Citrus Sinensis ID: 043142
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 512 | 2.2.26 [Sep-21-2011] | |||||||
| Q9STF3 | 657 | Pentatricopeptide repeat- | yes | no | 0.988 | 0.770 | 0.417 | 1e-131 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.996 | 0.630 | 0.429 | 1e-125 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.957 | 0.685 | 0.414 | 1e-122 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.990 | 0.584 | 0.408 | 1e-121 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.998 | 0.736 | 0.394 | 1e-121 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.984 | 0.612 | 0.422 | 1e-119 | |
| A8MQA3 | 595 | Pentatricopeptide repeat- | no | no | 0.951 | 0.818 | 0.410 | 1e-118 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.980 | 0.677 | 0.408 | 1e-118 | |
| Q9LIC3 | 628 | Putative pentatricopeptid | no | no | 0.984 | 0.802 | 0.379 | 1e-117 | |
| Q9LW32 | 659 | Pentatricopeptide repeat- | no | no | 0.996 | 0.773 | 0.410 | 1e-117 |
| >sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 468 bits (1203), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/546 (41%), Positives = 345/546 (63%), Gaps = 40/546 (7%)
Query: 7 PVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLE 66
P LATKL+ +YS + A ++FD+ +R +++WN L RA G E + LY+++
Sbjct: 112 PFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNR 171
Query: 67 IGLVPDNFTFPFALKACSA----LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCS 122
IG+ D FT+ + LKAC A ++ + +G+ IH + R + + V++ L+DMYA+
Sbjct: 172 IGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFG 231
Query: 123 CVVNARQVFDKILERD-----------------------------------PSEATLVTV 147
CV A VF + R+ P+ T+V+V
Sbjct: 232 CVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSV 291
Query: 148 ISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV 207
+ A A +AAL QG+ +HG+ R + + V +ALV MY +CG ++V + +F+++ ++ V
Sbjct: 292 LQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDV 351
Query: 208 VSWNAMITGYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFES 266
VSWN++I+ Y +HG+ KA+ +FE+M + P +TFV VL ACS GL +EG+ FE+
Sbjct: 352 VSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFET 411
Query: 267 MVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVK 326
M RD+ I P ++HY CMVDLLG + RLDEA ++ MR +P P VWG+LL SC++HG+V+
Sbjct: 412 MWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVE 471
Query: 327 LAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVK 386
LAE A +L LEP +AGNYV+L++IYA A W+ V +++KL+ RG++K W+EV+
Sbjct: 472 LAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVR 531
Query: 387 NKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSE 446
K ++F+S D +P ++I+A L L MKE GY+P T+ V +++E +EK ++ HSE
Sbjct: 532 RKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSE 591
Query: 447 RLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGIC 506
+LA+AFGLINT G + ITKNL++C+DCH+ KFISK E+EI VRDVNR+H FK+G+C
Sbjct: 592 KLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVC 651
Query: 507 SCGDYW 512
SCGDYW
Sbjct: 652 SCGDYW 657
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Required for the intergenic processing between chloroplast rsp7 and ndhB transcripts. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/545 (42%), Positives = 331/545 (60%), Gaps = 35/545 (6%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
GF ++T LV +Y+ C L A QLFD + +RN+ WN +I AY N + A+ ++
Sbjct: 266 GFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIF 325
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
++L+ G+ P + + AL AC+ L +E GR IH+ + + +V V +LI MY KC
Sbjct: 326 QKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKC 385
Query: 122 SCVVNARQVFDKILER---------------------------------DPSEATLVTVI 148
V A +F K+ R P T V+VI
Sbjct: 386 KEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVI 445
Query: 149 SASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208
+A A+++ + +HG R + NV V TALVDMYAKCG + +AR +F+ + E+ V
Sbjct: 446 TAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVT 505
Query: 209 SWNAMITGYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESM 267
+WNAMI GY HG AL+LFE+M K ++P+ +TF+ V+SACS GL + G F M
Sbjct: 506 TWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMM 565
Query: 268 VRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKL 327
+Y I+ S+ HY MVDLLG +GRL+EA D IMQM VKP V+GA+L +C++H +V
Sbjct: 566 KENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNF 625
Query: 328 AELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKN 387
AE A E+L EL P D G +V+L+NIY A+ WE V ++R M+ +G++K+ CS +E+KN
Sbjct: 626 AEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKN 685
Query: 388 KAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSER 447
+ H+F SG +HP+ +IYA L+ L +KEAGYVP T V VEND K ++ HSE+
Sbjct: 686 EVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEK 744
Query: 448 LAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICS 507
LAI+FGL+NT GT + + KNL++C DCH A K+IS +T REI VRD+ R+HHFK+G CS
Sbjct: 745 LAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACS 804
Query: 508 CGDYW 512
CGDYW
Sbjct: 805 CGDYW 809
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/524 (41%), Positives = 327/524 (62%), Gaps = 34/524 (6%)
Query: 23 LHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKA 82
+ + ++F+ +P++++ +N +I YA +G YE A+ + + L PD+FT L
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251
Query: 83 CSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD---- 138
S + +G+ IH VIR ++DV++G++L+DMYAK + + ++ +VF ++ RD
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311
Query: 139 -----------------------------PSEATLVTVISASADIAALPQGRELHGFSWR 169
P +VI A A +A L G++LHG+ R
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLR 371
Query: 170 HRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDL 229
F N+ + +ALVDMY+KCG +K AR +F+++ VSW A+I G+A+HGH +A+ L
Sbjct: 372 GGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSL 431
Query: 230 FEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLG 288
FE+MK + V+P+ + FV VL+ACS GL DE +F SM + Y ++ ++HY + DLLG
Sbjct: 432 FEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLG 491
Query: 289 HSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVI 348
+G+L+EA + I +M V+P VW LL+SC +H +++LAE EK+ ++ + G YV+
Sbjct: 492 RAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVL 551
Query: 349 LSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAK 408
+ N+YA W+ +AKLR M +G++K ACSWIE+KNK H F+SGD SHP+ D+I
Sbjct: 552 MCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEF 611
Query: 409 LKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLINTPDGTRLLITKN 468
LK + +M++ GYV T V HDV+ + K ++ HSERLA+AFG+INT GT + +TKN
Sbjct: 612 LKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKN 671
Query: 469 LKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
++IC DCH+AIKFISKITEREI VRD +R+HHF G CSCGDYW
Sbjct: 672 IRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/548 (40%), Positives = 333/548 (60%), Gaps = 41/548 (7%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIP-QRNLFLWNVLIRAYAWNGPYEVAIEL 60
GF F + T L+ YS C + +A +LF I N+ W +I + N E A++L
Sbjct: 325 GFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDL 384
Query: 61 YYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120
+ + G+ P+ FT+ L A +S E +H V++ +E VG AL+D Y K
Sbjct: 385 FSEMKRKGVRPNEFTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVK 440
Query: 121 CSCVVNARQVFDKILERD---------------------------------PSEATLVTV 147
V A +VF I ++D P+E T ++
Sbjct: 441 LGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSI 500
Query: 148 ISA-SADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR 206
++ +A A++ QG++ HGF+ + R + ++ V +AL+ MYAK G ++ A +F++ REK
Sbjct: 501 LNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKD 560
Query: 207 VVSWNAMITGYAMHGHSTKALDLFEKMKD-EVQPDHITFVGVLSACSRGGLFDEGRMFFE 265
+VSWN+MI+GYA HG + KALD+F++MK +V+ D +TF+GV +AC+ GL +EG +F+
Sbjct: 561 LVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFD 620
Query: 266 SMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHV 325
MVRD I P+ +H +CMVDL +G+L++A +I M +W +L +C++H
Sbjct: 621 IMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKT 680
Query: 326 KLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEV 385
+L LA EK+I ++P D+ YV+LSN+YA + +W+ AK+RKLM +R +KK SWIEV
Sbjct: 681 ELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEV 740
Query: 386 KNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHS 445
KNK ++FL+GD SHP D+IY KL+ L R+K+ GY P T V D++++ K ++ HS
Sbjct: 741 KNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHS 800
Query: 446 ERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHF-KDG 504
ERLAIAFGLI TP G+ LLI KNL++C DCH+ IK I+KI EREI VRD NR+HHF DG
Sbjct: 801 ERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDG 860
Query: 505 ICSCGDYW 512
+CSCGD+W
Sbjct: 861 VCSCGDFW 868
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/548 (39%), Positives = 334/548 (60%), Gaps = 37/548 (6%)
Query: 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFD--RIPQRNLFLWNVLIRAYAWNGPYEVAI 58
+GF + L+ LY+ C L +A +F+ +P+R + W ++ AYA NG A+
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEAL 207
Query: 59 ELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMY 118
E++ ++ ++ + PD L A + L +++GR IH V++ E + + +L MY
Sbjct: 208 EIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMY 267
Query: 119 AKCSCVVNARQVFDKI-------------------------------LERD--PSEATLV 145
AKC V A+ +FDK+ + +D P ++
Sbjct: 268 AKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISIT 327
Query: 146 TVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK 205
+ ISA A + +L Q R ++ + R + +V + +AL+DM+AKCG V+ AR +F++ ++
Sbjct: 328 SAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDR 387
Query: 206 RVVSWNAMITGYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFF 264
VV W+AMI GY +HG + +A+ L+ M + V P+ +TF+G+L AC+ G+ EG FF
Sbjct: 388 DVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFF 447
Query: 265 ESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGH 324
M D+ I+P QHY C++DLLG +G LD+A ++I M V+P VWGALL++CK H H
Sbjct: 448 NRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRH 506
Query: 325 VKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIE 384
V+L E A ++L ++P + G+YV LSN+YA A W+ VA++R M ++G+ K + CSW+E
Sbjct: 507 VELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVE 566
Query: 385 VKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCH 444
V+ + AF GD SHP +EI +++W+E R+KE G+V ++ HD+ ++E +C H
Sbjct: 567 VRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSH 626
Query: 445 SERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDG 504
SER+AIA+GLI+TP GT L ITKNL+ C +CH A K ISK+ +REI VRD NR+HHFKDG
Sbjct: 627 SERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDG 686
Query: 505 ICSCGDYW 512
+CSCGDYW
Sbjct: 687 VCSCGDYW 694
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/540 (42%), Positives = 321/540 (59%), Gaps = 36/540 (6%)
Query: 9 LATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIG 68
++ KL+ LY+ L + ++FDR+ R+L WN +I+AY N AI L+ +
Sbjct: 284 VSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSR 343
Query: 69 LVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKW-ETDVFVGAALIDMYAKCSCVVNA 127
+ PD T S L I R + +R W D+ +G A++ MYAK V +A
Sbjct: 344 IQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSA 403
Query: 128 RQVFD------------------------------KILERD----PSEATLVTVISASAD 153
R VF+ I+E + ++ T V+V+ A +
Sbjct: 404 RAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQ 463
Query: 154 IAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAM 213
AL QG +LHG ++ L+V V T+L DMY KCG ++ A +LF Q+ V WN +
Sbjct: 464 AGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTL 523
Query: 214 ITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYH 272
I + HGH KA+ LF++M DE V+PDHITFV +LSACS GL DEG+ FE M DY
Sbjct: 524 IACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYG 583
Query: 273 IDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELAL 332
I PS++HY CMVD+ G +G+L+ A I M ++PD +WGALL++C++HG+V L ++A
Sbjct: 584 ITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIAS 643
Query: 333 EKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAF 392
E L E+EP G +V+LSN+YA A WEGV ++R + +G++K+ S +EV NK F
Sbjct: 644 EHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVF 703
Query: 393 LSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAF 452
+G+ +HP +E+Y +L L+ ++K GYVP V DVE+DEK +++ HSERLAIAF
Sbjct: 704 YTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAF 763
Query: 453 GLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
LI TP T + I KNL++C DCH KFISKITEREI VRD NR+HHFK+G+CSCGDYW
Sbjct: 764 ALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/524 (41%), Positives = 324/524 (61%), Gaps = 37/524 (7%)
Query: 26 AHQLFDRIPQR-NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLV-PDNFTFPFALKAC 83
AH++F +I + N+F+WN LIR YA G A LY + GLV PD T+PF +KA
Sbjct: 72 AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131
Query: 84 SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD----- 138
+ ++ + G IH VIR+ + + ++V +L+ +YA C V +A +VFDK+ E+D
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191
Query: 139 -----------PSEA-----------------TLVTVISASADIAALPQGRELHGFSWRH 170
P EA T+V+++SA A I AL G+ +H + +
Sbjct: 192 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV 251
Query: 171 RFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLF 230
N+ L+D+YA+CG V+ A+ LF+++ +K VSW ++I G A++G +A++LF
Sbjct: 252 GLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELF 311
Query: 231 EKMK--DEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLG 288
+ M+ + + P ITFVG+L ACS G+ EG +F M +Y I+P ++H+ CMVDLL
Sbjct: 312 KYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLA 371
Query: 289 HSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVI 348
+G++ +A + I M ++P+ +W LL +C +HG LAE A ++++LEP+ +G+YV+
Sbjct: 372 RAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVL 431
Query: 349 LSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAK 408
LSN+YA W V K+RK M+ G+KK S +EV N+ H FL GD SHP D IYAK
Sbjct: 432 LSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAK 491
Query: 409 LKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLINTPDGTRLLITKN 468
LK + GR++ GYVP +V+ DVE +EK N + HSE++AIAF LI+TP+ + + + KN
Sbjct: 492 LKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKN 551
Query: 469 LKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
L++C DCH+AIK +SK+ REI VRD +R+HHFK+G CSC DYW
Sbjct: 552 LRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/538 (40%), Positives = 331/538 (61%), Gaps = 36/538 (6%)
Query: 11 TKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLV 70
T L+ Y++ + NA +LFD IP +++ WN +I YA G Y+ A+EL+ +++ +
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263
Query: 71 PDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQV 130
PD T + AC+ +IE GR++H + + + +++ + ALID+Y+KC + A +
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 323
Query: 131 FDKILERD---------------------------------PSEATLVTVISASADIAAL 157
F+++ +D P++ T+++++ A A + A+
Sbjct: 324 FERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 383
Query: 158 PQGRELHGF-SWRHRFELNVK-VKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMIT 215
GR +H + R + N ++T+L+DMYAKCG ++ A +F + K + SWNAMI
Sbjct: 384 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 443
Query: 216 GYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHID 274
G+AMHG + + DLF +M K +QPD ITFVG+LSACS G+ D GR F +M +DY +
Sbjct: 444 GFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMT 503
Query: 275 PSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEK 334
P ++HY CM+DLLGHSG EA ++I M ++PD +W +LL +CK+HG+V+L E E
Sbjct: 504 PKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAEN 563
Query: 335 LIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLS 394
LI++EP + G+YV+LSNIYA A W VAK R L+ D+G+KK CS IE+ + H F+
Sbjct: 564 LIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFII 623
Query: 395 GDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGL 454
GD HP EIY L+ +E +++AG+VP T V ++E + K + HSE+LAIAFGL
Sbjct: 624 GDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGL 683
Query: 455 INTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
I+T GT+L I KNL++C +CH A K ISKI +REI RD R+HHF+DG+CSC DYW
Sbjct: 684 ISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 205/540 (37%), Positives = 318/540 (58%), Gaps = 36/540 (6%)
Query: 9 LATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIG 68
L T+L+ Y CDCL +A ++ D +P++N+ W +I Y+ G A+ ++ ++
Sbjct: 89 LRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSD 148
Query: 69 LVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNAR 128
P+ FTF L +C S + G++IH +++ +++ +FVG++L+DMYAK + AR
Sbjct: 149 GKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAR 208
Query: 129 QVFDKILERD---------------------------------PSEATLVTVISASADIA 155
++F+ + ERD P+ T ++++A + +A
Sbjct: 209 EIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLA 268
Query: 156 ALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMIT 215
L G++ H R ++ +L+DMY+KCG + AR LF+ + E+ +SWNAM+
Sbjct: 269 LLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLV 328
Query: 216 GYAMHGHSTKALDLFEKMKDE--VQPDHITFVGVLSACSRGGLFDEGRMFFESMVR-DYH 272
GY+ HG + L+LF M+DE V+PD +T + VLS CS G + D G F+ MV +Y
Sbjct: 329 GYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYG 388
Query: 273 IDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELAL 332
P +HY C+VD+LG +GR+DEA + I +M KP GV G+LL +C++H V + E
Sbjct: 389 TKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVG 448
Query: 333 EKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAF 392
+LIE+EP +AGNYVILSN+YA A W V +R +M+ + + K SWI+ + H F
Sbjct: 449 RRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYF 508
Query: 393 LSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAF 452
+ D +HP +E+ AK+K + +MK+AGYVP V +DV+ ++K M+ HSE+LA+ F
Sbjct: 509 HANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTF 568
Query: 453 GLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
GLI T +G + + KNL+IC DCH K SK+ ERE+++RD NR+H DGICSCGDYW
Sbjct: 569 GLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/555 (41%), Positives = 331/555 (59%), Gaps = 45/555 (8%)
Query: 3 FGFHP--VLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIEL 60
FG+ +++ L+ +YS C L +A ++FD IP+RN+ W +IR Y NG A+ L
Sbjct: 105 FGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSL 164
Query: 61 YYRLL------EIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAAL 114
+ LL + + D+ + ACS + A IH VI+ ++ V VG L
Sbjct: 165 FKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTL 224
Query: 115 IDMYAKCS--CVVNARQVFDKILERD----------------PSEA-------------- 142
+D YAK V AR++FD+I+++D +EA
Sbjct: 225 LDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVT 284
Query: 143 ----TLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNL 198
TL TV+ A + AL G+ +H R E +V V T+++DMY KCG V+ AR
Sbjct: 285 FNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKA 344
Query: 199 FEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLF 257
F++++ K V SW AMI GY MHGH+ KAL+LF M D V+P++ITFV VL+ACS GL
Sbjct: 345 FDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLH 404
Query: 258 DEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLN 317
EG +F +M + ++P ++HY CMVDLLG +G L +A DLI +M++KPD +W +LL
Sbjct: 405 VEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLA 464
Query: 318 SCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKS 377
+C++H +V+LAE+++ +L EL+ + G Y++LS+IYA A W+ V ++R +M +RG+ K
Sbjct: 465 ACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKP 524
Query: 378 IACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEK 437
S +E+ + H FL GD HP ++IY L L ++ EAGYV T SV HDV+ +EK
Sbjct: 525 PGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEK 584
Query: 438 ANMICCHSERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNR 497
+ HSE+LAIAFG++NT G+ + + KNL++C DCH IK ISKI +RE VRD R
Sbjct: 585 EMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKR 644
Query: 498 YHHFKDGICSCGDYW 512
+HHFKDG CSCGDYW
Sbjct: 645 FHHFKDGGCSCGDYW 659
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 512 | ||||||
| 359482590 | 648 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.788 | 0.737 | 0.0 | |
| 356557279 | 631 | PREDICTED: putative pentatricopeptide re | 1.0 | 0.811 | 0.706 | 0.0 | |
| 449475140 | 574 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.891 | 0.680 | 0.0 | |
| 357454909 | 620 | Pentatricopeptide repeat-containing prot | 1.0 | 0.825 | 0.686 | 0.0 | |
| 297743264 | 550 | unnamed protein product [Vitis vinifera] | 0.871 | 0.810 | 0.659 | 0.0 | |
| 326488203 | 637 | predicted protein [Hordeum vulgare subsp | 0.998 | 0.802 | 0.586 | 0.0 | |
| 357124213 | 637 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.802 | 0.593 | 1e-180 | |
| 242041565 | 640 | hypothetical protein SORBIDRAFT_01g04107 | 0.998 | 0.798 | 0.580 | 1e-177 | |
| 414865824 | 645 | TPA: hypothetical protein ZEAMMB73_03974 | 0.998 | 0.792 | 0.567 | 1e-173 | |
| 148909481 | 795 | unknown [Picea sitchensis] | 0.986 | 0.635 | 0.439 | 1e-136 |
| >gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/544 (73%), Positives = 448/544 (82%), Gaps = 33/544 (6%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
GFGF V+ATKLV+LY CD L +A LFDRIP+ N+FLWNVLIR YAWNGPYE A++LY
Sbjct: 105 GFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLY 164
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
Y++ + GLVPDNFTFPF LKAC+ALSAIE GR IHE V++ WE DVFVGAALIDMYAKC
Sbjct: 165 YQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKC 224
Query: 122 SCVVNARQVFDKILERD---------------------------------PSEATLVTVI 148
CV +AR+VFDKIL RD P+EATLVT I
Sbjct: 225 GCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAI 284
Query: 149 SASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208
SASAD AALPQGRELHG SWR FE + KVKTALVDMYAKCG V+VARNLFE+L KRVV
Sbjct: 285 SASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVV 344
Query: 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268
SWNAMITGYAMHGH+T+ALDLFE+M +PDHITFVGVLSACS GGL +EG MFFE+M+
Sbjct: 345 SWNAMITGYAMHGHATEALDLFEEMNRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMI 404
Query: 269 RDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLA 328
RDY IDP+VQHYTCMVDLLGHSGRLDEA +LIMQM+V PD GVWGALLNSCK+H +V+L
Sbjct: 405 RDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELG 464
Query: 329 ELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNK 388
E+ALE+LIELEP DAGNYVILSNIYA+A WEGVAKLRKLM DR +KKSIACSWIEVKNK
Sbjct: 465 EIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNK 524
Query: 389 AHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERL 448
HAFLSGD SHP DEIY++L+ + G MKEAGY P T SVFHDVE+DEKANM+C HSERL
Sbjct: 525 VHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERL 584
Query: 449 AIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSC 508
AIAFGLI+TP GTRLLITKNL+IC+DCH+AIKFISKITEREITVRDVNRYHHFKDG+CSC
Sbjct: 585 AIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSC 644
Query: 509 GDYW 512
GDYW
Sbjct: 645 GDYW 648
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/545 (70%), Positives = 440/545 (80%), Gaps = 33/545 (6%)
Query: 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIEL 60
+G ++ LATKLV+ YS C+ L NAH LFD+IP+ NLFLWNVLIRAYAWNGP+E AI L
Sbjct: 87 LGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISL 146
Query: 61 YYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120
Y+++LE GL PDNFT PF LKACSALS I EGR IHE VIR+ WE DVFVGAAL+DMYAK
Sbjct: 147 YHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAK 206
Query: 121 CSCVVNARQVFDKILERD---------------------------------PSEATLVTV 147
C CVV+AR VFDKI++RD P+EATLVTV
Sbjct: 207 CGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTV 266
Query: 148 ISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV 207
IS+SADIA LP GRE+HGF WRH F+ N KVKTAL+DMYAKCG VKVA LFE+LREKRV
Sbjct: 267 ISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRV 326
Query: 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESM 267
VSWNA+ITGYAMHG + +ALDLFE+M E QPDHITFVG L+ACSRG L DEGR + M
Sbjct: 327 VSWNAIITGYAMHGLAVEALDLFERMMKEAQPDHITFVGALAACSRGRLLDEGRALYNLM 386
Query: 268 VRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKL 327
VRD I+P+V+HYTCMVDLLGH G+LDEA DLI QM V PD GVWGALLNSCK HG+V+L
Sbjct: 387 VRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVEL 446
Query: 328 AELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKN 387
AE+ALEKLIELEP D+GNYVIL+N+YA++ WEGVA+LR+LMID+GIKK+IACSWIEVKN
Sbjct: 447 AEVALEKLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKN 506
Query: 388 KAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSER 447
K +AFLSGD SHPN IYA+LK LEG M+EAGYVP T SVFHDVE DEK +M+C HSER
Sbjct: 507 KVYAFLSGDVSHPNSGAIYAELKRLEGLMREAGYVPDTGSVFHDVEEDEKTDMVCSHSER 566
Query: 448 LAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICS 507
LAIAFGLI+T GTRLLITKNL+IC+DCH+AIKFISKITEREITVRDVNRYHHF+ G+CS
Sbjct: 567 LAIAFGLISTLPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFRHGLCS 626
Query: 508 CGDYW 512
CGDYW
Sbjct: 627 CGDYW 631
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis sativus] gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/545 (68%), Positives = 438/545 (80%), Gaps = 33/545 (6%)
Query: 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIEL 60
+G F+P+LATKLV+LY C+ L NAH LFDRI +RNLFLWNV+IR YAWNGPYE+AI L
Sbjct: 30 VGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWNGPYELAISL 89
Query: 61 YYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120
YY++ + GLVPD FTFPF LKACSALSA+EEG++IH+DVIR+ E+DVFVGAALIDMYAK
Sbjct: 90 YYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAK 149
Query: 121 CSCVVNARQVFDKILERD---------------------------------PSEATLVTV 147
C CV +ARQVFDKI ERD P+E T V
Sbjct: 150 CGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVIS 209
Query: 148 ISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV 207
I+ASAD LPQG+ELHG+SWRH FE N KVKTAL+DMYAK G V VAR+LFE L EKRV
Sbjct: 210 IAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRV 269
Query: 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESM 267
VSWNAMITGYAMHGH+ +ALDLF++MK +V PDHITFVGVL+ACS GGL +EG+M F SM
Sbjct: 270 VSWNAMITGYAMHGHANEALDLFKEMKGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSM 329
Query: 268 VRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKL 327
+ D++I P+VQHYTCM+DLLGH GRL+EA LIM+MRV+PD GVWGALL+SCK+HG+V++
Sbjct: 330 ISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEM 389
Query: 328 AELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKN 387
ELALEKL+ELEP D GNYVILSN+YA+A W+GVA+LR LM+++G+KKSIACSWIEV N
Sbjct: 390 GELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWIEVGN 449
Query: 388 KAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSER 447
K HAFLS D SHP + IYA+LK MKEAGY P SVFHDVE+DEK +M+ CHSER
Sbjct: 450 KVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAGYAPQVGSVFHDVEDDEKVDMVSCHSER 509
Query: 448 LAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICS 507
LAIAFGLI+T GT+LLI KNL+IC+DCH+AIKFISKITEREIT+RDVNRYHHFKDG+CS
Sbjct: 510 LAIAFGLISTSAGTKLLIIKNLRICEDCHVAIKFISKITEREITIRDVNRYHHFKDGVCS 569
Query: 508 CGDYW 512
CGD+W
Sbjct: 570 CGDFW 574
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula] gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/545 (68%), Positives = 435/545 (79%), Gaps = 33/545 (6%)
Query: 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIEL 60
+G ++ LATKLVHLY+ + L NA LFD+IP++NLFLWNVLIR YAWNGP++ AI L
Sbjct: 76 LGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIIL 135
Query: 61 YYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120
Y+++L+ GL PDNFT PF LKACSALSAI EGR IHE VI++ WE D+FVGAALIDMYAK
Sbjct: 136 YHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAK 195
Query: 121 CSCVVNARQVFDKILERD---------------------------------PSEATLVTV 147
C CV++A +VFDKI+ RD P+EATLVTV
Sbjct: 196 CGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTV 255
Query: 148 ISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV 207
IS+SAD+A LP GRE+HGF WRH F+ N KVKTAL+DMYAKCG VKVA LFE+LREKRV
Sbjct: 256 ISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRV 315
Query: 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESM 267
VSWNA+ITGYAMHG + ALDLF+KM+ E +PDHITFVGVL+ACSRG L DEGR + M
Sbjct: 316 VSWNAIITGYAMHGLAVGALDLFDKMRKEDRPDHITFVGVLAACSRGRLLDEGRALYNLM 375
Query: 268 VRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKL 327
VRDY I P+VQHYTCM+DLLGH G+LDEA DLI M VKPD GVWGALLNSCK+HG+V+L
Sbjct: 376 VRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVEL 435
Query: 328 AELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKN 387
AELALEKLIELEP D+GNYVIL+N+YA++ WEGV KLR++MID+ IKK+IACSWIEVKN
Sbjct: 436 AELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKN 495
Query: 388 KAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSER 447
K +AFL+GD SH N D IYA+LK LEG M EAGY P T SVFHDVE DEK +M+C HSER
Sbjct: 496 KVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFHDVEEDEKTSMVCSHSER 555
Query: 448 LAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICS 507
LAIAFGLI+T GTRLLITKNL+IC+DCH+AIKFISKI EREITVRDVNRYH FK G+CS
Sbjct: 556 LAIAFGLISTSPGTRLLITKNLRICEDCHVAIKFISKIMEREITVRDVNRYHSFKHGMCS 615
Query: 508 CGDYW 512
CGD+W
Sbjct: 616 CGDHW 620
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/511 (65%), Positives = 381/511 (74%), Gaps = 65/511 (12%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
GFGF V+ATKLV+LY CD L +A LFDRIP+ N+FLWNVLIR YAWNGPYE A++LY
Sbjct: 105 GFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLY 164
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
Y++ + GLVPDNFTFPF LKAC+ALSAIE GR IHE V++ WE DVFVGAALIDMYAKC
Sbjct: 165 YQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKC 224
Query: 122 SCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTA 181
CV +AR+VFDKIL RD A LV SW A
Sbjct: 225 GCVGSAREVFDKILVRD---AVLVV--------------------SW-----------NA 250
Query: 182 LVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDH 241
++ YA G A +LFE+ M +PDH
Sbjct: 251 MITGYAMHGHATEALDLFEE-------------------------------MNRVAKPDH 279
Query: 242 ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIM 301
ITFVGVLSACS GGL +EG MFFE+M+RDY IDP+VQHYTCMVDLLGHSGRLDEA +LIM
Sbjct: 280 ITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIM 339
Query: 302 QMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEG 361
QM+V PD GVWGALLNSCK+H +V+L E+ALE+LIELEP DAGNYVILSNIYA+A WEG
Sbjct: 340 QMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEG 399
Query: 362 VAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGY 421
VAKLRKLM DR +KKSIACSWIEVKNK HAFLSGD SHP DEIY++L+ + G MKEAGY
Sbjct: 400 VAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGY 459
Query: 422 VPGTESVFHDVENDEKANMICCHSERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKF 481
P T SVFHDVE+DEKANM+C HSERLAIAFGLI+TP GTRLLITKNL+IC+DCH+AIKF
Sbjct: 460 SPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKF 519
Query: 482 ISKITEREITVRDVNRYHHFKDGICSCGDYW 512
ISKITEREITVRDVNRYHHFKDG+CSCGDYW
Sbjct: 520 ISKITEREITVRDVNRYHHFKDGVCSCGDYW 550
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/546 (58%), Positives = 399/546 (73%), Gaps = 35/546 (6%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
G G VL+TKLV LY+AC + +A +LFD +P+RN+FLWNVLIRAYA GP E A+ LY
Sbjct: 92 GLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLY 151
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
++E G+ PDNFT+P LKAC+AL +E GR +H+ V +W DVFV A ++DMYAKC
Sbjct: 152 RGMVEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKC 211
Query: 122 SCVVNARQVFDKILERD---------------------------------PSEATLVTVI 148
CV +AR VFD I RD P+ ATLV+ +
Sbjct: 212 GCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAV 271
Query: 149 SASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208
SA+AD AALP+GRELHGF WR F L K+KT+LVDMYAK G V+VAR LFEQL ++ +V
Sbjct: 272 SAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELV 331
Query: 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLFDEGRMFFES 266
SWNAMI GY MHGH+ +AL LF KMK + Q PD+ITFVGVLSAC+ GG+ +E + FF
Sbjct: 332 SWNAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYL 391
Query: 267 MVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVK 326
MV Y I P+VQHYTC++D+LGH+GR +EA DLI M ++PD G+WGALLN CK+H +V+
Sbjct: 392 MVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVE 451
Query: 327 LAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVK 386
L ELAL+KLIELEP DAGNYV LSNIYA++ WE A++RKLM +RG+KK +ACSWIE+K
Sbjct: 452 LGELALQKLIELEPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIELK 511
Query: 387 NKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSE 446
K H FL GDASHP DEIY +L+ LEG M +AGYVP VFH+V++DEK NM+ HSE
Sbjct: 512 GKTHGFLVGDASHPRSDEIYGELERLEGLMSDAGYVPDIIPVFHNVDDDEKRNMVRSHSE 571
Query: 447 RLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGIC 506
RLAIAFGLI+TP GT+LL+TKNL++C+DCH+ IK IS+I +REI +RDVNRYHHF +G C
Sbjct: 572 RLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGEC 631
Query: 507 SCGDYW 512
SC DYW
Sbjct: 632 SCKDYW 637
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust.
Identities = 324/546 (59%), Positives = 402/546 (73%), Gaps = 35/546 (6%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
G G VLATKLV LY+AC + +A +LFD +P+RN+FLWNVLIRAYA +GP+EVAI+LY
Sbjct: 92 GLGPDTVLATKLVDLYAACGLVGHARRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLY 151
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
+++ G+ PDNFT+P ALKAC+AL +E GR +HE V+ W D+FV A L+DMYAKC
Sbjct: 152 RGMVDYGVEPDNFTYPLALKACAALLDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKC 211
Query: 122 SCVVNARQVFDKILERD---------------------------------PSEATLVTVI 148
CV +AR VFD+I RD P+ ATLV+ I
Sbjct: 212 GCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTI 271
Query: 149 SASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208
SA+AD AALP+GRELHGF WR F+ K+KT+LVDMYAK G V+VAR LFEQL ++ +V
Sbjct: 272 SAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELV 331
Query: 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLFDEGRMFFES 266
SWNAMI GY MHGH +AL LF KM+ E Q PD+ITFVGVLSAC+ GG+ E + FF
Sbjct: 332 SWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGL 391
Query: 267 MVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVK 326
MV Y I P+VQH+TC+VD+LGH+GR +EA DLI M ++PD G+WGALLN CK+H +V+
Sbjct: 392 MVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVE 451
Query: 327 LAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVK 386
L ELAL+KLIELEP DAGNYV+LSNIYA++ WE A++RKLM +RG+KK I CSWIE+K
Sbjct: 452 LGELALQKLIELEPEDAGNYVLLSNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIELK 511
Query: 387 NKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSE 446
K H FL GDASHP EIY +L+ LEG M +AGY+P T VFHDV +DEK NM+ HSE
Sbjct: 512 GKTHGFLVGDASHPRSAEIYEELERLEGLMSDAGYMPDTMPVFHDVGDDEKRNMMRSHSE 571
Query: 447 RLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGIC 506
RLAIAFGLI+TP GT+LL+TKNL++C+DCH+ IK IS+I +REI +RDVNRYHHF +G C
Sbjct: 572 RLAIAFGLISTPSGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGEC 631
Query: 507 SCGDYW 512
SC DYW
Sbjct: 632 SCKDYW 637
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor] gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 318/548 (58%), Positives = 393/548 (71%), Gaps = 37/548 (6%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIP-QRNLFLWNVLIRAYAWNGPYEVAIEL 60
G G VLAT+LV LY++C + A +LFD +P Q N+FLWNVLIRAYA +GP E AIEL
Sbjct: 93 GLGLDAVLATRLVDLYASCGLVSVARRLFDEMPNQGNVFLWNVLIRAYARDGPREAAIEL 152
Query: 61 YYRLLEIG-LVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYA 119
Y +L G + PDNFT+P LKAC+AL + GR +H+ V+R W DVFV A LIDMYA
Sbjct: 153 YREMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYA 212
Query: 120 KCSCVVNARQVFDKILERD----------------PSEA--------------TLVTVIS 149
KC CV A VFD RD P+EA T+VT++S
Sbjct: 213 KCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVS 272
Query: 150 ---ASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR 206
A+AD ALP+GRELHG+ WR F K+KT+L+DMYAK G V VAR LF+QL +
Sbjct: 273 AISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRE 332
Query: 207 VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLFDEGRMFF 264
++SWNAMI G+ MHGH+ A +LF +M++E Q PDHITFVGVLSAC+ GG+ E + F
Sbjct: 333 LISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVF 392
Query: 265 ESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGH 324
+ MV Y I P VQHYTC+VD+LGHSGR EA D+I M VKPD G+WGALLN CK+H +
Sbjct: 393 DLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKN 452
Query: 325 VKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIE 384
V+LAELAL KLIELEP DAGNYV+LSNIYA++ WE A++RKLM +RG+KK IACSWIE
Sbjct: 453 VELAELALHKLIELEPEDAGNYVLLSNIYAQSGKWEEAARVRKLMTNRGLKKIIACSWIE 512
Query: 385 VKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCH 444
+K K+H FL GDASHP DEIY +L+ LEG + + GYVP T SVFH+VE+DEK NM+ H
Sbjct: 513 LKGKSHGFLVGDASHPRSDEIYEELERLEGLISQTGYVPDTTSVFHNVEDDEKRNMVRGH 572
Query: 445 SERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDG 504
SERLAIAFGLI+TP GT+LL+TKNL++C+DCH+ IK IS+I +REI +RDVNRYHHF +G
Sbjct: 573 SERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNG 632
Query: 505 ICSCGDYW 512
CSC D+W
Sbjct: 633 ECSCKDHW 640
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 311/548 (56%), Positives = 387/548 (70%), Gaps = 37/548 (6%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIP-QRNLFLWNVLIRAYAWNGPYEVAIEL 60
G G VLAT+LV LY++C + A ++FD +P Q N+FLWNVLIRAYA +GP E AIEL
Sbjct: 98 GTGLDAVLATRLVDLYASCGHVSLARRVFDEMPNQGNVFLWNVLIRAYARDGPCEAAIEL 157
Query: 61 YYRLLEIG-LVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYA 119
Y +L G + PDNFT+P LKAC+AL + GR +H+ V+R W TDVFV LIDMYA
Sbjct: 158 YRAMLAYGSMKPDNFTYPPVLKACAALLDLSAGREVHDRVMRTNWATDVFVCTGLIDMYA 217
Query: 120 KCSCVVNARQVFDKILERD---------------------------------PSEATLVT 146
KC C+ A VF+ RD P+ ATLV+
Sbjct: 218 KCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQNGRPAEALTLCRNMAAEGIAPTIATLVS 277
Query: 147 VISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR 206
ISA+A +ALP+GRELHG+ WR F K+KT+L+DMYAK G V VA LFEQL +
Sbjct: 278 AISAAAVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVMVAHVLFEQLLHRE 337
Query: 207 VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLFDEGRMFF 264
++SWNAMI G+ MHGH+ A +LF +M+ E Q PDHITFVGVLSAC+ GG+ E + F
Sbjct: 338 LISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGVLSACNHGGMVQEAKEVF 397
Query: 265 ESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGH 324
+ MV Y I P+VQHYTC+VD+LGHSGR EA D+I M VKPD G+WGALLN CK+H +
Sbjct: 398 DLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKN 457
Query: 325 VKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIE 384
V+LAELAL+KLIELEP DAGNYV+LSNIYA + WE A++RKLM +RG+KK IACSWIE
Sbjct: 458 VELAELALQKLIELEPEDAGNYVLLSNIYAESGKWEEAARVRKLMTNRGLKKIIACSWIE 517
Query: 385 VKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCH 444
+K K H FL GDASHP D+IY +L+ LEG + + GYVP T VFH+VE+DEK NM+ H
Sbjct: 518 LKGKFHGFLVGDASHPRSDDIYEELERLEGLISQTGYVPDTTPVFHNVEDDEKRNMVWGH 577
Query: 445 SERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDG 504
SERLAIAFGLI+TP T+LL+TKNL++C+DCH+ IK IS+I +REI +RDVNRYHHF +G
Sbjct: 578 SERLAIAFGLISTPPRTKLLVTKNLRVCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNG 637
Query: 505 ICSCGDYW 512
CSC D+W
Sbjct: 638 ECSCKDHW 645
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis] | Back alignment and taxonomy information |
|---|
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/539 (43%), Positives = 341/539 (63%), Gaps = 34/539 (6%)
Query: 8 VLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEI 67
++ LV++Y+ C ++ AH+LF+R+P R++ WN +I Y+ N + A+ + R+
Sbjct: 257 LVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVR 316
Query: 68 GLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNA 127
G+ P++ T L AC+ L A+E+G++IH IR+ +E++ VG AL++MYAKC V +A
Sbjct: 317 GIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSA 376
Query: 128 RQVFDKILERD---------------------------------PSEATLVTVISASADI 154
++F+++ +++ P +V+V+ A A
Sbjct: 377 YKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHF 436
Query: 155 AALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMI 214
AL QG+++HG++ R FE NV V T LVD+YAKCG V A+ LFE++ E+ VVSW MI
Sbjct: 437 LALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMI 496
Query: 215 TGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHI 273
Y +HGH AL LF KM++ + DHI F +L+ACS GL D+G +F+ M DY +
Sbjct: 497 LAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGL 556
Query: 274 DPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALE 333
P ++HY C+VDLLG +G LDEA +I M ++PD VWGALL +C++H +++L E A +
Sbjct: 557 APKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAK 616
Query: 334 KLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFL 393
L EL+P +AG YV+LSNIYA A WE VAKLRK+M ++G+KK CS + V FL
Sbjct: 617 HLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFL 676
Query: 394 SGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFG 453
GD +HP ++IYA L+ L +M++AGYVP T DVE + K N++ HSE+LAI+FG
Sbjct: 677 VGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFG 736
Query: 454 LINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
+INT G + I KNL++C DCH A KFISKI REI VRD NR+HH K+G CSCGDYW
Sbjct: 737 IINTSPGIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795
|
Source: Picea sitchensis Species: Picea sitchensis Genus: Picea Family: Pinaceae Order: Coniferales Class: Coniferopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 512 | ||||||
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.779 | 0.493 | 0.459 | 4.1e-119 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.792 | 0.493 | 0.458 | 4.8e-114 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.779 | 0.617 | 0.415 | 1e-107 | |
| TAIR|locus:2149664 | 588 | MEF1 "mitochondrial RNA editin | 0.714 | 0.622 | 0.442 | 1.1e-105 | |
| TAIR|locus:2130389 | 684 | LOI1 "lovastatin insensitive 1 | 0.732 | 0.548 | 0.425 | 1.4e-101 | |
| TAIR|locus:2183931 | 822 | AT5G13230 [Arabidopsis thalian | 0.728 | 0.453 | 0.421 | 4.6e-101 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.962 | 0.631 | 0.403 | 6.2e-101 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.716 | 0.368 | 0.454 | 8.6e-100 | |
| TAIR|locus:2102852 | 657 | CRR2 "AT3G46790" [Arabidopsis | 0.783 | 0.610 | 0.448 | 3.1e-99 | |
| TAIR|locus:2198546 | 760 | AT1G20230 "AT1G20230" [Arabido | 0.730 | 0.492 | 0.464 | 1.2e-98 |
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 944 (337.4 bits), Expect = 4.1e-119, Sum P(2) = 4.1e-119
Identities = 185/403 (45%), Positives = 261/403 (64%)
Query: 113 ALIDMYAKCSCVVNARQVFDKILERD--PSEATLVTVISASADIAALPQGRELHGFSWRH 170
A+I +A+ ++A F ++ R P T V+VI+A A+++ + +HG R
Sbjct: 408 AMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRS 467
Query: 171 RFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLF 230
+ NV V TALVDMYAKCG + +AR +F+ + E+ V +WNAMI GY HG AL+LF
Sbjct: 468 CLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELF 527
Query: 231 EKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGH 289
E+M K ++P+ +TF+ V+SACS GL + G F M +Y I+ S+ HY MVDLLG
Sbjct: 528 EEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGR 587
Query: 290 SGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVXXXXXXXXXXXXXXPHDAGNYVIL 349
+GRL+EA D IMQM VKP V+GA+L +C++H +V P D G +V+L
Sbjct: 588 AGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLL 647
Query: 350 SNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKL 409
+NIY A+ WE V ++R M+ +G++K+ CS +E+KN+ H+F SG +HP+ +IYA L
Sbjct: 648 ANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFL 707
Query: 410 KWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLINTPDGTRLLITKNL 469
+ L +KEAGYVP T V VEND K ++ HSE+LAI+FGL+NT GT + + KNL
Sbjct: 708 EKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNL 766
Query: 470 KICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
++C DCH A K+IS +T REI VRD+ R+HHFK+G CSCGDYW
Sbjct: 767 RVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 955 (341.2 bits), Expect = 4.8e-114, Sum P(2) = 4.8e-114
Identities = 189/412 (45%), Positives = 263/412 (63%)
Query: 106 TDVFVGAALIDMYAKCSCVVNARQVFDKILERD----PSEATLVTVISASADIAALPQGR 161
TDV +I YA+ A ++++ I+E + ++ T V+V+ A + AL QG
Sbjct: 413 TDVISWNTIISGYAQNGFASEAIEMYN-IMEEEGEIAANQGTWVSVLPACSQAGALRQGM 471
Query: 162 ELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHG 221
+LHG ++ L+V V T+L DMY KCG ++ A +LF Q+ V WN +I + HG
Sbjct: 472 KLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHG 531
Query: 222 HSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHY 280
H KA+ LF++M DE V+PDHITFV +LSACS GL DEG+ FE M DY I PS++HY
Sbjct: 532 HGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHY 591
Query: 281 TCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVXXXXXXXXXXXXXXP 340
CMVD+ G +G+L+ A I M ++PD +WGALL++C++HG+V P
Sbjct: 592 GCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEP 651
Query: 341 HDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHP 400
G +V+LSN+YA A WEGV ++R + +G++K+ S +EV NK F +G+ +HP
Sbjct: 652 EHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHP 711
Query: 401 NCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLINTPDG 460
+E+Y +L L+ ++K GYVP V DVE+DEK +++ HSERLAIAF LI TP
Sbjct: 712 MYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAK 771
Query: 461 TRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
T + I KNL++C DCH KFISKITEREI VRD NR+HHFK+G+CSCGDYW
Sbjct: 772 TTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 869 (311.0 bits), Expect = 1.0e-107, Sum P(2) = 1.0e-107
Identities = 167/402 (41%), Positives = 257/402 (63%)
Query: 114 LIDMYAKCSCVVNARQVFDKILERD--PSEATLVTVISASADIAALPQGRELHGFSWRHR 171
+I Y+ +A +VF ++ + D P+ TLV+V+ A + + +L G LH ++
Sbjct: 245 MISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSG 304
Query: 172 FELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFE 231
++ + +AL+DMY+KCG+++ A ++FE+L + V++W+AMI G+A+HG + A+D F
Sbjct: 305 IRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFC 364
Query: 232 KMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHS 290
KM+ V+P + ++ +L+ACS GGL +EGR +F MV ++P ++HY CMVDLLG S
Sbjct: 365 KMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRS 424
Query: 291 GRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVXXXXXXXXXXXXXXPHDAGNYVILS 350
G LDEA + I+ M +KPD +W ALL +C++ G+V PHD+G YV LS
Sbjct: 425 GLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALS 484
Query: 351 NIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLK 410
N+YA NW V+++R M ++ I+K CS I++ H F+ D SHP EI + L
Sbjct: 485 NMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLV 544
Query: 411 WLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLINTPDGTRLLITKNLK 470
+ +++ AGY P T V ++E ++K N++ HSE++A AFGLI+T G + I KNL+
Sbjct: 545 EISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLR 604
Query: 471 ICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
IC+DCH +IK ISK+ +R+ITVRD R+HHF+DG CSC DYW
Sbjct: 605 ICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
|
|
| TAIR|locus:2149664 MEF1 "mitochondrial RNA editing factor 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 840 (300.8 bits), Expect = 1.1e-105, Sum P(2) = 1.1e-105
Identities = 163/368 (44%), Positives = 227/368 (61%)
Query: 146 TVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK 205
+VIS A+ L GR++HG S + F+ + V ++LV +Y+KCG+ + A +F ++ K
Sbjct: 222 SVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVK 281
Query: 206 RVVSWNAMITGYAMHGHSTKALDLFEKMK-DEVQPDHITFVGVLSACSRGGLFDEGRMFF 264
+ WNAM+ YA H H+ K ++LF++MK ++P+ ITF+ VL+ACS GL DEGR +F
Sbjct: 282 NLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYF 341
Query: 265 ESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGH 324
+ M ++ I+P+ +HY +VD+LG +GRL EA ++I M + P VWGALL SC +H +
Sbjct: 342 DQM-KESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKN 400
Query: 325 VXXXXXXXXXXXXXXPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIE 384
P +G ++ LSN YA +E AK RKL+ DRG KK SW+E
Sbjct: 401 TELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVE 460
Query: 385 VKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCH 444
+NK H F +G+ H EIY KL L M++AGY+ T V +V+ DEK I H
Sbjct: 461 ERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYH 520
Query: 445 SERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDG 504
SERLAIAFGLI P + + KNL++C DCH AIKF+S T R I VRD NR+H F+DG
Sbjct: 521 SERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDG 580
Query: 505 ICSCGDYW 512
CSC DYW
Sbjct: 581 KCSCNDYW 588
|
|
| TAIR|locus:2130389 LOI1 "lovastatin insensitive 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 810 (290.2 bits), Expect = 1.4e-101, Sum P(2) = 1.4e-101
Identities = 161/378 (42%), Positives = 228/378 (60%)
Query: 138 DPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARN 197
+ S+ + +V+SA A +A L GR +H + + E + V +ALVDMY KCG ++ +
Sbjct: 307 ETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQ 366
Query: 198 LFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE---VQPDHITFVGVLSACSRG 254
F+++ EK +V+ N++I GYA G AL LFE+M P+++TFV +LSACSR
Sbjct: 367 AFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRA 426
Query: 255 GLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGA 314
G + G F+SM Y I+P +HY+C+VD+LG +G ++ A + I +M ++P VWGA
Sbjct: 427 GAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGA 486
Query: 315 LLNSCKLHGHVXXXXXXXXXXXXXXPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374
L N+C++HG P D+GN+V+LSN +A A W +R+ + GI
Sbjct: 487 LQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGI 546
Query: 375 KKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVEN 434
KK SWI VKN+ HAF + D SH EI L L M+ AGY P + +D+E
Sbjct: 547 KKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEE 606
Query: 435 DEKANMICCHSERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRD 494
+EKA + HSE+LA+AFGL++ P + ITKNL+IC DCH KF+S +REI VRD
Sbjct: 607 EEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRD 666
Query: 495 VNRYHHFKDGICSCGDYW 512
NR+H FKDGICSC DYW
Sbjct: 667 NNRFHRFKDGICSCKDYW 684
|
|
| TAIR|locus:2183931 AT5G13230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 842 (301.5 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 158/375 (42%), Positives = 234/375 (62%)
Query: 140 SEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLF 199
+E T + + A A +A++ G ++HG + + V V +L+DMYAKCG +K A+++F
Sbjct: 448 TEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVF 507
Query: 200 EQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKD-EVQPDHITFVGVLSACSRGGLFD 258
++ V SWNA+I+GY+ HG +AL + + MKD + +P+ +TF+GVLS CS GL D
Sbjct: 508 NEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLID 567
Query: 259 EGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNS 318
+G+ FESM+RD+ I+P ++HYTCMV LLG SG+LD+A LI + +P +W A+L++
Sbjct: 568 QGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSA 627
Query: 319 CKLHGHVXXXXXXXXXXXXXXPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSI 378
+ P D YV++SN+YA A W VA +RK M + G+KK
Sbjct: 628 SMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEP 687
Query: 379 ACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKA 438
SWIE + H F G + HP+ I L+WL + AGYVP +V D++++EK
Sbjct: 688 GLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKD 747
Query: 439 NMICCHSERLAIAFGLINTPDG-TRLLITKNLKICDDCHIAIKFISKITEREITVRDVNR 497
+ HSERLA+A+GL+ P R+LI KNL+IC DCH A+K IS I +R++ +RD+NR
Sbjct: 748 KRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNR 807
Query: 498 YHHFKDGICSCGDYW 512
+HHF G+CSCGD+W
Sbjct: 808 FHHFHAGVCSCGDHW 822
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
Identities = 204/506 (40%), Positives = 301/506 (59%)
Query: 11 TKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLV 70
T +V Y + A +LFD++P+RN WN ++ Y E+A EL+ ++
Sbjct: 285 TAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELF----DVMPC 340
Query: 71 PDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQV 130
+ T+ + + I E + + + + + D AA+I Y++ A ++
Sbjct: 341 RNVSTWNTMITGYAQCGKISEAKNLFDKMPKR----DPVSWAAMIAGYSQSGHSFEALRL 396
Query: 131 FDKILERDP---SEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYA 187
F + +ER+ + ++ + +S AD+ AL G++LHG + +E V AL+ MY
Sbjct: 397 FVQ-MEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYC 455
Query: 188 KCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVG 246
KCG ++ A +LF+++ K +VSWN MI GY+ HG AL FE MK E ++PD T V
Sbjct: 456 KCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVA 515
Query: 247 VLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVK 306
VLSACS GL D+GR +F +M +DY + P+ QHY CMVDLLG +G L++A +L+ M +
Sbjct: 516 VLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFE 575
Query: 307 PDPGVWGALLNSCKLHGHVXXXXXXXXXXXXXXPHDAGNYVILSNIYARAANWEGVAKLR 366
PD +WG LL + ++HG+ P ++G YV+LSN+YA + W V KLR
Sbjct: 576 PDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLR 635
Query: 367 KLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTE 426
M D+G+KK SWIE++NK H F GD HP DEI+A L+ L+ RMK+AGYV T
Sbjct: 636 VRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTS 695
Query: 427 SVFHDVENDEKANMICCHSERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKIT 486
V HDVE +EK M+ HSERLA+A+G++ G + + KNL++C+DCH AIK++++IT
Sbjct: 696 VVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARIT 755
Query: 487 EREITVRDVNRYHHFKDGICSCGDYW 512
R I +RD NR+HHFKDG CSCGDYW
Sbjct: 756 GRLIILRDNNRFHHFKDGSCSCGDYW 781
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 861 (308.1 bits), Expect = 8.6e-100, Sum P(2) = 8.6e-100
Identities = 169/372 (45%), Positives = 231/372 (62%)
Query: 146 TVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK 205
TV+SA A +A L +G E+H S R E +V V +ALVDMY+KCG + A F + +
Sbjct: 624 TVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVR 683
Query: 206 RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLFDEGRMF 263
SWN+MI+GYA HG +AL LFE MK + Q PDH+TFVGVLSACS GL +EG
Sbjct: 684 NSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKH 743
Query: 264 FESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSC-KLH 322
FESM Y + P ++H++CM D+LG +G LD+ D I +M +KP+ +W +L +C + +
Sbjct: 744 FESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRAN 803
Query: 323 GH-VXXXXXXXXXXXXXXPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACS 381
G P +A NYV+L N+YA WE + K RK M D +KK S
Sbjct: 804 GRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYS 863
Query: 382 WIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMI 441
W+ +K+ H F++GD SHP+ D IY KLK L +M++AGYVP T +D+E + K ++
Sbjct: 864 WVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEIL 923
Query: 442 CCHSERLAIAFGLINTPDGTR-LLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHH 500
HSE+LA+AF L T + I KNL++C DCH A K+ISKI R+I +RD NR+HH
Sbjct: 924 SYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHH 983
Query: 501 FKDGICSCGDYW 512
F+DG CSC D+W
Sbjct: 984 FQDGACSCSDFW 995
|
|
| TAIR|locus:2102852 CRR2 "AT3G46790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
Identities = 182/406 (44%), Positives = 273/406 (67%)
Query: 112 AALIDMYAKCSCVVNARQVFDKILE--RD--PSEATLVTVISASADIAALPQGRELHGFS 167
+A+I YAK A + F +++ +D P+ T+V+V+ A A +AAL QG+ +HG+
Sbjct: 252 SAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYI 311
Query: 168 WRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKAL 227
R + + V +ALV MY +CG ++V + +F+++ ++ VVSWN++I+ Y +HG+ KA+
Sbjct: 312 LRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAI 371
Query: 228 DLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDL 286
+FE+M + P +TFV VL ACS GL +EG+ FE+M RD+ I P ++HY CMVDL
Sbjct: 372 QIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDL 431
Query: 287 LGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVXXXXXXXXXXXXXXPHDAGNY 346
LG + RLDEA ++ MR +P P VWG+LL SC++HG+V P +AGNY
Sbjct: 432 LGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNY 491
Query: 347 VILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIY 406
V+L++IYA A W+ V +++KL+ RG++K W+EV+ K ++F+S D +P ++I+
Sbjct: 492 VLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIH 551
Query: 407 AKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLINTPDGTRLLIT 466
A L L MKE GY+P T+ V +++E +EK ++ HSE+LA+AFGLINT G + IT
Sbjct: 552 AFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRIT 611
Query: 467 KNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
KNL++C+DCH+ KFISK E+EI VRDVNR+H FK+G+CSCGDYW
Sbjct: 612 KNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
|
|
| TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 959 (342.6 bits), Expect = 1.2e-98, Sum P(2) = 1.2e-98
Identities = 174/375 (46%), Positives = 245/375 (65%)
Query: 139 PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNL 198
P+ T+ +++ A +IAAL GR HGF+ R NV V +AL+DMYAKCG + +++ +
Sbjct: 386 PNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIV 445
Query: 199 FEQLREKRVVSWNAMITGYAMHGHSTKALDLFEK-MKDEVQPDHITFVGVLSACSRGGLF 257
F + K +V WN+++ G++MHG + + + +FE M+ ++PD I+F +LSAC + GL
Sbjct: 446 FNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLT 505
Query: 258 DEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLN 317
DEG +F+ M +Y I P ++HY+CMV+LLG +G+L EA DLI +M +PD VWGALLN
Sbjct: 506 DEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLN 565
Query: 318 SCKLHGHVXXXXXXXXXXXXXXPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKS 377
SC+L +V P + G YV+LSNIYA W V +R M G+KK+
Sbjct: 566 SCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKN 625
Query: 378 IACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEK 437
CSWI+VKN+ + L+GD SHP D+I K+ + M+++G+ P + HDVE E+
Sbjct: 626 PGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQ 685
Query: 438 ANMICCHSERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNR 497
M+ HSE+LA+ FGL+NTPDGT L + KNL+IC DCH IKFIS REI +RD NR
Sbjct: 686 EQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNR 745
Query: 498 YHHFKDGICSCGDYW 512
+HHFKDGICSCGD+W
Sbjct: 746 FHHFKDGICSCGDFW 760
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 512 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-156 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-154 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-52 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-42 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-32 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-29 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 5e-25 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-10 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-04 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 466 bits (1201), Expect = e-156
Identities = 219/543 (40%), Positives = 311/543 (57%), Gaps = 37/543 (6%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
GF + L+ +Y + A ++F R+ ++ W +I Y NG + A+E Y
Sbjct: 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETY 377
Query: 62 YRLLEI-GLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120
L+E + PD T L AC+ L ++ G ++HE R + V V ALI+MY+K
Sbjct: 378 -ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436
Query: 121 CSCVVNARQVFDKILERD--------------------------------PSEATLVTVI 148
C C+ A +VF I E+D P+ TL+ +
Sbjct: 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAAL 496
Query: 149 SASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208
SA A I AL G+E+H R + + AL+D+Y +CG + A N F EK VV
Sbjct: 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVV 555
Query: 209 SWNAMITGYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESM 267
SWN ++TGY HG + A++LF +M + V PD +TF+ +L ACSR G+ +G +F SM
Sbjct: 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615
Query: 268 VRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKL 327
Y I P+++HY C+VDLLG +G+L EA + I +M + PDP VWGALLN+C++H HV+L
Sbjct: 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL 675
Query: 328 AELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKN 387
ELA + + EL+P+ G Y++L N+YA A W+ VA++RK M + G+ CSW+EVK
Sbjct: 676 GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKG 735
Query: 388 KAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSER 447
K HAFL+ D SHP EI L+ +MK +G S ++E K ++ C HSER
Sbjct: 736 KVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEV-SKDDIFCGHSER 794
Query: 448 LAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICS 507
LAIAFGLINT G + +TKNL +C++CH +KFISKI REI+VRD ++HHFKDG CS
Sbjct: 795 LAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECS 854
Query: 508 CGD 510
CGD
Sbjct: 855 CGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 456 bits (1175), Expect = e-154
Identities = 214/545 (39%), Positives = 307/545 (56%), Gaps = 36/545 (6%)
Query: 4 GFHPVLAT--KLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
GF P +++ ++ C L +A +LFD +P+RNL W +I G Y A L+
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF 212
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
+ E G + TF L+A + L + G+++H V++ D FV ALIDMY+KC
Sbjct: 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272
Query: 122 SCVVNARQVFDKILERD----------------PSEA-----------------TLVTVI 148
+ +AR VFD + E+ EA T +I
Sbjct: 273 GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332
Query: 149 SASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208
+ +A L ++ H R F L++ TALVD+Y+K G ++ ARN+F+++ K ++
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI 392
Query: 209 SWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESM 267
SWNA+I GY HG TKA+++FE+M E V P+H+TF+ VLSAC GL ++G F+SM
Sbjct: 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452
Query: 268 VRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKL 327
++ I P HY CM++LLG G LDEA +I + KP +W ALL +C++H +++L
Sbjct: 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLEL 512
Query: 328 AELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKN 387
LA EKL + P NYV+L N+Y + AK+ + + +G+ AC+WIEVK
Sbjct: 513 GRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKK 572
Query: 388 KAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSER 447
+ H+F SGD HP EIY KL L + E GYV + DV+ DE+ HSE+
Sbjct: 573 QDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEK 632
Query: 448 LAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICS 507
LAIAFGLINT + T L IT++ +IC DCH IKFI+ +T+REI VRD +R+HHFK G CS
Sbjct: 633 LAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCS 692
Query: 508 CGDYW 512
CGDYW
Sbjct: 693 CGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 191 bits (486), Expect = 1e-52
Identities = 109/334 (32%), Positives = 166/334 (49%), Gaps = 40/334 (11%)
Query: 25 NAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACS 84
+A +F ++P+R+LF WNVL+ YA G ++ A+ LY+R+L G+ PD +TFP L+ C
Sbjct: 139 HAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198
Query: 85 ALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKI---------- 134
+ + GR +H V+R +E DV V ALI MY KC VV+AR VFD++
Sbjct: 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNA 258
Query: 135 -----------------------LERDPSEATLVTVISASADIAALPQGRELHGFSWRHR 171
L DP T+ +VISA + GRE+HG+ +
Sbjct: 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318
Query: 172 FELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFE 231
F ++V V +L+ MY G A +F ++ K VSW AMI+GY +G KAL+ +
Sbjct: 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYA 378
Query: 232 KMK-DEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHS 290
M+ D V PD IT VLSAC+ G D G E R I V ++++
Sbjct: 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS-YVVVANALIEMYSKC 437
Query: 291 GRLDEACDLIMQMRVKPDPGV--WGALLNSCKLH 322
+D+A ++ + P+ V W +++ +L+
Sbjct: 438 KCIDKALEVFHNI---PEKDVISWTSIIAGLRLN 468
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (405), Expect = 7e-42
Identities = 83/293 (28%), Positives = 135/293 (46%), Gaps = 33/293 (11%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
GF + L+ +Y C + +A +FDR+P+R+ WN +I Y NG +EL+
Sbjct: 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF 276
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
+ + E+ + PD T + AC L GR +H V++ + DV V +LI MY
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336
Query: 122 SCVVNARQVFDKILERD---------------------------------PSEATLVTVI 148
A +VF ++ +D P E T+ +V+
Sbjct: 337 GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396
Query: 149 SASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208
SA A + L G +LH + R V V AL++MY+KC + A +F + EK V+
Sbjct: 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456
Query: 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGR 261
SW ++I G ++ +AL F +M ++P+ +T + LSAC+R G G+
Sbjct: 457 SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGK 509
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 1e-32
Identities = 89/328 (27%), Positives = 156/328 (47%), Gaps = 39/328 (11%)
Query: 45 IRAYAWNGPYEVAIELYYRLLEIG--LVPDNFTFPFALKACSALSAIEEGRRIHEDVIRN 102
I G + A+EL+ +LE G T+ ++AC AL +I + ++ V +
Sbjct: 94 IEKLVACGRHREALELF-EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS 152
Query: 103 KWETDVFVGAALIDMYAKCSCVVNARQVFDKILER------------------------- 137
+E D ++ ++ M+ KC +++AR++FD++ ER
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF 212
Query: 138 --------DPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKC 189
D T V ++ ASA + + G++LH + + V AL+DMY+KC
Sbjct: 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272
Query: 190 GLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVL 248
G ++ AR +F+ + EK V+WN+M+ GYA+HG+S +AL L+ +M+D V D TF ++
Sbjct: 273 GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332
Query: 249 SACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPD 308
SR L + + ++R + T +VDL GR+++A ++ +M K +
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-N 390
Query: 309 PGVWGALLNSCKLHGHVKLAELALEKLI 336
W AL+ HG A E++I
Sbjct: 391 LISWNALIAGYGNHGRGTKAVEMFERMI 418
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 2e-29
Identities = 96/337 (28%), Positives = 151/337 (44%), Gaps = 47/337 (13%)
Query: 42 NVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIR 101
N +RA +G E A++L + E+ + D + + C A+EEG R+ +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 102 NKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD----------------------- 138
+ V +G A++ M+ + +V+A VF K+ ERD
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 139 ----------PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAK 188
P T V+ I L +GRE+H R FEL+V V AL+ MY K
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 189 CGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMK-DEVQPDHITFVGV 247
CG V AR +F+++ + +SWNAMI+GY +G + L+LF M+ V PD +T V
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 248 LSACSRGGLFDEG---RMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMR 304
+SAC L DE M + + +D SV ++ + G EA + +M
Sbjct: 295 ISAC--ELLGDERLGREMHGYVVKTGFAVDVSV--CNSLIQMYLSLGSWGEAEKVFSRME 350
Query: 305 VKPDPGVWGALLNSCKLHGHVKLAELALE--KLIELE 339
K D W A+++ + +G L + ALE L+E +
Sbjct: 351 TK-DAVSWTAMISGYEKNG---LPDKALETYALMEQD 383
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 5e-25
Identities = 52/130 (40%), Positives = 71/130 (54%), Gaps = 23/130 (17%)
Query: 380 CSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDE--- 436
C W E K LSGD SHP + L R+K G VP T+ + HDV+ +E
Sbjct: 3 CVWSEGK----KTLSGDGSHP------TSKEELFQRIKVEGVVPETKEIGHDVDAEEFRD 52
Query: 437 ---KANMICCHSERLAIAFGLINTPDGTRLLITKNLK-ICDDCHIAIKFISKITEREITV 492
K ++ H+E+ A+A+GL+ T I K LK +C DCH ++I+K T REI V
Sbjct: 53 NGIKGKLLASHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREIIV 106
Query: 493 RDVNRYHHFK 502
RD +R+HHFK
Sbjct: 107 RDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 9e-15
Identities = 36/101 (35%), Positives = 54/101 (53%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
GF V T LV LYS + +A +FDR+P++NL WN LI Y +G A+E++
Sbjct: 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMF 414
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRN 102
R++ G+ P++ TF L AC E+G I + + N
Sbjct: 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 2e-14
Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 173 ELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV----VSWNAMITGYAMHGHSTKALD 228
E NV AL+D A+ G V A + +R K V V +NA+I+ G +A D
Sbjct: 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563
Query: 229 LFEKMKDE---VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVD 285
+ +MK E + PDHIT ++ AC+ G D + ++ M+ +Y+I + + YT V+
Sbjct: 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ-MIHEYNIKGTPEVYTIAVN 622
Query: 286 LLGHSGRLDEACDLIMQMR---VKPDPGVWGALLNSCKLHGHVKLAELALEKL 335
G D A + M+ VKPD + AL++ GH + A E L
Sbjct: 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA---GHAGDLDKAFEIL 672
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 7e-10
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 207 VVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSR 253
VV++N +I GY G +AL LF +MK ++P+ T+ ++ +
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 8e-06
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 208 VSWNAMITGYAMHGHSTKALDLFEKMKDE 236
V++N++I+GY G +AL+LF++MK++
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 60/262 (22%), Positives = 103/262 (39%), Gaps = 43/262 (16%)
Query: 44 LIRAYAWNGPYEVAIELYYRLLEIGL--VPDNFTFPFALKACSALSAIEEGRRIHEDVIR 101
L++A A G + A E+Y + E + P+ +T A+ +CS + I++D+ +
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI--AVNSCSQKGDWDFALSIYDDMKK 642
Query: 102 NKWETDVFVGAALIDMYAKCSCVVNARQVFDK---ILERDPSEATLVTVISASADIAALP 158
+ D +AL+D V DK IL+ + + +S S+ + A
Sbjct: 643 KGVKPDEVFFSALVD-------VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695
Query: 159 QGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYA 218
+ W+ EL +K+ +LR V + NA+IT
Sbjct: 696 NAKN-----WKKALELYEDIKSI-------------------KLRPT-VSTMNALITALC 730
Query: 219 MHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSV 277
KAL++ +MK + P+ IT+ +L A R D G D I P++
Sbjct: 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNL 789
Query: 278 QHYTCMVDLLGHSGRLDEACDL 299
C+ L R ++AC L
Sbjct: 790 VMCRCITGLCLR--RFEKACAL 809
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 208 VSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPD 240
V++N +I G G +AL+LF++MK+ ++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTF 76
++ +N LI Y G E A++L+ + + G+ P+ +T+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 512 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.85 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.73 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.7 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.62 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.61 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.58 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.57 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.55 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.54 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.54 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.53 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.5 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.5 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.48 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.46 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.44 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.44 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.44 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.41 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.38 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.35 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.35 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.34 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.33 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.31 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.31 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.29 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.27 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.26 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.26 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.24 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.21 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.2 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.19 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.14 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.13 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.12 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.11 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.1 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.09 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.04 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.96 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.96 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.95 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.94 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.94 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.94 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.91 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.91 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.89 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.89 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.89 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.88 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.82 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.81 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.8 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.78 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.76 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.73 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.72 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.67 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.66 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.65 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.65 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.64 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.6 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.59 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.59 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.59 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.58 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.57 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.56 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.55 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.55 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.54 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.54 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.53 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.53 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.52 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.5 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.49 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.49 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.48 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.41 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.4 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.39 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.38 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.38 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.37 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.36 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.33 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.3 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.27 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.24 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.24 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.24 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.2 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.2 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.2 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.2 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.19 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.17 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.17 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.15 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.15 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.02 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.97 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.92 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.91 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.9 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.9 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.89 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.88 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.83 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.79 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.77 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.76 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.75 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.74 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.74 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.71 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.69 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.68 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.66 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.64 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.6 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.59 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.58 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.56 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.55 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.52 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.52 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.51 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.5 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.49 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.48 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.48 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.47 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.42 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.38 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.36 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.36 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.35 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.34 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.31 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.3 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.26 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.23 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.22 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.21 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.21 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.16 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.13 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.13 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.12 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.12 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.12 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.11 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.1 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.05 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.96 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.93 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.91 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.9 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.9 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.89 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.88 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.86 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.85 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.85 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.84 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.76 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.75 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.74 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.72 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.62 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.62 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.5 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.42 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.29 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.26 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.2 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.17 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.09 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.06 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.99 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.94 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.83 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.81 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.75 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.74 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.71 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.67 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.61 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.58 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.52 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.5 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.48 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.41 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.35 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.34 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.25 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.2 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.14 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.12 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.12 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.1 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.97 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.96 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.95 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.92 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 94.86 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.84 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.7 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.63 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.61 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.52 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.52 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.51 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.43 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.43 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.34 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.34 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.18 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.17 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.13 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.1 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.09 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.9 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.53 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.28 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.28 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.16 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.11 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.9 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.86 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.68 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.45 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.43 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.34 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.21 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.94 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.83 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.81 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.78 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.7 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.45 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.4 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.36 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.19 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.18 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.99 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.91 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.77 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.63 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.55 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.36 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.92 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.87 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.48 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.31 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.08 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.08 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.91 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.5 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.32 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 87.84 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 87.61 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 87.49 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.39 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.12 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.09 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.31 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.22 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.92 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.64 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.4 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.86 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 84.8 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 84.62 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.41 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.94 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 83.91 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.85 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.42 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 83.3 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.26 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 83.1 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 83.01 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 82.94 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 82.31 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.27 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.12 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.99 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.8 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 81.46 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 81.41 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 81.39 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 81.29 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.94 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.79 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-109 Score=869.26 Aligned_cols=512 Identities=41% Similarity=0.725 Sum_probs=497.7
Q ss_pred CCCCCchhHHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHH
Q 043142 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFAL 80 (512)
Q Consensus 1 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 80 (512)
.|+.||+.++|.|+.+|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 152 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll 231 (697)
T PLN03081 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231 (697)
T ss_pred hCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHH
Confidence 38899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC----------------------
Q 043142 81 KACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD---------------------- 138 (512)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------------------- 138 (512)
.+|+..|..+.+.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|...+
T Consensus 232 ~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999988888888888888888888888888888887665
Q ss_pred -----------CChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc
Q 043142 139 -----------PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV 207 (512)
Q Consensus 139 -----------pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~ 207 (512)
||..||++++.+|++.|++++|.++|..|.+.|++||..++++|+++|+++|++++|.++|++|.++|+
T Consensus 312 lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~ 391 (697)
T PLN03081 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391 (697)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 043142 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDL 286 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 286 (512)
++||+||.+|+++|+.++|+++|++|.+.|+ ||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999998888999999999999999
Q ss_pred HhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHH
Q 043142 287 LGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 287 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (512)
|++.|++++|.+++++|+..|+..+|++|+.+|..+|+++.|..+++++.+.+|++..+|..|+++|++.|+|++|.+++
T Consensus 472 l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 472 LGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred HHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccCCceeeEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhHH
Q 043142 367 KLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSE 446 (512)
Q Consensus 367 ~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~ 446 (512)
+.|+++|+++.|++||+++++.+|.|++|+..||+.++|+..|.++..+|++.||.||+.+++|++++++++..+.+|||
T Consensus 552 ~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hse 631 (697)
T PLN03081 552 ETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSE 631 (697)
T ss_pred HHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccCCCCCCeEEEEeccccCCcchhHHHHHhhhcCceEEEeeCCcccccccccccCCCCC
Q 043142 447 RLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512 (512)
Q Consensus 447 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~d~~~~h~~~~g~csc~~~w 512 (512)
+||++||++.+|+|+||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+|||+|||
T Consensus 632 kla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 632 KLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-105 Score=854.07 Aligned_cols=508 Identities=42% Similarity=0.799 Sum_probs=496.1
Q ss_pred CCCCCchhHHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHH
Q 043142 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFAL 80 (512)
Q Consensus 1 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 80 (512)
.|+.||..+||+|+.+|+++|++++|.++|++|+.||+++||++|.+|++.|++++|+++|++|.+.|+.||..||++++
T Consensus 317 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll 396 (857)
T PLN03077 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396 (857)
T ss_pred hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC----------------------
Q 043142 81 KACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD---------------------- 138 (512)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------------------- 138 (512)
.+|++.|+++.|.++|+.+.+.|+.|+..+||+|+++|+++|++++|.++|++|.+.+
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~ 476 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALI 476 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998764
Q ss_pred ----------CChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCch
Q 043142 139 ----------PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208 (512)
Q Consensus 139 ----------pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~ 208 (512)
||..||+.++.+|++.|+++.+.++|..+.+.|+.++..++|+|+++|+++|++++|.++|+.+ .+|++
T Consensus 477 lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~ 555 (857)
T PLN03077 477 FFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVV 555 (857)
T ss_pred HHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChh
Confidence 8889999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLL 287 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 287 (512)
+||+||.+|+++|+.++|+++|++|.+.|+ ||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999987889999999999999999
Q ss_pred hccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHH
Q 043142 288 GHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRK 367 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (512)
++.|++++|.+++++|+++||..+|++|+.+|..+++.+.|+.+.+++.+++|+++..|..|+++|+..|+|++|.++++
T Consensus 636 ~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~ 715 (857)
T PLN03077 636 GRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRK 715 (857)
T ss_pred HhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccCCceeeEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhHHH
Q 043142 368 LMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSER 447 (512)
Q Consensus 368 ~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~ 447 (512)
.|+++|++++||+||+++++++|.|.+|+.+||+.++||..|+++..+|++.||.||+..++++ ++++|+..+++||||
T Consensus 716 ~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~-~~~~k~~~~~~hse~ 794 (857)
T PLN03077 716 TMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE-IEVSKDDIFCGHSER 794 (857)
T ss_pred HHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccc-cHHHHHHHHHhccHH
Confidence 9999999999999999999999999999999999999999999999999999999999988844 778899999999999
Q ss_pred HHHHHcccCCCCCCeEEEEeccccCCcchhHHHHHhhhcCceEEEeeCCcccccccccccCCC
Q 043142 448 LAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGD 510 (512)
Q Consensus 448 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~d~~~~h~~~~g~csc~~ 510 (512)
||++||++++|+++||||+||||+|+|||+++|+||++.+|+|||||.+|||||+||+|||+|
T Consensus 795 la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 795 LAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-65 Score=545.62 Aligned_cols=490 Identities=27% Similarity=0.416 Sum_probs=429.7
Q ss_pred CCCCchhHHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHH
Q 043142 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALK 81 (512)
Q Consensus 2 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 81 (512)
|..+++.++|+|+.+|+++|+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||.+||+.+++
T Consensus 116 ~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~ 195 (857)
T PLN03077 116 HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195 (857)
T ss_pred CCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 56688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC-----------------------
Q 043142 82 ACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD----------------------- 138 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------------------- 138 (512)
+|+..++++.+.++|..+++.|+.||..++|+|+++|+++|++++|.++|++|.+.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997654
Q ss_pred ----------CChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCch
Q 043142 139 ----------PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208 (512)
Q Consensus 139 ----------pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~ 208 (512)
||..||+.++.+|++.|+.+.|.+++..+.+.|+.||..+||+|+.+|+++|++++|.++|++|.++|++
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence 8888888888888888888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLL 287 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 287 (512)
+||+||.+|++.|++++|+++|++|.+.++ ||..||+.++.+|++.|++++|.++++.+.+ .|+.|+..+|++||++|
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER-KGLISYVVVANALIEMY 434 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH-hCCCcchHHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999965 59999999999999999
Q ss_pred hccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHH
Q 043142 288 GHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRK 367 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (512)
+++|++++|.++|++|+ ++|..+|++++.+|.+.|+.++|..+|++|.+.-++|..+|..++.+|++.|..+.+.+++.
T Consensus 435 ~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 435 SKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred HHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 99999999999999997 68999999999999999999999999999987656677788888877777777777777777
Q ss_pred HHHhCCCccCCce-----------------------------eeEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 043142 368 LMIDRGIKKSIAC-----------------------------SWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKE 418 (512)
Q Consensus 368 ~m~~~g~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 418 (512)
.|.+.|+.++... +|. .++.++..|++.+++. +++++|++
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n-------~lI~~~~~~G~~~~A~----~lf~~M~~ 582 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWN-------ILLTGYVAHGKGSMAV----ELFNRMVE 582 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHH-------HHHHHHHHcCCHHHHH----HHHHHHHH
Confidence 7777776544322 332 3456777788887774 78899999
Q ss_pred cCcccCCCccccccchhhhhhhh---hhhHHHHHHHHcccCCCCCCeEEEEeccccCCcchhHHHHHhhhcCc------e
Q 043142 419 AGYVPGTESVFHDVENDEKANMI---CCHSERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITER------E 489 (512)
Q Consensus 419 ~g~~pd~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~s~~~~~------~ 489 (512)
.|+.||..++...+..+.+.+.+ ....+.+...+|+.++..+.. ++++.+.++|+.++|.++|.+|+.+ .
T Consensus 583 ~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~ 661 (857)
T PLN03077 583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWG 661 (857)
T ss_pred cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHH
Confidence 99999998876666655544443 333455655788877665444 7999999999999999999999643 2
Q ss_pred EEEeeCCccccccccc
Q 043142 490 ITVRDVNRYHHFKDGI 505 (512)
Q Consensus 490 ~~~~d~~~~h~~~~g~ 505 (512)
.++..|+.+.+.+.|+
T Consensus 662 aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 662 ALLNACRIHRHVELGE 677 (857)
T ss_pred HHHHHHHHcCChHHHH
Confidence 2344555555555443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-60 Score=498.97 Aligned_cols=480 Identities=16% Similarity=0.205 Sum_probs=412.5
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 043142 4 GFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKAC 83 (512)
Q Consensus 4 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 83 (512)
.++...++.++..|.+.|.+++|.++|+.|+.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|
T Consensus 403 ~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y 482 (1060)
T PLN03218 403 DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTC 482 (1060)
T ss_pred CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 56778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC--CChhHHHHHHHHHhccCChHHHH
Q 043142 84 SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD--PSEATLVTVISASADIAALPQGR 161 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--pd~~t~~~ll~~~~~~~~~~~a~ 161 (512)
++.|+++.|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.+ ||..||+.++.+|++.|++++|.
T Consensus 483 ~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999998765 99999999999999999999999
Q ss_pred HHHHHHHH--cCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC----CchHHHHHHHHHHHcCChHHHHHHHHHhHH
Q 043142 162 ELHGFSWR--HRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK----RVVSWNAMITGYAMHGHSTKALDLFEKMKD 235 (512)
Q Consensus 162 ~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 235 (512)
++|++|.+ .|+.||..+|++|+.+|+++|++++|.++|+.|.+. +..+||++|.+|++.|++++|.++|++|.+
T Consensus 563 ~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999987 679999999999999999999999999999999865 458999999999999999999999999999
Q ss_pred CCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC---CCCCCHhH
Q 043142 236 EVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM---RVKPDPGV 311 (512)
Q Consensus 236 ~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~ 311 (512)
.|+ ||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++||.+|+++|++++|.++|++| +..||..+
T Consensus 643 ~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt 721 (1060)
T PLN03218 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 999 9999999999999999999999999999965 599999999999999999999999999999999 57899999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCceeeEEEC----
Q 043142 312 WGALLNSCKLHGHVKLAELALEKLIELE-PHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVK---- 386 (512)
Q Consensus 312 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~---- 386 (512)
|++|+.+|++.|++++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.+++++|.+.|+.|+.......++
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~ 801 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR 801 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999876 56778999999999999999999999999999999988743322111
Q ss_pred ---------CEEEEEEeCCCCCCChHHH-HHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhHHHHHHHHcccC
Q 043142 387 ---------NKAHAFLSGDASHPNCDEI-YAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLIN 456 (512)
Q Consensus 387 ---------~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 456 (512)
..+..|-.+ ++..... ......++++|.+.|+.||..++...+ .+.....-......+-..+++.+
T Consensus 802 ~y~ka~~l~~~v~~f~~g---~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 802 RFEKACALGEPVVSFDSG---RPQIENKWTSWALMVYRETISAGTLPTMEVLSQVL-GCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred HHHHHhhhhhhhhhhhcc---ccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhcccccHHHHHHHHHHhccCC
Confidence 011112111 1111111 122347899999999999987654443 22111111122344555677776
Q ss_pred CCCCCe--EEEEeccccCCcchhHHHHHhhhcCceE
Q 043142 457 TPDGTR--LLITKNLKICDDCHIAIKFISKITEREI 490 (512)
Q Consensus 457 ~~~~~~--~~~~~~~~~~~~~~~a~~~~s~~~~~~~ 490 (512)
.+++.. ..+++.+. ..-++|..++..|..+.|
T Consensus 878 ~~~~~~~y~~Li~g~~--~~~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 878 DSQKQSNLSTLVDGFG--EYDPRAFSLLEEAASLGV 911 (1060)
T ss_pred CCcchhhhHHHHHhhc--cChHHHHHHHHHHHHcCC
Confidence 666433 33556542 122579999999888754
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-58 Score=483.15 Aligned_cols=477 Identities=20% Similarity=0.290 Sum_probs=416.3
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHccCC-----CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 043142 5 FHPVLATKLVHLYSACDCLHNAHQLFDRIP-----QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFA 79 (512)
Q Consensus 5 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 79 (512)
.+...|+++|..|.+.|++++|.++|+.|. .||..+|+.++.++++.++++.|.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455689999999999999999999999985 368899999999999999999999999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC--CChhHHHHHHHHHhccCCh
Q 043142 80 LKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD--PSEATLVTVISASADIAAL 157 (512)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--pd~~t~~~ll~~~~~~~~~ 157 (512)
+.+|++.|+++.|.++|+.|. .||..+||+++.+|++.|++++|.++|++|.+.+ ||..||+.++.+|+..|+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999999999999999985 5899999999999999999999999999998765 8899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCC
Q 043142 158 PQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEV 237 (512)
Q Consensus 158 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 237 (512)
+.+.+++..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHH
Q 043142 238 Q-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALL 316 (512)
Q Consensus 238 ~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 316 (512)
+ ||..||+.++.+|++.|++++|.+++..|.+. |+.||..+|++||++|+++|++++|.++|++|. +||..+|++|+
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI 398 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALI 398 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHH
Confidence 9 99999999999999999999999999999755 999999999999999999999999999999997 68999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHhccChhHHHHHHHHHHh-CCCccCCceeeEEECCEEEEEEe
Q 043142 317 NSCKLHGHVKLAELALEKLIELE-PHDAGNYVILSNIYARAANWEGVAKLRKLMID-RGIKKSIACSWIEVKNKAHAFLS 394 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~~~~~~~~~~~~ 394 (512)
.+|+++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|.+ .|+.|+..... .++.
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~--------~li~ 470 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA--------CMIE 470 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH--------hHHH
Confidence 99999999999999999999877 56788999999999999999999999999976 68887764322 2455
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhh---hhhHHHHHHHHcccCCCCCCeEEEEecccc
Q 043142 395 GDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMI---CCHSERLAIAFGLINTPDGTRLLITKNLKI 471 (512)
Q Consensus 395 ~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~~~~~~~~~~~~ 471 (512)
+....++.++++. + +++.++.||...+..-+..+...+.+ ....++ .+++.+...++.+.+++.+..
T Consensus 471 ~l~r~G~~~eA~~----~---~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~---l~~~~p~~~~~y~~L~~~y~~ 540 (697)
T PLN03081 471 LLGREGLLDEAYA----M---IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK---LYGMGPEKLNNYVVLLNLYNS 540 (697)
T ss_pred HHHhcCCHHHHHH----H---HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH---HhCCCCCCCcchHHHHHHHHh
Confidence 6667777777753 3 34568888876433333332222211 111222 245555544566678888999
Q ss_pred CCcchhHHHHHhhhcCceEEE-------eeCCccccccccc
Q 043142 472 CDDCHIAIKFISKITEREITV-------RDVNRYHHFKDGI 505 (512)
Q Consensus 472 ~~~~~~a~~~~s~~~~~~~~~-------~d~~~~h~~~~g~ 505 (512)
+|+..+|.+++..|..+.+.. --.+..|.|-.|-
T Consensus 541 ~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 581 (697)
T PLN03081 541 SGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCC
Confidence 999999999999999885421 2224556676553
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-56 Score=469.29 Aligned_cols=375 Identities=14% Similarity=0.223 Sum_probs=355.0
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHccCC----CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 043142 4 GFHPVLATKLVHLYSACDCLHNAHQLFDRIP----QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFA 79 (512)
Q Consensus 4 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 79 (512)
.||..+||.|+.+|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4899999999999999999999999999996 479999999999999999999999999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhC----CCChhHHHHHHHHHhccC
Q 043142 80 LKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILER----DPSEATLVTVISASADIA 155 (512)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~pd~~t~~~ll~~~~~~~ 155 (512)
|.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|... .||..||+.++.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999763 599999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCchHHHHHHHHHHHcCChHHHHHHHH
Q 043142 156 ALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE----KRVVSWNAMITGYAMHGHSTKALDLFE 231 (512)
Q Consensus 156 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~ 231 (512)
++++|.++|+.|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|+
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999984 678999999999999999999999999
Q ss_pred HhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC---CCCC
Q 043142 232 KMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM---RVKP 307 (512)
Q Consensus 232 ~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p 307 (512)
+|.+.|. ||..+|+.|+.+|++.|++++|.++|+.|. ..|+.||..+|++||.+|++.|++++|.++|++| ++.|
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~-~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK-SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999 999999999999999999999999999996 4599999999999999999999999999999998 6889
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCchHHHHHHHHH----hcc-------------------ChhHHH
Q 043142 308 DPGVWGALLNSCKLHGHVKLAELALEKLIELE-PHDAGNYVILSNIYA----RAA-------------------NWEGVA 363 (512)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~----~~g-------------------~~~~a~ 363 (512)
|..||++++.+|.+.|++++|.+++++|.+.+ .++..+|..|+.+|. +++ ..++|.
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 99999999999999999999999999999977 557788999887643 222 236799
Q ss_pred HHHHHHHhCCCccCCc
Q 043142 364 KLRKLMIDRGIKKSIA 379 (512)
Q Consensus 364 ~~~~~m~~~g~~~~~~ 379 (512)
.+|++|.+.|+.|+..
T Consensus 833 ~lf~eM~~~Gi~Pd~~ 848 (1060)
T PLN03218 833 MVYRETISAGTLPTME 848 (1060)
T ss_pred HHHHHHHHCCCCCCHH
Confidence 9999999999998865
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-30 Score=199.54 Aligned_cols=106 Identities=66% Similarity=1.116 Sum_probs=95.8
Q ss_pred ceeeEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhh--------hhhhhhhHHHHHH
Q 043142 379 ACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEK--------ANMICCHSERLAI 450 (512)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~~~la~ 450 (512)
+++|+++ |.|++|+.+||+. .+..++...||.|++..++|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 5799876 8999999999997 456677889999999999998776654 5678999999999
Q ss_pred HHcccCCCCCCeEEEEecc-ccCCcchhHHHHHhhhcCceEEEeeCCcccccc
Q 043142 451 AFGLINTPDGTRLLITKNL-KICDDCHIAIKFISKITEREITVRDVNRYHHFK 502 (512)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~s~~~~~~~~~~d~~~~h~~~ 502 (512)
+||++++ +++||+ |+|+|||+++|+||++.+|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999987 899999 999999999999999999999999999999997
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-24 Score=232.86 Aligned_cols=362 Identities=13% Similarity=0.060 Sum_probs=249.5
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 043142 6 HPVLATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKA 82 (512)
Q Consensus 6 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 82 (512)
+...+..+...|.+.|++++|.+.|+++.. .+..++..+...+.+.|++++|...|+++...+ +.+...+..+...
T Consensus 498 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 576 (899)
T TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQY 576 (899)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHH
Confidence 455667777778888888888888877642 356677777777777888888888888776643 2244456667777
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHHhccCChHHHH
Q 043142 83 CSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS-EATLVTVISASADIAALPQGR 161 (512)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a~ 161 (512)
+...|++++|.++++.+.+.. +.+..+|..+...|.+.|++++|...|+++.+.+|+ ...+..+...+...|++++|.
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 777778888887777776654 556677777777777778888888877777776663 345666677777777777777
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC
Q 043142 162 ELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ 238 (512)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 238 (512)
..+..+.+.. +.+..++..++..+.+.|++++|.++++.+.+. +...|..+...+...|++++|+..|+++....+
T Consensus 656 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 734 (899)
T TIGR02917 656 TSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Confidence 7777777653 445667777777777777777777777776542 345566666777777777777777777766544
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCC-CCHhHHHHHH
Q 043142 239 PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK-PDPGVWGALL 316 (512)
Q Consensus 239 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll 316 (512)
+..++..+..++.+.|++++|...++.+.+. .+.+...+..+...|.+.|++++|...|+++ ... ++...++.+.
T Consensus 735 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 811 (899)
T TIGR02917 735 -SSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLA 811 (899)
T ss_pred -CchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2255556667777777777777777776643 1235666777777777777777777777666 222 3445666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
..+...|+ .+|+..++++.+..|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 812 ~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 812 WLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 67777776 6677777777777776666666677777777777777777777766554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-23 Score=226.24 Aligned_cols=363 Identities=14% Similarity=0.092 Sum_probs=270.8
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 043142 7 PVLATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKAC 83 (512)
Q Consensus 7 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 83 (512)
......++..|.+.|++++|.++++.+.. ++..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 431 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 509 (899)
T TIGR02917 431 GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARID 509 (899)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHH
Confidence 34556677778888888888888877643 356778888888888888888888888887643 12334566677777
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHH
Q 043142 84 SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRE 162 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~ 162 (512)
...|++++|.++++.+++.. +.+..++..+...|.+.|+.++|...|+++.+.+|+. ..+..+...+...|++++|..
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHH
Confidence 78888888888888887765 4567777778888888888888888888887766643 456667777788888888888
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCC
Q 043142 163 LHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQP 239 (512)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 239 (512)
+++.+.+.. +.+..++..+...|.+.|++++|...|+.+.+ .+...|..+...|.+.|++++|...|+++....+.
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 667 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPD 667 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 888777643 45667778888888888888888888877653 23566777777788888888888888887776666
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHhHHHHHHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGVWGALLNS 318 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~ 318 (512)
+..++..+...+...|++++|..+++.+.+. ..++...+..+...+.+.|++++|.+.++++ ...|+..++..+...
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 745 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRA 745 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHH
Confidence 6777777778888888888888888877643 1335666777777788888888888888776 345666677777777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 319 CKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
+...|++++|.+.++++++..|+++..+..++..|...|++++|.++|+++.+...
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 78888888888888888887787777777888888888888888888887776543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-21 Score=183.64 Aligned_cols=360 Identities=16% Similarity=0.177 Sum_probs=312.7
Q ss_pred hHHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHH-HHHHH
Q 043142 8 VLATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPF-ALKAC 83 (512)
Q Consensus 8 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~ 83 (512)
.+|+.+.+.+-..|++++|+.+++.+.+ ..+..|-.+..++...|+.+.|.+.|.+.++ +.|+.+...+ +....
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHH
Confidence 4788899999999999999999998754 3678999999999999999999999999887 4576554333 33445
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHH
Q 043142 84 SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRE 162 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~ 162 (512)
...|++++|...+.+.++.. +-=..+|+.|...+-..|++..|+.-|++....+|+. ..|..|...+...+.++.|..
T Consensus 195 ka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 56789999999999888874 2335689999999999999999999999999999976 579999999999999999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCC
Q 043142 163 LHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQP 239 (512)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 239 (512)
.|..+.... +....++..+...|-..|.++.|+..|++..+.+ ...||.|..++-..|+..+|.+.|.+.....+.
T Consensus 274 ~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ 352 (966)
T KOG4626|consen 274 CYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN 352 (966)
T ss_pred HHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc
Confidence 998887653 3456777888889999999999999999987644 579999999999999999999999999887776
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGALL 316 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll 316 (512)
...+.+.|...+...|.+++|..+|.... .+.|. ....+.|...|-+.|++++|+..+++. +++|+.. .++.+.
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmG 429 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMG 429 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcc
Confidence 66788899999999999999999999887 45674 567889999999999999999999887 7888866 999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
..|...|+.+.|.+.+.+++..+|.-..++..|..+|-.+|+..+|++-++...+...
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 9999999999999999999999999889999999999999999999999998876543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-20 Score=185.30 Aligned_cols=294 Identities=13% Similarity=0.126 Sum_probs=189.7
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhC
Q 043142 46 RAYAWNGPYEVAIELYYRLLEIGLVPD-NFTFPFALKACSALSAIEEGRRIHEDVIRNKWETD---VFVGAALIDMYAKC 121 (512)
Q Consensus 46 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 121 (512)
..+...|++++|+..|.++.+.+ |+ ..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34455677777777777776642 33 33566666666667777777777766665431111 23455666666666
Q ss_pred CChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043142 122 SCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQ 201 (512)
Q Consensus 122 g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 201 (512)
|++++|.++|+++.+.+| .+..+++.++.+|.+.|++++|.+.|+.
T Consensus 121 g~~~~A~~~~~~~l~~~~----------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGD----------------------------------FAEGALQQLLEIYQQEKDWQKAIDVAER 166 (389)
T ss_pred CCHHHHHHHHHHHHcCCc----------------------------------chHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 666666666666655443 2333444455555555555555555555
Q ss_pred cCCCC--------chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 043142 202 LREKR--------VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHI 273 (512)
Q Consensus 202 m~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 273 (512)
+.+.+ ...|..+...+.+.|++++|...|+++.+..+.+...+..+...+.+.|++++|.++++++.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 243 (389)
T PRK11788 167 LEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--- 243 (389)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 43221 1123455566667777777777777776654444556666777777777777777777777643
Q ss_pred CCC--hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 043142 274 DPS--VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILS 350 (512)
Q Consensus 274 ~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 350 (512)
.|+ ..+++.++.+|.+.|++++|...++++ ...|+...+..+...+...|++++|..+++++++..|++. .+..++
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~ 322 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLL 322 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHH
Confidence 333 345677777888888888888888776 3456666667778888888888888888888888877665 555555
Q ss_pred HHHHh---ccChhHHHHHHHHHHhCCCccCCc
Q 043142 351 NIYAR---AANWEGVAKLRKLMIDRGIKKSIA 379 (512)
Q Consensus 351 ~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 379 (512)
..+.. .|+.+++..++++|.+++++++|.
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 55443 458888888888888888887775
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-20 Score=183.95 Aligned_cols=293 Identities=14% Similarity=0.107 Sum_probs=236.8
Q ss_pred HHHHHccCChHHHHHHHccCCC--C-CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC---cchHHHHHHHHhccC
Q 043142 14 VHLYSACDCLHNAHQLFDRIPQ--R-NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD---NFTFPFALKACSALS 87 (512)
Q Consensus 14 i~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~ 87 (512)
...+...|++++|...|+++.+ | +..+|..+...+.+.|++++|..+++.+...+..++ ...+..+...+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3456678999999999999864 3 556889999999999999999999999987532222 245778888999999
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHH
Q 043142 88 AIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFS 167 (512)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~ 167 (512)
+++.|..+|..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+.+|+....
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------------------- 177 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV----------------------- 177 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-----------------------
Confidence 9999999999998764 5678899999999999999999999999998766532110
Q ss_pred HHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHH
Q 043142 168 WRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHIT 243 (512)
Q Consensus 168 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t 243 (512)
.....+..+...+.+.|++++|.+.|+++.+. +...+..+...|.+.|++++|.++|+++....+ ....+
T Consensus 178 ------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 178 ------EIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred ------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 00123455677778888888888888887542 345777788889999999999999999987665 44567
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHH-
Q 043142 244 FVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGVWGALLNSCKL- 321 (512)
Q Consensus 244 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~- 321 (512)
+..++.++...|++++|...++.+.+. .|+...+..++..+.+.|++++|..+++++ ...|+..+++.++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhc
Confidence 888999999999999999999998743 677777789999999999999999999876 567999999988887764
Q ss_pred --cCCHHHHHHHHHHHHhcC
Q 043142 322 --HGHVKLAELALEKLIELE 339 (512)
Q Consensus 322 --~g~~~~A~~~~~~~~~~~ 339 (512)
.|+.+++..+++++++..
T Consensus 329 ~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred cCCccchhHHHHHHHHHHHH
Confidence 568899999999888643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-18 Score=179.74 Aligned_cols=357 Identities=12% Similarity=0.030 Sum_probs=282.2
Q ss_pred HHHHHHHHHccCChHHHHHHHccCC--CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHhcc
Q 043142 10 ATKLVHLYSACDCLHNAHQLFDRIP--QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD-NFTFPFALKACSAL 86 (512)
Q Consensus 10 ~~~Li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~ 86 (512)
+..+...|.+.|++++|++.|++.. .|+...|..+..+|.+.|++++|++.++..++. .|+ ...+..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 4466778889999999999999864 467888999999999999999999999999875 454 45788888999999
Q ss_pred CChHHHHHHHHHHHHhCC-----------------------------CCChhHHHHH-----------------------
Q 043142 87 SAIEEGRRIHEDVIRNKW-----------------------------ETDVFVGAAL----------------------- 114 (512)
Q Consensus 87 ~~~~~a~~~~~~~~~~g~-----------------------------~~~~~~~~~l----------------------- 114 (512)
|++++|...+..+...+- +++...+..+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 999999876544332210 1110011100
Q ss_pred -------HHHH------HhCCChHHHHHHHHhhhhCC---CC-hhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchH
Q 043142 115 -------IDMY------AKCSCVVNARQVFDKILERD---PS-EATLVTVISASADIAALPQGRELHGFSWRHRFELNVK 177 (512)
Q Consensus 115 -------i~~~------~~~g~~~~A~~~~~~m~~~~---pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 177 (512)
+..+ ...+++++|.+.|++..+.+ |+ ...+..+...+...|++++|...++..++.. +.+..
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHH
Confidence 1100 11357889999999988753 43 3457777777889999999999999998764 33466
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcC
Q 043142 178 VKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRG 254 (512)
Q Consensus 178 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~ 254 (512)
.+..+...|...|++++|...|+...+ .+...|..+...+...|++++|+..|++.....+.+...+..+..++.+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC
Confidence 888899999999999999999998754 34678899999999999999999999999988777778888899999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh--------HHHHHHHHHHHcCC
Q 043142 255 GLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG--------VWGALLNSCKLHGH 324 (512)
Q Consensus 255 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~--------~~~~ll~~~~~~g~ 324 (512)
|++++|...|+..++. .| +...++.+...+...|++++|++.|++. ...|+.. .++..+..+...|+
T Consensus 447 g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 447 GSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999743 45 5788999999999999999999999886 3444311 12222233444699
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 325 VKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 325 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+++|.++++++++.+|.+...+..++.++...|++++|.+.|++..+.
T Consensus 524 ~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999998889999999999999999999999988654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-18 Score=180.46 Aligned_cols=321 Identities=10% Similarity=-0.031 Sum_probs=149.2
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043142 44 LIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC 123 (512)
Q Consensus 44 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (512)
++..+.+.|++++|+.+++........+ ...+..++.+....|+++.|.+.++.+++.. +.+...+..+...+.+.|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 3444445555555555555554432221 1223333333444555555555555555443 3334444445555555555
Q ss_pred hHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 043142 124 VVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQL 202 (512)
Q Consensus 124 ~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 202 (512)
+++|...|+++.+.+|+. ..+..+...+...|++++|...++.+......+ ...+..+ ..+.+.|++++|..+++.+
T Consensus 126 ~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 126 YATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 555555555555544432 234444444555555555555555444332211 1122222 1244455555555555554
Q ss_pred CCCC----chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHH----HHHHHHHHHHhcCCC
Q 043142 203 REKR----VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDE----GRMFFESMVRDYHID 274 (512)
Q Consensus 203 ~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~ 274 (512)
.+.+ ...+..+...+.+.|++++|+..|++.....+.+...+..+...+...|++++ |...|+...+ +.
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~ 280 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FN 280 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hC
Confidence 3321 12222333444555555555555555554444344444445555555555543 4555555442 23
Q ss_pred C-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 043142 275 P-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDP-GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSN 351 (512)
Q Consensus 275 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 351 (512)
| +...+..+...+.+.|++++|+..+++. ...|+. ..+..+...+...|++++|...++++.+.+|.++..+..+..
