value=7.2e-19 Score=147.46 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=90.9
Q ss_pred eEEEEEEEEEEe--------cCCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIF--------DSRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~--------~~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+. .+.+ +..++|+|+|++|++|+|++..... +.|.+++.......
T Consensus 1 MKI~~ie~~~~~~pl~~p~~~s~~~~~~~~~~~v~i~t~~G~~G~GE~~~~~~-------------~~~~~e~~~~~~~~ 67 (126)
T d1wuea2 1 MNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQ-------------PDYVQETLVTERFI 67 (126)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCSS-------------TTSSSCCHHHHHHH
T ss_pred CEEeEEEEEEEeccccCCEEccCeEEEeeeEEEEEEEECCCcEEEEEEeccCc-------------cccchhhhhhhhhh
Confidence 899999998774 2333 3568999999999999997654221 12556677888888
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhc
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIA 141 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG 141 (445)
+...+.|.++|+++.+.+.+++.+. .+.+ ...|++||||||||+.||..|+|||+|||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~a~aaid~AlwDl~ak~~~~pl~~lLG 125 (126)
T d1wuea2 68 IQQHLIPLLLTEAIEQPQEVSTIFE-EVKG------------HWMGKAALETAIWDLYAKRQQKSLTEFFG 125 (126)
T ss_dssp HHHTHHHHHTTSCCCSTHHHHHHGG-GSCS------------CHHHHHHHHHHHHHHHHHHTTSBGGGGSS
T ss_pred hhccccccccccccccHHHHHHHHh-hccC------------ccHHHHHHHHHHHHHHHHHhCCCHHHHhC
Confidence 8888999999999999999887776 4321 24699999999999999999999999998
|
| >d1muca2 d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (cis muconate cycloisomerase) {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Muconate-lactonizing enzyme (cis muconate cycloisomerase) species: Pseudomonas putida [TaxId: 303]
Probab=99.76 E-value=4.7e-18 Score=142.41 Aligned_cols=113 Identities=18% Similarity=0.101 Sum_probs=87.1
Q ss_pred EEEEEEEEEEecC--------CC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHH
Q 043137 4 TITAVKARQIFDS--------RG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNV 71 (445)
Q Consensus 4 kI~~v~~~~v~~~--------~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i 71 (445)
.|++|+++.+..+ .+ +..++|+|+||+|++|+|++..... +.|..++.......+
T Consensus 2 ~I~~ie~~~~~~Pl~~p~~~s~~~~~~~~~~iV~i~td~G~~G~Ge~~~~~~-------------~~~~~~~~~~~~~~~ 68 (127)
T d1muca2 2 LIERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTIGG-------------LAYGYESPEGIKANI 68 (127)
T ss_dssp BEEEEEEEEEEEEBCC---------CEEEEEEEEEEETTSCEEEEEEECSTT-------------TTTSSCCHHHHHHHH
T ss_pred EEeEEEEEEEeccccCceEccceeEeeeeEEEEEEEeCCCcEEEEEeecccc-------------ccccccchHHHHHHH
Confidence 4889998887432 22 3569999999999999996543211 114455567777778
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhc
Q 043137 72 NAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIA 141 (445)
Q Consensus 72 ~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG 141 (445)
.+.+.|.+.++++.+.+.++..+.+.. .....|++||||||||+.||.+|+|||+|||
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~a~aaid~AlwDl~~K~~g~Pl~~lLG 126 (127)
T d1muca2 69 DAHLAPALIGLAADNINAAMLKLDKLA------------KGNTFAKSGIESALLDAQGKRLGLPVSELLG 126 (127)
T ss_dssp HHTHHHHHTTSBTTCHHHHHHHHHHHC------------SSCHHHHHHHHHHHHHHHHHHHTCBHHHHTT
T ss_pred HhhhcccccccchhhHHHHHHHhhhhc------------ccchHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 888999999999999999988777321 1125799999999999999999999999999
|
| >d1jdfa2 d.54.1.1 (A:5-137) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=2.5e-18 Score=145.87 Aligned_cols=117 Identities=11% Similarity=0.120 Sum_probs=82.8
Q ss_pred Cc-eEEEEEEEEEEecC-------CC-----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHH
Q 043137 1 MA-ITITAVKARQIFDS-------RG-----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKA 67 (445)
Q Consensus 1 ~~-mkI~~v~~~~v~~~-------~g-----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a 67 (445)
|+ ++||+|+++.|... .+ ...++|+|+||+|++|||+++.. ...