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~ 360 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAA 360 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3 3444555555555555555555555444 223332 244444455555555555555555555555544433333444
Q ss_pred HHHhccChhHHHHHHHHHHh
Q 043142 352 IYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 352 ~~~~~g~~~~a~~~~~~m~~ 371 (512)
++...|++++|...+++..+
T Consensus 361 al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 45555555555555555443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-18 Score=179.50 Aligned_cols=342 Identities=11% Similarity=0.007 Sum_probs=279.9
Q ss_pred HHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHhccCC
Q 043142 13 LVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD-NFTFPFALKACSALSA 88 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~ 88 (512)
.+....+.|++++|+.+++.... .+...+..++.+....|++++|+..|+++... .|+ ...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCC
Confidence 44556678999999999988643 35666777778888899999999999999885 454 4567778888999999
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSW 168 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 168 (512)
+++|...++.+++.. +.+...+..+...|...|++++|...++.+....|+.......+..+...|++++|...++.++
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999874 5567888999999999999999999999998887766554444455788999999999999988
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHH----HHHHHHHhHHCCCCCH
Q 043142 169 RHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTK----ALDLFEKMKDEVQPDH 241 (512)
Q Consensus 169 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~p~~ 241 (512)
+....++......+...+.+.|++++|...|+...+. +...+..+...|.+.|++++ |+..|++.....+.+.
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~ 284 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV 284 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH
Confidence 8754445555666778899999999999999997653 45778889999999999986 8999999998877778
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHhH-HHHHHHH
Q 043142 242 ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGV-WGALLNS 318 (512)
Q Consensus 242 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~ 318 (512)
..+..+...+...|++++|...++...+. .| +...+..+...|.+.|++++|+..++++ ...|+... +..+..+
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a 361 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 88999999999999999999999999753 56 5667788899999999999999999988 35676544 3445677
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 319 CKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+...|+.++|...|+++++..|.+. ...+++|...+.+..+.
T Consensus 362 l~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHh
Confidence 8999999999999999999998764 23445666666655543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-19 Score=167.36 Aligned_cols=350 Identities=15% Similarity=0.114 Sum_probs=299.0
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHccCCC--CCchHHHH-HHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHH
Q 043142 7 PVLATKLVHLYSACDCLHNAHQLFDRIPQ--RNLFLWNV-LIRAYAWNGPYEVAIELYYRLLEIGLVPD-NFTFPFALKA 82 (512)
Q Consensus 7 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~ 82 (512)
+..|..|...|...|+.+.|.+.|.+..+ |+.....+ +...+-..|+.++|...|.+.++. .|. ...|+.|...
T Consensus 150 ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~ 227 (966)
T KOG4626|consen 150 IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCV 227 (966)
T ss_pred hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchH
Confidence 45788899999999999999999988765 44443333 334445579999999999998874 444 4578999989
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHH
Q 043142 83 CSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGR 161 (512)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~ 161 (512)
+-..|+...|.+-|++.++.. +.=...|-.|.+.|...+.+++|...+.+.....|+. +.+..+...|...|.++.|.
T Consensus 228 f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI 306 (966)
T KOG4626|consen 228 FNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAI 306 (966)
T ss_pred HhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHH
Confidence 999999999999999998875 3335678889999999999999999999998888865 56888888899999999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC
Q 043142 162 ELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ 238 (512)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 238 (512)
..|++.++.. +.-...|+.|..++-..|++.+|.+.|.....-. ..+.+.|...|...|.+++|..+|.....-.+
T Consensus 307 ~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p 385 (966)
T KOG4626|consen 307 DTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP 385 (966)
T ss_pred HHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh
Confidence 9999998864 3346789999999999999999999999977533 57888999999999999999999999887655
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHH
Q 043142 239 PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGAL 315 (512)
Q Consensus 239 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~l 315 (512)
--...++.|...|.+.|++++|...|++.+ .++|+ ...|+.+...|-..|+.+.|.+.+.+. .+.|... ..+.|
T Consensus 386 ~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL 462 (966)
T KOG4626|consen 386 EFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL 462 (966)
T ss_pred hhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH
Confidence 556778999999999999999999999987 67895 678999999999999999999999877 6777655 88999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHH
Q 043142 316 LNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVA 363 (512)
Q Consensus 316 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 363 (512)
.+.|...|++.+|+..++.++++.|+.+.+|..++....-..+|.+-.
T Consensus 463 asi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 463 ASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred HHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchH
Confidence 999999999999999999999999999999999988877777776633
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-17 Score=183.43 Aligned_cols=354 Identities=14% Similarity=0.096 Sum_probs=231.9
Q ss_pred HHHHHHccCChHHHHHHHccCCC--C-CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-chH------------
Q 043142 13 LVHLYSACDCLHNAHQLFDRIPQ--R-NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN-FTF------------ 76 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~------------ 76 (512)
+...+...|++++|+..|++..+ | +...+..+...|.+.|++++|+..|++..+....... ..+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 34455667777777777766532 2 5566777777777777777777777776654321111 011
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh-HHHH---------
Q 043142 77 PFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA-TLVT--------- 146 (512)
Q Consensus 77 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~-t~~~--------- 146 (512)
......+...|++++|.+.++++++.. +.+...+..|...|.+.|++++|++.|+++.+.+|+.. .+..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 111234556677777777777776664 34555666667777777777777777777766665432 1111
Q ss_pred ---------------------------------HHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 043142 147 ---------------------------------VISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVK 193 (512)
Q Consensus 147 ---------------------------------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 193 (512)
+...+...|++++|.+.++++++.. +.+..++..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 1122334677777777777777654 334556666777777777777
Q ss_pred HHHHHHHhcCC--C-CchHHHHH--------------------------------------------HHHHHHcCChHHH
Q 043142 194 VARNLFEQLRE--K-RVVSWNAM--------------------------------------------ITGYAMHGHSTKA 226 (512)
Q Consensus 194 ~A~~~~~~m~~--~-~~~~~~~l--------------------------------------------i~~~~~~g~~~~A 226 (512)
+|...|+++.+ | +...+..+ ...+...|+.++|
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 77777776542 2 22222222 3334455555555
Q ss_pred HHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-C
Q 043142 227 LDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-R 304 (512)
Q Consensus 227 ~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 304 (512)
+.+++ ..+++...+..+...+.+.|++++|+..|+.+.+. .| +...+..++..|...|++++|++.++.. .
T Consensus 593 ~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 593 EALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 55554 22345556677888888999999999999988753 56 6788888999999999999999999877 3
Q ss_pred CCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhccChhHHHHHHHHHHh-CCCc
Q 043142 305 VKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDA------GNYVILSNIYARAANWEGVAKLRKLMID-RGIK 375 (512)
Q Consensus 305 ~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~ 375 (512)
..|+ ...+..+..++...|++++|.++++++++..|+++ ..+..+..++...|++++|.+.++.... .|+.
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 4444 34677778888889999999999999988765543 2555668888999999999999887653 3443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-17 Score=182.08 Aligned_cols=362 Identities=12% Similarity=0.028 Sum_probs=254.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCC--CCch-HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CcchHHHHHHHHh
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQ--RNLF-LWNVLIRAYAWNGPYEVAIELYYRLLEIGLVP-DNFTFPFALKACS 84 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~ 84 (512)
.+...+..+-....++.|...+++... .|.. ........+...|++++|+..|++..+. .| +...+..+..++.
T Consensus 237 ~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~ 314 (1157)
T PRK11447 237 ALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYS 314 (1157)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 444455555555567778888866432 1221 1223456778899999999999999885 34 5667888889999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCC-hh------------HHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHH
Q 043142 85 ALSAIEEGRRIHEDVIRNKWETD-VF------------VGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISA 150 (512)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~-~~------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~ 150 (512)
+.|++++|+..|++.++...... .. ....+...+.+.|++++|+..|+++.+.+|+. ..+..+...
T Consensus 315 ~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~ 394 (1157)
T PRK11447 315 QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDV 394 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999988753221 11 11233567889999999999999999998854 467778888
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCc-----------------------------------------hHHHHHHHHHHHhc
Q 043142 151 SADIAALPQGRELHGFSWRHRFELN-----------------------------------------VKVKTALVDMYAKC 189 (512)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~g~~~~-----------------------------------------~~~~~~li~~y~~~ 189 (512)
+...|++++|.+.|+.+++...... ...+..+...+...
T Consensus 395 ~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~ 474 (1157)
T PRK11447 395 AMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQ 474 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHC
Confidence 9999999999999999886532110 11345688889999
Q ss_pred CCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 043142 190 GLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFES 266 (512)
Q Consensus 190 g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 266 (512)
|++++|.+.|++..+. +...+..+...|.+.|++++|...|+++....+.+...+..+...+...++.++|...++.
T Consensus 475 g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 475 GKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999998653 3456778889999999999999999999876664444443333444555666666555554
Q ss_pred HHHhc--------------------------------------CCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC
Q 043142 267 MVRDY--------------------------------------HIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP 307 (512)
Q Consensus 267 ~~~~~--------------------------------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 307 (512)
+.... ..+++...+..+...|.+.|++++|++.+++. ...|
T Consensus 555 l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P 634 (1157)
T PRK11447 555 LPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP 634 (1157)
T ss_pred CCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 32110 01224445566666777777777777777666 3334
Q ss_pred C-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 308 D-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 308 ~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+ ...+..+...+...|++++|++.++++.+..|+++..+..+..++...|++++|.++++.+.+.
T Consensus 635 ~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 635 GNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 3 4466677777777777777777777777777766666667777777777777777777776654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.5e-17 Score=171.05 Aligned_cols=363 Identities=10% Similarity=0.052 Sum_probs=238.0
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHH
Q 043142 7 PVLATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD-NFTFPFALKA 82 (512)
Q Consensus 7 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~ 82 (512)
+....-.+......|+.++|++++.+..+ .+...+..+...+...|++++|.++|++..+. .|+ ...+..+...
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~ 92 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 33444455555556666666666655432 23334555556666666666666666665543 232 2334444455
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhH-HHHHHHHHhccCCh----
Q 043142 83 CSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEAT-LVTVISASADIAAL---- 157 (512)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t-~~~ll~~~~~~~~~---- 157 (512)
+...|++++|...++++++.. +.+.. +..+..++...|+.++|+..++++.+..|+... +..+..++...+..
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 556666666666666665553 33344 555555666666666666666666665554432 22223333222332
Q ss_pred ------------------------------------------HHHHHHHHHHHHc-CCCCchH-HH----HHHHHHHHhc
Q 043142 158 ------------------------------------------PQGRELHGFSWRH-RFELNVK-VK----TALVDMYAKC 189 (512)
Q Consensus 158 ------------------------------------------~~a~~~~~~~~~~-g~~~~~~-~~----~~li~~y~~~ 189 (512)
+.|.+.++.+.+. ...|+.. .+ ...+.++...
T Consensus 171 ~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 171 GAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 4455555555543 1122211 11 1112344577
Q ss_pred CCHHHHHHHHHhcCCCC--chH--HHHHHHHHHHcCChHHHHHHHHHhHHCCCCC----HHHHHHHHHHHhcCCCHHHHH
Q 043142 190 GLVKVARNLFEQLREKR--VVS--WNAMITGYAMHGHSTKALDLFEKMKDEVQPD----HITFVGVLSACSRGGLFDEGR 261 (512)
Q Consensus 190 g~~~~A~~~~~~m~~~~--~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~----~~t~~~ll~a~~~~g~~~~a~ 261 (512)
|++++|+..|+.+.+.+ ... -..+...|...|++++|+..|+++.+..+.+ ......+..++...|++++|.
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 99999999999988643 122 1225678999999999999999987655411 345666777889999999999
Q ss_pred HHHHHHHHhcC----------CCCC---hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHH
Q 043142 262 MFFESMVRDYH----------IDPS---VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVK 326 (512)
Q Consensus 262 ~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 326 (512)
.+++.+.+... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...+...|+++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 99999975311 0122 234567788899999999999999987 3344 4558899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 327 LAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 327 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
+|++.++++++.+|+++..+..++..+...|++++|..+++.+.+..
T Consensus 411 ~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 411 AAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999998754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-16 Score=165.16 Aligned_cols=336 Identities=14% Similarity=0.054 Sum_probs=265.2
Q ss_pred CCCchhHHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCC-----------
Q 043142 3 FGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIG----------- 68 (512)
Q Consensus 3 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----------- 68 (512)
+.|++..|..+...|.+.|++++|++.++...+ .++..|..+..+|...|++++|+.-|......+
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV 235 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 467888999999999999999999999998653 366789999999999999999987665432211
Q ss_pred -----------------CCCC-cchHHHHHHH------------------------------------HhccCChHHHHH
Q 043142 69 -----------------LVPD-NFTFPFALKA------------------------------------CSALSAIEEGRR 94 (512)
Q Consensus 69 -----------------~~p~-~~t~~~ll~~------------------------------------~~~~~~~~~a~~ 94 (512)
..|. ...+..+... ....+++++|.+
T Consensus 236 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~ 315 (615)
T TIGR00990 236 ERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315 (615)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH
Confidence 0111 0111111000 011256888999
Q ss_pred HHHHHHHhC-C-CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 043142 95 IHEDVIRNK-W-ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRHR 171 (512)
Q Consensus 95 ~~~~~~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 171 (512)
.|+..++.+ . +.+...++.+...+...|++++|+..|++..+.+|+. .+|..+...+...|++++|...++.+++..
T Consensus 316 ~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 395 (615)
T TIGR00990 316 AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN 395 (615)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999988765 2 3355678888899999999999999999999999874 478888888999999999999999998874
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHH
Q 043142 172 FELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVL 248 (512)
Q Consensus 172 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll 248 (512)
+.+..++..+...|...|++++|...|++..+. +...|..+...+.+.|++++|+..|++.....+.+...+..+.
T Consensus 396 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg 474 (615)
T TIGR00990 396 -SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYG 474 (615)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 456788999999999999999999999998643 3567888889999999999999999999887666678888899
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCCCCh-h-------HHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHHHHH
Q 043142 249 SACSRGGLFDEGRMFFESMVRDYHIDPSV-Q-------HYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGALLNS 318 (512)
Q Consensus 249 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-------~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~ 318 (512)
..+...|++++|...|+...+ +.|+. . .++.....+...|++++|.+++++. ...|+.. .+..+...
T Consensus 475 ~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~ 551 (615)
T TIGR00990 475 ELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQL 551 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 999999999999999999874 34421 1 1222233344579999999999886 5556554 78899999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 319 CKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
+...|++++|.+.|+++.++.+..
T Consensus 552 ~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 552 LLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHccCHHHHHHHHHHHHHHhccH
Confidence 999999999999999999987653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-16 Score=165.80 Aligned_cols=332 Identities=11% Similarity=0.016 Sum_probs=255.8
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDM 117 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 117 (512)
..--.-.+......|+.++|++++.+..... +.+...+..+..++...|++++|.++++..++.. +.+...+..+...
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~ 92 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3334445667788999999999999987622 2334468889999999999999999999998875 5567778889999
Q ss_pred HHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 043142 118 YAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARN 197 (512)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 197 (512)
+.+.|++++|...+++..+..|+...+..+..++...|+.++|...++.+.+.. +.+..++..+..++.+.|..++|.+
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 999999999999999999988866557778888899999999999999999875 3455566667777777777776665
Q ss_pred HHHhcCC-------------------------------------------------CCch---HH----HHHHHHHHHcC
Q 043142 198 LFEQLRE-------------------------------------------------KRVV---SW----NAMITGYAMHG 221 (512)
Q Consensus 198 ~~~~m~~-------------------------------------------------~~~~---~~----~~li~~~~~~g 221 (512)
.++.... .++. .+ ...+..+...|
T Consensus 172 ~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 172 AIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 5553222 0110 01 01123456778
Q ss_pred ChHHHHHHHHHhHHCCC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCChHHHH
Q 043142 222 HSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP--SVQHYTCMVDLLGHSGRLDEAC 297 (512)
Q Consensus 222 ~~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 297 (512)
+.++|+..|+++.+.+. |+.. ...+..++...|++++|+.+|+.+.+.....+ .......|..++.+.|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 99999999999988764 4332 22357789999999999999999874321111 1345666777889999999999
Q ss_pred HHHHhCC-CCC-------------C---HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChh
Q 043142 298 DLIMQMR-VKP-------------D---PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWE 360 (512)
Q Consensus 298 ~~~~~m~-~~p-------------~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 360 (512)
.+++++. ..| + ...+..+...+...|+.++|++.++++.+..|.++..+..++.++...|+++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 9998872 223 2 1244567778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 043142 361 GVAKLRKLMIDRG 373 (512)
Q Consensus 361 ~a~~~~~~m~~~g 373 (512)
+|++.+++..+..
T Consensus 411 ~A~~~l~~al~l~ 423 (765)
T PRK10049 411 AAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999988755
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-15 Score=156.76 Aligned_cols=214 Identities=11% Similarity=0.023 Sum_probs=164.3
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCchHHHHHHHHHHHcCChHHHHHHHHH
Q 043142 155 AALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE--KRVVSWNAMITGYAMHGHSTKALDLFEK 232 (512)
Q Consensus 155 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 232 (512)
++.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++
T Consensus 490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55556666555555443 3433333444555678888888888887653 3345566677778888888889998888
Q ss_pred hHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-
Q 043142 233 MKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG- 310 (512)
Q Consensus 233 m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~- 310 (512)
..+..+++...+..+.......|++++|...+++.++ +.|+...+..+...+.+.|+.++|+..+++. ...|+..
T Consensus 568 AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~ 644 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN 644 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 8876654444444555556667999999999998873 4678888889999999999999999999887 4566544
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
.+..+...+...|+.++|+..++++++..|.++..+..+..++...|++++|...+++..+..
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 777788889999999999999999999999999999999999999999999999999887654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-14 Score=146.62 Aligned_cols=351 Identities=13% Similarity=0.073 Sum_probs=260.1
Q ss_pred HHHccCChHHHHHHHccCCC--CCc-hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchH-HHH--HHHHhccCCh
Q 043142 16 LYSACDCLHNAHQLFDRIPQ--RNL-FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTF-PFA--LKACSALSAI 89 (512)
Q Consensus 16 ~y~~~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~l--l~~~~~~~~~ 89 (512)
...+.|+++.|+..|++..+ |+. .....++..+...|+.++|+..+++.. .|+...+ ..+ ...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 45678999999999988765 332 123378888888899999999999887 3433322 222 4467778999
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHH
Q 043142 90 EEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWR 169 (512)
Q Consensus 90 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 169 (512)
++|.++++++++.. +.++.++..++..|...++.++|++.++++...+|+...+..++..+...++..+|.+.++++.+
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999998886 44567777888889999999999999999999888866665454444456666668889988888
Q ss_pred cCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC----------------------------------------------
Q 043142 170 HRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR---------------------------------------------- 203 (512)
Q Consensus 170 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---------------------------------------------- 203 (512)
.. +.+...+..++....+.|-...|.++..+-+
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 75 5566677777777777776666655544322
Q ss_pred --C---CCc---hHH----HHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 043142 204 --E---KRV---VSW----NAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRD 270 (512)
Q Consensus 204 --~---~~~---~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 270 (512)
. +++ ..| --.+-++...|+..++++.|+.+...+. .-..+-..+.++|...+++++|..+|..+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 0 000 011 1234466778889999999999998875 23347778899999999999999999998654
Q ss_pred cC----CCCChhHHHHHHHHHhccCChHHHHHHHHhCCC-C-------------CC--Hh-HHHHHHHHHHHcCCHHHHH
Q 043142 271 YH----IDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRV-K-------------PD--PG-VWGALLNSCKLHGHVKLAE 329 (512)
Q Consensus 271 ~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~-------------p~--~~-~~~~ll~~~~~~g~~~~A~ 329 (512)
.+ ..++......|.-+|...+++++|..+++++.- . |+ -. ....++..+.-.|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 32 122444467888999999999999999988821 1 22 12 3344566678899999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 330 LALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 330 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+.++++....|.|+.....+.+++...|.+.+|.+.++.....
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999776554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-13 Score=144.10 Aligned_cols=359 Identities=11% Similarity=0.045 Sum_probs=270.4
Q ss_pred HHHHHHHccCChHHHHHHHccCCCCCch-HHHHH--HHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC
Q 043142 12 KLVHLYSACDCLHNAHQLFDRIPQRNLF-LWNVL--IRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSA 88 (512)
Q Consensus 12 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 88 (512)
.++..+...|+.++|+..+++...|+.. .+..+ ...|...|++++|+++|+++.+.... +...+..++..+...++
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGR 151 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCC
Confidence 8889999999999999999998876433 33333 45778889999999999999886422 34566677788899999
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh-HHHHHHHHHhccCChHHHHHHH---
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA-TLVTVISASADIAALPQGRELH--- 164 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~-t~~~ll~~~~~~~~~~~a~~~~--- 164 (512)
.++|++.++.+.+. .|+...+-.++..+...++..+|++.++++.+.+|+.. .+..+..+..+.|....|.++.
T Consensus 152 ~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 152 GGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred HHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 99999999999876 45555565555556557777779999999999987543 3445555555554443333332
Q ss_pred ---------------------------------------------HHHHHc-CC-CCchHH-HH---HHHHHHHhcCCHH
Q 043142 165 ---------------------------------------------GFSWRH-RF-ELNVKV-KT---ALVDMYAKCGLVK 193 (512)
Q Consensus 165 ---------------------------------------------~~~~~~-g~-~~~~~~-~~---~li~~y~~~g~~~ 193 (512)
+.+... +- ++.... .. -.+-++.+.|++.
T Consensus 230 p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~ 309 (822)
T PRK14574 230 PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTA 309 (822)
T ss_pred ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 222221 11 211111 12 2344667889999
Q ss_pred HHHHHHHhcCCCC--ch--HHHHHHHHHHHcCChHHHHHHHHHhHHCC-----C-CCHHHHHHHHHHHhcCCCHHHHHHH
Q 043142 194 VARNLFEQLREKR--VV--SWNAMITGYAMHGHSTKALDLFEKMKDEV-----Q-PDHITFVGVLSACSRGGLFDEGRMF 263 (512)
Q Consensus 194 ~A~~~~~~m~~~~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~-p~~~t~~~ll~a~~~~g~~~~a~~~ 263 (512)
++++.|+.+.... +. +--++..+|...+++++|+.+|+++.... . ++......|..++..++++++|..+
T Consensus 310 ~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~ 389 (822)
T PRK14574 310 DLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQF 389 (822)
T ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999998544 33 44567899999999999999999996643 1 3444457899999999999999999
Q ss_pred HHHHHHhcC----------CCCC---hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHH
Q 043142 264 FESMVRDYH----------IDPS---VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLA 328 (512)
Q Consensus 264 ~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A 328 (512)
++.+.+... -.|+ ...+..++..+...|++.+|++.++++ ...| |...+..+...+...|.+.+|
T Consensus 390 l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 390 AVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred HHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 999975211 0122 234556788899999999999999998 3334 666889999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 329 ELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 329 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
++.++.+..++|.+..+....+..+...|+|.+|.++.+.+.+..
T Consensus 470 ~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 470 EQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999998776543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-13 Score=146.82 Aligned_cols=348 Identities=11% Similarity=0.034 Sum_probs=259.5
Q ss_pred CChHHHHHHHccCCCC---CchHHHHHHHHHHhcCCchHHHHHHHHHHHC-C-CCCCcchHHHHHHHHhccCC---hHHH
Q 043142 21 DCLHNAHQLFDRIPQR---NLFLWNVLIRAYAWNGPYEVAIELYYRLLEI-G-LVPDNFTFPFALKACSALSA---IEEG 92 (512)
Q Consensus 21 g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~~~~~~~~---~~~a 92 (512)
+...+|.+.+..|.+. +....-.+.-..++.|+.++|.++|+..... + ..++.....-++..+.+.+. ...+
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 5556666665555432 4444444444556778888888888877552 1 11222223355555555544 2222
Q ss_pred ----------------------HHHHHHHHHh-CC-CC--ChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHH
Q 043142 93 ----------------------RRIHEDVIRN-KW-ET--DVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVT 146 (512)
Q Consensus 93 ----------------------~~~~~~~~~~-g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ 146 (512)
.......... +. ++ +...|..+..++.. ++.++|...|.+.....|+......
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~ 514 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRA 514 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHH
Confidence 2222222221 11 34 67788888888887 8999999999999888898766555
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHH---HHHHHcCCh
Q 043142 147 VISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMI---TGYAMHGHS 223 (512)
Q Consensus 147 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~ 223 (512)
+..++...|++++|...++.+... +|+...+..+...+.+.|+.++|...|+...+.+...++... ......|++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCH
Confidence 556667899999999999987654 344455667788899999999999999988765543333333 333445999
Q ss_pred HHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHh
Q 043142 224 TKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQ 302 (512)
Q Consensus 224 ~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (512)
++|+..|++..+.. |+...+..+..++.+.|++++|...++...+ ..| +...++.+...+...|+.++|+..+++
T Consensus 593 ~eAl~~~~~AL~l~-P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 593 ELALNDLTRSLNIA-PSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998654 5678899999999999999999999999974 467 677888888999999999999999998
Q ss_pred C-CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 303 M-RVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 303 m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
. ...|+ ...+..+..++...|++++|+..++++++..|.+..+.........+..+++.+.+-+++--..++.
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 7 45564 4589999999999999999999999999999999988888899999999999999988877666554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.8e-13 Score=122.18 Aligned_cols=286 Identities=14% Similarity=0.169 Sum_probs=223.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCC----ChhHHHHHHHHHhcc
Q 043142 79 ALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDP----SEATLVTVISASADI 154 (512)
Q Consensus 79 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p----d~~t~~~ll~~~~~~ 154 (512)
+..++-.....+++.+=.......|++.+...-+-...+.-...+++.|+.+|+++.+.+| |..+|+.++-.-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 3455666667788888888888888877777767666777788999999999999999887 567888777554332
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCChHHHHHHHH
Q 043142 155 AALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR---VVSWNAMITGYAMHGHSTKALDLFE 231 (512)
Q Consensus 155 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~ 231 (512)
..+.---+....+ . +--+.|...+.+-|+-.++.++|...|++..+-| ...|+.|..-|....+...|++-++
T Consensus 313 skLs~LA~~v~~i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 313 SKLSYLAQNVSNI--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHHHHh--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 2222111111111 1 2234567778888999999999999999987655 5789999999999999999999999
Q ss_pred HhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC--CCCCC
Q 043142 232 KMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM--RVKPD 308 (512)
Q Consensus 232 ~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~ 308 (512)
...+-++-|-..|-.|.++|.-.+...=|+-+|++.. .++| |...|.+|.+.|.+.+++++|++.|++. .-..+
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 9999888899999999999999999999999999886 5678 8899999999999999999999999887 22345
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 309 PGVWGALLNSCKLHGHVKLAELALEKLIEL-------EPHDAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 309 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
...+..|...+-+.++.++|...|++-++. +|....+-.-|..-+.+.+++++|..+......
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 578889999999999999999999998862 233333444577888899999999887665543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-15 Score=140.12 Aligned_cols=253 Identities=18% Similarity=0.168 Sum_probs=113.7
Q ss_pred HHHHHHHhCCChHHHHHHHHhh-hhC-CCChhHHHH-HHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 043142 113 ALIDMYAKCSCVVNARQVFDKI-LER-DPSEATLVT-VISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKC 189 (512)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m-~~~-~pd~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 189 (512)
.+..++.+.|++++|++++++. ... +|+...|.. +...+-..++.+.|.+.++.+...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4466666777777777777443 333 344444433 333445567777777777777765532 55566677776 688
Q ss_pred CCHHHHHHHHHhcCC--CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 043142 190 GLVKVARNLFEQLRE--KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLFDEGRMFFE 265 (512)
Q Consensus 190 g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~ 265 (512)
+++++|.++++..-+ ++...+..++..+.+.++++++.+++++...... ++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988877643 4466777888889999999999999999876553 567778888889999999999999999
Q ss_pred HHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 266 SMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQMR--VKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 266 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
+.++. .| |......++..+...|+.+++.++++... ...|...|..+..++...|+.++|...+++..+.+|+|
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99854 67 57888999999999999999888887762 23455688999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 343 AGNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
+.....++.++...|+.++|.+++++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999987754
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.5e-12 Score=114.26 Aligned_cols=339 Identities=13% Similarity=0.079 Sum_probs=236.3
Q ss_pred cCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHH
Q 043142 32 RIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVG 111 (512)
Q Consensus 32 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 111 (512)
+..+++..++..||.++++--..+.|.++|++..+...+.+..+||.+|.+-+- ..+.++..+|+...+.||..++
T Consensus 201 E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 201 ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhH
Confidence 333446678999999999999999999999999888888888899999877543 3347888889988889999999
Q ss_pred HHHHHHHHhCCChHHHHH----HHHhhhhCC--CChhHHHHHHHHHhccCChHH-HHHHHHHHHH----cCC----CCch
Q 043142 112 AALIDMYAKCSCVVNARQ----VFDKILERD--PSEATLVTVISASADIAALPQ-GRELHGFSWR----HRF----ELNV 176 (512)
Q Consensus 112 ~~li~~~~~~g~~~~A~~----~~~~m~~~~--pd~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~----~~~~ 176 (512)
|+++.+.++.|+++.|.+ ++.+|.+.+ |...+|..+|..+.+-++..+ +..+...+.. ..+ +.+.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998876554 455666654 777889988888888777654 3344333332 122 3345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----------chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHH
Q 043142 177 KVKTALVDMYAKCGLVKVARNLFEQLREKR-----------VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITF 244 (512)
Q Consensus 177 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~ 244 (512)
..+...++.+.+..+.+.|.++-.-....+ ..-|..+....++....+.-+..|+.|.-.-. |+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 566677788888889988888876654321 13455677778888888999999999988777 999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccC-C--------hHH-----HHHHHH-------hC
Q 043142 245 VGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSG-R--------LDE-----ACDLIM-------QM 303 (512)
Q Consensus 245 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~--------~~~-----A~~~~~-------~m 303 (512)
..++.|..-.+.++-..+++..++ .+|..-......-+...+++.. . +.. |..+++ ++
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~-~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~ 515 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSK-EYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQ 515 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHH-HhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999998888888888875 4454333333333333333332 1 000 111111 12
Q ss_pred -CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCCc--hHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 304 -RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELE---PHDAG--NYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 304 -~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
...-.....+...--+.+.|..++|-+++..+.+.+ |..+. +..-+.+.-........|..+++.|...+..
T Consensus 516 r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 516 RAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 122334455666666788999999999999886543 43332 2234555556677888899999988776654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-13 Score=123.05 Aligned_cols=314 Identities=12% Similarity=0.112 Sum_probs=219.3
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCC------------C
Q 043142 40 LWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWET------------D 107 (512)
Q Consensus 40 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------------~ 107 (512)
..|.+.-.+.+.|+++.|+.-|+...+. .||-.+--.|+-++..-|+.++..+.|.+++.....+ +
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 3455555677888888888888887764 4776654445555556688888888888887642222 2
Q ss_pred hhHHHHH---------------------------------------------------------------HHHHHhCCCh
Q 043142 108 VFVGAAL---------------------------------------------------------------IDMYAKCSCV 124 (512)
Q Consensus 108 ~~~~~~l---------------------------------------------------------------i~~~~~~g~~ 124 (512)
....|.- ..-|.+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 1111110 0123356777
Q ss_pred HHHHHHHHhhhhCCC-----------------------ChhHH----------H-----HHHHHHhccCChHHHHHHHHH
Q 043142 125 VNARQVFDKILERDP-----------------------SEATL----------V-----TVISASADIAALPQGRELHGF 166 (512)
Q Consensus 125 ~~A~~~~~~m~~~~p-----------------------d~~t~----------~-----~ll~~~~~~~~~~~a~~~~~~ 166 (512)
+.|++++.-..+.+. +...| + .-.+.....|++++|.+.|.+
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 777776666555440 00011 0 001111235778888888888
Q ss_pred HHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHH
Q 043142 167 SWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR---EKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHIT 243 (512)
Q Consensus 167 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t 243 (512)
.+...-.-....|| +.-.+-+.|++++|++.|-++. ..++...-.+.+.|-...++.+|++++.+....-+.|+..
T Consensus 516 al~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~i 594 (840)
T KOG2003|consen 516 ALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAI 594 (840)
T ss_pred HHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHH
Confidence 77654333333333 2334567788888888887654 3556666667778888888888988887776554467888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCHhHHHHHHHHH-H
Q 043142 244 FVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQMR-VKPDPGVWGALLNSC-K 320 (512)
Q Consensus 244 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~-~ 320 (512)
+..|...|-+.|+-.+|.+.+-.- +..-| +..+..-|..-|....-+++|+.+|++.. ++|+..-|..++..| +
T Consensus 595 lskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 888999999999999998877643 23344 88888888888999999999999999884 789999999998776 6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccCh
Q 043142 321 LHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANW 359 (512)
Q Consensus 321 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 359 (512)
+.|++++|..+++......|.+......|++.+...|..
T Consensus 672 rsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred hcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 789999999999999999999999999999998887753
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.2e-12 Score=125.35 Aligned_cols=328 Identities=16% Similarity=0.166 Sum_probs=205.4
Q ss_pred CCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHH
Q 043142 52 GPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVF 131 (512)
Q Consensus 52 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 131 (512)
|+.++|.+++.+.++... .+...|.+|...+-..|+.+++...+-.+--.. +.|...|-.+.+...+.|.++.|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 666666666666555421 233455566666666666665554443222222 334455555656666666666666666
Q ss_pred HhhhhCCCChhH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHH----HHHHHHHhcCCHHHHHHHHHhcCC--
Q 043142 132 DKILERDPSEAT-LVTVISASADIAALPQGRELHGFSWRHRFELNVKVKT----ALVDMYAKCGLVKVARNLFEQLRE-- 204 (512)
Q Consensus 132 ~~m~~~~pd~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~y~~~g~~~~A~~~~~~m~~-- 204 (512)
.+..+.+|+..- +.-=...|-+.|+...|..-|.++.....+.|..-.- ..+..|...++-+.|.+.++....
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 666555554322 2233444555566666666665555543222222121 234445555555666666665543
Q ss_pred C---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCC----------------------C-CCHHHHH----HHHHHHhcC
Q 043142 205 K---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEV----------------------Q-PDHITFV----GVLSACSRG 254 (512)
Q Consensus 205 ~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------------------~-p~~~t~~----~ll~a~~~~ 254 (512)
. +...++.++..|....+++.|......+.... . |+...|. .+.-++.+.
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 1 23456666666777777777776666665511 1 2222211 223344455
Q ss_pred CCHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCChHHHHHHHHhCC---CCCCHhHHHHHHHHHHHcCCHHHHH
Q 043142 255 GLFDEGRMFFESMVRDYHIDP--SVQHYTCMVDLLGHSGRLDEACDLIMQMR---VKPDPGVWGALLNSCKLHGHVKLAE 329 (512)
Q Consensus 255 g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~ll~~~~~~g~~~~A~ 329 (512)
...+....+.....++ .+.| ++..|.-+.++|...|++.+|+.+|..+. .--+...|--+..+|...|.+++|.
T Consensus 391 ~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 5555555555555433 5444 67889999999999999999999999882 2234669999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCceee
Q 043142 330 LALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSW 382 (512)
Q Consensus 330 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 382 (512)
+.+++++...|++..+-..|...|.+.|+.++|.+++..|..-+-..-+++.|
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999887444333355666
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-12 Score=128.15 Aligned_cols=280 Identities=13% Similarity=0.048 Sum_probs=219.8
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHH--HHHHHHHhCCChHHHH
Q 043142 51 NGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGA--ALIDMYAKCSCVVNAR 128 (512)
Q Consensus 51 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A~ 128 (512)
.|++++|.+.+....+..-.| ...|.....+..+.|+++.|.+.+.++.+. .|+....- .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 699999998888765542112 122333345557889999999999999875 45543332 4467889999999999
Q ss_pred HHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCch-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 043142 129 QVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRHRFELNV-------KVKTALVDMYAKCGLVKVARNLFE 200 (512)
Q Consensus 129 ~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~ 200 (512)
..++++.+.+|+. .....+...+.+.|+++.+..++..+.+.+..++. .++..++....+..+.+...++++
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999998855 46777888889999999999999999988754332 244455655566667788888888
Q ss_pred hcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-C
Q 043142 201 QLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-S 276 (512)
Q Consensus 201 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~ 276 (512)
.+++ .++.....+..++...|+.++|..++++..+. .||... .++.+....++.+++.+..+...++ .| |
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~---~P~~ 327 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ---HGDT 327 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh---CCCC
Confidence 8764 46778888999999999999999999998873 355532 2344445669999999999999755 55 6
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 043142 277 VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
...+.++...+.+.|++++|.+.|+.. ...|+...+..|...+...|+.++|.+++++.+.+-
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 677889999999999999999999988 678999999999999999999999999999998753
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5e-12 Score=123.78 Aligned_cols=277 Identities=12% Similarity=0.086 Sum_probs=216.2
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHH-HHHHHhCCChHHHHHHHHhhhhCCCChhHHH--HHHHHHhccCChHHHHH
Q 043142 86 LSAIEEGRRIHEDVIRNKWETDVFVGAAL-IDMYAKCSCVVNARQVFDKILERDPSEATLV--TVISASADIAALPQGRE 162 (512)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~--~ll~~~~~~~~~~~a~~ 162 (512)
.|+++.|++......+.. +++.++..+ .....+.|+++.|...|.++.+.+|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999998887765542 233444334 4455899999999999999999988875443 33567788999999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc-----------hHHHHHHHHHHHcCChHHHHHHHH
Q 043142 163 LHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV-----------VSWNAMITGYAMHGHSTKALDLFE 231 (512)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~ 231 (512)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+... ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998876 56778899999999999999999999999875432 234444444445555667777777
Q ss_pred HhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh
Q 043142 232 KMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG 310 (512)
Q Consensus 232 ~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 310 (512)
.+...-+.+......+..++...|+.++|..+++...+. .|+.... ++......++.+++++.+++. +..|+..
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 775543467788889999999999999999999998743 5555322 233334559999999999887 4456554
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 311 -VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 311 -~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
....+...|...+++++|.+.|+++.+..|++ ..+..|..++.+.|+.++|.+++++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67888999999999999999999999999876 4678999999999999999999987644
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-13 Score=130.76 Aligned_cols=280 Identities=16% Similarity=0.101 Sum_probs=221.6
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCC----ChhHHHHHHHHHhccCChHHHHHH
Q 043142 88 AIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDP----SEATLVTVISASADIAALPQGREL 163 (512)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p----d~~t~~~ll~~~~~~~~~~~a~~~ 163 (512)
+..+|...|..+... ..-+..+...+..+|...+++++|.++|+.+....| +...|++.+--+-+. -+...
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456788888884443 344557788889999999999999999999998886 445666666433221 11222
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCC
Q 043142 164 HGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPD 240 (512)
Q Consensus 164 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 240 (512)
+.+-+-.--+..+.+|-++.+.|+-.++.+.|++.|++..+.| ..+|+.+..-+.....+|.|...|+......+-+
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 2221111225567899999999999999999999999988655 5788888888889999999999999987655555
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHH
Q 043142 241 HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLN 317 (512)
Q Consensus 241 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 317 (512)
-..|..+...|.++++++.|+-.|+.++ .+.| +......+...+-+.|+.|+|+++++++ .+.| |+..----..
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 6677788899999999999999999987 6788 6777788888999999999999999998 3333 3333334455
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 318 SCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 318 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
.+...+++++|...++++.+.-|++...|..+...|.+.|+.+.|..-|.-+.+.+.+
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 6777899999999999999999999999999999999999999999999887765543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-11 Score=122.22 Aligned_cols=296 Identities=12% Similarity=0.028 Sum_probs=191.8
Q ss_pred HHHHHHHHH--HhcCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 40 LWNVLIRAY--AWNGPYEVAIELYYRLLEIGLVPDNF-TFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 40 ~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
....+.++. ...|+++.|.+.+.+..+. .|+.. .+-....+....|+.+.|.+.+....+....+...+.-....
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence 344455554 3468999999998887664 34433 333445667778999999999988876542222334444577
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHH-------Hh
Q 043142 117 MYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMY-------AK 188 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y-------~~ 188 (512)
.+...|+++.|...++.+.+..|+. ..+..+...+...|+++.+.+.+..+.+.+..+.......-..++ ..
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999998888844 467777888888899999988888888886543332211111111 12
Q ss_pred cCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHH-HH-HHHHHHHhcCCCHHHHHHH
Q 043142 189 CGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHI-TF-VGVLSACSRGGLFDEGRMF 263 (512)
Q Consensus 189 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~-t~-~~ll~a~~~~g~~~~a~~~ 263 (512)
....+...+.++..++ .+...+..+...+...|+.++|.+++++..+..+++.. .+ ..........++.+.+.+.
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHH
Confidence 2223444445555543 36677777888888888888888888888776552221 11 1111122334667777777
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHh--C-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 043142 264 FESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQ--M-RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIE 337 (512)
Q Consensus 264 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 337 (512)
++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 322 ~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 322 IEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777664422222214556777777778888888887773 2 4567777777777777777888888777777654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.7e-11 Score=113.50 Aligned_cols=368 Identities=12% Similarity=0.092 Sum_probs=305.7
Q ss_pred hHHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHh
Q 043142 8 VLATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACS 84 (512)
Q Consensus 8 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 84 (512)
.+|+.-...|.+.+.++-|+.+|....+ .+...|......--..|..++-..+|++....- +-....|-...+...
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 3677777888888888888888887654 366788877766667799999999999998753 223445555566677
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHH
Q 043142 85 ALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELH 164 (512)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 164 (512)
..|++..|+.++.++.+.. +.+..+|-+-+..-....+++.|+.+|.+.....|+...|.--+..---+++.++|.+++
T Consensus 596 ~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred hcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 8899999999999998876 557889999999999999999999999999999898888877777777788999999999
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCH
Q 043142 165 GFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE--K-RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDH 241 (512)
Q Consensus 165 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~ 241 (512)
+..++. ++.-...|-.+...+-+.++++.|...|..-.+ | .+..|-.+...=-+.|.+-.|..++++....++-|.
T Consensus 675 Ee~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 675 EEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred HHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence 888876 455567888888999999999999999987654 3 357788888888888999999999999998888888
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHH
Q 043142 242 ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKL 321 (512)
Q Consensus 242 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 321 (512)
..|...+..=.+.|..++|..+..+..++ .+.+...|..-|.+..+.++-..+.+.+++.. -|....-++...+..
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~ 829 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWS 829 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHH
Confidence 99999999999999999999999998875 34477889999999999999888888888764 455566677777888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCceeeEE
Q 043142 322 HGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIE 384 (512)
Q Consensus 322 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~ 384 (512)
..+++.|.+.|.++++.+|++..+|..+...+...|.-++-.+++++..... |.-|..|..
T Consensus 830 e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~a 890 (913)
T KOG0495|consen 830 EKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQA 890 (913)
T ss_pred HHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHH
Confidence 8999999999999999999999999999999999999999999998876543 445556753
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-11 Score=111.57 Aligned_cols=329 Identities=14% Similarity=0.134 Sum_probs=239.2
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHccCCC----CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 043142 4 GFHPVLATKLVHLYSACDCLHNAHQLFDRIPQ----RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFA 79 (512)
Q Consensus 4 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 79 (512)
+-+..++..+|.+.+|....+.|.+++++... -+..+||.+|.+-.-. ...++..+|....+.||..|||++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 44677999999999999999999999998754 3778899998765432 337899999999999999999999
Q ss_pred HHHHhccCChHH----HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHH-HHHHHHhhhhC---------CC-ChhHH
Q 043142 80 LKACSALSAIEE----GRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVN-ARQVFDKILER---------DP-SEATL 144 (512)
Q Consensus 80 l~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~---------~p-d~~t~ 144 (512)
+++.++.|+++. |.+++.+|.+.|+.|...+|..+|..+.+-++..+ |..+...+... .| |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998765 56888999999999999999999999999888754 44444444321 14 44568
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcC----CCCc---hHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCchHHHHH
Q 043142 145 VTVISASADIAALPQGRELHGFSWRHR----FELN---VKVKTALVDMYAKCGLVKVARNLFEQLRE----KRVVSWNAM 213 (512)
Q Consensus 145 ~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~l 213 (512)
...++.|.+..+.+.|.+++..+.... +.|+ .+.|..+....+....++.-...|+.|.. ++..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 899999999999999999998776432 2333 34556677788888889999999998864 344555566
Q ss_pred HHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCC--------------------CHHHHH-HHHHHHHHhc
Q 043142 214 ITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGG--------------------LFDEGR-MFFESMVRDY 271 (512)
Q Consensus 214 i~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g--------------------~~~~a~-~~~~~~~~~~ 271 (512)
+.+....|+++-.-+++..+...|. -+...-.-++..+++.. ++.++. .--.++.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r--- 516 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR--- 516 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH---
Confidence 7777778888877777777776653 33333333333333322 011111 1111221
Q ss_pred CCCCChhHHHHHHHHHhccCChHHHHHHHHhC-------CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 043142 272 HIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-------RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 272 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
..+......++..-.+.|.|+.++|.++|.-. +..|......-|+.+..+.++...|..+++-+...+
T Consensus 517 ~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 517 AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 23445567788888999999999999988765 233444444466677788888999999998887765
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-11 Score=123.20 Aligned_cols=363 Identities=14% Similarity=0.101 Sum_probs=219.7
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHccCCCCC------chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcch--H
Q 043142 5 FHPVLATKLVHLYSACDCLHNAHQLFDRIPQRN------LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFT--F 76 (512)
Q Consensus 5 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~ 76 (512)
.||.+.|.|.+.|--.|+++.+..+...+...+ ..+|--+.++|-..|++++|...|.+.... .||.++ +
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence 456666666666666666666666665544321 234555666666667777776666655543 334333 3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC----ChHHHHHHHHhhhhCCC-ChhHHHHHHHHH
Q 043142 77 PFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCS----CVVNARQVFDKILERDP-SEATLVTVISAS 151 (512)
Q Consensus 77 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~p-d~~t~~~ll~~~ 151 (512)
.-+...+...|+++.+...|+.+.+.- +.+..+.-.|...|+..+ ..+.|..+..+..+..| |...|..+...+
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 334555666666777766666666653 344455555555555553 34556666655555544 334455444444
Q ss_pred hccCChHHHHHHHHHH----HHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------Cc-------hHHHHH
Q 043142 152 ADIAALPQGRELHGFS----WRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK-------RV-------VSWNAM 213 (512)
Q Consensus 152 ~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-------~~-------~~~~~l 213 (512)
-. ++...+...+..+ ...+-.+.+.+.|.+...+...|++++|...|...... |. .-|| +
T Consensus 425 e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-l 502 (1018)
T KOG2002|consen 425 EQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-L 502 (1018)
T ss_pred Hh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-H
Confidence 33 3333334444333 33444566677777777777777777777777665422 11 1222 3
Q ss_pred HHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCh
Q 043142 214 ITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRL 293 (512)
Q Consensus 214 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 293 (512)
...+-..++.+.|.+.|..+....+.=...|..++......+...+|...++..... ...++..++.+...+.+...+
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~--d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI--DSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc--ccCCcHHHHHHHHHHHhhhhh
Confidence 334445566777777777776655433344444543333456677777777777642 233455555666677777777
Q ss_pred HHHHHHHHhC----CCCCCHhHHHHHHHHHH------------HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc
Q 043142 294 DEACDLIMQM----RVKPDPGVWGALLNSCK------------LHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAA 357 (512)
Q Consensus 294 ~~A~~~~~~m----~~~p~~~~~~~ll~~~~------------~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 357 (512)
..|.+-|+.+ ...+|..+.-+|...|. ..+..++|+++|.++++.+|.|.-+-+.+.-+++..|
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc
Confidence 7776644433 23466666666666553 2345788999999999999998777778888899999
Q ss_pred ChhHHHHHHHHHHhCCC
Q 043142 358 NWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 358 ~~~~a~~~~~~m~~~g~ 374 (512)
++.+|..+|..+++...
T Consensus 661 ~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATS 677 (1018)
T ss_pred CchHHHHHHHHHHHHHh
Confidence 99999999999988755
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=135.21 Aligned_cols=48 Identities=15% Similarity=0.123 Sum_probs=0.0
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhh
Q 043142 85 ALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKI 134 (512)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 134 (512)
..++.+.|.+.++++.+.+ +.++..+..++.. ...+++++|.+++...
T Consensus 56 ~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~ 103 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKA 103 (280)
T ss_dssp --------------------------------------------------
T ss_pred ccccccccccccccccccc-ccccccccccccc-cccccccccccccccc
Confidence 3344444444444444333 1123333333333 3444444444444433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.3e-13 Score=127.60 Aligned_cols=197 Identities=16% Similarity=0.095 Sum_probs=146.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHH---HHHHHHH
Q 043142 143 TLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNA---MITGYAM 219 (512)
Q Consensus 143 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~---li~~~~~ 219 (512)
||-.+.+.++-.++.+.|.+.|.++++.. +-...+|+.+..-+.....+|+|...|+.....|...||+ +...|.+
T Consensus 423 sWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 423 SWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence 44444444444444444444444444322 1245666767777777778888888888887777655544 6778899
Q ss_pred cCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHH
Q 043142 220 HGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACD 298 (512)
Q Consensus 220 ~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 298 (512)
+++.+.|+-.|++..+-++.+.+....+...+.+.|+.|+|+++++++. .++| |+..---.+..+...+++++|+.
T Consensus 502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~~~~~il~~~~~~~eal~ 578 (638)
T KOG1126|consen 502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKYHRASILFSLGRYVEALQ 578 (638)
T ss_pred cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHHHHHHHHHhhcchHHHHH
Confidence 9999999999999888877788888888888899999999999999887 4566 55555556667888899999999
Q ss_pred HHHhCC-CCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 299 LIMQMR-VKPDPG-VWGALLNSCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 299 ~~~~m~-~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
.+++.+ +.|+.. .+..+...|.+.|+.+.|+.-|.-+.+++|.-.
T Consensus 579 ~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 579 ELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 999883 556554 778888899999999999999999999998744
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-11 Score=114.93 Aligned_cols=213 Identities=15% Similarity=0.117 Sum_probs=172.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHH
Q 043142 154 IAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLF 230 (512)
Q Consensus 154 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 230 (512)
.|+.-.+.+-++..++....+ ...|--+..+|....+.++..+.|+...+- +..+|.--...+.-.+++++|..-|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 567777888888887765332 333677778899999999999999887653 4567777777777788999999999
Q ss_pred HHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-
Q 043142 231 EKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD- 308 (512)
Q Consensus 231 ~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~- 308 (512)
++.+...+.+...|.-+..+..+.+.++++...|+..+++ ++--+.+|+.....+...+++++|.+.|+.. .++|+
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 9998887788888888888888999999999999999765 4446789999999999999999999999876 34443
Q ss_pred --------HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 309 --------PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 309 --------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
+.+-.+++..-. .+++..|.++++++++++|....+|..|...-...|+.++|+++|++-.
T Consensus 496 ~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 222233332223 3899999999999999999999999999999999999999999998754
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.3e-12 Score=125.32 Aligned_cols=269 Identities=13% Similarity=0.084 Sum_probs=199.3
Q ss_pred hCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhC-----CCChh-----H-HHHHHHHHhccCChHHHHHHHHHHHHc
Q 043142 102 NKWETDVFVGAALIDMYAKCSCVVNARQVFDKILER-----DPSEA-----T-LVTVISASADIAALPQGRELHGFSWRH 170 (512)
Q Consensus 102 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~pd~~-----t-~~~ll~~~~~~~~~~~a~~~~~~~~~~ 170 (512)
.+-++.+.+.|.+...+...|+++.|...|+..... ++|.. | --.+....-..++.+.|.+.|..+++.
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 344466677788888888888888888888877654 23331 2 223344445677888888888888875
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCHHHHH
Q 043142 171 RFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFV 245 (512)
Q Consensus 171 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~ 245 (512)
. +.-+..|--|..+.-..+...+|...+..... .++..|..+...|.....+..|..-|....+.-. +|+.+..
T Consensus 526 h-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysli 604 (1018)
T KOG2002|consen 526 H-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLI 604 (1018)
T ss_pred C-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHH
Confidence 3 22233333333333344677788888887654 4577888888888888888888887777755433 7888887
Q ss_pred HHHHHHhc------------CCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHh
Q 043142 246 GVLSACSR------------GGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQMR--VKPDPG 310 (512)
Q Consensus 246 ~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~ 310 (512)
+|...|.. .+..+.|+++|.++++ ..| |...-+.+.-.++..|++.+|.++|.+.. ..-...
T Consensus 605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d 681 (1018)
T KOG2002|consen 605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED 681 (1018)
T ss_pred HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc
Confidence 88776543 2457788899998874 466 88888899999999999999999999883 223456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIELE--PHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
+|-.+...|...|++..|+++|+..++.. .+++.....|..++.+.|++.+|.+.........+
T Consensus 682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999998743 44677888999999999999999999887766543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.8e-11 Score=110.21 Aligned_cols=358 Identities=13% Similarity=0.148 Sum_probs=266.6
Q ss_pred ccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHH
Q 043142 19 ACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRI 95 (512)
Q Consensus 19 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 95 (512)
.++++..|+.+|++... ++...|-.-+..=.++..+..|..++++.+..=...|.. |--.+-.--..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHH
Confidence 45778889999988654 678888888888889999999999999987743333333 22333344567889999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHc-C-CC
Q 043142 96 HEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRH-R-FE 173 (512)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-~~ 173 (512)
|+.-.+- .|+...|++.|+.-.+...++.|..++++..-..|+..+|.-...---+.|....++.+|..+++. | -.
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 9887754 789999999999999999999999999998888888888888887778888888888888877763 2 11
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhc----CC----------------------------------------CC---
Q 043142 174 LNVKVKTALVDMYAKCGLVKVARNLFEQL----RE----------------------------------------KR--- 206 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m----~~----------------------------------------~~--- 206 (512)
.+...+++....=.++..++.|.-+|.-. ++ .|
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 22334455555445566666666665432 11 11
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCH-------HHHHHHHHHH---hcCCCHHHHHHHHHHHHHhcCCCC-
Q 043142 207 VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDH-------ITFVGVLSAC---SRGGLFDEGRMFFESMVRDYHIDP- 275 (512)
Q Consensus 207 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~p- 275 (512)
-.+|--.+..-...|+.+...++|++....-+|-. ..|.-+=.+| ....+++.+.++|+..++ +-|
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~---lIPH 398 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD---LIPH 398 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hcCc
Confidence 12566667666777899999999999887765522 1222222222 346788999999998873 456
Q ss_pred ChhHHHHHHHHH----hccCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 043142 276 SVQHYTCMVDLL----GHSGRLDEACDLIMQM-RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILS 350 (512)
Q Consensus 276 ~~~~~~~li~~~----~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 350 (512)
...++.-+--+| .++.++..|.+++... |.-|-..++...|..-.+.++++....++++.++.+|.+..+|...+
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 555666555444 4778999999999766 88899999999999989999999999999999999999999999999
Q ss_pred HHHHhccChhHHHHHHHHHHhCCCccCCceee
Q 043142 351 NIYARAANWEGVAKLRKLMIDRGIKKSIACSW 382 (512)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 382 (512)
..-...|+++.|..+|+........-.|..-|
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 99999999999999999988776544444444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-11 Score=121.33 Aligned_cols=281 Identities=13% Similarity=0.065 Sum_probs=206.9
Q ss_pred ccCChHHHHHHHccCCC--CCc-hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc--hHHHHHHHHhccCChHHHH
Q 043142 19 ACDCLHNAHQLFDRIPQ--RNL-FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNF--TFPFALKACSALSAIEEGR 93 (512)
Q Consensus 19 ~~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~ 93 (512)
..|+++.|++.+.+..+ |+. ..+-....++.+.|+++.|.+.|.+..+. .|+.. .-......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 46999999999988654 332 23334456677889999999999998764 35543 3333467788899999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCC-ChhHHHHH-HHHH---hccCChHHHHHHHHHHH
Q 043142 94 RIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDP-SEATLVTV-ISAS---ADIAALPQGRELHGFSW 168 (512)
Q Consensus 94 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p-d~~t~~~l-l~~~---~~~~~~~~a~~~~~~~~ 168 (512)
+.++.+.+.. |.+..+...+...|.+.|++++|.+.+..+.+.++ +...+..+ ..+. ...+..+.+...+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999986 56778899999999999999999999999998743 33333211 1111 22222333334555555
Q ss_pred HcCC---CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CchH---HHHHHHHHHHcCChHHHHHHHHHhHHCCCCC
Q 043142 169 RHRF---ELNVKVKTALVDMYAKCGLVKVARNLFEQLREK--RVVS---WNAMITGYAMHGHSTKALDLFEKMKDEVQPD 240 (512)
Q Consensus 169 ~~g~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 240 (512)
+... +.+...+..+...+...|+.++|.+++++..+. |... +..........++.+.+++.+++..+..+-|
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 4432 247889999999999999999999999998753 3221 1222223344577889999998888776644
Q ss_pred H--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 241 H--ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 241 ~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
. ....++...+.+.|++++|.++|+... .....|+...+..+...+.+.|+.++|.+++++.
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~-a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVA-ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhH-HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 667788999999999999999999532 2255899988999999999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-10 Score=115.87 Aligned_cols=351 Identities=14% Similarity=0.119 Sum_probs=262.3
Q ss_pred cCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHH
Q 043142 20 CDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIH 96 (512)
Q Consensus 20 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 96 (512)
.|++++|.+++.++.+ ++...|.+|...|-+.|+.++++..+--.-... +-|..-|..+.....+.|++++|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 4999999999999754 477899999999999999999988876554432 234567888888889999999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC------hhHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 043142 97 EDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS------EATLVTVISASADIAALPQGRELHGFSWRH 170 (512)
Q Consensus 97 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 170 (512)
.++++.. +++....---...|-+.|+...|..-|.++....|. ..+.-.++..+...++.+.|.+.+......
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999987 566666666788899999999999999999998872 223334566677777778888888877763
Q ss_pred -CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCc----------------------hHHHH----HHHHHHH
Q 043142 171 -RFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE----KRV----------------------VSWNA----MITGYAM 219 (512)
Q Consensus 171 -g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~----------------------~~~~~----li~~~~~ 219 (512)
+-..+...++.++.+|.+...++.|......+.. +|. .+|+. +.-++..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 2244556788899999999999999887766543 111 11211 2223334
Q ss_pred cCChHHHHHHHHHhHHCC--C-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHH
Q 043142 220 HGHSTKALDLFEKMKDEV--Q-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEA 296 (512)
Q Consensus 220 ~g~~~~A~~~~~~m~~~~--~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 296 (512)
.+..+....+.....+.. + -+...|.-+..++...|.+.+|..+|..+... ...-+..+|--+..+|...|..++|
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHH
Confidence 444444444444444444 4 56677889999999999999999999999743 2222577999999999999999999
Q ss_pred HHHHHhC-CCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------CCCCchHHHHHHHHHhccChhHHHHH
Q 043142 297 CDLIMQM-RVKPDPG-VWGALLNSCKLHGHVKLAELALEKLIELE---------PHDAGNYVILSNIYARAANWEGVAKL 365 (512)
Q Consensus 297 ~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---------p~~~~~~~~l~~~~~~~g~~~~a~~~ 365 (512)
.+.++.. ...|+.. .--+|-..+-+.|+.++|.+.++.+..-+ +++..........+...|+.++=..+
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999888 4556543 55667777889999999999999876333 22334555677888999999987777
Q ss_pred HHHHHhCC
Q 043142 366 RKLMIDRG 373 (512)
Q Consensus 366 ~~~m~~~g 373 (512)
-..|....
T Consensus 549 ~~~Lv~~~ 556 (895)
T KOG2076|consen 549 ASTLVDDF 556 (895)
T ss_pred HHHHHHHH
Confidence 77776543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-11 Score=114.68 Aligned_cols=263 Identities=15% Similarity=0.071 Sum_probs=216.0
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCC-ChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHH
Q 043142 104 WETDVFVGAALIDMYAKCSCVVNARQVFDKILERDP-SEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTAL 182 (512)
Q Consensus 104 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 182 (512)
...++.+.....+-+...+++.+..++++...+.+| ....+..-|..+...|+..+-..+=..+++. .|....+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 345666677777788889999999999999999886 4445555566778888877777666666665 46677899999
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHH
Q 043142 183 VDMYAKCGLVKVARNLFEQLREKR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDE 259 (512)
Q Consensus 183 i~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~ 259 (512)
.--|.-.|+..+|++.|.+...-| ...|-.+..+|+-.|..++|+..+...-+.-+-....+.-+..-|.+.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 999999999999999999877655 47999999999999999999999988766544222223335557888999999
Q ss_pred HHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhCC-----CCC----CHhHHHHHHHHHHHcCCHHHHH
Q 043142 260 GRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQMR-----VKP----DPGVWGALLNSCKLHGHVKLAE 329 (512)
Q Consensus 260 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p----~~~~~~~ll~~~~~~g~~~~A~ 329 (512)
|.++|.+.. ++-| |+...+-+.-.....+.+.+|..+|+..- ..+ -..+++.|..+|++.+.+++|+
T Consensus 399 Ae~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999886 7778 77788888777888899999999998761 111 2336888999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 330 LALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 330 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
..+++.+.+.|.++.+|..+.-.|...|+++.|.+.|.+..
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998765
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-10 Score=105.01 Aligned_cols=322 Identities=13% Similarity=0.116 Sum_probs=225.9
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh--HHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVF--VGAAL 114 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l 114 (512)
|...+-...-.+.+.|....|...|...... . +..|.+.+..+.-..+.+ +...+.. |.+.|.. .---+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~--P~~W~AWleL~~lit~~e----~~~~l~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--Y--PWFWSAWLELSELITDIE----ILSILVV-GLPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--C--CcchHHHHHHHHhhchHH----HHHHHHh-cCcccchHHHHHHH
Confidence 4333334444455667777788777776543 1 233443333322222222 2222222 2232211 11123
Q ss_pred HHHHHhCCChHHHHHHHHhhhhCC-CChhHHHHHHHHH-hccCChHHHHHHHHHHHHcCC--CCchHHHHHHHHHHHhcC
Q 043142 115 IDMYAKCSCVVNARQVFDKILERD-PSEATLVTVISAS-ADIAALPQGRELHGFSWRHRF--ELNVKVKTALVDMYAKCG 190 (512)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~~-pd~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g 190 (512)
..+|-...+.++++.-.......+ |+..-+.+.+.++ ....+++.|..+|+.+.++.. -.|..+|+.++-.--.+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 455666667777777777766664 4444444444443 567788888888888888742 124556666553332222
Q ss_pred CHH-HHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043142 191 LVK-VARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVR 269 (512)
Q Consensus 191 ~~~-~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 269 (512)
++. .|..++ .+.+--+.|...+.+-|.-.++.++|...|++..+.++.....|+.+..-|....+...|.+-++..+
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv- 391 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV- 391 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH-
Confidence 222 233332 22233355666677788888999999999999999888777889999999999999999999999998
Q ss_pred hcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 043142 270 DYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNY 346 (512)
Q Consensus 270 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 346 (512)
.+.| |-..|-.|.++|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|++.|.++...+-.+...+
T Consensus 392 --di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 392 --DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred --hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 5677 8899999999999999999999999998 4566 556999999999999999999999999999987788899
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHh
Q 043142 347 VILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 347 ~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
..|...|.+.++.++|.+.+++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999987665
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.6e-10 Score=106.82 Aligned_cols=365 Identities=15% Similarity=0.106 Sum_probs=290.1
Q ss_pred HHHHHHccCChHHHHHHHccCC---CCCchHHHHHHHHHHhcCCchHHHHHHHH----HHHCCCCCCcchHHHHHHHHhc
Q 043142 13 LVHLYSACDCLHNAHQLFDRIP---QRNLFLWNVLIRAYAWNGPYEVAIELYYR----LLEIGLVPDNFTFPFALKACSA 85 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~ 85 (512)
|.-+|++...++.|.+++.+.. +.+...|-+-...=-.+|+.+...++..+ +...|+..+...|..=..+|-.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 3345566677788888877654 34777887666666778888888877665 3456888888888888888888
Q ss_pred cCChHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHH
Q 043142 86 LSAIEEGRRIHEDVIRNKWET--DVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRE 162 (512)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~ 162 (512)
.|..-.+..|...++..|+.. --.+|+.-...+.+.+.++-|+.+|....+..|.. ..|......--..|..+.-..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 888888888888888777643 24578888889999999999999999999888744 567777777677889999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCC
Q 043142 163 LHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQP 239 (512)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 239 (512)
+++.++..- +-....|-....-+-..|++..|+.++...-+. +...|.+-+..-..+.+++.|..+|.+..... |
T Consensus 572 llqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~s-g 649 (913)
T KOG0495|consen 572 LLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS-G 649 (913)
T ss_pred HHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC-C
Confidence 999988874 445556666677778899999999999887653 35679888999999999999999999887532 6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGALLN 317 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~ 317 (512)
+...|..-+..-...+..++|.++++..++.+ +--...|..+...+-+.++++.|.+.+..- +.-|+.. .|-.|..
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 77777766666677899999999999998653 223567888889999999999998887655 4556654 8888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCceeeE
Q 043142 318 SCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWI 383 (512)
Q Consensus 318 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 383 (512)
.--+.|++-+|..++++..-.+|.+...|...+.+-.+.|+.+.|..+..+..+.- |..|.-|.
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWa 791 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWA 791 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHH
Confidence 88888999999999999999999999999999999999999999998887665432 44555664
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-10 Score=102.19 Aligned_cols=264 Identities=13% Similarity=0.141 Sum_probs=148.3
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCC--hhHHHHHHHHHHhCCChHH
Q 043142 50 WNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNK-WETD--VFVGAALIDMYAKCSCVVN 126 (512)
Q Consensus 50 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~ 126 (512)
-.++.++|.++|-+|.+.. +-+..+-.+|.+.+.+.|..+.|+.+|+.+.++. ++.+ ......|..-|.+.|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3578899999999998742 1123355667788899999999999999888752 1111 2344567778888999999
Q ss_pred HHHHHHhhhhCC-CChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043142 127 ARQVFDKILERD-PSEATLVTVISASADIAALPQGRELHGFSWRHRFELN----VKVKTALVDMYAKCGLVKVARNLFEQ 201 (512)
Q Consensus 127 A~~~~~~m~~~~-pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~ 201 (512)
|..+|..+.+.+ --....-.|+..|-...++++|..+-..+.+.+-.+. ...|.-|...+....+++.|..++.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999998886632 2334555666666666666666666666665543322 12333344444445555555555555
Q ss_pred cCCCC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCh
Q 043142 202 LREKR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSV 277 (512)
Q Consensus 202 m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 277 (512)
..+.| +..--.+...+...|+++.|.+.++...+.++ --..+...|..+|.+.|+.+++...+..+.+. .+..
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~ 282 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGA 282 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCc
Confidence 44332 22222233445555555555555555555544 44444555555555555555555555555432 2333
Q ss_pred hHHHHHHHHHhccCChHHHHHHH-HhCCCCCCHhHHHHHHH
Q 043142 278 QHYTCMVDLLGHSGRLDEACDLI-MQMRVKPDPGVWGALLN 317 (512)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~ 317 (512)
..-..+.+......-.+.|...+ ++..-+|+...+..|+.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~ 323 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMD 323 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHH
Confidence 33333333333333333333332 22333455444444443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.3e-10 Score=100.66 Aligned_cols=279 Identities=14% Similarity=0.096 Sum_probs=146.1
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 043142 51 NGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQV 130 (512)
Q Consensus 51 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 130 (512)
.|+|.+|.++..+-.+.+-.| ...|..-..+.-+.|+.+.+-+++.++-+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 467777777776665554333 1234444555666677777777776666653345556666666666667777777766
Q ss_pred HHhhhhCCCC-hhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCch-------HHHHHHHHHHHhcCCHHHHHHHHHhc
Q 043142 131 FDKILERDPS-EATLVTVISASADIAALPQGRELHGFSWRHRFELNV-------KVKTALVDMYAKCGLVKVARNLFEQL 202 (512)
Q Consensus 131 ~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~~m 202 (512)
.+++.+..|. .........+|.+.|++.....+...+.+.|.-.+. .+++.+++-....+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6666666553 334455556666666666666666666666544332 23344444333333333333344444
Q ss_pred CC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChh
Q 043142 203 RE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQ 278 (512)
Q Consensus 203 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 278 (512)
++ .++..-.+++.-+.+.|+.++|.++..+..+..- |. ....-.+.+.++.+.-++..+.-.+.++..| .
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 32 2333344444455555555555555555544443 33 1112233444444444444444444333333 3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGVWGALLNSCKLHGHVKLAELALEKLI 336 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 336 (512)
.+.+|...|.+.+.+.+|.+.|+.. +.+|+..+|+.+..++.+.|+.++|.+..++.+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4445555555555555555555543 444555555555555555555555555555544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.3e-11 Score=107.95 Aligned_cols=199 Identities=16% Similarity=0.144 Sum_probs=166.1
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHH
Q 043142 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSA 250 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a 250 (512)
.....+..+...|.+.|++++|...|++..+. +...+..+...|...|++++|.+.+++..+..+.+...+..+...
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 34567778889999999999999999887542 356788888899999999999999999988777666778888889
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHH
Q 043142 251 CSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLA 328 (512)
Q Consensus 251 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A 328 (512)
+...|++++|...++...+..........+..+...+.+.|++++|...+++. ...|+ ...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999753222224567777888999999999999999887 33443 55788888999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 329 ELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 329 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
...++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999988888888888999999999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-10 Score=100.15 Aligned_cols=290 Identities=10% Similarity=0.091 Sum_probs=223.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh------hHHHHHHHHHhccCChHH
Q 043142 86 LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE------ATLVTVISASADIAALPQ 159 (512)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~------~t~~~ll~~~~~~~~~~~ 159 (512)
.++.++|.+.|-+|.+.. +.+..+.-+|.+.|-+.|..|.|+++.+.+.++ ||. .....|..-|...|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 468899999999999854 445667778999999999999999999988776 332 344556667788999999
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc--------hHHHHHHHHHHHcCChHHHHHHHH
Q 043142 160 GRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV--------VSWNAMITGYAMHGHSTKALDLFE 231 (512)
Q Consensus 160 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~ 231 (512)
|+.+|..+.+.+ ..-.....-|+..|-...+|++|.++-+++.+.+. ..|.-+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999998755 22344666789999999999999999887664332 356667777777889999999999
Q ss_pred HhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh
Q 043142 232 KMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG 310 (512)
Q Consensus 232 ~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 310 (512)
+..+..+.....=..+.......|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++ ...+...
T Consensus 205 kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 205 KALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 998877755555556778889999999999999999755 33334677888999999999999999999877 4455555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH---HhccChhHHHHHHHHHHhCCCccCCce
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIY---ARAANWEGVAKLRKLMIDRGIKKSIAC 380 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~g~~~~~~~ 380 (512)
.-..+-..-....-.+.|...+.+-+...|.-. .+.-|+..- +.-|++.+....++.|....++..|.+
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 556666666666667888888888888888543 444555543 344668888999999988777766643
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-09 Score=98.50 Aligned_cols=276 Identities=14% Similarity=0.122 Sum_probs=212.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhC--CCChhHHHHHHHHHhccCChHHHHH
Q 043142 85 ALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILER--DPSEATLVTVISASADIAALPQGRE 162 (512)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~pd~~t~~~ll~~~~~~~~~~~a~~ 162 (512)
..|++.+|++....-.+.+- .....|..-..+.-..|+.+.|-..+.+..+. +++.....+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 35899999999998777763 33445555667788899999999999999888 4555566677777888999999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc-----------hHHHHHHHHHHHcCChHHHHHHHH
Q 043142 163 LHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV-----------VSWNAMITGYAMHGHSTKALDLFE 231 (512)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~ 231 (512)
-...+.+.+ +-++.+......+|.+.|++.....++..+.+.++ .+|+.++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999888876 45677888899999999999999999999987543 467777776665555555555666
Q ss_pred HhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHH----hCCCCC
Q 043142 232 KMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIM----QMRVKP 307 (512)
Q Consensus 232 ~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~p 307 (512)
.....-..++..-.+++.-+.+.|+.++|.++..+..++ +.+|+. ..++ ...+.++...-++..+ ..+..|
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CRLI-PRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HHHH-hhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 665443355666677888889999999999999988765 566652 1122 2344555554444443 334334
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 308 DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
..+.+|..-|.+++.+.+|...|+.+++..|.. ..|..+..++.+.|+..+|.+++++-.
T Consensus 329 --~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 --LLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred --hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 688999999999999999999999999988854 699999999999999999999998865
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-12 Score=85.80 Aligned_cols=50 Identities=24% Similarity=0.557 Sum_probs=46.8
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 043142 36 RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSA 85 (512)
Q Consensus 36 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 85 (512)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-08 Score=93.06 Aligned_cols=347 Identities=13% Similarity=0.117 Sum_probs=166.5
Q ss_pred cCChHHHHHHHccCC--CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHH
Q 043142 20 CDCLHNAHQLFDRIP--QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHE 97 (512)
Q Consensus 20 ~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 97 (512)
.|++..|+++|++-. +|+..+|++.|..=.+.+.++.|..+|++..- +.|+..+|.-..+---+.|....+.++|+
T Consensus 154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 345555555554421 35555566665555555555566666555544 34555555555555555555555555555
Q ss_pred HHHHh-CC-CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh---HHHHHHHHHhccCChHHHHHH--------H
Q 043142 98 DVIRN-KW-ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA---TLVTVISASADIAALPQGREL--------H 164 (512)
Q Consensus 98 ~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~---t~~~ll~~~~~~~~~~~a~~~--------~ 164 (512)
..++. |- ..+..++.+....-.++..++.|.-+|.-....-|... .|.....---+.|+....... |
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 55443 10 01122333333333344445555555444333222221 111111111122222111111 1
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--c---hHHHHHH--------HHHHHcCChHHHHHHHH
Q 043142 165 GFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR--V---VSWNAMI--------TGYAMHGHSTKALDLFE 231 (512)
Q Consensus 165 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~---~~~~~li--------~~~~~~g~~~~A~~~~~ 231 (512)
+.+++.+ +.|-.+|--.+..-...|+.+...++|++....- . ..|.-.| -.=....+.+.+.++|+
T Consensus 312 E~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 312 EKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2222221 3344455555555556666666666666654211 0 1121111 11123455666666666
Q ss_pred HhHHCCCCCHHHHHHHHHHH----hcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCC
Q 043142 232 KMKDEVQPDHITFVGVLSAC----SRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK 306 (512)
Q Consensus 232 ~m~~~~~p~~~t~~~ll~a~----~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 306 (512)
...+.-+-...||..+=-.| .++.++..|.+++...+ |.-|-..++-..|+.=.+.+.+|....++++. ...
T Consensus 391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 66553223344444432222 24556666666666655 55666666666666666666666666666655 333
Q ss_pred CC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 307 PD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHD--AGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 307 p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
|. -.+|.-...--...|+.+.|..+|+-+++....+ ...|-..|+.-...|.++.|..+++++.++
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 43 3356555555556666666666666665543111 123444444455666666666666666554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-10 Score=115.28 Aligned_cols=243 Identities=11% Similarity=-0.002 Sum_probs=178.8
Q ss_pred CChHHHHHHHHhhhhCCCChh-HHHHHHHHHh---------ccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 043142 122 SCVVNARQVFDKILERDPSEA-TLVTVISASA---------DIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGL 191 (512)
Q Consensus 122 g~~~~A~~~~~~m~~~~pd~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 191 (512)
+++++|...|++..+.+|+.. .+..+..++. ..+++++|...++++++.. +.+...+..+..++...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 346789999999999998764 3444433332 2345788999999988875 4567788888889999999
Q ss_pred HHHHHHHHHhcCCCC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 192 VKVARNLFEQLREKR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 192 ~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
+++|...|++..+.+ ...|..+...+...|++++|+..+++..+..+.+...+..++..+...|++++|...++++.
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 999999999976533 46788888999999999999999999988877333333344445666899999999999886
Q ss_pred HhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC
Q 043142 269 RDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGALLNSCKLHGHVKLAELALEKLIELE---PHD 342 (512)
Q Consensus 269 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---p~~ 342 (512)
+. ..| +...+..+..+|...|+.++|...++++ +..|+.. .++.+...+...| +.|...++++.+.. |.+
T Consensus 434 ~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~ 509 (553)
T PRK12370 434 SQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN 509 (553)
T ss_pred Hh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC
Confidence 43 135 4556777888899999999999999887 3445544 4555556667776 47888788777643 444
Q ss_pred CchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 343 AGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
+. .+...|.-.|+-+.+... +++.+.|
T Consensus 510 ~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 510 PG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 33 256667777887777766 7777654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7e-10 Score=108.53 Aligned_cols=190 Identities=17% Similarity=0.246 Sum_probs=134.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-------CC----chHHHHHHHHHHHcCChHHHHHHHHHhHH-----CCC--CCHH
Q 043142 181 ALVDMYAKCGLVKVARNLFEQLRE-------KR----VVSWNAMITGYAMHGHSTKALDLFEKMKD-----EVQ--PDHI 242 (512)
Q Consensus 181 ~li~~y~~~g~~~~A~~~~~~m~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~--p~~~ 242 (512)
.+..+|...+++.+|..+|+++.. ++ ..+++.|..+|.+.|++++|...+++..+ .+. |...
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 455566666666666666665531 11 24566666667777776666666555422 122 3333
Q ss_pred -HHHHHHHHHhcCCCHHHHHHHHHHHHHhcC--CCCC----hhHHHHHHHHHhccCChHHHHHHHHhC---------CCC
Q 043142 243 -TFVGVLSACSRGGLFDEGRMFFESMVRDYH--IDPS----VQHYTCMVDLLGHSGRLDEACDLIMQM---------RVK 306 (512)
Q Consensus 243 -t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~ 306 (512)
-++.+...|+..+++++|..+++...+.+. +.++ ..+++.|...|...|++.+|+++++++ +..
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 355666778888999999988887765543 2222 467899999999999999999999877 112
Q ss_pred CC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC---CCchHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 307 PD-PGVWGALLNSCKLHGHVKLAELALEKLIEL----EPH---DAGNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 307 p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
+. ....+.|...|.+.+++++|.++|.+.... +|. ...+|..|+.+|...|++++|.++.+.+.
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 336788889999999999999999887653 444 44578899999999999999999998876
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-08 Score=99.61 Aligned_cols=368 Identities=18% Similarity=0.166 Sum_probs=258.6
Q ss_pred CCCchhHHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcch-HHH
Q 043142 3 FGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFT-FPF 78 (512)
Q Consensus 3 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ 78 (512)
++.|+.+|-.|.-+...+|+++.+-+.|++... .....|+.+...|...|.-..|+.+.+.-......|+..+ +-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 457899999999999999999999999998654 3456899999999999999999999988755433354433 333
Q ss_pred HHHHHh-ccCChHHHHHHHHHHHHh--CC--CCChhHHHHHHHHHHhC-----------CChHHHHHHHHhhhhCCCC-h
Q 043142 79 ALKACS-ALSAIEEGRRIHEDVIRN--KW--ETDVFVGAALIDMYAKC-----------SCVVNARQVFDKILERDPS-E 141 (512)
Q Consensus 79 ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~pd-~ 141 (512)
.-..|. +.+.++++..+-.+++.. +. ...+..|-.+.-+|... ....++.+.+++..+.+|+ .
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 334444 457777887777777662 11 12344455555555432 1245678888888777753 3
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C-------------
Q 043142 142 ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK--R------------- 206 (512)
Q Consensus 142 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~------------- 206 (512)
.....+.--++..++++.|.+...+..+.+-..+...|..|.-.+...+++.+|+.+.+...+. +
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 3333344456778899999999999999877888999999999999999999999988764321 0
Q ss_pred --------chHHHHHHHHHH------Hc-----------------CChHHHHHHHHHhHH--------CC----------
Q 043142 207 --------VVSWNAMITGYA------MH-----------------GHSTKALDLFEKMKD--------EV---------- 237 (512)
Q Consensus 207 --------~~~~~~li~~~~------~~-----------------g~~~~A~~~~~~m~~--------~~---------- 237 (512)
+.+...++...- +. .+..+|....+++.. .+
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 011111111111 00 112222222222100 00
Q ss_pred -C-CCH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC
Q 043142 238 -Q-PDH------ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP 307 (512)
Q Consensus 238 -~-p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 307 (512)
+ |+. ..+......+.+.+..++|...+.+.. ++.| ....|......+...|.+++|.+.|... -+.|
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 1 121 123344556777788888887777664 4555 6677777778889999999999888766 5677
Q ss_pred CHh-HHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 308 DPG-VWGALLNSCKLHGHVKLAEL--ALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 308 ~~~-~~~~ll~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
+.+ +..++...+...|+...|.. ++..+++.+|.++..|..|..++-+.|+.++|.+.|+...+..
T Consensus 716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 665 88899999999999988888 9999999999999999999999999999999999999877643
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.4e-10 Score=99.67 Aligned_cols=192 Identities=14% Similarity=0.102 Sum_probs=100.4
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 043142 107 DVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDM 185 (512)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 185 (512)
....+..+...|.+.|++++|...|++..+.+|+. ..+..+...+...|++++|.+.+....+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34566677777888888888888888777666543 344555555566666666666666665543 2233445555555
Q ss_pred HHhcCCHHHHHHHHHhcCCC-----CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHH
Q 043142 186 YAKCGLVKVARNLFEQLREK-----RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEG 260 (512)
Q Consensus 186 y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a 260 (512)
|...|++++|.+.|++..+. ....+..+...+...|++++|...|.+.....+.+...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 56666666666665554321 1223344444455555555555555554443333333444444444555555555
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHH
Q 043142 261 RMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIM 301 (512)
Q Consensus 261 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (512)
..++++..+. ...+...+..+...+...|+.++|..+.+
T Consensus 189 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 189 RAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5555544322 11123333334444444444444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-09 Score=112.05 Aligned_cols=256 Identities=11% Similarity=0.020 Sum_probs=180.4
Q ss_pred chHHHHHHHHhc-----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH---------hCCChHHHHHHHHhhhhCCC
Q 043142 74 FTFPFALKACSA-----LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYA---------KCSCVVNARQVFDKILERDP 139 (512)
Q Consensus 74 ~t~~~ll~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~~p 139 (512)
..|...+.+-.. .+++++|.+.+++.++.. +.+...|..+..+|. ..+++++|...+++..+.+|
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP 335 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH 335 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC
Confidence 445555555321 234678888999888774 334556666655544 23457899999999999988
Q ss_pred Ch-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc---hHHHHHHH
Q 043142 140 SE-ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV---VSWNAMIT 215 (512)
Q Consensus 140 d~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~---~~~~~li~ 215 (512)
+. .++..+...+...|++++|...++++++.+ +.+...+..+...|...|++++|...|++..+.++ ..+..++.
T Consensus 336 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~ 414 (553)
T PRK12370 336 NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW 414 (553)
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 54 566677777888999999999999998876 44567788889999999999999999999865432 23344455
Q ss_pred HHHHcCChHHHHHHHHHhHHCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCh
Q 043142 216 GYAMHGHSTKALDLFEKMKDEVQP-DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRL 293 (512)
Q Consensus 216 ~~~~~g~~~~A~~~~~~m~~~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~ 293 (512)
.+...|++++|+..+++......| +...+..+..++...|+.++|...+..+... .| +....+.+...|.+.|
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g-- 489 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNS-- 489 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccH--
Confidence 567789999999999998776554 4445667778888999999999999887533 44 3445566666777777
Q ss_pred HHHHHHHHhC----CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 043142 294 DEACDLIMQM----RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 294 ~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
++|...++.+ ...|....+ +-..+.-+|+.+.+..+ +++.+.+
T Consensus 490 ~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4777666655 233433444 33445567777777666 7776654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-10 Score=114.75 Aligned_cols=250 Identities=16% Similarity=0.204 Sum_probs=148.1
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 043142 139 PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYA 218 (512)
Q Consensus 139 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~ 218 (512)
|+.+||..++..|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. ++...+|..+..+|.
T Consensus 23 PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ayr 94 (1088)
T KOG4318|consen 23 PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAYR 94 (1088)
T ss_pred CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHHH
Confidence 33333444444444444443333 4444444445556666667776666666666554 556667777777777
Q ss_pred HcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHH
Q 043142 219 MHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACD 298 (512)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 298 (512)
++|+... ++..++ -...+...++..|--..-..++..+.-..+.-||.. ..+....-.|.++.+++
T Consensus 95 ~hGDli~-fe~veq----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 95 IHGDLIL-FEVVEQ----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLK 160 (1088)
T ss_pred hccchHH-HHHHHH----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHH
Confidence 7777544 222222 122344455555555555555554432223344433 34445566677788888
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccC
Q 043142 299 LIMQMRVKPDPGVWGALLNSCKLHG-HVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKS 377 (512)
Q Consensus 299 ~~~~m~~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 377 (512)
++..+|...-......+++-+.... .+++-....+...+ -+++.+|..+...-..+|+.+-|..++.+|+++|+...
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 8877753221112222344444333 33444444444444 34678999999999999999999999999999999999
Q ss_pred CceeeEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCc
Q 043142 378 IACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTES 427 (512)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~ 427 (512)
+.+.|..+ .|... ...++.+.+.|++.|+.|+..+
T Consensus 239 ~HyFwpLl--------~g~~~-------~q~~e~vlrgmqe~gv~p~seT 273 (1088)
T KOG4318|consen 239 AHYFWPLL--------LGINA-------AQVFEFVLRGMQEKGVQPGSET 273 (1088)
T ss_pred cccchhhh--------hcCcc-------chHHHHHHHHHHHhcCCCCcch
Confidence 99999643 33211 1234678899999999999854
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-08 Score=95.71 Aligned_cols=214 Identities=14% Similarity=0.095 Sum_probs=167.6
Q ss_pred CCChHHHHHHHHhhhhCCCChhH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 043142 121 CSCVVNARQVFDKILERDPSEAT-LVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLF 199 (512)
Q Consensus 121 ~g~~~~A~~~~~~m~~~~pd~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 199 (512)
+|+.-.|..-|+...+.+|.... |.-+..+|.+..+.++..+.|..+.+.+ +-++.+|.--..++.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665555 7778888999999999999999999876 445667777778888889999999999
Q ss_pred HhcCCCC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 043142 200 EQLREKR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS 276 (512)
Q Consensus 200 ~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 276 (512)
++..+-+ +..|-.+.-+.-+.+++++++..|++.+..-+.-+..|+.....+...++++.|.+.|+..++ +.|+
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~ 494 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPR 494 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccc
Confidence 9987654 456666666777888999999999999988776667788888999999999999999999873 3554
Q ss_pred ---------hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 043142 277 ---------VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDP-GVWGALLNSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 277 ---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
+.+.-+++..- -.+++..|.+++++. .+.|.- ..|.+|...-.+.|+.++|+++|++...+-
T Consensus 495 ~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred cccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 11222222222 348999999999888 555644 489999999999999999999999988764
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-07 Score=86.26 Aligned_cols=362 Identities=12% Similarity=0.057 Sum_probs=238.7
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHccCCCC-CchHHHHHHHHHHhcCC--chHH-------------HHHHHHHHHCC--
Q 043142 7 PVLATKLVHLYSACDCLHNAHQLFDRIPQR-NLFLWNVLIRAYAWNGP--YEVA-------------IELYYRLLEIG-- 68 (512)
Q Consensus 7 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~--~~~A-------------~~~~~~m~~~g-- 68 (512)
...--..+..|...++-+.|.....+.+++ ...--|.|+.-+-+.|. .++. +....-..+.+
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~ 176 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVN 176 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhc
Confidence 334445677788888999999999888764 33344444444333331 2211 11111111211
Q ss_pred -------------CCCCcchHHHHHHHHhc--cCChHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 043142 69 -------------LVPDNFTFPFALKACSA--LSAIEEGRRIHEDVIRN-KWETDVFVGAALIDMYAKCSCVVNARQVFD 132 (512)
Q Consensus 69 -------------~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 132 (512)
+.|+..+....+.+++. .++-..+.+.+-.+... -++.|+....++.+.|...|+.++|...|+
T Consensus 177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 22333334444444433 34444455555444433 357788899999999999999999999999
Q ss_pred hhhhCCCChhH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---ch
Q 043142 133 KILERDPSEAT-LVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR---VV 208 (512)
Q Consensus 133 ~m~~~~pd~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~ 208 (512)
+....+|+..+ .....-.+.+.|+++....+...+.... +.+...|-.-........+++.|..+-++..+.+ +.
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~ 335 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE 335 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch
Confidence 99999887654 2222223356677777777766665432 1122222222333445677888888887766544 44
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHH-HHH
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMV-DLL 287 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~ 287 (512)
.|-.-...+.+.+++++|.-.|+..+...+-+...|..|+.+|...|.+.+|...-+...+.. ..+..+.+.+. ..+
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVL 413 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceee
Confidence 554445678889999999999999887777788899999999999999999988777765432 23444444431 222
Q ss_pred h-ccCChHHHHHHHHhC-CCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHH
Q 043142 288 G-HSGRLDEACDLIMQM-RVKPDPG-VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAK 364 (512)
Q Consensus 288 ~-~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 364 (512)
. ....-++|.+++++. .++|+.. ..+.+..-|...|..+.++.++++.+...|++ .....|.+.+.....+.+|.+
T Consensus 414 ~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred ccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHH
Confidence 2 223357788888776 6778765 66777778888999999999999999888865 588889999999999999999
Q ss_pred HHHHHHhC
Q 043142 365 LRKLMIDR 372 (512)
Q Consensus 365 ~~~~m~~~ 372 (512)
.|......
T Consensus 493 ~y~~ALr~ 500 (564)
T KOG1174|consen 493 YYYKALRQ 500 (564)
T ss_pred HHHHHHhc
Confidence 88876543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-09 Score=99.72 Aligned_cols=150 Identities=15% Similarity=0.134 Sum_probs=98.9
Q ss_pred HcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHH
Q 043142 219 MHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEAC 297 (512)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 297 (512)
..|+.++|++.|-++..--..+...+.-+.+.|....+..+|++++.+.. .+.| |+...+.|.+.|-+.|+-.+|.
T Consensus 536 ~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~---slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 536 ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN---SLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc---ccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 34444455444444432211344444555555666666666666666553 4455 7788888888888888888887
Q ss_pred HHHHh-CCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH-HHHhccChhHHHHHHHHHHhC
Q 043142 298 DLIMQ-MRVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSN-IYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 298 ~~~~~-m~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+..-. .+.-| +..+..-|...|....-+++|+..|+++.-..|.. .-|..++. .+.+.|++..|.++++....+
T Consensus 613 q~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~-~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 613 QCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ-SKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 76533 34333 45566667777777777889999999988777755 45655554 456889999999999988654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-11 Score=80.10 Aligned_cols=49 Identities=33% Similarity=0.582 Sum_probs=36.6
Q ss_pred CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhc
Q 043142 205 KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSR 253 (512)
Q Consensus 205 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~ 253 (512)
||+++||++|.+|++.|++++|.++|++|.+.|+ ||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 5667777777777777777777777777777777 777777777777764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-09 Score=96.91 Aligned_cols=229 Identities=14% Similarity=0.133 Sum_probs=140.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 043142 112 AALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGL 191 (512)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 191 (512)
+-+.++|.+.|-+.+|.+.|+...+..|-+.||..+-.+|.+...++.|..++.+-++. ++.++.........+-..++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 45666666666666666666666666565566666666666666666666665555543 23333333444444555555
Q ss_pred HHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 192 VKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 192 ~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
.++|.++|+...+. ++.+..++..+|.-.++++-|+..|+++.+.|..+...|+.+.-+|.-.+++|-++.-|++..
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 55555555544332 233333444445555555555555555555555444555555555554444444444444332
Q ss_pred HhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCC--HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 043142 269 RDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPD--PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNY 346 (512)
Q Consensus 269 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 346 (512)
.. -.+|+ ..+|-.|.......||+..|.+.|+-.+..+|++..++
T Consensus 386 st---------------------------------at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~eal 432 (478)
T KOG1129|consen 386 ST---------------------------------ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEAL 432 (478)
T ss_pred hh---------------------------------ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHH
Confidence 11 11232 23666677777788999999999999999999999999
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 347 VILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 347 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
+.|.-.-.+.|++++|..+++.......
T Consensus 433 nNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 433 NNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 9999999999999999999998876543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.21 E-value=4e-08 Score=97.51 Aligned_cols=283 Identities=15% Similarity=0.143 Sum_probs=186.9
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC---
Q 043142 46 RAYAWNGPYEVAIELYYRLLEIGLVPDNF-TFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC--- 121 (512)
Q Consensus 46 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--- 121 (512)
..+...|++++|++.++.-.. ..+|.. .+......+.+.|+.++|..++..+++.+ |.|..-|..|..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 345667777788777766433 233443 34445566777788888888888777775 34455555555554222
Q ss_pred --CChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 043142 122 --SCVVNARQVFDKILERDPSEATLVTVISASADIAAL-PQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNL 198 (512)
Q Consensus 122 --g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 198 (512)
.+.+....+++++.+..|.......+.-.+..-..+ ..+......+++.|+|+ +++.|-..|....+.+-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 246667778888777776655544333333221222 33556666777778654 677777777766555555555
Q ss_pred HHhcC----C--------------CCch--HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHH
Q 043142 199 FEQLR----E--------------KRVV--SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFD 258 (512)
Q Consensus 199 ~~~m~----~--------------~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~ 258 (512)
+.... . |... ++..+...|...|+.++|++.+++..+..+.....|..-...+-+.|+++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 54432 0 1112 33555677888999999999999988876655677888888999999999
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhCC---CCCCH------hHH--HHHHHHHHHcCCHH
Q 043142 259 EGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQMR---VKPDP------GVW--GALLNSCKLHGHVK 326 (512)
Q Consensus 259 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~~------~~~--~~ll~~~~~~g~~~ 326 (512)
+|...++... .+++ |-..-+-.+..+.|+|++++|.+++.... ..|-. ..| .....+|.+.|++.
T Consensus 246 ~Aa~~~~~Ar---~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 246 EAAEAMDEAR---ELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHH---hCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999885 4455 66666777888899999999999887773 11111 123 33456788999999
Q ss_pred HHHHHHHHHHh
Q 043142 327 LAELALEKLIE 337 (512)
Q Consensus 327 ~A~~~~~~~~~ 337 (512)
.|++-|..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 99888877765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.3e-09 Score=98.73 Aligned_cols=213 Identities=16% Similarity=0.135 Sum_probs=148.9
Q ss_pred CChHHHHHHHHHHHHcC-CCC--chHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHH
Q 043142 155 AALPQGRELHGFSWRHR-FEL--NVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALD 228 (512)
Q Consensus 155 ~~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~ 228 (512)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+. +...|+.+...|...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34556666666666532 222 2456777888889999999999999887643 46789999999999999999999
Q ss_pred HHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC--CCC
Q 043142 229 LFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM--RVK 306 (512)
Q Consensus 229 ~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~ 306 (512)
.|++..+..+.+..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|...|++. ...
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 999998876666778888888888999999999999988743 564332222223345667899999998654 223
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 307 PDPGVWGALLNSCKLHGHVKLAELALEKLI-------ELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 307 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
|+...| .......|+...+ +.++.+. +..|..+.+|..++..+.+.|++++|...|++..+.++
T Consensus 197 ~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 197 KEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred ccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 332222 2222334555443 2444444 34455667899999999999999999999998887654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-08 Score=95.82 Aligned_cols=278 Identities=15% Similarity=0.093 Sum_probs=210.1
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 043142 36 RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALI 115 (512)
Q Consensus 36 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 115 (512)
.|+...-.-..-+-..+++.+.+++++...+. .++....+..-|.++...|+..+-..+=.++++.- |..+.+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 46666666677778888999999999888765 34455556666667777787776666666666653 66778888888
Q ss_pred HHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHc--C-CCCchHHHHHHHHHHHhcCC
Q 043142 116 DMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRH--R-FELNVKVKTALVDMYAKCGL 191 (512)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g-~~~~~~~~~~li~~y~~~g~ 191 (512)
--|.-.|+..+|++.|.+....+|.- ..|.....+++..+..+.|...+..+-+. | ..|. .| +.--|.+.++
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--LY--lgmey~~t~n 395 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--LY--LGMEYMRTNN 395 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--HH--HHHHHHHhcc
Confidence 88888899999999999988887754 57888888899899999988888777653 2 2222 22 2344777889
Q ss_pred HHHHHHHHHhcC---CCCchHHHHHHHHHHHcCChHHHHHHHHHhHHC----CC--C-CHHHHHHHHHHHhcCCCHHHHH
Q 043142 192 VKVARNLFEQLR---EKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE----VQ--P-DHITFVGVLSACSRGGLFDEGR 261 (512)
Q Consensus 192 ~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--p-~~~t~~~ll~a~~~~g~~~~a~ 261 (512)
++.|.+.|.+.. ..|+...+-+.-.....+.+.+|..+|+..... .. + ...+++.|..+|.+.+.+++|+
T Consensus 396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999998764 345677777776667778888998888877522 11 1 4456888999999999999999
Q ss_pred HHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHHc
Q 043142 262 MFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGVWGALLNSCKLH 322 (512)
Q Consensus 262 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~ 322 (512)
..|++.+. ..| +..++.++.-.|...|+++.|.+.|.+. .++|+..+-..++..+...
T Consensus 476 ~~~q~aL~---l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 476 DYYQKALL---LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHH---cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99998874 345 8888999999999999999999999776 6788888777777766543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.3e-09 Score=88.40 Aligned_cols=163 Identities=17% Similarity=0.164 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHH
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLL 287 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 287 (512)
+...+.-+|.+.|+...|..-+++..+..+.+..++..+...|.+.|..+.|.+-|+..+ .+.| +..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHH
Confidence 344566788899999999999999988888788888889999999999999999999887 4577 677888888889
Q ss_pred hccCChHHHHHHHHhCCCCC---C-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHH
Q 043142 288 GHSGRLDEACDLIMQMRVKP---D-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVA 363 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m~~~p---~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 363 (512)
+..|++++|...|++.-..| . ..+|..+.-+..+.|+.+.|+..|++.++.+|+.+.+...+.....+.|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999998872222 2 3488888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 043142 364 KLRKLMIDRGI 374 (512)
Q Consensus 364 ~~~~~m~~~g~ 374 (512)
..++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99999887665
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-08 Score=93.58 Aligned_cols=213 Identities=14% Similarity=0.011 Sum_probs=132.4
Q ss_pred CCchHHHHHHHHHHHCC-CCCCc--chHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHH
Q 043142 52 GPYEVAIELYYRLLEIG-LVPDN--FTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNAR 128 (512)
Q Consensus 52 g~~~~A~~~~~~m~~~g-~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 128 (512)
+..+.++.-+.+++... ..|+. ..|..+...+...|+.++|...|.+.++.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666432 22222 345566666777788888888888777765 456677788888888888888888
Q ss_pred HHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC
Q 043142 129 QVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE-KR 206 (512)
Q Consensus 129 ~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~ 206 (512)
..|++..+.+|+. .++..+..++...|++++|.+.++...+.. |+..........+...++.++|...|.+... .+
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 8888887777753 456667777777788888888888777654 2222122222233456778888888855432 22
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHHhHHCC-------CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043142 207 VVSWNAMITGYAMHGHSTKALDLFEKMKDEV-------QPDHITFVGVLSACSRGGLFDEGRMFFESMVR 269 (512)
Q Consensus 207 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 269 (512)
...|.. ...+...|+..++ +.+..+.+.. +....+|..+...+.+.|++++|...|+...+
T Consensus 197 ~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 197 KEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred ccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233331 2223335555443 3444443221 12335677788888888888888888888864
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-08 Score=97.59 Aligned_cols=231 Identities=15% Similarity=0.128 Sum_probs=169.2
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHhhhhC--------CCChhHH-HHHHHHHhccCChHHHHHHHHHHHHc-----C-
Q 043142 107 DVFVGAALIDMYAKCSCVVNARQVFDKILER--------DPSEATL-VTVISASADIAALPQGRELHGFSWRH-----R- 171 (512)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~pd~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~-----g- 171 (512)
-..+...|..+|...|+++.|..+|....+. .|...+. ..+...|...+++++|..+|..++.. |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3445555777788888888888877776554 3444433 33666677778888888888777652 2
Q ss_pred -CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CCc-hHHHHHHHHHHHcCChHHHHHHHHHhHHC---
Q 043142 172 -FELNVKVKTALVDMYAKCGLVKVARNLFEQLRE----------KRV-VSWNAMITGYAMHGHSTKALDLFEKMKDE--- 236 (512)
Q Consensus 172 -~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 236 (512)
.+.-..+++.|..+|.+.|++++|...+++..+ +.+ ..++.++..+...+++++|..++++..+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 122245677778889999999888887776431 122 34666777888999999999998876432
Q ss_pred CC-CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-----CCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC--
Q 043142 237 VQ-PD----HITFVGVLSACSRGGLFDEGRMFFESMVRDY-----HIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-- 303 (512)
Q Consensus 237 ~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-- 303 (512)
-+ ++ ..+++.|...+...|++++|..+|++++... +..+ ....++-|...|.+.++..+|.++|.+.
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12 22 3678999999999999999999999987653 1123 3567788899999999999998888765
Q ss_pred ------CCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 043142 304 ------RVKPDPG-VWGALLNSCKLHGHVKLAELALEKLIE 337 (512)
Q Consensus 304 ------~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~ 337 (512)
+..|++. +|..|...|...|+++.|+++.+.+..
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2445654 899999999999999999999998874
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-07 Score=87.26 Aligned_cols=292 Identities=10% Similarity=0.018 Sum_probs=213.4
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCC-CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhCCChH
Q 043142 48 YAWNGPYEVAIELYYRLLEIGLVP-DNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFV-GAALIDMYAKCSCVV 125 (512)
Q Consensus 48 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~ 125 (512)
.+..++...|...+-.+.....-| |......+...+...|+..+|...|++..-.. |+... -....-.+.+.|+.+
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHh
Confidence 344566666666665554443444 45567888899999999999999999886543 33221 111222345778888
Q ss_pred HHHHHHHhhhhCC-CChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 043142 126 NARQVFDKILERD-PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE 204 (512)
Q Consensus 126 ~A~~~~~~m~~~~-pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 204 (512)
...++-..+...+ -....|..-+......++++.|..+-++.++.. +-++..+-.-...+...|+.++|.-.|+....
T Consensus 284 ~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 284 QDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred hHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 8888777776543 233334444445566788888888888877754 23344444445667788999999999988653
Q ss_pred ---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHH-HHHhc-CCCHHHHHHHHHHHHHhcCCCCC-hh
Q 043142 205 ---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVL-SACSR-GGLFDEGRMFFESMVRDYHIDPS-VQ 278 (512)
Q Consensus 205 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll-~a~~~-~g~~~~a~~~~~~~~~~~~~~p~-~~ 278 (512)
.+..+|..++..|...|++.+|.-+-+.....-+.+..+...+. ..|.. ...-++|..++++-. .+.|+ ..