T Consensus 1 ~~~p~It~i~~~~v~~~~~~~~~~~~~~~~~~~~~iV~l~t~~Gi~G~Ge~~~~-----------------------~~~ 57 (133)
T d1jdfa2 1 FTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGG-----------------------EKI 57 (133)
T ss_dssp CCCCBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEECC-----------------------HHH
T ss_pred CCCCeEEEEEEEEecccCcccccCCCCcCCccceEEEEEEECCCCEEEEEecCc-----------------------HHH
Confidence 55 49999999988421 11 12478999999999999976532 111
Q ss_pred HHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCC---cccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhc
Q 043137 68 VSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVN---EWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIA 141 (445)
Q Consensus 68 ~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~---~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG 141 (445)
...+ +.++|.|+|+++.+++.+++.+.+....... .+..+.......|+|||||||||+.||.+|+|||+|||
T Consensus 58 ~~~~-~~~~~~l~g~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pl~~LLG 133 (133)
T d1jdfa2 58 RKTL-EDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLG 133 (133)
T ss_dssp HHHH-HHHHHHHTTCBGGGHHHHHHHHHHHTGGGGTTCSCSSSSCCCCHHHHHHHHHHHHHHHHHHHHTSBGGGGST
T ss_pred HHHH-HhhhhhhcCCChhhHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHcC
Confidence 2223 4589999999999999999998743321100 00000112335799999999999999999999999997
|
| >d1sjda2 d.54.1.1 (A:1-125) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=99.75 E-value=2.5e-18 Score=143.80 Aligned_cols=112 Identities=16% Similarity=0.159 Sum_probs=89.9
Q ss_pred eEEEEEEEEEEec--------CC----CCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFD--------SR----GNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~----g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+.. +. .+..++|+|+||+| +|+|++.... .+.|.+++.......
T Consensus 1 MKI~~i~~~~i~~Pl~~p~~~s~~~~~~~~~~iv~l~~~~g-~G~Ge~~~~~-------------~~~~~~e~~~~~~~~ 66 (125)
T d1sjda2 1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMA-------------GPLYSSEYNDGAEHV 66 (125)
T ss_dssp CCCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSC-EEEEECCCBS-------------SSSSSSCBHHHHHHH
T ss_pred CEEEEEEEEEEeccccCCEEccCceEeeeeEEEEEEEecCc-eEEEEEEecC-------------ccccchhhhhhhhhh
Confidence 8999999988742 22 24569999999988 6887532211 123677888888888
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhc
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIA 141 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG 141 (445)
++..+.|.++|.++.+++.+++.+. .+.+ ..+|++||||||||+.||..|+|||+|||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~a~aaid~AlwDl~ak~~~~Pl~~lLG 124 (125)
T d1sjda2 67 LRHYLIPALLAAEDITAAKVTPLLA-KFKG------------HRMAKGALEMAVLDAELRAHERSFAAELG 124 (125)
T ss_dssp HHHTHHHHHHHSSSCCHHHHHHHHT-TSCS------------CHHHHHHHHHHHHHHHHHHTTCBHHHHHT
T ss_pred hhhccchhhcCCCccCHHHHHHHHH-HccC------------CcHHHHHHHHHHHHHHHHHcCCcHHHHhC
Confidence 9999999999999999999988877 4321 25799999999999999999999999998
|
| >d2mnra2 d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=99.74 E-value=1.3e-17 Score=140.36 Aligned_cols=116 Identities=17% Similarity=0.207 Sum_probs=81.1
Q ss_pred eEEEEEEEEEEecCC--------C----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFDSR--------G----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~~~--------g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|+|++|+++.+..+. + ...++|+|+||+|++|+|++.... +.+..... .
T Consensus 2 ~~I~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~i~t~~G~~G~Ge~~~~~------------------~~~~~~~~-~ 62 (130)
T d2mnra2 2 VLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYT------------------PVALKSLK-Q 62 (130)
T ss_dssp CBEEEEEEEEEEECCSSCEEETTEEECSEEEEEEEEEETTSCEEEEEEECSS------------------GGGHHHHH-H
T ss_pred CEEEEEEEEEEEecccCCeeccceEEeeceEEEEEEEECCccceeeeeeecC------------------cccchhHH-H
Confidence 899999999985432 1 246999999999999999654321 11122222 3
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCC
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNK 147 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~ 147 (445)
+.+.+.|.+++.+. +...+++.+.+..... +..+...+|++|||+||||+.||..|+|||+||| |+.
T Consensus 63 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~a~aaid~AlwDl~~K~~~~Pl~~lLG---G~~ 129 (130)
T d2mnra2 63 LLDDMAAMIVNEPL-APVSLEAMLAKRFCLA------GYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLG---ANA 129 (130)
T ss_dssp HHHHHHHHHTTSBS-CHHHHHHHHHHHTTTT------CSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHTT---CCC
T ss_pred HHHHHHHHhccCCC-CHHHHHHHHHHHhhhh------ccCCchHHHHHHHHHHHHHHHHHHhCCCHHHHhC---CCC
Confidence 34567888887654 5666676666333211 1223345799999999999999999999999999 865
|
| >d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=99.74 E-value=9.8e-19 Score=149.60 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=83.8
Q ss_pred EEEEEEEEEEecCC----------C----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHH
Q 043137 4 TITAVKARQIFDSR----------G----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVS 69 (445)
Q Consensus 4 kI~~v~~~~v~~~~----------g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~ 69 (445)
+|++|+++.+..+. . ...++|+|+||+|..|+|++.... . +.+ .....
T Consensus 2 tI~~v~~~~~r~P~~~~~~~s~a~~~~~~~~~~~V~i~td~g~~g~G~~~~~~-~----------------~~~-~~~~~ 63 (139)
T d1yeya2 2 TIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFT-I----------------GRG-NDVQT 63 (139)
T ss_dssp BEEEEEEEEEECCGGGCC------CCSCCCEEEEEEEEESSCTTCEEEEEEEE-C----------------STT-HHHHH
T ss_pred eEEEEEEEEEEccCccCCCCcCCcccCCCcceeEEEEEECCCCcEEEEEEEec-C----------------CCh-HHHHH
Confidence 69999999984321 1 124899999998775554322100 0 111 22233
Q ss_pred HHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCC-CcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhc
Q 043137 70 NVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTV-NEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIA 141 (445)
Q Consensus 70 ~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~-~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG 141 (445)
.+.+.++|.|+|+||.+++.+|+.+++.+.... ..|.+++.++..+|+||||+||||+.||.+|+|||+|||
T Consensus 64 ~~~~~l~p~liG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saIDiALWDl~gK~~~~Pl~~LL~ 136 (139)