T Consensus 363 Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~ 439 (564)
T KOG1174|consen 363 LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTP 439 (564)
T ss_pred cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHH
Confidence 46789999999999999999999888777665445666666553 33332 234577899988776 56784 56
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGN 345 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 345 (512)
..+.+...+...|..++++.++++. ...||....+.|...++..+.+++|...|..++.++|.+..+
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 6778889999999999999999887 668999999999999999999999999999999999988643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.6e-09 Score=91.73 Aligned_cols=222 Identities=10% Similarity=0.014 Sum_probs=126.5
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 043142 42 NVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121 (512)
Q Consensus 42 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 121 (512)
+.|.++|.+.|.+.+|.+.|+.-.+. .|-..||..|-++|.+..+++.|+.++.+-++. ++-|+.......+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34556666666666666666666553 334445666666666666666666666665544 233444444455556666
Q ss_pred CChHHHHHHHHhhhhCCC-ChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 043142 122 SCVVNARQVFDKILERDP-SEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFE 200 (512)
Q Consensus 122 g~~~~A~~~~~~m~~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 200 (512)
++.++|.++++...+.+| +......+...|.-.++++.|...|+.+++-|+. +...|+.+.-+|.-.++++-+..-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 666666666666666554 3334555555555566666666666666666643 44555555555555666666665555
Q ss_pred hcC----CCC--chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 043142 201 QLR----EKR--VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESM 267 (512)
Q Consensus 201 ~m~----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 267 (512)
+.. +++ ...|-.+.......|++..|.+.|+-....+..+...++.|.-.-.+.|++++|..+++..
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 432 222 2344445544555555555555555555444444555555555555555666666555555
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.5e-08 Score=98.80 Aligned_cols=341 Identities=12% Similarity=0.050 Sum_probs=209.5
Q ss_pred CCCCCchhHHHHHHHHHHccCChHHHHHHHccCCCC----CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchH
Q 043142 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQR----NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTF 76 (512)
Q Consensus 1 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 76 (512)
+|+.|+-.+|.+||.-|+..|+++.|- +|.-|.-+ +...++.++.+..+.++.+.+. .|-..||
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDty 86 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTY 86 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence 488999999999999999999999998 88887643 5567899999988888887765 5777899
Q ss_pred HHHHHHHhccCChHH---HHHHHHHHH----HhCCC-CChhH-------------HHHHHHHHHhCCChHHHHHHHHhhh
Q 043142 77 PFALKACSALSAIEE---GRRIHEDVI----RNKWE-TDVFV-------------GAALIDMYAKCSCVVNARQVFDKIL 135 (512)
Q Consensus 77 ~~ll~~~~~~~~~~~---a~~~~~~~~----~~g~~-~~~~~-------------~~~li~~~~~~g~~~~A~~~~~~m~ 135 (512)
+.|+.+|...||+.. .++.+..+. ..|.. |.... -.+++....-.|-++.+++++..++
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999998654 333222222 22211 11111 1223444455677777777777775
Q ss_pred hCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc----hHHH
Q 043142 136 ERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV----VSWN 211 (512)
Q Consensus 136 ~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~----~~~~ 211 (512)
...-+. ++..+++-+... ....+++........-.|+..++.++++.-.-.|+++.|..++.+|.+++. .-+-
T Consensus 167 vsa~~~-p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 167 VSAWNA-PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred cccccc-hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 432221 122234444332 233344444333322258999999999999999999999999999998763 2233
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc
Q 043142 212 AMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHS 290 (512)
Q Consensus 212 ~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 290 (512)
.++-+ .+....+..+++-|+..|+ |+..|+..-+-.+...|....+....+.- +|+ +...+..+..+....
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~---hg~--tAavrsaa~rg~~a~ 315 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLA---HGF--TAAVRSAACRGLLAN 315 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchh---hhh--hHHHHHHHhcccHhH
Confidence 34433 7778888899999999999 99999998888887766533332211110 011 122333333331111
Q ss_pred CChHHH--HHHHHhC------CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCCCchHHHHHHHHHhccC
Q 043142 291 GRLDEA--CDLIMQM------RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIE----LEPHDAGNYVILSNIYARAAN 358 (512)
Q Consensus 291 g~~~~A--~~~~~~m------~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~ 358 (512)
.+++.- .-+.... ++.-...+|.. ..-...+|.-++.+++...+.. ..+.+...|..++.-|.+.-+
T Consensus 316 k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e 394 (1088)
T KOG4318|consen 316 KRLRQNLRKSVIGSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIE 394 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHH
Confidence 122111 1111111 22222244433 3333447888888888888764 346677788887777766544
Q ss_pred hhHHHHH
Q 043142 359 WEGVAKL 365 (512)
Q Consensus 359 ~~~a~~~ 365 (512)
---...+
T Consensus 395 ~~~~~~i 401 (1088)
T KOG4318|consen 395 RHICSRI 401 (1088)
T ss_pred hhHHHHH
Confidence 3333333
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.5e-07 Score=90.17 Aligned_cols=286 Identities=13% Similarity=0.106 Sum_probs=199.2
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHh----c--
Q 043142 80 LKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASA----D-- 153 (512)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~----~-- 153 (512)
...+...|++++|++.+..-.+. +.....+.......|.+.|+.++|..+|..+..++|+...|...+..+. .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 34567889999999999775443 3445667778889999999999999999999999999999887777665 2
Q ss_pred cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH-HHHHHHHHhcCCCCch-HHHHHHHHHHHcCChHHHHHHHH
Q 043142 154 IAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLV-KVARNLFEQLREKRVV-SWNAMITGYAMHGHSTKALDLFE 231 (512)
Q Consensus 154 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~m~~~~~~-~~~~li~~~~~~g~~~~A~~~~~ 231 (512)
..+.+...++++.+...- |.......+.-.+..-..+ ..+...+..+..+++. .++.+-..|....+..-..+++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 224666778888776543 2222221121112221222 2344555566677764 45555555665555555555555
Q ss_pred HhHHC----C-----------CCCH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCh
Q 043142 232 KMKDE----V-----------QPDH--ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRL 293 (512)
Q Consensus 232 ~m~~~----~-----------~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 293 (512)
..... + +|.. .++.-+...|...|++++|..+.+..++. .|+ +..|..-...|-+.|++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCH
Confidence 54322 1 1333 34556677788999999999999999843 774 78899999999999999
Q ss_pred HHHHHHHHhCC-CCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCc------hH--HHHHHHHHhccChhHH
Q 043142 294 DEACDLIMQMR-VKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEP-HDAG------NY--VILSNIYARAANWEGV 362 (512)
Q Consensus 294 ~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p-~~~~------~~--~~l~~~~~~~g~~~~a 362 (512)
.+|.+.++... +.+ |...-+-....+.+.|++++|.+.+....+.+. +... .| .-.+.+|.+.|++..|
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999998883 333 444666667778899999999999998876552 1111 22 2467889999999999
Q ss_pred HHHHHHHHh
Q 043142 363 AKLRKLMID 371 (512)
Q Consensus 363 ~~~~~~m~~ 371 (512)
++-|..+.+
T Consensus 325 Lk~~~~v~k 333 (517)
T PF12569_consen 325 LKRFHAVLK 333 (517)
T ss_pred HHHHHHHHH
Confidence 988877654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-07 Score=83.42 Aligned_cols=163 Identities=16% Similarity=0.124 Sum_probs=88.4
Q ss_pred HHccCChHHHHHHHccCCC------CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChH
Q 043142 17 YSACDCLHNAHQLFDRIPQ------RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIE 90 (512)
Q Consensus 17 y~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 90 (512)
+....++..|+.+++--.. .++..| +..++.+.|++++|+..|..+.+.. .|+...+..+.-...-.|.+.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 4445677777777654322 133344 3445667788888888887776643 344444444444444456666
Q ss_pred HHHHHHHHHHH--------------hCC-----------CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHH
Q 043142 91 EGRRIHEDVIR--------------NKW-----------ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLV 145 (512)
Q Consensus 91 ~a~~~~~~~~~--------------~g~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~ 145 (512)
+|.++-....+ .+- .....-.-+|..+..-.-.+++|++++.+....+|+-...+
T Consensus 109 eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN 188 (557)
T KOG3785|consen 109 EAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN 188 (557)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH
Confidence 66554332211 110 00011112233333333457888888888888887777777
Q ss_pred HHHHHH-hccCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 043142 146 TVISAS-ADIAALPQGRELHGFSWRHRFELNVKVKTALV 183 (512)
Q Consensus 146 ~ll~~~-~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 183 (512)
.-+..| .+..-++.+.+++.-.+++ ++.++...|...
T Consensus 189 Vy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLka 226 (557)
T KOG3785|consen 189 VYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKA 226 (557)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHH
Confidence 655555 5566666666666655554 333444444433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-07 Score=78.70 Aligned_cols=195 Identities=14% Similarity=0.086 Sum_probs=97.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHc
Q 043142 144 LVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMH 220 (512)
Q Consensus 144 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~ 220 (512)
...+.-.|.+.|+...|+.-++++++.. +.+..++..+...|.+.|+.+.|.+.|+.... .+-...|....-+|.+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 4444445555555555555555555543 33344555555555555555555555555332 2234444444455555
Q ss_pred CChHHHHHHHHHhHHCCC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHH
Q 043142 221 GHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEAC 297 (512)
Q Consensus 221 g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 297 (512)
|++++|...|++....-. --..||..+.-+..+.|+.+.|..+|++.++. .| .......+.....+.|++..|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHH
Confidence 555555555555544322 22344555555555555555555555555422 33 2344445555555555555555
Q ss_pred HHHHhC--CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 298 DLIMQM--RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 298 ~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
.+++.. +..++..+....|..-...||.+.+.+.-.++....|..
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 555544 223444444444444455555555555555554444443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-06 Score=82.42 Aligned_cols=350 Identities=16% Similarity=0.138 Sum_probs=192.6
Q ss_pred HHHccCChHHHHHHHccC---CCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCChHH
Q 043142 16 LYSACDCLHNAHQLFDRI---PQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN-FTFPFALKACSALSAIEE 91 (512)
Q Consensus 16 ~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~ 91 (512)
.....|+++.|...|-.. .++|-+.|+.-..+|+..|++++|++=-.+-++ +.|+. ..|+-...++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 445689999999999874 345888999999999999999999887776665 56774 479999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHH------hhhhCCC------ChhHHHHHHHHHhcc-----
Q 043142 92 GRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFD------KILERDP------SEATLVTVISASADI----- 154 (512)
Q Consensus 92 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~m~~~~p------d~~t~~~ll~~~~~~----- 154 (512)
|...|..-++.. +.+...++.|.+++.-.. .+.+.|. ... .+| ...+|..++...-+.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~-~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLA-NLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhh-cChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999888775 567778888888772110 0011110 000 000 001111111111000
Q ss_pred --CChHHHHHHHHHHHH--------cC-------CCC----------------------chHHHHHHHHHHHhcCCHHHH
Q 043142 155 --AALPQGRELHGFSWR--------HR-------FEL----------------------NVKVKTALVDMYAKCGLVKVA 195 (512)
Q Consensus 155 --~~~~~a~~~~~~~~~--------~g-------~~~----------------------~~~~~~~li~~y~~~g~~~~A 195 (512)
.+.+...+.+..+.. .| ..| -..-...+.++.-+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 000000000000000 00 000 011233344444445555555
Q ss_pred HHHHHhcCCCC--chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHH-------HHHHHHHHhcCCCHHHHHHHHHH
Q 043142 196 RNLFEQLREKR--VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHIT-------FVGVLSACSRGGLFDEGRMFFES 266 (512)
Q Consensus 196 ~~~~~~m~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t-------~~~ll~a~~~~g~~~~a~~~~~~ 266 (512)
.+-+....+.+ +.-++....+|...|...+....-....+.|--...- +..+..++.+.++++.|+.+|.+
T Consensus 244 ~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 244 IQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 55554433221 2223333344444444443333333332222211111 11122233334445555555544
Q ss_pred HHHhcCCCCChhH-------------------------HHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHH
Q 043142 267 MVRDYHIDPSVQH-------------------------YTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSC 319 (512)
Q Consensus 267 ~~~~~~~~p~~~~-------------------------~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~ 319 (512)
....+ ..|+... .-.=...+.+.|++..|...+.++ ...|+ ...|.....+|
T Consensus 324 aLte~-Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEH-RTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY 402 (539)
T ss_pred Hhhhh-cCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 43331 1222110 011133456677888888877776 33454 44788888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 320 KLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
.+.|.+..|..-.+..++++|+....|.-=..++....+|++|.+.|++-.+.+
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888888888888888888877777777777777788888888887776655
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.9e-06 Score=80.27 Aligned_cols=193 Identities=12% Similarity=0.014 Sum_probs=92.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCH--HHHHHHHHHHhc
Q 043142 181 ALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDH--ITFVGVLSACSR 253 (512)
Q Consensus 181 ~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~--~t~~~ll~a~~~ 253 (512)
.+...+...|++++|...+++..+. +...+..+...|...|++++|...+++.....+ |+. ..+..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3344455555555555555554321 233444455555555555555555555544332 121 123344455555
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCChhHH-H--HHHHHHhccCChHHHHHH---HHhC-CCCCC---HhHHHHHHHHHHHcC
Q 043142 254 GGLFDEGRMFFESMVRDYHIDPSVQHY-T--CMVDLLGHSGRLDEACDL---IMQM-RVKPD---PGVWGALLNSCKLHG 323 (512)
Q Consensus 254 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m-~~~p~---~~~~~~ll~~~~~~g 323 (512)
.|++++|..+++.........+..... + .++..+...|....+.++ .... +..|. .........++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 566666666665553211101111100 0 122222223322222221 1110 00011 112224555566777
Q ss_pred CHHHHHHHHHHHHhcC-C--------CCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 324 HVKLAELALEKLIELE-P--------HDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 324 ~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
+.+.|..+++.+.... . ...........++...|++++|.+.+......+
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7888888877776532 1 123344456667789999999999998877654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-05 Score=77.83 Aligned_cols=358 Identities=14% Similarity=0.183 Sum_probs=216.2
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHccCCC-----CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHH
Q 043142 7 PVLATKLVHLYSACDCLHNAHQLFDRIPQ-----RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALK 81 (512)
Q Consensus 7 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 81 (512)
+-.|-.-+....++|++...++.|++... .....|...+......|-++-++.+|++.++. .|. .-.--+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHH
Confidence 34566666777788888888888877432 13445777776666677777777777776652 232 2444455
Q ss_pred HHhccCChHHHHHHHHHHH----------------------------------------HhCC--CCC--hhHHHHHHHH
Q 043142 82 ACSALSAIEEGRRIHEDVI----------------------------------------RNKW--ETD--VFVGAALIDM 117 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~----------------------------------------~~g~--~~~--~~~~~~li~~ 117 (512)
.++..+++++|.+.+..++ +.|+ -+| ...|++|.+-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 5555666665555443322 1111 112 2457888888
Q ss_pred HHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHH----------------------------------------------
Q 043142 118 YAKCSCVVNARQVFDKILERDPSEATLVTVISAS---------------------------------------------- 151 (512)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~---------------------------------------------- 151 (512)
|.+.|+++.|..+|++....-.+...|..+..+|
T Consensus 258 YIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 8888888888888877654321111111111111
Q ss_pred --------------------hccCChHHHHHHHHHHHHcC-----CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 043142 152 --------------------ADIAALPQGRELHGFSWRHR-----FELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR 206 (512)
Q Consensus 152 --------------------~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 206 (512)
...|+..+-...+.++++.- +..-...|..+...|-..|+++.|+.+|++..+-+
T Consensus 338 NsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 11234445555555555431 11123467788899999999999999999887543
Q ss_pred -------chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC------------C------CHHHHHHHHHHHhcCCCHHHHH
Q 043142 207 -------VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ------------P------DHITFVGVLSACSRGGLFDEGR 261 (512)
Q Consensus 207 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------p------~~~t~~~ll~a~~~~g~~~~a~ 261 (512)
...|..-...=.++.+++.|+.+++....... + +...|...++.--..|-++...
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 24566656666677888888888877542211 1 1122333344444567788888
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-C-C-CCCHh-HHHHHHHHHHH---cCCHHHHHHHHHH
Q 043142 262 MFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-R-V-KPDPG-VWGALLNSCKL---HGHVKLAELALEK 334 (512)
Q Consensus 262 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~-~p~~~-~~~~ll~~~~~---~g~~~~A~~~~~~ 334 (512)
.+|+.++.-.=..|.. .-.....+-...-++++.+++++- + + -|++. .|++.+..+.+ ...++.|..+|++
T Consensus 498 ~vYdriidLriaTPqi--i~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 498 AVYDRIIDLRIATPQI--IINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHHHhcCCHHH--HHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 8888887542233432 222223345566788899998876 2 2 25555 89888877754 3468999999999
Q ss_pred HHhcCCCCCc--hHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 335 LIELEPHDAG--NYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 335 ~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
+++.-|+... .|...+..-.+-|....|..++++..
T Consensus 576 aL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 576 ALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9997775322 33333344455688888888888754
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.3e-08 Score=88.50 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=79.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhc----CCCH
Q 043142 182 LVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSR----GGLF 257 (512)
Q Consensus 182 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~----~g~~ 257 (512)
...+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+.. +..+...+..++.. ...+
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCchhH
Confidence 334555566666666666544 334444455566666666666666666665432 22233333333322 2346
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCH-HHHHHHHHH
Q 043142 258 DEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHV-KLAELALEK 334 (512)
Q Consensus 258 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~-~~A~~~~~~ 334 (512)
.+|.-+|+++.++ ..+++.+.+.+..++...|++++|.+++++. ...|+ ..+...++......|+. +.+.+.+.+
T Consensus 184 ~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 6666666666432 3345555666666666666666666666554 22232 23444555555555555 555566666
Q ss_pred HHhcCCCC
Q 043142 335 LIELEPHD 342 (512)
Q Consensus 335 ~~~~~p~~ 342 (512)
+....|..
T Consensus 262 L~~~~p~h 269 (290)
T PF04733_consen 262 LKQSNPNH 269 (290)
T ss_dssp CHHHTTTS
T ss_pred HHHhCCCC
Confidence 66666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.4e-06 Score=80.10 Aligned_cols=143 Identities=18% Similarity=0.153 Sum_probs=93.6
Q ss_pred hHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHH--------HHHHhcCCCCChhHHHHHHHHHhccCCh
Q 043142 223 STKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFE--------SMVRDYHIDPSVQHYTCMVDLLGHSGRL 293 (512)
Q Consensus 223 ~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~ 293 (512)
+.+|.+++...-+..+ -........+......|+++.|..++. .+. +.+. .+.+...++..|.+.++.
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~-~~~~--~P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL-EAKH--LPGTVGAIVALYYKIKDN 433 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh-hhcc--ChhHHHHHHHHHHhccCC
Confidence 4445555554444333 223444455566677899999999888 443 2233 345566778888888876
Q ss_pred HHHHHHHHhC--------CCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHH
Q 043142 294 DEACDLIMQM--------RVKPDP-GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAK 364 (512)
Q Consensus 294 ~~A~~~~~~m--------~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 364 (512)
+.|..++.+. .-.+.. .+|.-+..--.++|+-++|..+++++.+.+|++..+...++.+|++. +.+.|..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHH
Confidence 6666666544 112211 23444444446789999999999999999999999999999999876 5666666
Q ss_pred HHHHH
Q 043142 365 LRKLM 369 (512)
Q Consensus 365 ~~~~m 369 (512)
+-+.+
T Consensus 513 l~k~L 517 (652)
T KOG2376|consen 513 LSKKL 517 (652)
T ss_pred HhhcC
Confidence 65443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.9e-06 Score=90.34 Aligned_cols=363 Identities=10% Similarity=0.001 Sum_probs=231.1
Q ss_pred HHHHHHHHccCChHHHHHHHccCCCCCchH--HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC
Q 043142 11 TKLVHLYSACDCLHNAHQLFDRIPQRNLFL--WNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSA 88 (512)
Q Consensus 11 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 88 (512)
......|...|++.+|.............. ...........|++..+...++.+.......+..........+...++
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 344555667788888877776665442211 111223445668888777777765322111222233344455667889
Q ss_pred hHHHHHHHHHHHHhCCC------CC--hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh------hHHHHHHHHHhcc
Q 043142 89 IEEGRRIHEDVIRNKWE------TD--VFVGAALIDMYAKCSCVVNARQVFDKILERDPSE------ATLVTVISASADI 154 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~------~t~~~ll~~~~~~ 154 (512)
++++...+....+.--. +. ......+...+...|++++|...+++..+..|.. .+.+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 99999988877553111 11 1122233455678999999999999876533321 2344555566789
Q ss_pred CChHHHHHHHHHHHHc----CC-CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC----chHHHHHHHHHH
Q 043142 155 AALPQGRELHGFSWRH----RF-ELNVKVKTALVDMYAKCGLVKVARNLFEQLRE-------KR----VVSWNAMITGYA 218 (512)
Q Consensus 155 ~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~~----~~~~~~li~~~~ 218 (512)
|+++.|...+...... |. .....+...+...+...|+++.|...+++... ++ ...+..+...+.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 9999999999887653 21 11123456677788899999999998876532 11 123445556677
Q ss_pred HcCChHHHHHHHHHhHHC----CC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHH-----HHHHHHHh
Q 043142 219 MHGHSTKALDLFEKMKDE----VQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHY-----TCMVDLLG 288 (512)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~----~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~ 288 (512)
..|++++|...+.+.... +. .....+..+.......|+.++|...+........-......+ ...+..+.
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 789999999999887543 11 123344556667788999999999988875321111111111 11224456
Q ss_pred ccCChHHHHHHHHhCCCC--CCH----hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCCchHHHHHHHHHhc
Q 043142 289 HSGRLDEACDLIMQMRVK--PDP----GVWGALLNSCKLHGHVKLAELALEKLIELEP------HDAGNYVILSNIYARA 356 (512)
Q Consensus 289 ~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~ 356 (512)
..|+.+.|..++...... ... ..+..+..++...|+.++|...++++..... ....+...+..++.+.
T Consensus 665 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 689999999998776311 111 1244566778889999999999999887521 1234667788899999
Q ss_pred cChhHHHHHHHHHHhCC
Q 043142 357 ANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 357 g~~~~a~~~~~~m~~~g 373 (512)
|+.++|...+.+..+..
T Consensus 745 G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 745 GRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999987654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-05 Score=77.72 Aligned_cols=190 Identities=13% Similarity=0.083 Sum_probs=93.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----Cc--hHHHHHHHHHHH
Q 043142 147 VISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK-----RV--VSWNAMITGYAM 219 (512)
Q Consensus 147 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----~~--~~~~~li~~~~~ 219 (512)
+...+...|++++|.+.++...+.. +.+...+..+...|...|++++|...+++..+. +. ..|..+...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3344455555555555555555543 333445555666666666666666666654431 11 234455566666
Q ss_pred cCChHHHHHHHHHhHHCCC--CCHHHH-H--HHHHHHhcCCCHHHHHHH---HHHHHHh-cCCCCChhHHHHHHHHHhcc
Q 043142 220 HGHSTKALDLFEKMKDEVQ--PDHITF-V--GVLSACSRGGLFDEGRMF---FESMVRD-YHIDPSVQHYTCMVDLLGHS 290 (512)
Q Consensus 220 ~g~~~~A~~~~~~m~~~~~--p~~~t~-~--~ll~a~~~~g~~~~a~~~---~~~~~~~-~~~~p~~~~~~~li~~~~~~ 290 (512)
.|+.++|+.+|++.....+ +..... + .++.-+...|..+.+.+. ....... .+ ..........+.++...
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGA 277 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcC
Confidence 6777777777766543222 111111 1 222223333332222222 1111100 00 01112222455666777
Q ss_pred CChHHHHHHHHhCC--CCC---CH----hHHHHHHH--HHHHcCCHHHHHHHHHHHHhc
Q 043142 291 GRLDEACDLIMQMR--VKP---DP----GVWGALLN--SCKLHGHVKLAELALEKLIEL 338 (512)
Q Consensus 291 g~~~~A~~~~~~m~--~~p---~~----~~~~~ll~--~~~~~g~~~~A~~~~~~~~~~ 338 (512)
|+.++|...++.+. ... .. .+-..++. ++...|+.+.|.+.+..++..
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78888888777661 111 11 11122233 346788999999888888764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-05 Score=77.97 Aligned_cols=174 Identities=16% Similarity=0.209 Sum_probs=117.7
Q ss_pred CChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHC-CCCCCcchHHHHHHHHhccCChHHHHHHHHHH
Q 043142 21 DCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEI-GLVPDNFTFPFALKACSALSAIEEGRRIHEDV 99 (512)
Q Consensus 21 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 99 (512)
..++.++....+|+. .|-.-+..+.++|+.......|++.+.. .+.--...|...+.-....+-++.+..+++..
T Consensus 89 ~c~er~lv~mHkmpR----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRY 164 (835)
T KOG2047|consen 89 NCFERCLVFMHKMPR----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRY 164 (835)
T ss_pred HHHHHHHHHHhcCCH----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHH
Confidence 345667777777764 7888888999999999999999988654 23333457888888888889999999999999
Q ss_pred HHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC-------C-ChhHHHHHHHHHhccCChHH---HHHHHHHHH
Q 043142 100 IRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD-------P-SEATLVTVISASADIAALPQ---GRELHGFSW 168 (512)
Q Consensus 100 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------p-d~~t~~~ll~~~~~~~~~~~---a~~~~~~~~ 168 (512)
++. ++..-+..|..+++.+++++|.+.+......+ + +...|..+-...++..+.-. ...+++.++
T Consensus 165 Lk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 165 LKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI 240 (835)
T ss_pred Hhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence 865 34447788999999999999999998887654 2 22334444444444333222 222233222
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 043142 169 RHRFELNVKVKTALVDMYAKCGLVKVARNLFEQL 202 (512)
Q Consensus 169 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 202 (512)
..=...-...|++|.+-|.+.|.+++|..+|++.
T Consensus 241 ~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeea 274 (835)
T KOG2047|consen 241 RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEA 274 (835)
T ss_pred ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2211112356677777777777777777777653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.1e-08 Score=93.00 Aligned_cols=220 Identities=14% Similarity=0.071 Sum_probs=173.2
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCChHHHHH
Q 043142 152 ADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR---VVSWNAMITGYAMHGHSTKALD 228 (512)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~ 228 (512)
.+.|++.+|.-.|+..++.. |-+...|--|....+..++-..|+..+++..+-| ....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 56788888888888888875 5567888888888888888888998888877644 4666677778888888889999
Q ss_pred HHHHhHHCCCCCHHHHHH-------HHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHH
Q 043142 229 LFEKMKDEVQPDHITFVG-------VLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIM 301 (512)
Q Consensus 229 ~~~~m~~~~~p~~~t~~~-------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (512)
.++.-....+|-...-.. .-..+.....+....++|-.+....+.++|+.++..|.-.|--.|.+++|.+.|+
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 998875543211100000 0012223334556667777776666766788889999999999999999999999
Q ss_pred hC-CCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 302 QM-RVKPDPG-VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 302 ~m-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
.. .++|+.. .||-|...++...+.++|+..|++++++.|.-.++...|.-.|...|.+++|.+.|=.....
T Consensus 455 ~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 455 AALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 88 6778655 99999999999999999999999999999999999999999999999999999998766543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.4e-07 Score=89.17 Aligned_cols=205 Identities=16% Similarity=0.239 Sum_probs=127.8
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHH
Q 043142 151 SADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLF 230 (512)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 230 (512)
......+.+|..+++.+..+.. ....|..+.+-|+..|+++.|+++|-+.. .++--|..|.++|++++|..+-
T Consensus 742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHH
Confidence 3344556666666665554432 22345566677777777777777775542 2344566677777777777765
Q ss_pred HHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCH
Q 043142 231 EKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDP 309 (512)
Q Consensus 231 ~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~ 309 (512)
.+. .++ .....|..-..-.-+.|++.+|+++|-.+. .|+. .|.+|-+.|..++.+++.++..-..-.
T Consensus 815 ~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~ 882 (1636)
T KOG3616|consen 815 EEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLH 882 (1636)
T ss_pred HHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhh
Confidence 443 234 444556555566667777777777765542 3443 467788888888888777776311122
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCceee
Q 043142 310 GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSW 382 (512)
Q Consensus 310 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 382 (512)
.|...+..-+-..|+++.|+.-|-++ .-|..-+++|-..+.|++|.++-+.--..+..+....-|
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 36666777777888888888777665 345567788888889998888766533333334444444
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-06 Score=77.39 Aligned_cols=305 Identities=15% Similarity=0.104 Sum_probs=150.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH-HHHHHH
Q 043142 41 WNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAA-LIDMYA 119 (512)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~~~ 119 (512)
+++.+..+.+..++++|++++..-.+...+ +....+.+..+|....++..|...++++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 344454555566666666666555443211 3344555555555666666666666665544 233222221 123344
Q ss_pred hCCChHHHHHHHHhhhhCCCChhHHHHHHHH--HhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 043142 120 KCSCVVNARQVFDKILERDPSEATLVTVISA--SADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARN 197 (512)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 197 (512)
+.+.+.+|+++...|... |+...-..-+.+ ..+.+++..++.+.++.-..| +..+.+...-...+.|+++.|.+
T Consensus 90 ~A~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HhcccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 556666666666555432 111111111111 123344444444444332211 22222233333344455555555
Q ss_pred HHHhcCCC----CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 043142 198 LFEQLREK----RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHI 273 (512)
Q Consensus 198 ~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 273 (512)
-|+...+- ....||.-+. ..+.|+.+.|+++..++.+.|+-+..-+++ |..-++.. .+.+ |
T Consensus 166 kFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgI--------Gm~tegiD-vrsv----g- 230 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGI--------GMTTEGID-VRSV----G- 230 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCc--------cceeccCc-hhcc----c-
Confidence 55444331 1234443322 223344445555555554444411111110 00000000 0000 0
Q ss_pred CCChhHHHHHH-------HHHhccCChHHHHHHHHhCC----CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 274 DPSVQHYTCMV-------DLLGHSGRLDEACDLIMQMR----VKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 274 ~p~~~~~~~li-------~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
.|-..+-+.++ ..+.+.|+++.|.+-+..|| .+.|++|...+.-. -..+++....+-+.-+++++|-.
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP 309 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFP 309 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCC
Confidence 01112223333 34568899999999999994 34566766554322 23456667777777888889877
Q ss_pred CchHHHHHHHHHhccChhHHHHHHHH
Q 043142 343 AGNYVILSNIYARAANWEGVAKLRKL 368 (512)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (512)
+.+|..++-.|++..-++-|..++-+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 88999999999999999999888754
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.82 E-value=4e-07 Score=84.29 Aligned_cols=215 Identities=13% Similarity=0.067 Sum_probs=141.9
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-c---hHHHH-HHHHHHH
Q 043142 145 VTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR-V---VSWNA-MITGYAM 219 (512)
Q Consensus 145 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-~---~~~~~-li~~~~~ 219 (512)
..+.+++...|..+.+. ..+.+.. .|.......+...+...++-+.+..-+++..... . .++.. ....+..
T Consensus 39 ~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~ 114 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFH 114 (290)
T ss_dssp HHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 34444555555544322 2222222 4555555555544444355566666665443222 1 12222 2234566
Q ss_pred cCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH----HHhccCChHH
Q 043142 220 HGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVD----LLGHSGRLDE 295 (512)
Q Consensus 220 ~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~----~~~~~g~~~~ 295 (512)
.|++++|++++++- .+.......+..+.+.++++.|.+.++.|. .+..|. +...|.. .+.-.+.+.+
T Consensus 115 ~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~-~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 115 EGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDS-ILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp CCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCH-HHHHHHHHHHHHHHTTTCCCH
T ss_pred cCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcH-HHHHHHHHHHHHHhCchhHHH
Confidence 79999999988653 456666778889999999999999999995 345553 3333333 3333457999
Q ss_pred HHHHHHhC--CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccCh-hHHHHHHHHHHhC
Q 043142 296 ACDLIMQM--RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANW-EGVAKLRKLMIDR 372 (512)
Q Consensus 296 A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 372 (512)
|..+|+++ ...+++.+.+.+..++...|++++|+++++++++.+|.++.+...++......|+. +.+.+++..++..
T Consensus 186 A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 186 AFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999 34577788999999999999999999999999999999999999999999999998 6677888887764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-05 Score=77.07 Aligned_cols=181 Identities=14% Similarity=0.082 Sum_probs=81.1
Q ss_pred CChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCChHHHHHHH
Q 043142 21 DCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN-FTFPFALKACSALSAIEEGRRIH 96 (512)
Q Consensus 21 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~ 96 (512)
|+-++|......... ++-+.|..+.-.+-...++++|++.|...... .||. ..+.-+--.-++.++++......
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 444555444444332 23455555555555555566666666555542 2332 23333333334445555544444
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC---CChhHHHHHHH------HHhccCChHHHHHHHHHH
Q 043142 97 EDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD---PSEATLVTVIS------ASADIAALPQGRELHGFS 167 (512)
Q Consensus 97 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---pd~~t~~~ll~------~~~~~~~~~~a~~~~~~~ 167 (512)
.+..+.. +.....|..+.-++.-.|+...|..+.+...+.. |+...+..... .....|.++.|.+.....
T Consensus 133 ~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 133 NQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 4444432 2334445555555555555555555555544322 44433322211 123344444444443332
Q ss_pred HHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 043142 168 WRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK 205 (512)
Q Consensus 168 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~ 205 (512)
... +......-..-.+.+.+.+++++|..++..+..+
T Consensus 212 e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 212 EKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred hhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 221 1111122223344555566666666666655543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.7e-06 Score=73.20 Aligned_cols=191 Identities=14% Similarity=0.117 Sum_probs=108.2
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH---HHHHhccCChHHHHHHHHHHHHhCCCCChhHHH-
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFA---LKACSALSAIEEGRRIHEDVIRNKWETDVFVGA- 112 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~- 112 (512)
++.-.--+...+...|++..|+.-|...++- .|+. |.++ ...|...|.-..|..-+..+++. +||-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~--Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNN--YQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--Cchh--HHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3344445677888889999999999988763 3443 4444 34577778888888888888776 56643221
Q ss_pred HHHHHHHhCCChHHHHHHHHhhhhCCCChhHH----------------HHHHHHHhccCChHHHHHHHHHHHHcCCCCch
Q 043142 113 ALIDMYAKCSCVVNARQVFDKILERDPSEATL----------------VTVISASADIAALPQGRELHGFSWRHRFELNV 176 (512)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~----------------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 176 (512)
--...+.+.|.++.|..-|+.....+|+..+- ...+..+...|+...+......+++.. +.|.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 12345778999999999999998888753221 112223333444445554444444432 3344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCChHHHHHHHHHhH
Q 043142 177 KVKTALVDMYAKCGLVKVARNLFEQLR---EKRVVSWNAMITGYAMHGHSTKALDLFEKMK 234 (512)
Q Consensus 177 ~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 234 (512)
..+..-..+|...|++..|+.-++... ..+....--+-..+...|+.+.++...++-.
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 444444455555555555544333322 2233333333444444454444444444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.7e-09 Score=61.26 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=29.9
Q ss_pred CCCCCchhHHHHHHHHHHccCChHHHHHHHccCC
Q 043142 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIP 34 (512)
Q Consensus 1 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 34 (512)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3888999999999999999999999999998884
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.7e-07 Score=92.74 Aligned_cols=200 Identities=12% Similarity=0.154 Sum_probs=169.4
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHH
Q 043142 173 ELNVKVKTALVDMYAKCGLVKVARNLFEQLREK--------RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITF 244 (512)
Q Consensus 173 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~ 244 (512)
|.+...|-..|......+++++|++++++.... -...|-++++.-...|.-+...++|++..+..- -...|
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~ 1533 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVH 1533 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHH
Confidence 455678888889999999999999999987632 246888888888888888889999999876432 23457
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC---CHhHHHHHHHHHH
Q 043142 245 VGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP---DPGVWGALLNSCK 320 (512)
Q Consensus 245 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~ 320 (512)
..|...|.+.+.+++|.++++.|.++++ -....|...++.+.+..+-+.|..++++. ..-| ......-.+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8899999999999999999999998876 56788999999999999999999999877 2223 3445566666678
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 321 LHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 321 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
++|+.+++..+|+..+...|.....|+..+++-.+.|+.+.++.+|++....++.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999999999999999999999999999999988775
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-06 Score=84.67 Aligned_cols=242 Identities=16% Similarity=0.140 Sum_probs=184.0
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 043142 117 MYAKCSCVVNARQVFDKILERDPS-EATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVA 195 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 195 (512)
-+.+.|++.+|.-.|+.....+|. ...|..|...-+..++-..|...+.+.++.. +.+..+.-+|.-.|...|.-..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 356889999999999999999984 4678888888888888888988888888765 45677788888899999999999
Q ss_pred HHHHHhcCCCC-chHHHHHH---------HHHHHcCChHHHHHHHHHhHHCCC--CCHHHHHHHHHHHhcCCCHHHHHHH
Q 043142 196 RNLFEQLREKR-VVSWNAMI---------TGYAMHGHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLFDEGRMF 263 (512)
Q Consensus 196 ~~~~~~m~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~~g~~~~a~~~ 263 (512)
.+.|+.-.... ...|...- ..+.......+..++|-++....+ +|......|.-.|--.|.+++|...
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99988753211 01110000 112222234456667777655544 7777888888888899999999999
Q ss_pred HHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 043142 264 FESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGALLNSCKLHGHVKLAELALEKLIELEP 340 (512)
Q Consensus 264 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 340 (512)
|+.++ .++| |...||.|.-.++...+.++|+..+++. .++|+-+ ++-.|.-+|...|.+++|.+.|-.++.+.+
T Consensus 453 f~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 453 FEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 99998 4588 7899999999999999999999999988 7889876 888899999999999999999999987653
Q ss_pred C-----C-----CchHHHHHHHHHhccChhHH
Q 043142 341 H-----D-----AGNYVILSNIYARAANWEGV 362 (512)
Q Consensus 341 ~-----~-----~~~~~~l~~~~~~~g~~~~a 362 (512)
. . ...|..|=.++.-.++.|-+
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 3 1 13555555555555555533
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.2e-06 Score=77.88 Aligned_cols=182 Identities=13% Similarity=0.035 Sum_probs=121.9
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---c---hHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCH-HHH
Q 043142 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLREKR---V---VSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDH-ITF 244 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~-~t~ 244 (512)
.....+..+...|.+.|++++|...|+++...+ . .+|..+...|.+.|++++|+..++++.+..+ |.. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345566777777888888888888888765422 1 3566777788888888888888888876655 221 234
Q ss_pred HHHHHHHhcC--------CCHHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHH
Q 043142 245 VGVLSACSRG--------GLFDEGRMFFESMVRDYHIDPSVQ-HYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGAL 315 (512)
Q Consensus 245 ~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 315 (512)
..+..++... |+.++|...|+.+.+. .|+.. .+..+... . ...... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~-~---~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM-D---YLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH-H---HHHHHH-----------HHHHHHH
Confidence 4445555543 6677788888877644 45322 22211111 0 000000 0011245
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 316 LNSCKLHGHVKLAELALEKLIELEPHD---AGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 316 l~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
...+...|++++|...++++++..|++ +..+..++.++.+.|++++|..+++.+....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 566889999999999999999987654 4688899999999999999999999887643
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.3e-08 Score=58.51 Aligned_cols=34 Identities=35% Similarity=0.425 Sum_probs=29.8
Q ss_pred hCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhh
Q 043142 102 NKWETDVFVGAALIDMYAKCSCVVNARQVFDKIL 135 (512)
Q Consensus 102 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 135 (512)
.|++||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778999999999999999999999999998884
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00011 Score=72.15 Aligned_cols=358 Identities=13% Similarity=0.127 Sum_probs=193.9
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHccCCC--C-C----------------------------------chHHHHHHHHH
Q 043142 6 HPVLATKLVHLYSACDCLHNAHQLFDRIPQ--R-N----------------------------------LFLWNVLIRAY 48 (512)
Q Consensus 6 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~----------------------------------~~~~~~li~~~ 48 (512)
+.+.|..+.-.+....++++|++.|..... | | ...|..+..++
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQ 153 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 345667766667777888999888876431 1 2 23455555555
Q ss_pred HhcCCchHHHHHHHHHHHCC-CCCCcchHHHHH------HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 043142 49 AWNGPYEVAIELYYRLLEIG-LVPDNFTFPFAL------KACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121 (512)
Q Consensus 49 ~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll------~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 121 (512)
--.|+...|..+.++..... -.|+...|.-.. ......|.++.|.+.+...... +......-..-.+.+.+.
T Consensus 154 ~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl 232 (700)
T KOG1156|consen 154 HLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKL 232 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHH
Confidence 55666777777766665543 134433332221 2234555556665555433221 111222333445566777
Q ss_pred CChHHHHHHHHhhhhCCCChhHHHHHHHHHh-ccCChHHHH-HHHHHHHHcC---CCCchHHHHHHHHHHHhcCCHHHHH
Q 043142 122 SCVVNARQVFDKILERDPSEATLVTVISASA-DIAALPQGR-ELHGFSWRHR---FELNVKVKTALVDMYAKCGLVKVAR 196 (512)
Q Consensus 122 g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~-~~~~~~~a~-~~~~~~~~~g---~~~~~~~~~~li~~y~~~g~~~~A~ 196 (512)
+++++|..++..+..++||...|.-.+..+. ...+..++. .+|....+.- ..|-... ++..--..-.+...
T Consensus 233 ~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp----lsvl~~eel~~~vd 308 (700)
T KOG1156|consen 233 GQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLP----LSVLNGEELKEIVD 308 (700)
T ss_pred hhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhcc----HHHhCcchhHHHHH
Confidence 7778888888777777777777666555544 233322222 4444443321 1110000 00000011112223
Q ss_pred HHHHhcCCCCc-hHHHHHHHHHHHcCChHH----HHHHHHHhHHC-----------CCCCHH--HHHHHHHHHhcCCCHH
Q 043142 197 NLFEQLREKRV-VSWNAMITGYAMHGHSTK----ALDLFEKMKDE-----------VQPDHI--TFVGVLSACSRGGLFD 258 (512)
Q Consensus 197 ~~~~~m~~~~~-~~~~~li~~~~~~g~~~~----A~~~~~~m~~~-----------~~p~~~--t~~~ll~a~~~~g~~~ 258 (512)
+++..+.++++ ..+..+.+.|-.-...+- +..+...+... .+|.+. |+.-+...+-+.|+++
T Consensus 309 kyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 309 KYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE 388 (700)
T ss_pred HHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence 33333334432 233333333322111111 11111111111 124443 4445667788899999
Q ss_pred HHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043142 259 EGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRLDEACDLIMQMR--VKPDPGVWGALLNSCKLHGHVKLAELALEKL 335 (512)
Q Consensus 259 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 335 (512)
.|..+.+..+ +-.|+ +..|..=..++...|.+++|..++++.. -.||...-.--..-..+.++.++|.++....
T Consensus 389 ~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 389 VALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 9999999887 44775 4567677788899999999999998873 2344444334455566788999999998887
Q ss_pred HhcCCC---C----CchHHHH--HHHHHhccChhHHHHHHHHHHh
Q 043142 336 IELEPH---D----AGNYVIL--SNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 336 ~~~~p~---~----~~~~~~l--~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
.+.+-. + .-.|..+ ..+|.+.|++..|++=|..+..
T Consensus 466 Tr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 466 TREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 765531 1 1123333 4568888888888876666543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.2e-06 Score=73.93 Aligned_cols=154 Identities=9% Similarity=0.131 Sum_probs=107.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 043142 182 LVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGR 261 (512)
Q Consensus 182 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~ 261 (512)
-+..|.+.|+++......+.+..+. ..|...++.++++..+++.....+.|...|..+...+...|++++|.
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3456777888777655544332221 01223556677777788877777778888888888888888888888
Q ss_pred HHHHHHHHhcCCCC-ChhHHHHHHHH-HhccCC--hHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043142 262 MFFESMVRDYHIDP-SVQHYTCMVDL-LGHSGR--LDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKL 335 (512)
Q Consensus 262 ~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 335 (512)
..|++..+ +.| +...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888763 456 66777777775 366666 47888888777 3445 4457777777888888888888888888
Q ss_pred HhcCCCCCchH
Q 043142 336 IELEPHDAGNY 346 (512)
Q Consensus 336 ~~~~p~~~~~~ 346 (512)
++..|++..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 88887765443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.4e-06 Score=87.03 Aligned_cols=355 Identities=14% Similarity=0.054 Sum_probs=209.1
Q ss_pred hHHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCC-CCCcchHHHHHHHH
Q 043142 8 VLATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGL-VPDNFTFPFALKAC 83 (512)
Q Consensus 8 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~ 83 (512)
.+|..|...|....+...|.+.|+..-+ .+..++..+...|++..+++.|..+.-..-+... ..-...|..+.-.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 3788888889888889999999988654 4778899999999999999999998333222110 00112233344456
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHH-HHHHHhccCChHHHHH
Q 043142 84 SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVT-VISASADIAALPQGRE 162 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~-ll~~~~~~~~~~~a~~ 162 (512)
...++...+..-|+...+.. +.|...|..|..+|.++|++..|.++|.+....+|+..--.. ....-+..|.+.++..
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 67788889999999888776 668899999999999999999999999999998886532222 2222367888999888
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHH-------hcCCHHHHHHHHHhcCC-----------CCchHHHHHHHHHH---HcC
Q 043142 163 LHGFSWRHRFELNVKVKTALVDMYA-------KCGLVKVARNLFEQLRE-----------KRVVSWNAMITGYA---MHG 221 (512)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~li~~y~-------~~g~~~~A~~~~~~m~~-----------~~~~~~~~li~~~~---~~g 221 (512)
.++.++... .......+.|...+. -.|-..+|...|++-.+ .+...|-.+-.++. +..
T Consensus 652 ~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 652 ALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 888776531 011111222222222 22333333333333211 12223322222211 100
Q ss_pred --ChH-HHHHHH-HHhHHCCC-C--------------------CHHHHHHHHHHHhc----C----CCHHHHHHHHHHHH
Q 043142 222 --HST-KALDLF-EKMKDEVQ-P--------------------DHITFVGVLSACSR----G----GLFDEGRMFFESMV 268 (512)
Q Consensus 222 --~~~-~A~~~~-~~m~~~~~-p--------------------~~~t~~~ll~a~~~----~----g~~~~a~~~~~~~~ 268 (512)
-+. ..+.+| .+....+. | +..++..|+..+.+ . .+...|...+...+
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV 810 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV 810 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 000 001111 11222222 1 12222222222221 1 11224444444444
Q ss_pred HhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 043142 269 RDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGN 345 (512)
Q Consensus 269 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 345 (512)
+ +.. +..+|+.|.- ....|.+.-|...|-+. -..| ...+|..+...+..+.+++.|...|.+...++|.+...
T Consensus 811 ~---L~ann~~~WnaLGV-lsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~ 886 (1238)
T KOG1127|consen 811 S---LCANNEGLWNALGV-LSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQ 886 (1238)
T ss_pred H---HhhccHHHHHHHHH-hhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHH
Confidence 2 223 3334444433 34445665555555333 1223 44577777777788888999999999999999988888
Q ss_pred HHHHHHHHHhccChhHHHHHHHH
Q 043142 346 YVILSNIYARAANWEGVAKLRKL 368 (512)
Q Consensus 346 ~~~l~~~~~~~g~~~~a~~~~~~ 368 (512)
|......-...|+.-++..+|..
T Consensus 887 WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 887 WLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHh
Confidence 88777777788888888888776
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00011 Score=80.83 Aligned_cols=325 Identities=11% Similarity=-0.012 Sum_probs=211.5
Q ss_pred HHHccCChHHHHHHHccCCC----CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCC--C----CCCcc--hHHHHHHHH
Q 043142 16 LYSACDCLHNAHQLFDRIPQ----RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIG--L----VPDNF--TFPFALKAC 83 (512)
Q Consensus 16 ~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~--t~~~ll~~~ 83 (512)
.....|+++.+..+++.++. .+..........+...|++++|..++......- . .|... ....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456888888888887752 233333344555667899999999998875431 1 11111 111222345
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhCCChHHHHHHHHhhhhCC-----CC--hhHHHHHHHHHh
Q 043142 84 SALSAIEEGRRIHEDVIRNKWETDV----FVGAALIDMYAKCSCVVNARQVFDKILERD-----PS--EATLVTVISASA 152 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----pd--~~t~~~ll~~~~ 152 (512)
...|+++.|...++...+.-...+. ...+.+...+...|++++|...+.+..... +. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999988764212221 344566677888999999999998876431 11 234455666778
Q ss_pred ccCChHHHHHHHHHHHHc----CCC---CchHHHHHHHHHHHhcCCHHHHHHHHHhcCC------CC--chHHHHHHHHH
Q 043142 153 DIAALPQGRELHGFSWRH----RFE---LNVKVKTALVDMYAKCGLVKVARNLFEQLRE------KR--VVSWNAMITGY 217 (512)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~----g~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------~~--~~~~~~li~~~ 217 (512)
..|+++.|...+++.... +.. .....+..+...+...|++++|...+++... +. ...+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998877653 221 1233455666777888999999998887532 11 23455566778
Q ss_pred HHcCChHHHHHHHHHhHHCCC--CCHHHH-----HHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHH
Q 043142 218 AMHGHSTKALDLFEKMKDEVQ--PDHITF-----VGVLSACSRGGLFDEGRMFFESMVRDYHIDPS---VQHYTCMVDLL 287 (512)
Q Consensus 218 ~~~g~~~~A~~~~~~m~~~~~--p~~~t~-----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~ 287 (512)
...|+.++|.+.+.+...... .....+ ...+..+...|+.+.|...+...... ..... ...+..+..++
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHH
Confidence 889999999999988754211 111111 11223445588999999988776421 11111 11134567778
Q ss_pred hccCChHHHHHHHHhC-------CCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 043142 288 GHSGRLDEACDLIMQM-------RVKPDP-GVWGALLNSCKLHGHVKLAELALEKLIELEPH 341 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m-------~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 341 (512)
...|+.++|...+++. +..++. .+...+..++...|+.++|...+.++++....
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 8999999999988776 222222 35666777889999999999999999987643
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.3e-05 Score=76.36 Aligned_cols=285 Identities=13% Similarity=0.086 Sum_probs=190.6
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhh
Q 043142 55 EVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKI 134 (512)
Q Consensus 55 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 134 (512)
.++++.+++..+.+.. |......+---++..++++.|.+...+.++.+-..+...|.-|.-.+...+++.+|+.+.+..
T Consensus 461 ~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 4678888888775422 222222333346778899999999999999876888999999999999999999999999887
Q ss_pred hhCCCChhH-HHHHHHHHhccCChHHHHHHHHHHHH---------------------cCC-------CCchHHHHHHHHH
Q 043142 135 LERDPSEAT-LVTVISASADIAALPQGRELHGFSWR---------------------HRF-------ELNVKVKTALVDM 185 (512)
Q Consensus 135 ~~~~pd~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~---------------------~g~-------~~~~~~~~~li~~ 185 (512)
.+..|+... ...-+..-...++.+++......++. .|+ .....++..+...
T Consensus 540 l~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 540 LEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred HHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 766544211 11111111223333333322222111 111 1112222222221
Q ss_pred HH---hcCCHHHHHHHHHhcCCCC------chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCC
Q 043142 186 YA---KCGLVKVARNLFEQLREKR------VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGL 256 (512)
Q Consensus 186 y~---~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~ 256 (512)
.. +.-..+.....+...+.++ ...|......+...+..++|...+.+.....+-....|......+...|.
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh
Confidence 11 1111111212222222233 13566777788889999999988888877666566667767777888999
Q ss_pred HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHH--HHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHH
Q 043142 257 FDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACD--LIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELA 331 (512)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~ 331 (512)
.++|.+.|.... -+.| ++...+++..++.+.|+..-|.. ++..+ ++.|+ ...|-.|...+.+.|+.+.|-+.
T Consensus 700 ~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 700 LEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred hHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHH
Confidence 999999999876 5788 67788999999999998777777 77777 55664 55999999999999999999999
Q ss_pred HHHHHhcCCCCC
Q 043142 332 LEKLIELEPHDA 343 (512)
Q Consensus 332 ~~~~~~~~p~~~ 343 (512)
|..+.++++.+|
T Consensus 777 f~aa~qLe~S~P 788 (799)
T KOG4162|consen 777 FQAALQLEESNP 788 (799)
T ss_pred HHHHHhhccCCC
Confidence 999999987665
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00031 Score=63.74 Aligned_cols=308 Identities=13% Similarity=0.066 Sum_probs=203.9
Q ss_pred HHHHHHccCChHHHHHHHccCCCCCchHHHHHH---HHHHhcCCchHHHHHHHHHHHCCCCCCcchH-HHHHHHHhccCC
Q 043142 13 LVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLI---RAYAWNGPYEVAIELYYRLLEIGLVPDNFTF-PFALKACSALSA 88 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~ 88 (512)
|...+.-.|.+.+|+.-|....+-|+..|-++- ..|...|+..-|+.=|.+.++ ++||-..- .--...+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhccc
Confidence 344555678899999999888877777777664 578889999999999999887 57774221 112245678999
Q ss_pred hHHHHHHHHHHHHhCCCCC--hh------------HHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhc
Q 043142 89 IEEGRRIHEDVIRNKWETD--VF------------VGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASAD 153 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~--~~------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~ 153 (512)
+++|..-|..+++.....+ .. ..-..+..+...|+...|+.....+.+..|-. ..+..=..+|..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence 9999999999998753111 11 11233445667899999999999999988744 445555667788
Q ss_pred cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHh
Q 043142 154 IAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKM 233 (512)
Q Consensus 154 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 233 (512)
.|.+..|..=+..+-+.. ..+....-.+-..+...|+.+.++...++..+-|...-.+. ..|-+ ..+....++.|
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf-~~YKk---lkKv~K~les~ 276 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF-PFYKK---LKKVVKSLESA 276 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH-HHHHH---HHHHHHHHHHH
Confidence 999999887777766654 33455566677888899999999999888776554211110 00111 11222222222
Q ss_pred HHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC
Q 043142 234 KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS-----VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP 307 (512)
Q Consensus 234 ~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 307 (512)
. .....+.+.++..-.+...+. .|. ...+..+-.++...|++.+|++...+. .+.|
T Consensus 277 e---------------~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~ 338 (504)
T KOG0624|consen 277 E---------------QAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP 338 (504)
T ss_pred H---------------HHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc
Confidence 2 122334455555555555432 332 233445566677777888887777665 4556
Q ss_pred C-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 043142 308 D-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGN 345 (512)
Q Consensus 308 ~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 345 (512)
| +.++.--..+|.....++.|+.-|+++.+.++++..+
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 5 4577777777888888888888888888888877543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00076 Score=65.05 Aligned_cols=158 Identities=11% Similarity=0.127 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 043142 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-P-DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVD 285 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 285 (512)
.+|...+..-.+..-...|..+|.+..+.+. + +....++++.-+| +++.+-|.++|+.-.+++|-. +.-....++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~--p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDS--PEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCC--hHHHHHHHH
Confidence 3455555555556666777777777777666 5 5555555555444 466677777777666554332 333455666
Q ss_pred HHhccCChHHHHHHHHhC---CCCCCH--hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----CchHHHHHHHHHhc
Q 043142 286 LLGHSGRLDEACDLIMQM---RVKPDP--GVWGALLNSCKLHGHVKLAELALEKLIELEPHD----AGNYVILSNIYARA 356 (512)
Q Consensus 286 ~~~~~g~~~~A~~~~~~m---~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~ 356 (512)
.+...++-..|..+|++. .+.|+. ..|..+|.--..-|+...+.++-++....-|.+ ...-..+++.|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 666777777777777766 123332 377777777777777777777777666544411 12334555566555
Q ss_pred cChhHHHHHHHH
Q 043142 357 ANWEGVAKLRKL 368 (512)
Q Consensus 357 g~~~~a~~~~~~ 368 (512)
+.+..-..-++.
T Consensus 524 d~~~c~~~elk~ 535 (656)
T KOG1914|consen 524 DLYPCSLDELKF 535 (656)
T ss_pred ccccccHHHHHh
Confidence 554443333333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.6e-06 Score=73.63 Aligned_cols=147 Identities=12% Similarity=0.190 Sum_probs=116.3
Q ss_pred HHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCC
Q 043142 214 ITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGR 292 (512)
Q Consensus 214 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 292 (512)
+..|...|+++.+....+.+.. |. . .+...++.+++...++..++. .| +...|..|...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~---~~-~-------~~~~~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD---PL-H-------QFASQQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC---cc-c-------cccCchhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCC
Confidence 3568899998886554433221 11 0 222366778888888877644 55 88999999999999999
Q ss_pred hHHHHHHHHhC-CCCCC-HhHHHHHHHHH-HHcCC--HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHH
Q 043142 293 LDEACDLIMQM-RVKPD-PGVWGALLNSC-KLHGH--VKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRK 367 (512)
Q Consensus 293 ~~~A~~~~~~m-~~~p~-~~~~~~ll~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (512)
+++|...+++. ...|+ ...+..+..++ ...|+ .++|.++++++++.+|.++.++..+...+...|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988 45564 45777777764 67777 5999999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 043142 368 LMIDRGI 374 (512)
Q Consensus 368 ~m~~~g~ 374 (512)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9987654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.4e-06 Score=81.90 Aligned_cols=338 Identities=11% Similarity=0.068 Sum_probs=193.2
Q ss_pred chhHHHHHHH--HHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHC-C--------CCCCcc
Q 043142 6 HPVLATKLVH--LYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEI-G--------LVPDNF 74 (512)
Q Consensus 6 ~~~~~~~Li~--~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~~ 74 (512)
|+.+-.++++ .|.--|+++.|.+-.+-+. +-..|..|.+.+.+..+.+-|.-.+-.|... | ..|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4455555554 3677799999987776654 4567999999999998888887777666431 1 1232 2
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhcc
Q 043142 75 TFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADI 154 (512)
Q Consensus 75 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~ 154 (512)
+=..+.-.....|.+++|+.+|.+-.+.. .|=..|-..|.+++|.++-+.-.... -..||..-..-+-..
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiH-Lr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIH-LRNTYYNYAKYLEAR 871 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhcccee-hhhhHHHHHHHHHhh
Confidence 22223333467789999999998876543 34456778899999988765432221 124666666666667
Q ss_pred CChHHHHHHHHHHH----------HcC---------CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHH
Q 043142 155 AALPQGRELHGFSW----------RHR---------FELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMIT 215 (512)
Q Consensus 155 ~~~~~a~~~~~~~~----------~~g---------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 215 (512)
++.+.|.+.|++.. +.. -..|...|.--....-..|+++.|+.+|.... -|-+++.
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~Vr 946 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVR 946 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhhee
Confidence 77777777765321 111 01223333333444445677777777766543 3555666
Q ss_pred HHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CC--CChhHHHHHHHH--Hhcc
Q 043142 216 GYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYH-ID--PSVQHYTCMVDL--LGHS 290 (512)
Q Consensus 216 ~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~--p~~~~~~~li~~--~~~~ 290 (512)
..+-+|+.++|-++-++- -|......|..-|...|++.+|..+|-+...-.+ +. ..-..-..|.+. ..+.
T Consensus 947 I~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGG 1021 (1416)
T ss_pred eEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCc
Confidence 666677777776665543 2455555667777777777777777766531000 00 000000111111 1222
Q ss_pred CChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH----------hcCCC-CCchHHHHHHHHHhccCh
Q 043142 291 GRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLI----------ELEPH-DAGNYVILSNIYARAANW 359 (512)
Q Consensus 291 g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----------~~~p~-~~~~~~~l~~~~~~~g~~ 359 (512)
.+.-.|-.+|++.|...+ ..+..|-+.|.+.+|+++.-+-. .++|. ||....--.+.+....++
T Consensus 1022 ~d~v~aArYyEe~g~~~~-----~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qy 1096 (1416)
T KOG3617|consen 1022 SDLVSAARYYEELGGYAH-----KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQY 1096 (1416)
T ss_pred hhHHHHHHHHHHcchhhh-----HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHH
Confidence 334445556666542211 22334556666666665533221 23443 555555566666777777
Q ss_pred hHHHHHHHHHHh
Q 043142 360 EGVAKLRKLMID 371 (512)
Q Consensus 360 ~~a~~~~~~m~~ 371 (512)
++|..++-..++
T Consensus 1097 ekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1097 EKAVNLLCLARE 1108 (1416)
T ss_pred HHHHHHHHHHHH
Confidence 777777655543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00018 Score=65.46 Aligned_cols=357 Identities=14% Similarity=0.091 Sum_probs=209.5
Q ss_pred HHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCC----------CC-Cc---ch
Q 043142 13 LVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGL----------VP-DN---FT 75 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------~p-~~---~t 75 (512)
+...|-..|++++|..++.-+.+ ++...|-.|.-++.-.|.+.+|..+-....+..+ +. |. .+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 34456678999999999887543 4556676676666667777777766544322100 00 11 11
Q ss_pred H-----------HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH-HHHHHHhCCChHHHHHHHHhhhhCCCChhH
Q 043142 76 F-----------PFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAA-LIDMYAKCSCVVNARQVFDKILERDPSEAT 143 (512)
Q Consensus 76 ~-----------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~pd~~t 143 (512)
| -++.+.....-.+.+|.+++..++... |+-...|. +.-+|.|..-++-+.++++--.+.-||+..
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti 220 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI 220 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence 1 112222222234678888888887653 44444444 334678888899999999888887777543
Q ss_pred -HHHHHHHHhcc--CChHH--HHH----------HHHHHHHcCC------------CCc-----hHHHHHHHHHHHhcCC
Q 043142 144 -LVTVISASADI--AALPQ--GRE----------LHGFSWRHRF------------ELN-----VKVKTALVDMYAKCGL 191 (512)
Q Consensus 144 -~~~ll~~~~~~--~~~~~--a~~----------~~~~~~~~g~------------~~~-----~~~~~~li~~y~~~g~ 191 (512)
.+..+....+. |+..+ -.. .-+.+.+.++ -|. +..--.|+--|.+.++
T Consensus 221 A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~d 300 (557)
T KOG3785|consen 221 AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQND 300 (557)
T ss_pred HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeeccccc
Confidence 33222222221 21111 111 1112222211 011 1223345666889999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcCC-------hHHHHHHHHHhHHCCC-CCH-HHHHHHHHHHhcCCCHHHHHH
Q 043142 192 VKVARNLFEQLREKRVVSWNAMITGYAMHGH-------STKALDLFEKMKDEVQ-PDH-ITFVGVLSACSRGGLFDEGRM 262 (512)
Q Consensus 192 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~-p~~-~t~~~ll~a~~~~g~~~~a~~ 262 (512)
+++|..+..++....+.-|-.-.-.++..|+ ..-|.+.|+-.-..+. -|. .--.++.+++.-..++++.+.
T Consensus 301 VqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~ 380 (557)
T KOG3785|consen 301 VQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLT 380 (557)
T ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 9999999888765444333222222333333 3445555554433333 222 223345556666678899999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHhHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC
Q 043142 263 FFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMR--VKPDPGVWGALL-NSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 263 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll-~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
+++.+ +.+=...|...+ .+..+++..|.+.+|+++|-++. .-.|..+|.+++ ++|...+.++.|-.++ ++.+
T Consensus 381 YlnSi-~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~ 455 (557)
T KOG3785|consen 381 YLNSI-ESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTN 455 (557)
T ss_pred HHHHH-HHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcC
Confidence 99988 454334444444 46889999999999999998873 113566676655 5567888888776554 4444
Q ss_pred -CCCCc-hHHHHHHHHHhccChhHHHHHHHHHHhCCCcc
Q 043142 340 -PHDAG-NYVILSNIYARAANWEGVAKLRKLMIDRGIKK 376 (512)
Q Consensus 340 -p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 376 (512)
|.+.. ....+.+-|.+++.+--|.+.|+.+...+..|
T Consensus 456 t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 456 TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 33332 33456778999999999999999998766544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.7e-05 Score=72.27 Aligned_cols=226 Identities=10% Similarity=0.036 Sum_probs=118.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhH-HHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 043142 110 VGAALIDMYAKCSCVVNARQVFDKILERDPSEAT-LVTVISASADIA-ALPQGRELHGFSWRHRFELNVKVKTALVDMYA 187 (512)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 187 (512)
++..+-..+.+.++.++|+.+.+++.+.+|+..| |+.--.++...+ +++++...++.+++.. +.+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pkny----------- 106 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNY----------- 106 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-Ccch-----------
Confidence 3444444555566667777777777666665433 333323333333 2344444444444432 1222
Q ss_pred hcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCh--HHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 043142 188 KCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHS--TKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFE 265 (512)
Q Consensus 188 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 265 (512)
.+|+.....+.+.|+. ++++.+++++.+..+-|..+|.....++...|+++++++.++
T Consensus 107 --------------------qaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 107 --------------------QIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred --------------------HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344333333333331 344555555555444455555555555555555555555555
Q ss_pred HHHHhcCCCC-ChhHHHHHHHHHhcc---CC----hHHHHHHHHh-CCCCCC-HhHHHHHHHHHHHc----CCHHHHHHH
Q 043142 266 SMVRDYHIDP-SVQHYTCMVDLLGHS---GR----LDEACDLIMQ-MRVKPD-PGVWGALLNSCKLH----GHVKLAELA 331 (512)
Q Consensus 266 ~~~~~~~~~p-~~~~~~~li~~~~~~---g~----~~~A~~~~~~-m~~~p~-~~~~~~ll~~~~~~----g~~~~A~~~ 331 (512)
++++. .| +...|+.....+.+. |. .++++++..+ +...|+ ...|+-+...+... ++..+|...
T Consensus 167 ~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 167 QLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 55532 22 333343333333222 11 2344555533 344443 34777777766653 344567788
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcc------------------ChhHHHHHHHHHH
Q 043142 332 LEKLIELEPHDAGNYVILSNIYARAA------------------NWEGVAKLRKLMI 370 (512)
Q Consensus 332 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 370 (512)
+.++.+.+|.++.+...|++.|.... ..++|.++++.+.
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 88877778888888888888887643 2366888887774
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.1e-06 Score=84.87 Aligned_cols=158 Identities=11% Similarity=0.051 Sum_probs=122.5
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHH
Q 043142 206 RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMV 284 (512)
Q Consensus 206 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 284 (512)
++..+-.|.....+.|+.++|..+++...+..+-+......+...+.+.+++++|....++... ..| +......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHH
Confidence 4667777888888999999999999999887776777788888899999999999999998873 467 567778888
Q ss_pred HHHhccCChHHHHHHHHhCC-CCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHH
Q 043142 285 DLLGHSGRLDEACDLIMQMR-VKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGV 362 (512)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 362 (512)
.++.+.|++++|..+|++.- -.|+ ..+|..+..++...|+.++|...|+++++...+....|+.++ ++...-
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ 235 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNAD 235 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHHH
Confidence 88999999999999999883 3444 458888889999999999999999999987755445544332 333444
Q ss_pred HHHHHHHHhC
Q 043142 363 AKLRKLMIDR 372 (512)
Q Consensus 363 ~~~~~~m~~~ 372 (512)
...++++...
T Consensus 236 ~~~~~~~~~~ 245 (694)
T PRK15179 236 LAALRRLGVE 245 (694)
T ss_pred HHHHHHcCcc
Confidence 4555555433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.9e-05 Score=82.15 Aligned_cols=162 Identities=14% Similarity=0.196 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCC
Q 043142 178 VKTALVDMYAKCGLVKVARNLFEQLREK-R-VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGG 255 (512)
Q Consensus 178 ~~~~li~~y~~~g~~~~A~~~~~~m~~~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g 255 (512)
+|.+++++-..-|.-+...++|++..+. | ...|..|...|.+.++.++|.++|+.|.+.--.....|...+..+.+..
T Consensus 1499 iWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n 1578 (1710)
T KOG1070|consen 1499 IWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQN 1578 (1710)
T ss_pred HHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhccc
Confidence 3444444444444444444555544432 1 1334444445555555555555555554432233444444455555555
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC--CCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 043142 256 LFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM--RVKPDPGVWGALLNSCKLHGHVKLAELALE 333 (512)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 333 (512)
+-+.|..++.+.++...-.-.+....-.+.+-.+.|+.+.+..+|+.. ........|+..+..-.++|+.+.+..+|+
T Consensus 1579 e~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1579 EAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 555555555544422100002333334444444555555555555444 111123355555555555555555555555
Q ss_pred HHHhcC
Q 043142 334 KLIELE 339 (512)
Q Consensus 334 ~~~~~~ 339 (512)
+++.+.
T Consensus 1659 Rvi~l~ 1664 (1710)
T KOG1070|consen 1659 RVIELK 1664 (1710)
T ss_pred HHHhcC
Confidence 555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-05 Score=73.19 Aligned_cols=182 Identities=15% Similarity=0.015 Sum_probs=131.1
Q ss_pred CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc----chHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh-
Q 043142 35 QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN----FTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVF- 109 (512)
Q Consensus 35 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~- 109 (512)
......+..+...+.+.|++++|...|+++... .|+. .++..+..++...|++++|...++.+++... .+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCch
Confidence 346677888888999999999999999998774 3432 3566677888999999999999999988752 2222
Q ss_pred --HHHHHHHHHHhC--------CChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHH
Q 043142 110 --VGAALIDMYAKC--------SCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVK 179 (512)
Q Consensus 110 --~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 179 (512)
++..+...+.+. |+.++|.+.|+++...+|+.......+..... ..... ....
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~---------~~~~~--------~~~~ 169 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY---------LRNRL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH---------HHHHH--------HHHH
Confidence 455556666654 78899999999999988875432211111110 00000 0112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC--C----chHHHHHHHHHHHcCChHHHHHHHHHhHHC
Q 043142 180 TALVDMYAKCGLVKVARNLFEQLREK--R----VVSWNAMITGYAMHGHSTKALDLFEKMKDE 236 (512)
Q Consensus 180 ~~li~~y~~~g~~~~A~~~~~~m~~~--~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 236 (512)
..+...|.+.|++++|...|+...+. + ...|..+..++...|+.++|...++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35667899999999999999987542 1 367889999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.5e-06 Score=81.51 Aligned_cols=130 Identities=11% Similarity=0.062 Sum_probs=75.7
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC-chHHHHHHHHHHHcCChHHHHHHHH
Q 043142 155 AALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR--EKR-VVSWNAMITGYAMHGHSTKALDLFE 231 (512)
Q Consensus 155 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 231 (512)
++++++.+.++.-.+.. +....+|-.+..++.++++++.|.+.|..-. +|| ..+||.+-.+|.+.++-.+|...+.
T Consensus 499 ~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred hhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 44444444444333332 2344566666666777777777777776654 333 4677777777777777777777777
Q ss_pred HhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 043142 232 KMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVD 285 (512)
Q Consensus 232 ~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 285 (512)
+..+.+.-+...+-.-+....+.|.+++|.+.+.++........|..+...++.
T Consensus 578 EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~ 631 (777)
T KOG1128|consen 578 EALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVR 631 (777)
T ss_pred HHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHH
Confidence 776655433333444444556677777777777776543322334444444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.2e-06 Score=82.15 Aligned_cols=220 Identities=12% Similarity=0.087 Sum_probs=165.8
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 043142 105 ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVD 184 (512)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 184 (512)
+|--..--.+...+.+.|-...|..+|++.. .|..++..|...|+..+|..+..+-.+ -+|+...|..+.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 4444555667888999999999999999864 466678888888888888888887777 3788888888888
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 043142 185 MYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFF 264 (512)
Q Consensus 185 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 264 (512)
..-..--+++|.++++....+--.+|+.. ..++++++++.+.|+.-....+--..+|-....+..+.++++.|.+.|
T Consensus 466 v~~d~s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 88777788888888887654422222222 233678888888888877776666677877887888888888888888
Q ss_pred HHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 043142 265 ESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK-PDPGVWGALLNSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 265 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
..-+ ...| +...||.+-.+|.+.|+..+|...+++. +.. -+...|...+-....-|.++.|++++.++..+.
T Consensus 543 ~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 543 HRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 8776 4577 5678888888888888888888888777 222 233467777777778888888888888887653
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00035 Score=71.94 Aligned_cols=140 Identities=15% Similarity=0.283 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 043142 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLL 287 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 287 (512)
..|..+..+-.+.|...+|++-|-+. .|+..|..++..+++.|.+++-.+++....++ .-+|.+ -+.||-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~i--d~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYI--DSELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccc--hHHHHHHH
Confidence 46888888888889988888887654 47788999999999999999999988877544 445554 45788999
Q ss_pred hccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHH
Q 043142 288 GHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRK 367 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (512)
++.+++.+.++++. .||..-...+..-|...|.++.|.-+|... +.|.-|...+...|.+..|...-+
T Consensus 1177 Akt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999887764 477777778888888888888888777654 456666677777777766655443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6e-05 Score=66.93 Aligned_cols=283 Identities=11% Similarity=0.056 Sum_probs=188.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCCC---CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH-HHHHh
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQR---NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFA-LKACS 84 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~ 84 (512)
-+++.+..+.+..++++|++++..-.++ +....+.|.-+|-...++..|-..|+++-. ..|...-|... ...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHH
Confidence 3567777778999999999998775543 566788888899999999999999999876 34554444332 34556
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH--HHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHH
Q 043142 85 ALSAIEEGRRIHEDVIRNKWETDVFVGAALIDM--YAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRE 162 (512)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~ 162 (512)
+.+.+..|..+...|... ++...-..-+.+ ....+++..+..+.++.+..+ +..+.+...-...+.|+++.|.+
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en-~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN-EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC-ccchhccchheeeccccHHHHHH
Confidence 677888888888777532 222211111222 234678888888888886432 23334444444467889999999
Q ss_pred HHHHHHHc-CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----------------c---------------hH
Q 043142 163 LHGFSWRH-RFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR-----------------V---------------VS 209 (512)
Q Consensus 163 ~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-----------------~---------------~~ 209 (512)
-|+...+. |+.| ...||.-+ +..+.|+.+.|.+...++.+++ + ..
T Consensus 166 kFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 166 KFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 99888875 4444 44555443 4556788999988887765432 1 12
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHH
Q 043142 210 WNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDL 286 (512)
Q Consensus 210 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 286 (512)
+|.-...+.+.|+++.|.+.+-.|.-... .|++|.-.+.-.- ..+++..+..-+.-+. ++.| ...++..++-.
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL---~~nPfP~ETFANlLll 319 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLL---QQNPFPPETFANLLLL 319 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHH---hcCCCChHHHHHHHHH
Confidence 33334456678889999888888865443 6778876654322 2344555555555555 4455 56788888888
Q ss_pred HhccCChHHHHHHHHhC
Q 043142 287 LGHSGRLDEACDLIMQM 303 (512)
Q Consensus 287 ~~~~g~~~~A~~~~~~m 303 (512)
|++..-++-|-+++.+-
T Consensus 320 yCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAEN 336 (459)
T ss_pred HhhhHHHhHHHHHHhhC
Confidence 99999899888888764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.5e-05 Score=70.25 Aligned_cols=209 Identities=11% Similarity=-0.024 Sum_probs=119.2
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC-ChHHHHHHHHhhhhCCCChh-HHHHHHHHHh
Q 043142 75 TFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCS-CVVNARQVFDKILERDPSEA-TLVTVISASA 152 (512)
Q Consensus 75 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~pd~~-t~~~ll~~~~ 152 (512)
++..+-..+...+..++|..+..++++.. +-+..+|+..-..+.+.| ++++++..++++.+.+|+.. +|+.-...+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 34445556677889999999999999875 445667877777777888 68999999999999888653 4554443444
Q ss_pred ccCCh--HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHc---CCh-
Q 043142 153 DIAAL--PQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMH---GHS- 223 (512)
Q Consensus 153 ~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~---g~~- 223 (512)
+.+.. +....+.+.+++.. +-+..+|+-..-++.+.|++++|.+.++++.+. +..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 44432 44555555555543 334555655555555666666666666665542 334555544443332 111
Q ss_pred ---HHHHHHHHHhHHCCCCCHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 043142 224 ---TKALDLFEKMKDEVQPDHITFVGVLSACSRG----GLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLG 288 (512)
Q Consensus 224 ---~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~----g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 288 (512)
+++++...++....+-|...|+-+...+... +...+|..++....+ ..| +......|++.|+
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~---~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS---KDSNHVFALSDLLDLLC 266 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc---ccCCcHHHHHHHHHHHH
Confidence 2444444455444444444444444444431 223334444444432 122 3344444455444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.5e-06 Score=69.02 Aligned_cols=107 Identities=17% Similarity=0.072 Sum_probs=71.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 043142 244 FVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCK 320 (512)
Q Consensus 244 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 320 (512)
+.....++...|++++|...|+..+ .+.| +...+..+..++.+.|++++|...|++. ...| +...|..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3345556667777777777777765 2345 5666667777777777777777777666 3334 3446677777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 043142 321 LHGHVKLAELALEKLIELEPHDAGNYVILSNIY 353 (512)
Q Consensus 321 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 353 (512)
..|++++|...|+++++..|+++..+.....+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 777777777777777777777776665555444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00032 Score=70.70 Aligned_cols=322 Identities=13% Similarity=0.078 Sum_probs=200.4
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHccCCC-C----------Cc-hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc
Q 043142 6 HPVLATKLVHLYSACDCLHNAHQLFDRIPQ-R----------NL-FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN 73 (512)
Q Consensus 6 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~----------~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 73 (512)
+-.+|..+..|+.+..+++-|.-.+..|.. + |. ..-....-.-.+.|..++|+.+|++.++
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR------- 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR------- 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-------
Confidence 456899999999999999998888877753 1 11 1111222233567999999999999876
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhh----------CC-----
Q 043142 74 FTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILE----------RD----- 138 (512)
Q Consensus 74 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~----- 138 (512)
|..+=+.|...|.+++|.++-+.--+..+ ..+|.....-+-..++++.|++.|++... .+
T Consensus 829 --~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 829 --YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred --HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 34444567778999999988664332222 23444455555566778888887765321 11
Q ss_pred ------CChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHH
Q 043142 139 ------PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNA 212 (512)
Q Consensus 139 ------pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~ 212 (512)
.|...|.....-.-..|+.+.|..+|..+.. |-+++...+-.|+.++|-++-++- .|....-.
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYh 972 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYH 972 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHH
Confidence 3444555566666778888888888876653 456777777889999998887654 34444555
Q ss_pred HHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhc---------------CCCHHHHHHHHHHHHHhcCCCCCh
Q 043142 213 MITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSR---------------GGLFDEGRMFFESMVRDYHIDPSV 277 (512)
Q Consensus 213 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~---------------~g~~~~a~~~~~~~~~~~~~~p~~ 277 (512)
+...|-..|+..+|..+|.+.+ +|...|..|-. ..+.-.|-.+|++. |..
T Consensus 973 laR~YEn~g~v~~Av~FfTrAq--------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~--- 1037 (1416)
T KOG3617|consen 973 LARMYENDGDVVKAVKFFTRAQ--------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY--- 1037 (1416)
T ss_pred HHHHhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh---
Confidence 7788888999999999888764 23333333322 22333344444433 221
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-----------CC--CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Q 043142 278 QHYTCMVDLLGHSGRLDEACDLIMQM-----------RV--KPDPGVWGALLNSCKLHGHVKLAELALEKLIEL------ 338 (512)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m-----------~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------ 338 (512)
....+..|-++|.+.+|+++-=+- .+ ..|+...+.-..-+..+.++++|..++-.+.+.
T Consensus 1038 --~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~Alql 1115 (1416)
T KOG3617|consen 1038 --AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQL 1115 (1416)
T ss_pred --hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122455688888888887753221 11 223334444444456667777776665443221
Q ss_pred ----------------C------CCC---CchHHHHHHHHHhccChhHHHHHHH
Q 043142 339 ----------------E------PHD---AGNYVILSNIYARAANWEGVAKLRK 367 (512)
Q Consensus 339 ----------------~------p~~---~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (512)
- |+. ......+.+.|.++|.+..|-+-|.
T Consensus 1116 C~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1116 CKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 0 111 2356678888999998887766554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00019 Score=69.05 Aligned_cols=323 Identities=14% Similarity=0.081 Sum_probs=208.2
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCCh
Q 043142 46 RAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETD-VFVGAALIDMYAKCSCV 124 (512)
Q Consensus 46 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 124 (512)
.+....|+++.|+.+|.+.+.... +|.+.|+.-..+++..|++++|.+=-.+.++. .|+ ...|+-+..++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 355678999999999999987643 37778999999999999999998877766665 455 45788888888999999
Q ss_pred HHHHHHHHhhhhCCCChh-HHHHHHHHHhcc---CChHHHHHHHHHHHHcC---CCCchHHHHHHHHH----------HH
Q 043142 125 VNARQVFDKILERDPSEA-TLVTVISASADI---AALPQGRELHGFSWRHR---FELNVKVKTALVDM----------YA 187 (512)
Q Consensus 125 ~~A~~~~~~m~~~~pd~~-t~~~ll~~~~~~---~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~----------y~ 187 (512)
++|+..|.+-.+.+|+.. .++.+..+.... ++.-..-.++..+.... .......|..++.. |.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 999999999999998654 455666665111 00000011111111000 00001112222222 22
Q ss_pred hcCCHHHHHHHHHhcC----------------CC------------C----------chHHHHHHHHHHHcCChHHHHHH
Q 043142 188 KCGLVKVARNLFEQLR----------------EK------------R----------VVSWNAMITGYAMHGHSTKALDL 229 (512)
Q Consensus 188 ~~g~~~~A~~~~~~m~----------------~~------------~----------~~~~~~li~~~~~~g~~~~A~~~ 229 (512)
.-.++..|.-++.... .| | ..-...+.++..+..+++.|++.
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 2122333333332111 11 0 01355677888888889999999
Q ss_pred HHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC--C----hhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 230 FEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP--S----VQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 230 ~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~----~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
+....... .+..-++....++...|.+.+....-...++. |..- + ......+..+|.+.++++.|+.++++.
T Consensus 247 y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~-gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 247 YAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEV-GRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH-hHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 98887665 45555566666777777776666555554433 2111 1 112223444677778888898888775
Q ss_pred ---CCCCCHhHH-------------------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 043142 304 ---RVKPDPGVW-------------------------GALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYAR 355 (512)
Q Consensus 304 ---~~~p~~~~~-------------------------~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 355 (512)
...|+..+- ..=...+.+.|++..|...|.++++.+|+|+..|....-+|.+
T Consensus 325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLK 404 (539)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 112222211 1113446788999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHhCC
Q 043142 356 AANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 356 ~g~~~~a~~~~~~m~~~g 373 (512)
.|.+..|++=.+...+.+
T Consensus 405 L~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 405 LGEYPEALKDAKKCIELD 422 (539)
T ss_pred HhhHHHHHHHHHHHHhcC
Confidence 999999998777766653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00043 Score=67.38 Aligned_cols=335 Identities=12% Similarity=0.100 Sum_probs=195.4
Q ss_pred HHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH--hccC
Q 043142 13 LVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKAC--SALS 87 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~ 87 (512)
=++.+.+.|++++|.+..+++.. .+...+.+=+-++.+.+.+++|+.+.+.-... ..+.+-+ +=.+| .+.+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yrln 93 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYRLN 93 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHHcc
Confidence 35778889999999998888653 35667777777889999999999665542210 1111111 23444 4788
Q ss_pred ChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh---hHHHHHHHHHhccCChHHHHHH
Q 043142 88 AIEEGRRIHEDVIRNKWETD-VFVGAALIDMYAKCSCVVNARQVFDKILERDPSE---ATLVTVISASADIAALPQGREL 163 (512)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~---~t~~~ll~~~~~~~~~~~a~~~ 163 (512)
..++|...+. |..++ ..+...-...+.+.|++++|.++|+.+.+.+.+. .--..++.+-... ..
T Consensus 94 k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~ 161 (652)
T KOG2376|consen 94 KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV 161 (652)
T ss_pred cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH
Confidence 9999998887 33333 3355555667889999999999999997765322 1222222221111 11
Q ss_pred HHHHHHcCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHhc--------CCCC-----c-----hHHHHHHHHHHHcCCh
Q 043142 164 HGFSWRHRFELN--VKVKTALVDMYAKCGLVKVARNLFEQL--------REKR-----V-----VSWNAMITGYAMHGHS 223 (512)
Q Consensus 164 ~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m--------~~~~-----~-----~~~~~li~~~~~~g~~ 223 (512)
..+......|+ -..+-.....+...|++.+|+++++.. .+.| + ..---|.-++...|+-
T Consensus 162 -~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 -QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred -HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 01222222221 222223345677899999999999887 2211 1 1122344567788999
Q ss_pred HHHHHHHHHhHHCCCCCHHHHHHH---HHHHhcCCCHHH--HHHHHHHHHHhc----------CCCCChhHHHHHHHHHh
Q 043142 224 TKALDLFEKMKDEVQPDHITFVGV---LSACSRGGLFDE--GRMFFESMVRDY----------HIDPSVQHYTCMVDLLG 288 (512)
Q Consensus 224 ~~A~~~~~~m~~~~~p~~~t~~~l---l~a~~~~g~~~~--a~~~~~~~~~~~----------~~~p~~~~~~~li~~~~ 288 (512)
++|..++.......++|....... +-+...-.++-. ++..++...... .-.-....-++++.+|
T Consensus 241 ~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~- 319 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF- 319 (652)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999998887666332222 112222222111 122222111000 0000111223344444
Q ss_pred ccCChHHHHHHHHhCC-CCCCHhHHHHHHHHH-HHc-CCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhccChhHHHH
Q 043142 289 HSGRLDEACDLIMQMR-VKPDPGVWGALLNSC-KLH-GHVKLAELALEKLIELEPHD-AGNYVILSNIYARAANWEGVAK 364 (512)
Q Consensus 289 ~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~-~~~-g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~ 364 (512)
.+..+.+.++-...+ ..|.. .+..++..+ ... .....|.+++....+..|.+ ......++......|+++.|.+
T Consensus 320 -tnk~~q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 320 -TNKMDQVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred -hhhHHHHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 355677777777774 33443 444444443 222 24777888888888888876 3344566777889999999999
Q ss_pred HHH
Q 043142 365 LRK 367 (512)
Q Consensus 365 ~~~ 367 (512)
++.
T Consensus 398 il~ 400 (652)
T KOG2376|consen 398 ILS 400 (652)
T ss_pred HHH
Confidence 999
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.7e-05 Score=79.75 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=38.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 043142 309 PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYA 354 (512)
Q Consensus 309 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 354 (512)
+.++-.+-..|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 4466667778888999999999999999999998777777777775
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00051 Score=68.40 Aligned_cols=264 Identities=15% Similarity=0.123 Sum_probs=152.6
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHH
Q 043142 80 LKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQ 159 (512)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~ 159 (512)
+.+......+.+|..+++.+.... .-...|..+.+-|+..|+++.|.++|-+. ..+...|..|.+.|+++.
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~-------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA-------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc-------chhHHHHHHHhccccHHH
Confidence 444455566666666666555442 22334555666677777777777776553 224455666666666666
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCC
Q 043142 160 GRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQP 239 (512)
Q Consensus 160 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 239 (512)
|.++-.+. .|.......|-+-..-.-+.|++.+|+++|-.+.+|+. -|..|-++|..++.+++..+-... -
T Consensus 810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d--~ 880 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD--H 880 (1636)
T ss_pred HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh--h
Confidence 65554332 23334445555555556666777777777666666553 245566677777666666543211 1
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCC---CCC-HhHHHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRV---KPD-PGVWGAL 315 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~p~-~~~~~~l 315 (512)
-..|-..+..-+...|++..|+..|-+.. -|.+-+++|-..+.+++|.++-+.-+- ... ...|.--
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaks 950 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKS 950 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHh
Confidence 22345556667777888888887776552 255677888888999998888765431 111 1133221
Q ss_pred ------HHHHHHcCCHHHH-------------HHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 316 ------LNSCKLHGHVKLA-------------ELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 316 ------l~~~~~~g~~~~A-------------~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
+..+.++|-++.| ..+.+-..+.. -+....-+...+...|++++|.+.+-+..+.+
T Consensus 951 iggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 951 IGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--CccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 2223344444444 33333333222 23455566677788999999988776665543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.3e-06 Score=67.77 Aligned_cols=114 Identities=9% Similarity=-0.111 Sum_probs=82.3
Q ss_pred HHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCh
Q 043142 29 LFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDV 108 (512)
Q Consensus 29 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 108 (512)
+|++..+.++..+..+...+.+.|++++|...|+...... +.+...+..+..++...|++++|...|+..++.. +.+.
T Consensus 15 ~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~ 92 (144)
T PRK15359 15 ILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHP 92 (144)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCc
Confidence 4555444444456666777778888888888888877643 2244567777777888888888888888888765 5577
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHH
Q 043142 109 FVGAALIDMYAKCSCVVNARQVFDKILERDPSEATL 144 (512)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~ 144 (512)
..+..+..++.+.|+.++|+..|+...+..|+...+
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 777788888888888888888888888777765443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00014 Score=74.70 Aligned_cols=324 Identities=16% Similarity=0.122 Sum_probs=191.8
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHH--HHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALK--ACSALSAIEEGRRIHEDVIRNKWETDVFVGAAL 114 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 114 (512)
|...|..+..+|.+.|++..|+++|.+... +.|+. +|...-. .-+..|.+.++...++.++... .......+.|
T Consensus 595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gL 670 (1238)
T KOG1127|consen 595 DYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGL 670 (1238)
T ss_pred hHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhH
Confidence 677888888999999999999999888765 44543 3333222 2356688888888888776542 1111122222
Q ss_pred HHHH-------HhCCChHHHHHHHHhhhhC-------C----------------------CChhH--HHHHHHH-HhccC
Q 043142 115 IDMY-------AKCSCVVNARQVFDKILER-------D----------------------PSEAT--LVTVISA-SADIA 155 (512)
Q Consensus 115 i~~~-------~~~g~~~~A~~~~~~m~~~-------~----------------------pd~~t--~~~ll~~-~~~~~ 155 (512)
...+ .-.|-...|...|+...+. . |+.+. +..++.. .-..+
T Consensus 671 aE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~ 750 (1238)
T KOG1127|consen 671 AESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTG 750 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 2222 2223333333333332221 1 22111 1111111 11122
Q ss_pred Ch---H---HHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cC----CHHHHHHHHHhcC---CCCchHHHHHHHHHH
Q 043142 156 AL---P---QGRELHGFSWRHRFELNVKVKTALVDMYAK----CG----LVKVARNLFEQLR---EKRVVSWNAMITGYA 218 (512)
Q Consensus 156 ~~---~---~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g----~~~~A~~~~~~m~---~~~~~~~~~li~~~~ 218 (512)
.. + .|.+.+-.-++ +..+...|..|+.-|.+ +| +...|...+.... ..+-..||+|.-. .
T Consensus 751 ~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-s 827 (1238)
T KOG1127|consen 751 ALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-S 827 (1238)
T ss_pred cCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-h
Confidence 21 1 11111111111 11223334444433333 22 2345666666544 3456788877655 5
Q ss_pred HcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHH
Q 043142 219 MHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEAC 297 (512)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 297 (512)
..|.+.-|..-|-+-....+.+..+|..+.-.|.+..+++.|...|.... .+.| +...|-.........|+.-++.
T Consensus 828 g~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~ 904 (1238)
T KOG1127|consen 828 GIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERL 904 (1238)
T ss_pred ccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHH
Confidence 56777777777777776666777888888888889999999999999885 5677 6677766666667788888888
Q ss_pred HHHHhC-------CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH----------HHhcCCCCCchHHHHHHHHHhccChh
Q 043142 298 DLIMQM-------RVKPDPGVWGALLNSCKLHGHVKLAELALEK----------LIELEPHDAGNYVILSNIYARAANWE 360 (512)
Q Consensus 298 ~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~----------~~~~~p~~~~~~~~l~~~~~~~g~~~ 360 (512)
.+|..- +--|+...|-....-...+|+.++-+...++ .....|+...+|...+....+.+.++
T Consensus 905 ~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~ 984 (1238)
T KOG1127|consen 905 ILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYR 984 (1238)
T ss_pred HHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHH
Confidence 888652 2346666666666666777777665554444 34456888889998888888888888
Q ss_pred HHHHHHHHHH
Q 043142 361 GVAKLRKLMI 370 (512)
Q Consensus 361 ~a~~~~~~m~ 370 (512)
+|.....+..
T Consensus 985 ~a~ela~Rli 994 (1238)
T KOG1127|consen 985 AALELATRLI 994 (1238)
T ss_pred HHHHHHHHHH
Confidence 8887776643
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00018 Score=68.58 Aligned_cols=209 Identities=15% Similarity=0.095 Sum_probs=138.7
Q ss_pred ChHHHHHHHccCCC------CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHH
Q 043142 22 CLHNAHQLFDRIPQ------RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRI 95 (512)
Q Consensus 22 ~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 95 (512)
++.+++..-+.++. ++...+...+.+......-..+..++. +... ..-..--|...+ .....++++.|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHH-HHHHhcccchHHHH
Confidence 34455555555553 244455555554443333223332222 2221 011112243333 34466889999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 043142 96 HEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRHRFEL 174 (512)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 174 (512)
+..+++.- +.|+..+....+.+.+.++..+|.+.|+++...+|+. .....+..++.+.|++.+|..++....... +.
T Consensus 329 l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~ 406 (484)
T COG4783 329 LQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PE 406 (484)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CC
Confidence 99888764 5567777777889999999999999999999998874 455677788888888888888888777664 66
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC---CCHHHHHHHHH
Q 043142 175 NVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ---PDHITFVGVLS 249 (512)
Q Consensus 175 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---p~~~t~~~ll~ 249 (512)
|+..|..|..+|...|+..+|....- .+|...|++++|...+....+... |+..-+...+.
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~A--------------E~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~ 470 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARA--------------EGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARID 470 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHH--------------HHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 77888888899998888888876543 457788888888888888776643 44443444443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0011 Score=68.38 Aligned_cols=251 Identities=12% Similarity=0.113 Sum_probs=131.9
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcch----HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFT----FPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGA 112 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 112 (512)
|+..-+.-..++...+-+.+-++++++..-. |+.++ ...++-.-+-.-+...+.+..+++-... .|+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~---~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a~~----- 1053 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD-APD----- 1053 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC---CcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC-chh-----
Confidence 5555666778888888888999998887643 23222 2222222223334445555555544332 122
Q ss_pred HHHHHHHhCCChHHHHHHHHhhhhCC-----------------------CChhHHHHHHHHHhccCChHHHHHHHHHHHH
Q 043142 113 ALIDMYAKCSCVVNARQVFDKILERD-----------------------PSEATLVTVISASADIAALPQGRELHGFSWR 169 (512)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~~-----------------------pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 169 (512)
+.......+-+++|..+|++..-.. -.+..|+.+..+-.+.|...+|.+-|-+.
T Consensus 1054 -ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1054 -IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred -HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 2222333444555555555432110 22345556666655555555555444221
Q ss_pred cCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHH
Q 043142 170 HRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK--RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGV 247 (512)
Q Consensus 170 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~l 247 (512)
.|+..|...++...+.|.+++-.+.+....++ ....=..+|-+|++.++..+..+++. -||......+
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~------gpN~A~i~~v 1200 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIA------GPNVANIQQV 1200 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhc------CCCchhHHHH
Confidence 24455666666666666666666655443321 12223456666666666555443321 1566666666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHc
Q 043142 248 LSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLH 322 (512)
Q Consensus 248 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 322 (512)
..-|...+.++.|.-+|..+ ..|..|...+...|.+..|.+.-++.. +..||..+-.+|...
T Consensus 1201 Gdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~aRKAn---s~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDAARKAN---STKTWKEVCFACVDK 1262 (1666)
T ss_pred hHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhhhcc---chhHHHHHHHHHhch
Confidence 66666666666666665544 235556666666666666665555432 344555544444433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.7e-05 Score=76.02 Aligned_cols=129 Identities=12% Similarity=0.092 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCC
Q 043142 177 KVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGL 256 (512)
Q Consensus 177 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~ 256 (512)
....+|+..+...++++.|..+|+++.+.+...+..++..+...++..+|++++++.....+.+...+..-...|.+.++
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34456667777788999999999999888877777788888888888999999999987766677777777777889999
Q ss_pred HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhCCCCCC
Q 043142 257 FDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPD 308 (512)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 308 (512)
.+.|..+.+++. ...| +-.+|..|..+|.+.|++++|+..++.+|+.|.
T Consensus 250 ~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 250 YELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred HHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 999999999987 4577 556999999999999999999999999875543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.9e-05 Score=65.31 Aligned_cols=151 Identities=19% Similarity=0.186 Sum_probs=76.3
Q ss_pred HHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCh
Q 043142 214 ITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRL 293 (512)
Q Consensus 214 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 293 (512)
-..+...|+.+....+..+.....+.|.......+....+.|++.+|...+++... .-.+|...|+.+.-+|.+.|+.
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccCh
Confidence 34444445555544444443322223333333445555555555555555555531 1223555555555555555555
Q ss_pred HHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHH
Q 043142 294 DEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 294 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (512)
++|..-|.+. .+.|+ ....+.|...+.-.|+.+.|..++.......+.+...-..|..+....|++++|.++.
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555555444 22222 2345555555555566666666655555555555555555555555566665555543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.1e-06 Score=52.71 Aligned_cols=35 Identities=37% Similarity=0.569 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN 73 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 73 (512)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00014 Score=75.56 Aligned_cols=130 Identities=10% Similarity=0.024 Sum_probs=82.7
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhH-HHHHHHH
Q 043142 72 DNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEAT-LVTVISA 150 (512)
Q Consensus 72 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t-~~~ll~~ 150 (512)
+...+..|..+..+.|.+++|+.+++.+.+.. +.+......+...+.+.+++++|...+++....+|+..+ ...+..+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 45556666666666777777777777666653 334455556666667777777777777777776666554 3344445
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043142 151 SADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR 203 (512)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 203 (512)
+.+.|++++|..+|+++...+ +.+..++..+...+-+.|+.++|...|+...
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566677777777777776632 3345666666666777777777777776654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0057 Score=59.26 Aligned_cols=367 Identities=9% Similarity=0.071 Sum_probs=183.2
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHccCCC--C-CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHH
Q 043142 4 GFHPVLATKLVHLYSACDCLHNAHQLFDRIPQ--R-NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFAL 80 (512)
Q Consensus 4 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 80 (512)
+.|+.+|+.||.-+... .+++++..++++.. | ....|..-|..-.+..+++....+|.+.+..-+. ...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHHH
Confidence 45778888888888766 88888888888764 3 5667888888888888898888898888765333 33444444
Q ss_pred HHHhcc-CChH----HHHHHHHHHH-HhCCCC-ChhHHHHHHHHH---------HhCCChHHHHHHHHhhhhCC------
Q 043142 81 KACSAL-SAIE----EGRRIHEDVI-RNKWET-DVFVGAALIDMY---------AKCSCVVNARQVFDKILERD------ 138 (512)
Q Consensus 81 ~~~~~~-~~~~----~a~~~~~~~~-~~g~~~-~~~~~~~li~~~---------~~~g~~~~A~~~~~~m~~~~------ 138 (512)
.--.+. +... ...+.|+..+ +.|+.+ .-..|+..++.. ....+++..+++++++....
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 432221 2222 2233444333 345433 334566665543 33456677788888877653
Q ss_pred --CChhHHHHHHHHHh-------ccCChHHHHHHHHHHHH--cCCCCchHH---------------HHHHHHHHHhcC--
Q 043142 139 --PSEATLVTVISASA-------DIAALPQGRELHGFSWR--HRFELNVKV---------------KTALVDMYAKCG-- 190 (512)
Q Consensus 139 --pd~~t~~~ll~~~~-------~~~~~~~a~~~~~~~~~--~g~~~~~~~---------------~~~li~~y~~~g-- 190 (512)
-|-.+|-.-++... +...+-.|+++++++.. .|+..+..+ |-.+|.-=-..+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 12223322222221 23345566666666543 232111111 211221100000
Q ss_pred ----CHH--HHHHHHHhcC---CCCchHHH---HHH----HHHHHcCC-------hHHHHHHHHHhHHCCC-CCHHHHHH
Q 043142 191 ----LVK--VARNLFEQLR---EKRVVSWN---AMI----TGYAMHGH-------STKALDLFEKMKDEVQ-PDHITFVG 246 (512)
Q Consensus 191 ----~~~--~A~~~~~~m~---~~~~~~~~---~li----~~~~~~g~-------~~~A~~~~~~m~~~~~-p~~~t~~~ 246 (512)
..- ...-++++.. ---...|- ..+ ..+...|+ -+++..+++.....-. -+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000000000 00000010 000 11111222 2344444444333222 23333332
Q ss_pred HHHHHh---cCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC---CCC-CHhHHHHHHHHH
Q 043142 247 VLSACS---RGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMR---VKP-DPGVWGALLNSC 319 (512)
Q Consensus 247 ll~a~~---~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p-~~~~~~~ll~~~ 319 (512)
+.+.-- .-...+....+++++.....++|+. +|..++..-.|..-+..|..+|.+.+ ..+ ++.+.++++.-+
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 222111 1112444445555555444445543 56666666666666777777776662 223 444556665554
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 320 KLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
+ .+|.+-|.++|+--++..++++..-...++.+...++-..++.+|++....++.
T Consensus 413 c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred h-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 4 355667777777776666666655555666666777777777777777666443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00052 Score=72.18 Aligned_cols=237 Identities=12% Similarity=0.072 Sum_probs=148.8
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH-HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 043142 36 RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFA-LKACSALSAIEEGRRIHEDVIRNKWETDVFVGAAL 114 (512)
Q Consensus 36 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 114 (512)
.+...|..|+..|...+++++|.++.+...+ ..|+...+-.. ...+.+.++.+.+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 3677899999999999999999999997766 45666543322 2244455554444333 33
Q ss_pred HHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 043142 115 IDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKV 194 (512)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 194 (512)
++...+..++.-...+...|....-+...+..+..+|-+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 444444444544444444444443344577778888888899999999999988887 66788889999999888 9999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 043142 195 ARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHID 274 (512)
Q Consensus 195 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 274 (512)
|++++.+.. ..|...+++.++.+++.++....+.|...|..++..... ..+..