T d1yeya2 64 AAVAALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIA 136 (139)
T ss_dssp HHHHTTHHHHTTCBHHHHHHCHHHHHHHHHTCHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHH
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHHHHHhcccccccccCCcchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhh
Confidence 566789999999999999999998875443211 012233455566899999999999999999999999999
|
| >d1bqga2 d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Pseudomonas putida [TaxId: 303]
Probab=99.73 E-value=6.9e-18 Score=142.94 Aligned_cols=114 Identities=17% Similarity=0.153 Sum_probs=80.5
Q ss_pred EEEEEEEEEEecC-------CC-----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHH
Q 043137 4 TITAVKARQIFDS-------RG-----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNV 71 (445)
Q Consensus 4 kI~~v~~~~v~~~-------~g-----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i 71 (445)
|||+|+++.|... .+ ...++|+|+||+|++|||+++.. ......+
T Consensus 4 ~It~ve~~~v~~~~~~~~~~~g~~~~~~~~~lV~i~td~G~~G~Ge~~~~-----------------------~~~~~~~ 60 (132)
T d1bqga2 4 VITDLKVVPVAGHDSMLLNLSGAHGPLFTRNILILTDSSGHVGVGEVPGG-----------------------EGIRKTL 60 (132)
T ss_dssp BEEEEEEEEEEEECCCEEETTEECCSEEEEEEEEEEETTSCEEEEEEECC-----------------------HHHHHHH
T ss_pred EEEEEEEEEEeccCcccccCCCCCCCcceEEEEEEEECCCcEEEEEeCCc-----------------------HhHHHHH
Confidence 8999999988431 11 23468999999999999976531 1112223
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHHhccCCC---cccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhc
Q 043137 72 NAIIGPALAGKDPTEQTAIDNYMVQQLDGTVN---EWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIA 141 (445)
Q Consensus 72 ~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~---~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG 141 (445)
+.+.|.++|+++.+++.+++.|.+....... .+..+.......|+|||||||||+.||.+|+|||+|||
T Consensus 61 -~~~~~~~ig~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pl~~LLG 132 (132)
T d1bqga2 61 -EDARHLLINQSIGNYQSLLNKVRNAFADRDVGGRGLQTFDLRIAVHAVTAVESALLDLLGQHLQVPVAALLG 132 (132)
T ss_dssp -HTTHHHHBTCBGGGHHHHHHHHHHHTCC------------CHHHHHHHHHHHHHHHHHHHHHHTCBGGGGST
T ss_pred -HHhhhhhcCcChHHHHHHHHHHHHHhcccCcccccccccccchHHHHHHHHHHHHHHHHHHHcCCcHHHHcC
Confidence 4688999999999999999999844321100 00000111235699999999999999999999999997
|
| >d1tzza2 d.54.1.1 (A:1006-1145) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.72 E-value=2.8e-18 Score=146.86 Aligned_cols=110 Identities=20% Similarity=0.158 Sum_probs=77.6
Q ss_pred eEEEEEEEEEEecC------C----CCceEEEEEEeCCCc-----eEEEeccCCCccccccceeeccCCCCCCCccHHHH
Q 043137 3 ITITAVKARQIFDS------R----GNPTVEVDVTTSDGH-----VARAAVPSGASTGIYEALELRDGGSDYLGKGVSKA 67 (445)
Q Consensus 3 mkI~~v~~~~v~~~------~----g~~~v~V~v~td~G~-----~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a 67 (445)
|||++|+...+-.. . ..+.++|+|+||+|+ +|||++..+. + ..