T Consensus 168 A~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~----------------~~~~~ 220 (906)
T PRK14720 168 AITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLG----------------HREFT 220 (906)
T ss_pred HHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHh----------------hhccc
Confidence 988887653 236667788888888888876544333333333322211 11222
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 043142 275 PSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCK 320 (512)
Q Consensus 275 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 320 (512)
--+.++--+...|-...+++++..+++.+ ...| |.....-++..|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 22334444455566666677777777666 3333 3334444555543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.1e-05 Score=64.48 Aligned_cols=101 Identities=22% Similarity=0.282 Sum_probs=69.7
Q ss_pred CCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 043142 273 IDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVIL 349 (512)
Q Consensus 273 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 349 (512)
..| +......+...+.+.|++++|.+.++.. ...| +...|..+...+...|++++|...++++++.+|.++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 344 3445556666677777777777777665 2233 445666777777777777777777777777777777777777
Q ss_pred HHHHHhccChhHHHHHHHHHHhCC
Q 043142 350 SNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
...|...|++++|.+.++...+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc
Confidence 777777777777777777766543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.5e-05 Score=73.91 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=54.4
Q ss_pred HHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHH
Q 043142 12 KLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEE 91 (512)
Q Consensus 12 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 91 (512)
.|+..+...++++.|+.+|+++.+.++..+..|++.+...++..+|++++++..... +-+...+..-...|...++.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 333444444455555555555444444444444444444444445555555444321 1122222222333444455555
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhh
Q 043142 92 GRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKIL 135 (512)
Q Consensus 92 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 135 (512)
|.++.+++.+.. |.+..+|..|...|.+.|+++.|+..++.++
T Consensus 253 AL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 253 ALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 555555544442 2233345555555555555555555544443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.8e-05 Score=64.73 Aligned_cols=166 Identities=14% Similarity=0.042 Sum_probs=130.3
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
|... ..+-..+...|+-+.+..+....... ..-|............+.|++..|...+.+..... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3334 55667777888888888877765432 12233445557888889999999999999887765 789999999999
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 043142 117 MYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVA 195 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 195 (512)
.|.+.|++++|..-|.+..+..|+. ..++.+.-.+.-.|+++.|..++......+ .-|..+-..|.-.....|+++.|
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHH
Confidence 9999999999999999998887754 457888888888999999999998888775 34667777888888999999999
Q ss_pred HHHHHhcCCCC
Q 043142 196 RNLFEQLREKR 206 (512)
Q Consensus 196 ~~~~~~m~~~~ 206 (512)
+++-..-..+.
T Consensus 222 ~~i~~~e~~~~ 232 (257)
T COG5010 222 EDIAVQELLSE 232 (257)
T ss_pred Hhhccccccch
Confidence 99876655443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00035 Score=66.70 Aligned_cols=146 Identities=16% Similarity=0.109 Sum_probs=118.6
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCC-hhHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPF-ALKACSALSAIEEGRRIHEDVIRNKWETD-VFVGAAL 114 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l 114 (512)
....+....-.+...|++++|+..++.++.. .||...|.. ....+...++.++|.+.++.++... |+ ..+.-.+
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~ 380 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNL 380 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHH
Confidence 3444444555677889999999999998874 566655544 4577889999999999999999874 44 6777788
Q ss_pred HHHHHhCCChHHHHHHHHhhhhCCC-ChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 043142 115 IDMYAKCSCVVNARQVFDKILERDP-SEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVK 193 (512)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 193 (512)
.++|.+.|+..+|+++++.....+| |+..|..|..+|...|+..++..- ....|...|+++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A------------------~AE~~~~~G~~~ 442 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA------------------RAEGYALAGRLE 442 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH------------------HHHHHHhCCCHH
Confidence 9999999999999999999998887 667899999999999998776554 445677889999
Q ss_pred HHHHHHHhcCC
Q 043142 194 VARNLFEQLRE 204 (512)
Q Consensus 194 ~A~~~~~~m~~ 204 (512)
.|...+....+
T Consensus 443 ~A~~~l~~A~~ 453 (484)
T COG4783 443 QAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHHH
Confidence 99998887664
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.8e-06 Score=50.63 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVP 71 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 71 (512)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3678888888888888888888898888888877
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.5e-05 Score=63.72 Aligned_cols=96 Identities=14% Similarity=0.046 Sum_probs=84.4
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIY 353 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 353 (512)
+....-.+...+...|++++|..+|+-. .+.|. ...|-.|..++...|++++|+..|.++..++|++|.++..+...+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4455566677788999999999999987 34554 458889999999999999999999999999999999999999999
Q ss_pred HhccChhHHHHHHHHHHh
Q 043142 354 ARAANWEGVAKLRKLMID 371 (512)
Q Consensus 354 ~~~g~~~~a~~~~~~m~~ 371 (512)
...|+.+.|++.|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998765
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.9e-05 Score=61.78 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=87.1
Q ss_pred HHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCC
Q 043142 229 LFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK 306 (512)
Q Consensus 229 ~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 306 (512)
+|++.....+.+......+...+...|++++|...|+.+... .| +...+..+...|.+.|++++|..++++. ...
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555544444555667777888889999999999888643 34 6778888888888999999999888877 344
Q ss_pred C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 043142 307 P-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAG 344 (512)
Q Consensus 307 p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 344 (512)
| +...+..+...+...|++++|...++++++.+|++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 4 4557777888889999999999999999999987764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0064 Score=62.40 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCC
Q 043142 311 VWGALLNSCKLHGHV---KLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSI 378 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 378 (512)
+-+.|+..+.+.++. -+|+-+++..+...|.|..+-..|+.+|.-.|-+..|.++++.+--+.|..+.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 346677888887765 47777888888888999999999999999999999999999998777665443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00087 Score=58.94 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=99.0
Q ss_pred HHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH----hcc
Q 043142 215 TGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLL----GHS 290 (512)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~----~~~ 290 (512)
..|...|++++|++..+... +......=+..+.+..+++.|.+.++.|.+ +. +..+.+.|..++ .-.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~-----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---id-ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE-----NLEAAALNVQILLKMHRFDLAEKELKKMQQ---ID-EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHhccc
Confidence 34666777777777766521 122222223344566677778877777752 22 334444444444 345
Q ss_pred CChHHHHHHHHhC--CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHH-HHHHH
Q 043142 291 GRLDEACDLIMQM--RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGV-AKLRK 367 (512)
Q Consensus 291 g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~ 367 (512)
+.+.+|.-+|++| +..|+..+.+-...++...+++++|+.+++.++..++.++.+...++-.-...|+..++ .+.+.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 6788888888888 36688888888888889999999999999999999998888888888777777776554 34444
Q ss_pred HHH
Q 043142 368 LMI 370 (512)
Q Consensus 368 ~m~ 370 (512)
..+
T Consensus 267 QLk 269 (299)
T KOG3081|consen 267 QLK 269 (299)
T ss_pred HHH
Confidence 444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00053 Score=59.82 Aligned_cols=172 Identities=14% Similarity=0.181 Sum_probs=127.1
Q ss_pred CCCch-HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc-----hHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHH
Q 043142 172 FELNV-KVKTALVDMYAKCGLVKVARNLFEQLREKRV-----VSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFV 245 (512)
Q Consensus 172 ~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~ 245 (512)
..++. .++.-++-+...+|+.+.|..+++.+..+-+ .-..+| -+-..|++++|+++++.+.+..+.|.+++.
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~ddpt~~v~~K 124 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDDPTDTVIRK 124 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccCcchhHHHH
Confidence 34443 3444555666778999999998888754322 222222 245678999999999999999888888888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHc-
Q 043142 246 GVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLH- 322 (512)
Q Consensus 246 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~- 322 (512)
.=+-..-..|+--+|++-+....+. +..|...|.-|.+.|...|++++|.-.++++ -..|- ...+..+...+...
T Consensus 125 RKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 125 RKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 7777777788888998888888764 4668999999999999999999999999998 34454 34555555554433
Q ss_pred --CCHHHHHHHHHHHHhcCCCCCchHH
Q 043142 323 --GHVKLAELALEKLIELEPHDAGNYV 347 (512)
Q Consensus 323 --g~~~~A~~~~~~~~~~~p~~~~~~~ 347 (512)
.+.+.|.+.|.+.+++.|.+...+.
T Consensus 203 g~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 203 GAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred hHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 4678899999999999986554433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0044 Score=54.65 Aligned_cols=155 Identities=17% Similarity=0.155 Sum_probs=74.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhc----CCCH
Q 043142 182 LVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSR----GGLF 257 (512)
Q Consensus 182 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~----~g~~ 257 (512)
-...|.+.|++++|.+.......-+....+ +..+.+..+.+-|.+.+++|.+. .+..|.+-|..++.+ .+.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i--ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI--DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHHHhccchhh
Confidence 344455566666666665552222222222 22334455555666666666532 344444444444432 3345
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC--CCCCCHhHHHHHHHHHHHcC-CHHHHHHHHHH
Q 043142 258 DEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM--RVKPDPGVWGALLNSCKLHG-HVKLAELALEK 334 (512)
Q Consensus 258 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~ 334 (512)
..|.-+|++|.+ ...|+..+.+.+..+....|++++|..+++.. +...++.+...++-.-...| +.+--.+...+
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 556666666642 23555555555555666666666666666555 21223333333333332333 33344455555
Q ss_pred HHhcCCCC
Q 043142 335 LIELEPHD 342 (512)
Q Consensus 335 ~~~~~p~~ 342 (512)
+....|..
T Consensus 268 Lk~~~p~h 275 (299)
T KOG3081|consen 268 LKLSHPEH 275 (299)
T ss_pred HHhcCCcc
Confidence 55555544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.3e-06 Score=48.60 Aligned_cols=32 Identities=34% Similarity=0.666 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CC
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PD 240 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~ 240 (512)
+||++|.+|++.|++++|.++|++|.+.|. ||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777776 65
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00053 Score=56.81 Aligned_cols=112 Identities=11% Similarity=0.116 Sum_probs=49.7
Q ss_pred CCChHHHHHHHHhhhhCCCCh----hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhcCCHHH
Q 043142 121 CSCVVNARQVFDKILERDPSE----ATLVTVISASADIAALPQGRELHGFSWRHRFELN--VKVKTALVDMYAKCGLVKV 194 (512)
Q Consensus 121 ~g~~~~A~~~~~~m~~~~pd~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~ 194 (512)
.++...+...++.+....|+. .....+...+...|++++|...|+.+......++ ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 444455555555554444433 1122222334444444445444444444432221 1122234455555555555
Q ss_pred HHHHHHhcCCCC--chHHHHHHHHHHHcCChHHHHHHHHH
Q 043142 195 ARNLFEQLREKR--VVSWNAMITGYAMHGHSTKALDLFEK 232 (512)
Q Consensus 195 A~~~~~~m~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~ 232 (512)
|...++...... ...+......|.+.|+.++|...|++
T Consensus 104 Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555554433222 23333444555555555555555543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00071 Score=56.08 Aligned_cols=115 Identities=19% Similarity=0.191 Sum_probs=57.8
Q ss_pred cCChHHHHHHHHHhHHCCCCC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCChH
Q 043142 220 HGHSTKALDLFEKMKDEVQPD---HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS--VQHYTCMVDLLGHSGRLD 294 (512)
Q Consensus 220 ~g~~~~A~~~~~~m~~~~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~ 294 (512)
.++...+...++.+....+.+ ......+...+...|++++|...|+.+... ...|. ......|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555566666666665554422 122333445555666666666666666543 21121 123334455556666666
Q ss_pred HHHHHHHhCCCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043142 295 EACDLIMQMRVK-PDPGVWGALLNSCKLHGHVKLAELALEKL 335 (512)
Q Consensus 295 ~A~~~~~~m~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 335 (512)
+|+..++..+.. .....+......+...|+.++|...|+++
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666666554211 12224444455555555565555555543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00029 Score=55.98 Aligned_cols=102 Identities=14% Similarity=0.220 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HhHHHHHH
Q 043142 243 TFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD----PGVWGALL 316 (512)
Q Consensus 243 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll 316 (512)
++..+...+...|++++|...|..+.+...-.| ....+..+...+.+.|++++|...++.+ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455555666666666666666654321111 1234445566666666666666666655 22222 23455556
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPHDAG 344 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 344 (512)
..+...|+.++|...++++++..|+++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 6666667777777777777766666543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00016 Score=54.34 Aligned_cols=93 Identities=22% Similarity=0.271 Sum_probs=70.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc
Q 043142 280 YTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAA 357 (512)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 357 (512)
+..+...+...|++++|..++++. ...|+ ...+..+...+...+++++|.+.+++..+..|.+...+..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566677778888888887766 33343 3567777777788888888888888888888887778888888888888
Q ss_pred ChhHHHHHHHHHHhC
Q 043142 358 NWEGVAKLRKLMIDR 372 (512)
Q Consensus 358 ~~~~a~~~~~~m~~~ 372 (512)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 888888888776543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.4e-05 Score=46.33 Aligned_cols=30 Identities=33% Similarity=0.573 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEIG 68 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 68 (512)
++||++|++|++.|++++|.++|++|++.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 467777777777777777777777777765
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00011 Score=65.64 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=80.4
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHHHHHHHHcCCHH
Q 043142 250 ACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGALLNSCKLHGHVK 326 (512)
Q Consensus 250 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~ 326 (512)
-..+.+++++|...|...+ .+.| |...|.--..+|.+.|.++.|++-.+.. .+.|... +|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 3456788899999998887 4677 6777777788899999999998877766 5667665 9999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHH
Q 043142 327 LAELALEKLIELEPHDAGNYVILSNI 352 (512)
Q Consensus 327 ~A~~~~~~~~~~~p~~~~~~~~l~~~ 352 (512)
+|++.|+++++++|++......|-.+
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 99999999999999987544444333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0023 Score=56.00 Aligned_cols=162 Identities=17% Similarity=0.218 Sum_probs=123.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 043142 210 WNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLG 288 (512)
Q Consensus 210 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 288 (512)
|..++-+....|+.+.|...++++.+.-+-+...-..-..-+-..|.+++|.++++.++++ +| |..++--=+-+.-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHHHHH
Confidence 3344455667889999999999998876522221111122345579999999999999866 46 6667766666677
Q ss_pred ccCChHHHHHHHHhC--CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc---ChhHHH
Q 043142 289 HSGRLDEACDLIMQM--RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAA---NWEGVA 363 (512)
Q Consensus 289 ~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~ 363 (512)
..|+.-+|++-+... .+..|...|.-|-..|...|+++.|.-.+++++-..|.++..+..+.+.+.-.| +.+.++
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 778777888777665 355788899999999999999999999999999999999988888888876554 566788
Q ss_pred HHHHHHHhCCC
Q 043142 364 KLRKLMIDRGI 374 (512)
Q Consensus 364 ~~~~~m~~~g~ 374 (512)
+++.+..+...
T Consensus 212 kyy~~alkl~~ 222 (289)
T KOG3060|consen 212 KYYERALKLNP 222 (289)
T ss_pred HHHHHHHHhCh
Confidence 88888776554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.5e-05 Score=45.72 Aligned_cols=30 Identities=33% Similarity=0.597 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCC
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQ 238 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 238 (512)
+|+++|.+|++.|+++.|.++|++|.+.|+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 444445555555555555555555444444
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00041 Score=55.15 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=81.4
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---CchHHHH
Q 043142 278 QHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD----PGVWGALLNSCKLHGHVKLAELALEKLIELEPHD---AGNYVIL 349 (512)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l 349 (512)
.++..++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...++++....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667788899999999999999888 22343 2466678889999999999999999999988774 4578888
Q ss_pred HHHHHhccChhHHHHHHHHHHhCCC
Q 043142 350 SNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
..++.+.|++++|.+.++++.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 9999999999999999999987754
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.6e-05 Score=57.01 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=39.4
Q ss_pred CChHHHHHHHHhC-CCCC---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHH
Q 043142 291 GRLDEACDLIMQM-RVKP---DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 291 g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (512)
|++++|+.+++++ ...| +...|-.+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4455555555554 1112 233444455555666666666666655 4444444444445566666666666666665
Q ss_pred HH
Q 043142 367 KL 368 (512)
Q Consensus 367 ~~ 368 (512)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 53
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=8.4e-05 Score=52.62 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=58.8
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc-ChhHHHHHHHHHHhC
Q 043142 308 DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAA-NWEGVAKLRKLMIDR 372 (512)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 372 (512)
+..+|..+...+...|++++|+..|+++++.+|.++..|..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45688889999999999999999999999999999999999999999999 799999999887653
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.6e-05 Score=44.51 Aligned_cols=29 Identities=31% Similarity=0.755 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCC
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEV 237 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 237 (512)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0016 Score=60.89 Aligned_cols=86 Identities=10% Similarity=0.099 Sum_probs=55.6
Q ss_pred HhccCChHHHHHHHHhC-C-----CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChh
Q 043142 287 LGHSGRLDEACDLIMQM-R-----VKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWE 360 (512)
Q Consensus 287 ~~~~g~~~~A~~~~~~m-~-----~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 360 (512)
..+.|++.+|.+.+.+. . .+|+...|.....+..+.|+.++|+.-.+.+++++|.-...|..-.+++...++|+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677776666555 2 33444455555556667777777777777777777766666666666677777777
Q ss_pred HHHHHHHHHHhC
Q 043142 361 GVAKLRKLMIDR 372 (512)
Q Consensus 361 ~a~~~~~~m~~~ 372 (512)
+|.+-++...+.
T Consensus 339 ~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 339 EAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHhh
Confidence 777777665543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00037 Score=52.30 Aligned_cols=96 Identities=23% Similarity=0.151 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 043142 41 WNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120 (512)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 120 (512)
|..+...+...|++++|...|++..+... .+...+..+...+...++++.|.+.+....+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 45566666677777777777777665421 122445555666666677777777777766654 3344566666777777
Q ss_pred CCChHHHHHHHHhhhhCC
Q 043142 121 CSCVVNARQVFDKILERD 138 (512)
Q Consensus 121 ~g~~~~A~~~~~~m~~~~ 138 (512)
.|+.+.|...|....+.+
T Consensus 81 ~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 81 LGKYEEALEAYEKALELD 98 (100)
T ss_pred HHhHHHHHHHHHHHHccC
Confidence 777777777777665544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.05 Score=51.83 Aligned_cols=329 Identities=12% Similarity=0.102 Sum_probs=181.5
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHccCCCCC---chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHH
Q 043142 4 GFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRN---LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFAL 80 (512)
Q Consensus 4 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 80 (512)
+.|+..|-.||.-|...|..++.++++++|..|- ..+|..-|++=....+++....+|.+.....+.. ..|..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l--dLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL--DLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH--hHHHHHH
Confidence 4577899999999999999999999999998874 4578888888888888999999999887754443 3344444
Q ss_pred HHHhccCChH------HHHHHHHHHHH-hCCCC-ChhHHHHHHHHHH---------hCCChHHHHHHHHhhhhCC-----
Q 043142 81 KACSALSAIE------EGRRIHEDVIR-NKWET-DVFVGAALIDMYA---------KCSCVVNARQVFDKILERD----- 138 (512)
Q Consensus 81 ~~~~~~~~~~------~a~~~~~~~~~-~g~~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~~----- 138 (512)
.-..+....- .-.+.|+.++. .++.| ....|+..++..- ...++|..++.+.+|....
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 4333322111 12233333333 22333 2334444443321 1122334444444444322
Q ss_pred --------------------------------------------------C-ChhH-----------HHHHHH-------
Q 043142 139 --------------------------------------------------P-SEAT-----------LVTVIS------- 149 (512)
Q Consensus 139 --------------------------------------------------p-d~~t-----------~~~ll~------- 149 (512)
| +..| |...|.
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence 0 0000 111111
Q ss_pred ----------------------------------HHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 043142 150 ----------------------------------ASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVA 195 (512)
Q Consensus 150 ----------------------------------~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 195 (512)
-+...++-+.|.+.. ..|.+..+...--+...|.-..+-+..
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv----~rg~~~spsL~~~lse~yel~nd~e~v 352 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTV----ERGIEMSPSLTMFLSEYYELVNDEEAV 352 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHH----HhcccCCCchheeHHHHHhhcccHHHH
Confidence 111122333333322 234333333222333444444444444
Q ss_pred HHHHHhcCC---------------------------------CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CC
Q 043142 196 RNLFEQLRE---------------------------------KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PD 240 (512)
Q Consensus 196 ~~~~~~m~~---------------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~ 240 (512)
...|+...+ +=...|...+..-.+..-.+.|..+|-+..+.++ ++
T Consensus 353 ~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~ 432 (660)
T COG5107 353 YGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHH 432 (660)
T ss_pred hhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcc
Confidence 444443220 0023466666666666667777777777777774 66
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhH-HHHHHHHHhccCChHHHHHHHHhC--CCCCC--HhHHHHH
Q 043142 241 HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQH-YTCMVDLLGHSGRLDEACDLIMQM--RVKPD--PGVWGAL 315 (512)
Q Consensus 241 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~l 315 (512)
...+++++.-++ .|+...|..+|+.-... -||... -.-.+..+.+.++-+.|..+|+.. ++..+ ...|..+
T Consensus 433 vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~km 508 (660)
T COG5107 433 VYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKM 508 (660)
T ss_pred eeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHH
Confidence 777777766544 46667777777765543 233322 244555666777777777777744 22222 3467777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 316 LNSCKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 316 l~~~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
|.--..-|+...+..+-+++.+.-|..
T Consensus 509 i~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 509 IEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 777777777777777777777766653
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0022 Score=64.61 Aligned_cols=66 Identities=23% Similarity=0.240 Sum_probs=44.1
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 308 DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
+...|.++.-.....|++++|...++++++++| +...|..+...|...|+.++|...+++....+.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 334566555555566777777777777777776 456777777777777777777777776655443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0017 Score=55.55 Aligned_cols=128 Identities=13% Similarity=0.162 Sum_probs=81.5
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHH
Q 043142 207 VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PD--HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTC 282 (512)
Q Consensus 207 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 282 (512)
...+..+...+...|++++|...|++.....+ +. ...+..+...+.+.|++++|...+.+..+. .| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 34566677777778888888888887766544 22 356677777777888888888888777642 44 4555556
Q ss_pred HHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 043142 283 MVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAAN 358 (512)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 358 (512)
+...|...|+...+..-++.. ...+++|.+.++++.+.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544322221 112577888888888888866 4445555544443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0007 Score=65.22 Aligned_cols=100 Identities=17% Similarity=0.155 Sum_probs=59.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHH
Q 043142 250 ACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVK 326 (512)
Q Consensus 250 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~ 326 (512)
.+...|++++|+.+|.++++. .| +...|..+..+|.+.|++++|+..+++. .+.|+ ...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 344556666666666666532 34 4555556666666666666666666655 33343 336666666667777777
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHH
Q 043142 327 LAELALEKLIELEPHDAGNYVILSNI 352 (512)
Q Consensus 327 ~A~~~~~~~~~~~p~~~~~~~~l~~~ 352 (512)
+|+..|+++++++|.++.....+..+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 77777777777777666555444333
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00016 Score=50.47 Aligned_cols=59 Identities=14% Similarity=0.250 Sum_probs=45.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 315 LLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 315 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
+...+...|++++|+..|+++++..|.++..+..+..++...|++++|...+++..+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34566778888888888888888888888888888888888888888888888776543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0014 Score=63.25 Aligned_cols=105 Identities=11% Similarity=0.094 Sum_probs=79.3
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 043142 45 IRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCV 124 (512)
Q Consensus 45 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 124 (512)
...+...|++++|+++|+++++... -+...|..+..++...|++++|...++.+++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 3455677888888888888887532 134567777778888888888888888888775 45677788888888888888
Q ss_pred HHHHHHHHhhhhCCCChhHHHHHHHHH
Q 043142 125 VNARQVFDKILERDPSEATLVTVISAS 151 (512)
Q Consensus 125 ~~A~~~~~~m~~~~pd~~t~~~ll~~~ 151 (512)
++|+..|++..+.+|+...+...+..|
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 889888888888888776665555443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0032 Score=58.48 Aligned_cols=133 Identities=14% Similarity=0.186 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSA-CSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLL 287 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 287 (512)
+|-.++...-+.+..+.|..+|.+..+.+..+...|...... +...++.+.|..+|+...+.+ ..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
Confidence 567777777777778888888888875544344445444443 334577777999999988764 44677888889999
Q ss_pred hccCChHHHHHHHHhC-CCCCCH----hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 288 GHSGRLDEACDLIMQM-RVKPDP----GVWGALLNSCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+...++.+++.+.-|.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999887 222322 4899999999999999999999999998877643
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.13 Score=53.31 Aligned_cols=134 Identities=16% Similarity=0.170 Sum_probs=92.0
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH--hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHH
Q 043142 49 AWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKAC--SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVN 126 (512)
Q Consensus 49 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 126 (512)
...+++.+|++....+.+. .||. .|..++.++ .+.|..++|..+++.....+ ..|..+...+-..|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhH
Confidence 3457788888888887664 3554 455566654 57788888887777665555 3477888888888888888888
Q ss_pred HHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 043142 127 ARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYA 187 (512)
Q Consensus 127 A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 187 (512)
|..+|++....+|+..-...+..++.+.+++.+-.++--++.+ .++-+...+=+.++.+.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHH
Confidence 8888888888888877777788888887777665444433333 23444444444454443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0028 Score=51.87 Aligned_cols=127 Identities=13% Similarity=0.015 Sum_probs=84.4
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHccCC-CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc-hHHHHHH
Q 043142 4 GFHPVLATKLVHLYSACDCLHNAHQLFDRIP-QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNF-TFPFALK 81 (512)
Q Consensus 4 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 81 (512)
+|+-.--..+.+++-+-|.+ ..+..+. +.+....-.+...+...|++++|..+|+.+... .|... -|-.|..
T Consensus 4 ~~~~~~~~~~~~f~~~Ggsl----~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~ 77 (157)
T PRK15363 4 DPTLQQAHDTMRFFRRGGSL----RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGE 77 (157)
T ss_pred CchhhhHHHHHHHHHcCCcH----HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 33333333444444444433 3333444 444555556666677888888888888888763 34443 4555666
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhC
Q 043142 82 ACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILER 137 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 137 (512)
+|-..|++++|...|....... +.|+..+-.+..+|.+.|+.+.|++.|+.....
T Consensus 78 ~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 78 CCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777788888888888888776 467777777888888888888888888776543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0023 Score=54.73 Aligned_cols=90 Identities=11% Similarity=0.073 Sum_probs=64.4
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC--cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD--NFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAAL 114 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 114 (512)
....+..+...+...|++++|...|++.......+. ...+..+...+...|++++|...+.+.++.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 455677777888888999999999988876543332 2467777777888888888888888887764 3456666677
Q ss_pred HHHHHhCCChHHH
Q 043142 115 IDMYAKCSCVVNA 127 (512)
Q Consensus 115 i~~~~~~g~~~~A 127 (512)
...|...|+...+
T Consensus 113 g~~~~~~g~~~~a 125 (172)
T PRK02603 113 AVIYHKRGEKAEE 125 (172)
T ss_pred HHHHHHcCChHhH
Confidence 7777777764333
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.032 Score=52.50 Aligned_cols=111 Identities=13% Similarity=0.173 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHH
Q 043142 242 ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKL 321 (512)
Q Consensus 242 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 321 (512)
.+.+..+.-|...|+...|.++-... ++ |+...|...+.+|+..++|++-.++... +.++..|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 34555566677778887777765544 44 7888888889999999999887776654 3345788888889988
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 043142 322 HGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLM 369 (512)
Q Consensus 322 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 369 (512)
.|+..+|..+..++ .+..-+.+|.++|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99888888887772 2245678888888888887775444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0052 Score=57.33 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=69.1
Q ss_pred HHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHh
Q 043142 214 ITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRG-GLFDEGRMFFESMVRDYHIDPS----VQHYTCMVDLLG 288 (512)
Q Consensus 214 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~ 288 (512)
+..|...|++..|-..+.+ +...|... |++++|.+.|++..+-+.-... ..++..+...+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~--------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE--------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH--------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 4556666666666555443 44566666 7888888887777654322221 345566777888
Q ss_pred ccCChHHHHHHHHhCC---C-----CCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 043142 289 HSGRLDEACDLIMQMR---V-----KPDPG-VWGALLNSCKLHGHVKLAELALEKLIELEPH 341 (512)
Q Consensus 289 ~~g~~~~A~~~~~~m~---~-----~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 341 (512)
+.|++++|.++|++.. . +.+.. .+-..+-.+...||...|.+.+++..+.+|.
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 8899999998888762 1 11121 2223334566778999999999999888774
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0011 Score=59.92 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=85.3
Q ss_pred CC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCchHH
Q 043142 274 DP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKL---HGHVKLAELALEKLIELEPHDAGNYV 347 (512)
Q Consensus 274 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~ 347 (512)
.| |...|-.|...|.+.|+.+.|..-|.+. .+.| +...+..+..++.. .....++..+|++++..+|.|+.+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 56 8899999999999999999999998877 3333 44466666655533 33567899999999999999999999
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhCCCccC
Q 043142 348 ILSNIYARAANWEGVAKLRKLMIDRGIKKS 377 (512)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 377 (512)
.|...+...|++.+|...|+.|.+.....+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999998765433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00045 Score=48.14 Aligned_cols=61 Identities=26% Similarity=0.342 Sum_probs=48.2
Q ss_pred HHHHHhccCChHHHHHHHHhC-CCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 283 MVDLLGHSGRLDEACDLIMQM-RVKPDP-GVWGALLNSCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
+...+.+.|++++|++.|++. ...|+. ..|..+...+...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456678888999999998888 445654 4888888889999999999999999999988764
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00061 Score=47.95 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=50.6
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHH
Q 043142 84 SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVI 148 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll 148 (512)
...|++++|.++++.+.+.. +.+..++..+..+|.+.|++++|..+++++...+|+...+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 35688888888888888775 45777888899999999999999999999988888866555544
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0016 Score=63.07 Aligned_cols=114 Identities=12% Similarity=0.118 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHC--CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEI--GLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
+....++.......+.+++..++.+.+.. ....-..|..++++.|...|..+.+..++..=+..|+-||..++|.||+
T Consensus 67 ~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd 146 (429)
T PF10037_consen 67 LDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMD 146 (429)
T ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHH
Confidence 33444444444444555555555555443 1112233455666666666666666666666666666666666666666
Q ss_pred HHHhCCChHHHHHHHHhhhhCC--CChhHHHHHHHHHh
Q 043142 117 MYAKCSCVVNARQVFDKILERD--PSEATLVTVISASA 152 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~--pd~~t~~~ll~~~~ 152 (512)
.+.+.|++..|.++...|...+ .+..|+...+.+|.
T Consensus 147 ~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 147 HFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 6666666666666665554332 23344444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0014 Score=55.97 Aligned_cols=93 Identities=13% Similarity=-0.047 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 043142 277 VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD----PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSN 351 (512)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 351 (512)
...+..+...+...|++++|+..|++. ...|+ ..+|..+...+...|++++|+..++++++..|.....+..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666667777778888888888776 22222 2478888888999999999999999999998888888888888
Q ss_pred HHH-------hccChhHHHHHHHHH
Q 043142 352 IYA-------RAANWEGVAKLRKLM 369 (512)
Q Consensus 352 ~~~-------~~g~~~~a~~~~~~m 369 (512)
+|. ..|+++.|...+++-
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 887 778888666666544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00035 Score=51.68 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHH
Q 043142 255 GLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDP-GVWGALLNSCKLHGHVKLAELALE 333 (512)
Q Consensus 255 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~ 333 (512)
|+++.|+.+++++.+...-.|+...+..+..+|.+.|++++|..++++.+..|+. ...-.+..++...|++++|+++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4455555555555433111112233333455555555555555555443222222 222233444555555555555554
Q ss_pred H
Q 043142 334 K 334 (512)
Q Consensus 334 ~ 334 (512)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 3
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00022 Score=50.23 Aligned_cols=54 Identities=17% Similarity=0.323 Sum_probs=43.7
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 320 KLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
...|++++|++.|+++.+.+|.++..+..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 457888888888888888888888888888888888888888888888776543
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0032 Score=47.91 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCC-CCCcchHHHHHHHHhccCC--------hHHHHHHHHHHHHhCCCCChhH
Q 043142 40 LWNVLIRAYAWNGPYEVAIELYYRLLEIGL-VPDNFTFPFALKACSALSA--------IEEGRRIHEDVIRNKWETDVFV 110 (512)
Q Consensus 40 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~ 110 (512)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- +-..+.+|+.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556667777999999999999999999 8999999999998776532 3356788999999999999999
Q ss_pred HHHHHHHHHh
Q 043142 111 GAALIDMYAK 120 (512)
Q Consensus 111 ~~~li~~~~~ 120 (512)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0048 Score=57.31 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHH-HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKA-CSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDM 117 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 117 (512)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..||+..++. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 457777777777777777788887776432 1122333333333 22345666688888877765 46677777778888
Q ss_pred HHhCCChHHHHHHHHhhhhCCC
Q 043142 118 YAKCSCVVNARQVFDKILERDP 139 (512)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~~p 139 (512)
+.+.|+.+.|+.+|++....-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~ 101 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLP 101 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSS
T ss_pred HHHhCcHHHHHHHHHHHHHhcC
Confidence 8888888888888887766543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00082 Score=48.09 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=50.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 316 LNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 316 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
-..+.+.+++++|.++++++++.+|.++..+.....++.+.|++++|.+.++...+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35677888999999999999999999888888899999999999999999988876543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0083 Score=56.18 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=37.4
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCcc----hHHHHHHHHhccCChHHHHHHHHH
Q 043142 46 RAYAWNGPYEVAIELYYRLLEIGLVPDNF----TFPFALKACSALSAIEEGRRIHED 98 (512)
Q Consensus 46 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~ 98 (512)
.-+++.|+....+.+|+..++.|.. |-. .|.-|.++|.-.+++++|.++|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 3467888888888888888887643 333 355556677777788888887753
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0025 Score=57.33 Aligned_cols=99 Identities=11% Similarity=-0.006 Sum_probs=64.6
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHH
Q 043142 83 CSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGR 161 (512)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~ 161 (512)
..+.+++++|.+.|...++.. +.|.+.|..-..+|.+.|.++.|++-.+.....||.. .+|..|..++...|++++|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 445667777777777777664 4456666666777777777777777777777777644 46777777777777777777
Q ss_pred HHHHHHHHcCCCCchHHHHHHHH
Q 043142 162 ELHGFSWRHRFELNVKVKTALVD 184 (512)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~~li~ 184 (512)
+.|...+.. .|+-.+|-.=+.
T Consensus 170 ~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 170 EAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHhhhcc--CCCcHHHHHHHH
Confidence 776666553 444444444333
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.15 Score=47.58 Aligned_cols=96 Identities=13% Similarity=0.131 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCC--C----CH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCCCC--hh
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQ--P----DH-ITFVGVLSACSRGGLFDEGRMFFESMVRDY-HIDPS--VQ 278 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p----~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~ 278 (512)
.+..+...+.+.|++++|+++|++...... + +. ..|...+-++...|++..|...++...... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 344556677888888888888888765432 2 11 123333445666788888888888875221 22121 34
Q ss_pred HHHHHHHHHhc--cCChHHHHHHHHhCC
Q 043142 279 HYTCMVDLLGH--SGRLDEACDLIMQMR 304 (512)
Q Consensus 279 ~~~~li~~~~~--~g~~~~A~~~~~~m~ 304 (512)
....|++++-. ...+++|..-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 45556666644 345666777777764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.072 Score=48.26 Aligned_cols=54 Identities=15% Similarity=0.081 Sum_probs=26.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHH
Q 043142 248 LSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIM 301 (512)
Q Consensus 248 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (512)
..-|.+.|.+..|..-++.+++++.-.| .......++.+|...|..++|.++..
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3344555555555555555555443322 23344445555555555555554443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.29 Score=49.89 Aligned_cols=308 Identities=13% Similarity=0.036 Sum_probs=160.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC---hHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 043142 42 NVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSA---IEEGRRIHEDVIRNKWETDVFVGAALIDMY 118 (512)
Q Consensus 42 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 118 (512)
..+|.-+...+.+..|+++-..+...-..- ...|.....-+.+..+ -+.+..+-+++. ... .+...|.....-.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls-~~~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS-AKL-TPGISYAAIARRA 517 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhc-ccC-CCceeHHHHHHHH
Confidence 456677777888888888877764321111 3445555444444422 222223333322 222 3445667777777
Q ss_pred HhCCChHHHHHHHHhhhhCC------CChhHHHHHHHHHhccCChHHHHHHHHHHHHcC-----------CCCchHHHHH
Q 043142 119 AKCSCVVNARQVFDKILERD------PSEATLVTVISASADIAALPQGRELHGFSWRHR-----------FELNVKVKTA 181 (512)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~~------pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----------~~~~~~~~~~ 181 (512)
..+|+.+-|.++++.=+... .+...+...+.-+...|+.+...++.-.+...- .+.....|.-
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~ 597 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQ 597 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHH
Confidence 78999999999876543322 123345566777778888888777766655431 1111122221
Q ss_pred HHH--------HHHhcCCHHHHHHHHHhcC-------CCCchHHHHHHHHHHHcCC---hHHH-------HHHHHHhHHC
Q 043142 182 LVD--------MYAKCGLVKVARNLFEQLR-------EKRVVSWNAMITGYAMHGH---STKA-------LDLFEKMKDE 236 (512)
Q Consensus 182 li~--------~y~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~---~~~A-------~~~~~~m~~~ 236 (512)
++. .+.+.++-..+...|..=. +.-+........++++... ..+| +.+.+.+..+
T Consensus 598 ~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q 677 (829)
T KOG2280|consen 598 FMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQ 677 (829)
T ss_pred HHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 0011111111111111000 0001122222333333322 1111 1122222111
Q ss_pred -CC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHH
Q 043142 237 -VQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGA 314 (512)
Q Consensus 237 -~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 314 (512)
+. -...|.+--+.-+...|+..+|.++-.+.. -||-..|-.=+.+++..+++++-+++-++++ .+.-|.-
T Consensus 678 ~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~P 749 (829)
T KOG2280|consen 678 FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLP 749 (829)
T ss_pred hccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchh
Confidence 22 333344445555666777777777666552 4677777777777777777777777766653 2456667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 043142 315 LLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKL 368 (512)
Q Consensus 315 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (512)
+..+|.+.|+.++|.+.+-+.-. +.-...+|.+.|++.+|.++--+
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 77778888888777777655422 11456777777777777766433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0041 Score=51.22 Aligned_cols=90 Identities=16% Similarity=0.072 Sum_probs=76.5
Q ss_pred HHHHHHhccCChHHHHHHHHhCC-CC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccCh
Q 043142 282 CMVDLLGHSGRLDEACDLIMQMR-VK-PDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANW 359 (512)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 359 (512)
...--+-..|++++|..+|+-+- .. -+..-|..|..++-..+++++|...|..+..++++||.++......|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 33444567899999999998772 22 34557888888899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 043142 360 EGVAKLRKLMID 371 (512)
Q Consensus 360 ~~a~~~~~~m~~ 371 (512)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.042 Score=54.59 Aligned_cols=62 Identities=18% Similarity=0.074 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCHh
Q 043142 239 PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMR-VKPDPG 310 (512)
Q Consensus 239 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~ 310 (512)
.+..+...+..-+-+...+..|-++|.+|-. ..+++++....+++++|..+-++.| +.||+.
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy 807 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVY 807 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccccc
Confidence 3555566666666677777888888887731 2357788888889999988888885 445543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.003 Score=61.14 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=94.2
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHccCCC-C-----CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 043142 6 HPVLATKLVHLYSACDCLHNAHQLFDRIPQ-R-----NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFA 79 (512)
Q Consensus 6 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 79 (512)
+......+++......+++++..++-+... | -..+..++|+.|.+.|..++++.+++.=...|+-||.+|++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 344455566667777778888888777643 2 1235579999999999999999999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 043142 80 LKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121 (512)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 121 (512)
+..+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999998888666777776666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.011 Score=50.39 Aligned_cols=93 Identities=10% Similarity=0.007 Sum_probs=60.5
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC--cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD--NFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALI 115 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 115 (512)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++..++.. +.....++.+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 45667777777788888888888888866432221 2356677777778888888888888777653 33345555555
Q ss_pred HHHH-------hCCChHHHHHHH
Q 043142 116 DMYA-------KCSCVVNARQVF 131 (512)
Q Consensus 116 ~~~~-------~~g~~~~A~~~~ 131 (512)
..|. +.|+++.|...+
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHH
Confidence 5665 556655444333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.05 Score=49.27 Aligned_cols=173 Identities=12% Similarity=0.067 Sum_probs=94.7
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHH---HHHHHHHHhCCChHHHHHHHHhhhhCCCChh--HHHHHHHHHhc--c-
Q 043142 83 CSALSAIEEGRRIHEDVIRNKWETDVFVG---AALIDMYAKCSCVVNARQVFDKILERDPSEA--TLVTVISASAD--I- 154 (512)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~--t~~~ll~~~~~--~- 154 (512)
+...|++++|.+.|+.++..-.. +.... -.+..+|.+.+++++|...|++..+..|+.. .+...+.+.+. .
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcc
Confidence 34456666666666666554311 12222 2345566677777777777777766665432 22222222221 0
Q ss_pred --------------CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Q 043142 155 --------------AALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMH 220 (512)
Q Consensus 155 --------------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 220 (512)
.+...+...+ ..+..++.-|-...-..+|...+..+..+=...--.+..-|.+.
T Consensus 121 ~~~~~~~~~~~~~~rD~~~~~~A~------------~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~ 188 (243)
T PRK10866 121 DSALQGFFGVDRSDRDPQHARAAF------------RDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR 188 (243)
T ss_pred hhhhhhccCCCccccCHHHHHHHH------------HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0111111111 12333444444444455555544444322111222355668888
Q ss_pred CChHHHHHHHHHhHHCCC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 221 GHSTKALDLFEKMKDEVQ---PDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 221 g~~~~A~~~~~~m~~~~~---p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
|.+..|+.-|+.+.+.-+ ........+..+|...|..++|......+.
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 999999999999987644 344566778889999999999988777653
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.24 Score=46.70 Aligned_cols=109 Identities=22% Similarity=0.132 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLG 288 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 288 (512)
+.+..|.-+...|+...|..+-.+. .+||..-|-..+.+++..++|++-..+... +-.+..|..+++.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KVPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHH
Confidence 4455566666777777776665544 257888888888888888888776664321 123466777788888
Q ss_pred ccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043142 289 HSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEK 334 (512)
Q Consensus 289 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 334 (512)
+.|+..+|..++.+++ +..-+..|.+.|++.+|.+...+
T Consensus 249 ~~~~~~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP-------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhCC-------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888888877743 13445566777777777665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.096 Score=43.88 Aligned_cols=127 Identities=13% Similarity=0.096 Sum_probs=74.9
Q ss_pred CCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC---hhHHH
Q 043142 69 LVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS---EATLV 145 (512)
Q Consensus 69 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd---~~t~~ 145 (512)
+.|+...-..|..++.+.|+..+|...|++...--+..|..+.-.+.++....+++..|...++.+-+.+|+ +.+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 345555555566667777777777777777665445566666666667777777777777777776665542 23344
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 043142 146 TVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARN 197 (512)
Q Consensus 146 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 197 (512)
.+...+...|....|+.-|+.....- |+...-.-...++.+.|+.++|..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666666666666666666543 222222223344555665555443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0015 Score=46.09 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH-hHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 043142 277 VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDP-GVWGALLNSCKLHG-HVKLAELALEKLIELEP 340 (512)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~p 340 (512)
...|..+...+.+.|++++|+..|++. ...|+. ..|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456667777777778888888777766 344543 47777888888888 68888888888888776
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.01 Score=49.23 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=74.0
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHH
Q 043142 251 CSRGGLFDEGRMFFESMVRDYHIDP--SVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLA 328 (512)
Q Consensus 251 ~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A 328 (512)
....++.+.+...+..+..-+.-.+ +... ..-.......+++.- ......++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHH
Confidence 3456677777777777764432111 1111 112222333333321 23566777888899999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHH-----hCCCccCCc
Q 043142 329 ELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMI-----DRGIKKSIA 379 (512)
Q Consensus 329 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~ 379 (512)
...+++++..+|-+...|..++.+|...|+..+|.++|+++. +.|+.|++.
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 999999999999999999999999999999999999999875 357776653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.094 Score=52.68 Aligned_cols=237 Identities=14% Similarity=0.072 Sum_probs=133.2
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh------hHHH--HH--HHHHhccCChHHHHHHHHHHHHcCCCC
Q 043142 105 ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE------ATLV--TV--ISASADIAALPQGRELHGFSWRHRFEL 174 (512)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~------~t~~--~l--l~~~~~~~~~~~a~~~~~~~~~~g~~~ 174 (512)
.|.+..|..|.....+.-.++-|...|-+...-. .. .|.. .+ ...-+--|.+++|+++|-.+-++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 5778888877777666666777776665543211 00 0000 00 011122467777777776665543
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHH
Q 043142 175 NVKVKTALVDMYAKCGLVKVARNLFEQLREKR-----VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLS 249 (512)
Q Consensus 175 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~ 249 (512)
..|.++.+.|++-...++++.-...+ ..+|+.+...++....+++|.+.|..-.. ....+.
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~e 830 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIE 830 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHH
Confidence 34667777777777777765433211 25677777777777777777777664321 112444
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 043142 250 ACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAE 329 (512)
Q Consensus 250 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~ 329 (512)
++.+..++++-+.+-..+ +-+....-.+.+++.+.|.-++|.+.+-+-+ .| .+.+..|....++.+|.
T Consensus 831 cly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~p-----kaAv~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRS-LP-----KAAVHTCVELNQWGEAV 898 (1189)
T ss_pred HHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhcc-Cc-----HHHHHHHHHHHHHHHHH
Confidence 555555555544443333 2245556667778888888888877766654 22 23445566666666666
Q ss_pred HHHHHHHhcC------------CCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 330 LALEKLIELE------------PHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 330 ~~~~~~~~~~------------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
++.++..--. -.+ .-..--|..+.++|+.-+|.+++.+|.++
T Consensus 899 elaq~~~l~qv~tliak~aaqll~~-~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 899 ELAQRFQLPQVQTLIAKQAAQLLAD-ANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHhccchhHHHHHHHHHHHHHhh-cchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 6554421000 000 01123456677777777777777777654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.015 Score=51.22 Aligned_cols=125 Identities=12% Similarity=0.053 Sum_probs=57.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC--CChhHHHHHH-----HHH
Q 043142 79 ALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD--PSEATLVTVI-----SAS 151 (512)
Q Consensus 79 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--pd~~t~~~ll-----~~~ 151 (512)
++..+--.+.+.-....+..+++...+.++.....|+.+-.+.||.+.|...|+...+.. .|..+++.+. ..+
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 333333344444444445555444434444555555555555555555555555443221 1222222211 122
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchHHHH--HHHHHHHhcCCHHHHHHHHHhcCCCC
Q 043142 152 ADIAALPQGRELHGFSWRHRFELNVKVKT--ALVDMYAKCGLVKVARNLFEQLREKR 206 (512)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~y~~~g~~~~A~~~~~~m~~~~ 206 (512)
...+++..+...+.++.... +.++...| +|+.+| .|+..+|.++.+.|.+.+
T Consensus 263 lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLY--LGKLKDALKQLEAMVQQD 316 (366)
T ss_pred ecccchHHHHHHHhhccccC-CCchhhhchHHHHHHH--HHHHHHHHHHHHHHhccC
Confidence 23334444444444444332 22333333 344444 477888888888877644
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.027 Score=56.89 Aligned_cols=136 Identities=10% Similarity=-0.034 Sum_probs=86.9
Q ss_pred CCCCchHHHHHHHHHHhcC-----CchHHHHHHHHHHHCCCCCCc-chHHHHHHHHhcc--------CChHHHHHHHHHH
Q 043142 34 PQRNLFLWNVLIRAYAWNG-----PYEVAIELYYRLLEIGLVPDN-FTFPFALKACSAL--------SAIEEGRRIHEDV 99 (512)
Q Consensus 34 ~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~--------~~~~~a~~~~~~~ 99 (512)
+..|..+|...+++..... ....|..+|++..+. .|+. ..|..+..++... .++..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3457888988888765432 266889999998874 5664 2344333322211 1123333333333
Q ss_pred HHh-CCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 043142 100 IRN-KWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHR 171 (512)
Q Consensus 100 ~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 171 (512)
... ..+.+..+|.++.-.+...|++++|...|++..+.+|+...|..+...+...|+.++|...+.++....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 332 123455677777666667788888888888888888877777777777777888888888777776654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.014 Score=48.69 Aligned_cols=130 Identities=13% Similarity=0.114 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhCC-CCC---CHhHHH
Q 043142 239 PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQMR-VKP---DPGVWG 313 (512)
Q Consensus 239 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~~~~ 313 (512)
|+...-..|..+..+.|+..+|...|++.. . |+-. |......+..+....++..+|...++... ..| ++.+--
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qal-s-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQAL-S-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-c-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 677667778888888888888888888875 2 5433 67777777778888888888888777761 112 222444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 314 ALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 314 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
.+.+.+...|.+..|+..|+.++...|. +..-......+.++|+.+++..-+..+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 5667778888888888888888877663 23444455667777877776655554443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.01 Score=51.13 Aligned_cols=96 Identities=16% Similarity=0.275 Sum_probs=63.9
Q ss_pred HHHHHhc--CCCCchHHHHHHHHHHHc-----CChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcC-------------
Q 043142 196 RNLFEQL--REKRVVSWNAMITGYAMH-----GHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRG------------- 254 (512)
Q Consensus 196 ~~~~~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~------------- 254 (512)
...|+.. ..++..+|..++..|.+. |..+=....++.|.+-|+ -|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 455666666666666543 555666666777777777 7888888888776542
Q ss_pred ---CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCC
Q 043142 255 ---GLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGR 292 (512)
Q Consensus 255 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 292 (512)
.+-+-|+.++++| +.+|+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 1345577777777 566777777777777777776654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.012 Score=50.66 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=75.9
Q ss_pred HHHHHccC--CCCCchHHHHHHHHHHhc-----CCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC-----------
Q 043142 26 AHQLFDRI--PQRNLFLWNVLIRAYAWN-----GPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALS----------- 87 (512)
Q Consensus 26 A~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------- 87 (512)
-...|++. ..+|-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||..+-+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 44566665 457888888888888755 667777777888889999999999999998875422
Q ss_pred -----ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043142 88 -----AIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC 123 (512)
Q Consensus 88 -----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (512)
+-+-|.+++++|...|+-||..++..|++.+.+.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 235678888888888888888888888888876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.17 Score=48.26 Aligned_cols=160 Identities=19% Similarity=0.106 Sum_probs=103.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---Cc----hHHHHHHHHHHH---cCChHHHHHHHHHhHHCCC-CCHHHHHHHHH
Q 043142 181 ALVDMYAKCGLVKVARNLFEQLREK---RV----VSWNAMITGYAM---HGHSTKALDLFEKMKDEVQ-PDHITFVGVLS 249 (512)
Q Consensus 181 ~li~~y~~~g~~~~A~~~~~~m~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~ 249 (512)
.++-.|-...+++...++.+.+... ++ ..-.....++-+ .|+.++|++++..+..... +++.||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688888888888888888754 11 111223345556 7888999999988555444 88888887776
Q ss_pred HHhc---------CCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChH----HHHHHH---HhC----C---CC
Q 043142 250 ACSR---------GGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLD----EACDLI---MQM----R---VK 306 (512)
Q Consensus 250 a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~m----~---~~ 306 (512)
.|-. ...+++|...|.+.- .+.|+..+---++..+...|.-. +..++- ... + -.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6532 234777888887654 55676544333333444444322 222222 111 1 22
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 307 PDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 307 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
.|-.-+.+++.++.-.|+.+.|.+..+++.++.|+.-
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 4555778899999999999999999999999987653
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0093 Score=54.47 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=46.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCCCH----hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 043142 280 YTCMVDLLGHSGRLDEACDLIMQM-RVKPDP----GVWGALLNSCKLHGHVKLAELALEKLIELEPHD---AGNYVILSN 351 (512)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 351 (512)
|...+..+.+.|++++|...|+.+ ...|+. ..+-.+...|...|++++|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334445555555555544 112221 233445555556666666666666666555443 333344455
Q ss_pred HHHhccChhHHHHHHHHHHh
Q 043142 352 IYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 352 ~~~~~g~~~~a~~~~~~m~~ 371 (512)
.|...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55566666666666665544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.32 Score=46.09 Aligned_cols=252 Identities=12% Similarity=-0.017 Sum_probs=140.7
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043142 44 LIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC 123 (512)
Q Consensus 44 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (512)
....+.+...+.+|+..+...++.... +..-|..-...+...++++++.--.++-++.. +-....+.-.-.++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHH
Confidence 344556666777777777777765422 22334444444455555555543333322221 0011111112222222222
Q ss_pred hHHHHHHHH------------hhhh---CC---CChhHHHHHHHHH-hccCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 043142 124 VVNARQVFD------------KILE---RD---PSEATLVTVISAS-ADIAALPQGRELHGFSWRHRFELNVKVKTALVD 184 (512)
Q Consensus 124 ~~~A~~~~~------------~m~~---~~---pd~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 184 (512)
..+|...|+ .... .+ |.-.++-.+-.-| ...++.++|.++-..+++..- ...+..+++
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vr 209 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVR 209 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhc
Confidence 223322222 1111 11 3334444444433 667888888888777766531 112222222
Q ss_pred --HHHhcCCHHHHHHHHHhcCCCCc---------------hHHHHHHHHHHHcCChHHHHHHHHHhHHCCC----CCHHH
Q 043142 185 --MYAKCGLVKVARNLFEQLREKRV---------------VSWNAMITGYAMHGHSTKALDLFEKMKDEVQ----PDHIT 243 (512)
Q Consensus 185 --~y~~~g~~~~A~~~~~~m~~~~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----p~~~t 243 (512)
++--.++.+.|...|++...-|+ ..|..-..-..++|++.+|.+.|.+.+...+ |+...
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 23346788888888888765443 2233344556788999999999999876544 66667
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 244 FVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 244 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
|.....+..+.|+.++|+.--+... .++|. +..|..-..++.-.++|++|.+.+++.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778889999999998877765 34442 233334444555667888888888766
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.15 Score=44.80 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=28.3
Q ss_pred HHhccCChHHHHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC
Q 043142 82 ACSALSAIEEGRRIHEDVIRNKWE--TDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd 140 (512)
.+...|++.+|.+.|+.+...-.. --....-.++.+|.+.|+++.|...|++.....|+
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 344556666666666666554211 11222333455555666666666666665555544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.032 Score=43.99 Aligned_cols=90 Identities=16% Similarity=0.223 Sum_probs=60.1
Q ss_pred HHHHHHHcCChHHHHHHHHHhHHCCCCC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 043142 213 MITGYAMHGHSTKALDLFEKMKDEVQPD---HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLG 288 (512)
Q Consensus 213 li~~~~~~g~~~~A~~~~~~m~~~~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 288 (512)
+..++-..|+.++|+.+|++....|.++ ...+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 4456777888888888888888877622 34566677788888888888888888875531111 2222233344667
Q ss_pred ccCChHHHHHHHHh
Q 043142 289 HSGRLDEACDLIMQ 302 (512)
Q Consensus 289 ~~g~~~~A~~~~~~ 302 (512)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77888887776644
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.42 Score=44.97 Aligned_cols=81 Identities=17% Similarity=0.145 Sum_probs=42.0
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcc--hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHH
Q 043142 51 NGPYEVAIELYYRLLEIGLVPDNF--TFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNAR 128 (512)
Q Consensus 51 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 128 (512)
.|+++.|.+-|+.|... |... -+..|.-..-+.|+.+.|.+.-+..-..- +.-...+.+.+...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 46666666666666541 1111 11222222345566666665555544332 223445566666666666666666
Q ss_pred HHHHhhh
Q 043142 129 QVFDKIL 135 (512)
Q Consensus 129 ~~~~~m~ 135 (512)
++.+.-.
T Consensus 209 kLvd~~~ 215 (531)
T COG3898 209 KLVDAQR 215 (531)
T ss_pred HHHHHHH
Confidence 6666544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.024 Score=43.25 Aligned_cols=78 Identities=12% Similarity=0.174 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhHHCCC--CCHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHhcCCCCChhHH
Q 043142 211 NAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGG--------LFDEGRMFFESMVRDYHIDPSVQHY 280 (512)
Q Consensus 211 ~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 280 (512)
...|..+...+++.....+|+.++..++ |+..+|+.++.+..+.. .+-+.+.+|+.|+.. +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3445556666888888888888888877 88888888888776532 244566777888744 788888888
Q ss_pred HHHHHHHhc
Q 043142 281 TCMVDLLGH 289 (512)
Q Consensus 281 ~~li~~~~~ 289 (512)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.00082 Score=39.58 Aligned_cols=33 Identities=33% Similarity=0.583 Sum_probs=30.6
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhccChhHHHH
Q 043142 332 LEKLIELEPHDAGNYVILSNIYARAANWEGVAK 364 (512)
Q Consensus 332 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 364 (512)
|+++++++|+++.+|..|..+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.038 Score=43.62 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=30.0
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC
Q 043142 82 ACSALSAIEEGRRIHEDVIRNKWETD--VFVGAALIDMYAKCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd 140 (512)
++-..|+.++|..+|+..+..|+..+ ...+-.+...|...|++++|..+|++.....|+
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 34445555555555555555554332 123333445555556666666666555554443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.77 Score=46.55 Aligned_cols=114 Identities=20% Similarity=0.118 Sum_probs=55.9
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHccCCC-CCchH------------HHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 043142 5 FHPVLATKLVHLYSACDCLHNAHQLFDRIPQ-RNLFL------------WNVLIRAYAWNGPYEVAIELYYRLLEIGLVP 71 (512)
Q Consensus 5 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 71 (512)
|.+-.|..|...-.+.-.++-|+..|-+... +.+.. -.+=|.+ --|++++|.++|-+|-++++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL-- 765 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL-- 765 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh--
Confidence 5556666666655555566666666655432 11111 0111122 23777777777777654322
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHhCC-CC-C---hhHHHHHHHHHHhCCChHHHHHHHHh
Q 043142 72 DNFTFPFALKACSALSAIEEGRRIHEDVIRNKW-ET-D---VFVGAALIDMYAKCSCVVNARQVFDK 133 (512)
Q Consensus 72 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~ 133 (512)
.+....+.|++-.+.++++ .|- .. | ...++.+...++....|++|.+.+..
T Consensus 766 -------Aielr~klgDwfrV~qL~r----~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 766 -------AIELRKKLGDWFRVYQLIR----NGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred -------hHHHHHhhhhHHHHHHHHH----ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2333445555554444432 211 11 1 23455555555555556666555544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.028 Score=50.98 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=55.5
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHh---ccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACS---ALSAIEEGRRIHEDVIRNKWETDVFVGAA 113 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 113 (512)
|...|-.|...|...|++..|..-|.+..+.. .+|...+..+..++. ....-.++..+++++++.. +.|+....-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 45556666666666666666666666654421 112223333333322 1223345556666665554 334444444
Q ss_pred HHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHH
Q 043142 114 LIDMYAKCSCVVNARQVFDKILERDPSEATLVTVI 148 (512)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll 148 (512)
|...+...|++.+|...|+.|....|....+..++
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 55555566666666666666655555444444443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0098 Score=42.37 Aligned_cols=61 Identities=13% Similarity=0.069 Sum_probs=37.1
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhH
Q 043142 82 ACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEAT 143 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t 143 (512)
.+.+.++++.|.++++.+++.. |.+...+.....+|.+.|++++|...|+...+.+|+..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 4455566666666666666654 345555666666666666666666666666666655433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0035 Score=39.54 Aligned_cols=42 Identities=26% Similarity=0.444 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 043142 310 GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSN 351 (512)
Q Consensus 310 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 351 (512)
.+|..+...|...|++++|+++++++++..|+++..+..|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788999999999999999999999999999888777653
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.057 Score=49.40 Aligned_cols=100 Identities=13% Similarity=0.154 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HhHHHHHHH
Q 043142 244 FVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD----PGVWGALLN 317 (512)
Q Consensus 244 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~ 317 (512)
|...+....+.|++++|...|+.+++.+.-.+ ....+.-+...|...|++++|...|+.+ ...|+ ...+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444334556777777777777775531111 1245666777777788888887777776 11222 234555566
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 318 SCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 318 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
.+...|+.+.|...++++++..|++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 67788899999999999888888764
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.01 Score=57.07 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=53.5
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG----VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILS 350 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 350 (512)
+...++.+..+|.+.|++++|+..|++. .+.|+.. +|..+..+|...|+.++|+..++++++..++ .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 4556666666677777777777776664 4555533 4666666777777777777777777665321 121111
Q ss_pred H--HHHhccChhHHHHHHHHHHhCCC
Q 043142 351 N--IYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 351 ~--~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
. .+....+..+..++++.....|.
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1 11122333455566666665554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.22 Score=49.77 Aligned_cols=258 Identities=13% Similarity=0.022 Sum_probs=133.6
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHH
Q 043142 71 PDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISA 150 (512)
Q Consensus 71 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~ 150 (512)
|....+.+-+..+...|.+++|.++-. +.....-|..|.......=+++-|++.+.+.....
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iac------lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~------------ 615 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIAC------LGVTDTDWRELAMEALEALDFETARKAYIRVRDLR------------ 615 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccc------cceecchHHHHHHHHHhhhhhHHHHHHHHHHhccH------------
Confidence 333344444455566666666655422 11222334445444444455555555555543221
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--chHHHH-----HHHHHHHcCCh
Q 043142 151 SADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR--VVSWNA-----MITGYAMHGHS 223 (512)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~-----li~~~~~~g~~ 223 (512)
+-+...-++.+.++|-.|+... +.+.++-.|++.+|-++|.+--..+ ...|+- ..+-|...|..
T Consensus 616 ------~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~ 686 (1081)
T KOG1538|consen 616 ------YLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDP 686 (1081)
T ss_pred ------HHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCCh
Confidence 1122233456667776676543 4455666788888888886543222 122221 12234444444
Q ss_pred HHHHHHHHHhHHC--CC--CCHHHHHHHHHHHhcCCCHHHHHHHHH-----HHHHhcCCCC---ChhHHHHHHHHHhccC
Q 043142 224 TKALDLFEKMKDE--VQ--PDHITFVGVLSACSRGGLFDEGRMFFE-----SMVRDYHIDP---SVQHYTCMVDLLGHSG 291 (512)
Q Consensus 224 ~~A~~~~~~m~~~--~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~-----~~~~~~~~~p---~~~~~~~li~~~~~~g 291 (512)
++-..+.++-.+. .+ |- +....+..+|+.++|..+.. .|.-+-+-+. +..+...+..-+-+..
T Consensus 687 ~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~ 761 (1081)
T KOG1538|consen 687 KEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLD 761 (1081)
T ss_pred HHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhcc
Confidence 4444443332111 11 22 12233445677777766532 1111111111 2334444444455556
Q ss_pred ChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 043142 292 RLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLM 369 (512)
Q Consensus 292 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 369 (512)
.+.-|-++|++|+-. .+++......+++.+|..+.++..+.-| ..|..-..-++...++++|.+.|.+.
T Consensus 762 ~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 762 SPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCccccc---cccchHHHHhhhhhhHHHHHHHHHHh
Confidence 666677777777622 2455566677788888877776666555 35556667778888888888888654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.044 Score=43.69 Aligned_cols=96 Identities=8% Similarity=0.144 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHC-CC-CCHHHHHHHHHHHhc
Q 043142 176 VKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQ-PDHITFVGVLSACSR 253 (512)
Q Consensus 176 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~-p~~~t~~~ll~a~~~ 253 (512)
..++.+++.++++.|+++....+.+..-.-|+.. -...+. .... .. |+..+..+++.+|+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~----------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD----------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc----------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 4566677777777777777777776543222110 000000 2222 33 888888888888888
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 043142 254 GGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLG 288 (512)
Q Consensus 254 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 288 (512)
.+++..|.++.+.+.+.++++-+..+|..|+.-..
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88999999888888888887767778877776443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.047 Score=43.51 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSC 319 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 319 (512)
|..++..++.++++.|+++....+.+.. .|+.++...- .+. +-..-+..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~---------~~~------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKK---------EGD------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCccc---------cCc------cCCCCCCCCCHHHHHHHHHHH
Confidence 4567778888888888888888777654 3655432110 000 111114556666777777777
Q ss_pred HHcCCHHHHHHHHHHHHhcC--CCCCchHHHHHHHH
Q 043142 320 KLHGHVKLAELALEKLIELE--PHDAGNYVILSNIY 353 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~ 353 (512)
...+++..|.++.+...+.- |-...+|..|++=.
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 77777777777776666543 22344555555433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.78 Score=40.87 Aligned_cols=226 Identities=12% Similarity=0.032 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhhhhCC-CChhHHHHHHHHH-hccCC-hHH-HHHHHHHHHHc-CCCCchHHHHHHH
Q 043142 109 FVGAALIDMYAKCSCVVNARQVFDKILERD-PSEATLVTVISAS-ADIAA-LPQ-GRELHGFSWRH-RFELNVKVKTALV 183 (512)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-pd~~t~~~ll~~~-~~~~~-~~~-a~~~~~~~~~~-g~~~~~~~~~~li 183 (512)
..|+.-+..+.+....++|..-+....+.+ ||- -|...-..+ .+.|. ..- .+.+|..+.+. |. -+++|.
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl-~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgn-----pqesLd 143 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDL-YYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGN-----PQESLD 143 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcce-eeeeccccCCCCcCccccHHHHHHHHHHHHhcCC-----cHHHHH
Confidence 455666777788888888776666555544 110 010000001 11222 111 22333333332 21 245555
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--CCc--------hHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHh
Q 043142 184 DMYAKCGLVKVARNLFEQLRE--KRV--------VSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACS 252 (512)
Q Consensus 184 ~~y~~~g~~~~A~~~~~~m~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~ 252 (512)
..|.-..-+++-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+.++++.++..+ .++.....|.+.-.
T Consensus 144 Rl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M 223 (366)
T KOG2796|consen 144 RLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM 223 (366)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence 555544444444444433222 112 2334555666666777777777777777665 66666777777777
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCChhHHHH-----HHHHHhccCChHHHHHHHHhCCC-CC-CHhHHHHHHHHHHHcCCH
Q 043142 253 RGGLFDEGRMFFESMVRDYHIDPSVQHYTC-----MVDLLGHSGRLDEACDLIMQMRV-KP-DPGVWGALLNSCKLHGHV 325 (512)
Q Consensus 253 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~ 325 (512)
+.|+.+.|..+|+...+..+ +.+....+. ....|.-++++.+|...+.++.. .| |....|.-.-+..-.|+.
T Consensus 224 Q~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 224 QIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred hcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 77888888877776643322 222222222 22234444555555555555521 11 222222222222334555
Q ss_pred HHHHHHHHHHHhcCCC
Q 043142 326 KLAELALEKLIELEPH 341 (512)
Q Consensus 326 ~~A~~~~~~~~~~~p~ 341 (512)
..|.+..+.+++..|.
T Consensus 303 ~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 303 KDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHhccCCc
Confidence 6666666666665554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0058 Score=44.26 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC---CCchHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIEL----EPH---DAGNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
+++.+...|...|++++|+..++++++. ++. ...++..++..|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6777777788888888888888887754 221 24567778888888888888888887754
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.36 Score=42.49 Aligned_cols=60 Identities=20% Similarity=0.079 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCC--cchHHHHHHHHhccCChHHHHHHHHHHHHh
Q 043142 43 VLIRAYAWNGPYEVAIELYYRLLEIGLVPD--NFTFPFALKACSALSAIEEGRRIHEDVIRN 102 (512)
Q Consensus 43 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 102 (512)
.....+.+.|++.+|.+.|+.+...-.... ....-.+..++-+.|+++.|...++..++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455566777777777776665421100 123344555666667777777777666655
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.75 Score=44.97 Aligned_cols=97 Identities=14% Similarity=0.243 Sum_probs=45.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHh--HHHHHHHHHHHc
Q 043142 247 VLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMR-V-KPDPG--VWGALLNSCKLH 322 (512)
Q Consensus 247 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~--~~~~ll~~~~~~ 322 (512)
+..++.+.|+.++|.+.++++.++............|+..|...+.+.++..++.+.. + -|... .|+..+-..+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 4444445555555555555554332211123344445555555555555555555442 1 12222 343333232222
Q ss_pred CC---------------HHHHHHHHHHHHhcCCCCC
Q 043142 323 GH---------------VKLAELALEKLIELEPHDA 343 (512)
Q Consensus 323 g~---------------~~~A~~~~~~~~~~~p~~~ 343 (512)
++ -..|.+++.++.+.+|..+
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 22 1346678888888877654
|
The molecular function of this protein is uncertain. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.012 Score=42.64 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=35.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-------C-CCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQM-------R-VKPD-PGVWGALLNSCKLHGHVKLAELALEKLIE 337 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 337 (512)
+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|++.+++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555555666666555555544 1 1122 33666777777777777777777777665
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.5 Score=41.53 Aligned_cols=302 Identities=17% Similarity=0.133 Sum_probs=187.0
Q ss_pred CchHHHHHHHHHHHCCCCCCcchHHHHHHHH--hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH--HHhCCChHHHH
Q 043142 53 PYEVAIELYYRLLEIGLVPDNFTFPFALKAC--SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDM--YAKCSCVVNAR 128 (512)
Q Consensus 53 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~ 128 (512)
.+..+...|..-+.. ..|..|-.++ +-.|+-..|.+.-.+..+. +..|..-.-.|+.+ -.-.|++++|.
T Consensus 68 sP~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence 345566666665432 1244444333 3456777777766544322 23333333333332 23468999999
Q ss_pred HHHHhhhhCCCCh--hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---
Q 043142 129 QVFDKILERDPSE--ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR--- 203 (512)
Q Consensus 129 ~~~~~m~~~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--- 203 (512)
+-|+.|... |.. .-+..|.-..-+.|+.+.|++.-+..-... +.-...+.+.+...+..|+|+.|+++.+.-.
T Consensus 141 ~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~ 218 (531)
T COG3898 141 KKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK 218 (531)
T ss_pred HHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 999998753 221 123334444456788888888777766543 2334577788999999999999999998654
Q ss_pred --CCCch--HHHHHHHHHHH---cCChHHHHHHHHHhHHCCCCCHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 043142 204 --EKRVV--SWNAMITGYAM---HGHSTKALDLFEKMKDEVQPDHIT-FVGVLSACSRGGLFDEGRMFFESMVRDYHIDP 275 (512)
Q Consensus 204 --~~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 275 (512)
++++. .-..|+.+-+. .-+...|...-.+..+.. ||.+. -..-..++.+.|++.++-.+++.+.+. .|
T Consensus 219 vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~-pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---eP 294 (531)
T COG3898 219 VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLA-PDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EP 294 (531)
T ss_pred hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CC
Confidence 44431 22233332221 234555665555444332 44332 223456788999999999999999743 67
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC----CCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQM----RVKPDP-GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILS 350 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 350 (512)
.+..+...+ +.+.|+.. ++=+++. .++||. .+-..+..+-...|++..|..-.+.+....|.. +.|..|.
T Consensus 295 HP~ia~lY~--~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlA 369 (531)
T COG3898 295 HPDIALLYV--RARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLA 369 (531)
T ss_pred ChHHHHHHH--HhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHH
Confidence 666554433 45666533 3323222 245554 477778888889999999999998888888865 5888888
Q ss_pred HHHHh-ccChhHHHHHHHHHHhC
Q 043142 351 NIYAR-AANWEGVAKLRKLMIDR 372 (512)
Q Consensus 351 ~~~~~-~g~~~~a~~~~~~m~~~ 372 (512)
+.-.. .|+-.++.+.+-+-.+.
T Consensus 370 dIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 370 DIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHhhccCchHHHHHHHHHHhcC
Confidence 87754 49999988888776554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.94 E-value=2.4 Score=43.60 Aligned_cols=303 Identities=14% Similarity=0.014 Sum_probs=169.7
Q ss_pred HHHHHHHccCChHHHHHHHccCCCCC---chHHHHHHHHHHhcCCc--hHHHHHHHHHHHCCCCCCcchHHHHHHHHhcc
Q 043142 12 KLVHLYSACDCLHNAHQLFDRIPQRN---LFLWNVLIRAYAWNGPY--EVAIELYYRLLEIGLVPDNFTFPFALKACSAL 86 (512)
Q Consensus 12 ~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 86 (512)
.+++-+...+.+..|+++-..+..|. ...|.....-+.+..+. +++++..++=...... ...+|..+.+-....
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHHHHhc
Confidence 45666777788888888888777664 34455555555555322 2344433332222122 345677777777778
Q ss_pred CChHHHHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC------------CChh-HHHHHHH
Q 043142 87 SAIEEGRRIHEDVIRNKWE----TDVFVGAALIDMYAKCSCVVNARQVFDKILERD------------PSEA-TLVTVIS 149 (512)
Q Consensus 87 ~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------pd~~-t~~~ll~ 149 (512)
|+.+.|..+.+.=...+.. .+..-+...+.-..+.|+.+-...++-.+...- |... .|.-++.
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r 600 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMR 600 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 8888887776532111100 111223344445556666666665555443321 2211 1222211
Q ss_pred ---------HHhccCChHHHHHHHHHH---H--HcCCCCchHHHHHHHHHHHhcCCHHHHHHH----------HHhcCC-
Q 043142 150 ---------ASADIAALPQGRELHGFS---W--RHRFELNVKVKTALVDMYAKCGLVKVARNL----------FEQLRE- 204 (512)
Q Consensus 150 ---------~~~~~~~~~~a~~~~~~~---~--~~g~~~~~~~~~~li~~y~~~g~~~~A~~~----------~~~m~~- 204 (512)
.+-+..+......++-+- . ..|..|+ .....+.+++.....-..+. ++.+..
T Consensus 601 ~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q 677 (829)
T KOG2280|consen 601 HQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQ 677 (829)
T ss_pred hhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111122222222221111 0 1123333 33344555555442222222 222221
Q ss_pred CC----chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHH
Q 043142 205 KR----VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHY 280 (512)
Q Consensus 205 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 280 (512)
.+ -.+.+--+.-+...|+..+|.++-.+.+ +||..-|-.=+.+++..+++++-+++-+... .+.-|
T Consensus 678 ~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---ipdKr~~wLk~~aLa~~~kweeLekfAkskk-------sPIGy 747 (829)
T KOG2280|consen 678 FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---IPDKRLWWLKLTALADIKKWEELEKFAKSKK-------SPIGY 747 (829)
T ss_pred hccccccCcHHHHHHHHHHccchHHHHHHHHhcC---CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------CCCCc
Confidence 11 1345555666778899889988776553 5999999888999999999998777655442 14567
Q ss_pred HHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043142 281 TCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEK 334 (512)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 334 (512)
.-.+..+.+.|+.++|.+++.+.+-.+ -...+|.+.|++.+|.++.-+
T Consensus 748 ~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 748 LPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 778899999999999999998875222 466778888888888776544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=1.2 Score=39.26 Aligned_cols=191 Identities=20% Similarity=0.191 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHH-HH
Q 043142 178 VKTALVDMYAKCGLVKVARNLFEQLRE-----KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLS-AC 251 (512)
Q Consensus 178 ~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~-a~ 251 (512)
........+...+++..+...+..... .....+......+...+....+...+.........+......... ++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 333444444444444444444444321 112333334444444444555555555554433311111111112 45
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC--HhHHHHHHHHHHHcCC
Q 043142 252 SRGGLFDEGRMFFESMVRDYHIDP----SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD--PGVWGALLNSCKLHGH 324 (512)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~g~ 324 (512)
...|+++.+...+..... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+...++
T Consensus 141 ~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 141 YELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 555555555555555532 122 2222333333344555666666665555 22222 3455555666666666
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 325 VKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 325 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
++.|...+.......|.....+..+...+...+.++++...+.....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665334444444555555556666666655544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.11 Score=49.23 Aligned_cols=65 Identities=11% Similarity=0.001 Sum_probs=58.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 309 PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 309 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
..++..|..++.+.+++..|++...+.++.+|+|.....--..+|...|+++.|+..|+++.+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 44677888889999999999999999999999999999999999999999999999999997643
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.099 Score=43.21 Aligned_cols=70 Identities=17% Similarity=0.194 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH----HhcCCCCChhH
Q 043142 210 WNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV----RDYHIDPSVQH 279 (512)
Q Consensus 210 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~ 279 (512)
...++..+...|++++|+.+.+.+....+-|...+..++.++...|+..+|.++|+.+. ++.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455566667777777777777777766777777777777777777777777766553 23466666544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.046 Score=51.39 Aligned_cols=257 Identities=11% Similarity=0.037 Sum_probs=172.6
Q ss_pred HHHHhCCChHHHHHHHHhhhhCCCCh-----hHHHHHHHHHhccCChHHHHHHHHHHH--Hc--CC-CCchHHHHHHHHH
Q 043142 116 DMYAKCSCVVNARQVFDKILERDPSE-----ATLVTVISASADIAALPQGRELHGFSW--RH--RF-ELNVKVKTALVDM 185 (512)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~~~pd~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~--~~--g~-~~~~~~~~~li~~ 185 (512)
.-++|.|+......+|+...+.+.+. ..|..|.++|.-.+++++|.+.|..=+ .. |- .-.......|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 35789999999999999998877432 357777888888999999999875322 11 10 1112223344555
Q ss_pred HHhcCCHHHHHHHHHhcC----CC-----CchHHHHHHHHHHHcCC--------------------hHHHHHHHHHh---
Q 043142 186 YAKCGLVKVARNLFEQLR----EK-----RVVSWNAMITGYAMHGH--------------------STKALDLFEKM--- 233 (512)
Q Consensus 186 y~~~g~~~~A~~~~~~m~----~~-----~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m--- 233 (512)
+--.|.+++|.-.-.+-. +- ....+-.+...|...|+ ++.|.++|.+-
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 555677888765432211 11 12455557778876543 12233344332
Q ss_pred -HHCCC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHH---HHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC---
Q 043142 234 -KDEVQ--PDHITFVGVLSACSRGGLFDEGRMFFESM---VRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM--- 303 (512)
Q Consensus 234 -~~~~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 303 (512)
.+.|- .....|..|...|.-.|+++.|+..++.- .+++|-+. ....++.|..++.-.|+++.|.+.++..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11121 23345666666677788999999877643 23444333 4567788888999999999999988765
Q ss_pred ----C-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 304 ----R-VKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPH------DAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 304 ----~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+ ......+.-+|...|....+++.|+..+.+-+.+... ...++.+|.++|...|..++|+.+.+.-.+.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2 1123346667888888889999999999999998832 4568899999999999999999999888753
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.3 Score=42.41 Aligned_cols=100 Identities=18% Similarity=0.081 Sum_probs=61.8
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCC--CCCcc-hHHHHHHHHhc---cCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 43 VLIRAYAWNGPYEVAIELYYRLLEIGL--VPDNF-TFPFALKACSA---LSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 43 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~-t~~~ll~~~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
.++-+|-...+++..+++.+.|..... .++.. .-....-|+.+ .|+.++|++++..++...-.+++.++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 455568888888888888888866411 11111 11112234445 7888889888888666555777778777776
Q ss_pred HHHh---------CCChHHHHHHHHhhhhCCCChh
Q 043142 117 MYAK---------CSCVVNARQVFDKILERDPSEA 142 (512)
Q Consensus 117 ~~~~---------~g~~~~A~~~~~~m~~~~pd~~ 142 (512)
.|-. ....+.|+..|.+.-+.+||..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y 260 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY 260 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence 6532 1235677777777666665543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.4 Score=38.74 Aligned_cols=54 Identities=13% Similarity=0.202 Sum_probs=28.7
Q ss_pred HHHcCChHHHHHHHHHhHHCCC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 043142 217 YAMHGHSTKALDLFEKMKDEVQ---PDHITFVGVLSACSRGGLFDEGRMFFESMVRD 270 (512)
Q Consensus 217 ~~~~g~~~~A~~~~~~m~~~~~---p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 270 (512)
..+.|++++|.+.|+.+...-+ -....-..++.++.+.+++++|...+++.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3445556666666665555433 12233444555555666666666666555543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.1 Score=46.87 Aligned_cols=91 Identities=21% Similarity=0.286 Sum_probs=54.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-------CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CCchHHH
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQM-------RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPH---DAGNYVI 348 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~ 348 (512)
.|+.-++.| +.|++.+|...|... ...|+...| |..++...|+++.|...|..+.+..|. -|..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 344444333 344566666655554 133444444 666777777777777777777765544 3455666
Q ss_pred HHHHHHhccChhHHHHHHHHHHhC
Q 043142 349 LSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 349 l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
|.....+.|+.++|..+++++.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666677777777777777776654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.58 E-value=1 Score=36.81 Aligned_cols=125 Identities=13% Similarity=0.112 Sum_probs=66.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccC
Q 043142 76 FPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIA 155 (512)
Q Consensus 76 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~ 155 (512)
...++..+...+.......+++.+++.+ ..+....|.++..|++.. .+.....+.. .++......++..|.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~----~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN----KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh----ccccCCHHHHHHHHHHcC
Confidence 4455666666666777777777777665 356667777777777653 2333444442 123344555666666666
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc-CCHHHHHHHHHhcCCCCchHHHHHHHHH
Q 043142 156 ALPQGRELHGFSWRHRFELNVKVKTALVDMYAKC-GLVKVARNLFEQLREKRVVSWNAMITGY 217 (512)
Q Consensus 156 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g~~~~A~~~~~~m~~~~~~~~~~li~~~ 217 (512)
-++++..++..+.. +...+..+.+. ++++.|.+.+.+- .+...|..++..+
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~ 135 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKAL 135 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 55555555544321 11222223333 5566666655542 2334555555444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.52 E-value=1.6 Score=38.63 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=57.4
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhCC-------CCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCCch
Q 043142 278 QHYTCMVDLLGHSGRLDEACDLIMQMR-------VKPDPG-VWGALLNSCKLHGHVKLAELALEKLIEL----EPHDAGN 345 (512)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~ 345 (512)
..+......|.+..++++|-..|.+-+ --|+.. .+-+.|-.+.-..|+..|++.++.--+. +|.+..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 344555566777777877766655441 123332 4555555666677899999999886654 3667778
Q ss_pred HHHHHHHHHhccChhHHHHHH
Q 043142 346 YVILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 346 ~~~l~~~~~~~g~~~~a~~~~ 366 (512)
...|+.+| ..|+.+++.++.
T Consensus 231 lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHH
Confidence 88888887 467777766654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.95 Score=35.80 Aligned_cols=85 Identities=16% Similarity=0.168 Sum_probs=58.3
Q ss_pred ccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 043142 289 HSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKL 368 (512)
Q Consensus 289 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (512)
.+|++......+-.++ .+.......+.....+|+-+.-.++++.+.+.+..+|....-+..+|.+.|+..++.+++.+
T Consensus 68 ~C~NlKrVi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp G-S-THHHHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcchHHHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3555555555555543 24445667788888999999999999999876667788999999999999999999999999
Q ss_pred HHhCCCc
Q 043142 369 MIDRGIK 375 (512)
Q Consensus 369 m~~~g~~ 375 (512)
.-++|++
T Consensus 146 ACekG~k 152 (161)
T PF09205_consen 146 ACEKGLK 152 (161)
T ss_dssp HHHTT-H
T ss_pred HHHhchH
Confidence 9999985
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.33 Score=46.06 Aligned_cols=95 Identities=14% Similarity=0.101 Sum_probs=75.8
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 043142 278 QHYTCMVDLLGHSGRLDEACDLIMQM-RVK-PDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYAR 355 (512)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 355 (512)
.++.-|.-.|.+.+++.+|+..-++. ... +|....-.=..++...|+++.|+..|+++++.+|.|-.+-..|+..-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45666777888999999998887766 333 4555555667889999999999999999999999998888888888777
Q ss_pred ccChhHH-HHHHHHHHhC
Q 043142 356 AANWEGV-AKLRKLMIDR 372 (512)
Q Consensus 356 ~g~~~~a-~~~~~~m~~~ 372 (512)
..+..+. .++|..|...
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7766655 7888888754
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.41 E-value=2.8 Score=40.59 Aligned_cols=355 Identities=13% Similarity=0.079 Sum_probs=176.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCCC-CchHHHHHHHHH--HhcCCchHHHHHHHHHHHC--CCCCC-----------
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQR-NLFLWNVLIRAY--AWNGPYEVAIELYYRLLEI--GLVPD----------- 72 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p~----------- 72 (512)
..+.++++|-.. +++..........+. .-..|-.+..++ -+.+.+.+|++.+..-... +-.|.
T Consensus 48 l~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~ 126 (549)
T PF07079_consen 48 LGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFS 126 (549)
T ss_pred HhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhh
Confidence 456677777643 444444444333221 123344444433 4678888888887766543 22221
Q ss_pred -cchHHHHHHHHhccCChHHHHHHHHHHHHhCCC----CChhHHHHHHHHHHhCC--------C-------hHHHHHHHH
Q 043142 73 -NFTFPFALKACSALSAIEEGRRIHEDVIRNKWE----TDVFVGAALIDMYAKCS--------C-------VVNARQVFD 132 (512)
Q Consensus 73 -~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g--------~-------~~~A~~~~~ 132 (512)
-.-=+..+..+...|++.+|+.++++++..=++ -+..+||.++-++++.= . ++.+.-...
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~k 206 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLK 206 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHH
Confidence 111133455677889999998888887765444 67788888776666531 1 122222222
Q ss_pred hhhhCC--------CChhHHHH--------------------------------------HHHHHhccCChHHHHHHHHH
Q 043142 133 KILERD--------PSEATLVT--------------------------------------VISASADIAALPQGRELHGF 166 (512)
Q Consensus 133 ~m~~~~--------pd~~t~~~--------------------------------------ll~~~~~~~~~~~a~~~~~~ 166 (512)
+|...+ |...-+.. +...... +.+.+..+-+.
T Consensus 207 ki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ 284 (549)
T PF07079_consen 207 KIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEA 284 (549)
T ss_pred HHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHH
Confidence 222221 11111111 1111111 33333333322
Q ss_pred HHHcCCCC----chHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCc-------hHHHHHHHHHHH----cCChHHHHHH
Q 043142 167 SWRHRFEL----NVKVKTALVDMYAKCGLVKVARNLFEQLR--EKRV-------VSWNAMITGYAM----HGHSTKALDL 229 (512)
Q Consensus 167 ~~~~g~~~----~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~-------~~~~~li~~~~~----~g~~~~A~~~ 229 (512)
+....+.+ =..++..++....+.++...|.+.+.-+. +|+. .+-.++-+..+. .-+..+=+.+
T Consensus 285 ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~l 364 (549)
T PF07079_consen 285 IASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNL 364 (549)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 22221100 12234445555555666666665555433 2221 011111111221 1122233444
Q ss_pred HHHhHHCCCCCHHHHHHH---HHHHhcCCC-HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHH----Hhcc---CC---hH
Q 043142 230 FEKMKDEVQPDHITFVGV---LSACSRGGL-FDEGRMFFESMVRDYHIDP-SVQHYTCMVDL----LGHS---GR---LD 294 (512)
Q Consensus 230 ~~~m~~~~~p~~~t~~~l---l~a~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~----~~~~---g~---~~ 294 (512)
+++.....+......--| ..-+-+.|. -+.|..+++.+. .+.| |..+-|..... |.++ .. +-
T Consensus 365 we~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il---~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLl 441 (549)
T PF07079_consen 365 WEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL---QFTNYDIECENIVFLFVKQAYKQALSMHAIPRLL 441 (549)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 444443333111111112 222344454 677888888776 3455 44433333221 2111 11 12
Q ss_pred HHHHHHHhCCCCCCH----hHHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 043142 295 EACDLIMQMRVKPDP----GVWGALLNS--CKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKL 368 (512)
Q Consensus 295 ~A~~~~~~m~~~p~~----~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (512)
+-..++++.++.|-. ..-|.|..| +..+|++.++.-.-.-+.+..| ++.+|..++-......++++|..++..
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 223344555554432 244555544 5678999999888888888888 888999999999999999999999987
Q ss_pred HH
Q 043142 369 MI 370 (512)
Q Consensus 369 m~ 370 (512)
+.
T Consensus 521 LP 522 (549)
T PF07079_consen 521 LP 522 (549)
T ss_pred CC
Confidence 63
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.35 E-value=3.5 Score=41.39 Aligned_cols=181 Identities=16% Similarity=0.161 Sum_probs=123.4
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHH-
Q 043142 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLREKR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLS- 249 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~- 249 (512)
++..+|..-++.-.+.|+.+.+.-.|++..-+- ...|--.+.-....|+.+-|-.++....+-..|+....-.+-.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 345678888888889999999999999876553 2445555555555588888887777665544433332222222
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHH---HHHHhC-CCCCCHhHHHHHHHH-----H
Q 043142 250 ACSRGGLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRLDEAC---DLIMQM-RVKPDPGVWGALLNS-----C 319 (512)
Q Consensus 250 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~~-----~ 319 (512)
-+-..|+++.|..+++.+.+++ |+ +..-..-+....+.|..+.+. .++... +.+-+..+...+.-- +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 3445789999999999997653 64 344445566778888888887 444443 222233333333322 3
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc
Q 043142 320 KLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAA 357 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 357 (512)
...++.+.|..++.++.+..|++...|..+++.....+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 45688999999999999999999999999998877665
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.41 Score=47.42 Aligned_cols=153 Identities=10% Similarity=-0.005 Sum_probs=93.1
Q ss_pred ccCChHHHHHHHc--cCC-CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHH
Q 043142 19 ACDCLHNAHQLFD--RIP-QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRI 95 (512)
Q Consensus 19 ~~g~~~~A~~~f~--~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 95 (512)
-.|+++++.+... ++. .-...-.+.+++-+-+.|.++.|+++-..-. .-.....+.|+++.|.++
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHH
Confidence 4677888544433 111 1123457788888888898888888754321 123345567888888776
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc
Q 043142 96 HEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELN 175 (512)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 175 (512)
-.. .++...|..|.+...+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++-......|
T Consensus 341 a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~~~---- 403 (443)
T PF04053_consen 341 AKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEERG---- 403 (443)
T ss_dssp CCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHHcc----
Confidence 543 34677899999999999999999998888643 4556666667777777777766666655
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 043142 176 VKVKTALVDMYAKCGLVKVARNLFEQL 202 (512)
Q Consensus 176 ~~~~~~li~~y~~~g~~~~A~~~~~~m 202 (512)
-+|....++.-.|++++..+++.+.
T Consensus 404 --~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 --DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred --CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2444455555567777776666443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.25 Score=38.85 Aligned_cols=89 Identities=21% Similarity=0.233 Sum_probs=67.0
Q ss_pred HHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC---CchHHHHHHHHHhccCh
Q 043142 286 LLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELE-PHD---AGNYVILSNIYARAANW 359 (512)
Q Consensus 286 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~~ 359 (512)
+++..|+++.|++.|.+. .+-| ....||.-..+++-+|+.++|..-+++++++. |.. ..+|..-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 567788888888888766 3333 45578888888888888888888888888865 332 23566677778888888
Q ss_pred hHHHHHHHHHHhCCC
Q 043142 360 EGVAKLRKLMIDRGI 374 (512)
Q Consensus 360 ~~a~~~~~~m~~~g~ 374 (512)
+.|+.=|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888888877764
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.97 Score=44.06 Aligned_cols=155 Identities=13% Similarity=0.128 Sum_probs=95.5
Q ss_pred hHH--HHHHHHHHHcC-----ChHHHHHHHHHhHHCCC--CC-HHHHHHHHHHHhc---------CCCHHHHHHHHHHHH
Q 043142 208 VSW--NAMITGYAMHG-----HSTKALDLFEKMKDEVQ--PD-HITFVGVLSACSR---------GGLFDEGRMFFESMV 268 (512)
Q Consensus 208 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~~~~--p~-~~t~~~ll~a~~~---------~g~~~~a~~~~~~~~ 268 (512)
..| ...+.+..... ..+.|+.+|.+...... |+ ...|..+..++.. .....+|.++-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567 66666655421 24578888998873322 33 4444444333321 233455666666665
Q ss_pred HhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 043142 269 RDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGN 345 (512)
Q Consensus 269 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 345 (512)
.+.| |......+..++.-.|+++.|..+|++. .+.||.. +|....-.+.-.|+.++|.+.+++.++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3455 6667777777777777888888888887 4667654 66555566667888888888888888888864332
Q ss_pred --HHHHHHHHHhccChhHHHHHH
Q 043142 346 --YVILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 346 --~~~l~~~~~~~g~~~~a~~~~ 366 (512)
....++.|...+ .++|.+++
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHH
Confidence 223344555443 44555554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.28 Score=47.62 Aligned_cols=66 Identities=14% Similarity=-0.003 Sum_probs=47.5
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh----HHHHHHHHHhccCChHHHHHHHHHHHHc
Q 043142 105 ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA----TLVTVISASADIAALPQGRELHGFSWRH 170 (512)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 170 (512)
+.+...++.+..+|.+.|++++|+..|++..+.+|+.. +|..+..+|...|+.++|.+.++.+++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34556677777777777888888888877777777643 4677777777777777777777777664
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.42 Score=39.63 Aligned_cols=81 Identities=15% Similarity=-0.006 Sum_probs=33.5
Q ss_pred hcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 043142 188 KCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFF 264 (512)
Q Consensus 188 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 264 (512)
..|++++|..+|.-+.- .+..-|..|...+-..+++++|+..|...-...+-|+..+--...++...|+.+.|+..|
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCF 128 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHH
Confidence 34455555544444332 122333444444444444444444444433332222222233334444444444444444
Q ss_pred HHHH
Q 043142 265 ESMV 268 (512)
Q Consensus 265 ~~~~ 268 (512)
...+
T Consensus 129 ~~a~ 132 (165)
T PRK15331 129 ELVN 132 (165)
T ss_pred HHHH
Confidence 4443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.12 E-value=2.6 Score=38.53 Aligned_cols=141 Identities=14% Similarity=0.127 Sum_probs=78.3
Q ss_pred HHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHH
Q 043142 216 GYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDE 295 (512)
Q Consensus 216 ~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 295 (512)
.....|+..+|..+|+...+..+-+......+..++...|+.+.|..++..+-.+.. .........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcCCC
Confidence 445667777777777777666554444555666777777777777777776532210 0111111223444555555554
Q ss_pred HHHHHHhCCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHhcc
Q 043142 296 ACDLIMQMRVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELE--PHDAGNYVILSNIYARAA 357 (512)
Q Consensus 296 A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g 357 (512)
...+-++..-.| |...--.+...+...|+.+.|.+.+-.+++.+ -.+...-..|+..+.--|
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444443345 33344555666666777777766666665543 334455556666665555
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.10 E-value=2 Score=38.41 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHHCCC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCh
Q 043142 210 WNAMITGYAMHGHSTKALDLFEKMKDEVQ---PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSV 277 (512)
Q Consensus 210 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~---p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 277 (512)
|-.=+..-.+.|++++|.+.|+.+....+ -...+...++.++-+.+++++|....++.++.++-.||+
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 33334445677888888888888887765 234566667778888888888888888888777666654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.97 E-value=1.6 Score=35.52 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=9.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhc
Q 043142 182 LVDMYAKCGLVKVARNLFEQL 202 (512)
Q Consensus 182 li~~y~~~g~~~~A~~~~~~m 202 (512)
++..+.+.+........++.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~ 33 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESA 33 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHH
Confidence 334444444444444444443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.96 E-value=2.9 Score=38.25 Aligned_cols=120 Identities=15% Similarity=0.092 Sum_probs=66.4
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh--HHHHHHHHHhccCChHH
Q 043142 82 ACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA--TLVTVISASADIAALPQ 159 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~--t~~~ll~~~~~~~~~~~ 159 (512)
.....+++..|..++....... +-+...--.|..+|...|+.+.|..++..++....+.. ....-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3456677777777777777664 33445556677778888888888888887765543221 11122233333333333
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 043142 160 GRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE 204 (512)
Q Consensus 160 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 204 (512)
...+.+..-.. +.|...-..|...|...|+.+.|.+.+-.+.+
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333221 22455555566666666666666655554443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.95 E-value=2.2 Score=37.04 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 043142 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLL 287 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 287 (512)
..||-+.--+...|+++.|.+.|+...+..+....+...=.-++--.|++..|.+=+...-+.-.-+|-...|--++.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-- 177 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-- 177 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH--
Confidence 455555555666666666666666665555533333222222334456666665544444332112222222222221
Q ss_pred hccCChHHHHHH-HHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHhccCh
Q 043142 288 GHSGRLDEACDL-IMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHD-------AGNYVILSNIYARAANW 359 (512)
Q Consensus 288 ~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~ 359 (512)
+.-+..+|..- .++.. ..|..-|..-|-.+.--.-.+ +.+++++.....++ ..+|..|..-|...|+.
T Consensus 178 -~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~ 253 (297)
T COG4785 178 -QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDL 253 (297)
T ss_pred -hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccH
Confidence 22234444332 23332 334445554444432211111 22333333322222 45888899999999999
Q ss_pred hHHHHHHHHHHhCCC
Q 043142 360 EGVAKLRKLMIDRGI 374 (512)
Q Consensus 360 ~~a~~~~~~m~~~g~ 374 (512)
++|..+|+.....++
T Consensus 254 ~~A~~LfKLaiannV 268 (297)
T COG4785 254 DEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHhH
Confidence 999999998776554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.47 Score=46.98 Aligned_cols=131 Identities=21% Similarity=0.292 Sum_probs=70.0
Q ss_pred HHcCChHHHHHHHHHhH-HCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHH
Q 043142 218 AMHGHSTKALDLFEKMK-DEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEA 296 (512)
Q Consensus 218 ~~~g~~~~A~~~~~~m~-~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 296 (512)
.-.++++++.++...-. -..+| ..-...++.-+.+.|..+.|+++-..-.. -.+...++|+++.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHHH
Confidence 34566666555554111 11113 33456666666677777777665433221 23445667777777
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 297 CDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 297 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
.++.++.. +...|..|......+|+++.|++.|++. .-+..|+-.|.-.|+.+.-.++.+....+|
T Consensus 338 ~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 338 LEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 76665543 5567777777777777777777777765 244556666667777666666665555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.86 E-value=10 Score=44.63 Aligned_cols=310 Identities=15% Similarity=0.112 Sum_probs=175.8
Q ss_pred HHHHHHHhcCCchHHHHHHHHH----HHCCCCCCcchHHHHH-HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043142 43 VLIRAYAWNGPYEVAIELYYRL----LEIGLVPDNFTFPFAL-KACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDM 117 (512)
Q Consensus 43 ~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 117 (512)
.+..+-.+.+.+..|+..++.- .+.. -...+..++ ..|+..++++....+..... .+..+++ .|-.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~---~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~-qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE---TEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQ-QILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH---HHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHH-HHHH
Confidence 4444556778888999998883 2211 112344444 48999999998887766421 2333333 4445
Q ss_pred HHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHH-HHHHHHHhcCCHHHH
Q 043142 118 YAKCSCVVNARQVFDKILERDPS-EATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKT-ALVDMYAKCGLVKVA 195 (512)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A 195 (512)
....|++..|...|+++.+.+|+ ..+++.++......+.++...-..+...... .+....++ .=+.+--+.++++..
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhh
Confidence 67789999999999999999987 5678888887777777777666544444332 23333333 334455677788777
Q ss_pred HHHHHhcCCCCchHHHHH--HHHHHHcCC--hHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHH--------
Q 043142 196 RNLFEQLREKRVVSWNAM--ITGYAMHGH--STKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMF-------- 263 (512)
Q Consensus 196 ~~~~~~m~~~~~~~~~~l--i~~~~~~g~--~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~-------- 263 (512)
..... .++..+|.+. +..+.+..+ .-.-.+..+.+++.-+ .=+.+|+..|.+..+..+
T Consensus 1538 e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i-------~~lsa~s~~~Sy~~~Y~~~~kLH~l~ 1607 (2382)
T KOG0890|consen 1538 ESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVI-------ENLSACSIEGSYVRSYEILMKLHLLL 1607 (2382)
T ss_pred hhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhh-------hhHHHhhccchHHHHHHHHHHHHHHH
Confidence 76665 5566666655 222222221 1112233333332211 011122222221111111
Q ss_pred --HHHHHHhcCCCCChhH------HHHHHHHHhccCChHHHHHHHHhC----CCCC----C-HhHHHHHHHHHHHcCCHH
Q 043142 264 --FESMVRDYHIDPSVQH------YTCMVDLLGHSGRLDEACDLIMQM----RVKP----D-PGVWGALLNSCKLHGHVK 326 (512)
Q Consensus 264 --~~~~~~~~~~~p~~~~------~~~li~~~~~~g~~~~A~~~~~~m----~~~p----~-~~~~~~ll~~~~~~g~~~ 326 (512)
-.......++.++..+ |-.-+..-....+..+-+--+++. ..+| . ..+|-...+..+..|.++
T Consensus 1608 el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1608 ELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred HHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 1111111233332211 111111111111122211112211 1122 2 338999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 327 LAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 327 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
.|....-.+.+..++ ..+.-.+......|+...|+.+++...+...
T Consensus 1688 ~A~nall~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1688 RAQNALLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 999999888887753 5788888999999999999999999886544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.86 Score=36.88 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=34.5
Q ss_pred HhccCChHHHHHHHHhC----CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 287 LGHSGRLDEACDLIMQM----RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 287 ~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
..+.|++++|.+.|+.+ |..| ....--.|+.++.+.+++++|...+++.+++.|.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 34556666666666665 2222 122445566667777777777777777777776644
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.57 Score=43.66 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=23.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CCC----CchHHHHHHHHHhccChhHHHHHHH
Q 043142 317 NSCKLHGHVKLAELALEKLIELE--PHD----AGNYVILSNIYARAANWEGVAKLRK 367 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (512)
-+++..|....|.+..+++.++. ..| ......+.++|-..|+.+.|..-++
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 34455555555555555554431 111 2223345555555555555544443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.63 E-value=4.7 Score=39.14 Aligned_cols=334 Identities=12% Similarity=0.088 Sum_probs=187.9
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHccCCC--------CCchHHHHHHHHHHhc--------CCchHHHHHH-------
Q 043142 5 FHPVLATKLVHLYSACDCLHNAHQLFDRIPQ--------RNLFLWNVLIRAYAWN--------GPYEVAIELY------- 61 (512)
Q Consensus 5 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~--------g~~~~A~~~~------- 61 (512)
+|...-+..+..+.+.|++.+++.++++|.+ -|+.+||.++-.+.+. ...+-+.+.|
T Consensus 126 ~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~ 205 (549)
T PF07079_consen 126 SDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYL 205 (549)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHH
Confidence 3455667788888999999999999888753 3788888755444332 1122222222
Q ss_pred HHHHHC------CCCCCcchHHHHHHHHhcc--CChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCChHHHHHHHH
Q 043142 62 YRLLEI------GLVPDNFTFPFALKACSAL--SAIEEGRRIHEDVIRNKWETD-VFVGAALIDMYAKCSCVVNARQVFD 132 (512)
Q Consensus 62 ~~m~~~------g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 132 (512)
.+|... .+.|....+..++.-..-. ..+.--.+++..-...-+.|+ ..+...|+.-+.+ +.+++..+.+
T Consensus 206 kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce 283 (549)
T PF07079_consen 206 KKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCE 283 (549)
T ss_pred HHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHH
Confidence 222211 2334443344444332221 112222333333333333444 3344455555555 5555555555
Q ss_pred hhhhCC------CChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHH-------HHHHHHHh----cCCHHHH
Q 043142 133 KILERD------PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKT-------ALVDMYAK----CGLVKVA 195 (512)
Q Consensus 133 ~m~~~~------pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-------~li~~y~~----~g~~~~A 195 (512)
.+.... --..+|..++..+.+.++...|.+.+..+.-. .|+..+.. +|.++.+. .-++.+=
T Consensus 284 ~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~y 361 (549)
T PF07079_consen 284 AIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDY 361 (549)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHH
Confidence 443322 12357889999999999999999998877654 34433322 22333321 1122333
Q ss_pred HHHHHhcCCCCc-----hHHHH-HHHHHHHcCC-hHHHHHHHHHhHHCCCCCHHHHHHHH----HHHhc---CCCHHHHH
Q 043142 196 RNLFEQLREKRV-----VSWNA-MITGYAMHGH-STKALDLFEKMKDEVQPDHITFVGVL----SACSR---GGLFDEGR 261 (512)
Q Consensus 196 ~~~~~~m~~~~~-----~~~~~-li~~~~~~g~-~~~A~~~~~~m~~~~~p~~~t~~~ll----~a~~~---~g~~~~a~ 261 (512)
..+++.....|+ +.|-. -..-+-+.|. -++|+++++...+--.-|...-+.+. .+|.+ ...+.+-.