T Consensus 1 mkIvdi~~~~vPl~~p~~~s~~~~~~~~~~lV~i~Td~G~~G~G~~G~g~~~~~~----------------~---~~--- 58 (140)
T d1tzza2 1 VRIVDVREITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFNSNGR----------------Y---GQ--- 58 (140)
T ss_dssp CCEEEEEEEEEECCC---------CCCEEEEEEEEEEEECSSSEEEEEEECCTTS----------------C---CC---
T ss_pred CeEEEEEEEEecCCCCcccccceeeceEEEEEEEEEeecccCcceEeeEecCCch----------------h---HH---
Confidence 89999987666321 1 246789999999655 5666543321 0 01
Q ss_pred HHHHHHhHhhhhcCCCC----------CCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchh
Q 043137 68 VSNVNAIIGPALAGKDP----------TEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLY 137 (445)
Q Consensus 68 ~~~i~~~l~p~LiG~d~----------~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~ 137 (445)
...+.+.++|.|+|++| .+.+.+++.|. .... +|+.+....|+|||||||||+.||.+|+|||
T Consensus 59 ~~~~~~~~~~~lig~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~g~~~~A~aaiDiAlWDl~gK~~g~Pl~ 131 (140)
T d1tzza2 59 GGLIRERFASRILEADPKKLLNEAGDNLDPDKVWAAMM-INEK------PGGHGERSVAVGTIDMAVWDAVAKIAGKPLF 131 (140)
T ss_dssp HHHHHHTHHHHHHTSCGGGSBCTTSSSBCHHHHHHHHT-TTCC------SCCCSHHHHHHHHHHHHHHHHHHHHHTSBHH
T ss_pred HHHHHHHHHHHHhcccHhhHhhhcccccChHHHHHHHH-hhcc------cCCCchhHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 12356778999999876 46688888887 3221 2233444579999999999999999999999
Q ss_pred hhhc
Q 043137 138 KHIA 141 (445)
Q Consensus 138 ~lLG 141 (445)
+|||
T Consensus 132 ~LLg 135 (140)
T d1tzza2 132 RLLA 135 (140)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9999
|
| >d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.72 E-value=9.7e-18 Score=140.74 Aligned_cols=112 Identities=18% Similarity=0.126 Sum_probs=85.6
Q ss_pred eEEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+.. +.+ ++.++|++++| |++|+|++..... +.|.++........
T Consensus 3 ~kI~~ie~~~~~~Pl~~p~~~s~~~~~~~~~vvv~~~~~-G~~G~Ge~~~~~~-------------~~~~~~~~~~~~~~ 68 (127)
T d1r0ma2 3 FKIEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHGE-GVQGVAEGTMEAR-------------PMYREETIAGALDL 68 (127)
T ss_dssp EECCEEEEEEEEEEBC----------CEEEEEEEEEEET-TEEEEEECCCBSS-------------SSSSSCBHHHHHHH
T ss_pred ceEEEEEEEEEeecccCCEECcCcEEEeeeEEEEEEEcC-CcEEEEEEEcCCC-------------cccchhhhhhhhhh
Confidence 6999999998853 222 24577777765 9999986543211 12556677887888
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhc
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIA 141 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG 141 (445)
+.+.+.|.++|+++.++++++..+. .+.+ ...|++||||||||+.||.+++|||++||
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~a~aaid~AlwDl~aK~~~~pl~~llG 126 (127)
T d1r0ma2 69 LRGTFLPAILGQTFANPEAVSDALG-SYRG------------NRMARAMVEMAAWDLWARTLGVPLGTLLG 126 (127)
T ss_dssp HHHTHHHHHTTCEESSHHHHHHTTT-TSCS------------CHHHHHHHHHHHHHHHHHHHTCBHHHHHT
T ss_pred hhhhcccccccCChhhHHHHhhhhc-ccCC------------chHHHHHHHHHHHHHHHHHhCCcHHHHcC
Confidence 8888999999999999999876665 3211 14699999999999999999999999999
|
| >d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=97.92 E-value=4e-05 Score=63.00 Aligned_cols=107 Identities=18% Similarity=0.151 Sum_probs=79.0
Q ss_pred eEEEEEEeCCCceEEE-eccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhc
Q 043137 21 TVEVDVTTSDGHVARA-AVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLD 99 (445)
Q Consensus 21 ~v~V~v~td~G~~G~g-~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~ 99 (445)
++.|.+..++|-+.+| |+.. ...|.+.. +|-|. ...-+..+++.|.|.|+|+|...+......+. .+.