T Consensus 362 L~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLl 441 (549)
T PF07079_consen 362 LNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLL 441 (549)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 445555555553 23322 2234566666 78999999988765444444333332 23322 23344444
Q ss_pred HHHHHHHHhcCCCC----ChhHHHHHHHH--HhccCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043142 262 MFFESMVRDYHIDP----SVQHYTCMVDL--LGHSGRLDEACDLIMQM-RVKPDPGVWGALLNSCKLHGHVKLAELALEK 334 (512)
Q Consensus 262 ~~~~~~~~~~~~~p----~~~~~~~li~~--~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 334 (512)
.+-+-+ ++-|+.| +...-|.|.++ +...|++.++.-.-.-. .+.|++.+|..+.-+...+.++++|-.++..
T Consensus 442 kLe~fi-~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 442 KLEDFI-TEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHH-HhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 444434 5668888 34556666554 45678888876543333 5789999999999999999999999998876
Q ss_pred HHhcCCCCCchHH
Q 043142 335 LIELEPHDAGNYV 347 (512)
Q Consensus 335 ~~~~~p~~~~~~~ 347 (512)
+ |++..++.
T Consensus 521 L----P~n~~~~d 529 (549)
T PF07079_consen 521 L----PPNERMRD 529 (549)
T ss_pred C----CCchhhHH
Confidence 5 44444444
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.35 Score=43.44 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=76.4
Q ss_pred HHHHHHhcC--CCCchHHHHHHHHHHHc-----CChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCC-----------
Q 043142 195 ARNLFEQLR--EKRVVSWNAMITGYAMH-----GHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGG----------- 255 (512)
Q Consensus 195 A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g----------- 255 (512)
.++.|.... ++|-.+|.+++..+... +..+=....++.|.+-|+ -|..+|..|+..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666666 67778888888877654 456666677888889999 99999999998775532
Q ss_pred -----CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChH
Q 043142 256 -----LFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLD 294 (512)
Q Consensus 256 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 294 (512)
+-+-++.++++| +.+|+.||-.+-..|+.++++.+-.-
T Consensus 133 ~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccH
Confidence 224478899999 67899999999999999999888643
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.47 Score=42.69 Aligned_cols=91 Identities=18% Similarity=0.254 Sum_probs=46.7
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC----CCCCCH-hHHHHHHHHHHHcCCHH
Q 043142 253 RGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM----RVKPDP-GVWGALLNSCKLHGHVK 326 (512)
Q Consensus 253 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~-~~~~~ll~~~~~~g~~~ 326 (512)
+.|++..|..-|...++.+.-.+ ....+--|...+...|++++|..+|..+ |-.|-. ...--|.......|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 34455555555555554432111 2233344555555566666655555444 212211 24444555556666666
Q ss_pred HHHHHHHHHHhcCCCCC
Q 043142 327 LAELALEKLIELEPHDA 343 (512)
Q Consensus 327 ~A~~~~~~~~~~~p~~~ 343 (512)
+|...|+++.+..|..+
T Consensus 233 ~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 233 EACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHHCCCCH
Confidence 66666666666666544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.52 E-value=3.4 Score=37.03 Aligned_cols=178 Identities=16% Similarity=0.113 Sum_probs=110.3
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc------hHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCHHHHH
Q 043142 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV------VSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFV 245 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~ 245 (512)
|-...|+.- ..-.+.|++++|.+.|+.+..+-+ .+--.++-++-+.+++++|+..+++.....+ ||. .|.
T Consensus 33 p~~~LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~ 110 (254)
T COG4105 33 PASELYNEG-LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYA 110 (254)
T ss_pred CHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHH
Confidence 334455543 345678999999999999985432 3445566778899999999999999988776 443 344
Q ss_pred HHHHHHhc---C----CC---HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhH-H-H
Q 043142 246 GVLSACSR---G----GL---FDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGV-W-G 313 (512)
Q Consensus 246 ~ll~a~~~---~----g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~-~-~ 313 (512)
.-|.+.+. . .+ ..+|..-|+.++.++ |+. .-...|..-+..+. |... + .
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~---d~LA~~Em 171 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLN---DALAGHEM 171 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHH---HHHHHHHH
Confidence 44444432 1 12 223334444444332 321 11112221111110 1110 1 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 314 ALLNSCKLHGHVKLAELALEKLIELEPHDA---GNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 314 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
.+..-|.+.|.+..|..-++++++.-|..+ ..+..+.++|...|..++|.+.-+-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 345568899999999999999998866544 35556788899999999999887776543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.51 E-value=2.1 Score=43.13 Aligned_cols=171 Identities=11% Similarity=-0.004 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC-C-------ChhHHHHHHHHHhc----cCChHH
Q 043142 92 GRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD-P-------SEATLVTVISASAD----IAALPQ 159 (512)
Q Consensus 92 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-p-------d~~t~~~ll~~~~~----~~~~~~ 159 (512)
+.-+|..++.. +||. ...++....=.||-+.+++.+.+..+.+ . -..+|..++..+.. ..+.+.
T Consensus 176 G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 44555555543 2333 3445555566677777777777655432 1 11234444444433 345677
Q ss_pred HHHHHHHHHHcCCCCchHHHH-HHHHHHHhcCCHHHHHHHHHhcCCC-------CchHHHHHHHHHHHcCChHHHHHHHH
Q 043142 160 GRELHGFSWRHRFELNVKVKT-ALVDMYAKCGLVKVARNLFEQLREK-------RVVSWNAMITGYAMHGHSTKALDLFE 231 (512)
Q Consensus 160 a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~ 231 (512)
+.+++..+.+. -|+...|. --...+...|++++|.+.|+..... ....+--+...+....++++|.+.|.
T Consensus 252 a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 88888877765 24443333 3356677788999999999875531 12334445566777889999999999
Q ss_pred HhHHCCCCCHHHHHHHHH-HHhcCCCH-------HHHHHHHHHHH
Q 043142 232 KMKDEVQPDHITFVGVLS-ACSRGGLF-------DEGRMFFESMV 268 (512)
Q Consensus 232 ~m~~~~~p~~~t~~~ll~-a~~~~g~~-------~~a~~~~~~~~ 268 (512)
++.+...-...+|.-+.. ++...++. ++|..+|.++.
T Consensus 330 ~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 330 RLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 998865544444444433 33456666 88888888774
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.43 E-value=2.5 Score=42.58 Aligned_cols=116 Identities=13% Similarity=0.080 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCChhHHHHH-HHHHhccCChHHHHHHHHhCC------CCCCHhHHHHHHHHHHHcCCHH
Q 043142 254 GGLFDEGRMFFESMVRDYHIDPSVQHYTCM-VDLLGHSGRLDEACDLIMQMR------VKPDPGVWGALLNSCKLHGHVK 326 (512)
Q Consensus 254 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~------~~p~~~~~~~ll~~~~~~g~~~ 326 (512)
....+.|.+++..+.++ -|+...|... ...+...|++++|++.|++.- .+.....+--+.-.+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 45667778888877654 4655444333 345666788888888887651 0112233444555577788999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHH-HHHhccCh-------hHHHHHHHHHHhC
Q 043142 327 LAELALEKLIELEPHDAGNYVILSN-IYARAANW-------EGVAKLRKLMIDR 372 (512)
Q Consensus 327 ~A~~~~~~~~~~~p~~~~~~~~l~~-~~~~~g~~-------~~a~~~~~~m~~~ 372 (512)
+|.+.|.++.+...-+...|..+.- .+...|+. ++|.++|.++.+.
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999999877666566665544 44677888 8888888877653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.093 Score=30.61 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 043142 310 GVWGALLNSCKLHGHVKLAELALEKLIELEPH 341 (512)
Q Consensus 310 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 341 (512)
.+|..+...+...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.33 Score=43.59 Aligned_cols=98 Identities=10% Similarity=0.067 Sum_probs=69.4
Q ss_pred HHHHHccCC--CCCchHHHHHHHHHHhc-----CCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC----------
Q 043142 26 AHQLFDRIP--QRNLFLWNVLIRAYAWN-----GPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSA---------- 88 (512)
Q Consensus 26 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------- 88 (512)
.++.|...+ ++|-.+|-+.+..+... +.++-....++.|.+.|+.-|..+|..||+.+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 445666666 57888888888777654 4555566667888888888888889888887654331
Q ss_pred ------hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043142 89 ------IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC 123 (512)
Q Consensus 89 ------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (512)
-+-+..++++|...|+-||-.+-..|++.+.+.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 23466777777777777777777777777766654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=1 Score=43.87 Aligned_cols=129 Identities=11% Similarity=0.053 Sum_probs=92.0
Q ss_pred HHHHHHHhcC-----CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhc---------cCChHHHHHHHHhC-CCC-C
Q 043142 245 VGVLSACSRG-----GLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGH---------SGRLDEACDLIMQM-RVK-P 307 (512)
Q Consensus 245 ~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~-p 307 (512)
...+.+..+. ...+.|..+|.+.+....++|+ ...|..+...+.. .....+|.++.++. ... -
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4455555442 2467788899998755566774 4455554443322 22344555665555 333 3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 308 DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
|......+..+....++++.|...|+++..++|+.+.+|........-.|+.++|.+.+++..+..
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 555666777777788889999999999999999999999999999999999999999998865543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.16 Score=29.49 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 56677778888888888888888888888764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.17 E-value=1.9 Score=34.21 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=29.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043142 144 LVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR 203 (512)
Q Consensus 144 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 203 (512)
+...+.+....|.-+.-.++...+.+.+ .+++...-.+..+|.+.|+..+|.+++.+.-
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3344455555566666666666655432 4455555566666666666666666655543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.37 Score=37.88 Aligned_cols=89 Identities=18% Similarity=0.177 Sum_probs=57.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC----CCCCCH--hHHHHHHHHHHHc
Q 043142 250 ACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM----RVKPDP--GVWGALLNSCKLH 322 (512)
Q Consensus 250 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~--~~~~~ll~~~~~~ 322 (512)
+.+..|+++.|++.|.+.+ .+-| ....||.-..++.-.|+.++|++-+++. +-+... ..|..-...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 4566777777777777765 3444 5667777777777777777777776665 211111 1333333446778
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 043142 323 GHVKLAELALEKLIELEPH 341 (512)
Q Consensus 323 g~~~~A~~~~~~~~~~~p~ 341 (512)
|+.+.|..-|+.+-+++.+
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 8888888888888777754
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.10 E-value=8.5 Score=40.02 Aligned_cols=67 Identities=15% Similarity=0.319 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcC
Q 043142 245 VGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHG 323 (512)
Q Consensus 245 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g 323 (512)
...+..|.+.|-+++-.-++.+| | .++.+|.-.--+-++.++|+++.++ +-|...|..||..+...-
T Consensus 638 ekA~eiC~q~~~~~E~VYlLgrm----G-----n~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 638 EKALEICSQKNFYEELVYLLGRM----G-----NAKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKP 704 (846)
T ss_pred HHHHHHHHhhCcHHHHHHHHHhh----c-----chHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCc
Confidence 34445555555555555555554 2 1333333334444566666666555 346777777777665543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.09 E-value=1.7 Score=40.30 Aligned_cols=112 Identities=13% Similarity=0.194 Sum_probs=54.0
Q ss_pred cCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHH--HH-HHH-HHHHhcCCCHHHHH
Q 043142 189 CGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHI--TF-VGV-LSACSRGGLFDEGR 261 (512)
Q Consensus 189 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~--t~-~~l-l~a~~~~g~~~~a~ 261 (512)
.|+.-+|-..++++.+ .|..+|+.-=.+|..+|+.+.-...++++...-.||.. +| ..+ .-++...|-+++|+
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 3455555444444442 24555555555666666666666666555433112221 11 111 12333456666666
Q ss_pred HHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 262 MFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 262 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
+.-++.. .+.| |.-.-.++...+.-.|+..++.++..+-
T Consensus 196 k~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 196 KQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 5555543 2333 3334444455555556666666655554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.90 E-value=4.1 Score=35.68 Aligned_cols=193 Identities=19% Similarity=0.165 Sum_probs=112.1
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHc-CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHH-HHHH
Q 043142 145 VTVISASADIAALPQGRELHGFSWRH-RFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR---VVSWNAMIT-GYAM 219 (512)
Q Consensus 145 ~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~-~~~~ 219 (512)
......+...+.+..+...+...... ........+..+...+...+++..+.+.+......+ ......... .+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYE 142 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence 33333344444444444444333321 223333444455555555666666666666654321 122222223 5677
Q ss_pred cCChHHHHHHHHHhHHCCCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCCh
Q 043142 220 HGHSTKALDLFEKMKDEVQP----DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP--SVQHYTCMVDLLGHSGRL 293 (512)
Q Consensus 220 ~g~~~~A~~~~~~m~~~~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~ 293 (512)
.|+.+.|...+.+... ..| ....+......+...++.+.+...+....+. .+ ....+..+...+...+.+
T Consensus 143 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 143 LGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred cCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHcccH
Confidence 7777777777777744 223 2233333333456677888888888877633 33 356677777778888888
Q ss_pred HHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 043142 294 DEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPH 341 (512)
Q Consensus 294 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 341 (512)
++|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8888887766 33444 344555555555667788899888888888875
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.22 Score=31.22 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh
Q 043142 110 VGAALIDMYAKCSCVVNARQVFDKILERDPSEA 142 (512)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~ 142 (512)
++..+...|.+.|++++|+++|+++.+.+|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 455666777777777777777777777766543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.28 E-value=8.5 Score=37.38 Aligned_cols=92 Identities=11% Similarity=0.145 Sum_probs=69.3
Q ss_pred HHHHHccCCC--CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 043142 26 AHQLFDRIPQ--RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNK 103 (512)
Q Consensus 26 A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 103 (512)
-+++=+++.+ .|+.+|-.||.-|..+|..++..+++++|..- .+--...|..-+++-....+++..+.+|.+.++..
T Consensus 28 ~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 28 ELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 3466677764 38899999999999999999999999999652 22223467777877777789999999999998875
Q ss_pred CCCChhHHHHHHHHHHh
Q 043142 104 WETDVFVGAALIDMYAK 120 (512)
Q Consensus 104 ~~~~~~~~~~li~~~~~ 120 (512)
+ +...|...+.---+
T Consensus 107 l--~ldLW~lYl~YIRr 121 (660)
T COG5107 107 L--NLDLWMLYLEYIRR 121 (660)
T ss_pred c--cHhHHHHHHHHHHh
Confidence 4 46666666653333
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.28 E-value=1.9 Score=40.00 Aligned_cols=145 Identities=9% Similarity=0.100 Sum_probs=76.6
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhC-CCChhHHHHH--HH--HHhccCChHHH
Q 043142 86 LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILER-DPSEATLVTV--IS--ASADIAALPQG 160 (512)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~pd~~t~~~l--l~--~~~~~~~~~~a 160 (512)
.|+..+|-..++++++. +|.|...++--=++|.-.|+.+.-...++++... +||...|+-+ +- ++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 45555555556665544 3556666666666666666666666666666544 5555333322 11 12345666666
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C-----chHHHHHHHHHHHcCChHHHHHHHHH
Q 043142 161 RELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK--R-----VVSWNAMITGYAMHGHSTKALDLFEK 232 (512)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~-----~~~~~~li~~~~~~g~~~~A~~~~~~ 232 (512)
++.-++..+.+ +.|.-...++...+--.|+..++.+...+-... + ...|--..-.+...+.++.|+++|+.
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 66666555543 334445555566666666666666655443321 0 01111112223444667777777765
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.16 E-value=4.3 Score=33.63 Aligned_cols=69 Identities=7% Similarity=-0.035 Sum_probs=39.2
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhc
Q 043142 83 CSALSAIEEGRRIHEDVIRNKWETD-VFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASAD 153 (512)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~ 153 (512)
-...++.+.++.++.-+.-.. |. ..+-..-...+.+.|++++|+.+|+++.+..|....-..|+..|..
T Consensus 20 al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 345556666666666655442 22 2222223344667778888888888777666555444455555543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.11 E-value=8.2 Score=40.40 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=33.3
Q ss_pred HHHHHHHccCChHHHHHHHccCC---CCCchHHHHHHHHHHhcCC-------chHHHHHHHHHHHC
Q 043142 12 KLVHLYSACDCLHNAHQLFDRIP---QRNLFLWNVLIRAYAWNGP-------YEVAIELYYRLLEI 67 (512)
Q Consensus 12 ~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~ 67 (512)
++|-.+.|+|++++|.++..... ++....+-..+..|+...+ -++...-|++..+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 46778889999999999993322 2344556666777765422 12444455555543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.90 E-value=9.2 Score=36.75 Aligned_cols=146 Identities=8% Similarity=-0.024 Sum_probs=77.4
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC--ChhH
Q 043142 206 RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-P---DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP--SVQH 279 (512)
Q Consensus 206 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~ 279 (512)
...+|..++..+.+.|+++.|...+.++..... + ++.....-+...-..|+-.+|...++...+. .+.. +...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 346788888888888888888888888876542 1 3333444455566678888888888777652 1111 1111
Q ss_pred HHHHHHHHhccCChHHHHHH-HHhCCCCCCHhHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 043142 280 YTCMVDLLGHSGRLDEACDL-IMQMRVKPDPGVWGALLNSCKLH------GHVKLAELALEKLIELEPHDAGNYVILSNI 352 (512)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 352 (512)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+++.+..|.....|..+...
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 00000000 00000000011222222223333 778888999999999988877777766665
Q ss_pred HH
Q 043142 353 YA 354 (512)
Q Consensus 353 ~~ 354 (512)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 54
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.86 E-value=1.6 Score=36.41 Aligned_cols=117 Identities=13% Similarity=0.013 Sum_probs=47.9
Q ss_pred ccCChHHHHHHHccCCCCCchHHHHHH-----HHHHhcCCchHHHHHHHHHHHCCCCCCcc-hHHHHHH--HHhccCChH
Q 043142 19 ACDCLHNAHQLFDRIPQRNLFLWNVLI-----RAYAWNGPYEVAIELYYRLLEIGLVPDNF-TFPFALK--ACSALSAIE 90 (512)
Q Consensus 19 ~~g~~~~A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~--~~~~~~~~~ 90 (512)
+.++.++|+..|..+.+.+--+|-.|. ....+.|+...|...|++.-.....|-.. -...|=. .+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 344555555555555443333333222 22344455555555555554332222221 0111111 123344444
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhh
Q 043142 91 EGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKIL 135 (512)
Q Consensus 91 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 135 (512)
....-.+-+-..+-+.-...-.+|.-+-.|.|++.+|.+.|..+.
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 444443333322222223333444444445555555555555543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.68 E-value=18 Score=39.63 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=22.3
Q ss_pred CCChhHHHHHHHHHHhCC--ChHHHHHHHHhhhh
Q 043142 105 ETDVFVGAALIDMYAKCS--CVVNARQVFDKILE 136 (512)
Q Consensus 105 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 136 (512)
.|+ ...-.+|..|.+.+ .+++|+....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 455 45567888888888 67888877777664
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.73 Score=42.12 Aligned_cols=62 Identities=21% Similarity=0.254 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 310 GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 310 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
.++..++..+...|+.+.+...++++.+.+|-+...|..++.+|.+.|+...|+..++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 35566777777888888888888888888888888888888888888888888888887765
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=9.1 Score=35.52 Aligned_cols=240 Identities=15% Similarity=0.031 Sum_probs=137.5
Q ss_pred HHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCh----HHHHHHHHHHHHhCC
Q 043142 29 LFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAI----EEGRRIHEDVIRNKW 104 (512)
Q Consensus 29 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~----~~a~~~~~~~~~~g~ 104 (512)
+++.+..+|.......+.++...|. .++...+..+... +|...=...+.+++..|+. +++...+..+...
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~-- 101 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE-- 101 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--
Confidence 3444456677666667777777764 3455555555442 3444455556667777753 3455666555333
Q ss_pred CCChhHHHHHHHHHHhCCCh-----HHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHH
Q 043142 105 ETDVFVGAALIDMYAKCSCV-----VNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVK 179 (512)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 179 (512)
.++..+-...+.++...+.- ..+...+.... .+++..+-...+.++.+.++. .+...+-.+.+ .++..+-
T Consensus 102 D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR 176 (280)
T PRK09687 102 DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITA-FDKSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVR 176 (280)
T ss_pred CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHh-hCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHH
Confidence 46666766666666655421 22333333322 234555556667777777763 45555544444 3445566
Q ss_pred HHHHHHHHhcC-CHHHHHHHHH-hcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCH
Q 043142 180 TALVDMYAKCG-LVKVARNLFE-QLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLF 257 (512)
Q Consensus 180 ~~li~~y~~~g-~~~~A~~~~~-~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~ 257 (512)
...+.++.+.+ +...+...+. .+..++...-...+.++.+.|.. .|+..+-+..+.+. .....+.++...|..
T Consensus 177 ~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~----~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 177 NWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT----VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc----hHHHHHHHHHhcCCH
Confidence 66666666543 1334444443 34456666667777778877774 56666655554422 234677788888885
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 043142 258 DEGRMFFESMVRDYHIDPSVQHYTCMVDLLG 288 (512)
Q Consensus 258 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 288 (512)
+|...+..+.+. .||..+-...+.++.
T Consensus 252 -~a~p~L~~l~~~---~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYK---FDDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhh---CCChhHHHHHHHHHh
Confidence 677777777643 456666666665554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.34 E-value=9.4 Score=35.45 Aligned_cols=161 Identities=14% Similarity=0.113 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHcCChH---HHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CCCChhHHHHH
Q 043142 208 VSWNAMITGYAMHGHST---KALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYH-IDPSVQHYTCM 283 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~l 283 (512)
.+...++.+|...+..+ +|.++++.+....+-....+..-+..+.+.++.+++.+.+.+|+.... .+.+.......
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 46677888888877654 566677777555442345555566777778999999999999986533 22233333333
Q ss_pred HHHHhccCChHHHHHHHHhC---CCCCCHhHHH--HHHHHH---HHcCC------HHHHHHHHHHHHhc--CCCCCchHH
Q 043142 284 VDLLGHSGRLDEACDLIMQM---RVKPDPGVWG--ALLNSC---KLHGH------VKLAELALEKLIEL--EPHDAGNYV 347 (512)
Q Consensus 284 i~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~--~ll~~~---~~~g~------~~~A~~~~~~~~~~--~p~~~~~~~ 347 (512)
+.-+..... ..|...+..+ ...|....|. .++... .+.++ ++....++..+.+. .|-++.+-.
T Consensus 165 i~~l~~~~~-~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 165 IKQLAEKSP-ELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHhhCc-HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 333344333 3444444433 2333332121 111111 11111 44444455533332 233333322
Q ss_pred ---HH----HHHHHhccChhHHHHHHHHH
Q 043142 348 ---IL----SNIYARAANWEGVAKLRKLM 369 (512)
Q Consensus 348 ---~l----~~~~~~~g~~~~a~~~~~~m 369 (512)
.| +..+.+.+++++|.+.++.-
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 22 34466889999999988753
|
It is also involved in sporulation []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.21 E-value=5.4 Score=33.41 Aligned_cols=129 Identities=14% Similarity=0.050 Sum_probs=74.0
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHH---HHHH-
Q 043142 75 TFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFV-GAALIDMYAKCSCVVNARQVFDKILERDPSEATLV---TVIS- 149 (512)
Q Consensus 75 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~---~ll~- 149 (512)
+|...++ +++.+..++|..-|..+.+.|...-+.. .--........|+-..|...|+++-...|-+.... -|=.
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3444443 3455677788888888887775432221 11223345677888888888888766554333221 1111
Q ss_pred -HHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 043142 150 -ASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE 204 (512)
Q Consensus 150 -~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 204 (512)
.+...|.++......+.+-..+-+.-...-.+|.-+-.+.|++.+|.+.|..+..
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2245566666555555554444444445555666666677777777777766543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.94 E-value=2.2 Score=36.41 Aligned_cols=96 Identities=16% Similarity=0.061 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc--chHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-C------hh
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN--FTFPFALKACSALSAIEEGRRIHEDVIRNKWET-D------VF 109 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~------~~ 109 (512)
..+..+...|.+.|+.++|++.|.++......|.. ..+-.+++.+...+++..+.....++...--.+ | ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46888899999999999999999999887555543 346777888888899998888877665432121 1 12
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhhhh
Q 043142 110 VGAALIDMYAKCSCVVNARQVFDKILE 136 (512)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 136 (512)
+|..|. +...+++..|-+.|-....
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccCc
Confidence 333333 2346889888888877643
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.83 E-value=4.8 Score=37.63 Aligned_cols=126 Identities=16% Similarity=0.217 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHhc--cC----ChHHHHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCh-
Q 043142 55 EVAIELYYRLLEIGLVPDNFTFPFALKACSA--LS----AIEEGRRIHEDVIRNKW---ETDVFVGAALIDMYAKCSCV- 124 (512)
Q Consensus 55 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~- 124 (512)
++.+.+++.|.+.|.+-+.++|.+..-.... .. ....+..+|+.|.+... .++..++.+|+.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4556778888888888777776664433332 22 24567788888887642 3445555555543 33332
Q ss_pred ---HHHHHHHHhhhhCC---CCh-hHHHHHHHHHhccCC--hHHHHHHHHHHHHcCCCCchHHHHHH
Q 043142 125 ---VNARQVFDKILERD---PSE-ATLVTVISASADIAA--LPQGRELHGFSWRHRFELNVKVKTAL 182 (512)
Q Consensus 125 ---~~A~~~~~~m~~~~---pd~-~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l 182 (512)
+.+...|+.+.+.+ -|. ...+.++..+..... ...+..+++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 44555666665533 122 233333333322222 33556666677777766665555544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.81 E-value=11 Score=35.04 Aligned_cols=19 Identities=11% Similarity=-0.226 Sum_probs=12.1
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 043142 318 SCKLHGHVKLAELALEKLI 336 (512)
Q Consensus 318 ~~~~~g~~~~A~~~~~~~~ 336 (512)
.+.+.++++.|.+.|+-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3456677777777776543
|
It is also involved in sporulation []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.78 E-value=5.4 Score=39.32 Aligned_cols=74 Identities=15% Similarity=0.071 Sum_probs=57.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCceee
Q 043142 309 PGVWGALLNSCKLHGHVKLAELALEKLIELEPH--DAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSW 382 (512)
Q Consensus 309 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 382 (512)
..+=..|..++.+.|+.++|.+.++++++..|. +......|++.+...+++.++..++.+-.+-..+++..++|
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~Y 334 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICY 334 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHH
Confidence 334455777788999999999999999887765 45577889999999999999999998876555555555444
|
The molecular function of this protein is uncertain. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.70 E-value=2.7 Score=42.13 Aligned_cols=149 Identities=15% Similarity=0.087 Sum_probs=97.3
Q ss_pred cCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHH
Q 043142 20 CDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDV 99 (512)
Q Consensus 20 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 99 (512)
.|+++.|-.++-.++++ .-+.++..+.+.|..++|+++- ..||. -| ....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF----elal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS-------TDPDQ-RF----ELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC-------CChhh-hh----hhhhhcCcHHHHHHHHHhh
Confidence 57777777766666632 3455666677777777777652 22222 12 2234568888887776543
Q ss_pred HHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHH
Q 043142 100 IRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVK 179 (512)
Q Consensus 100 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 179 (512)
.+..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+.+....+-....+.|. .
T Consensus 664 ------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~ 724 (794)
T KOG0276|consen 664 ------NSEVKWRQLGDAALSAGELPLASECFLRARD-------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------N 724 (794)
T ss_pred ------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------c
Confidence 3566788888888888999888888877533 56677777777777766666666666552 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc
Q 043142 180 TALVDMYAKCGLVKVARNLFEQL 202 (512)
Q Consensus 180 ~~li~~y~~~g~~~~A~~~~~~m 202 (512)
|...-+|...|+++++.+++.+-
T Consensus 725 N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred chHHHHHHHcCCHHHHHHHHHhc
Confidence 33344566778888877777554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.45 E-value=21 Score=37.66 Aligned_cols=177 Identities=12% Similarity=0.021 Sum_probs=112.3
Q ss_pred HHHHHHHccCChHHHHHHHccCCCCCchHHHHHHH----HHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC
Q 043142 12 KLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIR----AYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALS 87 (512)
Q Consensus 12 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 87 (512)
.-+++..+...++.|..+-+.-.. |...-..+.. -+-+.|++++|...|-+-+.. +.|. .++.-+....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence 345666666777777777655332 3333333333 345679999999988876543 3332 2455555555
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHH
Q 043142 88 AIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFS 167 (512)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~ 167 (512)
.+..-..+++.+.+.|+. +...-+.|+++|.|.++.+.-.+..+... .+--.+-.-..+..|.+.+-+++|..+-...
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 666666778888888864 45556779999999999999888877765 2211223556667777777777766554332
Q ss_pred HHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 043142 168 WRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK 205 (512)
Q Consensus 168 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~ 205 (512)
.. +..+... .+-..|++++|.+.+..++-.
T Consensus 490 ~~-----he~vl~i---lle~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 490 KK-----HEWVLDI---LLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred cc-----CHHHHHH---HHHHhcCHHHHHHHHhcCCHH
Confidence 21 2333333 344578899999999888743
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.43 Score=27.62 Aligned_cols=31 Identities=26% Similarity=0.233 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIELEPH 341 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 341 (512)
+|..+...+...|++++|...|++.++.+|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777788888888888888888887773
|
... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.36 E-value=8.5 Score=35.98 Aligned_cols=126 Identities=10% Similarity=0.159 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh--cC----CHHHHHHHHHhcCCC-------CchHHHHHHHHHHHcCC-
Q 043142 157 LPQGRELHGFSWRHRFELNVKVKTALVDMYAK--CG----LVKVARNLFEQLREK-------RVVSWNAMITGYAMHGH- 222 (512)
Q Consensus 157 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--~g----~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~~g~- 222 (512)
++....+++.+.+.|+.-+..++-+....... .. ....|..+|+.|.+. +-..+.+|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456778888888888887766654333333 22 345678888888752 33555555543 2222
Q ss_pred ---hHHHHHHHHHhHHCCC--CCHHHHHHHHHHHhc-CCC--HHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 043142 223 ---STKALDLFEKMKDEVQ--PDHITFVGVLSACSR-GGL--FDEGRMFFESMVRDYHIDPSVQHYTCMVD 285 (512)
Q Consensus 223 ---~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~-~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 285 (512)
.+.+...|+.+.+.|. .|..-+.+-+-++.. ... ..++..+++.+. +.|+++...+|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~-~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK-KNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCccccccccHHHH
Confidence 3466777777877666 344333333333332 222 346777888885 4488887777766543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.19 E-value=2.3 Score=38.94 Aligned_cols=57 Identities=19% Similarity=0.389 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhH
Q 043142 178 VKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMK 234 (512)
Q Consensus 178 ~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 234 (512)
++..++..+..+|+.+.+...++++... +...|..++.+|.+.|+...|+..|+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4445555555555555555555554432 23455555555555555555555555443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.46 Score=28.18 Aligned_cols=25 Identities=16% Similarity=0.078 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 043142 312 WGALLNSCKLHGHVKLAELALEKLI 336 (512)
Q Consensus 312 ~~~ll~~~~~~g~~~~A~~~~~~~~ 336 (512)
|..|...|...|++++|++++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555566666666666666666644
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.99 E-value=11 Score=33.57 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 043142 41 WNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120 (512)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 120 (512)
|..-..+|-...++++|...+.+..+ +..-|...|. .. ..++.|.-+.+++.+. +--...|+--..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-AA------KayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-AA------KAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-HH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 44444566666777777776666542 1121222221 11 2234444444444332 2234456666777888
Q ss_pred CCChHHHHHHHHhh
Q 043142 121 CSCVVNARQVFDKI 134 (512)
Q Consensus 121 ~g~~~~A~~~~~~m 134 (512)
+|..+.|-..+++.
T Consensus 104 ~GspdtAAmaleKA 117 (308)
T KOG1585|consen 104 CGSPDTAAMALEKA 117 (308)
T ss_pred hCCcchHHHHHHHH
Confidence 88877777666654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.91 E-value=0.5 Score=28.00 Aligned_cols=26 Identities=46% Similarity=0.556 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHH
Q 043142 40 LWNVLIRAYAWNGPYEVAIELYYRLL 65 (512)
Q Consensus 40 ~~~~li~~~~~~g~~~~A~~~~~~m~ 65 (512)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777777777777777643
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.77 E-value=9 Score=32.19 Aligned_cols=39 Identities=10% Similarity=0.091 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 043142 94 RIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFD 132 (512)
Q Consensus 94 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 132 (512)
+..+.+.+.+++|+..++..+++.+.+.|++..-..++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 455566667778888888888888888887766655543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.63 E-value=1.1 Score=38.18 Aligned_cols=88 Identities=16% Similarity=0.111 Sum_probs=66.2
Q ss_pred HhccCChHHHHHHHHhC-CCCC------CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccCh
Q 043142 287 LGHSGRLDEACDLIMQM-RVKP------DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANW 359 (512)
Q Consensus 287 ~~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 359 (512)
+.+.|++++|..-+... ..-| ..+.|..-..++.+.+.++.|+.-..++++++|....+..--..+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 45667777776666554 1111 2334555566778889999999999999999998777777778899999999
Q ss_pred hHHHHHHHHHHhCCC
Q 043142 360 EGVAKLRKLMIDRGI 374 (512)
Q Consensus 360 ~~a~~~~~~m~~~g~ 374 (512)
++|+.=++.+.+...
T Consensus 185 eealeDyKki~E~dP 199 (271)
T KOG4234|consen 185 EEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999999887654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.56 Score=27.16 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC
Q 043142 109 FVGAALIDMYAKCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd 140 (512)
.+|..+...|...|++++|+..|++..+.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777766654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.5 Score=27.61 Aligned_cols=32 Identities=13% Similarity=0.044 Sum_probs=23.2
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCChHHHH
Q 043142 96 HEDVIRNKWETDVFVGAALIDMYAKCSCVVNAR 128 (512)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 128 (512)
|++.++.. |.+..+|+.|...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34445554 567788888888888888888875
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.92 E-value=28 Score=36.49 Aligned_cols=169 Identities=12% Similarity=0.090 Sum_probs=91.4
Q ss_pred HHHHHccCChHHHHHHHccCCCC-----CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC
Q 043142 14 VHLYSACDCLHNAHQLFDRIPQR-----NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSA 88 (512)
Q Consensus 14 i~~y~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 88 (512)
++-+.+.+.+++|+.+-+..... -...+...|..+...|++++|-.+.-.|... +..-|.-.+.-++..++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 45566778888888887765432 2346777888888888888888887777643 33344444444444444
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSW 168 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 168 (512)
.... ...+.......+..+|..++-.+.. ..-..+++...+-.++...-..++++- ..+..
T Consensus 439 l~~I---a~~lPt~~~rL~p~vYemvLve~L~----~~~~~F~e~i~~Wp~~Lys~l~iisa~------------~~q~~ 499 (846)
T KOG2066|consen 439 LTDI---APYLPTGPPRLKPLVYEMVLVEFLA----SDVKGFLELIKEWPGHLYSVLTIISAT------------EPQIK 499 (846)
T ss_pred cchh---hccCCCCCcccCchHHHHHHHHHHH----HHHHHHHHHHHhCChhhhhhhHHHhhc------------chHHH
Confidence 4322 1112211112355677777766655 222222222222222222222222221 00111
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc
Q 043142 169 RHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV 207 (512)
Q Consensus 169 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~ 207 (512)
+. .-+...-..|+..|...+++++|...+-...++++
T Consensus 500 q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 500 QN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 11 11222334488999999999999999988877664
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.87 E-value=10 Score=31.45 Aligned_cols=90 Identities=19% Similarity=0.109 Sum_probs=54.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCHhHHHHHHHHHHHcCCH
Q 043142 248 LSACSRGGLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRLDEACDLIMQMR-VKPDPGVWGALLNSCKLHGHV 325 (512)
Q Consensus 248 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~ 325 (512)
++.-...++.+.+..++..+. -+.|. ...-..-...+.+.|++.+|+.+|+++. -.|....-.+|+..|....+-
T Consensus 17 ~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 344456678888888888774 45663 3333334445778888888888888883 234444555666666554443
Q ss_pred HHHHHHHHHHHhcCC
Q 043142 326 KLAELALEKLIELEP 340 (512)
Q Consensus 326 ~~A~~~~~~~~~~~p 340 (512)
..=....+++++.++
T Consensus 94 ~~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 94 PSWRRYADEVLESGA 108 (160)
T ss_pred hHHHHHHHHHHhcCC
Confidence 444444555555554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.48 E-value=14 Score=32.35 Aligned_cols=175 Identities=15% Similarity=0.026 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHH
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFS 167 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~ 167 (512)
+..|+--|.+.+... |.-+.+||-|.--+...|+++.|.+.|+...+.+|.- .+...=.-++.-.|++..|.+-+...
T Consensus 81 ~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 81 RALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHH
Confidence 333444444444332 3346788888888889999999999999999998742 23333233345568888887766655
Q ss_pred HHcC-CCCchHHHHHHHHHHHhcCCHHHHHH-HHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCC------
Q 043142 168 WRHR-FELNVKVKTALVDMYAKCGLVKVARN-LFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQP------ 239 (512)
Q Consensus 168 ~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~-~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p------ 239 (512)
-+.. -.|-...|--+. -..-+..+|.. +.++....|..-|..-|-.|.-..-.+ ..++++++.....
T Consensus 160 YQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae 234 (297)
T COG4785 160 YQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAE 234 (297)
T ss_pred HhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHH
Confidence 5543 233333333222 22335555554 344555555555555444333221111 2233333322111
Q ss_pred -CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043142 240 -DHITFVGVLSACSRGGLFDEGRMFFESMVR 269 (512)
Q Consensus 240 -~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 269 (512)
-+.||--+..-+...|++++|..+|+-.+.
T Consensus 235 ~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 235 HLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 235777888889999999999999988764
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.31 E-value=13 Score=34.06 Aligned_cols=61 Identities=13% Similarity=0.063 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
+++.....|...|.+.+|.++.++++.++|-+...+..|+..++..|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4455567789999999999999999999999999999999999999998888888888753
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.08 E-value=0.85 Score=26.24 Aligned_cols=31 Identities=29% Similarity=0.268 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhhhhCCCC
Q 043142 110 VGAALIDMYAKCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd 140 (512)
.+..+...|.+.|++++|++.|++..+.+|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4556677777778888888877777766554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.08 E-value=40 Score=37.20 Aligned_cols=87 Identities=17% Similarity=0.134 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 043142 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLL 287 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 287 (512)
..|.+...-+.+...+++|.-.|+..-+ .--.+.+|...|++++|..+..++.. +-.--..+-..|+.-+
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--------lekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGK--------LEKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhcc--------HHHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHH
Confidence 3444444555556677777666665321 12345677778888888888776631 1111122336677777
Q ss_pred hccCChHHHHHHHHhCC
Q 043142 288 GHSGRLDEACDLIMQMR 304 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m~ 304 (512)
...++.-+|-++..+..
T Consensus 1010 ~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHcccchhHHHHHHHHh
Confidence 77888888777777663
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.91 E-value=5.4 Score=34.10 Aligned_cols=92 Identities=17% Similarity=0.164 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-C---CHHHHHH
Q 043142 177 KVKTALVDMYAKCGLVKVARNLFEQLREKR------VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-P---DHITFVG 246 (512)
Q Consensus 177 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p---~~~t~~~ 246 (512)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+...... + +...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456678888899999999999998887654 24566777777788888888877777654322 1 1111111
Q ss_pred HHH--HHhcCCCHHHHHHHHHHHH
Q 043142 247 VLS--ACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 247 ll~--a~~~~g~~~~a~~~~~~~~ 268 (512)
+.. ++...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 2233566666666665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.50 E-value=2.2 Score=34.66 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=37.5
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 321 LHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 321 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
..++.++++.++..+.-+.|..+..-..-...+...|+|++|.++|+.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36677777777777777777766666666666777777777777777776554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.32 E-value=21 Score=33.09 Aligned_cols=81 Identities=9% Similarity=0.062 Sum_probs=46.9
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh----HHHHHHHHhhhhCCCChhHHHH
Q 043142 71 PDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCV----VNARQVFDKILERDPSEATLVT 146 (512)
Q Consensus 71 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~pd~~t~~~ 146 (512)
+|.......+.++...|..+.... ...+.+ .+|..+-...+.++.+.|+. +++...+..+...+|+...-..
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~-l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~ 110 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRL-AIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRAS 110 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHH-HHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHH
Confidence 455555556666666664332222 222322 34666666677777777763 4567777766666677666666
Q ss_pred HHHHHhccC
Q 043142 147 VISASADIA 155 (512)
Q Consensus 147 ll~~~~~~~ 155 (512)
.+.+++..+
T Consensus 111 A~~aLG~~~ 119 (280)
T PRK09687 111 AINATGHRC 119 (280)
T ss_pred HHHHHhccc
Confidence 666665543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=87.84 E-value=25 Score=33.32 Aligned_cols=124 Identities=14% Similarity=0.078 Sum_probs=72.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcC-----CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCch----
Q 043142 145 VTVISASADIAALPQGRELHGFSWRHR-----FELNVKVKTALVDMYAKCGLVKVARNLFEQLR-------EKRVV---- 208 (512)
Q Consensus 145 ~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~~~~---- 208 (512)
.++..+....+.++++.+.|+.+.+.. ......++.+|...|.+..|+++|.-...+.. -.|..
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 345555666666777777776665532 12234677788888888888887755443322 22321
Q ss_pred --HHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCH----HHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 209 --SWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDH----ITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 209 --~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
+.--|.-++-..|+..+|.+.-++..+... -|. .....+.+.|...|+.+.|..-|++..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 122234456667777777777666543222 333 334456667777888887776666554
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=87.61 E-value=41 Score=35.50 Aligned_cols=114 Identities=9% Similarity=0.010 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 043142 256 LFDEGRMFFESMVRDYHIDPS--VQHYTCMVDLLGHSGRLDEACDLIMQMR-VKPDPGVWGALLNSCKLHGHVKLAELAL 332 (512)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 332 (512)
+.+.|..++.......++.+. ......+.......+..++|...+.... ...+...+..-+......++++.+...+
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i 335 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWL 335 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHH
Confidence 445566666655433333332 1222333322333322445555555442 1122233333333444566666655555
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 043142 333 EKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLM 369 (512)
Q Consensus 333 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 369 (512)
..|.........-..=+..++...|+.++|..+|+..
T Consensus 336 ~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 336 ARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5553322233344444555555566666666666654
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=87.49 E-value=10 Score=28.48 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHH
Q 043142 156 ALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKD 235 (512)
Q Consensus 156 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 235 (512)
..++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||+..|.++-. .+.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 356666666666554422 22222233445677899999999988888889888887765 356777777777777877
Q ss_pred CCCCCHHHHHH
Q 043142 236 EVQPDHITFVG 246 (512)
Q Consensus 236 ~~~p~~~t~~~ 246 (512)
.|.|...+|..
T Consensus 97 sg~p~lq~Faa 107 (115)
T TIGR02508 97 SGDPRLQTFVA 107 (115)
T ss_pred CCCHHHHHHHH
Confidence 77776666654
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.39 E-value=4.2 Score=30.28 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 043142 56 VAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALI 115 (512)
Q Consensus 56 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 115 (512)
++.+-++.+....+.|++....+.++||.+.+++..|.++++-+.... ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 455566666667778888888888888888888888888888765332 22344555554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.12 E-value=29 Score=36.74 Aligned_cols=178 Identities=12% Similarity=0.015 Sum_probs=103.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCch--HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Q 043142 144 LVTVISASADIAALPQGRELHGFSWRHRFELNV--KVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHG 221 (512)
Q Consensus 144 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 221 (512)
...-+....+...++.|..+- ...+.+++. .......+-+.+.|++++|...|-+....-.. ..+|.-|....
T Consensus 337 le~kL~iL~kK~ly~~Ai~LA---k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq 411 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLA---KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHH
Confidence 344455555555555555442 333433332 22233344455678888888777654322111 22455566666
Q ss_pred ChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHH
Q 043142 222 HSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIM 301 (512)
Q Consensus 222 ~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (512)
+..+-..+++.+.+.|..+...-..|+.+|.+.++.+.-..+.+..- + |.- ..-....+..+.+.+-+++|..+-.
T Consensus 412 ~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~--~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEW--FFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cce--eeeHHHHHHHHHHhChHHHHHHHHH
Confidence 67777777888888888555555678888888888887776665442 2 211 1113345667777777788877776
Q ss_pred hCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043142 302 QMRVKPDPGVWGALLNSCKLHGHVKLAELALEKL 335 (512)
Q Consensus 302 ~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 335 (512)
+.+. +......++ -..+++++|.+.++.+
T Consensus 488 k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 488 KFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred Hhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 6653 233333333 3467788888776654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.09 E-value=15 Score=30.01 Aligned_cols=53 Identities=4% Similarity=-0.040 Sum_probs=25.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC
Q 043142 86 LSAIEEGRRIHEDVIRNKWETDV-FVGAALIDMYAKCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd 140 (512)
..+.+.+..++..+.-.. |+. .+-..-...+.+.|++++|.++|+++.+..+.
T Consensus 23 ~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred cCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 455555555555444332 211 11111223345566666666666666555433
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.31 E-value=10 Score=32.09 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 325 VKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 325 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
+++|...|+++...+|.+. .|..-+.+.. +|-+++.++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~~------kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMAA------KAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHHH------THHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHHH------hhHHHHHHHHHHHhh
Confidence 6677788888888899874 6766665553 577888888777653
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.22 E-value=3.8 Score=37.72 Aligned_cols=109 Identities=13% Similarity=0.059 Sum_probs=71.8
Q ss_pred HHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHC---CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 043142 28 QLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEI---GLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKW 104 (512)
Q Consensus 28 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 104 (512)
+-|..-....+.+-..++..-....+++.+...+-.++.. ...|+.. -.++++.|.+ -+.++++.+...=+..|+
T Consensus 54 kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk-y~pq~~i~~l~npIqYGi 131 (418)
T KOG4570|consen 54 KKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK-YDPQKAIYTLVNPIQYGI 131 (418)
T ss_pred hhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc-cChHHHHHHHhCcchhcc
Confidence 3455544455566666666666677788888777776543 1233332 2233333333 356678888888888888
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC
Q 043142 105 ETDVFVGAALIDMYAKCSCVVNARQVFDKILERD 138 (512)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 138 (512)
-||..+++.||+.+.+.+++.+|.++.-.|...+
T Consensus 132 F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 132 FPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888888888887776665543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.92 E-value=0.72 Score=37.82 Aligned_cols=49 Identities=16% Similarity=0.288 Sum_probs=21.3
Q ss_pred HHHHHccCChHHHHHHHccCC----CCCchHHHHHHHHHHhcCCchHHHHHHH
Q 043142 14 VHLYSACDCLHNAHQLFDRIP----QRNLFLWNVLIRAYAWNGPYEVAIELYY 62 (512)
Q Consensus 14 i~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~ 62 (512)
|..|.+.+.++.+.++++.+. ..+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444444444444443332 1234444555555555554444444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.64 E-value=7.1 Score=29.42 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=41.8
Q ss_pred HHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 043142 225 KALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVD 285 (512)
Q Consensus 225 ~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 285 (512)
+...-++.+-.... |++....+.+.||.+.+++..|.++|+.+..+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 45555566666666 9999999999999999999999999999976544 33336776664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.40 E-value=4.6 Score=37.58 Aligned_cols=93 Identities=16% Similarity=0.168 Sum_probs=55.1
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCC-CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 043142 46 RAYAWNGPYEVAIELYYRLLEIGLVP-DNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCV 124 (512)
Q Consensus 46 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 124 (512)
.-|.++|.+++|+..|..-+. +.| |.+++..-..+|.+...+..|+.--...+... ..-...|..-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 346677888888888877665 345 77777777778887777776666555544332 11122233333333334555
Q ss_pred HHHHHHHHhhhhCCCCh
Q 043142 125 VNARQVFDKILERDPSE 141 (512)
Q Consensus 125 ~~A~~~~~~m~~~~pd~ 141 (512)
.+|.+-++...+..|+.
T Consensus 182 ~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHhHHHHHhhCccc
Confidence 66666666665555553
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.86 E-value=8.7 Score=33.21 Aligned_cols=73 Identities=5% Similarity=-0.006 Sum_probs=47.2
Q ss_pred HHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC--CCChhHHHHHHHHHhccCChHHHH
Q 043142 224 TKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHI--DPSVQHYTCMVDLLGHSGRLDEAC 297 (512)
Q Consensus 224 ~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~ 297 (512)
++|.+.|-++...+. -++.....|...|. ..+.+++.+++....+-.+- .+|+..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 567777777776666 55555555555444 56677777777766654322 346777777777777777777764
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=84.80 E-value=40 Score=32.77 Aligned_cols=181 Identities=15% Similarity=0.209 Sum_probs=119.0
Q ss_pred cCCHHHHHHHHHhcCCC----CchHHHHHHHHH-HHcCChHHHHHHHHHhHHCCC---CCHHHHHHHHHHHhcCCCHHHH
Q 043142 189 CGLVKVARNLFEQLREK----RVVSWNAMITGY-AMHGHSTKALDLFEKMKDEVQ---PDHITFVGVLSACSRGGLFDEG 260 (512)
Q Consensus 189 ~g~~~~A~~~~~~m~~~----~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~---p~~~t~~~ll~a~~~~g~~~~a 260 (512)
.|+-++|.+.|..+... .+..|-+|+.+- ....++.+|+.+|++..-.-+ ........-+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 69999999999988643 345677777654 446679999999999875433 3444555566677889999999
Q ss_pred HHHHHHHHHhcCCCCChhH-HHHHHHHHhccC---ChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043142 261 RMFFESMVRDYHIDPSVQH-YTCMVDLLGHSG---RLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLI 336 (512)
Q Consensus 261 ~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 336 (512)
..+-....+++.-.|-..- +..++..+.+.+ ..+.-..++..|.-.-....|..+.+.-...|+.+.|...-++++
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~ 284 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERAL 284 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 8888887777766664332 233333443333 344455566666422234589899999999999999999999999
Q ss_pred hcCCCCCchHHHHHHHHHh-----ccChhHHHHHHHHHH
Q 043142 337 ELEPHDAGNYVILSNIYAR-----AANWEGVAKLRKLMI 370 (512)
Q Consensus 337 ~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~ 370 (512)
.+...+ ..-...+..|.. ..+.+++.+.+..+.
T Consensus 285 ~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 285 KLADPD-SADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 876322 222233333422 234556655555443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.62 E-value=8.6 Score=33.09 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=11.1
Q ss_pred HHHhCCChHHHHHHHHhhhhCCC
Q 043142 117 MYAKCSCVVNARQVFDKILERDP 139 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~p 139 (512)
+|.+...+++|+.-|.++.+.+|
T Consensus 177 ayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCc
Confidence 44444444555554444444444
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.41 E-value=5.5 Score=30.02 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 56 VAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 56 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
+..+-++.+....+.|++....+.|++|.+.+++..|.++++-+...- .+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 445556666666777888888888888888888888888887665442 222335655543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.94 E-value=25 Score=29.62 Aligned_cols=52 Identities=19% Similarity=0.166 Sum_probs=25.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 043142 280 YTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELAL 332 (512)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 332 (512)
+..+++.+...|++-+|+++.++.+ ..+...-..++.+..+.+|...-..++
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~-~~~~~~~~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYH-KVDSVPARKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-CcccCCHHHHHHHHHHcCCHHHHHHHH
Confidence 4445566666666666666666642 112222234444444444444333333
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.91 E-value=57 Score=33.80 Aligned_cols=175 Identities=7% Similarity=0.052 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHH--HHH-HHhCCChHHHHHHHHhhhh-------CCCChhHHHHHHHHHhccC---
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAAL--IDM-YAKCSCVVNARQVFDKILE-------RDPSEATLVTVISASADIA--- 155 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~l--i~~-~~~~g~~~~A~~~~~~m~~-------~~pd~~t~~~ll~~~~~~~--- 155 (512)
...+.++++...+.|. ......-.+ ..+ +....+.+.|+..|..+.+ .+ +......+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~-~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG-LPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc-CCccccHHHHHHhcCCCCc
Confidence 4567777777777662 111211112 222 3455677888888877755 22 2334444555554422
Q ss_pred --ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh-cCCHHHHHHHHHhcCCCC-chHHHHHHHHHH----HcCChHHHH
Q 043142 156 --ALPQGRELHGFSWRHRFELNVKVKTALVDMYAK-CGLVKVARNLFEQLREKR-VVSWNAMITGYA----MHGHSTKAL 227 (512)
Q Consensus 156 --~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~----~~g~~~~A~ 227 (512)
+.+.|..++....+.|. |+....-..+..... ..+...|.++|......+ +.+.-.+...|. ...+...|.
T Consensus 306 ~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred cccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 45557777777766663 233222222222222 235667777777665543 222221211111 223566777
Q ss_pred HHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 043142 228 DLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESM 267 (512)
Q Consensus 228 ~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 267 (512)
.++++.-+.+.|-..--...+..+.. +..+.+...+..+
T Consensus 385 ~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 385 AYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYL 423 (552)
T ss_pred HHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHH
Confidence 77777766665333333333344444 5555555555444
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.85 E-value=8.8 Score=28.65 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 043142 223 STKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVD 285 (512)
Q Consensus 223 ~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 285 (512)
.-++.+-++.+..... |++....+.+.||.+.+++..|.++|+.++.+.| .+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3455556666666666 9999999999999999999999999998864433 24445665553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.42 E-value=1.3 Score=25.20 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=17.3
Q ss_pred HHHHHHhCCChHHHHHHHHhhhhCCCC
Q 043142 114 LIDMYAKCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~~pd 140 (512)
+..+|.+.|++++|.+.|+++.+..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 445566667777777777776665554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=83.30 E-value=1.8 Score=24.91 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhhhhCCC
Q 043142 110 VGAALIDMYAKCSCVVNARQVFDKILERDP 139 (512)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~p 139 (512)
+|..+...|.+.|++++|.+.|++..+.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456666777777777777777777665443
|
... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.26 E-value=2.6 Score=23.88 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=15.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 043142 315 LLNSCKLHGHVKLAELALEKLIELEPH 341 (512)
Q Consensus 315 ll~~~~~~g~~~~A~~~~~~~~~~~p~ 341 (512)
+..++...|+.++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 334455556666666666666655553
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=83.10 E-value=22 Score=34.98 Aligned_cols=121 Identities=12% Similarity=0.061 Sum_probs=68.8
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHHcCCHHHHH
Q 043142 252 SRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMR--VKPDPGVWGALLNSCKLHGHVKLAE 329 (512)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~ 329 (512)
...|++..|.+-+....+.+.-.|+.... ....+...|.++.+...+.... +.....+...+++.....|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34566665554444444444334443332 2333556677777777766551 2334456667777777777777777
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 330 LALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 330 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
...+-|+..+-.++.........--..|-++++...++++...+.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 777777765544444333333333445667777777777655443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.01 E-value=2.8 Score=38.91 Aligned_cols=109 Identities=12% Similarity=0.082 Sum_probs=78.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCC-CCHhHHHHHHHHHHHcCC
Q 043142 248 LSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK-PDPGVWGALLNSCKLHGH 324 (512)
Q Consensus 248 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~ 324 (512)
..-|.++|.+++|+..|...+ .+.| +..++..-..+|.+..++..|+.-.... .+. .-...|..-..+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 346888999999999999876 5678 8888888888999999988887665544 111 112256666666677889
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHH
Q 043142 325 VKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVA 363 (512)
Q Consensus 325 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 363 (512)
..+|.+-++.+++++|.+.. |-..|.+.....++.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE----LKKSLARINSLRERK 215 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhh
Confidence 99999999999999998653 334444444444443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.94 E-value=34 Score=30.44 Aligned_cols=24 Identities=8% Similarity=-0.085 Sum_probs=17.5
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 319 CKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
-...+++.+|+.+|+++....-++
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 356778899999999887655433
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.31 E-value=0.97 Score=37.05 Aligned_cols=83 Identities=19% Similarity=0.166 Sum_probs=43.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHH
Q 043142 147 VISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKA 226 (512)
Q Consensus 147 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 226 (512)
++..+.+.+.+....++++.+.+.+...+....+.++..|++.++.++..+.++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3444555556666666666666655555667777777777777665666555553222 2222333444444444444
Q ss_pred HHHHHH
Q 043142 227 LDLFEK 232 (512)
Q Consensus 227 ~~~~~~ 232 (512)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444433
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.27 E-value=1.9 Score=23.22 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhccChhHHHHHHH
Q 043142 345 NYVILSNIYARAANWEGVAKLRK 367 (512)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~ 367 (512)
....+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566777777777777777664
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.12 E-value=58 Score=32.58 Aligned_cols=173 Identities=10% Similarity=0.092 Sum_probs=96.6
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHH
Q 043142 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLREK--RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSAC 251 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~ 251 (512)
.|.....++++.++..-.+.-.+.+-.+|..- +-..|..++..|..+ ..++-..+++++.+....|.+.-..|..-|
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 34444556666666666666666666666542 345666677777776 456667777777665555554444444444
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCCC------hhHHHHHHHHHhccCChHHHHHHHHhC----CCCCCHhHHHHHHHHHHH
Q 043142 252 SRGGLFDEGRMFFESMVRDYHIDPS------VQHYTCMVDLLGHSGRLDEACDLIMQM----RVKPDPGVWGALLNSCKL 321 (512)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~ 321 (512)
.+ ++.+.+..+|..+..+ +-|. ...|.-|+... ..+.+..+.+...+ +...-.+.+.-+-.-|..
T Consensus 143 Ek-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 44 6666777777766532 3331 12444444322 23444444444444 222233444555556667
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 043142 322 HGHVKLAELALEKLIELEPHDAGNYVILSNI 352 (512)
Q Consensus 322 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 352 (512)
..++++|++++..+++.+..|.-+-..++.-
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 7778888888777777665554444444433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.99 E-value=3 Score=25.18 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhhh
Q 043142 109 FVGAALIDMYAKCSCVVNARQVFDKIL 135 (512)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 135 (512)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456677777777777777777777654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.80 E-value=15 Score=37.26 Aligned_cols=111 Identities=14% Similarity=0.063 Sum_probs=58.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHccC-------C--------------CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRI-------P--------------QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEI 67 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~-------~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 67 (512)
.-+.+...+.++|-.++|+.+--.- . ..+..-|..|.++..+.|++..|.+.|.+...
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d- 694 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARD- 694 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcc-
Confidence 3456666777777766666542110 0 12445566666666666666666666655432
Q ss_pred CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhh
Q 043142 68 GLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKI 134 (512)
Q Consensus 68 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 134 (512)
|..|+-.+...|+-+....+-....+.| .. |....+|...|+++++.+++.+-
T Consensus 695 --------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 695 --------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KN-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --------hhhhhhhhhhcCChhHHHHHHHHHHhhc-cc-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 4445555555555554444444444444 22 22233445566666666665443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.46 E-value=66 Score=32.78 Aligned_cols=120 Identities=15% Similarity=0.086 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-----CCCCCHhHHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-----RVKPDPGVWGA 314 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~ 314 (512)
+..+|..-+.--...|+.+....+|+...-- +.--...|--.+.-....|+.+-|..++.+. +-.|......+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 4455666666666667777777666665411 1112334444444444456666666665544 11222222222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHH
Q 043142 315 LLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVA 363 (512)
Q Consensus 315 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 363 (512)
.+ +-..|++..|..+++++.+.-|.....-..-+....+.|+.+.+.
T Consensus 374 ~f--~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 374 RF--EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HH--HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 22 234567777777777776655554444444455556666666666
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.41 E-value=61 Score=32.33 Aligned_cols=87 Identities=11% Similarity=0.152 Sum_probs=38.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH---hccCChHHHHHHHHhC--CCCCCHhHHHHHHHHHHHc
Q 043142 248 LSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLL---GHSGRLDEACDLIMQM--RVKPDPGVWGALLNSCKLH 322 (512)
Q Consensus 248 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~ 322 (512)
+.-+-+.+-...|...+..+... -+|+...|..+|..= ..+| +..+..+++.| .+..|+..|...+.--..+
T Consensus 467 l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~ 543 (568)
T KOG2396|consen 467 LDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPL 543 (568)
T ss_pred HHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccC
Confidence 33444445555555555555321 122444444444322 1222 44444444444 1224444555544444455
Q ss_pred CCHHHHHHHHHHHHh
Q 043142 323 GHVKLAELALEKLIE 337 (512)
Q Consensus 323 g~~~~A~~~~~~~~~ 337 (512)
|..+.+-.++.++.+
T Consensus 544 g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 544 GRPENCGQIYWRAMK 558 (568)
T ss_pred CCcccccHHHHHHHH
Confidence 555555555544443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=81.39 E-value=52 Score=31.51 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=55.2
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 308 DPGVWGALLNSCKLHGHVKLAELALEKLIELEPH----DAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
...+|..+...+++.|.++.|...+.++...++. .+.....-+......|+..+|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3458999999999999999999999999986522 456666778888999999999999988877433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=81.29 E-value=3.4 Score=22.49 Aligned_cols=29 Identities=31% Similarity=0.202 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 043142 312 WGALLNSCKLHGHVKLAELALEKLIELEP 340 (512)
Q Consensus 312 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 340 (512)
|..+...+...++++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44444555555555666655555555444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.94 E-value=4.1 Score=24.54 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIE 337 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~ 337 (512)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455555556666666666666655554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.79 E-value=44 Score=30.33 Aligned_cols=188 Identities=18% Similarity=0.240 Sum_probs=103.2
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHHHHHc-----CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---------
Q 043142 139 PSEATLVTVISASADIAALPQGRELHGFSWRH-----RFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE--------- 204 (512)
Q Consensus 139 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------- 204 (512)
-+.-+.++++.-.+...+.+.-...|+.-++. +-..--.+-+.|...|...|++.+-.+++.++..
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 34444555555555444444444444432221 0000112334567777888888888888777642
Q ss_pred ---CC---chHHHHHHHHHHHcCChHHHHHHHHHhHHC--CCCCHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHhc
Q 043142 205 ---KR---VVSWNAMITGYAMHGHSTKALDLFEKMKDE--VQPDHITFVGVLSACS-----RGGLFDEGRMFFESMVRDY 271 (512)
Q Consensus 205 ---~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~ 271 (512)
++ ...|..=|..|..+.+-.+...+|++...- .+|.+.... +++-|. +.|.+++|..-|-+..+.+
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 11 246777788888888877888888876543 337766554 455553 5678887764433333443
Q ss_pred CC--CC---ChhHHHHHHHHHhccCChHHHHHHHH--hC-CC--CCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 043142 272 HI--DP---SVQHYTCMVDLLGHSGRLDEACDLIM--QM-RV--KPDPGVWGALLNSCKLHGHVKLAELALE 333 (512)
Q Consensus 272 ~~--~p---~~~~~~~li~~~~~~g~~~~A~~~~~--~m-~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 333 (512)
.- .| +.--|..|..++.+.|-- -|+ +. |. .|.....+.|+.+|-.+ ++.+-++++.
T Consensus 262 DEsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il~ 327 (440)
T KOG1464|consen 262 DESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQNN-DIIEFERILK 327 (440)
T ss_pred cccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence 22 23 233466677777776621 111 11 33 35556778888888544 4444444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.8 bits (156), Expect = 4e-11
Identities = 22/179 (12%), Positives = 54/179 (30%), Gaps = 8/179 (4%)
Query: 139 PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNL 198
P E L ++ + +L + G + + + A + +A +L
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 199 FEQLREKR-------VVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSA 250
+R + +NA++ G+A G + + + +KD + PD +++ L
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 251 CSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDP 309
R + + ++ + L + + P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 43.3 bits (100), Expect = 2e-04
Identities = 20/177 (11%), Positives = 45/177 (25%), Gaps = 11/177 (6%)
Query: 234 KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRL 293
+ P +L D + + Q + +L
Sbjct: 85 QAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH-SQAQLSGQQQRLLAFFKCCLLTDQL 143
Query: 294 DEACDLIMQMR------VKPDPGVWGALLNSCKLHGHVKLAELALEKLIE--LEPHDAGN 345
A L++ ++ A++ G K L + + L P D +
Sbjct: 144 PLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLS 202
Query: 346 YVILSNIYARA-ANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPN 401
Y R + + + + M G+K + + + + A +
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.9 bits (99), Expect = 2e-04
Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 1/115 (0%)
Query: 19 ACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPF 78
A L H + L ++N ++ +A G ++ + + + + + GL PD ++
Sbjct: 146 AHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205
Query: 79 ALKACSALSAIEEG-RRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFD 132
AL+ R E + + + A L+ + + + +V
Sbjct: 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 3e-05
Identities = 33/270 (12%), Positives = 81/270 (30%), Gaps = 14/270 (5%)
Query: 45 IRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKW 104
++ + G Y+ I R+ P+ A A + + +++ +
Sbjct: 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLY-RAYLAQRKYGVVLDEIKPSSA 62
Query: 105 ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELH 164
V + A S D+ + R ++ A+
Sbjct: 63 PELQAV-RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAA--SIYFYDQNPDA 119
Query: 165 GFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR---VVSWNAMITGYAMHG 221
H+ + +++ V + K + +AR ++++++ ++ A G
Sbjct: 120 ALRTLHQGD-SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG 178
Query: 222 HST--KALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQH 279
A +F++M D+ P + G + G ++ + + P
Sbjct: 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET-- 236
Query: 280 YTCMVDLLGHSGRLDEACDLIMQMRVKPDP 309
+V L H G+ E + +
Sbjct: 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 5e-05
Identities = 35/208 (16%), Positives = 70/208 (33%), Gaps = 9/208 (4%)
Query: 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVL-SACSRGGLFDEGRMFFESM 267
S N + G+ +A+ L+ K EV P+ L S + G E M ++
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKAL-EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 69
Query: 268 VRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQ-MRVKPD-PGVWGALLNSCKLHGH 324
+R I P Y+ M + L + A + +++ P L + K G+
Sbjct: 70 IR---ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126
Query: 325 VKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIE 384
+ A + ++L+P Y L++ +W + K ++ +
Sbjct: 127 IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPS 186
Query: 385 V-KNKAHAFLSGDASHPNCDEIYAKLKW 411
V + + + E + L
Sbjct: 187 VHPHHSMLYPLSHGFRKAIAERHGNLCL 214
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 3e-04
Identities = 33/214 (15%), Positives = 64/214 (29%), Gaps = 43/214 (20%)
Query: 36 RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRI 95
+N+ L+ YE +Y RLL I + + +K I+ GR I
Sbjct: 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156
Query: 96 HEDVIRNKWET-DVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADI 154
+ + V+V AAL++ Y A ++F+ L++ V
Sbjct: 157 FKKAREDARTRHHVYVTAALMEYYCSKD-KSVAFKIFELGLKKYGDIPEYV--------- 206
Query: 155 AALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVS----- 209
A +D + R LFE++ +
Sbjct: 207 -------------------------LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241
Query: 210 --WNAMITGYAMHGHSTKALDLFEKMKDEVQPDH 241
W + + G L + ++ + ++
Sbjct: 242 EIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 4e-04
Identities = 34/244 (13%), Positives = 70/244 (28%), Gaps = 47/244 (19%)
Query: 9 LATKLVHLYSACDCLHNAHQLFDR----IPQRNLFLWNVLIRAYAWNGPYEVAIELYYRL 64
L + + +A A +++R + ++N+ L+ YE +Y RL
Sbjct: 288 LLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 347
Query: 65 LEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCV 124
L I + + +K I+ GR I + + M CS
Sbjct: 348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY-VTAALMEYYCSKD 406
Query: 125 VN-ARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALV 183
+ A ++F+ L++ V A +
Sbjct: 407 KSVAFKIFELGLKKYGDIPEYV----------------------------------LAYI 432
Query: 184 DMYAKCGLVKVARNLFEQLREKRVVS-------WNAMITGYAMHGHSTKALDLFEKMKDE 236
D + R LFE++ + W + + G L + ++
Sbjct: 433 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492
Query: 237 VQPD 240
+ +
Sbjct: 493 FREE 496
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 36/185 (19%), Positives = 59/185 (31%), Gaps = 15/185 (8%)
Query: 219 MHGHSTKALDLFEKMKDEVQPDHITFVGVL-SACSRGGLFDEGRMFFESMVRDYHIDP-S 276
M + L +P +L A G G M + + + P
Sbjct: 1 MTADGPRELLQLRAAV-RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGH 56
Query: 277 VQHYTCMVDLLGHSGRLDEACDLIMQ-MRVKPD-PGVWGALLNSCKLHGHVKLAELALEK 334
+ + + R EA L+ Q P+ PG+ L ++ + G + A A +
Sbjct: 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR 116
Query: 335 LIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLS 394
+L P + L N R +W + L + + A AFLS
Sbjct: 117 AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEP-------FAFLS 169
Query: 395 GDASH 399
DAS
Sbjct: 170 EDASA 174
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 512 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.68 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.63 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.6 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.53 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.49 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.49 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.46 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.45 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.4 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.39 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.38 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.38 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.35 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.35 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.32 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.31 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.22 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.22 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.22 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.21 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.17 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.17 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.17 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.15 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.13 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.1 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.06 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.05 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.05 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.04 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.02 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.01 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.01 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.0 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.98 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.94 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.93 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.93 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.9 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.89 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.89 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.87 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.84 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.82 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.81 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.79 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.78 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.78 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.78 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.77 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.76 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.76 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.75 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.75 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.74 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.74 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.72 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.71 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.69 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.69 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.67 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.66 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.62 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.61 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.59 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.58 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.57 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.55 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.55 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.55 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.54 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.53 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.53 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.53 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.51 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.51 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.49 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.49 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.48 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.48 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.46 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.45 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.45 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.42 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.4 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.39 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.39 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.39 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.37 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.36 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.36 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.35 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.35 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.34 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.33 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.32 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.32 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.32 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.31 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.31 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.28 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.27 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.25 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.23 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.22 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.17 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.16 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.16 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.16 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.14 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.14 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.13 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.12 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.12 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.11 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.08 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.08 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.06 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.03 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.03 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.0 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.96 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.95 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.93 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.91 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.87 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.81 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.79 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.77 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.76 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.72 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.64 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.64 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.49 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.49 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.45 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.45 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.42 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.38 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.38 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.28 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.26 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.25 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.23 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.21 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.12 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.1 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.09 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.86 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.81 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.65 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.51 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.24 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.15 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.15 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.05 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.02 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.95 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.68 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.65 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.61 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.23 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.21 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.53 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.43 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.41 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.3 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.24 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.17 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.72 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.1 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.48 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 90.88 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 90.61 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.15 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.02 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.36 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.3 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.97 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.77 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.46 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.43 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.07 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.6 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 86.32 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.93 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 85.76 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 85.3 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 82.98 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 82.96 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 82.12 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.88 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 80.86 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.15 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=304.35 Aligned_cols=365 Identities=12% Similarity=0.049 Sum_probs=321.9
Q ss_pred CCCchhHHHHHHHHHHccCChHHHHHHHccCCCC-------------------CchHHHHHHHHHHhcCCchHHHHHHHH
Q 043142 3 FGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQR-------------------NLFLWNVLIRAYAWNGPYEVAIELYYR 63 (512)
Q Consensus 3 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~ 63 (512)
.++++.+++.++.+|.++|++++|+++|+++.+. ++.+|+.++.+|.+.|++++|+++|++
T Consensus 146 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (597)
T 2xpi_A 146 YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225 (597)
T ss_dssp GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3578889999999999999999999999964333 478899999999999999999999999
Q ss_pred HHHCCCCCCcc-hHHHH--------------------------------------HHHHhccCChHHHHHHHHHHHHhCC
Q 043142 64 LLEIGLVPDNF-TFPFA--------------------------------------LKACSALSAIEEGRRIHEDVIRNKW 104 (512)
Q Consensus 64 m~~~g~~p~~~-t~~~l--------------------------------------l~~~~~~~~~~~a~~~~~~~~~~g~ 104 (512)
|.+.+ |+.. .+..+ +..|.+.|++++|.++|+.+.+.
T Consensus 226 ~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-- 301 (597)
T 2xpi_A 226 ALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-- 301 (597)
T ss_dssp HHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--
T ss_pred HHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--
Confidence 98753 4432 22222 44556778889999999888765
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCC-ChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 043142 105 ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDP-SEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALV 183 (512)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 183 (512)
+++..+++.++.+|.+.|++++|.++|+++.+.+| +..++..++.++...|++++|..+++.+.+.. +.+..+++.++
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 380 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVG 380 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 58899999999999999999999999999998777 55689999999999999999999999998654 56788999999
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHH
Q 043142 184 DMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEG 260 (512)
Q Consensus 184 ~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a 260 (512)
.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+..+++..++..++.+|.+.|++++|
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998753 45789999999999999999999999999988778899999999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-------CCCCC--HhHHHHHHHHHHHcCCHHHHHHH
Q 043142 261 RMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-------RVKPD--PGVWGALLNSCKLHGHVKLAELA 331 (512)
Q Consensus 261 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~A~~~ 331 (512)
.++|+.+.+.. ..+..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++++|.+.
T Consensus 461 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 461 NEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998542 337889999999999999999999999988 44777 67999999999999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 332 LEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 332 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
++++.+.+|+++.+|..++.+|.+.|++++|.+.++++.+...
T Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 539 LNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999987643
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=300.07 Aligned_cols=361 Identities=12% Similarity=-0.013 Sum_probs=319.0
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHccCC--CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 043142 5 FHPVLATKLVHLYSACDCLHNAHQLFDRIP--QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKA 82 (512)
Q Consensus 5 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 82 (512)
+++..++.++..|.+.|++++|+.+|+++. .|+..+|+.++.+|.+.|++++|+.+|+++.. ..++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHH
Confidence 577889999999999999999999999985 37888999999999999999999999999864 35788899999999
Q ss_pred HhccCChHHHHHHHHHHHHh---------------CCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhH-HHH
Q 043142 83 CSALSAIEEGRRIHEDVIRN---------------KWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEAT-LVT 146 (512)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t-~~~ 146 (512)
+.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|++|.+.+|+..+ +..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 99999999999999853211 22345889999999999999999999999999998886543 222
Q ss_pred H--------------------------------------HHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 043142 147 V--------------------------------------ISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAK 188 (512)
Q Consensus 147 l--------------------------------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 188 (512)
+ +..|.+.|++++|.++++.+.+. +++..+++.++.+|.+
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHH
Confidence 2 44556778899999999988776 5889999999999999
Q ss_pred cCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 043142 189 CGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFE 265 (512)
Q Consensus 189 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 265 (512)
.|++++|.++|+++.+ .+..+|+.++.+|.+.|+.++|.++|+++....+.+..++..++..|.+.|++++|..+|+
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999863 4678999999999999999999999999997777889999999999999999999999999
Q ss_pred HHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 266 SMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK-PDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 266 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
++.+. .| +..+|+.++.+|.+.|++++|+++|+++ ... ++..+|..++.+|...|++++|.+.|+++.+..|.+
T Consensus 398 ~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 474 (597)
T 2xpi_A 398 KSSTM---DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474 (597)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99754 45 6889999999999999999999999988 333 467799999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 343 AGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+.+|..++.+|.+.|++++|.++|+++.+.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999876
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-27 Score=229.90 Aligned_cols=354 Identities=12% Similarity=0.029 Sum_probs=313.4
Q ss_pred HHHHHHccCChHHHHHHHccCC--CC-CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCh
Q 043142 13 LVHLYSACDCLHNAHQLFDRIP--QR-NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAI 89 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 89 (512)
+...+.+.|++++|++.|+++. .| +...+..+...+.+.|++++|...++...+.. +.+..+|..+..++...|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 4556778999999999998864 23 56677888888999999999999999988753 34567899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh-HHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 90 EEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA-TLVTVISASADIAALPQGRELHGFSW 168 (512)
Q Consensus 90 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~ 168 (512)
++|.+.|+++++.. +.+...|..+...|.+.|++++|.+.|+++.+.+|+.. .+..+...+...|++++|.+.+..+.
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999875 45677899999999999999999999999999999765 46667778889999999999999999
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHH
Q 043142 169 RHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFV 245 (512)
Q Consensus 169 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~ 245 (512)
+.. +.+..+++.+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.....+.+..++.
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 874 45678999999999999999999999999864 34678999999999999999999999999887777788999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CC-CCCHhHHHHHHHHHHHc
Q 043142 246 GVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RV-KPDPGVWGALLNSCKLH 322 (512)
Q Consensus 246 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~ 322 (512)
.+..++...|++++|...|+.+.+. .| +..+|..+...|.+.|++++|.+.++++ .. .++..+|..+...+...
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999999753 56 5788999999999999999999999988 22 34667999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 323 GHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 323 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999864
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-29 Score=249.31 Aligned_cols=197 Identities=11% Similarity=0.090 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC---------hH
Q 043142 56 VAIELYYRLLEIGLVPDNF-TFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC---------VV 125 (512)
Q Consensus 56 ~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---------~~ 125 (512)
.+..+.+++.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3445556666666554433 4677777777788888888888888777777788888888777776654 45
Q ss_pred HHHHHHHhhhhCC--CChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043142 126 NARQVFDKILERD--PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR 203 (512)
Q Consensus 126 ~A~~~~~~m~~~~--pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 203 (512)
.|.++|++|.+.+ ||..||+++|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555443 55555555555555555555555555555555555555555555555555555555555555553
Q ss_pred ----CCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHh
Q 043142 204 ----EKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACS 252 (512)
Q Consensus 204 ----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~ 252 (512)
.||..+|++||.+|++.|+.++|.++|++|++.+. |+..||+.++..|+
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 23445555555555555555555555555555555 55555555555444
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-26 Score=224.39 Aligned_cols=347 Identities=14% Similarity=0.127 Sum_probs=307.6
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHccCC---CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-chHHHHHH
Q 043142 6 HPVLATKLVHLYSACDCLHNAHQLFDRIP---QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN-FTFPFALK 81 (512)
Q Consensus 6 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 81 (512)
++..+..+...+.+.|++++|...++... +.+..+|+.+...|.+.|++++|++.|+++... .|+. .+|..+..
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 109 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAA 109 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHH
Confidence 45577788888999999999999998754 347789999999999999999999999999874 4554 47899999
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHHhccCChHHH
Q 043142 82 ACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS-EATLVTVISASADIAALPQG 160 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a 160 (512)
++...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.+.|+++.+.+|+ ..++..+...+...|++++|
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 188 (388)
T 1w3b_A 110 ALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999885 445677888999999999999999999999998886 46788999999999999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCC
Q 043142 161 RELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEV 237 (512)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 237 (512)
...++.+++.. +.+...+..+...+...|++++|...|++..+ .+..+|..+...|...|++++|++.|+++....
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 267 (388)
T 1w3b_A 189 IHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999875 45678899999999999999999999998653 346889999999999999999999999999887
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHH
Q 043142 238 QPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGAL 315 (512)
Q Consensus 238 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l 315 (512)
+.+..++..+..++.+.|++++|...|+.+.+. .+++..++..+...+.+.|++++|.+.++++ ...|+ ..+|..+
T Consensus 268 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 345 (388)
T 1w3b_A 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345 (388)
T ss_dssp SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 777888999999999999999999999999865 2347889999999999999999999999988 44554 5689999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 043142 316 LNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAAN 358 (512)
Q Consensus 316 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 358 (512)
...+...|++++|...++++++..|.++..|..+...+...|+
T Consensus 346 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999999999999999999988877653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-28 Score=240.47 Aligned_cols=196 Identities=11% Similarity=0.076 Sum_probs=163.8
Q ss_pred HHHHHHccCCCC-----CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC---------hH
Q 043142 25 NAHQLFDRIPQR-----NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSA---------IE 90 (512)
Q Consensus 25 ~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~ 90 (512)
.+..++.++.++ ....++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344455555532 2345788899999999999999999999999999999999999999987654 67
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC--CChhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 91 EGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD--PSEATLVTVISASADIAALPQGRELHGFSW 168 (512)
Q Consensus 91 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 168 (512)
.|.++|++|.+.|+.||..+||+||++|++.|++++|.++|++|.+.+ ||..||+++|.+|++.|++++|.++|+.|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999998875 899999999999999999999999999999
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCchHHHHHHHHHHHc
Q 043142 169 RHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR----EKRVVSWNAMITGYAMH 220 (512)
Q Consensus 169 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~ 220 (512)
+.|+.||..+|++||.+|++.|++++|.++|++|. .++..||+.++..|+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999986 46788999999888764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-23 Score=208.76 Aligned_cols=310 Identities=13% Similarity=0.074 Sum_probs=269.4
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
++..|..+...+.+.|++++|+.+|+++.... +.+..++..+..++...|++++|.+.++.+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 67789999999999999999999999998753 3356788889999999999999999999999886 557889999999
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCChh----HHHHH------------HHHHhccCChHHHHHHHHHHHHcCCCCchHHHH
Q 043142 117 MYAKCSCVVNARQVFDKILERDPSEA----TLVTV------------ISASADIAALPQGRELHGFSWRHRFELNVKVKT 180 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd~~----t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 180 (512)
.|.+.|++++|.+.|+++.+.+|+.. .+..+ ...+...|++++|...++.+.+.. +.+..++.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 99999999999999999999988763 44444 444788999999999999998864 55788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHH----------
Q 043142 181 ALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGV---------- 247 (512)
Q Consensus 181 ~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~l---------- 247 (512)
.+..+|.+.|++++|..+|+++.+ .+..+|..+...|...|++++|+..|+++....+.+...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 261 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 261 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999863 4578999999999999999999999999987766555555444
Q ss_pred --HHHHhcCCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHH
Q 043142 248 --LSACSRGGLFDEGRMFFESMVRDYHIDPS-----VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNS 318 (512)
Q Consensus 248 --l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 318 (512)
..++.+.|++++|..+|+.+.+. .|+ ..++..+..++.+.|++++|+..++++ ...| +...|..+..+
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 78899999999999999999864 554 458899999999999999999999987 4445 56799999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 043142 319 CKLHGHVKLAELALEKLIELEPHDAGNYVILSNI 352 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 352 (512)
|...|++++|...++++++.+|.++..+..+..+
T Consensus 339 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999999999999999999999998888843
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-23 Score=213.61 Aligned_cols=360 Identities=12% Similarity=0.007 Sum_probs=307.8
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHccCC--CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHH
Q 043142 7 PVLATKLVHLYSACDCLHNAHQLFDRIP--QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD-NFTFPFALKAC 83 (512)
Q Consensus 7 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~ 83 (512)
...+..+...|.+.|++++|++.|+++. .||...|..+..+|.+.|++++|+..|+++.+.+ |+ ..++..+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHH
Confidence 3456777888999999999999999975 3789999999999999999999999999998854 44 46888899999
Q ss_pred hccCChHHHHHHHHHHHHhCCCC---------------------------------------------------------
Q 043142 84 SALSAIEEGRRIHEDVIRNKWET--------------------------------------------------------- 106 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~--------------------------------------------------------- 106 (512)
...|++++|.+.|+.+.+.+...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999988765211
Q ss_pred ---------------------ChhHHHHHHHHHHh---CCChHHHHHHHHhhhh-----C--CC--------ChhHHHHH
Q 043142 107 ---------------------DVFVGAALIDMYAK---CSCVVNARQVFDKILE-----R--DP--------SEATLVTV 147 (512)
Q Consensus 107 ---------------------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~--~p--------d~~t~~~l 147 (512)
+...+..+...+.. .|++++|...|+++.+ . +| +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 12223333333443 8999999999999987 4 33 23567788
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChH
Q 043142 148 ISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHST 224 (512)
Q Consensus 148 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~ 224 (512)
...+...|++++|...+..+.+.... ..++..+...|...|++++|...|+.+.+. +...|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999987644 888999999999999999999999987643 4678999999999999999
Q ss_pred HHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 225 KALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 225 ~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
+|+..|++.....+.+..++..+...+...|++++|..+++.+.+. .| +...+..+...|.+.|++++|...++++
T Consensus 322 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999887777788999999999999999999999999865 34 6788999999999999999999999887
Q ss_pred ----CCCCC----HhHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 304 ----RVKPD----PGVWGALLNSCKL---HGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 304 ----~~~p~----~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+..++ ...|..+...+.. .|++++|...++++++..|.++.++..++.+|.+.|++++|...+++..+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22222 3488999999999 999999999999999999999999999999999999999999999999875
Q ss_pred C
Q 043142 373 G 373 (512)
Q Consensus 373 g 373 (512)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-22 Score=201.37 Aligned_cols=332 Identities=11% Similarity=0.019 Sum_probs=274.5
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHccCC---CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHH
Q 043142 5 FHPVLATKLVHLYSACDCLHNAHQLFDRIP---QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALK 81 (512)
Q Consensus 5 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 81 (512)
.++..+..+...|.+.|++++|+.+|+++. +.+..+|..+..+|.+.|++++|+..|+++.+.+. .+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHH
Confidence 356688999999999999999999999864 34788999999999999999999999999988642 24568888999
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCCh---hHHHHH------------HHHHHhCCChHHHHHHHHhhhhCCC-ChhHHH
Q 043142 82 ACSALSAIEEGRRIHEDVIRNKWETDV---FVGAAL------------IDMYAKCSCVVNARQVFDKILERDP-SEATLV 145 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~p-d~~t~~ 145 (512)
++...|++++|.+.++.+++.. +.+. ..+..+ ...|.+.|++++|...|+++.+.+| +..++.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999999998865 3344 566555 4448999999999999999998887 456788
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CchHHHHH---------
Q 043142 146 TVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE--K-RVVSWNAM--------- 213 (512)
Q Consensus 146 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~l--------- 213 (512)
.+..++...|++++|...+..+.+.. +.+..++..+..+|.+.|++++|...|+++.+ + +...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 89999999999999999999998864 45788999999999999999999999998863 3 34445444
Q ss_pred ---HHHHHHcCChHHHHHHHHHhHHCCCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHH
Q 043142 214 ---ITGYAMHGHSTKALDLFEKMKDEVQPD----HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVD 285 (512)
Q Consensus 214 ---i~~~~~~g~~~~A~~~~~~m~~~~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 285 (512)
...+...|++++|+..|+++....+.+ ...+..+..++.+.|++++|...++.+.+. .| +...+..+..
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 788999999999999999998865533 447888899999999999999999999754 45 6889999999
Q ss_pred HHhccCChHHHHHHHHhC-CCCCCH-hHHHHHHHH------------HHHcC-----CHHHHHHHHHH-HHhcCCCC
Q 043142 286 LLGHSGRLDEACDLIMQM-RVKPDP-GVWGALLNS------------CKLHG-----HVKLAELALEK-LIELEPHD 342 (512)
Q Consensus 286 ~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~------------~~~~g-----~~~~A~~~~~~-~~~~~p~~ 342 (512)
+|...|++++|...++++ ...|+. ..+..+..+ |...| +.+++.+.+++ .++..|++
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999988 556654 456555533 33333 56777888886 66666653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-21 Score=199.46 Aligned_cols=361 Identities=14% Similarity=0.082 Sum_probs=292.9
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHccCC---CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 043142 7 PVLATKLVHLYSACDCLHNAHQLFDRIP---QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKAC 83 (512)
Q Consensus 7 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 83 (512)
...+..+...|.+.|++++|++.|+++. +.++.+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 3467788899999999999999999864 3478899999999999999999999999998854 22456788888999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCh-------------------------------------h-----------------
Q 043142 84 SALSAIEEGRRIHEDVIRNKWETDV-------------------------------------F----------------- 109 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~-------------------------------------~----------------- 109 (512)
...|++++|.+.++.+ .....+.. .
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 9999999999998633 21111000 0
Q ss_pred -------------HHHHHHHHHHhC--------CChHHHHHHHHhhhhCCCCh--------hHHHHHHHHHhccCChHHH
Q 043142 110 -------------VGAALIDMYAKC--------SCVVNARQVFDKILERDPSE--------ATLVTVISASADIAALPQG 160 (512)
Q Consensus 110 -------------~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~pd~--------~t~~~ll~~~~~~~~~~~a 160 (512)
....+...+... |++++|..+|+++.+.+|+. .++..+...+...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 222232222222 47899999999999988874 2466667778889999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCC
Q 043142 161 RELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEV 237 (512)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 237 (512)
...+..+.+.. |+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|++.....
T Consensus 263 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 263 QVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 99999999875 4478899999999999999999999998753 456789999999999999999999999999887
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC----CCCC----C
Q 043142 238 QPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM----RVKP----D 308 (512)
Q Consensus 238 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p----~ 308 (512)
+.+...+..+...+...|++++|..+++.+.+. .| +...+..+...|.+.|++++|...++++ +..+ .
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 766788999999999999999999999999865 45 6778999999999999999999999887 1111 2
Q ss_pred HhHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 309 PGVWGALLNSCKLH----------GHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 309 ~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
...+..+...+... |++++|...++++++..|.++.++..++.+|.+.|++++|.+.+++..+...
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 22344555667777 9999999999999999999999999999999999999999999999987653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-21 Score=198.44 Aligned_cols=345 Identities=12% Similarity=-0.019 Sum_probs=288.5
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHccCC---CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC--------
Q 043142 4 GFHPVLATKLVHLYSACDCLHNAHQLFDRIP---QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD-------- 72 (512)
Q Consensus 4 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------- 72 (512)
.||+.++..+...|.+.|++++|++.|+++. +.+..+|..+..+|.+.|++++|+..|+++...+...+
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 4788999999999999999999999999864 34678999999999999999999999999987642110
Q ss_pred ----------------------------------------------------------------------cchHHHHHHH
Q 043142 73 ----------------------------------------------------------------------NFTFPFALKA 82 (512)
Q Consensus 73 ----------------------------------------------------------------------~~t~~~ll~~ 82 (512)
...+......
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence 1111222222
Q ss_pred Hh---ccCChHHHHHHHHHHHH-----hCC--------CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHH
Q 043142 83 CS---ALSAIEEGRRIHEDVIR-----NKW--------ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVT 146 (512)
Q Consensus 83 ~~---~~~~~~~a~~~~~~~~~-----~g~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ 146 (512)
+. +.|++++|...++.+++ ..- +.+..++..+...|.+.|++++|...|+++.+.+|+..++..
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 275 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIY 275 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHH
Confidence 22 37999999999999988 311 234567888999999999999999999999998888667888
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCCh
Q 043142 147 VISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHS 223 (512)
Q Consensus 147 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 223 (512)
+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++
T Consensus 276 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 354 (514)
T 2gw1_A 276 MALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKF 354 (514)
T ss_dssp HHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCH
Confidence 8999999999999999999998865 45677899999999999999999999998753 3567899999999999999
Q ss_pred HHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhc---cCChHHH
Q 043142 224 TKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS----VQHYTCMVDLLGH---SGRLDEA 296 (512)
Q Consensus 224 ~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A 296 (512)
++|+..|+++.+..+.+..++..+...+...|++++|...++.+.+...-.|+ ...+..+...|.+ .|++++|
T Consensus 355 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A 434 (514)
T 2gw1_A 355 DDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEA 434 (514)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHH
Confidence 99999999998877767788899999999999999999999998764322222 3489999999999 9999999
Q ss_pred HHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 043142 297 CDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVIL 349 (512)
Q Consensus 297 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 349 (512)
...++++ ...| +..+|..+...+...|++++|...++++++.+|.++..+..+
T Consensus 435 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 435 TNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999987 3334 466889999999999999999999999999999887666554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-20 Score=179.59 Aligned_cols=312 Identities=13% Similarity=0.062 Sum_probs=223.3
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDM 117 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 117 (512)
+..|..+...+...|++++|+..|+++.... +.+..++..+...+...|++++|...++.+++.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4566777777788888888888888877643 2234567777777778888888888888877764 4466777788888
Q ss_pred HHhCCChHHHHHHHHhhhhCCC---Chh-HHHHH------------HHHHhccCChHHHHHHHHHHHHcCCCCchHHHHH
Q 043142 118 YAKCSCVVNARQVFDKILERDP---SEA-TLVTV------------ISASADIAALPQGRELHGFSWRHRFELNVKVKTA 181 (512)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~~p---d~~-t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 181 (512)
|.+.|++++|...|+++.+.+| +.. .+..+ ...+...|++++|...+..+.+.. +.+..++..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 8888888888888888888777 433 23333 356677777888888877777654 445677777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHH------------H
Q 043142 182 LVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFV------------G 246 (512)
Q Consensus 182 li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~------------~ 246 (512)
+...|.+.|++++|...|+.+.+ .+...|..+...|...|++++|...|++..+..+.+...+. .
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877654 24567777888888888888888888888766553333332 2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-h----hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 043142 247 VLSACSRGGLFDEGRMFFESMVRDYHIDPS-V----QHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSC 319 (512)
Q Consensus 247 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 319 (512)
+...+...|++++|...++.+.+. .|+ . ..+..+...|.+.|++++|...+++. ...| +..+|..+...+
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 355677788888888888887654 343 2 23445677788888888888888776 3334 556778888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 043142 320 KLHGHVKLAELALEKLIELEPHDAGNYVILSNIYAR 355 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 355 (512)
...|++++|...++++++.+|.++..+..+..++..
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 888888888888888888888877777666665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-19 Score=171.99 Aligned_cols=297 Identities=8% Similarity=-0.000 Sum_probs=253.5
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCC-ChhHHHHHHHHH
Q 043142 73 NFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDP-SEATLVTVISAS 151 (512)
Q Consensus 73 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p-d~~t~~~ll~~~ 151 (512)
...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|+++.+.+| +...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3456777888899999999999999999886 56788999999999999999999999999999888 456788889999
Q ss_pred hccCChHHHHHHHHHHHHcCCC--CchHHHHHH------------HHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHH
Q 043142 152 ADIAALPQGRELHGFSWRHRFE--LNVKVKTAL------------VDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMI 214 (512)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l------------i~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li 214 (512)
...|++++|...+..+.+.... .+...+..+ ...+...|++++|...|+++.+ .+...|..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999886420 344555544 5889999999999999998753 4567899999
Q ss_pred HHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-hhHHH------------
Q 043142 215 TGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS-VQHYT------------ 281 (512)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~------------ 281 (512)
..|...|++++|+..+++.....+.+..++..+...+...|++++|...++...+. .|+ ...+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887778889999999999999999999999999854 453 33332
Q ss_pred HHHHHHhccCChHHHHHHHHhC-CCCCCHh-----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 043142 282 CMVDLLGHSGRLDEACDLIMQM-RVKPDPG-----VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYAR 355 (512)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 355 (512)
.+...+.+.|++++|...++++ ...|+.. .+..+...+...|++++|...++++++.+|.++.++..++.+|..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3366799999999999999987 3344432 355677889999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHhCC
Q 043142 356 AANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 356 ~g~~~~a~~~~~~m~~~g 373 (512)
.|++++|.+.+++..+..
T Consensus 319 ~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp TTCHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 999999999999998654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-19 Score=169.25 Aligned_cols=287 Identities=13% Similarity=0.068 Sum_probs=188.4
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
++..+..+...+...|++++|+++|+++.... +.+...+..++..+...|++++|..++..+++.. +.+..++..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 45555666666666677777777776666542 1233345555566666666666666666666654 345556666666
Q ss_pred HHHhCC-ChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 043142 117 MYAKCS-CVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVA 195 (512)
Q Consensus 117 ~~~~~g-~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 195 (512)
.|...| ++++|.+.|+++.+.+|+ +...+..+...|...|++++|
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~----------------------------------~~~~~~~l~~~~~~~~~~~~A 144 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT----------------------------------YGPAWIAYGHSFAVESEHDQA 144 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT----------------------------------CTHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc----------------------------------cHHHHHHHHHHHHHccCHHHH
Confidence 666666 666666666666655543 334455555555666666666
Q ss_pred HHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 043142 196 RNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYH 272 (512)
Q Consensus 196 ~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 272 (512)
...|+++.+ .+...|..+...|...|++++|...|++.....+.+...+..+...+...|++++|...++.+.+...
T Consensus 145 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 145 MAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp HHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 666655432 22455555666677777777777777777666555666777777777777777777777777764321
Q ss_pred -------CCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 273 -------IDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 273 -------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
...+...+..+...|.+.|++++|...+++. ...| +...|..+...+...|++++|.+.++++++.+|+++
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence 1224567788888888888888888888776 2233 455788888888888899999999998888888888
Q ss_pred chHHHHHHHH-HhccCh
Q 043142 344 GNYVILSNIY-ARAANW 359 (512)
Q Consensus 344 ~~~~~l~~~~-~~~g~~ 359 (512)
..+..+..++ ...|+.
T Consensus 305 ~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 305 FSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHhCch
Confidence 8888888877 444543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.2e-19 Score=179.39 Aligned_cols=340 Identities=11% Similarity=0.037 Sum_probs=269.8
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHccCC---CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCC------------
Q 043142 5 FHPVLATKLVHLYSACDCLHNAHQLFDRIP---QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGL------------ 69 (512)
Q Consensus 5 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------ 69 (512)
.++.++..+...|.+.|++++|++.|+++. +.+..+|..+...+...|++++|+..|+.+....-
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 136 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER 136 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHH
Confidence 467889999999999999999999999864 34778999999999999999999999964421100
Q ss_pred ------------------------CCCcch--------------------------HHHHHHHHhc------------cC
Q 043142 70 ------------------------VPDNFT--------------------------FPFALKACSA------------LS 87 (512)
Q Consensus 70 ------------------------~p~~~t--------------------------~~~ll~~~~~------------~~ 87 (512)
.|+... +..+..++.. .+
T Consensus 137 ~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 216 (537)
T 3fp2_A 137 NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAND 216 (537)
T ss_dssp HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 011000 0001111111 14
Q ss_pred ChHHHHHHHHHHHHhCCCCCh-------hHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHH
Q 043142 88 AIEEGRRIHEDVIRNKWETDV-------FVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQG 160 (512)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a 160 (512)
++++|.++++.+++.. +.+. .++..+...+...|++++|...|+++.+.+|+..++..+...+...|++++|
T Consensus 217 ~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHH
Confidence 7888999999988764 2232 3566777888999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCC
Q 043142 161 RELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEV 237 (512)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 237 (512)
...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|+..|+++....
T Consensus 296 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 296 FKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999998875 45678899999999999999999999998753 346789999999999999999999999999887
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHhcc----------CChHHHHHHHHhC
Q 043142 238 QPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP----SVQHYTCMVDLLGHS----------GRLDEACDLIMQM 303 (512)
Q Consensus 238 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~----------g~~~~A~~~~~~m 303 (512)
+.+...+..+...+...|++++|...|+.+.+...-.+ ....+..+...|.+. |++++|...+++.
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 77778889999999999999999999999875421111 122344556677777 9999999999987
Q ss_pred -CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 043142 304 -RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNY 346 (512)
Q Consensus 304 -~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 346 (512)
...| +...|..+...+...|++++|.+.|+++++..|.++...
T Consensus 455 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 455 CELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 3344 456899999999999999999999999999999876543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-18 Score=165.47 Aligned_cols=264 Identities=13% Similarity=0.071 Sum_probs=221.3
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 043142 105 ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALV 183 (512)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 183 (512)
+.+..++..+...+...|++++|.++|+++.+.+|+. ..+..++..+...|++++|...+..+.+.. +.+..++..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 4556666777777777788888888888777776644 345556667777788888888887777754 44677888899
Q ss_pred HHHHhcC-CHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHH
Q 043142 184 DMYAKCG-LVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDE 259 (512)
Q Consensus 184 ~~y~~~g-~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~ 259 (512)
..|...| ++++|...|++..+. +...|..+...|...|++++|+..|++..+..+.+...+..+...+...|++++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 9999999 999999999987643 467899999999999999999999999998877666777789999999999999
Q ss_pred HHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CC----------CCCHhHHHHHHHHHHHcCCHHH
Q 043142 260 GRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RV----------KPDPGVWGALLNSCKLHGHVKL 327 (512)
Q Consensus 260 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~ll~~~~~~g~~~~ 327 (512)
|...++.+.+ ..| +...+..+...|.+.|++++|...+++. .. ..+..+|..+...+...|++++
T Consensus 178 A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 178 AERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999974 355 6788999999999999999999999877 11 2335689999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 328 AELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 328 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
|...++++++..|.++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999987654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=177.82 Aligned_cols=310 Identities=14% Similarity=0.140 Sum_probs=149.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSA 88 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 88 (512)
..+.|+ -+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|+
T Consensus 8 a~~~ll---~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 8 AVQVLI---EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH---HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCC
Confidence 344444 37789999999999997664 9999999999999999999999753 577799999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSW 168 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 168 (512)
+++|...+....+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|..+...|...|.+++|...|..+
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp ----------------------------------CHHHHTTTTTC-----C----------------CTTTHHHHHHHT-
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 99999988877764 46688899999999999999999988853 77889999999999999999999999976
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHH
Q 043142 169 RHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVL 248 (512)
Q Consensus 169 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll 248 (512)
..|..|++++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. .++.-...++
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----~~ad~l~~lv 214 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELI 214 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT----TCHHHHHHHH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH----hCHhhHHHHH
Confidence 37899999999999999999999999 388999999999999999999966555422 2333355788
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhcc--CChHHHHHHHHh-CCCCC------CHhHHHHHHHH
Q 043142 249 SACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHS--GRLDEACDLIMQ-MRVKP------DPGVWGALLNS 318 (512)
Q Consensus 249 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--g~~~~A~~~~~~-m~~~p------~~~~~~~ll~~ 318 (512)
..|.+.|.+++|..+++... ++++ ....|+-|.-+|++- +++.+.++.|.. +.+.| +...|..+.-.
T Consensus 215 ~~Yek~G~~eEai~lLe~aL---~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHT---TSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHh---CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999886 5665 667777777777654 566677766643 33333 45689999999
Q ss_pred HHHcCCHHHHHHHHHHHHhc------------CCCCCchHHHHHHHHH
Q 043142 319 CKLHGHVKLAELALEKLIEL------------EPHDAGNYVILSNIYA 354 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~------------~p~~~~~~~~l~~~~~ 354 (512)
|...++++.|....-+-... .+.+...|.-.+..|.
T Consensus 292 y~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 292 YDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 99999999887654332211 3556666666666665
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-19 Score=171.85 Aligned_cols=300 Identities=12% Similarity=0.016 Sum_probs=206.4
Q ss_pred HHhcCCchHHHH-HHHHHHHCCC-CC--CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043142 48 YAWNGPYEVAIE-LYYRLLEIGL-VP--DNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC 123 (512)
Q Consensus 48 ~~~~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (512)
+...|++++|++ .|++...... .| +...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334567777777 7765543211 11 23456667777777788888888887777764 4566677777777777888
Q ss_pred hHHHHHHHHhhhhCCCC-hhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 043142 124 VVNARQVFDKILERDPS-EATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQL 202 (512)
Q Consensus 124 ~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 202 (512)
+++|...|+++.+.+|+ ..++..+...+...|++++|...+..+.+.... +...+..+. .....
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~------- 178 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAE-------EGAGG------- 178 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH-------HHhhh-------
Confidence 88888877777766653 345555566666666666666666666554321 111111000 00000
Q ss_pred CCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhH
Q 043142 203 REKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQP--DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQH 279 (512)
Q Consensus 203 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~ 279 (512)
... ...+..+...+ ..|++++|+..|+++....+. +..++..+...+...|++++|...|+.+.+. .| +...
T Consensus 179 ~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~ 253 (368)
T 1fch_A 179 AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLL 253 (368)
T ss_dssp --------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHH
Confidence 000 01111223333 889999999999999887763 7889999999999999999999999999754 45 6788
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------CchH
Q 043142 280 YTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHD-----------AGNY 346 (512)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~ 346 (512)
+..+...|.+.|++++|+..++++ ...| +...|..+...+...|++++|...++++++..|.+ ..+|
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 999999999999999999999887 3344 46689999999999999999999999999988776 7899
Q ss_pred HHHHHHHHhccChhHHHHHHHH
Q 043142 347 VILSNIYARAANWEGVAKLRKL 368 (512)
Q Consensus 347 ~~l~~~~~~~g~~~~a~~~~~~ 368 (512)
..++.+|...|++++|..++++
T Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 334 STLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHhCChHhHHHhHHH
Confidence 9999999999999999998763
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-17 Score=165.63 Aligned_cols=363 Identities=10% Similarity=0.017 Sum_probs=250.1
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHccCC------------CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHC-----C-
Q 043142 7 PVLATKLVHLYSACDCLHNAHQLFDRIP------------QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEI-----G- 68 (512)
Q Consensus 7 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 68 (512)
...||.|...|...|+.++|++.|++.. ....++|+.+...|...|++++|...|++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4578999999999999999999987642 124678999999999999999999999887542 1
Q ss_pred CCCC-cchHHHHHHHHhc--cCChHHHHHHHHHHHHhCCCCChhHHHHHHHH---HHhCCChHHHHHHHHhhhhCCCCh-
Q 043142 69 LVPD-NFTFPFALKACSA--LSAIEEGRRIHEDVIRNKWETDVFVGAALIDM---YAKCSCVVNARQVFDKILERDPSE- 141 (512)
Q Consensus 69 ~~p~-~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~pd~- 141 (512)
..++ ..++.....++.. .+++++|.+.|++.++.. |.++..+..+... +...++.++|++.|++..+.+|+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 1122 2345555444444 457899999999999885 4456666666555 445688889999999998888754
Q ss_pred hHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CchHHHHHH
Q 043142 142 ATLVTVISASAD----IAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE--K-RVVSWNAMI 214 (512)
Q Consensus 142 ~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li 214 (512)
.++..+...+.. .++.++|.+.++...+.. +.+..++..+...|.+.|++++|...|++..+ | +..+|..+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 445555444443 467889999999888765 55677888999999999999999999998763 3 345666666
Q ss_pred HHHHHc-------------------CChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 043142 215 TGYAMH-------------------GHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP 275 (512)
Q Consensus 215 ~~~~~~-------------------g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 275 (512)
..|... +..++|...|++.....+.+..++..+...+...|++++|...|++..+. .|
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~ 365 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK---EL 365 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CC
Confidence 555332 33567888888888777766777888999999999999999999998743 34
Q ss_pred Chh----HHHHHHH-HHhccCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 043142 276 SVQ----HYTCMVD-LLGHSGRLDEACDLIMQM-RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVIL 349 (512)
Q Consensus 276 ~~~----~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 349 (512)
+.. .+..+.. .+.+.|+.++|+..+++. .+.|+...+... .+.+.+++++.++.+|.++.+|..|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 322 2233332 235678999999999876 566765443322 3456677888889999999999999
Q ss_pred HHHHHhccChhHHHHHHHHHHhCCCccCCceeeE
Q 043142 350 SNIYARAANWEGVAKLRKLMIDRGIKKSIACSWI 383 (512)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 383 (512)
..+|...|++++|.+.|++..+.+.......+|+
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHCC-----------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 9999999999999999999988765543444564
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.9e-18 Score=162.89 Aligned_cols=296 Identities=13% Similarity=0.041 Sum_probs=181.7
Q ss_pred HHccCChHHHHH-HHccCCC-----C--CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC
Q 043142 17 YSACDCLHNAHQ-LFDRIPQ-----R--NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSA 88 (512)
Q Consensus 17 y~~~g~~~~A~~-~f~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 88 (512)
|.-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888988 8876432 1 45678899999999999999999999999864 2355688888999999999
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSW 168 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 168 (512)
+++|.+.++.+++.. +.+..++..+...|.+.|++++|.+.|+++...+|+........... ..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~------~~--------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG------AG--------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH------hh---------
Confidence 999999999999886 56888999999999999999999999999999887654322110000 00
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHH
Q 043142 169 RHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE--K---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHIT 243 (512)
Q Consensus 169 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t 243 (512)
...+ ...+..+...+ +.|++++|...|+++.+ | +...|..+...|...|++++|+..|+++....+.+..+
T Consensus 178 --~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 253 (368)
T 1fch_A 178 --GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253 (368)
T ss_dssp -----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH
Confidence 0000 00111112222 45555555555555431 1 23455555555666666666666666655554444555
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC------------CH
Q 043142 244 FVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP------------DP 309 (512)
Q Consensus 244 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p------------~~ 309 (512)
+..+...+...|++++|...|+.+.+. .| +...+..+...|.+.|++++|...++++ ...| ..
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 566666666666666666666665533 23 4455566666666666666666666554 1111 13
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043142 310 GVWGALLNSCKLHGHVKLAELALEKLI 336 (512)
Q Consensus 310 ~~~~~ll~~~~~~g~~~~A~~~~~~~~ 336 (512)
.+|..+..++...|+.++|..++++.+
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 466666666666666666666655443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=167.88 Aligned_cols=269 Identities=12% Similarity=-0.027 Sum_probs=186.5
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHH
Q 043142 73 NFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS-EATLVTVISAS 151 (512)
Q Consensus 73 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~ 151 (512)
...+..+...+.+.|++++|.+.++.+++.. +.+..++..+...|.+.|++++|+..|+++.+.+|+ ..++..+...+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3457777777777888888888888877765 456777777888888888888888888877776654 33455555555
Q ss_pred hccCChHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHH
Q 043142 152 ADIAALPQGRELHGFSWRHRFELN-VKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLF 230 (512)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 230 (512)
...|++++|...+..+.+.. |+ ...+..+. .....+..+...|...|++++|+..|
T Consensus 144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNKK---------------------GSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHCC----------------------------------------CCHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC--ccchHHHhhhc---------------------cchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 55555555555555554432 11 00000000 01223344567777888888888888
Q ss_pred HHhHHCCCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCC
Q 043142 231 EKMKDEVQP--DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK 306 (512)
Q Consensus 231 ~~m~~~~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 306 (512)
+++....+. +..++..+...+...|++++|...|+.+.+. .| +..++..+...|.+.|++++|+..++++ ...
T Consensus 201 ~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 201 LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 888777663 7888888888888888888888888888754 34 6778888888888899999998888877 334
Q ss_pred CC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhccChhHHHHHHHH
Q 043142 307 PD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPH------------DAGNYVILSNIYARAANWEGVAKLRKL 368 (512)
Q Consensus 307 p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (512)
|+ ..+|..+...+...|++++|...++++++..|. +...|..+..++...|+.+.+.++.++
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 54 568888999999999999999999999987765 367888999999999999988877654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-15 Score=152.36 Aligned_cols=351 Identities=14% Similarity=0.006 Sum_probs=293.9
Q ss_pred chhHHHHHHHHHHc----cCChHHHHHHHccCCC-CCchHHHHHHHHHHh----cCCchHHHHHHHHHHHCCCCCCcchH
Q 043142 6 HPVLATKLVHLYSA----CDCLHNAHQLFDRIPQ-RNLFLWNVLIRAYAW----NGPYEVAIELYYRLLEIGLVPDNFTF 76 (512)
Q Consensus 6 ~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 76 (512)
|+.....|...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 56677778888887 8999999999987644 477889999999998 899999999999998865 55667
Q ss_pred HHHHHHHhc----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----CCChHHHHHHHHhhhhCCCChhHHHHHH
Q 043142 77 PFALKACSA----LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK----CSCVVNARQVFDKILERDPSEATLVTVI 148 (512)
Q Consensus 77 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~pd~~t~~~ll 148 (512)
..+...+.. .+++++|.+.|+...+.| +...+..|..+|.. .+++++|.+.|++..+.+ +...+..+.
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-~~~a~~~Lg 190 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG-NVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHH
Confidence 777777777 789999999999998876 56778888889987 789999999999998874 677788888
Q ss_pred HHHhc----cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Q 043142 149 SASAD----IAALPQGRELHGFSWRHRFELNVKVKTALVDMYAK----CGLVKVARNLFEQLREK-RVVSWNAMITGYAM 219 (512)
Q Consensus 149 ~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~ 219 (512)
..+.. .++.++|...+....+.| +...+..|..+|.. .+++++|...|++..+. +..++..+...|..
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~ 267 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQ 267 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Confidence 88876 899999999999999876 56678888888886 89999999999987654 46777778888887
Q ss_pred ----cCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc
Q 043142 220 ----HGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRG-----GLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHS 290 (512)
Q Consensus 220 ----~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 290 (512)
.++.++|+..|++..+.+. ...+..+...+... +++++|...|+...+. + +...+..|..+|.+.
T Consensus 268 g~~~~~d~~~A~~~~~~a~~~~~--~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 268 GLAGAKEPLKALEWYRKSAEQGN--SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRL 341 (490)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhC
Confidence 8999999999999887654 44556677777766 8999999999999753 2 456777888888776
Q ss_pred C---ChHHHHHHHHhCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----ccCh
Q 043142 291 G---RLDEACDLIMQMRVKPDPGVWGALLNSCKL----HGHVKLAELALEKLIELEPHDAGNYVILSNIYAR----AANW 359 (512)
Q Consensus 291 g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~ 359 (512)
| +.++|+++|++.-...+...+..|...|.. .+++++|...|+++.+.+ ++.++..|..+|.. .+++
T Consensus 342 g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCH
Confidence 6 789999999888333577788899999988 899999999999999875 46788899999998 8999
Q ss_pred hHHHHHHHHHHhCCC
Q 043142 360 EGVAKLRKLMIDRGI 374 (512)
Q Consensus 360 ~~a~~~~~~m~~~g~ 374 (512)
++|...|++..+.+.
T Consensus 420 ~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 420 VQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCC
Confidence 999999999988774
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-17 Score=159.99 Aligned_cols=262 Identities=12% Similarity=0.046 Sum_probs=166.3
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
+...|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|.+.++++++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 56679999999999999999999999998854 2356689999999999999999999999999886 567889999999
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCChhH-HH----------HHHHHHhccCChHHHHHHHHHHHHcCCC-CchHHHHHHHH
Q 043142 117 MYAKCSCVVNARQVFDKILERDPSEAT-LV----------TVISASADIAALPQGRELHGFSWRHRFE-LNVKVKTALVD 184 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd~~t-~~----------~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~ 184 (512)
.|.+.|++++|...|+++.+.+|+... +. .+...+...|++++|...++.+.+.... .+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------- 214 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD------- 214 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHH-------
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH-------
Confidence 999999999999999999887764322 11 2234444455555555555555443211 0334
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 043142 185 MYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFF 264 (512)
Q Consensus 185 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 264 (512)
+|..+...|...|++++|+..|++..+..+.+..++..+..++...|++++|...|
T Consensus 215 ------------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (365)
T 4eqf_A 215 ------------------------LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270 (365)
T ss_dssp ------------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444555555555555555555554444444445555555555555555555555
Q ss_pred HHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-------------CHhHHHHHHHHHHHcCCHHHHH
Q 043142 265 ESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-------------DPGVWGALLNSCKLHGHVKLAE 329 (512)
Q Consensus 265 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~~~~~~~ll~~~~~~g~~~~A~ 329 (512)
+.+.+. .| +...+..+..+|.+.|++++|...|+++ ...| +...|..+..++...|+.+.+.
T Consensus 271 ~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 271 TRALEI---QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhc---CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 555432 23 3445555555555555555555555544 0011 2346666666666666666666
Q ss_pred HHHHH
Q 043142 330 LALEK 334 (512)
Q Consensus 330 ~~~~~ 334 (512)
.+.++
T Consensus 348 ~~~~~ 352 (365)
T 4eqf_A 348 AANLG 352 (365)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 55544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-17 Score=157.42 Aligned_cols=332 Identities=11% Similarity=0.035 Sum_probs=176.9
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHh
Q 043142 5 FHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACS 84 (512)
Q Consensus 5 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 84 (512)
+++.+|+.|..++.+.|++++|++.|.+. +|...|..++.++...|++++|...++..++. .++..+.+.++.++.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 45569999999999999999999999764 57779999999999999999999977766663 456788999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHH
Q 043142 85 ALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELH 164 (512)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 164 (512)
+.|+++++.++++ .|+..+|+.+.+.|...|.+++|...|..+ ..|..+..++.+.|++++|.+.+
T Consensus 106 Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~ 171 (449)
T 1b89_A 106 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGA 171 (449)
T ss_dssp ---CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHH
Confidence 9999999998874 477789999999999999999999999987 36999999999999999999999
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHH
Q 043142 165 GFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITF 244 (512)
Q Consensus 165 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~ 244 (512)
..+ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|++++|+.+++.......-....|
T Consensus 172 ~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~f 244 (449)
T 1b89_A 172 RKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 244 (449)
T ss_dssp HHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHH
T ss_pred HHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHH
Confidence 988 378999999999999999999988777655 4444455688999999999999999999876655555566
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHhcCCCC------ChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHH
Q 043142 245 VGVLSACSR--GGLFDEGRMFFESMVRDYHIDP------SVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALL 316 (512)
Q Consensus 245 ~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 316 (512)
+.+.-++++ .+++.+..+.|.. +-+++| +...|.-++-.|...++++.|...+-+-+ |+..--..+.
T Consensus 245 tel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~ 319 (449)
T 1b89_A 245 TELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFK 319 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHH
Confidence 666555554 4455555555543 335555 57789999999999999999988765542 3434444555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLM 369 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 369 (512)
....+-.+.+.-.+...-.++..| ...+.|+.++...=+...+.++|++.
T Consensus 320 ~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 320 DIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp HHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 555666666655555555555444 45666777776666666666666544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=9.2e-17 Score=152.44 Aligned_cols=264 Identities=11% Similarity=-0.028 Sum_probs=164.2
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
+...|..+...+...|++++|+.+|+++.+... .+..++..+..++...|++++|.+.++.+++.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 455677888889999999999999999887532 245677788888899999999999999998875 557788888999
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCChhHHHHHH--------------HH--HhccCChHHHHHHHHHHHHcCCCCchHHHH
Q 043142 117 MYAKCSCVVNARQVFDKILERDPSEATLVTVI--------------SA--SADIAALPQGRELHGFSWRHRFELNVKVKT 180 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll--------------~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 180 (512)
.|.+.|++++|.+.|+++.+.+|+.......+ .. +...|++++|...+..+.+.. +.+.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~---- 172 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDA---- 172 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCH----
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCH----
Confidence 99999999999999999988877654322222 11 334444444444444444432 2233
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHH
Q 043142 181 ALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEG 260 (512)
Q Consensus 181 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a 260 (512)
..|..+...|...|++++|+..++++.+..+.+..++..+...+...|++++|
T Consensus 173 ---------------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 173 ---------------------------QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp ---------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------------------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 44444555555555555555555555544444445555555555555555555
Q ss_pred HHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-------------HhHHHHHHHHHHHcCCH
Q 043142 261 RMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-------------PGVWGALLNSCKLHGHV 325 (512)
Q Consensus 261 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------------~~~~~~ll~~~~~~g~~ 325 (512)
...++.+.+. .| +...+..+...|.+.|++++|.+.++++ ...|+ ...|..+...+...|++
T Consensus 226 ~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 226 LDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 5555555432 22 3445555555555555555555555544 11222 34555666666666666
Q ss_pred HHHHHHHHHHHh
Q 043142 326 KLAELALEKLIE 337 (512)
Q Consensus 326 ~~A~~~~~~~~~ 337 (512)
++|..++++.++
T Consensus 303 ~~A~~~~~~~l~ 314 (327)
T 3cv0_A 303 DLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHTTCCSH
T ss_pred HHHHHHHHHHHH
Confidence 666666555443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.7e-17 Score=150.84 Aligned_cols=272 Identities=10% Similarity=0.025 Sum_probs=197.3
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCCh--hHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHH
Q 043142 83 CSALSAIEEGRRIHEDVIRNKWETDV--FVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQG 160 (512)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a 160 (512)
....|++..|....+..... .|+. ...-.+..+|...|+++.|+..++.. ..|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc--CChhHHHHHHHHHHHcCCCcHHHH
Confidence 33456666666665544322 2322 23344566777777777777666542 234445666666777777777777
Q ss_pred HHHHHHHHHcCC-CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCC
Q 043142 161 RELHGFSWRHRF-ELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQP 239 (512)
Q Consensus 161 ~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 239 (512)
.+.++.++..+. +.+...+..+..+|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|...|+++.+..+.
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 162 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDED 162 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC
Confidence 777777777654 44566777788999999999999999998 456788899999999999999999999999877542
Q ss_pred CHHHH--HHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHH
Q 043142 240 DHITF--VGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGAL 315 (512)
Q Consensus 240 ~~~t~--~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 315 (512)
+..+. ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|+..+++. ...| +..+|..+
T Consensus 163 ~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 22111 22334445668999999999999865 2347888999999999999999999999987 4445 45689999
Q ss_pred HHHHHHcCCHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHH
Q 043142 316 LNSCKLHGHVKL-AELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 316 l~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (512)
+..+...|+.++ +.++++++++.+|+++. +.+...+.+.++++..-|
T Consensus 241 ~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 241 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHc
Confidence 999999999875 67899999999999874 345556666666655433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-15 Score=154.95 Aligned_cols=399 Identities=9% Similarity=0.039 Sum_probs=275.4
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHccCCC--C-CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHH
Q 043142 4 GFHPVLATKLVHLYSACDCLHNAHQLFDRIPQ--R-NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFAL 80 (512)
Q Consensus 4 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 80 (512)
+-|..+|..++. +.+.|++++|+.+|+++.+ | +...|...+..+.+.|++++|..+|++++.. .|+...|...+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 346778999998 4789999999999999754 3 6678999999999999999999999999875 46766666666
Q ss_pred HHH-hccCChHHHHH----HHHHHHHh-CCC-CChhHHHHHHHHHHh---------CCChHHHHHHHHhhhhCCCCh---
Q 043142 81 KAC-SALSAIEEGRR----IHEDVIRN-KWE-TDVFVGAALIDMYAK---------CSCVVNARQVFDKILERDPSE--- 141 (512)
Q Consensus 81 ~~~-~~~~~~~~a~~----~~~~~~~~-g~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~pd~--- 141 (512)
... ...|+.+.|.+ +|+..++. |.. ++..+|...+....+ .|+++.|.++|++..+ .|+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~ 165 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIE 165 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHH
Confidence 432 34566666554 77776654 543 356788888887665 6899999999999988 4543
Q ss_pred hHHHHHHHH---H----------hccCChHHHHHHHHHHH------HcC---CCCc--------hHHHHHHHHHHHhc--
Q 043142 142 ATLVTVISA---S----------ADIAALPQGRELHGFSW------RHR---FELN--------VKVKTALVDMYAKC-- 189 (512)
Q Consensus 142 ~t~~~ll~~---~----------~~~~~~~~a~~~~~~~~------~~g---~~~~--------~~~~~~li~~y~~~-- 189 (512)
..|...... . ...+++..|..++.... +.. ++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 223222111 1 12345666776666532 211 2333 24666655443322
Q ss_pred --CCH----HHHHHHHHhcCC---CCchHHHHHHHHHHH-------cCChH-------HHHHHHHHhHHC-CCCCHHHHH
Q 043142 190 --GLV----KVARNLFEQLRE---KRVVSWNAMITGYAM-------HGHST-------KALDLFEKMKDE-VQPDHITFV 245 (512)
Q Consensus 190 --g~~----~~A~~~~~~m~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~-~~p~~~t~~ 245 (512)
++. +.|..+|++... .+...|...+..+.+ .|+.+ +|..+|++.... .+.+...+.
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 232 367778877653 346778888877775 68876 899999998863 334577788
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-h-hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHH-HHH
Q 043142 246 GVLSACSRGGLFDEGRMFFESMVRDYHIDPS-V-QHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLN-SCK 320 (512)
Q Consensus 246 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~-~~~ 320 (512)
.++..+.+.|++++|..+|+.+++ +.|+ . ..|..++..+.+.|++++|.++|++. ...|+ ...|..... .+.
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 888888889999999999999874 3564 2 57888888888999999999999887 33333 222322222 234
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC-ccC-CceeeEEECCEEEEEEeCCCC
Q 043142 321 LHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI-KKS-IACSWIEVKNKAHAFLSGDAS 398 (512)
Q Consensus 321 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~~~-~~~~~~~~~~~~~~~~~~~~~ 398 (512)
..|+.++|..+|+++++..|+++..|..++..+.+.|+.++|..+|++....+. .|. ....|... ..|....+.
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~----~~~e~~~G~ 478 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF----LAFESNIGD 478 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH----HHHHHHSSC
T ss_pred HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH----HHHHHHcCC
Confidence 689999999999999999999888999999999999999999999999887643 222 11134110 012222334
Q ss_pred CCChHHHHHHHHHHH
Q 043142 399 HPNCDEIYAKLKWLE 413 (512)
Q Consensus 399 ~~~~~~~~~~l~~l~ 413 (512)
......+.....+.+
T Consensus 479 ~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 479 LASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHC
Confidence 455666666655555
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-17 Score=155.01 Aligned_cols=273 Identities=11% Similarity=-0.034 Sum_probs=192.6
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHHh
Q 043142 74 FTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS-EATLVTVISASA 152 (512)
Q Consensus 74 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~ 152 (512)
..+......+...|++++|.++++.+++.. +.+..++..+...|.+.|++++|.+.|+++.+.+|+ ..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 345555666666777777777777776654 345566666667777777777777777776665543 234444444444
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHH-HH-HHHHcCChHHHHHHH
Q 043142 153 DIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAM-IT-GYAMHGHSTKALDLF 230 (512)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l-i~-~~~~~g~~~~A~~~~ 230 (512)
..|++++|...+..+.+.... +...+..+.... ++......+ .. .+...|++++|...+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC--------------------------------------CCTTSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 555555555555444443211 111111110000 000000111 22 367788899999999
Q ss_pred HHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-
Q 043142 231 EKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP- 307 (512)
Q Consensus 231 ~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p- 307 (512)
+++....+.+...+..+...+...|++++|..+++.+.+. .| +...+..+...|.+.|++++|...++++ ...|
T Consensus 162 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 162 HAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9998887778889999999999999999999999999754 45 6788999999999999999999999987 3334
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhccChhHHHHHHHHH
Q 043142 308 DPGVWGALLNSCKLHGHVKLAELALEKLIELEPH------------DAGNYVILSNIYARAANWEGVAKLRKLM 369 (512)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 369 (512)
+..+|..+...+...|++++|.+.++++++..|. ++..+..+..+|.+.|++++|..++++.
T Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4668999999999999999999999999999988 6789999999999999999999998754
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-15 Score=149.61 Aligned_cols=333 Identities=11% Similarity=-0.039 Sum_probs=275.4
Q ss_pred chhHHHHHHHHHHc----cCChHHHHHHHccCCC-CCchHHHHHHHHHHh----cCCchHHHHHHHHHHHCCCCCCcchH
Q 043142 6 HPVLATKLVHLYSA----CDCLHNAHQLFDRIPQ-RNLFLWNVLIRAYAW----NGPYEVAIELYYRLLEIGLVPDNFTF 76 (512)
Q Consensus 6 ~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 76 (512)
++..+..|..+|.. .++.++|.+.|++..+ .+..++..|...|.. .+++++|+..|++..+.| +...+
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 150 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQ 150 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45677888889988 8999999999998654 477888889999988 789999999999998875 45667
Q ss_pred HHHHHHHhc----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----CCChHHHHHHHHhhhhCCCChhHHHHHH
Q 043142 77 PFALKACSA----LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK----CSCVVNARQVFDKILERDPSEATLVTVI 148 (512)
Q Consensus 77 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~pd~~t~~~ll 148 (512)
..+...+.. .++.++|.+.|++..+.| +...+..|..+|.. .++.++|.+.|++..+.+ +..++..+.
T Consensus 151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg 226 (490)
T 2xm6_A 151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG-DELGQLHLA 226 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-CHHHHHHHH
Confidence 777777776 789999999999999875 67888889999998 899999999999998775 566777777
Q ss_pred HHHhc----cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Q 043142 149 SASAD----IAALPQGRELHGFSWRHRFELNVKVKTALVDMYAK----CGLVKVARNLFEQLREK-RVVSWNAMITGYAM 219 (512)
Q Consensus 149 ~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~ 219 (512)
..+.. .++.++|...+....+.| +...+..|..+|.. .++.++|...|++..+. +..++..+...|..
T Consensus 227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDK 303 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Confidence 77765 789999999999998875 45677788888888 89999999999998754 46778888888888
Q ss_pred c-----CChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc--
Q 043142 220 H-----GHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGG---LFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGH-- 289 (512)
Q Consensus 220 ~-----g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-- 289 (512)
. ++.++|+..|++..+.+.+ ..+..+...+...| +.++|...|++..+. .+...+..|..+|..
T Consensus 304 ~~~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~ 377 (490)
T 2xm6_A 304 GAEGVAKNREQAISWYTKSAEQGDA--TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGK 377 (490)
T ss_dssp CBTTBCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTS
T ss_pred CCCCCcCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCC
Confidence 7 8999999999999887643 45566666676656 789999999999753 367788889999988
Q ss_pred --cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHH
Q 043142 290 --SGRLDEACDLIMQMRVKPDPGVWGALLNSCKL----HGHVKLAELALEKLIELEPH---DAGNYVILSNIYA 354 (512)
Q Consensus 290 --~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 354 (512)
.+++++|..+|++.-...+...+..|...|.. .++.++|...|+++.+.+|+ ++.....|..++.
T Consensus 378 g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 378 GVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 89999999999988323467788889998988 89999999999999999854 5556555555544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.3e-16 Score=144.72 Aligned_cols=247 Identities=10% Similarity=0.012 Sum_probs=205.9
Q ss_pred HHHHhCCChHHHHHHHHhhhhCCCCh--hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 043142 116 DMYAKCSCVVNARQVFDKILERDPSE--ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVK 193 (512)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 193 (512)
.-....|++..|+..+++....+|+. .....+..++...|+++.|...++. .-+|+..++..+...|...|+.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 44556899999999999988877765 3556678899999999999876643 24667888899999999999999
Q ss_pred HHHHHHHhcCC----C-CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 194 VARNLFEQLRE----K-RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 194 ~A~~~~~~m~~----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
+|.+.|+++.. | +...+..+...|.+.|++++|++.+++ +.+...+..++..+.+.|++++|...|+.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999998642 4 356677788999999999999999987 4677788899999999999999999999998
Q ss_pred HhcCCCCChhH---HHHHHHHHhccCChHHHHHHHHhC--CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 269 RDYHIDPSVQH---YTCMVDLLGHSGRLDEACDLIMQM--RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 269 ~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
+. .|+... ...++..+...|++++|..+|+++ ....+...|+.+..++...|++++|+..++++++.+|.++
T Consensus 158 ~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 158 DQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 65 465432 233445566679999999999998 2334667999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhccChhH-HHHHHHHHHhCCC
Q 043142 344 GNYVILSNIYARAANWEG-VAKLRKLMIDRGI 374 (512)
Q Consensus 344 ~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~g~ 374 (512)
.++..++..+...|+.++ +.++++++.+...
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999976 5789988876543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.1e-18 Score=173.71 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=119.8
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHccCC-------CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 043142 7 PVLATKLVHLYSACDCLHNAHQLFDRIP-------QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFA 79 (512)
Q Consensus 7 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 79 (512)
..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3589999999999999999999997753 589999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhC---CCChhHHHHHHHHHhccC
Q 043142 80 LKACSALSAI-EEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILER---DPSEATLVTVISASADIA 155 (512)
Q Consensus 80 l~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~pd~~t~~~ll~~~~~~~ 155 (512)
|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+.-. .|...|...|...+++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999998766644333333332222111 012334445555565544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-17 Score=169.29 Aligned_cols=127 Identities=13% Similarity=0.141 Sum_probs=110.4
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHH
Q 043142 172 FELNVKVKTALVDMYAKCGLVKVARNLFEQLR-------EKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHIT 243 (512)
Q Consensus 172 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t 243 (512)
...-..+||+||++|+++|++++|.++|++|. .+|+++||+||.+|++.|+.++|.++|++|.+.|+ ||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997764 57999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHH
Q 043142 244 FVGVLSACSRGGLF-DEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDL 299 (512)
Q Consensus 244 ~~~ll~a~~~~g~~-~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 299 (512)
|++||.++++.|+. ++|.++|++|.++ |+.||..+|++++....+.+-++...++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 99999999999984 7899999999765 9999999999999877776544444443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=6.4e-14 Score=142.60 Aligned_cols=331 Identities=12% Similarity=0.104 Sum_probs=244.7
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 043142 36 RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD-NFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAAL 114 (512)
Q Consensus 36 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 114 (512)
.|..+|..++. +.+.|++++|..+|+++.+. .|+ ...|...+..+.+.|+++.|..+|+++++.. |+...|..+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 37889999998 58899999999999999875 354 4578889999999999999999999999874 577788877
Q ss_pred HHH-HHhCCChHHHHH----HHHhhhhC---CC-ChhHHHHHHHHHhc---------cCChHHHHHHHHHHHHcCCCCch
Q 043142 115 IDM-YAKCSCVVNARQ----VFDKILER---DP-SEATLVTVISASAD---------IAALPQGRELHGFSWRHRFELNV 176 (512)
Q Consensus 115 i~~-~~~~g~~~~A~~----~~~~m~~~---~p-d~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~ 176 (512)
+.. ....|+.++|.+ +|++.... +| +...|...+..... .|+++.|..+|+.+++.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 753 345688777765 77766542 33 34456666655443 68899999999999883212222
Q ss_pred HHHHHHHHHH-------------HhcCCHHHHHHHHHh------cCC-------CC--------chHHHHHHHHHHHc--
Q 043142 177 KVKTALVDMY-------------AKCGLVKVARNLFEQ------LRE-------KR--------VVSWNAMITGYAMH-- 220 (512)
Q Consensus 177 ~~~~~li~~y-------------~~~g~~~~A~~~~~~------m~~-------~~--------~~~~~~li~~~~~~-- 220 (512)
.+|....... .+.++++.|..++.. ..+ ++ ...|...+.-...+
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 3444332211 134567778777765 111 11 24566655433332
Q ss_pred --CCh----HHHHHHHHHhHHCCCCCHHHHHHHHHHHhc-------CCCHH-------HHHHHHHHHHHhcCCCC-ChhH
Q 043142 221 --GHS----TKALDLFEKMKDEVQPDHITFVGVLSACSR-------GGLFD-------EGRMFFESMVRDYHIDP-SVQH 279 (512)
Q Consensus 221 --g~~----~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~-------~g~~~-------~a~~~~~~~~~~~~~~p-~~~~ 279 (512)
++. .+|..+|++.....+.+...|...+..+.+ .|+++ +|..+|++.++ .+.| +...
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~--~~~p~~~~l 323 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS--TLLKKNMLL 323 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT--TTCSSCHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH--HhCcccHHH
Confidence 222 478889999988766677888888877765 79987 89999999873 2456 6889
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCCCH--hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH-HHh
Q 043142 280 YTCMVDLLGHSGRLDEACDLIMQM-RVKPDP--GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNI-YAR 355 (512)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~ 355 (512)
|..++..+.+.|++++|..+|+++ ...|+. ..|..++..+.+.|++++|..+|+++++..|.+...|...+.. +..
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 999999999999999999999987 455643 4899999999999999999999999999988776666655544 346
Q ss_pred ccChhHHHHHHHHHHhCC
Q 043142 356 AANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 356 ~g~~~~a~~~~~~m~~~g 373 (512)
.|++++|..+|++..+..
T Consensus 404 ~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred cCChhHHHHHHHHHHHHC
Confidence 899999999999887653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.8e-15 Score=131.48 Aligned_cols=195 Identities=15% Similarity=0.054 Sum_probs=159.4
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHH
Q 043142 173 ELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLS 249 (512)
Q Consensus 173 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~ 249 (512)
+++...+..+...+.+.|++++|...|++..+. +...|..+...+.+.|++++|+..|++..+..+.+...+..+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 566778888899999999999999999987653 46788889999999999999999999999887777888889999
Q ss_pred HHhcC-----------CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHhHHHHHH
Q 043142 250 ACSRG-----------GLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGVWGALL 316 (512)
Q Consensus 250 a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 316 (512)
++... |++++|...|++.++. .| +...+..+...|...|++++|+..|++. ....+...|..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 99999 9999999999999854 66 6788899999999999999999999887 2226778999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
..+...|++++|...++++++.+|.++..+..+..++...|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-14 Score=132.03 Aligned_cols=238 Identities=11% Similarity=0.036 Sum_probs=136.5
Q ss_pred HHHHHhCCChHHHHHHHHhhhhCCCChh-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCC--chHHHHHHHHHHHhcCC
Q 043142 115 IDMYAKCSCVVNARQVFDKILERDPSEA-TLVTVISASADIAALPQGRELHGFSWRHRFEL--NVKVKTALVDMYAKCGL 191 (512)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~ 191 (512)
...+.+.|++++|+..|+++.+.+|+.. .+..+...+...|++++|...+..+++....+ ....+..+...|.+.|+
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 3344444444444444444444444322 34444444444444444444444444421111 12235556666666666
Q ss_pred HHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 192 VKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 192 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
+++|.+.|++..+ .+...|..+...|...|++++|+..|++..+..+.+...+..+...+...+++++|...|+.+.
T Consensus 90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 169 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665432 2345666666666667777777777766665544555555555523333347777777777776
Q ss_pred HhcCCCC-ChhHHHHHHHHHhccCC---hHHHHHHHHhC----CCCCC------HhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043142 269 RDYHIDP-SVQHYTCMVDLLGHSGR---LDEACDLIMQM----RVKPD------PGVWGALLNSCKLHGHVKLAELALEK 334 (512)
Q Consensus 269 ~~~~~~p-~~~~~~~li~~~~~~g~---~~~A~~~~~~m----~~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~ 334 (512)
+. .| +...+..+...+...|+ +++|...+++. ...|+ ..+|..+...+...|++++|...+++
T Consensus 170 ~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 170 EL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp HH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred Hh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 43 34 35566666666666666 66666666554 11233 24677788889999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHh
Q 043142 335 LIELEPHDAGNYVILSNIYAR 355 (512)
Q Consensus 335 ~~~~~p~~~~~~~~l~~~~~~ 355 (512)
+++.+|.++.++..+......
T Consensus 247 al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 247 ILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHCTTCHHHHHHHC-----
T ss_pred HHhcCccHHHHHHHhhhhhcc
Confidence 999999998777666554443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.3e-15 Score=133.75 Aligned_cols=228 Identities=9% Similarity=-0.042 Sum_probs=121.5
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhcc
Q 043142 75 TFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADI 154 (512)
Q Consensus 75 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~ 154 (512)
.+..+...+...|++++|.+.+..+++.. .+..++..+...|...|++++|.+.|++..+.+|+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------ 72 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR------------ 72 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc------------
Confidence 44555555666666666666666666555 4555666666666666666666666665544332110
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhH
Q 043142 155 AALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMK 234 (512)
Q Consensus 155 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 234 (512)
...+....++..+...|.+.|++++|...|++..+.+.. ...+...|++++|...++++.
T Consensus 73 ---------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~ 132 (258)
T 3uq3_A 73 ---------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEA 132 (258)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHH
Confidence 000000234444555555555555555555544321111 123444555566666666655
Q ss_pred HCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhH
Q 043142 235 DEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGV 311 (512)
Q Consensus 235 ~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~ 311 (512)
...+.+...+..+...+...|++++|...++.+.+. .| +...+..+...|.+.|++++|...+++. ...| +...
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 209 (258)
T 3uq3_A 133 YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 209 (258)
T ss_dssp HCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHH
Confidence 544444455555666666666666666666666533 22 4455555556666666666666665554 2223 2445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 043142 312 WGALLNSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 312 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
|..+...+...|++++|...++++++..
T Consensus 210 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 210 YIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 6666666666666666666666666655
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-13 Score=145.55 Aligned_cols=315 Identities=13% Similarity=0.103 Sum_probs=211.9
Q ss_pred HHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChH
Q 043142 11 TKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIE 90 (512)
Q Consensus 11 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 90 (512)
..+...+...|.+++|..+|++.. ......+.++. ..|++++|.++.++.. +..+|..+..++...|+++
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHH
Confidence 334555666777777777777764 22222233322 5566777777766441 3456777777777777777
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 043142 91 EGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRH 170 (512)
Q Consensus 91 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 170 (512)
+|.+.|.+. .|...|..++..+.+.|++++|.+.|....+..+++...+.++.+|++.+++++..... +
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 777777442 45666677777777777777777777776666555544445777777777766433332 1
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHH
Q 043142 171 RFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSA 250 (512)
Q Consensus 171 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a 250 (512)
.++...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|.+.+++. .+..+|..+..+
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFA 1259 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHH
Confidence 234455556777777788888888888775 47777888888888888888887766 356777777778
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH-hHHHHHHHHHHHc--CCHH
Q 043142 251 CSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDP-GVWGALLNSCKLH--GHVK 326 (512)
Q Consensus 251 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~--g~~~ 326 (512)
|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.. +..|.. ..|.-|...+.+. ++..
T Consensus 1260 cve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHH
Confidence 88888877777755432 334566778888999999999999999766 444433 3666666666553 4555
Q ss_pred HHHHHHHHHHhcCC-----CCCchHHHHHHHHHhccChhHHHH
Q 043142 327 LAELALEKLIELEP-----HDAGNYVILSNIYARAANWEGVAK 364 (512)
Q Consensus 327 ~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 364 (512)
++.+.|..-....| .+...|.-++..|.+.|+|+.|..
T Consensus 1334 Ehlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1334 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 66666665555444 466788889999999999998884
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.9e-14 Score=128.58 Aligned_cols=221 Identities=10% Similarity=-0.027 Sum_probs=150.3
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCC--CC----hhHH
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWE--TD----VFVG 111 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~----~~~~ 111 (512)
...|..+...+...|++++|+..|+++.+.. ++...+..+..++...|++++|.+.+..+++.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888888999999999999999998876 67788888889999999999999999988876411 12 5788
Q ss_pred HHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 043142 112 AALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGL 191 (512)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 191 (512)
..+...|.+.|++++|...|+++...+|+.. .+...|++++|...+..+.+.. +.+..++..+...|...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD-------ILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchhH-------HHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 8899999999999999999999988777632 2344455666666666665542 2234455555556666666
Q ss_pred HHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 192 VKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 192 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
+++|...|++..+ .+...|..+...|...|++++|+..|++..+..+.+..++..+..++...|++++|...++...
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666655432 2344555555555555566666665555555444445555555555555555555555555554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.63 E-value=9.2e-13 Score=140.31 Aligned_cols=316 Identities=13% Similarity=0.126 Sum_probs=248.4
Q ss_pred ccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHH
Q 043142 19 ACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHED 98 (512)
Q Consensus 19 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 98 (512)
..|++++|.++.++.. +..+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|++++|.+.+..
T Consensus 1088 ~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6677888888877664 4678999999999999999999999764 3667789999999999999999999998
Q ss_pred HHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHH
Q 043142 99 VIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKV 178 (512)
Q Consensus 99 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 178 (512)
..+.. +++.+.+.++.+|++.+++++..... .+|+...|..+...|...|++++|...|..+ ..
T Consensus 1160 Ark~~--~e~~Idt~LafaYAKl~rleele~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~n 1223 (1630)
T 1xi4_A 1160 ARKKA--RESYVETELIFALAKTNRLAELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 1223 (1630)
T ss_pred HHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hH
Confidence 87764 55555667999999999998644442 3467778888999999999999999999985 37
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHH
Q 043142 179 KTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFD 258 (512)
Q Consensus 179 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~ 258 (512)
|..+...|.+.|++++|.+.+++. .+..+|..+-.+|...|++..|......+. .+...+..++..|.+.|.++
T Consensus 1224 y~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~Ii----v~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1224 FGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh----cCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999987 567899999999999999999888765421 56667778999999999999
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhc--cCChHHHHHHHHhC-CCCC------CHhHHHHHHHHHHHcCCHHHH
Q 043142 259 EGRMFFESMVRDYHIDP-SVQHYTCMVDLLGH--SGRLDEACDLIMQM-RVKP------DPGVWGALLNSCKLHGHVKLA 328 (512)
Q Consensus 259 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~--~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~A 328 (512)
+|+.+++... ++.| ....|+-|..+|++ .+++.++.++|..- .+.| +...|.-+.-.|.+.|+++.|
T Consensus 1298 EAI~LlE~aL---~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1298 ELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred HHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 9999998876 5565 55566666666665 45666777766543 3322 455799999999999999999
Q ss_pred HHHHHHHHh------------cCCCCCchHHHHHHHHHhcc---------------ChhHHHHHHH
Q 043142 329 ELALEKLIE------------LEPHDAGNYVILSNIYARAA---------------NWEGVAKLRK 367 (512)
Q Consensus 329 ~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~ 367 (512)
....-+-.. ..+.++..|.-.+..|.... +.+.+.++|.
T Consensus 1375 ~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1375 IITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 833222211 13567777777777777666 6666666665
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=5.7e-14 Score=135.54 Aligned_cols=244 Identities=9% Similarity=0.014 Sum_probs=189.7
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 043142 108 VFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAA-LPQGRELHGFSWRHRFELNVKVKTALVDM 185 (512)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 185 (512)
..+|+.+...+.+.|++++|+..|+++.+.+|+. ..|..+..++...|+ +++|...++.+++.. +.+..+|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 3456667777777788888888888877777754 456677777777775 888888887777764 3467788888888
Q ss_pred HHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhc-CCCHHHH-
Q 043142 186 YAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSR-GGLFDEG- 260 (512)
Q Consensus 186 y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~-~g~~~~a- 260 (512)
|.+.|++++|...|+++.+ .+...|..+..++...|++++|+..|+++.+..+-+...|..+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 8888888888888888763 3567888888889999999999999999988877788888888888888 5665777
Q ss_pred ----HHHHHHHHHhcCCCC-ChhHHHHHHHHHhccC--ChHHHHHHHHhCCCCCC-HhHHHHHHHHHHHcC---------
Q 043142 261 ----RMFFESMVRDYHIDP-SVQHYTCMVDLLGHSG--RLDEACDLIMQMRVKPD-PGVWGALLNSCKLHG--------- 323 (512)
Q Consensus 261 ----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g--------- 323 (512)
+..|++.++. .| +...|..+..+|.+.| ++++|++.++++...|+ ...+..+...+...|
T Consensus 256 ~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 256 LEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 4778887743 66 6778888888888888 68899998888754554 457788888887764
Q ss_pred CHHHHHHHHHHH-HhcCCCCCchHHHHHHHHHh
Q 043142 324 HVKLAELALEKL-IELEPHDAGNYVILSNIYAR 355 (512)
Q Consensus 324 ~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 355 (512)
..++|+++++++ .+.+|.....|..+...+..
T Consensus 333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258999999999 89999888888877766643
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-14 Score=130.51 Aligned_cols=215 Identities=10% Similarity=-0.043 Sum_probs=136.9
Q ss_pred HccCChHHHHHHHccCCCC-------CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChH
Q 043142 18 SACDCLHNAHQLFDRIPQR-------NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIE 90 (512)
Q Consensus 18 ~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 90 (512)
...|++++|++.|+++.+. +..+|..+...+...|++++|+..|+++.... +.+..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3456777777777765431 35567777777777888888888888777643 124556777777777778888
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 043142 91 EGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRH 170 (512)
Q Consensus 91 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 170 (512)
+|.+.++.+++.. +.+..++..+...|.+.|++++|.+.|+++.+.+|+.......+..+...|++++|...+......
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888887777764 445677777777777788888888888777777776655555555555566777777777666554
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------chHHHHHHHHHHHcCChHHHHHHHHHhHHC
Q 043142 171 RFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR-------VVSWNAMITGYAMHGHSTKALDLFEKMKDE 236 (512)
Q Consensus 171 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 236 (512)
. +++...+. ++..+...++.++|...++...+.+ ...|..+...|...|++++|...|++....
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 3 22333332 5555556666666666666655432 234455555555555555555555555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-12 Score=129.80 Aligned_cols=303 Identities=13% Similarity=0.035 Sum_probs=219.7
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHC-----C--CCCC-cchHHHHHHHHhccCChHHHHHHHHHHHHhC-----
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEI-----G--LVPD-NFTFPFALKACSALSAIEEGRRIHEDVIRNK----- 103 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----- 103 (512)
.+..||.|...+...|++++|++.|++..+. + ..|+ ..+|..+..++...|++++|...++++++..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567999999999999999999999987542 1 1233 3578899999999999999999999877531
Q ss_pred -C-CCChhHHHHHHHHHHhC--CChHHHHHHHHhhhhCCCChhH-HHHHHHH---HhccCChHHHHHHHHHHHHcCCCCc
Q 043142 104 -W-ETDVFVGAALIDMYAKC--SCVVNARQVFDKILERDPSEAT-LVTVISA---SADIAALPQGRELHGFSWRHRFELN 175 (512)
Q Consensus 104 -~-~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~pd~~t-~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~~~~ 175 (512)
. .....+++.+..++.+. +++++|+..|++..+.+|+... +..+..+ +...++.++|.+.+...++.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 1 12345666666666554 5699999999999999987543 3333333 345678888999999888765 345
Q ss_pred hHHHHHHHHHHHh----cCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHH
Q 043142 176 VKVKTALVDMYAK----CGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVL 248 (512)
Q Consensus 176 ~~~~~~li~~y~~----~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll 248 (512)
..++..+...+.+ .|++++|.+.|++... .+...|..+...|...|++++|+..|++..+..+.+..++..+.
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 5566655555544 4678899999987653 34678899999999999999999999999887776677777666
Q ss_pred HHHhcC-------------------CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC
Q 043142 249 SACSRG-------------------GLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP 307 (512)
Q Consensus 249 ~a~~~~-------------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 307 (512)
.++... +..++|...++...+. .| +...+..+...|.+.|++++|++.|++. ...|
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA---NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH---CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc---CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 655322 2356777778777643 44 5667888889999999999999999876 3445
Q ss_pred CHhH----HHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 308 DPGV----WGALLN-SCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 308 ~~~~----~~~ll~-~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
+... +..+.. .....|+.++|+..+++++++.|.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 4432 222222 23467889999999999999988763
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-13 Score=123.33 Aligned_cols=192 Identities=13% Similarity=0.045 Sum_probs=91.3
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 043142 107 DVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDM 185 (512)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 185 (512)
+...+..+...+.+.|++++|...|++..+.+|+. ..+..+..++.+.|++++|...++.+++.. +.+...+..+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 33444444444444444444444444444444422 233334444444444444444444444432 2233444444445
Q ss_pred HHhc-----------CCHHHHHHHHHhcCC--C-CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHH
Q 043142 186 YAKC-----------GLVKVARNLFEQLRE--K-RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSAC 251 (512)
Q Consensus 186 y~~~-----------g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~ 251 (512)
|.+. |++++|...|++..+ | +...|..+...|...|++++|+..|++..+.. .+...+..+..++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~ 161 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHH
Confidence 5444 566666666655432 2 24455555566666666666666666665555 5555566666666
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 252 SRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
...|++++|...|+...+. .| +...+..+...+.+.|++++|...+++.
T Consensus 162 ~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666533 34 4455556666666666666666655543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=5e-13 Score=123.07 Aligned_cols=233 Identities=12% Similarity=0.029 Sum_probs=140.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC--hhHHHHHHHHH
Q 043142 41 WNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETD--VFVGAALIDMY 118 (512)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~ 118 (512)
+......+...|++++|+..|++..+... .+...+..+...+...|++++|.+.+..+++.+..++ ...|..+...|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 44455556666666666666666665421 1233555555666666666666666666665321111 12255566666
Q ss_pred HhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 043142 119 AKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNL 198 (512)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 198 (512)
.+.|++++|.+.|++..+.+| .+..++..+...|.+.|++++|...
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~----------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~ 130 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT----------------------------------TRLDMYGQIGSYFYNKGNFPLAIQY 130 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST----------------------------------TCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc----------------------------------ccHHHHHHHHHHHHHccCHHHHHHH
Confidence 666666666666666555443 2345666677777777777777777
Q ss_pred HHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhcC
Q 043142 199 FEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGL---FDEGRMFFESMVRDYH 272 (512)
Q Consensus 199 ~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~ 272 (512)
|++..+. +...|..+...+...+++++|+..|++..+..+.+...+..+..++...|+ +++|...++.+.+...
T Consensus 131 ~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 131 MEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp HGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred HHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 7776543 245565565233334577777777777776655556666666666666666 6667777777665432
Q ss_pred CCCCh------hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC
Q 043142 273 IDPSV------QHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD 308 (512)
Q Consensus 273 ~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 308 (512)
-.|+. ..|..+...|.+.|++++|.+.+++. ...|+
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 23432 46666777777778888887777766 33443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-13 Score=125.66 Aligned_cols=242 Identities=10% Similarity=-0.058 Sum_probs=160.8
Q ss_pred hccCChHHHHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHH
Q 043142 84 SALSAIEEGRRIHEDVIRNKW---ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQG 160 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a 160 (512)
...+++++|.+.++.+++... +.+..++..+...|...|++++|...|+++.+.+|+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-------------------- 75 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-------------------- 75 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------------------
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC--------------------
Confidence 345667777777777776531 123556666677777777777777777776665543
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCC
Q 043142 161 RELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEV 237 (512)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 237 (512)
+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|...|+++.+..
T Consensus 76 --------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 76 --------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp --------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 344555566666666666666666665542 245667777777777888888888888777654
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-----HhH
Q 043142 238 QPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-----PGV 311 (512)
Q Consensus 238 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~ 311 (512)
+.+. .....+..+...|++++|...++...... .++...+ .++..+...++.++|...+++. ...|+ ..+
T Consensus 142 ~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (275)
T 1xnf_A 142 PNDP-FRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSET 217 (275)
T ss_dssp TTCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred CCCh-HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHH
Confidence 4332 23333344456688888888887776542 2333333 4667777778888888888776 22232 468
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHH
Q 043142 312 WGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 312 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (512)
|..+...+...|++++|...++++++.+|.+...+ ..++...|++++|.+.+
T Consensus 218 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 218 NFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 88899999999999999999999999998775443 55677888888887765
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-13 Score=123.63 Aligned_cols=194 Identities=9% Similarity=-0.020 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcC
Q 043142 178 VKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRG 254 (512)
Q Consensus 178 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~ 254 (512)
.+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+..+.+...+..+...+...
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH
Confidence 344444455555555555555544331 22344555555555555555555555555554444445555555555555
Q ss_pred CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHH
Q 043142 255 GLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELA 331 (512)
Q Consensus 255 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~ 331 (512)
|++++|..+++.+.+ .+..| +...+..+...|.+.|++++|...+++. ...| +...|..+...+...|++++|...
T Consensus 119 g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp TCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 566666655555543 12233 3445555555555566666666555554 1122 344555556666666666666666
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 332 LEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 332 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
++++.+..|.++..+..+...|...|++++|.++++++.+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 198 YDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666666665555666666666666666666666665543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.9e-13 Score=119.73 Aligned_cols=198 Identities=14% Similarity=0.049 Sum_probs=152.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHH
Q 043142 175 NVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSAC 251 (512)
Q Consensus 175 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~ 251 (512)
+..++..+...|...|++++|.+.|+.+.+ .+...|..+...|...|++++|.+.|++.....+.+..++..+...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 455667777778888888888888877543 34567777888888888888888888888776666677788888888
Q ss_pred hcC-CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHH
Q 043142 252 SRG-GLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKL 327 (512)
Q Consensus 252 ~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 327 (512)
... |++++|..+++.+.+ .+..| +...+..+...+.+.|++++|+..++++ ...| +...|..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 888 888888888888865 22344 3567777888888888888888888776 2233 45678888888888888888
Q ss_pred HHHHHHHHHhcCC-CCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 328 AELALEKLIELEP-HDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 328 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
|...++++++..| .++..+..+...+...|+.++|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 8888888888888 777788888888888888888888888876543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-12 Score=118.76 Aligned_cols=202 Identities=14% Similarity=0.005 Sum_probs=134.6
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 043142 108 VFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYA 187 (512)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 187 (512)
...+..+...|...|++++|.+.|+++.+.+|+ +..++..+...|.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----------------------------------~~~~~~~la~~~~ 82 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS----------------------------------SADAHAALAVVFQ 82 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT----------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----------------------------------hHHHHHHHHHHHH
Confidence 455666666777777777777777776655442 3344455555555
Q ss_pred hcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCHHHHHHHHHHHhcCCCHHHHHH
Q 043142 188 KCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLFDEGRM 262 (512)
Q Consensus 188 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~~g~~~~a~~ 262 (512)
+.|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++...+. .+...+..+...+...|++++|..
T Consensus 83 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 83 TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555432 2345566666666667777777777776665222 345566667777777778888887
Q ss_pred HHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 043142 263 FFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 263 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
+++.+.+. .| +...+..+...|.+.|++++|..+++++ ...| +...+..+...+...|+.++|.+.++++.+..
T Consensus 163 ~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 163 YFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 77777644 34 4667777788888888888888888776 3333 45577778888888899999999999998888
Q ss_pred CCCCchH
Q 043142 340 PHDAGNY 346 (512)
Q Consensus 340 p~~~~~~ 346 (512)
|.++...
T Consensus 240 p~~~~~~ 246 (252)
T 2ho1_A 240 PGSLEYQ 246 (252)
T ss_dssp TTSHHHH
T ss_pred CCCHHHH
Confidence 8876543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-13 Score=123.72 Aligned_cols=171 Identities=13% Similarity=0.089 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcC
Q 043142 178 VKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRG 254 (512)
Q Consensus 178 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~ 254 (512)
++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+..+.+...+..+...+...
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 138 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL 138 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 344444444445555555554444321 23344555555556666666666666666555444555566666666666
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHH
Q 043142 255 GLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELAL 332 (512)
Q Consensus 255 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~ 332 (512)
|++++|..+++.+.+.. ..+...+..+...|.+.|++++|...++++ ...| +..+|..+...+...|++++|...+
T Consensus 139 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 139 EQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp SCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 66666666666665331 124555566666666666666666666555 1222 3446666666666666777777777
Q ss_pred HHHHhcCCCCCchHHHHH
Q 043142 333 EKLIELEPHDAGNYVILS 350 (512)
Q Consensus 333 ~~~~~~~p~~~~~~~~l~ 350 (512)
+++++..|.++..+..+.
T Consensus 217 ~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 217 DKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHCTTCHHHHHHHT
T ss_pred HHHHccCcchHHHHHHHH
Confidence 776666666655554443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-13 Score=134.45 Aligned_cols=268 Identities=13% Similarity=0.038 Sum_probs=153.7
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHH
Q 043142 74 FTFPFALKACSALSAIEEGRRIHEDVIRNKWETD----VFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVIS 149 (512)
Q Consensus 74 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~ 149 (512)
..+......+...|++++|...++.+++.. +.+ ..++..+...|...|++++|...|++.....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------- 77 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA----------- 77 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-----------
Confidence 344555566677777777777777777764 222 2456667777777777777777777654321
Q ss_pred HHhccCChHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHH
Q 043142 150 ASADIAALPQGRELHGFSWRHRF-ELNVKVKTALVDMYAKCGLVKVARNLFEQLRE-----KR----VVSWNAMITGYAM 219 (512)
Q Consensus 150 ~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~ 219 (512)
.+.+- +....++..+...|...|++++|...|++..+ .+ ..++..+...|..
T Consensus 78 ------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 78 ------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp ------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 00000 01122344444455555555555555444321 11 2245555555555
Q ss_pred cCC--------------------hHHHHHHHHHhHHC----CC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 043142 220 HGH--------------------STKALDLFEKMKDE----VQ--PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHI 273 (512)
Q Consensus 220 ~g~--------------------~~~A~~~~~~m~~~----~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 273 (512)
.|+ +++|+..+++.... +. ....++..+...+...|++++|...++...+...-
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 555 55565555554322 11 12234556666666677777777766666533111
Q ss_pred CCC----hhHHHHHHHHHhccCChHHHHHHHHhC----CCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 043142 274 DPS----VQHYTCMVDLLGHSGRLDEACDLIMQM----RVKPD----PGVWGALLNSCKLHGHVKLAELALEKLIELEPH 341 (512)
Q Consensus 274 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 341 (512)
.++ ...+..+...|...|++++|...+++. +..++ ..++..+...+...|++++|...++++++..+.
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 111 235666667777777777777776655 11111 336667777777788888888888777765422
Q ss_pred C------CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 342 D------AGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 342 ~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
. ..++..+...|...|++++|.+.+++..+
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 44666777788888888888888777654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-12 Score=116.18 Aligned_cols=205 Identities=13% Similarity=0.066 Sum_probs=128.3
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 043142 107 DVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMY 186 (512)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 186 (512)
+..++..+...|...|++++|.+.|+++.+.+|+ +..++..+...|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------------------------~~~~~~~l~~~~ 52 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK----------------------------------NELAWLVRAEIY 52 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------------------------CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc----------------------------------chHHHHHHHHHH
Confidence 4555666666777777777777777766655543 222334444444
Q ss_pred HhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHc-CChHHHHHHHHHhHHCCC-C-CHHHHHHHHHHHhcCCCHHHH
Q 043142 187 AKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMH-GHSTKALDLFEKMKDEVQ-P-DHITFVGVLSACSRGGLFDEG 260 (512)
Q Consensus 187 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~-p-~~~t~~~ll~a~~~~g~~~~a 260 (512)
...|++++|.+.|+++.+ .+...|..+...|... |++++|+..|+++..... | +...+..+..++...|++++|
T Consensus 53 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 53 QYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 444444444444444321 2334555555666666 666666666666665212 2 345566667777777777777
Q ss_pred HHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043142 261 RMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK--PDPGVWGALLNSCKLHGHVKLAELALEKLI 336 (512)
Q Consensus 261 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 336 (512)
...++.+.+. .| +...+..+...|.+.|++++|...++++ ... .+...+..+...+...|+.+.|..+++.+.
T Consensus 133 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 133 EAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 7777777643 34 4666777777777778888887777766 222 345566677777788888888888888888
Q ss_pred hcCCCCCchHHH
Q 043142 337 ELEPHDAGNYVI 348 (512)
Q Consensus 337 ~~~p~~~~~~~~ 348 (512)
+..|+++.....
T Consensus 210 ~~~p~~~~~~~~ 221 (225)
T 2vq2_A 210 ANFPYSEELQTV 221 (225)
T ss_dssp HHCTTCHHHHHH
T ss_pred HhCCCCHHHHHH
Confidence 888877655443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-12 Score=119.76 Aligned_cols=220 Identities=9% Similarity=-0.079 Sum_probs=117.4
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCChhHHHH
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSA----LSAIEEGRRIHEDVIRNKWETDVFVGAA 113 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 113 (512)
..++..+...|...|++++|++.|++..+.+ +..++..+...+.. .+++++|.+.+++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3444445555555555555555555554421 22344444444444 555555555555555443 3444555
Q ss_pred HHHHHHh----CCChHHHHHHHHhhhhCCCChhHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 043142 114 LIDMYAK----CSCVVNARQVFDKILERDPSEATLVTVISASAD----IAALPQGRELHGFSWRHRFELNVKVKTALVDM 185 (512)
Q Consensus 114 li~~~~~----~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 185 (512)
+...|.. .+++++|++.|++..+.+ +..++..+...+.. .+++++|...+....+.+ +...+..+...
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 5555555 555555555555555443 44445555555554 555555555555555544 34445555555
Q ss_pred HHh----cCCHHHHHHHHHhcCCC-CchHHHHHHHHHHH----cCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhc---
Q 043142 186 YAK----CGLVKVARNLFEQLREK-RVVSWNAMITGYAM----HGHSTKALDLFEKMKDEVQPDHITFVGVLSACSR--- 253 (512)
Q Consensus 186 y~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~--- 253 (512)
|.+ .+++++|...|++..+. +..++..+...|.. .+++++|+..|++..+.+. ...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCC
Confidence 555 56666666666654432 34455555666666 6666666666666655433 3344555555555
Q ss_pred -CCCHHHHHHHHHHHHH
Q 043142 254 -GGLFDEGRMFFESMVR 269 (512)
Q Consensus 254 -~g~~~~a~~~~~~~~~ 269 (512)
.+++++|...|+...+
T Consensus 234 ~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCK 250 (273)
T ss_dssp SSCCSTTHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHH
Confidence 6666666666666653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=135.93 Aligned_cols=257 Identities=11% Similarity=0.012 Sum_probs=158.4
Q ss_pred HHHHhCCChHHHHHHHHhhhhCCCCh-----hHHHHHHHHHhccCChHHHHHHHHHHHHc----C-CCCchHHHHHHHHH
Q 043142 116 DMYAKCSCVVNARQVFDKILERDPSE-----ATLVTVISASADIAALPQGRELHGFSWRH----R-FELNVKVKTALVDM 185 (512)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~~~pd~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~li~~ 185 (512)
..+...|++++|+..|+++.+.+|+. ..+..+...+...|++++|...+..+++. + .+....++..+...
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 33444444444444444444433332 12333444444444444444444443332 1 11223455566666
Q ss_pred HHhcCCHHHHHHHHHhcCCC---------CchHHHHHHHHHHHcCC-----------------hHHHHHHHHHhHHC---
Q 043142 186 YAKCGLVKVARNLFEQLREK---------RVVSWNAMITGYAMHGH-----------------STKALDLFEKMKDE--- 236 (512)
Q Consensus 186 y~~~g~~~~A~~~~~~m~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~--- 236 (512)
|...|++++|...|++..+. ...+|..+...|...|+ +++|+..+++....
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 66677777776666654321 12456666677777777 77777777665432
Q ss_pred -CC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC----CC
Q 043142 237 -VQ--PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS----VQHYTCMVDLLGHSGRLDEACDLIMQM----RV 305 (512)
Q Consensus 237 -~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~ 305 (512)
+. ....++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|...+++. +.
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 295 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE 295 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 11 22346667777788888888888888877643211111 236777888888888888888888766 11
Q ss_pred CCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 306 KPD----PGVWGALLNSCKLHGHVKLAELALEKLIELEPH------DAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 306 ~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
..+ ..++..+...+...|++++|...++++++..+. ...++..+..+|...|++++|.+.+++..+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 296 LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111 347778888888999999999999998876432 2347788899999999999999999887654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=9.3e-13 Score=127.07 Aligned_cols=212 Identities=9% Similarity=0.015 Sum_probs=137.2
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCChhHHHHHH
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD-NFTFPFALKACSALSA-IEEGRRIHEDVIRNKWETDVFVGAALI 115 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li 115 (512)
...|+.+...+.+.|++++|+..|++++.. .|+ ...|..+..++...|+ +++|...++++++.. +.+..+|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 456788888888888888999888888874 344 4567777788888886 888888888888876 45777888888
Q ss_pred HHHHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh-cCCHH
Q 043142 116 DMYAKCSCVVNARQVFDKILERDPS-EATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAK-CGLVK 193 (512)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~ 193 (512)
.+|.+.|++++|+..|+++.+.+|+ ...|..+..++...|++++|...++.+++.. +.+...|+.+..+|.+ .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 8888888888888888888887774 3456666666677777777777777776654 3355566666666666 44434
Q ss_pred HH-----HHHHHhcCC---CCchHHHHHHHHHHHcC--ChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcC
Q 043142 194 VA-----RNLFEQLRE---KRVVSWNAMITGYAMHG--HSTKALDLFEKMKDEVQPDHITFVGVLSACSRG 254 (512)
Q Consensus 194 ~A-----~~~~~~m~~---~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~ 254 (512)
+| ...|++..+ .+...|+.+...+...| +.++|++.+.++ +..+.+...+..+...+.+.
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 44 244443321 22344444444444444 344555555444 22223344444444444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-13 Score=122.96 Aligned_cols=199 Identities=13% Similarity=0.106 Sum_probs=158.5
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHH
Q 043142 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSA 250 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a 250 (512)
.....+..+...+.+.|++++|...|+++.+. +...|..+...|...|++++|+..|++..+..+.+...+..+...
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34567778888899999999999999987643 467888899999999999999999999998877788889999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHH
Q 043142 251 CSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLA 328 (512)
Q Consensus 251 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A 328 (512)
+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|...++++ ...| +...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999997642 336788999999999999999999999887 3333 567899999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 329 ELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 329 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
...++++.+..|.++.++..++.+|...|++++|.+.+++..+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 9999999999999999999999999999999999999999987543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-12 Score=130.48 Aligned_cols=344 Identities=9% Similarity=-0.056 Sum_probs=223.7
Q ss_pred HHHHHHHccCChHHHHHHHccCCC-CCchHHHHHHHHHHhcCCc---hHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC
Q 043142 12 KLVHLYSACDCLHNAHQLFDRIPQ-RNLFLWNVLIRAYAWNGPY---EVAIELYYRLLEIGLVPDNFTFPFALKACSALS 87 (512)
Q Consensus 12 ~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 87 (512)
.+...+.+.|++++|.++|++..+ .++.++..|...|...|++ ++|+..|++..+. +...+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 456677889999999999988654 3667777777788888888 8999999988754 4445666666444444
Q ss_pred -----ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHH---HHHHHHhhhhCCCChhHHHHHHHHHhccCChHH
Q 043142 88 -----AIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVN---ARQVFDKILERDPSEATLVTVISASADIAALPQ 159 (512)
Q Consensus 88 -----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~ 159 (512)
++++|.+.+++..+.|. ...+..|...|...+..+. +.+.+......+ +......+...+...+.++.
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g-~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG-YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT-CTTHHHHHHHHHHHHTCGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCccc
Confidence 78899999999998763 2367778888887766444 444444443332 34566667777777775655
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcC---CHHHHHHHHHhcCCCC---chHHHHHHHHHHHc----CChHHHHHH
Q 043142 160 GRELHGFSWRHRFELNVKVKTALVDMYAKCG---LVKVARNLFEQLREKR---VVSWNAMITGYAMH----GHSTKALDL 229 (512)
Q Consensus 160 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~----g~~~~A~~~ 229 (512)
+......+.+.-...++..+..|..+|.+.| +.++|.+.|+...+.+ ...+..+...|... +++++|+..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 5544443333323334447888888999999 8899999998876443 23346666667554 688999999
Q ss_pred HHHhHHCCCCCHHHHHHHHHH-H--hcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccC-----ChHHHHHHHH
Q 043142 230 FEKMKDEVQPDHITFVGVLSA-C--SRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSG-----RLDEACDLIM 301 (512)
Q Consensus 230 ~~~m~~~~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~ 301 (512)
|++.. .+ +...+..+... + ...+++++|...|++..+. | +...+..|..+|. .| ++++|..+|+
T Consensus 240 ~~~aa-~g--~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 240 LEKIA-PG--YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHG-GG--STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHc-CC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 99987 33 33344445444 3 4588999999999988643 3 5667777777777 45 8999999999
Q ss_pred hCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----ccChhHHHHHHHHHHhCC
Q 043142 302 QMRVKPDPGVWGALLNSCKL----HGHVKLAELALEKLIELEPHDAGNYVILSNIYAR----AANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 302 ~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 373 (512)
+.- .-+...+..|...|.. ..++++|...|+++.+.+ ++.....|..+|.. ..+.++|...++...+.|
T Consensus 312 ~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 312 KAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 887 5566677777766665 348999999999988755 45677788888875 358889999988888777
Q ss_pred C
Q 043142 374 I 374 (512)
Q Consensus 374 ~ 374 (512)
.
T Consensus 389 ~ 389 (452)
T 3e4b_A 389 T 389 (452)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.9e-13 Score=132.26 Aligned_cols=311 Identities=13% Similarity=0.054 Sum_probs=221.9
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 043142 44 LIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAI---EEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120 (512)
Q Consensus 44 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 120 (512)
+...+.+.|++++|+++|++..+.| +...+..+...+...|+. ++|.+.|++..+. ++..+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5667788999999999999998876 333444555556667777 8999999988854 55566777775655
Q ss_pred CC-----ChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCCh---HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC--
Q 043142 121 CS-----CVVNARQVFDKILERDPSEATLVTVISASADIAAL---PQGRELHGFSWRHRFELNVKVKTALVDMYAKCG-- 190 (512)
Q Consensus 121 ~g-----~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-- 190 (512)
.| ++++|.+.|++..+.++.. .+..+...+...+.. ..+.+.+......| +......|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~-A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGN-TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSS-CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 55 7889999999998876433 566666666555443 34555555555555 3456777888888877
Q ss_pred --CHHHHHHHHHhcCCCCchHHHHHHHHHHHcC---ChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcC----CCHHHHH
Q 043142 191 --LVKVARNLFEQLREKRVVSWNAMITGYAMHG---HSTKALDLFEKMKDEVQPDHITFVGVLSACSRG----GLFDEGR 261 (512)
Q Consensus 191 --~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~----g~~~~a~ 261 (512)
+.+.+..+++.....+..++..+...|...| +.++|+..|++..+.+.++...+..+...|... +++++|.
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 5566777788877778889999999999999 899999999999999988888777777777665 7999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHH-H--hccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcC-----CHHHHHHHHH
Q 043142 262 MFFESMVRDYHIDPSVQHYTCMVDL-L--GHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHG-----HVKLAELALE 333 (512)
Q Consensus 262 ~~~~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g-----~~~~A~~~~~ 333 (512)
..|+... .-+...+..|..+ | ...+++++|+++|++.-..-+...+..|...|. .| ++++|...|+
T Consensus 238 ~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 238 ALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 9999885 2256667777776 4 568999999999998732336677777877776 55 9999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHh----ccChhHHHHHHHHHHhCCC
Q 043142 334 KLIELEPHDAGNYVILSNIYAR----AANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 334 ~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 374 (512)
++. |.++..+..|..+|.. ..++++|...|++..+.|.
T Consensus 312 ~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 312 KAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp TTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 998 7788899999999987 3499999999999988775
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-13 Score=131.49 Aligned_cols=295 Identities=11% Similarity=0.037 Sum_probs=201.8
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-----chHHHHHHHHhccCChHHHHHHHHHHHHh----CCC-
Q 043142 36 RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN-----FTFPFALKACSALSAIEEGRRIHEDVIRN----KWE- 105 (512)
Q Consensus 36 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~- 105 (512)
.....+......+...|++++|+..|+++...+ |+. ..+..+...+...|++++|...+.+.++. +..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 355667778889999999999999999998863 443 46777888899999999999999987654 211
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 043142 106 TDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDM 185 (512)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 185 (512)
....++..+...|...|++++|...|++..+..|... +. .....++..+...
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~---------------~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-------------DK---------------VGEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-------------CH---------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-------------cc---------------cchHHHHHHHHHH
Confidence 2255778888899999999999999988765432100 00 0012233444444
Q ss_pred HHhcCC--------------------HHHHHHHHHhcCC-----CC----chHHHHHHHHHHHcCChHHHHHHHHHhHHC
Q 043142 186 YAKCGL--------------------VKVARNLFEQLRE-----KR----VVSWNAMITGYAMHGHSTKALDLFEKMKDE 236 (512)
Q Consensus 186 y~~~g~--------------------~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 236 (512)
|...|+ +++|...|++..+ .+ ..+|..+...|...|++++|+..+++....
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445555 5555554444321 11 245666777777778888888777776543
Q ss_pred CC--CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC---
Q 043142 237 VQ--PD----HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS----VQHYTCMVDLLGHSGRLDEACDLIMQM--- 303 (512)
Q Consensus 237 ~~--p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m--- 303 (512)
.. ++ ..++..+...+...|++++|...++...+...-.++ ..++..+...|.+.|++++|...+++.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 22 22 236777777888888888888888877543211111 457778888888889999988888776
Q ss_pred -CCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCCchHHHHHHHHHhccChh
Q 043142 304 -RVKPD----PGVWGALLNSCKLHGHVKLAELALEKLIELEP------HDAGNYVILSNIYARAANWE 360 (512)
Q Consensus 304 -~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 360 (512)
+..++ ..++..+...+...|++++|...++++++..+ ....++..+...|...|+..
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11122 44778888899999999999999999987632 23456677788887777664
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-13 Score=129.72 Aligned_cols=266 Identities=13% Similarity=0.033 Sum_probs=168.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHh
Q 043142 77 PFALKACSALSAIEEGRRIHEDVIRNKWETD----VFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASA 152 (512)
Q Consensus 77 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~ 152 (512)
......+...|++++|...++++++.. +.+ ..++..+...|...|++++|.+.|++..+..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 73 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-------------- 73 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--------------
Confidence 334455666677777777777776664 222 2456666667777777777777766654321
Q ss_pred ccCChHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHHcCC
Q 043142 153 DIAALPQGRELHGFSWRHRF-ELNVKVKTALVDMYAKCGLVKVARNLFEQLRE-----KR----VVSWNAMITGYAMHGH 222 (512)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~ 222 (512)
.+.+. +....++..+...|...|++++|...|++..+ .+ ..++..+...|...|+
T Consensus 74 ---------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 74 ---------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp ---------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 00010 11133445555666666666666666655431 11 2355666666666666
Q ss_pred --------------------hHHHHHHHHHhHHC----CC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 043142 223 --------------------STKALDLFEKMKDE----VQ--PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS 276 (512)
Q Consensus 223 --------------------~~~A~~~~~~m~~~----~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 276 (512)
+++|...+++.... +. ....++..+...+...|++++|...++...+...-.++
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 66776666665432 11 22345666777777888888888888776543211111
Q ss_pred ----hhHHHHHHHHHhccCChHHHHHHHHhC----CCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 043142 277 ----VQHYTCMVDLLGHSGRLDEACDLIMQM----RVKPD----PGVWGALLNSCKLHGHVKLAELALEKLIELEPHD-- 342 (512)
Q Consensus 277 ----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-- 342 (512)
...+..+...|...|++++|...+++. +..++ ..++..+...+...|++++|...++++++..|..
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 336777788888888888888888765 11112 3467778888889999999999999988764322
Q ss_pred ----CchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 343 ----AGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 343 ----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
..++..+...|.+.|++++|.+.+++..+.
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 347778899999999999999999888764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.9e-12 Score=115.70 Aligned_cols=229 Identities=14% Similarity=0.001 Sum_probs=123.4
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCchHHHHHH
Q 043142 107 DVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASAD----IAALPQGRELHGFSWRHRFELNVKVKTAL 182 (512)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 182 (512)
+..++..+...|.+.|++++|.+.|++..+.+ +..++..+...+.. .+++++|...+....+.+ +...+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 45566666677777777777777777666532 23344444444444 555555555555555443 34444444
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhc----CCCHH
Q 043142 183 VDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSR----GGLFD 258 (512)
Q Consensus 183 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~----~g~~~ 258 (512)
..+|... ....+++++|+..|++..+.+ +...+..+...+.. .++++
T Consensus 81 g~~~~~g---------------------------~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 81 GNLYYSG---------------------------QGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp HHHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred HHHHhCC---------------------------CCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHH
Confidence 4444440 000444445555554444432 33444444444544 55555
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHH----cCCHHHHHH
Q 043142 259 EGRMFFESMVRDYHIDPSVQHYTCMVDLLGH----SGRLDEACDLIMQMRVKPDPGVWGALLNSCKL----HGHVKLAEL 330 (512)
Q Consensus 259 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~ 330 (512)
+|...|++..+. + +...+..+...|.. .+++++|+..+++.-...+...+..+...+.. .+++++|..
T Consensus 132 ~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~ 207 (273)
T 1ouv_A 132 KAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALA 207 (273)
T ss_dssp HHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHH
T ss_pred HHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 555555555432 1 33444445555554 55666666655554111234455556666666 666666666
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHh----ccChhHHHHHHHHHHhCCC
Q 043142 331 ALEKLIELEPHDAGNYVILSNIYAR----AANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 331 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 374 (512)
.++++.+.+| +..+..+..+|.. .+++++|.+.+++..+.|.
T Consensus 208 ~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 208 RYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 6666666654 3456666666666 6667777777766665553
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-12 Score=128.58 Aligned_cols=270 Identities=10% Similarity=0.015 Sum_probs=172.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-----chHHHHHHHHhccCChHHHHHHHHHHHHhC-----CCCChh
Q 043142 40 LWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN-----FTFPFALKACSALSAIEEGRRIHEDVIRNK-----WETDVF 109 (512)
Q Consensus 40 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~ 109 (512)
.+..+...+...|++++|+..|+++.+. .|+. ..+..+...+...|++++|.+.+++.++.. .+....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3444555666677777777777776664 2332 245555566666677777776666655431 012334
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHh
Q 043142 110 VGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHR-FELNVKVKTALVDMYAK 188 (512)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~ 188 (512)
++..+...|...|++++|...|++..+..+ +.+ .+....++..+...|..
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----------------------------~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLAR-----------------------------QLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------------------HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----------------------------HhhchHHHHHHHHHHHHHHHH
Confidence 555566666666666666666665543210 000 01123355566666666
Q ss_pred cCC-----------------HHHHHHHHHhcCC-----C----CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CC
Q 043142 189 CGL-----------------VKVARNLFEQLRE-----K----RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PD 240 (512)
Q Consensus 189 ~g~-----------------~~~A~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~ 240 (512)
.|+ +++|...|++..+ . ....|..+...|...|++++|+..|++...... ++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 666 6666666655432 1 124677777888888888888888888765432 22
Q ss_pred ----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHhccCChHHHHHHHHhC-CC---CCC
Q 043142 241 ----HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP----SVQHYTCMVDLLGHSGRLDEACDLIMQM-RV---KPD 308 (512)
Q Consensus 241 ----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~ 308 (512)
..++..+...+...|++++|...++...+...-.. ....+..+...|.+.|++++|...+++. .. .++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 23677788888899999999998887764321111 2467788888899999999999988876 11 111
Q ss_pred ----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 043142 309 ----PGVWGALLNSCKLHGHVKLAELALEKLIELEP 340 (512)
Q Consensus 309 ----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 340 (512)
..++..+...+...|++++|...+++++++.+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 33778888899999999999999999988764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-11 Score=115.80 Aligned_cols=217 Identities=9% Similarity=0.031 Sum_probs=150.6
Q ss_pred HHHHHHHHhhhhCCCCh-hHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 043142 125 VNARQVFDKILERDPSE-ATLVTVISASA-------DIAAL-------PQGRELHGFSWRHRFELNVKVKTALVDMYAKC 189 (512)
Q Consensus 125 ~~A~~~~~~m~~~~pd~-~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 189 (512)
++|..+|++....+|+. ..|..++..+. ..|++ ++|..++++.++.-.+.+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 45556666665555533 34444444433 23554 66666666666632234556777777777888
Q ss_pred CCHHHHHHHHHhcCCC---Cch-HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHH-hcCCCHHHHHHHH
Q 043142 190 GLVKVARNLFEQLREK---RVV-SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSAC-SRGGLFDEGRMFF 264 (512)
Q Consensus 190 g~~~~A~~~~~~m~~~---~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~-~~~g~~~~a~~~~ 264 (512)
|++++|.++|++..+. +.. .|..++..+.+.|++++|..+|++..+..+++...|....... ...|++++|..+|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888776542 233 7888888888888888888888888876665555554443332 2368899999999
Q ss_pred HHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-C---CCC--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 043142 265 ESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-R---VKP--DPGVWGALLNSCKLHGHVKLAELALEKLIE 337 (512)
Q Consensus 265 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 337 (512)
+..++. .| +...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..+++++.+
T Consensus 193 ~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 193 ELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888754 34 6778888888888889999999888877 2 244 345888888888888999999999999998
Q ss_pred cCCCCCc
Q 043142 338 LEPHDAG 344 (512)
Q Consensus 338 ~~p~~~~ 344 (512)
..|+++.
T Consensus 270 ~~p~~~~ 276 (308)
T 2ond_A 270 AFREEYE 276 (308)
T ss_dssp HTTTTTS
T ss_pred Hcccccc
Confidence 8887543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.2e-12 Score=108.90 Aligned_cols=164 Identities=15% Similarity=0.081 Sum_probs=124.1
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHH
Q 043142 207 VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVD 285 (512)
Q Consensus 207 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 285 (512)
...|..+...|.+.|++++|++.|++..+..+-+..++..+..++.+.|++++|...+...... .| +...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHHHHH
Confidence 4556777777777777777777777777766666677777777777788888888777777643 33 4566666777
Q ss_pred HHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHH
Q 043142 286 LLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVA 363 (512)
Q Consensus 286 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 363 (512)
.+...++++.|...+++. ...| +...|..+...+...|++++|++.|+++++.+|.++.+|..++.+|.+.|++++|.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 777778888887777766 2333 45577788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCC
Q 043142 364 KLRKLMIDRG 373 (512)
Q Consensus 364 ~~~~~m~~~g 373 (512)
+.|++..+..
T Consensus 162 ~~~~~al~~~ 171 (184)
T 3vtx_A 162 KYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhCC
Confidence 8888877653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-12 Score=121.68 Aligned_cols=272 Identities=11% Similarity=0.048 Sum_probs=177.4
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-----chHHHHHHHHhccCChHHHHHHHHHHHHh----CCC-CCh
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN-----FTFPFALKACSALSAIEEGRRIHEDVIRN----KWE-TDV 108 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~ 108 (512)
..+......+...|++++|+..|+++.+.. |+. ..+..+...+...|++++|.+.+...++. +.. ...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 345566778899999999999999998853 443 46777888899999999999999987654 211 235
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhhhhCC---CC----hhHHHHHHHHHhccCC-------------hHHHHHHHHHHH
Q 043142 109 FVGAALIDMYAKCSCVVNARQVFDKILERD---PS----EATLVTVISASADIAA-------------LPQGRELHGFSW 168 (512)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---pd----~~t~~~ll~~~~~~~~-------------~~~a~~~~~~~~ 168 (512)
.++..+...|...|++++|...|++..+.. ++ ..++..+...+...|+ .+.+...
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----- 158 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA----- 158 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-----
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-----
Confidence 677888889999999999999998875532 11 1133334444444444 0000000
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-
Q 043142 169 RHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE-----KR----VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ- 238 (512)
Q Consensus 169 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~- 238 (512)
+++|...+++..+ .+ ...+..+...|...|++++|...+++......
T Consensus 159 -----------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 159 -----------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 4444444443221 01 23556666667777777777777776654321
Q ss_pred -CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC----CC
Q 043142 239 -PD----HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS----VQHYTCMVDLLGHSGRLDEACDLIMQM----RV 305 (512)
Q Consensus 239 -p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~ 305 (512)
++ ..++..+...+...|++++|..+++...+...-.++ ..++..+...|...|++++|...+++. +.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 22 235666777777778888888777776543111111 456677778888888888888887765 10
Q ss_pred CCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 043142 306 KPD----PGVWGALLNSCKLHGHVKLAELALEKLIELEP 340 (512)
Q Consensus 306 ~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 340 (512)
.++ ..++..+...+...|++++|...++++++..+
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 111 33677788888999999999999999888764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-11 Score=116.20 Aligned_cols=211 Identities=9% Similarity=0.032 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHH-------hCCCh-------HHHHHHHHhhhh-CCCChh-HHHHHHHHHhcc
Q 043142 91 EGRRIHEDVIRNKWETDVFVGAALIDMYA-------KCSCV-------VNARQVFDKILE-RDPSEA-TLVTVISASADI 154 (512)
Q Consensus 91 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~-~~pd~~-t~~~ll~~~~~~ 154 (512)
+|..+|++.++.. +.++.+|..++..+. +.|++ ++|..+|++..+ .+|+.. .|..++..+...
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4444555554432 334445554444443 23553 555555555555 355332 455555555555
Q ss_pred CChHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHH-HHcCChHHHHHH
Q 043142 155 AALPQGRELHGFSWRHRFELNVK-VKTALVDMYAKCGLVKVARNLFEQLREKR---VVSWNAMITGY-AMHGHSTKALDL 229 (512)
Q Consensus 155 ~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~-~~~g~~~~A~~~ 229 (512)
|++++|..+|+.+++.. +.+.. +|..++..+.+.|++++|.++|++..+.+ ...|....... ...|+.++|..+
T Consensus 113 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55666666665555532 11222 56666666666677777777776655422 23333222221 125777777777
Q ss_pred HHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 230 FEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP--SVQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 230 ~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
|++..+..+.+...+..++..+.+.|++++|..+|++.++...+.| ....|..++..+.+.|+.++|..+++++
T Consensus 192 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777665555666677777777777888888888887765322344 3556777777777778888887777766
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.9e-12 Score=120.81 Aligned_cols=225 Identities=7% Similarity=-0.012 Sum_probs=129.3
Q ss_pred HHHHHHhCCChHHHHHHHHhhhhC---CCC----hhHHHHHHHHHhccCChHHHHHHHHHHHHcC--C----CCchHHHH
Q 043142 114 LIDMYAKCSCVVNARQVFDKILER---DPS----EATLVTVISASADIAALPQGRELHGFSWRHR--F----ELNVKVKT 180 (512)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~---~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~----~~~~~~~~ 180 (512)
....+...|++++|...|++..+. .++ ..++..+...+...|+++.|...+....+.- . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667778888888888777654 122 2345566666666777777776666665421 1 11134566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHHcCChHHHHHHHHHhHH-----CC-CCCHHHHH
Q 043142 181 ALVDMYAKCGLVKVARNLFEQLRE-----KR----VVSWNAMITGYAMHGHSTKALDLFEKMKD-----EV-QPDHITFV 245 (512)
Q Consensus 181 ~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~p~~~t~~ 245 (512)
.+...|...|++++|...|++..+ .+ ..+|..+...|...|++++|+..|++... .. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 666777777777777777665432 11 13566666677777777777777766655 23 22344566
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCC--CC-ChhHHHHHHHHHhccCC---hHHHHHHHHhCCCCCCHh-HHHHHHHH
Q 043142 246 GVLSACSRGGLFDEGRMFFESMVRDYHI--DP-SVQHYTCMVDLLGHSGR---LDEACDLIMQMRVKPDPG-VWGALLNS 318 (512)
Q Consensus 246 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~~-~~~~ll~~ 318 (512)
.+...+...|++++|...+++..+...- .| ....+..+...|...|+ +++|+.++++.+..|+.. .+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 6666667777777777766665432110 11 12224455556666666 666666666654333322 44455555
Q ss_pred HHHcCCHHHHHHHHHHHHhc
Q 043142 319 CKLHGHVKLAELALEKLIEL 338 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~ 338 (512)
|...|++++|...++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 55666666666666555543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-12 Score=128.78 Aligned_cols=206 Identities=10% Similarity=-0.011 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhH
Q 043142 159 QGRELHGFSWRHRFELNVKVKTALVDMYAKCGLV-KVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMK 234 (512)
Q Consensus 159 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 234 (512)
.+.+.+....+. .+.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++..
T Consensus 86 ~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 86 KTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444433332 234566777777777788888 888888877643 235678888888888888889998888887
Q ss_pred HCCCCCHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhcc--------CChHHH
Q 043142 235 DEVQPDHITFVGVLSACSRG---------GLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHS--------GRLDEA 296 (512)
Q Consensus 235 ~~~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--------g~~~~A 296 (512)
+.. |+...+..+..++... |++++|...|++.++. .| +...|..+..+|... |++++|
T Consensus 165 ~~~-p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 165 THC-KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp TTC-CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hhC-CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 654 5668888888888888 9999999999998754 55 678888889999888 899999
Q ss_pred HHHHHhC-CCCC----CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 043142 297 CDLIMQM-RVKP----DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLM 369 (512)
Q Consensus 297 ~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 369 (512)
++.|++. ...| +...|..+...+...|++++|.+.|+++++.+|.++.++..+..++...|++++|.+.+.++
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999887 3455 66799999999999999999999999999999999999999999999999999999765543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.3e-12 Score=108.38 Aligned_cols=166 Identities=13% Similarity=0.041 Sum_probs=143.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHH
Q 043142 175 NVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSAC 251 (512)
Q Consensus 175 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~ 251 (512)
+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+.....+.+...+..+...+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 567888899999999999999999998753 34678888999999999999999999999887777777888888889
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHH
Q 043142 252 SRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLA 328 (512)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A 328 (512)
...++++.+...+....+. .| +...+..+...|.+.|++++|++.|++. ...| +..+|..+...+...|++++|
T Consensus 84 ~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999999999998754 45 6778889999999999999999999887 3445 456899999999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 043142 329 ELALEKLIELEPHDA 343 (512)
Q Consensus 329 ~~~~~~~~~~~p~~~ 343 (512)
++.|+++++.+|.++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999998653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-11 Score=120.00 Aligned_cols=224 Identities=10% Similarity=0.028 Sum_probs=173.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHHc----CCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----chHHH
Q 043142 147 VISASADIAALPQGRELHGFSWRH----RFEL-NVKVKTALVDMYAKCGLVKVARNLFEQLRE-----KR-----VVSWN 211 (512)
Q Consensus 147 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~-----~~~~~ 211 (512)
....+...|++++|...+..+.+. +-++ ...++..+...|...|++++|...+++..+ .+ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 555678899999999999999874 1111 346788999999999999999999887642 11 35788
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHHCCC--CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCC-ChhHHH
Q 043142 212 AMITGYAMHGHSTKALDLFEKMKDEVQ--PD----HITFVGVLSACSRGGLFDEGRMFFESMVRDY---HIDP-SVQHYT 281 (512)
Q Consensus 212 ~li~~~~~~g~~~~A~~~~~~m~~~~~--p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~ 281 (512)
.+...|...|++++|+..|++..+... ++ ..++..+...+...|++++|...+++..+.. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999999865422 22 2478889999999999999999999887521 2213 466788
Q ss_pred HHHHHHhccCChHHHHHHHHhC-C---C--CCCH-hHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCchHHHHHH
Q 043142 282 CMVDLLGHSGRLDEACDLIMQM-R---V--KPDP-GVWGALLNSCKLHGH---VKLAELALEKLIELEPHDAGNYVILSN 351 (512)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m-~---~--~p~~-~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~ 351 (512)
.+...|.+.|++++|...+++. . . .|.. ..+..+...+...|+ +++|...+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999999999876 1 1 1222 245667777888888 77777777766 222444567889999
Q ss_pred HHHhccChhHHHHHHHHHHh
Q 043142 352 IYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 352 ~~~~~g~~~~a~~~~~~m~~ 371 (512)
.|...|++++|...+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998865
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.5e-12 Score=124.36 Aligned_cols=210 Identities=11% Similarity=0.019 Sum_probs=150.8
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh-HHHHHHHHhhhhCCCC-hhHHHHHHHHHhccCChHHHHHHHHH
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCV-VNARQVFDKILERDPS-EATLVTVISASADIAALPQGRELHGF 166 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~ 166 (512)
++.+.+.+....+.. +.+...+..+...|...|++ ++|++.|++..+.+|+ ...|..+...+...|++++|.+.++.
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555555444332 33555666666666666666 6666666666666654 34566666666666666666666666
Q ss_pred HHHcCCCCchHHHHHHHHHHHhc---------CCHHHHHHHHHhcCC---CCchHHHHHHHHHHHc--------CChHHH
Q 043142 167 SWRHRFELNVKVKTALVDMYAKC---------GLVKVARNLFEQLRE---KRVVSWNAMITGYAMH--------GHSTKA 226 (512)
Q Consensus 167 ~~~~g~~~~~~~~~~li~~y~~~---------g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~--------g~~~~A 226 (512)
+++.. |+...+..+...|... |++++|...|++..+ .+...|..+..+|... |++++|
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 66543 4456666677777777 777777777777542 3456777788888777 889999
Q ss_pred HHHHHHhHHCCC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHh
Q 043142 227 LDLFEKMKDEVQ---PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQ 302 (512)
Q Consensus 227 ~~~~~~m~~~~~---p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (512)
+..|++..+..+ .+...+..+..++...|++++|...|++..+. .| +...+..+..++...|++++|++.+.+
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999887666 68888999999999999999999999998754 56 566788889999999999999988877
Q ss_pred CC
Q 043142 303 MR 304 (512)
Q Consensus 303 m~ 304 (512)
+.
T Consensus 318 ~~ 319 (474)
T 4abn_A 318 TK 319 (474)
T ss_dssp CC
T ss_pred cc
Confidence 74
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.38 E-value=5.9e-10 Score=114.76 Aligned_cols=369 Identities=10% Similarity=0.013 Sum_probs=220.4
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCC---chHHHHHHHHHHHCC-CCCCcchH
Q 043142 4 GFHPVLATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGP---YEVAIELYYRLLEIG-LVPDNFTF 76 (512)
Q Consensus 4 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~~t~ 76 (512)
+.|...|..++..+.+.+.++.|+.+|+++.. .....|..-+..-.+.|. ++.+.++|++.+... ..|+...|
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 45778999999999999999999999998753 366788888888888888 999999999998753 13677677
Q ss_pred HHHHHHHhccCCh--------HHHHHHHHHHHHh-CC-CC-ChhHHHHHHHHHHh---------CCChHHHHHHHHhhhh
Q 043142 77 PFALKACSALSAI--------EEGRRIHEDVIRN-KW-ET-DVFVGAALIDMYAK---------CSCVVNARQVFDKILE 136 (512)
Q Consensus 77 ~~ll~~~~~~~~~--------~~a~~~~~~~~~~-g~-~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 136 (512)
..-+.-..+.++. +...++|+..+.. |. .+ +..+|...+..... .++++.+.++|+++..
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7766655444433 3455788776653 55 44 35688888876543 3456788899988876
Q ss_pred CCCCh--hHH---HHHHHHHhc----------cCChHHH-----------------------------------------
Q 043142 137 RDPSE--ATL---VTVISASAD----------IAALPQG----------------------------------------- 160 (512)
Q Consensus 137 ~~pd~--~t~---~~ll~~~~~----------~~~~~~a----------------------------------------- 160 (512)
..... .+| ..+...... ...++.|
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 42111 111 111111000 0011111
Q ss_pred --------------------------HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHH-HHHHhcCC---CCchHH
Q 043142 161 --------------------------RELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVAR-NLFEQLRE---KRVVSW 210 (512)
Q Consensus 161 --------------------------~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~m~~---~~~~~~ 210 (512)
..+|++++.. .+.+..+|-..+..+.+.|+.++|. ++|++... .+...|
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw 381 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence 2223333322 1223444444455555566666665 77666542 234456
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhHHCC----------CCC------------HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 211 NAMITGYAMHGHSTKALDLFEKMKDEV----------QPD------------HITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 211 ~~li~~~~~~g~~~~A~~~~~~m~~~~----------~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
-..+...-+.|++++|.++|+++.+.. .|+ ...|...+....+.|.++.|..+|....
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666667777777777777766431 131 2245555666666677777777777775
Q ss_pred HhcCCCCChhHHHHHHHHHhccC-ChHHHHHHHHhC--CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---C
Q 043142 269 RDYHIDPSVQHYTCMVDLLGHSG-RLDEACDLIMQM--RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPH---D 342 (512)
Q Consensus 269 ~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~---~ 342 (512)
+..+ .+....|...+.+-.+.+ +.+.|.++|+.. ....+...|...+.-....|+.+.|..+|+++++..|+ .
T Consensus 462 ~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 462 RLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp HTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred HhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 4300 112233333333333333 467777777665 12224445666666666677777777777777776652 3
Q ss_pred CchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 343 AGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
...|...+..-.+.|+.+.+.++.+++.+.-.
T Consensus 541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34566666666777777777777777766543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-11 Score=128.37 Aligned_cols=162 Identities=17% Similarity=0.235 Sum_probs=121.9
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHH
Q 043142 207 VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVD 285 (512)
Q Consensus 207 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 285 (512)
..+|+.+...|.+.|++++|++.|++..+..+-+..++..+..++.+.|++++|+..|++.++. .| +...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 3456667777777777777777777777665556677777777777777777777777777643 55 4667777777
Q ss_pred HHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHH
Q 043142 286 LLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVA 363 (512)
Q Consensus 286 ~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 363 (512)
+|.+.|++++|++.|++. .+.|+ ...|..+...+...|++++|++.|+++++++|+++.++..|+.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 777777777777777766 34454 4478888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHh
Q 043142 364 KLRKLMID 371 (512)
Q Consensus 364 ~~~~~m~~ 371 (512)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.36 E-value=5.1e-11 Score=102.22 Aligned_cols=160 Identities=18% Similarity=0.115 Sum_probs=100.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 043142 210 WNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLG 288 (512)
Q Consensus 210 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 288 (512)
|..+...+...|++++|+..|+++....+.+...+..+...+...|++++|..+++.+.+. .| +...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence 4444455555555555555555554444444555555555566666666666666665433 22 4455556666666
Q ss_pred ccCChHHHHHHHHhC-CC-CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHH
Q 043142 289 HSGRLDEACDLIMQM-RV-KPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 289 ~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (512)
..|++++|.+.++++ .. ..+...|..+...+...|++++|...++++.+..|.++..+..++..|...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666555 11 2344566677777777777777777777777777777777777777777778888887777
Q ss_pred HHHHhC
Q 043142 367 KLMIDR 372 (512)
Q Consensus 367 ~~m~~~ 372 (512)
++..+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 776654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-12 Score=120.65 Aligned_cols=166 Identities=19% Similarity=0.139 Sum_probs=102.8
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHC-------CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh------C
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEI-------GLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRN------K 103 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g 103 (512)
+..+|..+...+...|++++|+.+|+++.+. .......++..+...+...|++++|.+.+...++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456778888888888888888888887652 11122345666777777888888888888777664 2
Q ss_pred C-CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC--------C-ChhHHHHHHHHHhccCChHHHHHHHHHHHHc---
Q 043142 104 W-ETDVFVGAALIDMYAKCSCVVNARQVFDKILERD--------P-SEATLVTVISASADIAALPQGRELHGFSWRH--- 170 (512)
Q Consensus 104 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 170 (512)
- +....++..+...|...|++++|...|+++.+.. | ....+..+...+...|++++|...+..+.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 2235567777788888888888888887765431 1 1123445555555556666666655555443
Q ss_pred ---C-CCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 043142 171 ---R-FELNVKVKTALVDMYAKCGLVKVARNLFEQL 202 (512)
Q Consensus 171 ---g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 202 (512)
+ .+....++..+...|.+.|++++|...|+++
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 1112334455555555555555555555544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-11 Score=114.72 Aligned_cols=230 Identities=14% Similarity=0.127 Sum_probs=165.5
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHHHHc-------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C--
Q 043142 142 ATLVTVISASADIAALPQGRELHGFSWRH-------RFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE-------K-- 205 (512)
Q Consensus 142 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~-- 205 (512)
.++..+...+...|++++|..++..+.+. ..+....++..+...|...|++++|...|++..+ +
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 56778888889999999999999988874 3344567788899999999999999999987652 1
Q ss_pred --CchHHHHHHHHHHHcCChHHHHHHHHHhHHC------CC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----
Q 043142 206 --RVVSWNAMITGYAMHGHSTKALDLFEKMKDE------VQ--PDHITFVGVLSACSRGGLFDEGRMFFESMVRDY---- 271 (512)
Q Consensus 206 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---- 271 (512)
...+|..+...|...|++++|+..|++..+. +. .....+..+...+...|++++|..+++.+.+..