T Consensus 52 sisV~l~L~dG~va~GDCaaV-qySGagGR------DPLF~---A~~~i~~~e~~v~p~L~g~d~~~Fr~~A~~~d-~~~ 120 (160)
T d1kkoa2 52 CVSVQLILENGAVAVGDCAAV-QYSGAGGR------DPLFL---AEHFIPFLNDHIKPLLEGRDVDAFLPNARFFD-KLR 120 (160)
T ss_dssp EEEEEEEETTSCEEEEEECCC-TTTTSTTC------CCCCC---HHHHHHHHHHHTHHHHTTCBCSCSHHHHHHHH-HCE
T ss_pred EEEEEEEeCCCCEEEeeehhe-eecCCCCC------Ccccc---HHHHHHHHHHhhhHHHhCCcHHHHHHHHHHHh-hcc
Confidence 4889999999999998 4322 11222221 12233 45667789999999999999999999888887 553
Q ss_pred cCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccC
Q 043137 100 GTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSG 145 (445)
Q Consensus 100 ~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G 145 (445)
- + ...+..+...+|+.||.|+.||+.+.-..+.+..+||
T Consensus 121 ~--~-----g~~LHtAiRYGvSQALL~A~A~a~r~tmaeVi~~Ey~ 159 (160)
T d1kkoa2 121 I--D-----GNLLHTAVRYGLSQALLDATALASGRLKTEVVCDEWQ 159 (160)
T ss_dssp E--T-----TEECCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTT
T ss_pred c--C-----CCchhHHHHHhHHHHHHHHHHHHcCccHHHHHHHHhC
Confidence 1 1 2457788999999999999999999888888764443
|
| >d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=97.83 E-value=9.7e-05 Score=60.61 Aligned_cols=103 Identities=17% Similarity=0.263 Sum_probs=77.1
Q ss_pred eEEEEEEeCCCceEEE-eccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhc
Q 043137 21 TVEVDVTTSDGHVARA-AVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLD 99 (445)
Q Consensus 21 ~v~V~v~td~G~~G~g-~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~ 99 (445)
++.|.+.+++|-+.+| |+.. ...|.+.. +|-|. ...-+..+++.|.|.|+|+|...+......+. .+.
T Consensus 52 sisV~l~L~dG~va~GDCaaV-qySGagGR------DPLF~---A~~~i~~~e~~v~p~L~g~d~~~Fr~~a~~~d-~~~ 120 (160)
T d1kcza2 52 SISVLLVLEDGQVAHGDCAAV-QYSGAGGR------DPLFL---AKDFIPVIEKEIAPKLIGREITNFKPMAEEFD-KMT 120 (160)
T ss_dssp EEEEEEEETTSCEEEEEECCC-TTTTSTTS------CSCCC---HHHHHHHHHHHTHHHHTTCBCCCHHHHHHHHH-HCE
T ss_pred EEEEEEEeCCCCEEEeeehhe-eecCCCCC------Ccccc---HHHHHHHHHHhhhHHHhCCcHHHHHHHHHHHh-hcc
Confidence 5899999999999998 4322 11222221 12233 45667789999999999999999999888888 554
Q ss_pred cCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhc
Q 043137 100 GTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIA 141 (445)
Q Consensus 100 ~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG 141 (445)
-. ...+..+...+|+.||.|+.|++.+.-..+.+.