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 1467888889999999999999999998764 22 345667888889999999999999999886531
Q ss_pred -CCCC-ChhHHHHHHHHHhccCChHHHHHHHHhCC----------CCCCHh-H------HHHHHHHHHHcCCHHHHHHHH
Q 043142 272 -HIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQMR----------VKPDPG-V------WGALLNSCKLHGHVKLAELAL 332 (512)
Q Consensus 272 -~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~p~~~-~------~~~ll~~~~~~g~~~~A~~~~ 332 (512)
+-.| ....+..+...|.+.|++++|.+.++++- ..+... . +..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1133 45678888999999999999999987761 112111 2 222223334455666667777
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 333 EKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 333 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
++.....|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777788888999999999999999999999998765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-10 Score=109.99 Aligned_cols=224 Identities=9% Similarity=0.009 Sum_probs=144.5
Q ss_pred HHHHHHhCCChHHHHHHHHhhhhCC---CC----hhHHHHHHHHHhccCChHHHHHHHHHHHHcC--C---C-CchHHHH
Q 043142 114 LIDMYAKCSCVVNARQVFDKILERD---PS----EATLVTVISASADIAALPQGRELHGFSWRHR--F---E-LNVKVKT 180 (512)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~~---pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~---~-~~~~~~~ 180 (512)
....+...|++++|...|++..+.. ++ ..++..+...+...|+++.|...+..+.+.. . . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3445566777777777777665431 22 2345556666666777777776666655421 1 1 1244666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHHcCChHHHHHHHHHhHH-----CCCCCHHHHHH
Q 043142 181 ALVDMYAKCGLVKVARNLFEQLRE-----KR----VVSWNAMITGYAMHGHSTKALDLFEKMKD-----EVQPDHITFVG 246 (512)
Q Consensus 181 ~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~p~~~t~~~ 246 (512)
.+...|...|++++|...|++..+ .+ ..+++.+...|...|++++|+..|++... ..+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 777888888888888887776542 12 24677777788888888888888888766 44433667777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhccCC---hHHHHHHHHhCCCCCCHh-HHHHHHHHH
Q 043142 247 VLSACSRGGLFDEGRMFFESMVRDYHIDPS---VQHYTCMVDLLGHSGR---LDEACDLIMQMRVKPDPG-VWGALLNSC 319 (512)
Q Consensus 247 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~~-~~~~ll~~~ 319 (512)
+...+.+.|++++|..++++..+...-.++ ...+..+...|...|+ +.+|+.++++.+..|+.. .+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 788888888888888888887654322112 3345556666667777 777777777764333333 555666667
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 043142 320 KLHGHVKLAELALEKLIE 337 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~ 337 (512)
...|++++|...++++.+
T Consensus 347 ~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 777777777777777654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-09 Score=105.29 Aligned_cols=194 Identities=13% Similarity=0.088 Sum_probs=120.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-------C---C-chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC----C-CHH
Q 043142 179 KTALVDMYAKCGLVKVARNLFEQLRE-------K---R-VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ----P-DHI 242 (512)
Q Consensus 179 ~~~li~~y~~~g~~~~A~~~~~~m~~-------~---~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----p-~~~ 242 (512)
...+...|...|++++|...+++..+ + . ...+..+...+...|++++|...+++...... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 34455566666666666666655431 1 1 13445566667777777777777777654322 1 124
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHH-----HHHHHHhccCChHHHHHHHHhCC-CCCC-----HhH
Q 043142 243 TFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYT-----CMVDLLGHSGRLDEACDLIMQMR-VKPD-----PGV 311 (512)
Q Consensus 243 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~ 311 (512)
++..+...+...|++++|...++.......-......+. ..+..+...|++++|...+++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 566666777777888888888777754311111111111 23344667888888888887772 1221 224
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----C-CchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 312 WGALLNSCKLHGHVKLAELALEKLIELEPH-----D-AGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 312 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+..+...+...|++++|...++++.+..+. + ...+..+..++...|+.++|...+++..+.
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 566777788888999998888888765321 1 135667788888899999999888877643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-10 Score=103.70 Aligned_cols=203 Identities=9% Similarity=0.033 Sum_probs=149.0
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHH
Q 043142 140 SEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITG 216 (512)
Q Consensus 140 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~ 216 (512)
|+..+......+...|++++|...|..+++...+++...+..+..+|.+.|++++|...|++..+. +...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 456777788888889999999999998888765466777777888899999999999998887543 35678888888
Q ss_pred HHHcCChHHHHHHHHHhHHCCCCCH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHH
Q 043142 217 YAMHGHSTKALDLFEKMKDEVQPDH-------ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS---VQHYTCMVDL 286 (512)
Q Consensus 217 ~~~~g~~~~A~~~~~~m~~~~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~ 286 (512)
|...|++++|+..|++..+..+.+. ..|..+...+...|++++|...|+..+ .+.|+ ...+..+...
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHHHH
Confidence 9999999999999998887766455 457777788888899999999998886 34665 4566777777
Q ss_pred HhccCChHHHHHHHHhCC-C-CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 043142 287 LGHSGRLDEACDLIMQMR-V-KPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNI 352 (512)
Q Consensus 287 ~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 352 (512)
|...|+. .++++. + ..+...|..+. ....+.+++|...++++++++|.++.+...+..+
T Consensus 163 ~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 163 FYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 7655432 233321 1 22333444333 2345668999999999999999987766655544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-10 Score=98.29 Aligned_cols=167 Identities=17% Similarity=0.077 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHh
Q 043142 176 VKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACS 252 (512)
Q Consensus 176 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~ 252 (512)
...+..+...|...|++++|...|+++.+. +...|..+...+...|++++|...++++.+..+.+...+..+...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 346677888899999999999999998753 45778889999999999999999999998877777888899999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHH
Q 043142 253 RGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAEL 330 (512)
Q Consensus 253 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~ 330 (512)
..|++++|..+++.+.+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999997542 336788889999999999999999999887 2233 56689999999999999999999
Q ss_pred HHHHHHhcCCCCCc
Q 043142 331 ALEKLIELEPHDAG 344 (512)
Q Consensus 331 ~~~~~~~~~p~~~~ 344 (512)
.++++++..|.++.
T Consensus 166 ~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 166 HFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHCCCG
T ss_pred HHHHHHHcCCCchh
Confidence 99999998887654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-10 Score=110.43 Aligned_cols=297 Identities=10% Similarity=0.030 Sum_probs=209.4
Q ss_pred CCCchhHHHHHHHHH--HccCChHHHHHHHccCCC--------CCchHHHHHHHH--HHhcCCchHHH---------HHH
Q 043142 3 FGFHPVLATKLVHLY--SACDCLHNAHQLFDRIPQ--------RNLFLWNVLIRA--YAWNGPYEVAI---------ELY 61 (512)
Q Consensus 3 ~~~~~~~~~~Li~~y--~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~--~~~~g~~~~A~---------~~~ 61 (512)
.-|+..+.+.|-..| .+.+++++|.++++++.+ +++..|-.++.. ....+....+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 346777888888888 889999999999887532 234444444432 11123333333 555
Q ss_pred HHHHHCCCCCCc-c---hHHHHHHHHhccCChHHHHHHHHHHHHhCC-CC----ChhHHHHHHHHHHhCCChHHHHHHHH
Q 043142 62 YRLLEIGLVPDN-F---TFPFALKACSALSAIEEGRRIHEDVIRNKW-ET----DVFVGAALIDMYAKCSCVVNARQVFD 132 (512)
Q Consensus 62 ~~m~~~g~~p~~-~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~ 132 (512)
+.+.....+.+. . .+......+...|++++|...+.+..+... .+ ...++..+...|...|+++.|...+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 555332111111 1 122234456788999999999999886521 12 24578889999999999999999998
Q ss_pred hhhhCC---CC-----hhHHHHHHHHHhccCChHHHHHHHHHHHHc----CCC-CchHHHHHHHHHHHhcCCHHHHHHHH
Q 043142 133 KILERD---PS-----EATLVTVISASADIAALPQGRELHGFSWRH----RFE-LNVKVKTALVDMYAKCGLVKVARNLF 199 (512)
Q Consensus 133 ~m~~~~---pd-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~y~~~g~~~~A~~~~ 199 (512)
+..+.. ++ ..++..+...+...|++++|...+..+++. +-+ ....++..+...|...|++++|...|
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 876532 22 246778888999999999999999988763 211 12457788999999999999999999
Q ss_pred HhcCC-----CC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC----C-CHHHHHHHHHHHhcCCC---HHHHHHH
Q 043142 200 EQLRE-----KR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ----P-DHITFVGVLSACSRGGL---FDEGRMF 263 (512)
Q Consensus 200 ~~m~~-----~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----p-~~~t~~~ll~a~~~~g~---~~~a~~~ 263 (512)
++..+ .+ ..++..+...|.+.|++++|...+++...... | ....+..+...+...++ +++|..+
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 88764 33 45778888999999999999999999876432 2 23345666667778888 7778777
Q ss_pred HHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 264 FESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 264 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
++.. +..| ....+..+...|.+.|++++|...|++.
T Consensus 326 ~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 326 FEKK----NLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhC----CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7763 2233 3456778999999999999999998875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.4e-09 Score=101.50 Aligned_cols=260 Identities=12% Similarity=0.113 Sum_probs=114.2
Q ss_pred HHHHccCChHHHHHHHccC----CCCCc----hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCC-CCc----chHHHHHH
Q 043142 15 HLYSACDCLHNAHQLFDRI----PQRNL----FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLV-PDN----FTFPFALK 81 (512)
Q Consensus 15 ~~y~~~g~~~~A~~~f~~~----~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~ 81 (512)
..+...|++++|...+++. +..+. .+++.+...+...|++++|...+++....... ++. .++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3444556666666555442 11111 13444445555556666666665554431100 011 11233444
Q ss_pred HHhccCChHHHHHHHHHHHHh----CCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhcc
Q 043142 82 ACSALSAIEEGRRIHEDVIRN----KWE--T-DVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADI 154 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~ 154 (512)
.+...|++++|.+.++..++. +.+ | ...++..+...|...|++++|...+++.....|..
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------- 168 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY------------- 168 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc-------------
Confidence 455555555555555554432 111 1 12233444555555555555555555544322210
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCc-hHHHH-----HHHHHHHcCChH
Q 043142 155 AALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR----EKRV-VSWNA-----MITGYAMHGHST 224 (512)
Q Consensus 155 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~-~~~~~-----li~~~~~~g~~~ 224 (512)
+.+....++..+...+...|++++|...+++.. ..+. ..|.. .+..+...|+++
T Consensus 169 ----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 232 (373)
T 1hz4_A 169 ----------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 232 (373)
T ss_dssp ----------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ----------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHH
Confidence 000012334444455555555555555554432 1111 11111 112244555555
Q ss_pred HHHHHHHHhHHCCC-CC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCCh-hHHHHHHHHHhccCChHHH
Q 043142 225 KALDLFEKMKDEVQ-PD---HITFVGVLSACSRGGLFDEGRMFFESMVRDY---HIDPSV-QHYTCMVDLLGHSGRLDEA 296 (512)
Q Consensus 225 ~A~~~~~~m~~~~~-p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~-~~~~~li~~~~~~g~~~~A 296 (512)
+|...+++...... +. ...+..+...+...|++++|...++...... +..++. ..+..+..++...|+.++|
T Consensus 233 ~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 312 (373)
T 1hz4_A 233 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 312 (373)
T ss_dssp HHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 55555555443222 11 1233444555555566666665555543221 111111 2445555566666666666
Q ss_pred HHHHHhC
Q 043142 297 CDLIMQM 303 (512)
Q Consensus 297 ~~~~~~m 303 (512)
...+++.
T Consensus 313 ~~~l~~a 319 (373)
T 1hz4_A 313 QRVLLDA 319 (373)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.5e-10 Score=101.08 Aligned_cols=190 Identities=11% Similarity=-0.025 Sum_probs=132.2
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHH
Q 043142 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLRE----KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLS 249 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~ 249 (512)
.++..+..+...|.+.|++++|...|+...+ ++...|..+...+...|++++|+..|++.....+.+...+..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3456777777888888888888888877542 455666667777888888888888888887766666677777888
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCCC-Ch-------hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC--H-hHHHHHHH
Q 043142 250 ACSRGGLFDEGRMFFESMVRDYHIDP-SV-------QHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD--P-GVWGALLN 317 (512)
Q Consensus 250 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~-~~~~~ll~ 317 (512)
++...|++++|...++..++. .| +. ..|..+...+.+.|++++|++.+++. ...|+ . ..|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 888888888888888887754 44 33 44666777777788888888888776 45565 3 35666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 318 SCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 318 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
.+.. .+...++++..+.+.++..|..+. ....+.+++|...+++..+..
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 6543 344556666666665544443332 344566799999999887754
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-08 Score=102.84 Aligned_cols=221 Identities=6% Similarity=-0.032 Sum_probs=163.7
Q ss_pred HHHHhhhhCCC-ChhHHHHHHHHHhccCChHHHH-HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 043142 129 QVFDKILERDP-SEATLVTVISASADIAALPQGR-ELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE-- 204 (512)
Q Consensus 129 ~~~~~m~~~~p-d~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-- 204 (512)
.+|+++....| +...|...+.-+...|+.+.|. .+++..+.. .+.+...+-.++...-+.|+++.|.++|+.+..
T Consensus 330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 330 YVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34444444444 2334555555556678888996 999999875 456777888899999999999999999998753
Q ss_pred -----------CC------------chHHHHHHHHHHHcCChHHHHHHHHHhHHC-CCCCHHHHHHHHHHHhc-CCCHHH
Q 043142 205 -----------KR------------VVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSR-GGLFDE 259 (512)
Q Consensus 205 -----------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~a~~~-~g~~~~ 259 (512)
|. ...|...+....+.|..+.|..+|.+..+. ..+....|...+..-.+ .++.+.
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~ 488 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKT 488 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHH
Confidence 21 235888888888889999999999999877 33334444433322233 356999
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC----CHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043142 260 GRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP----DPGVWGALLNSCKLHGHVKLAELALEK 334 (512)
Q Consensus 260 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~ 334 (512)
|..+|+..++.+ .-+...+...++.....|+.+.|..+|++. ...| ....|...+.--..+|+.+.+.++.++
T Consensus 489 Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R 566 (679)
T 4e6h_A 489 ACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKR 566 (679)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998763 235667788899889999999999999987 2233 234899999989999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHH
Q 043142 335 LIELEPHDAGNYVILSNIY 353 (512)
Q Consensus 335 ~~~~~p~~~~~~~~l~~~~ 353 (512)
+.+..|+++ ....+++-|
T Consensus 567 ~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 567 FFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHSTTCC-HHHHHHHHT
T ss_pred HHHhCCCCc-HHHHHHHHh
Confidence 999999875 333344433
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.5e-10 Score=115.81 Aligned_cols=160 Identities=9% Similarity=-0.014 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 043142 108 VFVGAALIDMYAKCSCVVNARQVFDKILERDPS-EATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMY 186 (512)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 186 (512)
...++.|...|.+.|++++|++.|++..+.+|+ ..++..+..++.+.|++++|.+.|+++++.. +.+...+..+..+|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 334444445555555555555555554444443 2334444444445555555555555444432 22345555566666
Q ss_pred HhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 043142 187 AKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMF 263 (512)
Q Consensus 187 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~ 263 (512)
.+.|++++|.+.|++..+ .+...|+.+...|...|++++|++.|++..+..+-+...+..+..++...|++++|.+.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~ 167 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 167 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHH
Confidence 666666666666655432 23455666666666666666666666666665555555666666666666666666666
Q ss_pred HHHHH
Q 043142 264 FESMV 268 (512)
Q Consensus 264 ~~~~~ 268 (512)
++++.
T Consensus 168 ~~kal 172 (723)
T 4gyw_A 168 MKKLV 172 (723)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=7.3e-10 Score=103.18 Aligned_cols=160 Identities=14% Similarity=0.032 Sum_probs=90.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHHCC----CC--CHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhcCCCCC----hh
Q 043142 210 WNAMITGYAMHGHSTKALDLFEKMKDEV----QP--DHITFVGVLSACSRG-GLFDEGRMFFESMVRDYHIDPS----VQ 278 (512)
Q Consensus 210 ~~~li~~~~~~g~~~~A~~~~~~m~~~~----~p--~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~ 278 (512)
|+.+...|...|++++|+..|++..... .+ -..++..+...+... |++++|...|++.++...-..+ ..
T Consensus 80 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~ 159 (292)
T 1qqe_A 80 YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 3444444444444444444444433211 11 123556666677774 7777777777776543110001 34
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-CCCCCH--------hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch----
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQM-RVKPDP--------GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGN---- 345 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~--------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---- 345 (512)
++..+...|.+.|++++|+..|++. ...|+. ..|..+..++...|++++|...+++.++++|.....
T Consensus 160 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 239 (292)
T 1qqe_A 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESN 239 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 5667777778888888888877766 222221 145667777888888888888888888888764432
Q ss_pred -HHHHHHHHH--hccChhHHHHHHHHH
Q 043142 346 -YVILSNIYA--RAANWEGVAKLRKLM 369 (512)
Q Consensus 346 -~~~l~~~~~--~~g~~~~a~~~~~~m 369 (512)
+..++.+|. ..+++++|.+.|+.+
T Consensus 240 ~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 240 FLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 334555554 456677777777544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-10 Score=106.29 Aligned_cols=196 Identities=15% Similarity=0.155 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----CchHHHHHHHHHHHcCChHHHHHHHHHhHHC------C-
Q 043142 176 VKVKTALVDMYAKCGLVKVARNLFEQLRE-------K----RVVSWNAMITGYAMHGHSTKALDLFEKMKDE------V- 237 (512)
Q Consensus 176 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~- 237 (512)
..++..+...|...|++++|...|++..+ + ...+|..+...|...|++++|++.|++.... .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 34444555555555555555555544321 0 1234555555555555555555555555432 1
Q ss_pred C-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-----CCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-------
Q 043142 238 Q-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDY-----HIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM------- 303 (512)
Q Consensus 238 ~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m------- 303 (512)
. ....++..+...+...|++++|..+++++.+.. +-.| ....+..+...|.+.|++++|..++++.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1 223445555566666666666666666554320 0022 2345556666666666666666666544
Q ss_pred ---CCCCCHh-HHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 304 ---RVKPDPG-VWGALLNSCKLHGH------VKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 304 ---~~~p~~~-~~~~ll~~~~~~g~------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
...+... .|..+.......+. +..+...++......|..+.++..++.+|...|++++|..++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0122222 23322222222222 22222222222222233445667777777777777777777776654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-09 Score=101.27 Aligned_cols=165 Identities=8% Similarity=0.019 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC-----C----chHHHHHHHHHHHc-CChHHHHHHHHHhHHCCC--CC----H
Q 043142 178 VKTALVDMYAKCGLVKVARNLFEQLREK-----R----VVSWNAMITGYAMH-GHSTKALDLFEKMKDEVQ--PD----H 241 (512)
Q Consensus 178 ~~~~li~~y~~~g~~~~A~~~~~~m~~~-----~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~--p~----~ 241 (512)
+++.+..+|.+.|++++|...|++..+. + ..+|+.+...|... |++++|+..|++.....+ .+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4444555555555555555555443210 1 23566666777775 777777777777654322 11 3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCh-----hHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-----
Q 043142 242 ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSV-----QHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG----- 310 (512)
Q Consensus 242 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----- 310 (512)
.++..+...+...|++++|...|+...+...-.+.. ..+..+..++...|++++|+..+++. .+.|+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 456667777777777777777777776431111111 14566666777777788887777776 3344322
Q ss_pred -HHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCC
Q 043142 311 -VWGALLNSCK--LHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 311 -~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
.+..++.++. ..+++++|...|+++.+++|..
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2334445443 3456777777777766666643
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.3e-09 Score=96.88 Aligned_cols=182 Identities=9% Similarity=-0.018 Sum_probs=121.6
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---C---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CC-HHHH
Q 043142 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLREK---R---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PD-HITF 244 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~-~~t~ 244 (512)
.+...+..+...+.+.|++++|...|+.+.+. + ...|..+...|.+.|++++|+..|++..+..+ |. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34555666677777777777777777776542 2 34566677777777777777777777776544 22 3445
Q ss_pred HHHHHHHhc--------CCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHH
Q 043142 245 VGVLSACSR--------GGLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGAL 315 (512)
Q Consensus 245 ~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 315 (512)
..+..++.. .|++++|...|+.+++. .|+ ......+..... ....+ ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~-------~~~~~--------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRE-------LRAKL--------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHH-------HHHHH--------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHH-------HHHHH--------HHHHHHH
Confidence 556666666 77777777777777654 342 222222111100 00000 1124567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhc----------cChhHHHHHHHHHHhCC
Q 043142 316 LNSCKLHGHVKLAELALEKLIELEPHDA---GNYVILSNIYARA----------ANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 316 l~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g 373 (512)
...+...|++++|+..|+++++..|+++ ..+..++.+|... |++++|...++++.+..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 7889999999999999999999998754 4788888899877 89999999999987654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-08 Score=92.49 Aligned_cols=174 Identities=10% Similarity=-0.010 Sum_probs=98.4
Q ss_pred HHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043142 195 ARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLFDEGRMFFESMVR 269 (512)
Q Consensus 195 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 269 (512)
|...|++..+ ++..++..+..++...|++++|++++.+....++ -+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4555555442 2333444555666666777777777766655443 3445555666666677777777777766643
Q ss_pred hcCCCC-----ChhHHHHHHHH--Hhc--cCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 043142 270 DYHIDP-----SVQHYTCMVDL--LGH--SGRLDEACDLIMQM-RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIEL- 338 (512)
Q Consensus 270 ~~~~~p-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~- 338 (512)
. .| +..+...|+.+ ... .+++.+|..+|+++ ...|+..+-..++.++...|++++|++.++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 44 23334444433 222 23667777777666 22344223333444666677777777777766554
Q ss_pred ---------CCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 339 ---------EPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 339 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
+|.++.++..++..+...|+ +|.++++++.+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 36666666666655555665 6666666666543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-10 Score=95.00 Aligned_cols=139 Identities=7% Similarity=0.020 Sum_probs=93.4
Q ss_pred HHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHH
Q 043142 217 YAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDE 295 (512)
Q Consensus 217 ~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 295 (512)
+...|+.++|+..+++.....+.+...+..+...|.+.|++++|+..|++.++. .| +...|..+..+|.+.|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchHH
Confidence 344555666666666654433333444555666677777777777777776643 45 56667777777777777777
Q ss_pred HHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCCchHHHHHHHHHhccC
Q 043142 296 ACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELA-LEKLIELEPHDAGNYVILSNIYARAAN 358 (512)
Q Consensus 296 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 358 (512)
|+..|++. .+.|+ ...|..+...+...|++++|.+. ++++++++|.++.+|......+...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777665 34454 45777788888888887765554 588888999888888888777777664
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.9e-09 Score=99.22 Aligned_cols=87 Identities=16% Similarity=0.040 Sum_probs=48.4
Q ss_pred hcCCchHHHHHHHHHHHC-------CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh------CC-CCChhHHHHHH
Q 043142 50 WNGPYEVAIELYYRLLEI-------GLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRN------KW-ETDVFVGAALI 115 (512)
Q Consensus 50 ~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li 115 (512)
..|++++|+.+|++..+. ..+....++..+...+...|++++|.+.+..+++. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666665431 11112334555666666666666666666666544 11 12344556666
Q ss_pred HHHHhCCChHHHHHHHHhhhh
Q 043142 116 DMYAKCSCVVNARQVFDKILE 136 (512)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~ 136 (512)
..|...|++++|...|++..+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~ 113 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALE 113 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 666666666666666666543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.7e-09 Score=94.78 Aligned_cols=200 Identities=10% Similarity=0.033 Sum_probs=140.5
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----chHH
Q 043142 140 SEATLVTVISASADIAALPQGRELHGFSWRHRFELN---VKVKTALVDMYAKCGLVKVARNLFEQLRE--KR----VVSW 210 (512)
Q Consensus 140 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~~~ 210 (512)
+...+......+...|++++|...|..+++.. +.+ ...+..+..+|.+.|++++|...|+...+ |+ ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45677788888999999999999999998864 223 67888899999999999999999999764 21 3467
Q ss_pred HHHHHHHHH--------cCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 043142 211 NAMITGYAM--------HGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTC 282 (512)
Q Consensus 211 ~~li~~~~~--------~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 282 (512)
..+..++.. .|++++|+..|++.....+.+......+. .+..+... ....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~--------------~~~~~~~~-----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQ--------------KIRELRAK-----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHH--------------HHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHH--------------HHHHHHHH-----HHHHHHH
Confidence 778888888 99999999999999887663322222211 11111000 0122455
Q ss_pred HHHHHhccCChHHHHHHHHhC-CCCCC----HhHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCCc---
Q 043142 283 MVDLLGHSGRLDEACDLIMQM-RVKPD----PGVWGALLNSCKLH----------GHVKLAELALEKLIELEPHDAG--- 344 (512)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~--- 344 (512)
+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 677788888888888888776 22333 23666677777655 8899999999999999998863
Q ss_pred hHHHHHHHHHhccCh
Q 043142 345 NYVILSNIYARAANW 359 (512)
Q Consensus 345 ~~~~l~~~~~~~g~~ 359 (512)
+...+...+.+.+++
T Consensus 234 a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 234 AEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 333344444444433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.04 E-value=9.8e-10 Score=114.78 Aligned_cols=168 Identities=11% Similarity=-0.002 Sum_probs=130.5
Q ss_pred HhcCCHHHHHHHHHhcC--------C---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCC
Q 043142 187 AKCGLVKVARNLFEQLR--------E---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGG 255 (512)
Q Consensus 187 ~~~g~~~~A~~~~~~m~--------~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g 255 (512)
...|++++|.+.|++.. + .+...|..+...|.+.|++++|++.|++..+..+.+...+..+..++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 66788888888888765 2 345677888888888888888888888888776667778888888888888
Q ss_pred CHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHH
Q 043142 256 LFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELAL 332 (512)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~ 332 (512)
++++|...|++.++. .| +...+..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|...|
T Consensus 482 ~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 482 DYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp CHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888744 56 56778888888888888888 8888776 3444 3457888888888888888888888
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhccC
Q 043142 333 EKLIELEPHDAGNYVILSNIYARAAN 358 (512)
Q Consensus 333 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 358 (512)
+++++++|.+..++..+..++...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888888888888888888866555
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-08 Score=82.11 Aligned_cols=128 Identities=19% Similarity=0.344 Sum_probs=63.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc
Q 043142 210 WNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGH 289 (512)
Q Consensus 210 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 289 (512)
|..+...+...|++++|+.+|+++....+.+...+..+...+...|++++|..+++.+.+. .|
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~-------------- 66 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DP-------------- 66 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT--------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CC--------------
Confidence 4444445555555555555555554443334444444444455555555555555544322 11
Q ss_pred cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 043142 290 SGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLM 369 (512)
Q Consensus 290 ~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 369 (512)
.+...|..+...+...|++++|.+.++++.+..|.++..+..++..|...|++++|.+.++++
T Consensus 67 -----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 67 -----------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp -----------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred -----------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 122344444444555555555555555555555555555555555555555555555555555
Q ss_pred Hh
Q 043142 370 ID 371 (512)
Q Consensus 370 ~~ 371 (512)
.+
T Consensus 130 ~~ 131 (136)
T 2fo7_A 130 LE 131 (136)
T ss_dssp HH
T ss_pred Hc
Confidence 43
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.8e-08 Score=88.45 Aligned_cols=182 Identities=12% Similarity=0.021 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCH-HHHHH
Q 043142 176 VKVKTALVDMYAKCGLVKVARNLFEQLRE--KR----VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDH-ITFVG 246 (512)
Q Consensus 176 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~-~t~~~ 246 (512)
...+..+...+.+.|++++|...|+.+.+ |+ ...+..+..+|.+.|++++|+..|++..+..+ +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34555667778888888888888888753 22 24677777888888888888888888877655 221 23444
Q ss_pred HHHHHhc------------------CCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhccCChHHHHHHHHhCCCCC
Q 043142 247 VLSACSR------------------GGLFDEGRMFFESMVRDYHIDPSV-QHYTCMVDLLGHSGRLDEACDLIMQMRVKP 307 (512)
Q Consensus 247 ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 307 (512)
+..++.. .|++++|...|+.+++. .|+. ..+.++... +.+.. ..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~------~~---- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKD------RL---- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHH------HH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHH------HH----
Confidence 4444433 45666666666666533 3422 222111100 00000 00
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 308 DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDA---GNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
......+...+...|++++|...|+++++..|+++ .++..+..+|.+.|++++|.+.++.+...+..
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00113456678899999999999999999999875 56889999999999999999999999877653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.3e-09 Score=96.48 Aligned_cols=175 Identities=10% Similarity=0.004 Sum_probs=137.3
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 043142 193 KVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYH 272 (512)
Q Consensus 193 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 272 (512)
+.....+......+...+..+...+.+.|++++|...|++.....+.+...+..+...+...|++++|...++.+...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 344445555444455667777788888999999999999998887777788888899999999999999999988643
Q ss_pred CCCChhHHHHH-HHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CchHH
Q 043142 273 IDPSVQHYTCM-VDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHD--AGNYV 347 (512)
Q Consensus 273 ~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~ 347 (512)
.|+....... ...+.+.++.++|...+++. ...| +...+..+...+...|++++|...++++++.+|.+ ...+.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 5654433332 23366777888888888776 3345 45688999999999999999999999999999987 78899
Q ss_pred HHHHHHHhccChhHHHHHHHHHH
Q 043142 348 ILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
.|+.+|...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999988887653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.01 E-value=3.2e-08 Score=90.75 Aligned_cols=232 Identities=9% Similarity=0.012 Sum_probs=138.5
Q ss_pred ccCChHHHHHHHccCCCCCch-HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHH
Q 043142 19 ACDCLHNAHQLFDRIPQRNLF-LWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHE 97 (512)
Q Consensus 19 ~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 97 (512)
-.|.+..++.-...+.+.+.. .-.-+.++|...|++.... .-.|....+..+.. +...+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~-~~~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQ-FLDTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHH-HHTTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHH-Hhccc----HHHHHH
Confidence 367777777765555432222 2222447777777776311 11222222222222 22222 556666
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCC---ChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 043142 98 DVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDP---SEATLVTVISASADIAALPQGRELHGFSWRHRFEL 174 (512)
Q Consensus 98 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p---d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 174 (512)
+.++.+ +++......+...|...|++++|++++.+....+| +...+..++..+.+.|+.+.|.+.++.|.+. .|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cc
Confidence 666554 44555555677777778888888888887766665 3345666777777888888888888877665 34
Q ss_pred -----chHHHHHHHHH--HHh--cCCHHHHHHHHHhcCCCCch--HHHHHHHHHHHcCChHHHHHHHHHhHHC-------
Q 043142 175 -----NVKVKTALVDM--YAK--CGLVKVARNLFEQLREKRVV--SWNAMITGYAMHGHSTKALDLFEKMKDE------- 236 (512)
Q Consensus 175 -----~~~~~~~li~~--y~~--~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~------- 236 (512)
+..+...|+.+ ... .++.++|..+|+++.+.... +-..++.++.+.|++++|.+.++.+.+.
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k 247 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQK 247 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTC
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccc
Confidence 23444444444 222 33788888888887654332 3344445777888888888888766543
Q ss_pred ---CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043142 237 ---VQPDHITFVGVLSACSRGGLFDEGRMFFESMVR 269 (512)
Q Consensus 237 ---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 269 (512)
.+.|..++..++......|+ +|.++++++.+
T Consensus 248 ~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 248 ENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 13455666566655555666 77788888763
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-08 Score=82.03 Aligned_cols=96 Identities=18% Similarity=0.262 Sum_probs=82.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-CCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQM-RVK-PDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARA 356 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 356 (512)
.+..+...+.+.|++++|..+++++ ... .+...|..+...+...|++++|...++++.+..|.++..+..++..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4667778888888888888888876 222 35668888889999999999999999999999999989999999999999
Q ss_pred cChhHHHHHHHHHHhCCC
Q 043142 357 ANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 357 g~~~~a~~~~~~m~~~g~ 374 (512)
|++++|.+.++++.+...
T Consensus 83 ~~~~~A~~~~~~~~~~~~ 100 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDP 100 (136)
T ss_dssp TCHHHHHHHHHHHHHHCT
T ss_pred cCHHHHHHHHHHHHHhCC
Confidence 999999999999887543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-08 Score=104.43 Aligned_cols=189 Identities=12% Similarity=0.035 Sum_probs=151.6
Q ss_pred hccCChHHHHHHHHHHH--------HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHc
Q 043142 152 ADIAALPQGRELHGFSW--------RHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMH 220 (512)
Q Consensus 152 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~ 220 (512)
...|++++|.+.++.++ +. .+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999988 33 245677888999999999999999999998764 3567899999999999
Q ss_pred CChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHH
Q 043142 221 GHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDL 299 (512)
Q Consensus 221 g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 299 (512)
|++++|+..|++..+..+.+...+..+..++...|++++ ...|++.++. .| +...|..+..+|.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998877778888999999999999999 9999999854 56 678899999999999999999999
Q ss_pred HHhC-CCCCCHh-HHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCCCCCch
Q 043142 300 IMQM-RVKPDPG-VWGALLNSCKLHGH-----VKLAELALEKLIELEPHDAGN 345 (512)
Q Consensus 300 ~~~m-~~~p~~~-~~~~ll~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~ 345 (512)
|++. ...|+.. .|..+..++...++ .+...+..+...+..+.++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 9998 5677754 77777777766555 344444444554554444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.7e-09 Score=88.19 Aligned_cols=156 Identities=11% Similarity=0.089 Sum_probs=96.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH-Hhcc
Q 043142 212 AMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDL-LGHS 290 (512)
Q Consensus 212 ~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~ 290 (512)
.+...+.+.|++++|+..|++..+..+.+...+..+..++...|++++|...++.+.+. .|+...+..+... +.+.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 34444555555555555555555444444555555555555666666666666555432 2222222111111 1111
Q ss_pred CChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhccChhHHHHHH
Q 043142 291 GRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHD--AGNYVILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 291 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~ 366 (512)
+...+|+..+++. ...| +...+..+...+...|++++|...++++++.+|.. +..+..+..++...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223355566555 3345 45688888888899999999999999999988764 558888899999999999998888
Q ss_pred HHHH
Q 043142 367 KLMI 370 (512)
Q Consensus 367 ~~m~ 370 (512)
++..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.4e-08 Score=93.55 Aligned_cols=154 Identities=10% Similarity=0.014 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhHHC----CCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC----Ch
Q 043142 208 VSWNAMITGYAMHGHSTKALDLFEKMKDE----VQP--DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP----SV 277 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~ 277 (512)
.+|+.+...|...|++++|+..|++.... +.| -..++..+...+.. |++++|...|++.++...-.. ..
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 35666667777777777777777765432 222 23567777788888 999999988888764321111 14
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CC---CCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch----
Q 043142 278 QHYTCMVDLLGHSGRLDEACDLIMQM-RV---KPD----PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGN---- 345 (512)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---- 345 (512)
.++..+...|.+.|++++|+..|++. .+ .++ ...+..+...+...|++++|...|++.+ ..|....+
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~ 234 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCA 234 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHH
Confidence 57778888899999999999988876 11 112 1256667777788899999999999999 88865432
Q ss_pred -HHHHHHHHHhccChhHHHH
Q 043142 346 -YVILSNIYARAANWEGVAK 364 (512)
Q Consensus 346 -~~~l~~~~~~~g~~~~a~~ 364 (512)
...++.++ ..|+.+.+.+
T Consensus 235 ~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 235 ALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHH-HhcCHHHHHH
Confidence 33445545 5666665555
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-08 Score=104.89 Aligned_cols=159 Identities=10% Similarity=0.044 Sum_probs=126.8
Q ss_pred cCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 043142 189 CGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFE 265 (512)
Q Consensus 189 ~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 265 (512)
.|++++|.+.|++..+. +...|..+...|.+.|++++|++.|++..+..+.+...+..+..++...|++++|...++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999987753 367899999999999999999999999998877778899999999999999999999999
Q ss_pred HHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHc---CCHHHHHHHHHHHHhcC
Q 043142 266 SMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLH---GHVKLAELALEKLIELE 339 (512)
Q Consensus 266 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~~ 339 (512)
+..+. .| +...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++.+
T Consensus 82 ~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 82 QASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99854 55 6788999999999999999999999987 3344 456888999999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 043142 340 PHDAGNYVILS 350 (512)
Q Consensus 340 p~~~~~~~~l~ 350 (512)
|.+...|..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887766
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.3e-08 Score=86.75 Aligned_cols=126 Identities=10% Similarity=0.032 Sum_probs=97.2
Q ss_pred HHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccC
Q 043142 213 MITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSG 291 (512)
Q Consensus 213 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 291 (512)
+...|.+.|++++|+..|++..+..+.+...+..+..++...|++++|...|+++++. .| +...+..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHh
Confidence 7888899999999999999998887778888889999999999999999999998754 66 6778888888876655
Q ss_pred C--hHHHHHHHHhCCCCCCHh--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 292 R--LDEACDLIMQMRVKPDPG--VWGALLNSCKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 292 ~--~~~A~~~~~~m~~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
. ...+...++... .|+.. .|..+..++...|++++|+..|++++++.|++
T Consensus 137 ~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 137 EQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 4 344566666653 34433 44445666777889999999999999999863
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=7.5e-08 Score=89.18 Aligned_cols=161 Identities=11% Similarity=0.014 Sum_probs=113.2
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 043142 105 ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVD 184 (512)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 184 (512)
+.+...+..+...+.+.|++++|...|++..+.+| .+...+..+..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P----------------------------------~~~~a~~~la~ 159 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN----------------------------------QNGEIGLLLAE 159 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----------------------------------SCHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC----------------------------------cchhHHHHHHH
Confidence 33444445555555555666666665555555443 35566777888
Q ss_pred HHHhcCCHHHHHHHHHhcCCC--Cch-HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 043142 185 MYAKCGLVKVARNLFEQLREK--RVV-SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGR 261 (512)
Q Consensus 185 ~y~~~g~~~~A~~~~~~m~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~ 261 (512)
.|.+.|++++|...|+++... +.. .+......+.+.++.++|+..|++.....+.+...+..+...+...|++++|.
T Consensus 160 ~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~ 239 (287)
T 3qou_A 160 TLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEAL 239 (287)
T ss_dssp HHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHH
Confidence 888888888888888887653 322 22222334667777888888888888877777888888888888999999999
Q ss_pred HHHHHHHHhcCCCCC---hhHHHHHHHHHhccCChHHHHHHHHh
Q 043142 262 MFFESMVRDYHIDPS---VQHYTCMVDLLGHSGRLDEACDLIMQ 302 (512)
Q Consensus 262 ~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (512)
..|..+++. .|+ ...+..++..|...|+.++|...+++
T Consensus 240 ~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 240 ELLFGHLRX---DLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHH---CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhc---ccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 999888765 453 56778888888888888887777654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-06 Score=80.77 Aligned_cols=158 Identities=9% Similarity=0.038 Sum_probs=114.9
Q ss_pred CCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChH--HHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCC------HH
Q 043142 190 GLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHST--KALDLFEKMKDEVQPDHITFVGVLSACSRGGL------FD 258 (512)
Q Consensus 190 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~------~~ 258 (512)
++++++.++++.+.+ ++-.+|+--...+.+.|.++ ++++.++++.+..+-|...|.--.....+.+. ++
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 677788887777764 34567777777777778777 88888888888877777777766666666665 78
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHH-HHHHHHhC-CC----CCCHhHHHHHHHHHHHcCCHHHHHHH
Q 043142 259 EGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDE-ACDLIMQM-RV----KPDPGVWGALLNSCKLHGHVKLAELA 331 (512)
Q Consensus 259 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~A~~~ 331 (512)
++.+.+..++.. .| |...|+-+-..+.+.|+..+ +..+.++. .. ..+...+..+...+.+.|+.++|.++
T Consensus 204 eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 204 EELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 888888888754 56 77788888778877777444 44566655 11 23556788888888888888888888
Q ss_pred HHHHHh-cCCCCCchHHHHH
Q 043142 332 LEKLIE-LEPHDAGNYVILS 350 (512)
Q Consensus 332 ~~~~~~-~~p~~~~~~~~l~ 350 (512)
++.+.+ .+|.....|...+
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHH
Confidence 888886 6887766665443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.9e-08 Score=101.63 Aligned_cols=146 Identities=11% Similarity=-0.036 Sum_probs=109.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHH
Q 043142 154 IAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLF 230 (512)
Q Consensus 154 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 230 (512)
.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|++..+. +...|..+...|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467888999998887764 445778888999999999999999999987653 3578888899999999999999999
Q ss_pred HHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhcc---CChHHHHHHHHhC
Q 043142 231 EKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHS---GRLDEACDLIMQM 303 (512)
Q Consensus 231 ~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~m 303 (512)
++..+..+.+...+..+..++...|++++|...|++..+. .| +...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9998877777888889999999999999999999998754 45 577888888999998 9999999998877
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.3e-08 Score=84.22 Aligned_cols=157 Identities=11% Similarity=-0.034 Sum_probs=118.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHH-H-H
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALK-A-C 83 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~-~ 83 (512)
....+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .|+.. +..+.. . +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHH
Confidence 455677788899999999999999864 36788999999999999999999999988664 34332 222221 1 1
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC---hhHHHHHHHHHhccCChHHH
Q 043142 84 SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS---EATLVTVISASADIAALPQG 160 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd---~~t~~~ll~~~~~~~~~~~a 160 (512)
...+....+.+.++..++.. +.+...+..+...|.+.|++++|...|+++.+.+|+ ...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22223334678888888775 456788888999999999999999999999988875 34677777788888888888
Q ss_pred HHHHHHHHH
Q 043142 161 RELHGFSWR 169 (512)
Q Consensus 161 ~~~~~~~~~ 169 (512)
...|+..+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.84 E-value=9.7e-08 Score=83.76 Aligned_cols=132 Identities=12% Similarity=-0.009 Sum_probs=67.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCC
Q 043142 180 TALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGL 256 (512)
Q Consensus 180 ~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~ 256 (512)
+.+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+..+.+..++..+..++...|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 3455566666666666666665442 2345566666666666666666666666666555555555555555544332
Q ss_pred --HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHhHHHH
Q 043142 257 --FDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGVWGA 314 (512)
Q Consensus 257 --~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 314 (512)
.+.+...+.... ...|....+..+..++...|++++|...|++. ...|+......
T Consensus 138 ~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 195 (208)
T 3urz_A 138 QEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 223333333332 11222222233344455556666666666655 45565544433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-08 Score=83.10 Aligned_cols=125 Identities=7% Similarity=-0.003 Sum_probs=73.7
Q ss_pred HHHHHHccCChHHHHHHHccCCCC---CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CcchHHHHHHHHhccCC
Q 043142 13 LVHLYSACDCLHNAHQLFDRIPQR---NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVP-DNFTFPFALKACSALSA 88 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~ 88 (512)
|..+|...|++++|+..|+...+. +...+-.+...|.+.|++++|++.|++.++. .| +..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 344555666677777666665432 3445555666677777777777777776653 23 33456666666666666
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHH-HHhhhhCCCC
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQV-FDKILERDPS 140 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~pd 140 (512)
+++|...|+..++.. +.+..++..+...|.+.|++++|.+. +++..+.+|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 666666666666654 33555666666666666666555443 3556555554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.8e-07 Score=79.54 Aligned_cols=161 Identities=12% Similarity=-0.010 Sum_probs=107.2
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHhcCCCCChhHHH
Q 043142 206 RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGG----LFDEGRMFFESMVRDYHIDPSVQHYT 281 (512)
Q Consensus 206 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~~ 281 (512)
++.++..+...|...+++++|+..|++..+.+ +...+..|...|.. + ++++|..+|+...+. -+...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHHH
Confidence 34555555555666666666666666665543 33444455555555 5 677777777776432 2455666
Q ss_pred HHHHHHhc----cCChHHHHHHHHhC-CCCCC---HhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 043142 282 CMVDLLGH----SGRLDEACDLIMQM-RVKPD---PGVWGALLNSCKL----HGHVKLAELALEKLIELEPHDAGNYVIL 349 (512)
Q Consensus 282 ~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l 349 (512)
.|..+|.. .+++++|+++|++. ...|+ ...+..|...|.. .+++++|...|+++.+. |.++.++..|
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~L 168 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWA 168 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHH
Confidence 66666666 67778888877776 33332 5677777777777 77888888888888877 5556677788
Q ss_pred HHHHHhc-c-----ChhHHHHHHHHHHhCCC
Q 043142 350 SNIYARA-A-----NWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 350 ~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 374 (512)
..+|... | ++++|...+++..+.|.
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8888654 3 78888888888877664
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.79 E-value=3e-08 Score=81.81 Aligned_cols=102 Identities=12% Similarity=0.002 Sum_probs=87.9
Q ss_pred CCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 043142 272 HIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVI 348 (512)
Q Consensus 272 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 348 (512)
.+.| +...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4566 5667778888889999999999999887 3445 45689999999999999999999999999999999999999
Q ss_pred HHHHHHhccChhHHHHHHHHHHhCC
Q 043142 349 LSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 349 l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
+..+|...|++++|...|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987754
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.78 E-value=3e-07 Score=81.69 Aligned_cols=69 Identities=13% Similarity=-0.006 Sum_probs=52.8
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh
Q 043142 74 FTFPFALKACSALSAIEEGRRIHEDVIRNKWET--DVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA 142 (512)
Q Consensus 74 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~ 142 (512)
..+..+...+...|++++|...|+.+++..... ....+..+..+|.+.|++++|+..|++..+..|+..
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 345556667888899999999999988864221 135677788889999999999999999988887653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.5e-08 Score=90.60 Aligned_cols=170 Identities=12% Similarity=0.014 Sum_probs=128.1
Q ss_pred cCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCC----C--CCHHHHHHHHHHHhcCCCHHHHHH
Q 043142 189 CGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEV----Q--PDHITFVGVLSACSRGGLFDEGRM 262 (512)
Q Consensus 189 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~--p~~~t~~~ll~a~~~~g~~~~a~~ 262 (512)
.++++.|...|... ...|...|++++|...|.+..... . .-..+|..+...|...|++++|..
T Consensus 29 ~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 46777777776553 456777788888888887765432 1 123578888889999999999999
Q ss_pred HHHHHHHhcCC--CC--ChhHHHHHHHHHhccCChHHHHHHHHhC-CCC---CC----HhHHHHHHHHHHHcCCHHHHHH
Q 043142 263 FFESMVRDYHI--DP--SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK---PD----PGVWGALLNSCKLHGHVKLAEL 330 (512)
Q Consensus 263 ~~~~~~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~---p~----~~~~~~ll~~~~~~g~~~~A~~ 330 (512)
.|++.++.+.- .| ...++..+...|.+ |++++|+..+++. .+. .+ ..++..+...+...|++++|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99987654211 12 24577888889988 9999999999876 111 11 3478888999999999999999
Q ss_pred HHHHHHhcCCCCC------chHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 331 ALEKLIELEPHDA------GNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 331 ~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
.|+++++..|.+. ..+..++..+...|++++|...+++..
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999998765432 256667778888899999999999887
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-06 Score=81.52 Aligned_cols=160 Identities=9% Similarity=-0.005 Sum_probs=118.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHHCCC--CCHH----HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC----hhHHH
Q 043142 212 AMITGYAMHGHSTKALDLFEKMKDEVQ--PDHI----TFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS----VQHYT 281 (512)
Q Consensus 212 ~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 281 (512)
..+..+...|++++|..++++..+... |+.. .+..+...+...+++++|...|+.+.+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888889999999888876544 3322 2334666777788999999999988753221223 23688
Q ss_pred HHHHHHhccCChHHHHHHHHhCC-----C---CCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CCchH
Q 043142 282 CMVDLLGHSGRLDEACDLIMQMR-----V---KPDP-GVWGALLNSCKLHGHVKLAELALEKLIELEPH------DAGNY 346 (512)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m~-----~---~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~ 346 (512)
.+...|...|++++|+..++++- . .+.. .++..+...|...|++++|...++++++..+. -+.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88889999999999988887761 1 1222 27888999999999999999999999876432 25688
Q ss_pred HHHHHHHHhccC-hhHHHHHHHHHHh
Q 043142 347 VILSNIYARAAN-WEGVAKLRKLMID 371 (512)
Q Consensus 347 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 371 (512)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999999887753
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.77 E-value=9.8e-07 Score=77.51 Aligned_cols=168 Identities=13% Similarity=0.014 Sum_probs=89.3
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccC----ChHHHHHHHHHHH
Q 043142 93 RRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIA----ALPQGRELHGFSW 168 (512)
Q Consensus 93 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~----~~~~a~~~~~~~~ 168 (512)
.+.|.+..+.| ++..+..|...|...+++++|++.|++..+.+ +...+..+...+.. + +.++|...+....
T Consensus 6 ~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 6 GSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp THHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 34444444432 34444445555555555555555555554432 33344444444444 3 4555555555555
Q ss_pred HcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcCCCC-----chHHHHHHHHHHH----cCChHHHHHHHHHhHH
Q 043142 169 RHRFELNVKVKTALVDMYAK----CGLVKVARNLFEQLREKR-----VVSWNAMITGYAM----HGHSTKALDLFEKMKD 235 (512)
Q Consensus 169 ~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 235 (512)
+.| +...+..|..+|.. .+++++|...|++..+.+ +.++..|...|.. .++.++|+..|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 443 34455556666655 666777777776665543 3566666666666 5666777777776665
Q ss_pred CCCCCHHHHHHHHHHHhcC------CCHHHHHHHHHHHHH
Q 043142 236 EVQPDHITFVGVLSACSRG------GLFDEGRMFFESMVR 269 (512)
Q Consensus 236 ~~~p~~~t~~~ll~a~~~~------g~~~~a~~~~~~~~~ 269 (512)
. .++...+..|...|... .++++|...|+...+
T Consensus 158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 5 12222344444444432 266777777766653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.8e-07 Score=80.89 Aligned_cols=132 Identities=9% Similarity=-0.077 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC
Q 043142 8 VLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALS 87 (512)
Q Consensus 8 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 87 (512)
..+..+...|.+.|++++|.+.|++...++...|..+...|.+.|++++|+..|++..... +.+...+..+..++...|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 3455667778888999999999998888888889999999999999999999999887753 224557778888888899
Q ss_pred ChHHHHHHHHHHHHhCCCCC----------------hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh
Q 043142 88 AIEEGRRIHEDVIRNKWETD----------------VFVGAALIDMYAKCSCVVNARQVFDKILERDPSE 141 (512)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~ 141 (512)
++++|.+.++..++.. +.+ ..++..+...|.+.|++++|...|++..+.+|+.
T Consensus 86 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999998888754 222 2677788888888899999998888888887754
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-06 Score=86.93 Aligned_cols=168 Identities=10% Similarity=-0.055 Sum_probs=100.3
Q ss_pred HHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043142 193 KVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVR 269 (512)
Q Consensus 193 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 269 (512)
+.+..+|+++.. .....|...+.-+.+.|+.++|..+|++.... + +...+.. ++......++ +++.+.+
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~---~y~~~~e~~~---~~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSL---YYGLVMDEEA---VYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHH---HHHHHTTCTH---HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHH---HHHhhcchhH---HHHHHHH
Confidence 345566666543 23566777777777788888888888888777 4 3222211 1111111111 1222222
Q ss_pred hcC--------CCC---ChhHHHHHHHHHhccCChHHHHHHHHhCCCCCC--HhHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 043142 270 DYH--------IDP---SVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPD--PGVWGALLNSCK-LHGHVKLAELALEKL 335 (512)
Q Consensus 270 ~~~--------~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~ll~~~~-~~g~~~~A~~~~~~~ 335 (512)
.+- ..+ ....|...+..+.+.+..+.|..+|++.. .|. ...|......-. ..++.+.|..+|+.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELG-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 210 001 12456666777777788888888888872 232 233332221112 233688899999988
Q ss_pred HhcCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 043142 336 IELEPHDAGNYVILSNIYARAANWEGVAKLRKLM 369 (512)
Q Consensus 336 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 369 (512)
++..|+++..+...++...+.|+.+.|+.+|++.
T Consensus 347 l~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 347 LLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8877877776677777778888888888888886
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.7e-07 Score=80.09 Aligned_cols=145 Identities=12% Similarity=-0.056 Sum_probs=104.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHH
Q 043142 179 KTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFD 258 (512)
Q Consensus 179 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~ 258 (512)
+..+...|.+.|++++|...|++...++...|..+...|...|++++|+..|++.....+.+...+..+..++...|+++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence 44566777788888888888888877777788888888888888888888888887776666777778888888888888
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 043142 259 EGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDP-GVWGALLNSCKLHGHVKLAELALEKLIE 337 (512)
Q Consensus 259 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 337 (512)
+|...|+...+. .|+.... .+...| +...|+. ..|..+...+...|++++|...++++++
T Consensus 89 ~A~~~~~~al~~---~~~~~~~-----~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQ---LRGNQLI-----DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHT---TTTCSEE-----ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh---CCCccHH-----HHHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 888888887643 2321100 000000 0123333 4777888888899999999999999999
Q ss_pred cCCCC
Q 043142 338 LEPHD 342 (512)
Q Consensus 338 ~~p~~ 342 (512)
..|.+
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 88865
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.75 E-value=4.4e-08 Score=90.45 Aligned_cols=192 Identities=8% Similarity=-0.064 Sum_probs=125.4
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHH
Q 043142 175 NVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSAC 251 (512)
Q Consensus 175 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~ 251 (512)
+...+..+...|.+.|++++|...|+...+ .+...|..+...|.+.|++++|+..+++..+..+.+...+..+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345566677777788888888888877542 34567777888888888888888888888776666777788888888
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 043142 252 SRGGLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAEL 330 (512)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~ 330 (512)
...|++++|...|+...+. .|+ ...+...+....+......... .......++......+ ..+ ..|+.++|.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHH
Confidence 8888888888888877643 331 1111112222211111111111 1222223333333333 333 3688999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhc-cChhHHHHHHHHHHhC
Q 043142 331 ALEKLIELEPHDAGNYVILSNIYARA-ANWEGVAKLRKLMIDR 372 (512)
Q Consensus 331 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 372 (512)
.++++++.+|.+......+...+.+. +++++|.++|....+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999998776666776667666 7788999999887654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.74 E-value=7e-06 Score=81.85 Aligned_cols=348 Identities=11% Similarity=0.001 Sum_probs=215.3
Q ss_pred hHHHHHHHHHHccCChHHHHHHHccCCC--CCchHHHHHHHHHHhcCC-chHHHHHHHHHHHC-CCCC-CcchHHHHHHH
Q 043142 8 VLATKLVHLYSACDCLHNAHQLFDRIPQ--RNLFLWNVLIRAYAWNGP-YEVAIELYYRLLEI-GLVP-DNFTFPFALKA 82 (512)
Q Consensus 8 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~p-~~~t~~~ll~~ 82 (512)
.+|...+..|-. |+++.|..+|++... |++..|...+....+.+. .+....+|+..+.. |..| +...|...+..
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 466777777765 889999999998654 799999999987777663 45677788887654 5444 34456666655
Q ss_pred Hh----ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-------------CCChHHHHHHHHhhhhCC--CChhH
Q 043142 83 CS----ALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK-------------CSCVVNARQVFDKILERD--PSEAT 143 (512)
Q Consensus 83 ~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~~--pd~~t 143 (512)
+. ..++++.+..+|+..+......-..+|......-.. .+.+..|..+++.+...- .+...
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~ 174 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKN 174 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHH
Confidence 43 245688899999999874221112233322221111 122334444444443211 12224
Q ss_pred HHHHHHHHhcc--CC-----hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC-chHHHHHH
Q 043142 144 LVTVISASADI--AA-----LPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE-KR-VVSWNAMI 214 (512)
Q Consensus 144 ~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~-~~~~~~li 214 (512)
|...+.--... +- .+.+..+|+.++... +.+..+|...+..+.+.|+.+.|..+|++... |. ...|.
T Consensus 175 W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~--- 250 (493)
T 2uy1_A 175 AARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL--- 250 (493)
T ss_dssp HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH---
T ss_pred HHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH---
Confidence 44444332221 11 234677888888754 55678888888888999999999999987543 22 22232
Q ss_pred HHHHHcCChHHHHHHHHHhHHCC-----------C--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHH
Q 043142 215 TGYAMHGHSTKALDLFEKMKDEV-----------Q--PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYT 281 (512)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~m~~~~-----------~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 281 (512)
.|+...+.++. ++.+.+.- . .....|...+....+.+.++.|..+|+.. +..+ ++...|.
T Consensus 251 -~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i 323 (493)
T 2uy1_A 251 -YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFI 323 (493)
T ss_dssp -HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHH
T ss_pred -HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHH
Confidence 23332222222 22222110 1 12245666667666778899999999988 3322 2444554
Q ss_pred HHHHHHhccC-ChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 043142 282 CMVDLLGHSG-RLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAAN 358 (512)
Q Consensus 282 ~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 358 (512)
..+.+-.+.+ +.+.|..+|+.. ..-| +...|...+.-....|+.+.|..+|+++. .....|...+..-...|+
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 4333333334 699999999876 1123 34466777777788999999999999982 345677788887788899
Q ss_pred hhHHHHHHHHHHh
Q 043142 359 WEGVAKLRKLMID 371 (512)
Q Consensus 359 ~~~a~~~~~~m~~ 371 (512)
.+.+.++++++.+
T Consensus 400 ~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 400 MELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.5e-06 Score=76.11 Aligned_cols=216 Identities=8% Similarity=0.030 Sum_probs=137.7
Q ss_pred HhcCCc-hHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccC--ChHHHHHHHHHHHHhCCCCChhHHHHHHHHH----Hh
Q 043142 49 AWNGPY-EVAIELYYRLLEIGLVPDNF-TFPFALKACSALS--AIEEGRRIHEDVIRNKWETDVFVGAALIDMY----AK 120 (512)
Q Consensus 49 ~~~g~~-~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~----~~ 120 (512)
.+.|.+ ++|+++++.++.. .|+.. .|+.--..+...+ +++++++.+..++... +-+..+|+.--..+ .+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHh
Confidence 344444 5788888888774 45544 4666666677777 8888888888888775 44566666555555 45
Q ss_pred C---CChHHHHHHHHhhhhCCC-ChhHHHHHHHHHhccCChH--HHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC---
Q 043142 121 C---SCVVNARQVFDKILERDP-SEATLVTVISASADIAALP--QGRELHGFSWRHRFELNVKVKTALVDMYAKCGL--- 191 (512)
Q Consensus 121 ~---g~~~~A~~~~~~m~~~~p-d~~t~~~ll~~~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~--- 191 (512)
. +++++++.+++++.+.+| +..+|+.-.-.....+.++ ++.+.++.+++.. +.|...|+--...+.+.|.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccch
Confidence 5 678888888888888777 4456666655666666666 7777777777664 3455566655555555554
Q ss_pred ---HHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHH-HHHHHHHhHHCC---CCCHHHHHHHHHHHhcCCCHHHHH
Q 043142 192 ---VKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTK-ALDLFEKMKDEV---QPDHITFVGVLSACSRGGLFDEGR 261 (512)
Q Consensus 192 ---~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~---~p~~~t~~~ll~a~~~~g~~~~a~ 261 (512)
++++.+.++.+.. .|...|+-+-..+.+.|+..+ +.++..+....+ +.+...+..+..++.+.|+.++|.
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 6666666665442 345666666666666665433 344555544332 345566666666666666667777
Q ss_pred HHHHHHH
Q 043142 262 MFFESMV 268 (512)
Q Consensus 262 ~~~~~~~ 268 (512)
++++.+.
T Consensus 279 ~~~~~l~ 285 (306)
T 3dra_A 279 TVYDLLK 285 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666664
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-07 Score=75.03 Aligned_cols=106 Identities=13% Similarity=0.056 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 043142 243 TFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSC 319 (512)
Q Consensus 243 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 319 (512)
.+......+.+.|++++|+..|++.++. .| +...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3445556666666666666666666533 34 4556666666666666666666666655 2333 344677777777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 043142 320 KLHGHVKLAELALEKLIELEPHDAGNYVILSN 351 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 351 (512)
...|++++|.+.|+++++++|.++.++..|..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 77777777777777777777777766655543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.71 E-value=9e-07 Score=82.11 Aligned_cols=163 Identities=10% Similarity=-0.008 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC--CCC--hh
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDH------ITFVGVLSACSRGGLFDEGRMFFESMVRDYHI--DPS--VQ 278 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~ 278 (512)
.+...+..+...|++++|++.+.+..+...... ..+..+...+...|++++|...++...+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444556677788888888888877766544211 22334555667788888888888887643111 111 34
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC----CCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CC
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQM----RVKPD-----PGVWGALLNSCKLHGHVKLAELALEKLIELEPH------DA 343 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------~~ 343 (512)
+++.+...|...|++++|+..+++. ...|+ ..++..+...|...|++++|...++++++..+. ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888888899999888888765 11222 247888888999999999999999999876421 14
Q ss_pred chHHHHHHHHHhccChhHH-HHHHHHHHh
Q 043142 344 GNYVILSNIYARAANWEGV-AKLRKLMID 371 (512)
Q Consensus 344 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 371 (512)
.+|..++..|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5788899999999999999 777776543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.7e-07 Score=77.29 Aligned_cols=128 Identities=9% Similarity=0.020 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CcchHHHHHHHHhcc
Q 043142 8 VLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVP-DNFTFPFALKACSAL 86 (512)
Q Consensus 8 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~ 86 (512)
.+.+.|.+++...+.+.+|++ +.+.+...|..+...+.+.|++++|+..|++..... | +...|..+..++...
T Consensus 10 ~~~~~l~~~~~~~~~l~~al~----l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~ 83 (151)
T 3gyz_A 10 SISTAVIDAINSGATLKDINA----IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIK 83 (151)
T ss_dssp HHHHHHHHHHHTSCCTGGGCC----SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHhC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHH
Confidence 455667777766666555432 122356678888888888888888888888887753 4 455677788888888
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh
Q 043142 87 SAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA 142 (512)
Q Consensus 87 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~ 142 (512)
|++++|...|++.++.. |.++..|..+..+|.+.|++++|...|++..+..|+..
T Consensus 84 g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 84 EQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp TCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred ccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 88888888888888876 45677788888888888888888888888888777653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=7.3e-08 Score=79.42 Aligned_cols=102 Identities=10% Similarity=0.015 Sum_probs=84.1
Q ss_pred CCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 043142 272 HIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVI 348 (512)
Q Consensus 272 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 348 (512)
.+.| +...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..|+++++++|.++.++..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4456 5566777888888889999998888876 3344 56688888888999999999999999999999999999999
Q ss_pred HHHHHHhccChhHHHHHHHHHHhCC
Q 043142 349 LSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 349 l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
+..+|...|++++|.+.|++..+..
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999998877643
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-08 Score=96.11 Aligned_cols=95 Identities=12% Similarity=0.038 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 043142 277 VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYA 354 (512)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 354 (512)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..|+++++++|.++.++..+..++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467778888888888888888888777 3344 45688899999999999999999999999999999999999999999
Q ss_pred hccChhHH-HHHHHHHHh
Q 043142 355 RAANWEGV-AKLRKLMID 371 (512)
Q Consensus 355 ~~g~~~~a-~~~~~~m~~ 371 (512)
+.|++++| ...++.|.+
T Consensus 276 ~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 99999998 456666643
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.66 E-value=7.1e-07 Score=74.55 Aligned_cols=127 Identities=9% Similarity=0.035 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHH
Q 043142 242 ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNS 318 (512)
Q Consensus 242 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 318 (512)
..+..+...+...|++++|...|+...+. .| +...+..+...+...|++++|...+++. ...| +...|..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555666666777777777777777643 33 5666777777777777777777777665 2233 45578888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH--HHHhccChhHHHHHHHHHHh
Q 043142 319 CKLHGHVKLAELALEKLIELEPHDAGNYVILSN--IYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~ 371 (512)
+...|++++|...++++++..|.++..+..+.. .+...|++++|.+.++...+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999988877754444 47888999999999887653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.62 E-value=8.5e-07 Score=69.79 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCC-CCHhHHHHHHHH
Q 043142 241 HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK-PDPGVWGALLNS 318 (512)
Q Consensus 241 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~ 318 (512)
...+..+...+...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|..+++++ ... .+..+|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 3455666666777777777777777776431 224566667777777777777777777666 222 345577788888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc
Q 043142 319 CKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAA 357 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 357 (512)
+...|++++|...++++.+..|.++..+..+..++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888999999999888888888877777777665543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.7e-05 Score=72.82 Aligned_cols=215 Identities=13% Similarity=0.043 Sum_probs=123.6
Q ss_pred HHHHHHHHhhhhCCCChhH-HHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc-C-CHHHHHHHHH
Q 043142 125 VNARQVFDKILERDPSEAT-LVTVISASADIA-ALPQGRELHGFSWRHRFELNVKVKTALVDMYAKC-G-LVKVARNLFE 200 (512)
Q Consensus 125 ~~A~~~~~~m~~~~pd~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g-~~~~A~~~~~ 200 (512)
++|+++++++...+|+..| |+.--..+...+ .++++...++.+++.. +-+..+|+.-...+.+. + +++++.+.++
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 4455555555555554332 333333333344 3555555555555443 33445555544444444 5 6778888888
Q ss_pred hcCCCC---chHHHHHHHHHHHcCChH--------HHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCC-------HHHHHH
Q 043142 201 QLREKR---VVSWNAMITGYAMHGHST--------KALDLFEKMKDEVQPDHITFVGVLSACSRGGL-------FDEGRM 262 (512)
Q Consensus 201 ~m~~~~---~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~-------~~~a~~ 262 (512)
.+.+.+ -.+|+--...+.+.|.++ ++++.++++.+..+-|...|+--...+.+.+. ++++.+
T Consensus 150 k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe 229 (349)
T 3q7a_A 150 GSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELI 229 (349)
T ss_dssp HHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 877654 456666555555555555 88888898888877788888877777777775 678888
Q ss_pred HHHHHHHhcCCCC-ChhHHHHHHHHHhccCCh--------------------HHHHHHHHhC-CC-------CCCHhHHH
Q 043142 263 FFESMVRDYHIDP-SVQHYTCMVDLLGHSGRL--------------------DEACDLIMQM-RV-------KPDPGVWG 313 (512)
Q Consensus 263 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m-~~-------~p~~~~~~ 313 (512)
++..++.. .| |...|+-+-..+.+.|+. .+..++..++ .. .++...+.
T Consensus 230 ~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 306 (349)
T 3q7a_A 230 YILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE 306 (349)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence 88877744 56 677777766666666553 2222333222 11 13444555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH-hcCCCCC
Q 043142 314 ALLNSCKLHGHVKLAELALEKLI-ELEPHDA 343 (512)
Q Consensus 314 ~ll~~~~~~g~~~~A~~~~~~~~-~~~p~~~ 343 (512)
.|...|...|+.++|.++++.+. +.+|-..
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~ 337 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSSEYDQMRA 337 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhhChHHH
Confidence 55566666666666666666654 3445433
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-06 Score=70.01 Aligned_cols=103 Identities=13% Similarity=0.073 Sum_probs=78.2
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDM 117 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 117 (512)
...|......|.+.|++++|++.|++.++.. +.+...|..+..++...|++++|.+.++..++.. +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3456677778888888888888888877643 1245567777778888888888888888888775 4567778888888
Q ss_pred HHhCCChHHHHHHHHhhhhCCCChh
Q 043142 118 YAKCSCVVNARQVFDKILERDPSEA 142 (512)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~~pd~~ 142 (512)
|...|++++|++.|++..+.+|+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCH
Confidence 8888888888888888888777544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.5e-07 Score=70.85 Aligned_cols=116 Identities=9% Similarity=0.026 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALL 316 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 316 (512)
+...+..+...+...|++++|...|+...+ ..| +...+..+...|...|++++|+..+++. ...| +...|..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 344556666666666777777777666652 234 5566666666777777777777776665 2223 455777788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAAN 358 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 358 (512)
..+...|++++|.+.++++++.+|.+...+..+..++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888889999999998888888888888888877776653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-06 Score=69.80 Aligned_cols=117 Identities=11% Similarity=0.064 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALL 316 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 316 (512)
+...+..+...+...|++++|...++...+. .| +...+..+...+...|++++|...+++. ...| +...|..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 4455666677777777888888777777644 33 5667777777778888888888877766 2233 456788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccCh
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANW 359 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 359 (512)
..+...|++++|...++++++..|.++..+..+..++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8899999999999999999999998888888888888887765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.9e-07 Score=76.88 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=80.8
Q ss_pred HHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC
Q 043142 230 FEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP 307 (512)
Q Consensus 230 ~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 307 (512)
|++.....+.+...+..+...+...|++++|...|+..++. .| +...|..+..+|.+.|++++|+..|++. ...|
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 33333333334455666677777778888888888777643 45 6667777777788888888888887776 3334
Q ss_pred -CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 043142 308 -DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNY 346 (512)
Q Consensus 308 -~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 346 (512)
+...|..+..++...|++++|...|+++++..|.++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 345777888888889999999999999998888776543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.55 E-value=3.4e-07 Score=84.41 Aligned_cols=47 Identities=4% Similarity=-0.140 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc-CChHHHHHHHHhC
Q 043142 254 GGLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHS-GRLDEACDLIMQM 303 (512)
Q Consensus 254 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~-g~~~~A~~~~~~m 303 (512)
.|+.++|.+.++... ...|+ ......+...+.+. +.+++|.++|.+.
T Consensus 148 ~~~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 148 AAERERELEECQRNH---EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHHHHHHTTTSGGG---TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhh---ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355566665555554 23443 22223333334443 4566666666665
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.55 E-value=2.5e-05 Score=72.28 Aligned_cols=155 Identities=11% Similarity=0.019 Sum_probs=83.2
Q ss_pred HHHHHHhCCChHHHHHHHHhhhhCCCChh-------HHHHHHHHHhccCChHHHHHHHHHHHHcCCC-Cc----hHHHHH
Q 043142 114 LIDMYAKCSCVVNARQVFDKILERDPSEA-------TLVTVISASADIAALPQGRELHGFSWRHRFE-LN----VKVKTA 181 (512)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~~pd~~-------t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~ 181 (512)
.+..+.+.|++++|.+.+++..+..+... .+..+...+...+++++|...+..+++.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888776543221 1122444445556666666666666653221 11 224566
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC------CC----chHHHHHHHHHHHcCChHHHHHHHHHhHHCC----C-C-CHHHHH
Q 043142 182 LVDMYAKCGLVKVARNLFEQLRE------KR----VVSWNAMITGYAMHGHSTKALDLFEKMKDEV----Q-P-DHITFV 245 (512)
Q Consensus 182 li~~y~~~g~~~~A~~~~~~m~~------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~-p-~~~t~~ 245 (512)
+...|...|++++|...|+++.+ .+ ..+|..+...|...|++++|+..+++..+.. . + -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66666666666666666655431 11 1345555555556666666665555543221 1 1 134455
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHH
Q 043142 246 GVLSACSRGGL-FDEGRMFFESMV 268 (512)
Q Consensus 246 ~ll~a~~~~g~-~~~a~~~~~~~~ 268 (512)
.+..++...|+ +++|...+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 55555555552 355555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.55 E-value=7.7e-07 Score=80.51 Aligned_cols=209 Identities=10% Similarity=-0.054 Sum_probs=101.0
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHH-------HHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCCh
Q 043142 85 ALSAIEEGRRIHEDVIRNKWETDVFVGAAL-------IDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAAL 157 (512)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~ 157 (512)
..++...|.+.|.++.+.. +.....|+.+ ...+.+.++..+++..+.+-.+..|+......-| .|-+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~-----~g~y 91 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI-----GGLY 91 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC-----CTTT
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc-----CCcc
Confidence 4577777777777777765 4456666666 3445555555555555555544433221100000 0000
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--chHHHHHHHHHHHcCChHHHHHHHHHhHH
Q 043142 158 PQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR--VVSWNAMITGYAMHGHSTKALDLFEKMKD 235 (512)
Q Consensus 158 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 235 (512)
.. ++.-+..-..+.-.+..++...|++++|.++|+.+...+ ......+...+.+.+++++|+..|+....
T Consensus 92 ~~--------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~ 163 (282)
T 4f3v_A 92 GD--------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK 163 (282)
T ss_dssp CC--------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG
T ss_pred cc--------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence 00 000000012233344555556666666666666654322 12333444455666666666666654332
Q ss_pred CCCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC
Q 043142 236 EVQP--DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS--VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD 308 (512)
Q Consensus 236 ~~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 308 (512)
...| ....+..+..++...|++++|+..|++.. .....|. .........++.+.|+.++|...|+++ ...|+
T Consensus 164 ~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~-~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 164 WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAN-DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh-cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 2111 12244555666666666666666666664 2111142 224444555566666666666666665 23444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.9e-07 Score=76.79 Aligned_cols=150 Identities=13% Similarity=0.031 Sum_probs=69.3
Q ss_pred hcCCHHHHHH---HHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHC----CC--CCHHHHHHHHHHHhcCCCHH
Q 043142 188 KCGLVKVARN---LFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE----VQ--PDHITFVGVLSACSRGGLFD 258 (512)
Q Consensus 188 ~~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--p~~~t~~~ll~a~~~~g~~~ 258 (512)
..|++++|.+ .+..-+......+..+...|...|++++|+..+++.... +. ....++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 333222222345555555566666666666666555431 11 22344555555566666666
Q ss_pred HHHHHHHHHHHhcCCCC-----ChhHHHHHHHHHhccCChHHHHHHHHhC----CCCCCH----hHHHHHHHHHHHcCCH
Q 043142 259 EGRMFFESMVRDYHIDP-----SVQHYTCMVDLLGHSGRLDEACDLIMQM----RVKPDP----GVWGALLNSCKLHGHV 325 (512)
Q Consensus 259 ~a~~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~----~~~~~ll~~~~~~g~~ 325 (512)
+|...+++..+...-.+ ....+..+...+...|++++|...+++. +..++. .++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 66666655543211111 1223444455555555555555555443 001111 1234444455555555
Q ss_pred HHHHHHHHHHHh
Q 043142 326 KLAELALEKLIE 337 (512)
Q Consensus 326 ~~A~~~~~~~~~ 337 (512)
++|...++++++
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-07 Score=82.21 Aligned_cols=169 Identities=9% Similarity=0.035 Sum_probs=96.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCHHHHHHHHHHHhcCCCH
Q 043142 183 VDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLF 257 (512)
Q Consensus 183 i~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~~g~~ 257 (512)
+......|++++|.+.++.-.+. ....|..+...+...|++++|+..|++.....+ |+.... . .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~---------~ 79 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--I---------L 79 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--H---------H
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--h---------H
Confidence 33444455666665555433221 234555666666667777777777776665433 211000 0 0
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043142 258 DEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKL 335 (512)
Q Consensus 258 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 335 (512)
..- -..+ ....+..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++
T Consensus 80 ~~~---~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 80 LDK---KKNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHH---HHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHH---HHHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 000 0000 1246666777777888888888877766 2333 4568888889999999999999999999
Q ss_pred HhcCCCCCchHHHHHHHHHhccChhHHH-HHHHHHHhCC
Q 043142 336 IELEPHDAGNYVILSNIYARAANWEGVA-KLRKLMIDRG 373 (512)
Q Consensus 336 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~g 373 (512)
++.+|.++.++..+..++...++.+++. ..++.|...+
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999998888887776 5566655443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.53 E-value=7.9e-07 Score=72.49 Aligned_cols=100 Identities=8% Similarity=-0.011 Sum_probs=79.8
Q ss_pred CCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 043142 273 IDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVIL 349 (512)
Q Consensus 273 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 349 (512)
+.| +...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...|+++++.+|.++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 445 4455666777788888888888888776 3344 455788888888888999999999999998888888888888
Q ss_pred HHHHHhccChhHHHHHHHHHHhC
Q 043142 350 SNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
..+|...|++++|.+.+++..+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88999999999999888887654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.53 E-value=3.7e-07 Score=74.50 Aligned_cols=107 Identities=10% Similarity=0.032 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALL 316 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 316 (512)
+...+..+...+...|++++|...|+..++. .| +...|..+..+|.+.|++++|+..|++. ...| +...|..+.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3445555666777777788887777777643 44 5667777777777888888888777766 2334 344677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPHDAGNYVIL 349 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 349 (512)
.++...|++++|...|+++++..|.++......
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 888888888888888888888888776554443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-06 Score=74.06 Aligned_cols=126 Identities=6% Similarity=0.060 Sum_probs=95.5
Q ss_pred HHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHH-HhccCCh--
Q 043142 218 AMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDL-LGHSGRL-- 293 (512)
Q Consensus 218 ~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~~-- 293 (512)
...|++++|+..+++.....+.+...+..+...+...|++++|...|+...+. .| +...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcch
Confidence 45677888888888887776667778888888888889999999888888754 34 56677777777 7788887
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 043142 294 DEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNY 346 (512)
Q Consensus 294 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 346 (512)
++|...+++. ...| +...|..+...+...|++++|...++++++..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888888876 3344 355788888888999999999999999999988876543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-06 Score=67.50 Aligned_cols=99 Identities=10% Similarity=0.011 Sum_probs=80.0
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCchHHHHHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPH--DAGNYVILSN 351 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 351 (512)
+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|. ++..+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4556677777788888888888888776 2233 4567888888888899999999999999998888 8888888999
Q ss_pred HHHhc-cChhHHHHHHHHHHhCCC
Q 043142 352 IYARA-ANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 352 ~~~~~-g~~~~a~~~~~~m~~~g~ 374 (512)
+|... |++++|.+.++...+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999988876654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.1e-06 Score=73.28 Aligned_cols=153 Identities=13% Similarity=0.008 Sum_probs=116.0
Q ss_pred HHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCC-ChhHHHHHHHHHhccCC
Q 043142 218 AMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDY---HIDP-SVQHYTCMVDLLGHSGR 292 (512)
Q Consensus 218 ~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~ 292 (512)
...|++++|.+.++.+.. .+ ....++..+...+...|++++|...+++..+.. +..| ....+..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467999999996655543 33 566788889999999999999999999887522 1222 45678888999999999
Q ss_pred hHHHHHHHHhC-C---CCC-C----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC----CchHHHHHHHHHhcc
Q 043142 293 LDEACDLIMQM-R---VKP-D----PGVWGALLNSCKLHGHVKLAELALEKLIELE--PHD----AGNYVILSNIYARAA 357 (512)
Q Consensus 293 ~~~A~~~~~~m-~---~~p-~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g 357 (512)
+++|.+.+++. . ..+ + ...+..+...+...|++++|...+++.++.. ..+ ..++..+..+|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999998876 1 122 2 2367788888999999999999999998753 222 224578899999999
Q ss_pred ChhHHHHHHHHHHh
Q 043142 358 NWEGVAKLRKLMID 371 (512)
Q Consensus 358 ~~~~a~~~~~~m~~ 371 (512)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.4e-06 Score=79.13 Aligned_cols=158 Identities=11% Similarity=-0.041 Sum_probs=92.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---C------chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC----CC--HHHHH
Q 043142 181 ALVDMYAKCGLVKVARNLFEQLREK---R------VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ----PD--HITFV 245 (512)
Q Consensus 181 ~li~~y~~~g~~~~A~~~~~~m~~~---~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----p~--~~t~~ 245 (512)
..+..+...|++++|.+.++...+. . ...+..+...+...|++++|+..|++...... +. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 3455555666666666665543211 1 01223344455666677777777766654322 11 33566
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHhC-------CCCCC-HhHH
Q 043142 246 GVLSACSRGGLFDEGRMFFESMVRDYHIDPS-----VQHYTCMVDLLGHSGRLDEACDLIMQM-------RVKPD-PGVW 312 (512)
Q Consensus 246 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~ 312 (512)
.+...|...|++++|..+|++..+.....|+ ..++..+...|.+.|++++|+..+++. +.... ..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 6677777777777777777766522111222 146666777777777777777777655 11111 3467
Q ss_pred HHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 043142 313 GALLNSCKLHGHVKLA-ELALEKLIEL 338 (512)
Q Consensus 313 ~~ll~~~~~~g~~~~A-~~~~~~~~~~ 338 (512)
..+...+...|++++| ...+++++..
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7777788888888888 6667776653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-06 Score=77.94 Aligned_cols=136 Identities=13% Similarity=-0.029 Sum_probs=101.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHH
Q 043142 210 WNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS--VQHYTCMVDLL 287 (512)
Q Consensus 210 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~ 287 (512)
+-.....+...|++++|.++|+.+...++ +......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p-~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGS-EHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 44566778889999999999998876555 3325555666888999999999999866421 1 121 23677788889
Q ss_pred hccCChHHHHHHHHhCC---CCCC--HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 043142 288 GHSGRLDEACDLIMQMR---VKPD--PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVIL 349 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m~---~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 349 (512)
.+.|++++|+..|++.. ..|. ...+.....++...|+.++|...|+++...+|. +..+..|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 99999999999999872 2143 236677778889999999999999999999987 5554444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.8e-07 Score=76.30 Aligned_cols=120 Identities=10% Similarity=0.147 Sum_probs=100.7
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHH-HHHcCCH--
Q 043142 252 SRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNS-CKLHGHV-- 325 (512)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~-- 325 (512)
...|++++|...++...+. .| +...+..+...|...|++++|...+++. ...| +...|..+... +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 4568889999999988755 45 6788999999999999999999999887 3334 55688888888 7789998
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 326 KLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 326 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
++|...++++++.+|.++..+..++.+|...|++++|...+++..+...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999887653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.6e-05 Score=72.62 Aligned_cols=226 Identities=11% Similarity=0.037 Sum_probs=133.8
Q ss_pred hCCChH-HHHHHHHhhhhCCCChhH-HHHHHHHHhccCC----------hHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 043142 120 KCSCVV-NARQVFDKILERDPSEAT-LVTVISASADIAA----------LPQGRELHGFSWRHRFELNVKVKTALVDMYA 187 (512)
Q Consensus 120 ~~g~~~-~A~~~~~~m~~~~pd~~t-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 187 (512)
+.|.++ +|+++++.+...+|+..| |+.=-..+...+. ++++..+++.++... +-+..+|+--.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 445543 677777777777776554 3322222211111 456666666666653 445666666666666
Q ss_pred hcC--CHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCC-hHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcC-------
Q 043142 188 KCG--LVKVARNLFEQLRE---KRVVSWNAMITGYAMHGH-STKALDLFEKMKDEVQPDHITFVGVLSACSRG------- 254 (512)
Q Consensus 188 ~~g--~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~------- 254 (512)
+.| .++++..+++.+.+ +|-.+|+--...+...|. ++++++.++++.+..+-|...|+-....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC---
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc
Confidence 666 47788888877764 345677776666677777 47888888888877776666666554444433
Q ss_pred -------CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhcc-----------CChHHHHHHHHhC-CCCCCHhHHHH
Q 043142 255 -------GLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHS-----------GRLDEACDLIMQM-RVKPDPGVWGA 314 (512)
Q Consensus 255 -------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~~~~ 314 (512)
+.++++.+++...+.. .| |...|+-+-..+.+. +.++++++.++++ ...||. .|..
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l 275 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCL 275 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred cccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHH
Confidence 3467777777777643 55 566666554444444 3456666666665 345554 3432
Q ss_pred HHHHH-----HHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 043142 315 LLNSC-----KLHGHVKLAELALEKLIELEPHDAGNYVILS 350 (512)
Q Consensus 315 ll~~~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 350 (512)
+-.+. ...+..++....+.++.+++|....-|..+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 22211 1245566777777777777776555554443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.46 E-value=3.2e-06 Score=66.37 Aligned_cols=102 Identities=23% Similarity=0.213 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDM 117 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 117 (512)
...|..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|..+++.+.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4566777777777777777777777776542 1234556666677777777777777777777664 4456667777777
Q ss_pred HHhCCChHHHHHHHHhhhhCCCCh
Q 043142 118 YAKCSCVVNARQVFDKILERDPSE 141 (512)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~~pd~ 141 (512)
|.+.|++++|...|+++.+.+|+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCc
Confidence 777777777777777776666543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.45 E-value=3.1e-06 Score=70.51 Aligned_cols=126 Identities=13% Similarity=0.014 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHH
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLL 287 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 287 (512)
.|..+...+...|++++|...|++.....+.+..++..+..++...|++++|...++...+. .| +...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHH
Confidence 34444555555555555555555555544444555555555566666666666666655533 23 445555556666
Q ss_pred hccCChHHHHHHHHhC-CCCC-CHhHHH--HHHHHHHHcCCHHHHHHHHHHHHh
Q 043142 288 GHSGRLDEACDLIMQM-RVKP-DPGVWG--ALLNSCKLHGHVKLAELALEKLIE 337 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~--~ll~~~~~~g~~~~A~~~~~~~~~ 337 (512)
.+.|++++|...+++. ...| +...+. .+...+...|++++|...+.+..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 6666666666666554 2222 222332 222235556666666666666543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=5e-05 Score=70.99 Aligned_cols=177 Identities=12% Similarity=0.045 Sum_probs=111.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 043142 41 WNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNF-TFPFALKACSALS-AIEEGRRIHEDVIRNKWETDVFVGAALIDMY 118 (512)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 118 (512)
++.+-....+.+..++|+++++.++.. .|+.. .|+.--..+...+ .++++.+.++.+++.. +-+..+|+.-...+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344334444556667899999999884 45544 4666666666777 5999999999998876 55777888877777
Q ss_pred HhC-C-ChHHHHHHHHhhhhCCC-ChhHHHHHHHHHhccCChH--------HHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 043142 119 AKC-S-CVVNARQVFDKILERDP-SEATLVTVISASADIAALP--------QGRELHGFSWRHRFELNVKVKTALVDMYA 187 (512)
Q Consensus 119 ~~~-g-~~~~A~~~~~~m~~~~p-d~~t~~~ll~~~~~~~~~~--------~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 187 (512)
.+. + ++++++++++++.+.+| |..+|+.-.-...+.+.++ ++.+.+..+++.. +.|...|+-....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 776 6 88999999999999887 4455655444444444444 5666666666654 345556665555555
Q ss_pred hcCC-------HHHHHHHHHhcCC---CCchHHHHHHHHHHHcC
Q 043142 188 KCGL-------VKVARNLFEQLRE---KRVVSWNAMITGYAMHG 221 (512)
Q Consensus 188 ~~g~-------~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g 221 (512)
+.+. ++++.+.+++... .|...|+-+-..+.+.|
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 5554 3445554444331 23344544444444433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.7e-06 Score=66.39 Aligned_cols=103 Identities=15% Similarity=0.063 Sum_probs=80.5
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
+...|..+...+.+.|++++|...|++..... +.+...+..+...+...|++++|.+.++..++.. +.+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 55678888888888899999999888887643 1245567777778888888888888888888775 456777888888
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCCh
Q 043142 117 MYAKCSCVVNARQVFDKILERDPSE 141 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd~ 141 (512)
.|.+.|++++|.+.|++..+.+|+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 8888888888888888887776643
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=1e-06 Score=69.55 Aligned_cols=95 Identities=16% Similarity=0.048 Sum_probs=80.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARA 356 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 356 (512)
.+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|.++..+..+..+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677788899999999999887 3445 5568888889999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHhCC
Q 043142 357 ANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 357 g~~~~a~~~~~~m~~~g 373 (512)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887643
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=5e-06 Score=65.87 Aligned_cols=117 Identities=16% Similarity=0.058 Sum_probs=73.6
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
+...|..+...+...|++++|...|++..... +.+...+..+...+...|++++|.+.+...++.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34556666777777777777777777776542 1234456666666777777777777777776664 345666677777
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHHhccC
Q 043142 117 MYAKCSCVVNARQVFDKILERDPS-EATLVTVISASADIA 155 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~ 155 (512)
.|.+.|++++|.+.|++..+.+|+ ...+..+..++...|
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 777777777777777777666553 233334444443333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.3e-06 Score=66.97 Aligned_cols=95 Identities=11% Similarity=0.017 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 043142 278 QHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYAR 355 (512)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 355 (512)
..+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..+..+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555556666677777777776665 2233 345777777777777777778888887777777777777777777777
Q ss_pred ccChhHHHHHHHHHHhC
Q 043142 356 AANWEGVAKLRKLMIDR 372 (512)
Q Consensus 356 ~g~~~~a~~~~~~m~~~ 372 (512)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 88888887777776654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=7.3e-06 Score=63.53 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 043142 243 TFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSC 319 (512)
Q Consensus 243 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 319 (512)
.+..+...+...|++++|...|+...+. .| +...+..+...+.+.|++++|...+++. ...| +...|..+...+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4445555556666666666666666533 23 4555555666666666666666666554 2223 344666666677
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 043142 320 KLHGHVKLAELALEKLIELEPHDAGNYVILSN 351 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 351 (512)
...|++++|...++++.+.+|.++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 77777777777777777777766655554443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.37 E-value=3.6e-06 Score=79.71 Aligned_cols=100 Identities=13% Similarity=0.015 Sum_probs=56.3
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc----------------chHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN----------------FTFPFALKACSALSAIEEGRRIHEDVI 100 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~~~~~~~~~~~a~~~~~~~~ 100 (512)
+...|..+...|.+.|++++|+..|++..... |+. ..|..+..++...|++++|...++.++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45567777777788888888888888777643 332 344444444555555555555555554
Q ss_pred HhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCC
Q 043142 101 RNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDP 139 (512)
Q Consensus 101 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p 139 (512)
+.. +.+...+..+..+|.+.|++++|+..|++..+.+|
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 261 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 261 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 443 23444444455555555555555555555544444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.8e-06 Score=69.60 Aligned_cols=107 Identities=16% Similarity=0.083 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALL 316 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll 316 (512)
+...+..+...+...|++++|...|+..++. .| +...|..+..+|.+.|++++|+..+++. ...|+ ...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4455666777777888888888888887644 45 6677778888888888888888888776 33443 56888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPHDAGNYVIL 349 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 349 (512)
.++...|++++|...|+++++++|.++..+...
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 999999999999999999999999988765443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.9e-06 Score=66.90 Aligned_cols=97 Identities=10% Similarity=-0.024 Sum_probs=75.5
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIY 353 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 353 (512)
+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++.+|.++..+..+..+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 5666777777777777777777777765 2333 3557778888888888888888888888888888888888888888
Q ss_pred HhccChhHHHHHHHHHHhC
Q 043142 354 ARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 354 ~~~g~~~~a~~~~~~m~~~ 372 (512)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 8888888888888887654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=8.7e-07 Score=76.86 Aligned_cols=131 Identities=9% Similarity=-0.045 Sum_probs=74.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCC-CC------------
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLV-PD------------ 72 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~------------ 72 (512)
+.+..+......|+++.|.+.|+.-.. .....|..+...+.+.|++++|+..|++....... |+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN 85 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 344555566667888888888875433 24567888888999999999999999999874211 11
Q ss_pred --cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC
Q 043142 73 --NFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 73 --~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd 140 (512)
...+..+..++...|++++|...+...++.. +.+...+..+..+|...|++++|.+.|++..+.+|+
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 0345555555666666666666666666553 344555666666666666666666666666555553
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.35 E-value=3.6e-07 Score=90.55 Aligned_cols=127 Identities=10% Similarity=0.062 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC----------------hhHHHHHHHHHhccCChHHHHHHHHhC-C
Q 043142 242 ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS----------------VQHYTCMVDLLGHSGRLDEACDLIMQM-R 304 (512)
Q Consensus 242 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 304 (512)
..+..+...+.+.|++++|...|++.++. .|+ ...|..+..+|.+.|++++|+..+++. .
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW---LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34445555555566666666666655532 221 467888888999999999999998877 3
Q ss_pred CCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHH-HHHHHHh
Q 043142 305 VKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAK-LRKLMID 371 (512)
Q Consensus 305 ~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~ 371 (512)
..| +...|..+..++...|++++|+..|+++++++|.+..++..+..++.+.|+++++.+ .++.|..
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344 456899999999999999999999999999999999999999999999999998864 4555544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-05 Score=65.69 Aligned_cols=110 Identities=14% Similarity=0.038 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS----VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWG 313 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 313 (512)
+...+..+...+...|++++|...|+... ...|+ ...+..+...|.+.|++++|+..+++. ...| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 44555566666666677777777776665 23454 456666666677777777777766655 2233 345667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 043142 314 ALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNI 352 (512)
Q Consensus 314 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 352 (512)
.+...+...|++++|...++++++.+|.++..+..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 777777777888888888888887777776655555444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.4e-06 Score=71.48 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=88.8
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIY 353 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 353 (512)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..+..+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4667888899999999999999999887 3445 5668999999999999999999999999999999999999999999
Q ss_pred HhccChhHHHHHHHHHHhCC
Q 043142 354 ARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 354 ~~~g~~~~a~~~~~~m~~~g 373 (512)
...|++++|...+++..+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC
Confidence 99999999999999987754
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=8.4e-06 Score=64.58 Aligned_cols=98 Identities=12% Similarity=0.030 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMY 118 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 118 (512)
..|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...++..++.. +.+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 456667777777888888888888777643 1234567777777777788888888887777765 44566777777778
Q ss_pred HhCCChHHHHHHHHhhhhCC
Q 043142 119 AKCSCVVNARQVFDKILERD 138 (512)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~~ 138 (512)
...|++++|...|++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 88888888888887777666
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=5.8e-06 Score=64.13 Aligned_cols=97 Identities=12% Similarity=0.101 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 043142 277 VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYA 354 (512)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 354 (512)
...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456777888999999999999999987 3334 56788999999999999999999999999999999999999999999
Q ss_pred hccChhHHHHHHHHHHhCC
Q 043142 355 RAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 355 ~~g~~~~a~~~~~~m~~~g 373 (512)
..|++++|.+.+++..+.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999987654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.32 E-value=4.6e-06 Score=64.07 Aligned_cols=102 Identities=19% Similarity=0.037 Sum_probs=55.2
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--ChhHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWET--DVFVGAAL 114 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l 114 (512)
+...|..+...+.+.|++++|...|++..+... .+...+..+...+...|++++|.+.+++.++.. +. +..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 344455555555666666666666666554321 123345555555555566666666665555543 22 34555555
Q ss_pred HHHHHhC-CChHHHHHHHHhhhhCCCC
Q 043142 115 IDMYAKC-SCVVNARQVFDKILERDPS 140 (512)
Q Consensus 115 i~~~~~~-g~~~~A~~~~~~m~~~~pd 140 (512)
...|.+. |++++|.+.|.+....+|+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 5566666 6666666666665555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.31 E-value=6.2e-06 Score=82.03 Aligned_cols=116 Identities=12% Similarity=0.027 Sum_probs=67.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHH
Q 043142 183 VDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDE 259 (512)
Q Consensus 183 i~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~ 259 (512)
...|.+.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.+++..+..+.+..++..+..++...|++++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3445566677777777666542 2345666666666677777777777766666655556666666666666677777
Q ss_pred HHHHHHHHHHhcCCCC-ChhHHHHHHHH--HhccCChHHHHHHHH
Q 043142 260 GRMFFESMVRDYHIDP-SVQHYTCMVDL--LGHSGRLDEACDLIM 301 (512)
Q Consensus 260 a~~~~~~~~~~~~~~p-~~~~~~~li~~--~~~~g~~~~A~~~~~ 301 (512)
|...|++..+. .| +...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77766666543 33 23333334333 555666666666665
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=8.4e-06 Score=66.33 Aligned_cols=98 Identities=13% Similarity=-0.018 Sum_probs=89.4
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD----PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILS 350 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 350 (512)
+...+..+...+.+.|++++|...|++. ...|+ ...|..+...+...|++++|...++++++..|.++..+..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 5678888999999999999999999987 56777 568888999999999999999999999999999999999999
Q ss_pred HHHHhccChhHHHHHHHHHHhCC
Q 043142 351 NIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
.+|...|++++|...+++..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999987654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.7e-06 Score=67.74 Aligned_cols=89 Identities=7% Similarity=-0.020 Sum_probs=41.4
Q ss_pred HHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-------hHHHHHHH
Q 043142 282 CMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAG-------NYVILSNI 352 (512)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l~~~ 352 (512)
-+...+.+.|++++|++.|++. .+.|+ ...|..+..+|...|++++|++.++++++++|.+.. +|..+..+
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~ 92 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNA 92 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 3444444444444444444443 22222 234444555555555555555555555554443322 33344444
Q ss_pred HHhccChhHHHHHHHHHH
Q 043142 353 YARAANWEGVAKLRKLMI 370 (512)
Q Consensus 353 ~~~~g~~~~a~~~~~~m~ 370 (512)
|...|++++|.+.|++..
T Consensus 93 ~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 93 FQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 555555555555555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.4e-05 Score=78.38 Aligned_cols=188 Identities=9% Similarity=-0.034 Sum_probs=126.6
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCC--------------------chHHHHHHHHHHHcCChHHHHHHHHHhHHCC--CCCH
Q 043142 184 DMYAKCGLVKVARNLFEQLREKR--------------------VVSWNAMITGYAMHGHSTKALDLFEKMKDEV--QPDH 241 (512)
Q Consensus 184 ~~y~~~g~~~~A~~~~~~m~~~~--------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~p~~ 241 (512)
..+.+.|++++|.+.|..+.+.+ ..++..+...|...|++++|.+.+.++.... .++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34455666666666666543211 0246677888888888888888888875431 1222
Q ss_pred H----HHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-----C--CC
Q 043142 242 I----TFVGVLSACSRGGLFDEGRMFFESMVRDY---HIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-----R--VK 306 (512)
Q Consensus 242 ~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~--~~ 306 (512)
. +.+.+...+...|+.+++..++....... +..+ ...++..|...|...|++++|..++++. + -+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2 22333334456788888888887765421 2222 2457788889999999999999988776 1 12
Q ss_pred CC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC----CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 307 PD-PGVWGALLNSCKLHGHVKLAELALEKLIELE---PHD----AGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 307 p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
|. ..++..++..|...|++++|..++++++... +.+ ...+..+...+...|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 32 2378888889999999999999999988653 222 23566677788888999999888876653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=8.7e-06 Score=65.42 Aligned_cols=100 Identities=11% Similarity=-0.017 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHH
Q 043142 239 PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGAL 315 (512)
Q Consensus 239 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 315 (512)
.+...+..+...+...|++++|...|+..++. .| +...+..+...|...|++++|...+++. ...| +...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 45566667777777777777777777777643 34 4667777777777777777777777766 2333 35577888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 043142 316 LNSCKLHGHVKLAELALEKLIELEPH 341 (512)
Q Consensus 316 l~~~~~~g~~~~A~~~~~~~~~~~p~ 341 (512)
...+...|++++|...++++++..|.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888887765
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-05 Score=63.97 Aligned_cols=103 Identities=15% Similarity=0.017 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHhccCChHHHHHHHHHHHHhCC--CCC----hhHH
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD-NFTFPFALKACSALSAIEEGRRIHEDVIRNKW--ETD----VFVG 111 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~ 111 (512)
.+|..+...+.+.|++++|++.|++.++. .|+ ...|..+..++...|++++|.+.+...++... .++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 34566666777777777777777776663 233 34566666667777777777777776665431 111 1355
Q ss_pred HHHHHHHHhCCChHHHHHHHHhhhhCCCChhH
Q 043142 112 AALIDMYAKCSCVVNARQVFDKILERDPSEAT 143 (512)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t 143 (512)
..+...|...|++++|++.|++.....||..+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~ 118 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRDPEL 118 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHH
Confidence 56666777777777777777777666565443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.22 E-value=3.9e-06 Score=83.52 Aligned_cols=116 Identities=10% Similarity=0.083 Sum_probs=82.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCH
Q 043142 249 SACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHV 325 (512)
Q Consensus 249 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~ 325 (512)
..+.+.|++++|...|++.++. .| +...+..+..+|.+.|++++|++.+++. ...|+ ...|..+..++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3455667777777777777643 44 4667777777777777777777777766 33443 45777788888888888
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHH--HHhccChhHHHHHHH
Q 043142 326 KLAELALEKLIELEPHDAGNYVILSNI--YARAANWEGVAKLRK 367 (512)
Q Consensus 326 ~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 367 (512)
++|++.++++++.+|.++..+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888888888888887777777766 777788888888776
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00044 Score=67.56 Aligned_cols=159 Identities=9% Similarity=-0.085 Sum_probs=100.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhhhhCC---CCh----hHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCC-chHH
Q 043142 111 GAALIDMYAKCSCVVNARQVFDKILERD---PSE----ATLVTVISASADIAALPQGRELHGFSWRH----RFEL-NVKV 178 (512)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~~---pd~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~ 178 (512)
+..|...|.+.|++++|.+.+.++.... ++. ...+.+-..+...|+.+.+..++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3456666677777777776666654321 111 11222222334556677777776655432 2222 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC----CC-----chHHHHHHHHHHHcCChHHHHHHHHHhHHCC--CCC-----HH
Q 043142 179 KTALVDMYAKCGLVKVARNLFEQLRE----KR-----VVSWNAMITGYAMHGHSTKALDLFEKMKDEV--QPD-----HI 242 (512)
Q Consensus 179 ~~~li~~y~~~g~~~~A~~~~~~m~~----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~p~-----~~ 242 (512)
+..|...|...|++++|..+++.... .+ +..|..++..|...|++++|..++++..... .++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 77788888888998888888876531 11 3578888888888999999988888765431 121 23
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043142 243 TFVGVLSACSRGGLFDEGRMFFESMVR 269 (512)
Q Consensus 243 t~~~ll~a~~~~g~~~~a~~~~~~~~~ 269 (512)
.+..+...+...+++++|...|....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455666677788899988888777654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.16 E-value=9.7e-06 Score=64.32 Aligned_cols=61 Identities=16% Similarity=0.073 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIELEPHD---AGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
.+..+..++...|++++|...++++++..|++ +.++..++.+|...|++++|...++.+.+
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444555555555555555555555544 33445555555555555555555555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.16 E-value=1.2e-05 Score=63.72 Aligned_cols=107 Identities=14% Similarity=0.069 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCC--CCC----hhHHH
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKW--ETD----VFVGA 112 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~~ 112 (512)
..|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+...++... +++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456666677777777777777777776643 22344566666667777777777777777666531 111 55667
Q ss_pred HHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHH
Q 043142 113 ALIDMYAKCSCVVNARQVFDKILERDPSEATLVT 146 (512)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ 146 (512)
.+...|.+.|++++|.+.|++..+.+|+......
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 117 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHH
Confidence 7777777888888888888777776665444333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.2e-05 Score=63.22 Aligned_cols=98 Identities=10% Similarity=-0.163 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 043142 40 LWNVLIRAYAWNGPYEVAIELYYRLLEIGLVP-DNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMY 118 (512)
Q Consensus 40 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 118 (512)
.+..+...+.+.|++++|+..|++..+. .| +...+..+..++...|++++|...+++.++.. +.+...+..+...|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4555666777888888888888887764 33 44566667777778888888888888877775 44566777777888
Q ss_pred HhCCChHHHHHHHHhhhhCCCC
Q 043142 119 AKCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~~pd 140 (512)
.+.|++++|+..|++..+.+|+
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 8888888888888887776664
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.14 E-value=4.1e-05 Score=60.45 Aligned_cols=108 Identities=11% Similarity=0.004 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CC----CCC----HhHHH
Q 043142 243 TFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RV----KPD----PGVWG 313 (512)
Q Consensus 243 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----~p~----~~~~~ 313 (512)
.+..+...+...|++++|..+|+...+.. +.+...+..+...|.+.|++++|...+++. .. .++ ..+|.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34444555555555566655555554331 124445555555566666666666655554 11 112 44666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 043142 314 ALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIY 353 (512)
Q Consensus 314 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 353 (512)
.+...+...|++++|...++++++..| ++.....+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 777777778888888888888877776 444444444433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.14 E-value=4.1e-05 Score=60.56 Aligned_cols=100 Identities=15% Similarity=0.076 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc----chHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---hhHHHH
Q 043142 41 WNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN----FTFPFALKACSALSAIEEGRRIHEDVIRNKWETD---VFVGAA 113 (512)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~ 113 (512)
+..+...+.+.|++++|...|++..... |+. ..+..+..++...|++++|...++.+++.. +.+ ..++..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHH
Confidence 3345566777888888888888877643 333 256666677777888888888888877764 223 455667
Q ss_pred HHHHHHhCCChHHHHHHHHhhhhCCCChhH
Q 043142 114 LIDMYAKCSCVVNARQVFDKILERDPSEAT 143 (512)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~~pd~~t 143 (512)
+...|.+.|++++|...|+++.+..|+...