T Consensus 121 ~~-------g~~LHtAiRYGvSQALL~A~A~a~r~tmaeVi~ 155 (160)
T d1kcza2 121 VN-------GNRLHTAIRYGITQAILDAVAKTRKVTMAEVIR 155 (160)
T ss_dssp ET-------TEECCHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred cC-------CcchhHHHHHhHHHHHHHHHHHHcCCcHHHHhH
Confidence 21 245778899999999999999999888777775
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.62 E-value=0.21 Score=46.17 Aligned_cols=72 Identities=13% Similarity=0.211 Sum_probs=46.3
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEE--------------CCCCcCCHHHH-HHHHHHhCCCceEEeCcccccCHHHHHHH
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIE--------------DPFDQDDWEHY-AKLTSEVGEKVQIVGDDLLVTNPKRVEKA 341 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iE--------------dP~~~~D~~~~-~~L~~~~~~~vpI~gde~~~~~~~~~~~~ 341 (445)
.+++.++++++ .+.+++.++.++. .|++...+..+ +++++.++ +||++--. +++++...++
T Consensus 223 ~g~~~~~~~~~-~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~--~pvi~~G~-i~~~~~ae~~ 298 (330)
T d1ps9a1 223 DGGTFAETVEL-AQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVS--LPLVTTNR-INDPQVADDI 298 (330)
T ss_dssp TCCCHHHHHHH-HHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCS--SCEEECSS-CCSHHHHHHH
T ss_pred CCCCHHHHHHH-HHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHHHHHHhhCC--ceEEEeCC-CCCHHHHHHH
Confidence 35677888876 4556665555543 23333333333 45555555 88754433 4679999999
Q ss_pred HhcCCCCEEEe
Q 043137 342 IKEKTCNALLL 352 (445)
Q Consensus 342 i~~~a~d~v~i 352 (445)
|+.+.+|+|.+
T Consensus 299 l~~g~~D~V~~ 309 (330)
T d1ps9a1 299 LSRGDADMVSM 309 (330)
T ss_dssp HHTTSCSEEEE
T ss_pred HHCCCcchhHh
Confidence 99999999875
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=82.62 E-value=4.4 Score=37.26 Aligned_cols=71 Identities=11% Similarity=0.021 Sum_probs=48.5
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEECCC------CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEE
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIEDPF------DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNAL 350 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEdP~------~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v 350 (445)
.+.+.++++.+ .+.+++.++.||+=-. ++....-.+.+++.++ +|+++.-. . +++...++|+.+.+|+|
T Consensus 245 gg~~~~e~~~~-~~~l~~~gvd~i~vs~~~~~~~~~~~~~~~~~~~~~~~--~~vi~~G~-~-t~~~ae~~l~~G~~DlV 319 (363)
T d1vyra_ 245 GPNEEADALYL-IEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFH--GVIIGAGA-Y-TAEKAEDLIGKGLIDAV 319 (363)
T ss_dssp CTTHHHHHHHH-HHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCC--SEEEEESS-C-CHHHHHHHHHTTSCSEE
T ss_pred cccchHHHHHH-HHHHHhcCCeeeecccCCccCCccccHHHHHHHHHhcC--ceEEecCC-C-CHHHHHHHHHCCCccee
Confidence 35677888876 4567888877764221 1223344566777777 78755444 2 59999999999999999
Q ss_pred Ee
Q 043137 351 LL 352 (445)
Q Consensus 351 ~i 352 (445)
.+
T Consensus 320 ~~ 321 (363)
T d1vyra_ 320 AF 321 (363)
T ss_dssp EE
T ss_pred hh
Confidence 74
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=81.39 E-value=11 Score=33.94 Aligned_cols=72 Identities=6% Similarity=0.109 Sum_probs=49.0
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEE-------CC---CC-cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcC
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIE-------DP---FD-QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEK 345 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iE-------dP---~~-~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~ 345 (445)
.+.+.++.+++ .+++++.++.+++ .| .. .....--+.+++.++ +||++--. +++++...++|+.+
T Consensus 223 ~g~~~~~~~~~-~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~--~pvi~~G~-i~~~~~ae~~l~~g 298 (337)
T d1z41a1 223 KGLDIADHIGF-AKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQAD--MATGAVGM-ITDGSMAEEILQNG 298 (337)
T ss_dssp TSCCHHHHHHH-HHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHC--CEEEECSS-CCSHHHHHHHHHTT
T ss_pred CccchhhhHHH-HHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhcC--ceEEEeCC-cCCHHHHHHHHHCC
Confidence 35677888876 5567776655432 11 11 224455578888888 89855433 46799999999999
Q ss_pred CCCEEEe
Q 043137 346 TCNALLL 352 (445)
Q Consensus 346 a~d~v~i 352 (445)
.+|+|.+
T Consensus 299 ~~D~V~~ 305 (337)
T d1z41a1 299 RADLIFI 305 (337)
T ss_dssp SCSEEEE
T ss_pred Ccceehh
Confidence 9999874
|