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 777788888888888888888777765443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.7e-05 Score=75.95 Aligned_cols=90 Identities=12% Similarity=0.035 Sum_probs=77.0
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIY 353 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 353 (512)
+...|..+..+|.+.|++++|++.+++. ...|+ ...|..+..++...|++++|+..++++++++|.+...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567888888999999999999999887 45554 558888999999999999999999999999999998999999998
Q ss_pred HhccChhHHHHH
Q 043142 354 ARAANWEGVAKL 365 (512)
Q Consensus 354 ~~~g~~~~a~~~ 365 (512)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 888888777543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.3e-05 Score=65.58 Aligned_cols=62 Identities=6% Similarity=-0.059 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIEL-------EPHDAGNY----VILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
.|..+..++...|++++|+..+++++++ +|++...| .....++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888888899999999999999999988 99988888 99999999999999999999988754
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.12 E-value=3.5e-06 Score=65.98 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=45.9
Q ss_pred cCChHHHHHHHHhC-CC---CCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHH
Q 043142 290 SGRLDEACDLIMQM-RV---KPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAK 364 (512)
Q Consensus 290 ~g~~~~A~~~~~~m-~~---~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 364 (512)
.|++++|+..|++. .. .|+ ...|..+...+...|++++|+..++++++.+|.++.++..+..+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 34555555555554 22 132 22555566666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 043142 365 LRKLMID 371 (512)
Q Consensus 365 ~~~~m~~ 371 (512)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00067 Score=63.08 Aligned_cols=217 Identities=12% Similarity=0.043 Sum_probs=151.8
Q ss_pred ccCCh-HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC----------HHHHHHHHHhcCC---CCchHHHHHHHHHH
Q 043142 153 DIAAL-PQGRELHGFSWRHRFELNVKVKTALVDMYAKCGL----------VKVARNLFEQLRE---KRVVSWNAMITGYA 218 (512)
Q Consensus 153 ~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~m~~---~~~~~~~~li~~~~ 218 (512)
+.|.+ ++|....+.++... |-+..+|+.--..+...+. ++++...++.+.. ++..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 34554 47888888888765 3344556544333333332 6788888888764 45678888877788
Q ss_pred HcCC--hHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhcc----
Q 043142 219 MHGH--STKALDLFEKMKDEVQPDHITFVGVLSACSRGGL-FDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHS---- 290 (512)
Q Consensus 219 ~~g~--~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~---- 290 (512)
..++ +++++++++++.+..+-|...|+--.-.+...|. ++++.+.+..+++. .| |...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhhcc
Confidence 8784 7999999999999888788888777777777887 58999999999865 45 677777666655554
Q ss_pred ----------CChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCCchHH
Q 043142 291 ----------GRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLH-----------GHVKLAELALEKLIELEPHDAGNYV 347 (512)
Q Consensus 291 ----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~ 347 (512)
+.++++++++.+. ...| |...|+-+-..+... +.++++++.++++++.+|++.-.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 4578888888776 3344 555776555544444 4578999999999999998743333
Q ss_pred HHHHH---HHhccChhHHHHHHHHHHhCC
Q 043142 348 ILSNI---YARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 348 ~l~~~---~~~~g~~~~a~~~~~~m~~~g 373 (512)
.++.. ....|..+++...+.++.+.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 33222 224577778888888887654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.08 E-value=3.1e-05 Score=63.68 Aligned_cols=93 Identities=15% Similarity=0.126 Sum_probs=55.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC----CCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCCc
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQM----RVKPD----PGVWGALLNSCKLHGHVKLAELALEKLIELEP------HDAG 344 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p------~~~~ 344 (512)
.+..+...|...|++++|.+.+++. +..++ ...+..+...+...|++++|...++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444455555555555544443 00011 23556666667777777777777777765421 1234
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 345 NYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
.+..+...|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666778888888888888888877654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.7e-05 Score=64.11 Aligned_cols=96 Identities=14% Similarity=0.069 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHhccCChHHHHHHHHhC-------CCCCC-HhH
Q 043142 244 FVGVLSACSRGGLFDEGRMFFESMVRDYHIDP----SVQHYTCMVDLLGHSGRLDEACDLIMQM-------RVKPD-PGV 311 (512)
Q Consensus 244 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~ 311 (512)
+..+...+...|++++|..+++...+...-.+ ....+..+...+...|++++|.+.+++. +..+. ...
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 33444444444555555544444432210001 1234444555555555555555555443 10111 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 043142 312 WGALLNSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 312 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
+..+...+...|++++|.+.++++++..
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 6667777778888888888888777643
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.7e-05 Score=65.99 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 310 GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 310 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
..|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 4777788888888888888888888888888888888888888888888888888888876643
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.03 E-value=9.9e-06 Score=76.70 Aligned_cols=147 Identities=12% Similarity=0.023 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 043142 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLL 287 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 287 (512)
..|..+...+.+.|++++|+..|++.....+ +... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p-~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG-DDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC-HHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 3455566666677777777777777654332 2211 122233333222110 12667777888
Q ss_pred hccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhccChhHHHH
Q 043142 288 GHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIY-ARAANWEGVAK 364 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~~ 364 (512)
.+.|++++|+..+++. ...| +...|..+..++...|++++|+..|+++++++|.++.++..|..+. ...+..+.+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888776 3344 4557888888888888888888888888888888877777777663 34456667777
Q ss_pred HHHHHHhCC
Q 043142 365 LRKLMIDRG 373 (512)
Q Consensus 365 ~~~~m~~~g 373 (512)
+++.|.+..
T Consensus 321 ~~~~~l~~~ 329 (338)
T 2if4_A 321 MYKGIFKGK 329 (338)
T ss_dssp ---------
T ss_pred HHHHhhCCC
Confidence 777776543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.1e-05 Score=76.62 Aligned_cols=124 Identities=10% Similarity=0.046 Sum_probs=98.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcC--CCC----ChhHHHHHHHHHhccCChHHHHHHHHhC---------CCCCCHh-HHH
Q 043142 250 ACSRGGLFDEGRMFFESMVRDYH--IDP----SVQHYTCMVDLLGHSGRLDEACDLIMQM---------RVKPDPG-VWG 313 (512)
Q Consensus 250 a~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~ 313 (512)
.+...|++++|+.++++..+... +.| ...+++.|...|...|++++|+.++++. +..|++. +++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45678999999998887765422 122 2467888999999999999999988776 2446555 899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCCc---hHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 314 ALLNSCKLHGHVKLAELALEKLIE-----LEPHDAG---NYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 314 ~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
.|...|...|++++|+.+++++++ ++|+.|. +...|..++...+++++|..+++++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986 3566544 44577888889999999999999998754
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.00 E-value=5.7e-06 Score=64.71 Aligned_cols=91 Identities=13% Similarity=0.088 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHHhcCC-CC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHH
Q 043142 254 GGLFDEGRMFFESMVRDYHI-DP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAE 329 (512)
Q Consensus 254 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~ 329 (512)
.|++++|+..|++.++. +. .| +...+..+...|.+.|++++|+..|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46677777777777632 10 24 4566777777788888888888877776 3334 3457777888888888888888
Q ss_pred HHHHHHHhcCCCCCch
Q 043142 330 LALEKLIELEPHDAGN 345 (512)
Q Consensus 330 ~~~~~~~~~~p~~~~~ 345 (512)
..++++++..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888888877643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.96 E-value=1.6e-05 Score=64.90 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=50.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC--------CCCCCHh-HH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQM--------RVKPDPG-VW----GALLNSCKLHGHVKLAELALEKLIELEPHDAGN 345 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~-~~----~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 345 (512)
.|..+..++.+.|++++|+..+++. .+.|+.. .| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 4555555555555555555555443 2377765 88 899999999999999999999999999987654
Q ss_pred HH
Q 043142 346 YV 347 (512)
Q Consensus 346 ~~ 347 (512)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00029 Score=71.31 Aligned_cols=169 Identities=10% Similarity=0.002 Sum_probs=132.1
Q ss_pred CCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCC----------hHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCC-
Q 043142 190 GLVKVARNLFEQLREK---RVVSWNAMITGYAMHGH----------STKALDLFEKMKDEVQPDHITFVGVLSACSRGG- 255 (512)
Q Consensus 190 g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g- 255 (512)
...++|.+.++.+.+. +...|+.--..+...|+ ++++++.++++....+-+..+|..-..++.+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 3446778888777643 34667776666666666 889999999998887777777877777778888
Q ss_pred -CHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccC-ChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHc--------
Q 043142 256 -LFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSG-RLDEACDLIMQM-RVKP-DPGVWGALLNSCKLH-------- 322 (512)
Q Consensus 256 -~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-------- 322 (512)
+++++...++++.+. .| +...|+.-...+.+.| .+++++++++++ ...| |...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 679999999999854 55 6777777777777888 888999998887 4444 455888777776653
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhH
Q 043142 323 ------GHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEG 361 (512)
Q Consensus 323 ------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 361 (512)
+.++++.+.+.++++.+|.+..+|..+...+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999998888555
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.93 E-value=6.8e-05 Score=62.28 Aligned_cols=104 Identities=13% Similarity=0.055 Sum_probs=69.7
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHC-------CC---------CCC-cchHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEI-------GL---------VPD-NFTFPFALKACSALSAIEEGRRIHEDVI 100 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~---------~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 100 (512)
+..|......+.+.|++++|+..|.+.+.. .- .|. ...|..+..++...|++++|...+..++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345667777888888888888888887653 00 111 2355666666677777777777777777
Q ss_pred HhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh
Q 043142 101 RNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA 142 (512)
Q Consensus 101 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~ 142 (512)
+.. +.+...|..+..+|...|++++|...|++..+.+|+..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 664 44566667777777777777777777777776666543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.91 E-value=3.6e-05 Score=72.83 Aligned_cols=151 Identities=9% Similarity=0.019 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCC
Q 043142 176 VKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGG 255 (512)
Q Consensus 176 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g 255 (512)
...+..+...|.+.|++++|...|++..+.+.... .+...++.+++...+. ...|..+..++.+.|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~---------~~~~~nla~~~~~~g 244 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK---------NPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH---------THHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH---------HHHHHHHHHHHHHcC
Confidence 45677888999999999999999998654322111 1222333344433221 136777888889999
Q ss_pred CHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHHHHH-HHHcCCHHHHHHH
Q 043142 256 LFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGALLNS-CKLHGHVKLAELA 331 (512)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~-~~~~g~~~~A~~~ 331 (512)
++++|...++..++. .| +...|..+..+|...|++++|+..|++. .+.|+.. .+..|... ....+..+.+...
T Consensus 245 ~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 245 RYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp CCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988754 55 6788888999999999999999999887 4556544 45444444 2445677888889
Q ss_pred HHHHHhcCCCCC
Q 043142 332 LEKLIELEPHDA 343 (512)
Q Consensus 332 ~~~~~~~~p~~~ 343 (512)
|+++++..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999988887654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.87 E-value=9.8e-05 Score=72.97 Aligned_cols=138 Identities=14% Similarity=0.033 Sum_probs=71.1
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
+...|..+...|.+.|++++|+..|++.+.. .|+...+ .-+...++- +....+|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL-----------SEKESKASE--------SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC-----------CHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC-----------ChHHHHHHH--------HHHHHHHHHHHH
Confidence 3456777778888888888888888887763 2332100 000000000 001234445555
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 043142 117 MYAKCSCVVNARQVFDKILERDPS-EATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVA 195 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 195 (512)
+|.+.|++++|+..|++..+.+|+ ...|..+..++...|++++|...|..+++.. +.+..++..+..++.+.|+.++|
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555442 2344455555555555555555555555432 22344555666666666666655
Q ss_pred H
Q 043142 196 R 196 (512)
Q Consensus 196 ~ 196 (512)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00015 Score=69.38 Aligned_cols=91 Identities=5% Similarity=-0.089 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC----------------C---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC
Q 043142 178 VKTALVDMYAKCGLVKVARNLFEQLRE----------------K---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ 238 (512)
Q Consensus 178 ~~~~li~~y~~~g~~~~A~~~~~~m~~----------------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 238 (512)
.+..+...|.+.|++++|.+.|++..+ . +...|+.+...|.+.|++++|+..+++..+..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 355566667777777777777665432 0 123344444444444444444444444444333
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 239 PDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 239 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
.+...+..+..++...|++++|...|++..
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al 334 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQ 334 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 334444444444444444444444444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00012 Score=55.26 Aligned_cols=65 Identities=25% Similarity=0.283 Sum_probs=58.6
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 308 DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+...|..+...+...|++++|+..|+++++.+|.++.+|..+..+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45688889999999999999999999999999999999999999999999999999999887654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.77 E-value=7.1e-05 Score=57.29 Aligned_cols=91 Identities=11% Similarity=-0.038 Sum_probs=69.0
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHD------AGNYV 347 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 347 (512)
+...+..+...+.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++.+|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3456667777888888888888888776 3334 45688888889999999999999999999999987 56666
Q ss_pred HHHHHHHhccChhHHHHHH
Q 043142 348 ILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~ 366 (512)
.+..++...|+++.|...+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 7777777777666655444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.76 E-value=8.7e-05 Score=57.48 Aligned_cols=78 Identities=10% Similarity=0.065 Sum_probs=58.9
Q ss_pred HHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 295 EACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 295 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+|++.+++. ...| +...|..+...+...|++++|+..++++++.+|.++..|..+..+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555544 3344 44577778888888888888888888888888888888888888888888888888888877653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00017 Score=52.72 Aligned_cols=81 Identities=21% Similarity=0.284 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 043142 277 VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYA 354 (512)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 354 (512)
...+..+...+.+.|++++|+..+++. ...| +...|..+...+...|++++|...++++++.+|.++..+..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456666777777778888888777766 2233 45577788888888889999999999988888888888887777776
Q ss_pred hcc
Q 043142 355 RAA 357 (512)
Q Consensus 355 ~~g 357 (512)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.64 E-value=5.8e-05 Score=57.78 Aligned_cols=93 Identities=6% Similarity=0.048 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-------hhHH
Q 043142 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS-------VQHY 280 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~ 280 (512)
..|..+...+...|++++|+..|++.....+.+...+..+..++...|++++|...++..+ .+.|+ ...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL---RYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCccHHHHHHHHH
Confidence 4556666677777777777777777776666666777777777777777777777777776 34554 3445
Q ss_pred HHHHHHHhccCChHHHHHHHHhC
Q 043142 281 TCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~m 303 (512)
..+..++...|+.++|...++++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 55555555555555555544443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00039 Score=68.73 Aligned_cols=25 Identities=8% Similarity=-0.075 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHH
Q 043142 176 VKVKTALVDMYAKCGLVKVARNLFE 200 (512)
Q Consensus 176 ~~~~~~li~~y~~~g~~~~A~~~~~ 200 (512)
..+++.|...|...|++++|+.+|+
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~ 417 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMIC 417 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4566777777777777777777664
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=6.9e-05 Score=61.06 Aligned_cols=86 Identities=12% Similarity=0.105 Sum_probs=60.9
Q ss_pred ccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 043142 289 HSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGH----------VKLAELALEKLIELEPHDAGNYVILSNIYARA 356 (512)
Q Consensus 289 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 356 (512)
|.+.+++|++.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..+..+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 334455555555444 2233 33355545555544443 57999999999999999999999999999887
Q ss_pred c-----------ChhHHHHHHHHHHhCCC
Q 043142 357 A-----------NWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 357 g-----------~~~~a~~~~~~m~~~g~ 374 (512)
| ++++|.+.|++..+.+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 5 89999999999887653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00063 Score=50.25 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=59.5
Q ss_pred CCHhHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 307 PDPGVWGALLNSCKLHGH---VKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 307 p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
+|...+..+..++...++ .++|..+++++++.+|.++.+...+...+...|++++|...|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456677777777765555 799999999999999999999999999999999999999999999887654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00027 Score=54.59 Aligned_cols=79 Identities=14% Similarity=0.064 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043142 260 GRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLI 336 (512)
Q Consensus 260 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 336 (512)
|...|+...+ ..| +...+..+...|.+.|++++|+..+++. ...| +...|..+...+...|++++|...|++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555542 344 4566666667777777777777777665 2233 34467777777777888888888888777
Q ss_pred hcCCC
Q 043142 337 ELEPH 341 (512)
Q Consensus 337 ~~~p~ 341 (512)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 76653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.011 Score=59.75 Aligned_cols=134 Identities=13% Similarity=0.011 Sum_probs=73.0
Q ss_pred hHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC-CHHHHHHHH
Q 043142 124 VVNARQVFDKILERDPSE-ATLVTVISASADIA--ALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCG-LVKVARNLF 199 (512)
Q Consensus 124 ~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~~ 199 (512)
++++++.++++.+.+|.. .+|..-.-++.+.+ +++++.+.++.+++.. +-+..+|+--..++.+.| .++++.+.+
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~ 167 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 167 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHH
Confidence 344444444444444322 23333333333333 2344444444444432 224455555555555566 677777777
Q ss_pred HhcCCCC---chHHHHHHHHHHHc--------------CChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHH
Q 043142 200 EQLREKR---VVSWNAMITGYAMH--------------GHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFD 258 (512)
Q Consensus 200 ~~m~~~~---~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~ 258 (512)
+++.+.+ ..+|+-....+... +.++++++.+++.....+-|...|.-+-..+.+.+..+
T Consensus 168 ~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 168 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 7776544 45666666555542 44678888888887776766777776666666666533
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0022 Score=51.42 Aligned_cols=90 Identities=11% Similarity=-0.046 Sum_probs=48.5
Q ss_pred HHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---
Q 043142 283 MVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKL----HGHVKLAELALEKLIELEPHDAGNYVILSNIYAR--- 355 (512)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 355 (512)
|..+|...+..++|.++|++.-..-+...+..|...|.. .+++++|.+.|+++.+.+ ++.++..|..+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHCCCC
Confidence 444444444555555555544212344445555555554 556666666666665542 34455566666665
Q ss_pred -ccChhHHHHHHHHHHhCCC
Q 043142 356 -AANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 356 -~g~~~~a~~~~~~m~~~g~ 374 (512)
.+++++|.+.+++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 5666666666666655543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00028 Score=57.45 Aligned_cols=99 Identities=12% Similarity=0.010 Sum_probs=68.2
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC----------hHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 043142 50 WNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSA----------IEEGRRIHEDVIRNKWETDVFVGAALIDMYA 119 (512)
Q Consensus 50 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 119 (512)
+.+.+++|++.++...+... -+...|..+..++...++ +++|+..|++.++.. +.+..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 44556667777776665431 134455555555555544 458888888888876 446677888888887
Q ss_pred hCC-----------ChHHHHHHHHhhhhCCCChhHHHHHHHH
Q 043142 120 KCS-----------CVVNARQVFDKILERDPSEATLVTVISA 150 (512)
Q Consensus 120 ~~g-----------~~~~A~~~~~~m~~~~pd~~t~~~ll~~ 150 (512)
+.| ++++|++.|++..+.+|+...|...+..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 764 8999999999999999987776655544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00058 Score=66.48 Aligned_cols=116 Identities=9% Similarity=0.102 Sum_probs=83.3
Q ss_pred HHHHhccCChHHHHHHHHhC---------CCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---Cch
Q 043142 284 VDLLGHSGRLDEACDLIMQM---------RVKPDP-GVWGALLNSCKLHGHVKLAELALEKLIEL-----EPHD---AGN 345 (512)
Q Consensus 284 i~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~p~~---~~~ 345 (512)
+..+.+.|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++. +|.. ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44456678888888887765 122333 37888889999999999999999988853 3444 346
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHhCCCccCCceeeEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 043142 346 YVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMK 417 (512)
Q Consensus 346 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 417 (512)
++.|..+|...|++++|..++++..+--.. .--..||...+++..|.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 778899999999999999999887652110 001358888888877777776665
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0055 Score=49.05 Aligned_cols=112 Identities=13% Similarity=-0.063 Sum_probs=90.2
Q ss_pred CChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----cCChHHH
Q 043142 221 GHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGH----SGRLDEA 296 (512)
Q Consensus 221 g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 296 (512)
+++++|+..|++..+.+.|+.. |...|...+.+++|...|++..+. -+...+..|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4578899999998888766655 666777778888899999988643 356777888888887 7899999
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 043142 297 CDLIMQMRVKPDPGVWGALLNSCKL----HGHVKLAELALEKLIELEP 340 (512)
Q Consensus 297 ~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p 340 (512)
.++|++.-..-+...+..|...|.. .++.++|.+.|+++.+.+.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999888334567788888888888 8999999999999988764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00096 Score=50.03 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
..|..+...|...|++++|+..|++..+..+.+...|..+..++...|++++|...|++.+
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444445555555555555444444333444444445555555555555554443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0034 Score=45.49 Aligned_cols=60 Identities=15% Similarity=0.351 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
.|..+...+...|++++|+..|++.....+.+...+..+..++...|++++|...+++..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444455555555555555555554444444455555555555555555555555554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.006 Score=64.85 Aligned_cols=152 Identities=13% Similarity=0.018 Sum_probs=96.4
Q ss_pred HHHccCChHHHHH-HHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHH
Q 043142 16 LYSACDCLHNAHQ-LFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRR 94 (512)
Q Consensus 16 ~y~~~g~~~~A~~-~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 94 (512)
.....+++++|.+ ++..++. ......++..+.+.|.+++|+++.+.-. .-.......|+++.|.+
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARD 673 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHH
Confidence 3345788999988 6655541 1233777788888899888887753211 11233456789998888
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 043142 95 IHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFEL 174 (512)
Q Consensus 95 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 174 (512)
+.+. -.+...|..|...+.+.|+++.|.+.|.++.. |..+...+...++.+...++-+.....|.
T Consensus 674 ~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-- 738 (814)
T 3mkq_A 674 LLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD-------LESLFLLHSSFNNKEGLVTLAKDAETTGK-- 738 (814)
T ss_dssp HHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC--
T ss_pred HHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc--
Confidence 7543 24678899999999999999999999988743 33344444445666655555444444431
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHH
Q 043142 175 NVKVKTALVDMYAKCGLVKVARNLFE 200 (512)
Q Consensus 175 ~~~~~~~li~~y~~~g~~~~A~~~~~ 200 (512)
++....+|.+.|++++|.+++.
T Consensus 739 ----~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 739 ----FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp ----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred ----hHHHHHHHHHcCCHHHHHHHHH
Confidence 2333444555666666655543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0098 Score=55.56 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=29.5
Q ss_pred CCCchHHHHHHHHHH--HcCC---hHHHHHHHHHhHHCCCCCHHHHHHHHHHH
Q 043142 204 EKRVVSWNAMITGYA--MHGH---STKALDLFEKMKDEVQPDHITFVGVLSAC 251 (512)
Q Consensus 204 ~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~~~p~~~t~~~ll~a~ 251 (512)
..+..+|...+.+.. ..+. ..+|..+|++..+..|-....+..+.-++
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345667777665543 2333 46788888888877665555555544444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00068 Score=65.87 Aligned_cols=83 Identities=16% Similarity=0.019 Sum_probs=64.8
Q ss_pred ccCChHHHHHHHHhC---------CCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---CchHHHHH
Q 043142 289 HSGRLDEACDLIMQM---------RVKPDPG-VWGALLNSCKLHGHVKLAELALEKLIEL-----EPHD---AGNYVILS 350 (512)
Q Consensus 289 ~~g~~~~A~~~~~~m---------~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~ 350 (512)
..|++++|+.++++. +..|+.. +++.|..+|...|++++|+.+++++++. +|+. ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346788888877665 2334443 8889999999999999999999998863 4444 45778899
Q ss_pred HHHHhccChhHHHHHHHHHHh
Q 043142 351 NIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~m~~ 371 (512)
.+|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988765
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.003 Score=61.36 Aligned_cols=93 Identities=11% Similarity=-0.082 Sum_probs=72.0
Q ss_pred cCCCHHHHHHHHHHHHHhcC--CCC----ChhHHHHHHHHHhccCChHHHHHHHHhC---------CCCCCHh-HHHHHH
Q 043142 253 RGGLFDEGRMFFESMVRDYH--IDP----SVQHYTCMVDLLGHSGRLDEACDLIMQM---------RVKPDPG-VWGALL 316 (512)
Q Consensus 253 ~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~~ll 316 (512)
..|++++|+.++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|++. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46788888888887765321 223 2467888899999999999999988776 3456665 899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHh-----cCCCCCch
Q 043142 317 NSCKLHGHVKLAELALEKLIE-----LEPHDAGN 345 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~ 345 (512)
..|..+|++++|+.+++++++ ++|+.|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999986 36766543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0049 Score=59.88 Aligned_cols=101 Identities=11% Similarity=0.021 Sum_probs=76.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcC--CCC----ChhHHHHHHHHHhccCChHHHHHHHHhC---------CCCCCHh
Q 043142 246 GVLSACSRGGLFDEGRMFFESMVRDYH--IDP----SVQHYTCMVDLLGHSGRLDEACDLIMQM---------RVKPDPG 310 (512)
Q Consensus 246 ~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~ 310 (512)
..+..+...|++++|+.++++..+... +.| ...+++.|...|...|++++|+.++++. +..|+..
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 335556677899999998888864321 223 2467888888999999999999888766 3456554
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCCchH
Q 043142 311 -VWGALLNSCKLHGHVKLAELALEKLIE-----LEPHDAGNY 346 (512)
Q Consensus 311 -~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~ 346 (512)
+++.|...|...|++++|+.+++++++ ++|+.|.+-
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 889999999999999999999999986 467766443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0031 Score=46.81 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=36.7
Q ss_pred HHHHhccCChHHHHHHHHhC-CCCC-CHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 043142 284 VDLLGHSGRLDEACDLIMQM-RVKP-DPG-VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNY 346 (512)
Q Consensus 284 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 346 (512)
...+.+.|++++|+..+++. ...| +.. .|..+..++...|++++|...|+++++.+|.++.++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34455666666666666555 2223 334 555566666666666666666666666666655444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0073 Score=44.67 Aligned_cols=85 Identities=13% Similarity=0.109 Sum_probs=52.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCCC-Chh-HHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHHHHHHHHc
Q 043142 247 VLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQ-HYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGALLNSCKLH 322 (512)
Q Consensus 247 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~ 322 (512)
....+...|++++|...|+.+++. .| +.. .+..+..+|.+.|++++|.+.|++. ...|+.. .+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 445566777777777777777643 44 455 6777777777777777777777766 3334332 2211
Q ss_pred CCHHHHHHHHHHHHhcCCCC
Q 043142 323 GHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 323 g~~~~A~~~~~~~~~~~p~~ 342 (512)
+.+.++...+++....+|.+
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHHhccCccc
Confidence 44556666666665555544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.018 Score=53.80 Aligned_cols=158 Identities=8% Similarity=-0.065 Sum_probs=92.3
Q ss_pred HHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHh--cCC---chHHHHHHHHHHHCCCCCCc-chHHHHHHHHh
Q 043142 11 TKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAW--NGP---YEVAIELYYRLLEIGLVPDN-FTFPFALKACS 84 (512)
Q Consensus 11 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~---~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~ 84 (512)
..++..+.-.-...++.+.... +..|..+|...+++... .+. ..+|..+|++.++. .|+. ..|..+.-++.
T Consensus 168 ~~I~~aL~~~l~~~e~~r~~~~-~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 168 ESLSKALNQPWPQRMQETLQKI-LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDI 244 (372)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHH-SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCchhhHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3444444433333344444433 34477888888876543 333 46899999999884 5653 34443333332
Q ss_pred c---cC--ChHHH---HHHHHHHHH-hCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccC
Q 043142 85 A---LS--AIEEG---RRIHEDVIR-NKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIA 155 (512)
Q Consensus 85 ~---~~--~~~~a---~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~ 155 (512)
. .+ .-... .+.+..... ...+.+..++.++...+...|++++|...++++...+|+...|..+...+.-.|
T Consensus 245 ~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G 324 (372)
T 3ly7_A 245 VRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKG 324 (372)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTT
T ss_pred HHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 1 01 11111 111111111 112556777777776666678888888888888887777666666666777778
Q ss_pred ChHHHHHHHHHHHHcC
Q 043142 156 ALPQGRELHGFSWRHR 171 (512)
Q Consensus 156 ~~~~a~~~~~~~~~~g 171 (512)
+.++|.+.+.++....
T Consensus 325 ~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 325 MNREAADAYLTAFNLR 340 (372)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhcC
Confidence 8888888887777754
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.2 Score=38.87 Aligned_cols=139 Identities=9% Similarity=0.040 Sum_probs=94.1
Q ss_pred HcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHH
Q 043142 219 MHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACD 298 (512)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 298 (512)
-.|..++..++..+...... ..-|+-++.-....-+-+-..+.++.+-+-+. ...+|++.....
T Consensus 19 ldG~v~qGveii~k~~~ssn--i~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD--------------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSST--KSEYNWFICNLLESIDCRYMFQVLDKIGSYFD--------------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHSC--HHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC--------------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCCC--ccccceeeeecchhhchhHHHHHHHHHhhhcC--------------cHhhhcHHHHHH
Confidence 35666666666666654322 22233333222233334444445554432222 235667777777
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 299 LIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 299 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
.+-.++ .+.......+.....+|..+.-.+++..++..+++++....-+..+|.+.|+..+|.+++.+.-++|++
T Consensus 83 C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 83 CGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 766664 345566778888999999999999999987778888999999999999999999999999999999985
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.038 Score=44.35 Aligned_cols=65 Identities=11% Similarity=0.009 Sum_probs=39.2
Q ss_pred CCHhHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 307 PDPGVWGALLNSCKLHG---HVKLAELALEKLIELE-P-HDAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 307 p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
++..+.-.+.-++.+.+ +.++++.+++++.+.+ | .+...+..|.-+|.+.|++++|++.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44445555555555555 4556666666666665 4 2345556666666677777777777666655
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.1 Score=55.31 Aligned_cols=101 Identities=8% Similarity=-0.025 Sum_probs=67.9
Q ss_pred HHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChH
Q 043142 11 TKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIE 90 (512)
Q Consensus 11 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 90 (512)
..++..+.+.|..++|.++.+.- ..-.....+.|++++|+++.+.+ .+...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHH
Confidence 67778888888888888776421 11133456678888888876543 35567888888888888888
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhh
Q 043142 91 EGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKI 134 (512)
Q Consensus 91 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 134 (512)
.|++.|..+.. |..+...|...|+.+...++-+..
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 88888887632 344555566667666655544333
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.053 Score=39.70 Aligned_cols=67 Identities=7% Similarity=-0.030 Sum_probs=40.4
Q ss_pred cchHHHHHHHHhccCC---hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC
Q 043142 73 NFTFPFALKACSALSA---IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 73 ~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd 140 (512)
...+..+..++...++ .++|.+++++.++.. +.++.....+...+.+.|++++|+..|+++.+.+|+
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3344444444433322 566666666666664 445566666666677777777777777777766665
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.05 E-value=2.2e-06 Score=81.34 Aligned_cols=261 Identities=13% Similarity=0.125 Sum_probs=175.4
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
....|..|..+....|+..+|++-|-+. -|...|..++.++.+.|.++.-...+....+. ..++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 4567999999999999999998877432 25567999999999999999988888766554 456667789999
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHH
Q 043142 117 MYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVAR 196 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 196 (512)
+|+|.+++.+-.+++ .+||..-...+..-|...|.++.|+-+|..+ .-|..|...+.+.|++..|.
T Consensus 125 ayAk~~rL~elEefl-----~~~N~A~iq~VGDrcf~e~lYeAAKilys~i---------sN~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HHHTSCSSSTTTSTT-----SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSCSGGGSST
T ss_pred HHHhhCcHHHHHHHH-----cCCCcccHHHHHHHHHHccCHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHHH
Confidence 999999977655443 2377777888888898889888888777533 22344556667777777665
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC-C
Q 043142 197 NLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHID-P 275 (512)
Q Consensus 197 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p 275 (512)
+.-++ ..++.+|..+-.+|...+.+.-|.-.--.+.- ...-...++..|...|.+++-+.+++.-. |++ .
T Consensus 191 daArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv----hadeL~elv~~YE~~G~f~ELIsLlEagl---glErA 261 (624)
T 3lvg_A 191 DGARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----HADELEELINYYQDRGYFEELITMLEAAL---GLERA 261 (624)
T ss_dssp TTTTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----CSSCCSGGGSSSSTTCCCTTSTTTHHHHT---TSTTC
T ss_pred HHHHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhcc----cHHHHHHHHHHHHhCCCHHHHHHHHHHHh---CCCch
Confidence 43222 24567888888888888877655443333221 11112235556777788888777777664 443 3
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC----CCC------CCHhHHHHHHHHHHHcCCHHHHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQM----RVK------PDPGVWGALLNSCKLHGHVKLAE 329 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~------p~~~~~~~ll~~~~~~g~~~~A~ 329 (512)
....++-|.-.|++- +.++..+.++.. .+. -+...|.-++-.|....+++.|.
T Consensus 262 HmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 262 HMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 667777777777765 445555554443 111 12335667777777777766554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.032 Score=50.02 Aligned_cols=87 Identities=14% Similarity=0.171 Sum_probs=65.3
Q ss_pred hHHHHHHHHhC-CCCCC---HhHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhc-cChhH
Q 043142 293 LDEACDLIMQM-RVKPD---PGVWGALLNSCKL-----HGHVKLAELALEKLIELEPHD-AGNYVILSNIYARA-ANWEG 361 (512)
Q Consensus 293 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 361 (512)
..+|...+++. .+.|+ ...|..|...|.. .|+.++|++.|+++++++|+. ..++....+.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34445555444 34555 3467777777777 489999999999999999974 88999999988884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 043142 362 VAKLRKLMIDRGIKKSIA 379 (512)
Q Consensus 362 a~~~~~~m~~~g~~~~~~ 379 (512)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877664443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.043 Score=41.16 Aligned_cols=72 Identities=15% Similarity=0.057 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-----C----CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHH
Q 043142 277 VQHYTCMVDLLGHSGRLDEACDLIMQM-----R----VKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYV 347 (512)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 347 (512)
..-+..|...+.+.|++..|..+++.. + -.+....+..|..++.+.|+++.|...++++++..|.++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334445566666666666666666554 0 1133457888999999999999999999999999998876543
Q ss_pred H
Q 043142 348 I 348 (512)
Q Consensus 348 ~ 348 (512)
.
T Consensus 85 n 85 (104)
T 2v5f_A 85 N 85 (104)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.00065 Score=64.88 Aligned_cols=237 Identities=13% Similarity=0.101 Sum_probs=164.6
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 043142 6 HPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSA 85 (512)
Q Consensus 6 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 85 (512)
.+.+|+.|..++.+.|++.+|+.-| +...|+..|..+|.+..+.|.+++-+..+.-.++..- +...=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 4668999999999999999998777 4455777888999999999999998888876655422 44556788999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC----------------------CChhH
Q 043142 86 LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD----------------------PSEAT 143 (512)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------------------pd~~t 143 (512)
.+++.+-++++. .||..-...+.+-+...|.++.|.-+|..+..-. -+..|
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 998776554432 4666666778888888888888888887765432 46678
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHc
Q 043142 144 LVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR---EKRVVSWNAMITGYAMH 220 (512)
Q Consensus 144 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 220 (512)
|-.+-.+|...+.+..|...--.++-.. + -...++..|-+.|.+++-+.+++.-. +.-.-.++-|.-.|++-
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 9999999999988877654433333221 1 12346777889999999888888754 33456677777777765
Q ss_pred CChHHHHHHHHHhHHC-CCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 043142 221 GHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFE 265 (512)
Q Consensus 221 g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 265 (512)
++++..+.++..-.. ++|- ++++|.+...|.++.-++.
T Consensus 277 -~PeKlmEHlklf~sriNipK------viracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 277 -KPQKMREHLELFWSRVNIPK------VLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp -CTTHHHHHHTTSSSSSCCTT------THHHHTTTTCHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHhccHHH------HHHHHHHHhhHHHHHHHHh
Confidence 566766666554332 1243 4455555555555444433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.07 Score=42.81 Aligned_cols=85 Identities=11% Similarity=-0.071 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC---ChHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhCCChHHHHH
Q 043142 55 EVAIELYYRLLEIGLVPDNFTFPFALKACSALS---AIEEGRRIHEDVIRNKWET--DVFVGAALIDMYAKCSCVVNARQ 129 (512)
Q Consensus 55 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~ 129 (512)
..+.+-|.+....|. ++..+...+..++++.+ +++++..+++.+.+.. .| +...+-.|.-+|.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 455666666666554 56667777777888877 6668999999988875 23 23444456677889999999999
Q ss_pred HHHhhhhCCCCh
Q 043142 130 VFDKILERDPSE 141 (512)
Q Consensus 130 ~~~~m~~~~pd~ 141 (512)
.|+.+.+.+|+.
T Consensus 93 y~~~lL~ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHhcCCCC
Confidence 999999888853
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.42 Score=39.34 Aligned_cols=129 Identities=14% Similarity=0.128 Sum_probs=80.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 043142 184 DMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMF 263 (512)
Q Consensus 184 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~ 263 (512)
+...++|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+..+ |..+.-.|.-.|+.+.-.++
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHH
Confidence 3446678888888887766 3466788888888888888888888877642 34444445556666665554
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043142 264 FESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKL 335 (512)
Q Consensus 264 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 335 (512)
-+....+ | -++.....+.-.|+++++.+++.+.+.-|... -....+|-.+.|.++.+++
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 4443222 1 23444555666788888888887775322211 1123456666676666554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.23 E-value=1.1 Score=36.96 Aligned_cols=103 Identities=6% Similarity=-0.041 Sum_probs=60.9
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHH
Q 043142 82 ACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGR 161 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~ 161 (512)
.....|+++.|.++.+.+ .+...|..|.+...+.|+++-|.+.|.+... +..+.-.|.-.|+.+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCCHHHHH
Confidence 344567777777776554 3566788888888888888888888777642 333333444455555555
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043142 162 ELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR 203 (512)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 203 (512)
.+-+.....| -++.....+.-.|+++++.++|.+..
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 4444444443 12333444455666666666665443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.092 Score=39.26 Aligned_cols=68 Identities=18% Similarity=-0.028 Sum_probs=44.3
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh
Q 043142 75 TFPFALKACSALSAIEEGRRIHEDVIRNK------WETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA 142 (512)
Q Consensus 75 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~ 142 (512)
.+..+...+...++++.|...++..++.- -.+...++..|..+|.+.|+++.|...+++..+.+|+..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 34445555566666666666666555431 123456777788888888888888888888877777543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.53 E-value=5.7 Score=41.99 Aligned_cols=90 Identities=8% Similarity=-0.047 Sum_probs=50.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCCCC--------------chHHHHHHH----HHHhcCCch----HHHHHHHHHHH
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQRN--------------LFLWNVLIR----AYAWNGPYE----VAIELYYRLLE 66 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~--------------~~~~~~li~----~~~~~g~~~----~A~~~~~~m~~ 66 (512)
+...++..+.+.|...+|..+.-+..+-| ...|..++. +....-..+ +.+++.-++..
T Consensus 147 Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~ 226 (963)
T 4ady_A 147 IFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLM 226 (963)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Confidence 45677777778888888877766654311 123333332 222222222 22222222211
Q ss_pred CCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHH
Q 043142 67 IGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIR 101 (512)
Q Consensus 67 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 101 (512)
. . +..-|..+++...+.++.+.+.++|..+.+
T Consensus 227 k-~--~~~dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 227 N-M--PNCDYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp H-S--SSCCHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred h-C--CchhHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 1 112477778888889999999999998764
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.14 Score=40.67 Aligned_cols=55 Identities=11% Similarity=-0.075 Sum_probs=40.9
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 321 LHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 321 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
..+|.++|.++|+.+++....-+..|...+..-.+.|+.+.|.+++.+....+.+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3478888888888888764434556666677777889999999998888776654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.44 Score=42.73 Aligned_cols=90 Identities=13% Similarity=0.014 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhC-----CChHHHHHHHHhhhhCCCC--hhHHHHHHHHHhc-cCCh
Q 043142 89 IEEGRRIHEDVIRNKWETD---VFVGAALIDMYAKC-----SCVVNARQVFDKILERDPS--EATLVTVISASAD-IAAL 157 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~pd--~~t~~~ll~~~~~-~~~~ 157 (512)
...|+..+++.++.. |+ -..|..|...|.+. |+.++|.+.|++..+.+|+ ..++......++. .|+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 355666677777663 33 55777788888774 7888888888888887774 4566666666666 3777
Q ss_pred HHHHHHHHHHHHcCCC--CchHHHH
Q 043142 158 PQGRELHGFSWRHRFE--LNVKVKT 180 (512)
Q Consensus 158 ~~a~~~~~~~~~~g~~--~~~~~~~ 180 (512)
+.+.+.+++.+..... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 7777777777776544 5544444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.30 E-value=0.86 Score=36.15 Aligned_cols=104 Identities=20% Similarity=0.223 Sum_probs=69.2
Q ss_pred CCCCchHHHHHHHHHHhcCCc------hHHHHHHHHHHHCCCCCCcc----hHHHHHHH---HhccCChHHHHHHHHHHH
Q 043142 34 PQRNLFLWNVLIRAYAWNGPY------EVAIELYYRLLEIGLVPDNF----TFPFALKA---CSALSAIEEGRRIHEDVI 100 (512)
Q Consensus 34 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----t~~~ll~~---~~~~~~~~~a~~~~~~~~ 100 (512)
...|..+|-..+...-+.|++ ++.+++|++.... ++|+.. .|..+.-- +...+++++|+++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345888999889888888999 8888899988764 666532 12222111 123367777788887776
Q ss_pred HhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCC
Q 043142 101 RNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDP 139 (512)
Q Consensus 101 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p 139 (512)
+.+-.- ..+|-.....-.+.|+++.|++++.+.....|
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 653222 66666666666777777777777777766655
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.24 E-value=2.3 Score=33.04 Aligned_cols=139 Identities=9% Similarity=-0.011 Sum_probs=86.9
Q ss_pred hCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 043142 120 KCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLF 199 (512)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 199 (512)
-.|.+++..++..+..... +..-++.++--....-+-+...++++.+-+ -.| ...||++......+
T Consensus 19 ldG~v~qGveii~k~~~ss-ni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi~C~ 84 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS-TKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVECG 84 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS-CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC-CccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHHHHH
Confidence 3566777777776665543 233344444333333344433333333221 111 24567776666666
Q ss_pred HhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 043142 200 EQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHID 274 (512)
Q Consensus 200 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 274 (512)
-.+.. +....+.-+..+..+|+-++-.+++..+.....|++.....+..||.+.|+..++..++.+..++ |++
T Consensus 85 ~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 85 VINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp HHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence 65532 33445566777888999988888888876655588888888999999999999999999988754 653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.17 E-value=1.2 Score=46.06 Aligned_cols=52 Identities=15% Similarity=0.030 Sum_probs=49.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 319 CKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
|...|+++.|+++.+++...-|.+-.+|..|+..|.+.|+|+.|+-.++.+.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 6788999999999999999999999999999999999999999999999874
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.72 E-value=0.33 Score=37.42 Aligned_cols=87 Identities=9% Similarity=-0.096 Sum_probs=53.6
Q ss_pred chHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHH---HHHHHHHHHHhCCC-CChhHHHHHHHHHHhCCChHHHHH
Q 043142 54 YEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEE---GRRIHEDVIRNKWE-TDVFVGAALIDMYAKCSCVVNARQ 129 (512)
Q Consensus 54 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~ 129 (512)
...+.+-|.+....|. |+..+-..+..++.+..+... +..+++.+.+.+.+ ......-.|.-++.|.|++++|++
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3445555555544443 555565566667777665554 77777777765411 122233345567778888888888
Q ss_pred HHHhhhhCCCCh
Q 043142 130 VFDKILERDPSE 141 (512)
Q Consensus 130 ~~~~m~~~~pd~ 141 (512)
.++.+.+..|+.
T Consensus 96 ~~~~lL~~eP~n 107 (126)
T 1nzn_A 96 YVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHHhCCCC
Confidence 888888777753
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.10 E-value=1.4 Score=33.97 Aligned_cols=73 Identities=12% Similarity=-0.076 Sum_probs=44.1
Q ss_pred CChhHHHHHHHHHhccCChHH---HHHHHHhC-CCC-C--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHH
Q 043142 275 PSVQHYTCMVDLLGHSGRLDE---ACDLIMQM-RVK-P--DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYV 347 (512)
Q Consensus 275 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 347 (512)
|+..+--.+.-++.++....+ ++.+++.. ... | .....-.|.-++.+.|++++|.+.++.+++.+|.|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 444444445555555554444 45555544 111 2 1123345666788899999999999999999998865443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.48 E-value=0.52 Score=44.92 Aligned_cols=70 Identities=14% Similarity=0.027 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh-----CCCccCCce
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMID-----RGIKKSIAC 380 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~ 380 (512)
....++..+...|+.+++...++.+...+|-+...|..|+.+|.+.|+..+|++.|+...+ .|+.|.+..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455677788899999999999999999999989999999999999999999999988753 588887753
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.88 E-value=3.5 Score=29.88 Aligned_cols=90 Identities=10% Similarity=0.022 Sum_probs=66.4
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHH
Q 043142 153 DIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEK 232 (512)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 232 (512)
.....++|..|-+.+...+- ...+--.-+..+...|++++|..+.+....||++.|.++-. .+.|..+++..-+.+
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 34457788888887777664 33333333455678999999999999999999999988765 467888888888888
Q ss_pred hHHCCCCCHHHHHH
Q 043142 233 MKDEVQPDHITFVG 246 (512)
Q Consensus 233 m~~~~~p~~~t~~~ 246 (512)
+...|.|....|..
T Consensus 94 la~sg~p~~q~Fa~ 107 (115)
T 2uwj_G 94 LGGSSDPALADFAA 107 (115)
T ss_dssp HHTCSSHHHHHHHH
T ss_pred HHhCCCHHHHHHHH
Confidence 88777776666654
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=90.61 E-value=3.7 Score=29.77 Aligned_cols=90 Identities=12% Similarity=0.059 Sum_probs=66.6
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHH
Q 043142 153 DIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEK 232 (512)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 232 (512)
.....++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||++.|.++-. .+.|..+++..-+.+
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 34567788888887777664 33333333455678999999999999999999999988865 467888888888878
Q ss_pred hHHCCCCCHHHHHH
Q 043142 233 MKDEVQPDHITFVG 246 (512)
Q Consensus 233 m~~~~~p~~~t~~~ 246 (512)
+...|.|....|..
T Consensus 95 la~sg~p~~q~Fa~ 108 (116)
T 2p58_C 95 LARSQDPRIQTFVN 108 (116)
T ss_dssp HTTCCCHHHHHHHH
T ss_pred HHhCCCHHHHHHHH
Confidence 87777776666654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.15 E-value=7.8 Score=42.65 Aligned_cols=162 Identities=9% Similarity=-0.044 Sum_probs=88.9
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC-CChhHHHHHHHHHhccCC
Q 043142 78 FALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD-PSEATLVTVISASADIAA 156 (512)
Q Consensus 78 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-pd~~t~~~ll~~~~~~~~ 156 (512)
.++..+...+..+.+.++.... +.++...-.+..+|..+|++++|...|.+....- .+.... ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~----------~~ 881 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF----------AV 881 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC----------SS
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh----------hh
Confidence 3444555556666555543322 3444444456677888888888888887763211 000000 00
Q ss_pred hHHHHHHHHHHHHcC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCc----hHHHHHHHHHHHcCChHHH
Q 043142 157 LPQGRELHGFSWRHR--FELNVKVKTALVDMYAKCGLVKVARNLFEQL----REKRV----VSWNAMITGYAMHGHSTKA 226 (512)
Q Consensus 157 ~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m----~~~~~----~~~~~li~~~~~~g~~~~A 226 (512)
.. . ...+.... ...-..-|.-++..+.+.|.++.+.+.-... ...+. ..|..+..++...|++++|
T Consensus 882 ~~---~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 882 LR---E-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp HH---H-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred hc---c-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 00 0 01111110 1112345666777777777777666554332 22221 2588888999999999999
Q ss_pred HHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHH
Q 043142 227 LDLFEKMKDEVQPDHITFVGVLSACSRGGLFDE 259 (512)
Q Consensus 227 ~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~ 259 (512)
...+-.+..... -...+..|+..++..|..+.
T Consensus 958 y~aL~~~pd~~~-r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 958 HVALMVLSTTPL-KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp GHHHHHHHHSSS-CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHhCCCHHH-HHHHHHHHHHHHHhCCChhh
Confidence 998887765432 23445556666666665443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.02 E-value=6.7 Score=43.19 Aligned_cols=143 Identities=10% Similarity=-0.027 Sum_probs=79.7
Q ss_pred HHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-----------------
Q 043142 11 TKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN----------------- 73 (512)
Q Consensus 11 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------- 73 (512)
..++..+.+.+..+.|+++....+. +..+--.+..+|...|++++|.+.|.+.-. |+..+.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccc
Confidence 3455556667777777776655543 444434556677888999999998876521 221111
Q ss_pred ------chHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhH
Q 043142 74 ------FTFPFALKACSALSAIEEGRRIHEDVIRNKWETDV----FVGAALIDMYAKCSCVVNARQVFDKILERDPSEAT 143 (512)
Q Consensus 74 ------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t 143 (512)
.-|..++..+.+.+.++.+.++-...++..-+.+. ..|..+.+.+...|++++|...+-.++...--...
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c 973 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC 973 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence 11444555566666666666666555554322121 24566666666677777776666666543322333
Q ss_pred HHHHHHHHhccC
Q 043142 144 LVTVISASADIA 155 (512)
Q Consensus 144 ~~~ll~~~~~~~ 155 (512)
+..++...+..+
T Consensus 974 Lr~LV~~lce~~ 985 (1139)
T 4fhn_B 974 LLDFVNQLTKQG 985 (1139)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhCC
Confidence 444444444333
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.36 E-value=2.9 Score=43.25 Aligned_cols=127 Identities=8% Similarity=-0.008 Sum_probs=81.6
Q ss_pred HHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC-hHHHHHHHHhhhhC--------CCCh----
Q 043142 76 FPFALKACSALSA-IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC-VVNARQVFDKILER--------DPSE---- 141 (512)
Q Consensus 76 ~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~--------~pd~---- 141 (512)
...+++.+...++ .+.|..+++.+.+.....+.....+++....+.++ --+|.++..+..+. .+..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3445566666666 57899999998887522233333445555444442 23455555444321 1111
Q ss_pred -------hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043142 142 -------ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR 203 (512)
Q Consensus 142 -------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 203 (512)
..+..-..-|...|+++.|.++-.+.+... +.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 011122234556899999999999888763 5567899999999999999999999999886
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.30 E-value=2.4 Score=34.30 Aligned_cols=52 Identities=15% Similarity=0.020 Sum_probs=29.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-----CCCc-------hHHHHHHHHHHHcCChHHHHHHHHHh
Q 043142 182 LVDMYAKCGLVKVARNLFEQLR-----EKRV-------VSWNAMITGYAMHGHSTKALDLFEKM 233 (512)
Q Consensus 182 li~~y~~~g~~~~A~~~~~~m~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m 233 (512)
-+..+...|.++.|+-+.+.+. .+++ .+...+..++...+++..|...|++.
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3555666677777766655532 1221 23444556666666677776666664
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.97 E-value=14 Score=33.91 Aligned_cols=130 Identities=11% Similarity=-0.027 Sum_probs=74.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHH----HHHHHCCCCCCcchHHHHHHHHh
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY----YRLLEIGLVPDNFTFPFALKACS 84 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 84 (512)
.+.++..-|.+.+++++|++++-. -...+.+.|+...|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345555556666666666665422 223456667776665554 44455678888877777777766
Q ss_pred ccCC--hHH---HHHHHHHHHHhC--CCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHH
Q 043142 85 ALSA--IEE---GRRIHEDVIRNK--WETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISAS 151 (512)
Q Consensus 85 ~~~~--~~~---a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~ 151 (512)
.... .+. ..+...+-.+.| ..-|+.....+...|.+.+++.+|..-|- ...++...+|..++-.+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTKESPEVLARMEYEW 177 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCTTHHHHHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCCchHHHHHHHHHHH
Confidence 5543 121 122222333333 23467777888888888888888888773 22222234555544443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.77 E-value=27 Score=37.04 Aligned_cols=155 Identities=10% Similarity=0.099 Sum_probs=69.2
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHH--HHhcCCHHHHHHHHHhcCC-CC-chHHH---HHHHHHHHcCCh
Q 043142 151 SADIAALPQGRELHGFSWRHRFELNVKVKTALVDM--YAKCGLVKVARNLFEQLRE-KR-VVSWN---AMITGYAMHGHS 223 (512)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--y~~~g~~~~A~~~~~~m~~-~~-~~~~~---~li~~~~~~g~~ 223 (512)
+...|+-+....++..+.+.. +..+...++.+ +.-.|+-+.+..+.+.+.. .+ .+-|. ++.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH
Confidence 345555555566665555431 22222222222 2345565555555555442 22 22232 233345556665
Q ss_pred HHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCh-HHHHHHHHh
Q 043142 224 TKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRL-DEACDLIMQ 302 (512)
Q Consensus 224 ~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~ 302 (512)
....++++.+......+......+.-++...|+.+.+.++++.+.+. -.|.+..-..+.-+....|.. .+|.+.+..
T Consensus 577 ~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 54445666665442233333333333443445555555555544321 234444444444444434332 455666666
Q ss_pred CCCCCCHh
Q 043142 303 MRVKPDPG 310 (512)
Q Consensus 303 m~~~p~~~ 310 (512)
+...+|..
T Consensus 655 L~~D~d~~ 662 (963)
T 4ady_A 655 LTKDPVDF 662 (963)
T ss_dssp HHTCSSHH
T ss_pred HccCCCHH
Confidence 53334444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.46 E-value=3.1 Score=39.48 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hcCCCCChhH
Q 043142 211 NAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVR----DYHIDPSVQH 279 (512)
Q Consensus 211 ~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 279 (512)
..++..+...|++++|+..+..+....+-+...+..++.++...|+..+|...|+...+ +.|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 33555666677777777777777666666666777777777777777777777666532 3466665543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.43 E-value=2.7 Score=30.62 Aligned_cols=60 Identities=23% Similarity=0.214 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 56 VAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 56 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++-+...- .+...+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 555666666667778888888888888888888888888887765443 333445665553
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.07 E-value=15 Score=35.45 Aligned_cols=179 Identities=12% Similarity=0.118 Sum_probs=115.0
Q ss_pred CCHHHHHHHHHhcC-----CCC----chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHH----hcCCC
Q 043142 190 GLVKVARNLFEQLR-----EKR----VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSAC----SRGGL 256 (512)
Q Consensus 190 g~~~~A~~~~~~m~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~----~~~g~ 256 (512)
|+++.|.+.+..+. ..| ......++..+...|+++...+.+.-+......-......++..+ .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 77888888775543 223 245677888999999999988877766543221122223344333 22332
Q ss_pred HHH--HHHHHHHHHHhcCCCC--------ChhHHHHHHHHHhccCChHHHHHHHHhCC-----CCCC---HhHHHHHHHH
Q 043142 257 FDE--GRMFFESMVRDYHIDP--------SVQHYTCMVDLLGHSGRLDEACDLIMQMR-----VKPD---PGVWGALLNS 318 (512)
Q Consensus 257 ~~~--a~~~~~~~~~~~~~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~---~~~~~~ll~~ 318 (512)
.+. -..+.+... .+.. .......|...|...|++.+|.+++..+. ..+. ...+..-++.
T Consensus 110 ~d~~~~~~~i~~l~---~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 110 LDLNTRISVIETIR---VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp THHHHHHHHHHCCS---SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 222 222222111 1111 12344678899999999999999998872 1111 2366777888
Q ss_pred HHHcCCHHHHHHHHHHHHh---cCCCC----CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 319 CKLHGHVKLAELALEKLIE---LEPHD----AGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~---~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
|...+|+..|..+++++.. ..++. ...|...+..+...++|.+|.+.|.+..+
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999999999999753 12322 24667888889999999999988877754
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.60 E-value=9 Score=33.74 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=31.6
Q ss_pred HHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 217 YAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 217 ~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
..+.|..++|++....-.+..+.|...-..++.-+|-.|++++|.+-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455666666666666666655555555556666666666666666666554
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=86.32 E-value=19 Score=36.65 Aligned_cols=41 Identities=15% Similarity=0.116 Sum_probs=25.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHh
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAW 50 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 50 (512)
+| ++|-.+.|||.+++|.++.++... .-...+-..+..|+.
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 44 467788899999999998877642 111345555666653
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.93 E-value=5.3 Score=29.12 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=46.8
Q ss_pred hHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 043142 223 STKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVD 285 (512)
Q Consensus 223 ~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 285 (512)
.-+..+-++.+-.... |++....+.+.||.+.+++..|.++|+.+..+.| +....|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 4456666666666667 9999999999999999999999999999976543 33456777664
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.76 E-value=11 Score=29.50 Aligned_cols=48 Identities=6% Similarity=0.039 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 325 VKLAELALEKLIELEPHD-AGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 325 ~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
..+++.+++.+...+|.. ......|+-++.+.|++++|+++.+.+.+.
T Consensus 58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 445666666666655532 234445666667777777777776666553
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=85.30 E-value=34 Score=34.56 Aligned_cols=287 Identities=9% Similarity=-0.039 Sum_probs=131.6
Q ss_pred ccCChHHHHHHHccCCCCCch---HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCChHHHHH
Q 043142 19 ACDCLHNAHQLFDRIPQRNLF---LWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN-FTFPFALKACSALSAIEEGRR 94 (512)
Q Consensus 19 ~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~ 94 (512)
+.|+++.+.++-..+..--.. .|..+...+ ....+.+....+.+ ..-.|-. ..-...+..+++.+++.....
T Consensus 18 ~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~---~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~ 93 (618)
T 1qsa_A 18 DNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRA---NPTLPPARTLQSRFVNELARREDWRGLLA 93 (618)
T ss_dssp HTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHH---CCCChhHHHHHHHHHHHHHhCCCHHHHHH
Confidence 468888888887776432222 333332222 11233444444333 2111111 112333455666677666555
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC-CChhHHHHHHHHHhccCChHH--HHHHHHHHHHcC
Q 043142 95 IHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD-PSEATLVTVISASADIAALPQ--GRELHGFSWRHR 171 (512)
Q Consensus 95 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-pd~~t~~~ll~~~~~~~~~~~--a~~~~~~~~~~g 171 (512)
.+.. .+.+...--....+....|+-++|......+=..+ ..+.....++....+.|.+.. ..+-+..+
T Consensus 94 ~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~a---- 164 (618)
T 1qsa_A 94 FSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLA---- 164 (618)
T ss_dssp HCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHH----
T ss_pred hccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHH----
Confidence 4332 24455555556677777888766666555542222 233445555555554443322 11222222
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---------------------------CCCch---HHHHHHHHHHHcC
Q 043142 172 FELNVKVKTALVDMYAKCGLVKVARNLFEQLR---------------------------EKRVV---SWNAMITGYAMHG 221 (512)
Q Consensus 172 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---------------------------~~~~~---~~~~li~~~~~~g 221 (512)
...|+...|..+...+. .++.. .+..-+.-+.+ .
T Consensus 165 ---------------l~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 165 ---------------MKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp ---------------HHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-H
T ss_pred ---------------HHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-c
Confidence 22333333333332221 11110 01111222233 3
Q ss_pred ChHHHHHHHHHhHHCCCCCHHH----HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHH
Q 043142 222 HSTKALDLFEKMKDEVQPDHIT----FVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEAC 297 (512)
Q Consensus 222 ~~~~A~~~~~~m~~~~~p~~~t----~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 297 (512)
+++.|...|.........+... ...+.......+...++...+...... .++.....-.+..-.+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 5677777777765443322221 122222333344244455555544322 233333333444445667888888
Q ss_pred HHHHhCCCCC-C-HhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 043142 298 DLIMQMRVKP-D-PGVWGALLNSCKLHGHVKLAELALEKLIE 337 (512)
Q Consensus 298 ~~~~~m~~~p-~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 337 (512)
..|+.|+..+ + ..-.--+..+....|+.++|..+|+++.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888775322 1 11112234455667788888887777764
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=82.98 E-value=32 Score=32.43 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=29.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 246 GVLSACSRGGLFDEGRMFFESMVRDYHIDPS----VQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 246 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
.++..|...|++.+|..++..+.++..-..| ..+|..-+.+|...+++.++...+.+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4555556666666666665555443221111 234444555566666666666555444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=82.96 E-value=6.7 Score=30.33 Aligned_cols=74 Identities=12% Similarity=-0.060 Sum_probs=49.8
Q ss_pred CCCCCcchHHHHHHHHhccCC---hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh
Q 043142 68 GLVPDNFTFPFALKACSALSA---IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE 141 (512)
Q Consensus 68 g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~ 141 (512)
+-.|+..|--....++.+..+ ..++..+++.+.+.+........--|.-++.|.|++++|++..+.+.+..|+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 344555554455556665554 45688888888877622233444456677889999999999999988888764
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.12 E-value=15 Score=29.64 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhhhhCC
Q 043142 108 VFVGAALIDMYAKCSCVVNARQVFDKILERD 138 (512)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 138 (512)
..+---+..+|.+.+++++|+.+++.++.+.
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 3444557778888899999998888876543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.88 E-value=13 Score=28.75 Aligned_cols=46 Identities=7% Similarity=0.050 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCCC-CCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 326 KLAELALEKLIELEPH-DAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 326 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
.+++.+++.+.+.+|. .......|+-++.+.|++++|++..+.+.+
T Consensus 60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455555555554442 223444455555555555555555555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.86 E-value=41 Score=32.32 Aligned_cols=180 Identities=9% Similarity=0.083 Sum_probs=111.9
Q ss_pred CChHHHHHHHHhhhhC---C----CChhHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCCchHHHHHHH----HHHHhc
Q 043142 122 SCVVNARQVFDKILER---D----PSEATLVTVISASADIAALPQGRELHGFSWRH-RFELNVKVKTALV----DMYAKC 189 (512)
Q Consensus 122 g~~~~A~~~~~~m~~~---~----pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li----~~y~~~ 189 (512)
|+++.|++.+-.+.+. . ........++..|...++++...+.+..+.+. |.... ....++ ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 6788888877666532 1 23445778888999999999887777665543 32222 222333 333333
Q ss_pred CCHH--HHHHHHHhcCC---CCc-------hHHHHHHHHHHHcCChHHHHHHHHHhHHC--CCCC----HHHHHHHHHHH
Q 043142 190 GLVK--VARNLFEQLRE---KRV-------VSWNAMITGYAMHGHSTKALDLFEKMKDE--VQPD----HITFVGVLSAC 251 (512)
Q Consensus 190 g~~~--~A~~~~~~m~~---~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p~----~~t~~~ll~a~ 251 (512)
...+ .-..+.+.... .-+ .....|...|...|++.+|..++.++... +.-+ ...+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3322 23333333321 111 12345677888999999999999998643 2222 23466677788
Q ss_pred hcCCCHHHHHHHHHHHHHhc-CCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 252 SRGGLFDEGRMFFESMVRDY-HIDPS----VQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
...+++.+|..++.++.... ...++ ...|..++..+...+++.+|...|.+.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 89999999999998874211 11222 346677788888888888887776554
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.15 E-value=7.2 Score=30.13 Aligned_cols=42 Identities=31% Similarity=0.363 Sum_probs=21.5
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 59 ELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVI 100 (512)
Q Consensus 59 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 100 (512)
+-++.+...++.|++......|++|.+.+|+..|.++++-+.
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 512 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.004 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 7e-07
Identities = 35/370 (9%), Positives = 93/370 (25%), Gaps = 42/370 (11%)
Query: 26 AHQLFDRIPQR---NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKA 82
A + ++ ++ N + +L + + + ++ P L
Sbjct: 18 AERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGN 75
Query: 83 CSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA 142
+ H + L + A Q + L+ +P
Sbjct: 76 VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY 135
Query: 143 TLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFE-- 200
+ + + + + + L ++ G + +A + FE
Sbjct: 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195
Query: 201 -QLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDE 259
L + ++ + +A+ + + + + GL D
Sbjct: 196 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255
Query: 260 GRMFFESMVR--------------------------------DYHIDPSVQHYTCMVDLL 287
+ + + ++
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315
Query: 288 GHSGRLDEACDLIMQ-MRVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGN 345
G ++EA L + + V P+ L + + G ++ A + ++ I + P A
Sbjct: 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375
Query: 346 YVILSNIYAR 355
Y + N
Sbjct: 376 YSNMGNTLKE 385
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.004
Identities = 34/263 (12%), Positives = 71/263 (26%), Gaps = 9/263 (3%)
Query: 127 ARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMY 186
+ ++++P A + + Q H + L
Sbjct: 52 SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111
Query: 187 AKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEV--QPDHITF 244
G ++ A + + + + + + + QP+
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Query: 245 VGVLSACSRG-GLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRLDEACDLIMQ 302
L G FE V +DP+ + Y + ++L + D A ++
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228
Query: 303 MR--VKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWE 360
V G L G + LA + IEL+PH Y L+N +
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288
Query: 361 GVAKLRKLMIDRGIKKSIACSWI 383
+ + + + +
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNL 311
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 512 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.64 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.21 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.19 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.17 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.16 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.16 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.13 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.11 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.08 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.03 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.02 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.71 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.68 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.59 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.59 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.52 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.51 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.5 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.47 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.44 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.43 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.3 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.29 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.28 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.27 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.11 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.09 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.05 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.03 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.02 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.0 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.96 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.93 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.89 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.87 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.86 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.84 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.84 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.74 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.74 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.66 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.65 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.57 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.55 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.52 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.48 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.41 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.37 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.1 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.09 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.58 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.1 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.1 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.11 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.39 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.43 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.35 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.23 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 89.51 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.32 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.82 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.3e-20 Score=180.93 Aligned_cols=353 Identities=12% Similarity=0.037 Sum_probs=284.7
Q ss_pred HHHHHHccCChHHHHHHHccCCC--C-CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHhccCC
Q 043142 13 LVHLYSACDCLHNAHQLFDRIPQ--R-NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD-NFTFPFALKACSALSA 88 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~ 88 (512)
|...+-+.|++++|++.|+++.+ | ++..|..+...|.+.|++++|+..|++..+.. |+ ..++..+...+...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhhcc
Confidence 45567788999999999988742 3 67889999999999999999999999998753 44 4578888899999999
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC-CChhHHHHHHHHHhccCChHHHHHHHHHH
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD-PSEATLVTVISASADIAALPQGRELHGFS 167 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-pd~~t~~~ll~~~~~~~~~~~a~~~~~~~ 167 (512)
+++|.+.+....+.. +.+..........+...+....+........... ................+....+...+...
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHh
Confidence 999999999998876 4455555555566666666666666555554443 34445555566667777778888777777
Q ss_pred HHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHH
Q 043142 168 WRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITF 244 (512)
Q Consensus 168 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~ 244 (512)
.... +.+...+..+...+...|++++|...++...+ .+...|..+...+...|++++|+..+++.....+.+...+
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 240 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHH
Confidence 6654 44567788888899999999999999987653 3457888888999999999999999999988777777888
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-C-CCCCHhHHHHHHHHHHH
Q 043142 245 VGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-R-VKPDPGVWGALLNSCKL 321 (512)
Q Consensus 245 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~ 321 (512)
..+...+.+.|++++|...|++.++ +.| +...+..+...|...|++++|++.++.. . ...+...+..+...+..
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence 8888999999999999999998874 356 5778888999999999999999999877 2 33456688888889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 322 HGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 322 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
.|++++|+..++++++..|+++.++..++.+|.+.|++++|...+++..+.
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999988754
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=3.7e-20 Score=177.64 Aligned_cols=348 Identities=13% Similarity=0.104 Sum_probs=290.9
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 043142 6 HPVLATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKA 82 (512)
Q Consensus 6 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 82 (512)
++.++..+...|.+.|++++|+..|++..+ .+..+|..+...|.+.|++++|+..+......... +..........
T Consensus 32 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 110 (388)
T d1w3ba_ 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAA 110 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccc-ccccccccccc
Confidence 577889999999999999999999998642 36789999999999999999999999999875422 33344444444
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHH
Q 043142 83 CSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGR 161 (512)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~ 161 (512)
.........+........... .................+....+...+.......|+. ..+..+...+...|+++.|.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 189 (388)
T d1w3ba_ 111 LVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp HHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred ccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHH
Confidence 555566666666665555554 4455566667777888899999999999988887755 56777778889999999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC
Q 043142 162 ELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ 238 (512)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 238 (512)
..+...++.. +.+..++..+...|...|++++|...|+.... .+...|..+...+.+.|++++|+..|++..+..+
T Consensus 190 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 268 (388)
T d1w3ba_ 190 HHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 9999988864 44677889999999999999999999988653 4467788899999999999999999999998877
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHH
Q 043142 239 PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALL 316 (512)
Q Consensus 239 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll 316 (512)
.+..++..+..++...|++++|...++..... .+.+...+..+...+.+.|++++|++.+++. ...|+ ..+|..+.
T Consensus 269 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 346 (388)
T d1w3ba_ 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 77888999999999999999999999998754 2447788999999999999999999999986 56665 45888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAAN 358 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 358 (512)
..+...|++++|...|+++++++|.++.+|..|+.+|.+.|+
T Consensus 347 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999988775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2e-14 Score=134.12 Aligned_cols=263 Identities=12% Similarity=0.046 Sum_probs=163.6
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChH
Q 043142 80 LKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALP 158 (512)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~ 158 (512)
...+.+.|++++|...|+.+++.. |.+..+|..+...|...|++++|...|++..+.+|+. ..+..+...+...|+++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 104 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 344555666666666666666553 3345556666666666666666666666665555532 33444444445555555
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC
Q 043142 159 QGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ 238 (512)
Q Consensus 159 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 238 (512)
+|.+.+..+....... .......... . ...+.......+..+...+...+|.+.|.+.....+
T Consensus 105 ~A~~~~~~~~~~~~~~-~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p 167 (323)
T d1fcha_ 105 QACEILRDWLRYTPAY-AHLVTPAEEG-A---------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP 167 (323)
T ss_dssp HHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred ccccchhhHHHhccch-HHHHHhhhhh-h---------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 5555555444432110 0000000000 0 000001111122334455667888888888876655
Q ss_pred --CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHH
Q 043142 239 --PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWG 313 (512)
Q Consensus 239 --p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~ 313 (512)
++...+..+...+...|++++|...|+..... .| +...|..+...|.+.|++++|.+.+++. ...|+ ..+|.
T Consensus 168 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 244 (323)
T d1fcha_ 168 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 244 (323)
T ss_dssp TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHH
Confidence 67778888888999999999999999998754 45 5778889999999999999999999887 44554 55899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch-----------HHHHHHHHHhccChhHHH
Q 043142 314 ALLNSCKLHGHVKLAELALEKLIELEPHDAGN-----------YVILSNIYARAANWEGVA 363 (512)
Q Consensus 314 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~a~ 363 (512)
.+..+|...|++++|+..|++++++.|.+... |..+..++...|+.+.+.
T Consensus 245 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 245 NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999988776443 344555566666665443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.1e-13 Score=127.04 Aligned_cols=240 Identities=15% Similarity=0.047 Sum_probs=176.5
Q ss_pred HHHHHHHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 043142 113 ALIDMYAKCSCVVNARQVFDKILERDPS-EATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGL 191 (512)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 191 (512)
.....+.+.|++++|++.|+++.+.+|+ ..+|..+..++...|+++.|...+..+++.. +.+...+..+...|.+.|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 4566788899999999999999998885 4567777778888888888888888887764 3456677777778888888
Q ss_pred HHHHHHHHHhcCCCCch---HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 192 VKVARNLFEQLREKRVV---SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 192 ~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
+++|.+.++.....+.. .+......... .+.......+..+...+.+.++...|...+
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhh-------------------cccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 88888777765432210 00000000000 000011111222334456778888888887
Q ss_pred HhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 043142 269 RDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNY 346 (512)
Q Consensus 269 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 346 (512)
+...-.++...+..+...+...|++++|+..+++. ...|+ ...|..+...+...|++++|.+.++++++.+|.++.++
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 55333346778888999999999999999999987 34454 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 347 VILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 347 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
..++.+|.+.|++++|.+.|++..+.
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999988764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=2.6e-09 Score=99.44 Aligned_cols=194 Identities=12% Similarity=0.072 Sum_probs=129.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC----chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-----CCH
Q 043142 178 VKTALVDMYAKCGLVKVARNLFEQLRE-------KR----VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-----PDH 241 (512)
Q Consensus 178 ~~~~li~~y~~~g~~~~A~~~~~~m~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----p~~ 241 (512)
.+..+...|...|++..|...+..... +. ...+..+...+...|+++.+...+.+...... ...
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 172 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence 344455666667777776666654321 11 12445566677778888888888777654322 233
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-----ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-----CHh
Q 043142 242 ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-----SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-----DPG 310 (512)
Q Consensus 242 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~ 310 (512)
.++......+...+....+...+........-.. ....+..+...+...|+.++|...+++. ...| ...
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 252 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 252 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence 4455556666777888888777766544322111 1234556677788889999999988876 2111 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIEL------EPHDAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
.+..+...+...|++++|...+++++.. .|....++..+..+|...|++++|.+.+++..+
T Consensus 253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666778889999999999999988743 244556788899999999999999999987654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=5.7e-10 Score=99.54 Aligned_cols=201 Identities=11% Similarity=-0.022 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 043142 109 FVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAK 188 (512)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 188 (512)
.++..+...|.+.|++++|+..|++..+.+|+ +..+++.+..+|.+
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~----------------------------------~~~a~~~lg~~~~~ 83 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPD----------------------------------MPEVFNYLGIYLTQ 83 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC----------------------------------CHHHHhhhchHHHH
Confidence 35566677777788888888888777776654 33445555555555
Q ss_pred cCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 043142 189 CGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFE 265 (512)
Q Consensus 189 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 265 (512)
.|++++|...|+++.+ .+..+|..+...|...|++++|+..|++..+..+.+......+..++.+.+..+....+..
T Consensus 84 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (259)
T d1xnfa_ 84 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 163 (259)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 5555555555555442 1234555666666666666677776666665555444444444444444454444444444
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhccCC----hHHHHHHHHhC-CCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 043142 266 SMVRDYHIDPSVQHYTCMVDLLGHSGR----LDEACDLIMQM-RVKPDP-GVWGALLNSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 266 ~~~~~~~~~p~~~~~~~li~~~~~~g~----~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
.... ..+....++ ++..+..... .+.+...+... ...|+. .+|..+...+...|++++|...|+++++.+
T Consensus 164 ~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 164 HFEK---SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHH---SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred Hhhc---cchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 4422 122222222 2222221111 22222211111 112332 367778888999999999999999999999
Q ss_pred CCCCchHH
Q 043142 340 PHDAGNYV 347 (512)
Q Consensus 340 p~~~~~~~ 347 (512)
|++...|.
T Consensus 240 p~~~~~~~ 247 (259)
T d1xnfa_ 240 VHNFVEHR 247 (259)
T ss_dssp CTTCHHHH
T ss_pred CCCHHHHH
Confidence 98765544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=5.9e-09 Score=96.99 Aligned_cols=289 Identities=8% Similarity=-0.027 Sum_probs=160.2
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCCc------chHHHHHHHHhccCChHHHHHHHHHHHHhCCC-C----ChhHHHH
Q 043142 45 IRAYAWNGPYEVAIELYYRLLEIGLVPDN------FTFPFALKACSALSAIEEGRRIHEDVIRNKWE-T----DVFVGAA 113 (512)
Q Consensus 45 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~----~~~~~~~ 113 (512)
...+...|++++|+++|++..... |+. ..+..+..++...|++++|.+.+...++.... + ....+..
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 344556677777777777766532 221 13444455566666666666666665543210 1 1223344
Q ss_pred HHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCC---CchHHHHHHHHHHHhcC
Q 043142 114 LIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFE---LNVKVKTALVDMYAKCG 190 (512)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~li~~y~~~g 190 (512)
+...|...|++..|...+.+..... ...+.. .....+..+...|...|
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~-----------------------------~~~~~~~~~~~~~~~~~la~~~~~~~ 147 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLI-----------------------------NEQHLEQLPMHEFLVRIRAQLLWAWA 147 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------HHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------HhcccchhhHHHHHHHHHHHHHHHhc
Confidence 4455556666666665555443210 001111 11223445556666777
Q ss_pred CHHHHHHHHHhcCC----C----CchHHHHHHHHHHHcCChHHHHHHHHHhHHC----CC-C--CHHHHHHHHHHHhcCC
Q 043142 191 LVKVARNLFEQLRE----K----RVVSWNAMITGYAMHGHSTKALDLFEKMKDE----VQ-P--DHITFVGVLSACSRGG 255 (512)
Q Consensus 191 ~~~~A~~~~~~m~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-p--~~~t~~~ll~a~~~~g 255 (512)
+++.|...+..... . ...++..+...+...+...++...+.+.... +. + ....+..+...+...|
T Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 227 (366)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence 77777766665431 1 1234445555666677777777766665432 11 1 1223445555667778
Q ss_pred CHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCChHHHHHHHHhC-------CCCCCH-hHHHHHHHHHHHcCCH
Q 043142 256 LFDEGRMFFESMVRDYHIDP--SVQHYTCMVDLLGHSGRLDEACDLIMQM-------RVKPDP-GVWGALLNSCKLHGHV 325 (512)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~-~~~~~ll~~~~~~g~~ 325 (512)
++++|...+....+...-.+ ....+..+...+...|++++|...+++. +..|+. ..+..+...+...|++
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 307 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence 88888888776643211111 1234555677788888888888877765 233333 3677777888889999
Q ss_pred HHHHHHHHHHHhcCCC--C-------CchHHHHHHHHHhccChhHHHH
Q 043142 326 KLAELALEKLIELEPH--D-------AGNYVILSNIYARAANWEGVAK 364 (512)
Q Consensus 326 ~~A~~~~~~~~~~~p~--~-------~~~~~~l~~~~~~~g~~~~a~~ 364 (512)
++|.+.+++++++.+. . ......++..+...++.+++.+
T Consensus 308 ~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 308 SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 9999999888775422 1 1223334455556666666544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=4.1e-09 Score=96.81 Aligned_cols=200 Identities=9% Similarity=0.015 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNF-TFPFALKACSALS-AIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
..|+.+...+.+.+.+++|+++++++++. .|+.. .|+....++...+ ++++|...++.+++.. +-+..+|+.+..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 45666666677777888888888887774 45543 5566666666654 4777777777777765 456777777777
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 043142 117 MYAKCSCVVNARQVFDKILERDPS-EATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVA 195 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 195 (512)
.+.+.|++++|+..|+++.+.+|+ ...|..+...+...|++++|.+.+..+++.. +.+...|+.+...+.+.+...
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~-- 197 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN-- 197 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC--
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccc--
Confidence 777777777788777777777764 3456666666666666666666666666553 233444444444433333210
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 196 RNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 196 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
..+..++|++.+.+..+..+.+...+..+...+...+ .+++...++...
T Consensus 198 -----------------------~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~ 246 (315)
T d2h6fa1 198 -----------------------DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLL 246 (315)
T ss_dssp -----------------------SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHH
T ss_pred -----------------------hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHH
Confidence 0112345555555555554445555544444443332 344555555443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.6e-09 Score=99.53 Aligned_cols=212 Identities=10% Similarity=0.130 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh-HHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 043142 108 VFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA-TLVTVISASADIA-ALPQGRELHGFSWRHRFELNVKVKTALVDM 185 (512)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 185 (512)
..+++.+...+.+.+..++|+++++++.+.+|+.. .|+....++...+ ++++|...++.+++.. +-+.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~--------- 112 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNY--------- 112 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCH---------
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-Hhhh---------
Confidence 34566666778888888889988888888887544 3444444444433 2455555555544432 2233
Q ss_pred HHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 043142 186 YAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFE 265 (512)
Q Consensus 186 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 265 (512)
.+|+.+...+...|++++|++.++++.+..+.+...|..+...+.+.|++++|...++
T Consensus 113 ----------------------~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~ 170 (315)
T d2h6fa1 113 ----------------------QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVD 170 (315)
T ss_dssp ----------------------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred ----------------------hHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4444444445555555555555555554444445555555555555555555555555
Q ss_pred HHHHhcCCCC-ChhHHHHHHHHHhccCC------hHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043142 266 SMVRDYHIDP-SVQHYTCMVDLLGHSGR------LDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLI 336 (512)
Q Consensus 266 ~~~~~~~~~p-~~~~~~~li~~~~~~g~------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 336 (512)
.+++. .| +...|+.+...+.+.+. +++|++.+.+. ...| +...|..+...+. ....+++.+.++++.
T Consensus 171 ~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~ 246 (315)
T d2h6fa1 171 QLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLL 246 (315)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHH
T ss_pred HHHHH---CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHH
Confidence 55432 33 33444444333333332 44555555444 3334 3445555544433 334566667777777
Q ss_pred hcCCCCCc--hHHHHHHHHHh
Q 043142 337 ELEPHDAG--NYVILSNIYAR 355 (512)
Q Consensus 337 ~~~p~~~~--~~~~l~~~~~~ 355 (512)
++.|.... .+..++..|..
T Consensus 247 ~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 247 DLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHTTTCCCHHHHHHHHHHHHH
T ss_pred HhCCCcCCHHHHHHHHHHHHH
Confidence 66655333 33445555543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=4.3e-10 Score=104.71 Aligned_cols=227 Identities=9% Similarity=-0.049 Sum_probs=156.5
Q ss_pred CCChHHHHHHHHhhhhCCCChh-HHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCchHHH-HHHHHHHHhcCCHHHHH
Q 043142 121 CSCVVNARQVFDKILERDPSEA-TLVTVISASADIA--ALPQGRELHGFSWRHRFELNVKVK-TALVDMYAKCGLVKVAR 196 (512)
Q Consensus 121 ~g~~~~A~~~~~~m~~~~pd~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~ 196 (512)
.|++++|+..|+...+.+|+.. .|.....++...+ +.+++...+..+++... .+...+ ..+...+...|..++|.
T Consensus 86 ~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 86 AALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHH
Confidence 3446667777777766666443 4444444444443 46677777777766542 234433 34556777789999999
Q ss_pred HHHHhcCCCC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 043142 197 NLFEQLREKR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHI 273 (512)
Q Consensus 197 ~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 273 (512)
..++.+.+.+ ..+|+.+...+.+.|++++|...+++..... |+. ..+...+...+..+++...+...... -
T Consensus 165 ~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~--~ 238 (334)
T d1dcea1 165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL-LKE---LELVQNAFFTDPNDQSAWFYHRWLLG--R 238 (334)
T ss_dssp HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH-HHH---HHHHHHHHHHCSSCSHHHHHHHHHHS--C
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH-HHH---HHHHHHHHHhcchhHHHHHHHHHHHh--C
Confidence 9998887644 5778888888999998888776665544321 211 12233344556667777777777543 2
Q ss_pred CCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 043142 274 DPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDP-GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSN 351 (512)
Q Consensus 274 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 351 (512)
.++...+..+...+...|+.++|...+.+. ...|+. .+|..+...+...|++++|.+.++++++++|.+...|..|..
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~ 318 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 318 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 335566677778888889999999988876 455544 488888899999999999999999999999988888887766
Q ss_pred HHH
Q 043142 352 IYA 354 (512)
Q Consensus 352 ~~~ 354 (512)
.+.
T Consensus 319 ~~~ 321 (334)
T d1dcea1 319 KFL 321 (334)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=9.2e-09 Score=94.19 Aligned_cols=186 Identities=10% Similarity=0.078 Sum_probs=139.8
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---C-chHHHHHHHHHHHcCChHHHHHHHH
Q 043142 156 ALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---R-VVSWNAMITGYAMHGHSTKALDLFE 231 (512)
Q Consensus 156 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~-~~~~~~li~~~~~~g~~~~A~~~~~ 231 (512)
..+++..+++..++...+.+...+...+..+.+.|+++.|..+|+.+.+. + ...|...+....+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34667777887777655666778888888888999999999999887542 2 2468888888888899999999999
Q ss_pred HhHHCCCCCHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC----CCC
Q 043142 232 KMKDEVQPDHITFVGVLSA-CSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM----RVK 306 (512)
Q Consensus 232 ~m~~~~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~ 306 (512)
++.+..+.+...|...... +...|+.+.|..+|+.+.+.. ..+...+...++.+.+.|+.+.|..+|++. +..
T Consensus 159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 9888777444444444332 345688899999999887652 235678888888888899999999888876 233
Q ss_pred CC--HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 307 PD--PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 307 p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
|+ ...|...+.--..+|+.+.+..+++++.+..|...
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 33 34788888877888999999888888888776543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=1.5e-08 Score=92.75 Aligned_cols=181 Identities=14% Similarity=0.074 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh--hHHHHHHHHHhccCChHHHHHHHHH
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE--ATLVTVISASADIAALPQGRELHGF 166 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~ 166 (512)
.+++..+++..++...+.+...|...+..+.+.|+++.|..+|+++.+..|.. ..|...+..+.+.++.+.|+++|..
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 45666777776665445556667777777777777777777777776665532 2455555666666666666666666
Q ss_pred HHHcCCCCchHHHHHHHHH-HHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CC
Q 043142 167 SWRHRFELNVKVKTALVDM-YAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PD 240 (512)
Q Consensus 167 ~~~~g~~~~~~~~~~li~~-y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~ 240 (512)
+++.+. .+...+...... +...|+.+.|..+|+.+.+ .+...|...+..+.+.|+.+.|..+|++.....+ |+
T Consensus 160 al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 160 AREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 655432 222222222222 2223555555555555442 1234455555555555555555555555444332 21
Q ss_pred --HHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 043142 241 --HITFVGVLSACSRGGLFDEGRMFFESMVRD 270 (512)
Q Consensus 241 --~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 270 (512)
...|...+.--...|+.+.+..+++++.+.
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 123444444334445555555555555433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=2.2e-09 Score=95.67 Aligned_cols=195 Identities=14% Similarity=0.080 Sum_probs=141.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHh
Q 043142 176 VKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACS 252 (512)
Q Consensus 176 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~ 252 (512)
..++..+..+|.+.|++++|...|++..+ .++.+|+.+..+|.+.|++++|+..|++..+..+.+..++..+..++.
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH
Confidence 34667788999999999999999998763 457899999999999999999999999999887767778889999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCHhHHHHHHHHHHH----cCCHH
Q 043142 253 RGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQMR-VKPDPGVWGALLNSCKL----HGHVK 326 (512)
Q Consensus 253 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~----~g~~~ 326 (512)
..|++++|...|+..++. .| +......+...+.+.+..+.+..+..... ..++...++. +..+.. .+..+
T Consensus 117 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHHH
Confidence 999999999999999865 45 44444444455555565555544444331 2222222322 222221 22234
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 327 LAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 327 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
.+...+.......|....+|..+...|...|++++|.+.|++.....+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 444444444445566667888899999999999999999999876543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=7.6e-10 Score=102.95 Aligned_cols=255 Identities=7% Similarity=-0.101 Sum_probs=184.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHhhhhCCCChhH-HHH---HHHHHhc-------cCChHHHHHHHHHHHHcCCCCchHHHH
Q 043142 112 AALIDMYAKCSCVVNARQVFDKILERDPSEAT-LVT---VISASAD-------IAALPQGRELHGFSWRHRFELNVKVKT 180 (512)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t-~~~---ll~~~~~-------~~~~~~a~~~~~~~~~~g~~~~~~~~~ 180 (512)
..++....+.+..++|+.+++++.+.+|+..+ |+. ++..... .+.++++...++.+++.. +.+...+.
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~ 111 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 33444444444457888888888888887654 322 2222222 344677888888888764 45666777
Q ss_pred HHHHHHHhcC--CHHHHHHHHHhcCC---CCchHHHH-HHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcC
Q 043142 181 ALVDMYAKCG--LVKVARNLFEQLRE---KRVVSWNA-MITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRG 254 (512)
Q Consensus 181 ~li~~y~~~g--~~~~A~~~~~~m~~---~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~ 254 (512)
.+..++...+ ++++|...++.+.+ ++...|.. ....+...+.+++|+..+++.....+-+...|..+...+...
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~ 191 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 7776666655 58999999998753 34555554 446777789999999999999988888888899999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCC-CCHhHHHHHHHHHHHcCCHHHHHHHH
Q 043142 255 GLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK-PDPGVWGALLNSCKLHGHVKLAELAL 332 (512)
Q Consensus 255 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~ 332 (512)
|++++|...+....+. .|+ ...+...+...+..+++...+... ... ++...+..+...+...++.++|...+
T Consensus 192 ~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 265 (334)
T d1dcea1 192 HPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKEL 265 (334)
T ss_dssp SCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 9888876665554322 221 112333455566777777776655 222 34446677777888889999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 333 EKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 333 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
.+..+.+|.+..++..++.+|...|++++|.+.+++..+.+
T Consensus 266 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 266 QELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred HHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999987754
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=1.7e-07 Score=84.65 Aligned_cols=160 Identities=14% Similarity=0.011 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHC----CC--CCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcCCC---C-Ch
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDE----VQ--PDHITFVGVLSACS-RGGLFDEGRMFFESMVRDYHID---P-SV 277 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--p~~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~---p-~~ 277 (512)
+|+.+...|.+.|++++|++.+++.... +. ....++..+...|. ..|++++|...++...+-.... + -.
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 4455555555566666665555554321 11 12334445555553 4577777777777664321111 1 13
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-------H-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----
Q 043142 278 QHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-------P-GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAG---- 344 (512)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~---- 344 (512)
.++..+...|.+.|++++|++.+++. ...|+ . ..+...+..+...++++.|...+++..+.+|..+.
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~ 238 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHH
Confidence 45666777788888888888888775 11111 1 12334445566788888888888888888765332
Q ss_pred -hHHHHHHHHHh--ccChhHHHHHHHH
Q 043142 345 -NYVILSNIYAR--AANWEGVAKLRKL 368 (512)
Q Consensus 345 -~~~~l~~~~~~--~g~~~~a~~~~~~ 368 (512)
....++.++.. .+++++|...|+.
T Consensus 239 ~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 239 NFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 23445555544 3456777776654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=4.3e-07 Score=76.25 Aligned_cols=141 Identities=11% Similarity=-0.050 Sum_probs=105.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHH
Q 043142 183 VDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRM 262 (512)
Q Consensus 183 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~ 262 (512)
...+...|+++.|.+.|+++..++...|..+...|...|++++|++.|++..+..+.+...|..+..++.+.|++++|..
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHH
Confidence 45567889999999999998888888888899999999999999999999988888778888889999999999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 043142 263 FFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPH 341 (512)
Q Consensus 263 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 341 (512)
.|++.+.. ..++... .|...|. ..+++ ..++..+..++...|++++|.+.++++++..|.
T Consensus 92 ~~~kAl~~--~~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 92 DLKEALIQ--LRGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHT--TTTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHh--CccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 98887642 1222100 0000000 01111 124556677788899999999999999888876
Q ss_pred C
Q 043142 342 D 342 (512)
Q Consensus 342 ~ 342 (512)
.
T Consensus 153 ~ 153 (192)
T d1hh8a_ 153 P 153 (192)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=9.9e-07 Score=73.96 Aligned_cols=129 Identities=10% Similarity=-0.050 Sum_probs=97.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHhccC
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD-NFTFPFALKACSALS 87 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~ 87 (512)
.|+. ...+...|+++.|++.|+++.+++...|..+..+|...|++++|++.|++.++.+ |+ ...|..+..++.+.|
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHhhc
Confidence 4554 5566778899999999998888888888889899999999999999999988753 43 457788888888899
Q ss_pred ChHHHHHHHHHHHHhCCCC---------------ChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC
Q 043142 88 AIEEGRRIHEDVIRNKWET---------------DVFVGAALIDMYAKCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd 140 (512)
++++|.+.|++.++..... ...++..+..+|.+.|++++|.+.|....+..|+
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9999988888877542110 0234555677788888888888888877766654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=3.4e-07 Score=69.97 Aligned_cols=103 Identities=14% Similarity=0.109 Sum_probs=69.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcC
Q 043142 247 VLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHG 323 (512)
Q Consensus 247 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 323 (512)
-...+...|++++|+..|+..++. .| +...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 345566677777777777777643 45 5666777777777777777777777666 2233 4457777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 043142 324 HVKLAELALEKLIELEPHDAGNYVILSNI 352 (512)
Q Consensus 324 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 352 (512)
++++|+..++++++.+|.++..+..+.++
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 77777777777777777777666555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.52 E-value=2.6e-07 Score=78.23 Aligned_cols=110 Identities=11% Similarity=-0.042 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHH
Q 043142 239 PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGAL 315 (512)
Q Consensus 239 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l 315 (512)
|+...+......+.+.|++++|+..|...++. .| +...|..+..+|.+.|++++|+..|++. .+.|+ ..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 44555556666777777777777777776643 45 5666777777777777777777777666 45554 3467777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 043142 316 LNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSN 351 (512)
Q Consensus 316 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 351 (512)
..++...|++++|...|+++++++|.+...+...+.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 114 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 114 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 777777777777777777777776654443333333
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.51 E-value=2.6e-07 Score=78.25 Aligned_cols=98 Identities=11% Similarity=0.002 Sum_probs=88.2
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 043142 275 PSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNI 352 (512)
Q Consensus 275 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 352 (512)
|+...+......|.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..|+++++++|.++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 66667777888999999999999999876 4445 556899999999999999999999999999999999999999999
Q ss_pred HHhccChhHHHHHHHHHHhC
Q 043142 353 YARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 353 ~~~~g~~~~a~~~~~~m~~~ 372 (512)
|.+.|++++|...|++..+.
T Consensus 82 ~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999987653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=9.6e-07 Score=71.57 Aligned_cols=117 Identities=10% Similarity=0.066 Sum_probs=91.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH-hHHHHHHHHHHHc
Q 043142 246 GVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDP-GVWGALLNSCKLH 322 (512)
Q Consensus 246 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~ 322 (512)
.....+.+.|++++|...|++.++. .| +...|..+..+|...|++++|+..|++. .+.|+. ..|..+..++...
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence 3455677888889999888888754 56 6778888888899999999999988877 445544 5899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHH--HhccChhHHHHH
Q 043142 323 GHVKLAELALEKLIELEPHDAGNYVILSNIY--ARAANWEGVAKL 365 (512)
Q Consensus 323 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 365 (512)
|++++|...++++++++|.++..+..+..+. ...+.++++...
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999888777665543 344556666554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.47 E-value=5.6e-06 Score=74.31 Aligned_cols=55 Identities=11% Similarity=-0.053 Sum_probs=31.0
Q ss_pred HHHHHHhCCChHHHHHHHHhhhhCC---CC----hhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 114 LIDMYAKCSCVVNARQVFDKILERD---PS----EATLVTVISASADIAALPQGRELHGFSW 168 (512)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~~---pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 168 (512)
..+.|...|++++|.+.|.+..+.. .+ ..+|..+...|.+.|++++|...+....
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~ 104 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh
Confidence 3556777888888888887765421 11 1244445555555555555555554433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=2.8e-06 Score=64.67 Aligned_cols=101 Identities=8% Similarity=-0.009 Sum_probs=80.1
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043142 44 LIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC 123 (512)
Q Consensus 44 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (512)
-...+.+.|++++|+..|++.++.. +-+...|..+..++...|++++|.+.+...++.. +.+...|..+..+|...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 4566778888999999998887753 2244568888888888899999999998888876 6678888888889999999
Q ss_pred hHHHHHHHHhhhhCCCChhHHHH
Q 043142 124 VVNARQVFDKILERDPSEATLVT 146 (512)
Q Consensus 124 ~~~A~~~~~~m~~~~pd~~t~~~ 146 (512)
+++|+..|++..+.+|+...+..
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~ 109 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKE 109 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999998888887654433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.43 E-value=3.4e-07 Score=69.29 Aligned_cols=89 Identities=17% Similarity=0.067 Sum_probs=79.0
Q ss_pred HHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 043142 281 TCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAAN 358 (512)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 358 (512)
..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|.++.++..++..|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34566788899999999999887 4455 456999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHH
Q 043142 359 WEGVAKLRKLM 369 (512)
Q Consensus 359 ~~~a~~~~~~m 369 (512)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=1.8e-06 Score=69.94 Aligned_cols=91 Identities=10% Similarity=0.031 Sum_probs=82.0
Q ss_pred HHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChh
Q 043142 283 MVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWE 360 (512)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 360 (512)
....|.+.|++++|+..|++. ...| +...|..+...+...|++++|...|+++++.+|.++.+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 455688999999999999988 4445 45589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 043142 361 GVAKLRKLMIDRG 373 (512)
Q Consensus 361 ~a~~~~~~m~~~g 373 (512)
+|...+++.....
T Consensus 96 eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 96 AALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 9999999987754
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=2.8e-06 Score=65.01 Aligned_cols=103 Identities=12% Similarity=-0.090 Sum_probs=77.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCh---HHHHHHHHhC-CCCCCH---hHHHHHH
Q 043142 245 VGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRL---DEACDLIMQM-RVKPDP---GVWGALL 316 (512)
Q Consensus 245 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~~~p~~---~~~~~ll 316 (512)
..+++.+...+++++|++.|+...+. .| ++.++..+..++.+.++. ++|+.+++++ ...|+. .+|..|.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 35667777788888888888888744 45 667777788888765544 4688888876 333433 2677888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPHDAGNYVILS 350 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 350 (512)
.+|...|++++|++.|+++++.+|.+..+...+.
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 9999999999999999999999999876655443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=7.7e-06 Score=66.79 Aligned_cols=132 Identities=11% Similarity=0.032 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLL 287 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 287 (512)
.+......+.+.|++++|+..|.+.....+ .... .+.-......+. ..+|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~--------------~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF--------------SNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--------------CSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcccc--------------chHHHhhhchhH--------HHHHHHHHHHH
Confidence 445556677778888888888877664322 1000 000001111111 23566678889
Q ss_pred hccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHH
Q 043142 288 GHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGV 362 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 362 (512)
.+.|++++|+..+++. .+.| ++..|..+..++...|++++|...|+++++++|.++.+...+..+..+.+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877 4456 5668999999999999999999999999999999998888888777666555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.27 E-value=0.00034 Score=61.14 Aligned_cols=180 Identities=16% Similarity=0.036 Sum_probs=101.8
Q ss_pred CCHHHHHHHHHhcCCCC-chHHHHHHHHHHH----cCChHHHHHHHHHhHHCCCCCHHHHHHHHHHH--hcCCCHHHHHH
Q 043142 190 GLVKVARNLFEQLREKR-VVSWNAMITGYAM----HGHSTKALDLFEKMKDEVQPDHITFVGVLSAC--SRGGLFDEGRM 262 (512)
Q Consensus 190 g~~~~A~~~~~~m~~~~-~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~--~~~g~~~~a~~ 262 (512)
.+...|...+.....++ ...+..+...+.. ..+.+.|...+++....+.+............ ........+..
T Consensus 52 ~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~ 131 (265)
T d1ouva_ 52 KNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVE 131 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred hhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHH
Confidence 34555555554443322 2333333333322 33456666666666655553332222222222 12344555566
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHhc----cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHH
Q 043142 263 FFESMVRDYHIDPSVQHYTCMVDLLGH----SGRLDEACDLIMQMRVKPDPGVWGALLNSCKL----HGHVKLAELALEK 334 (512)
Q Consensus 263 ~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~ 334 (512)
.+..... ..+...+..|...|.. ..+...+..+++...-..+......|...+.. ..+++.|+..|++
T Consensus 132 ~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~ 207 (265)
T d1ouva_ 132 YFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSK 207 (265)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred Hhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhh
Confidence 5555432 2345555556666554 34555666666655323355555555555554 5689999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHh----ccChhHHHHHHHHHHhCCCc
Q 043142 335 LIELEPHDAGNYVILSNIYAR----AANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 335 ~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 375 (512)
..+.+. +..+..|..+|.+ ..+.++|.+.|++..+.|..
T Consensus 208 aa~~g~--~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 208 ACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhcccC--HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 988763 4577788888875 34788999999998887754
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.11 E-value=0.001 Score=57.94 Aligned_cols=219 Identities=9% Similarity=-0.088 Sum_probs=102.1
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCChhHHHH
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSA----LSAIEEGRRIHEDVIRNKWETDVFVGAA 113 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 113 (512)
+..+..|...+-+.|++++|++.|++..+.| +...+..|...+.. ..+...+...+....+.+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4455556666666677777777777766654 33444444444443 446666666666666554 2233333
Q ss_pred HHHHHHh----CCChHHHHHHHHhhhhCCCChhHHHHHHHHHh----ccCChHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 043142 114 LIDMYAK----CSCVVNARQVFDKILERDPSEATLVTVISASA----DIAALPQGRELHGFSWRHRFELNVKVKTALVDM 185 (512)
Q Consensus 114 li~~~~~----~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 185 (512)
|...+.. ..+.+.|...++...+.++...-+ .+...+. .......+...+......+ +...+..|...
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~-~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~ 151 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCA-SLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 151 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhhhHHH-hhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhh
Confidence 4443332 345566666666655544322211 1111111 1223344444444443322 33444445555
Q ss_pred HHh----cCCHHHHHHHHHhcCCC-CchHHHHHHHHHHH----cCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhc---
Q 043142 186 YAK----CGLVKVARNLFEQLREK-RVVSWNAMITGYAM----HGHSTKALDLFEKMKDEVQPDHITFVGVLSACSR--- 253 (512)
Q Consensus 186 y~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~--- 253 (512)
|.. ..+...+...++...+. +..+...+...|.. ..+.++|+..|++..+.|.| ..+..|...+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~--~a~~~LG~~y~~G~g 229 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENG--GGCFNLGAMQYNGEG 229 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTSS
T ss_pred hccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccCH--HHHHHHHHHHHcCCC
Confidence 443 33444455554444332 33444444433333 33455555555555544432 222333333332
Q ss_pred -CCCHHHHHHHHHHHH
Q 043142 254 -GGLFDEGRMFFESMV 268 (512)
Q Consensus 254 -~g~~~~a~~~~~~~~ 268 (512)
..+.++|.++|++..
T Consensus 230 ~~~n~~~A~~~~~kAa 245 (265)
T d1ouva_ 230 VTRNEKQAIENFKKGC 245 (265)
T ss_dssp SSCCSTTHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHH
Confidence 224555555555553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.09 E-value=3e-05 Score=63.03 Aligned_cols=94 Identities=10% Similarity=0.027 Sum_probs=73.8
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 043142 278 QHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYAR 355 (512)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 355 (512)
..|+-+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...|+++++++|+++.+...+..+..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35666778889999999999999877 3344 556899999999999999999999999999999998888887777766
Q ss_pred ccChh-HHHHHHHHHHh
Q 043142 356 AANWE-GVAKLRKLMID 371 (512)
Q Consensus 356 ~g~~~-~a~~~~~~m~~ 371 (512)
.+... ...+++..|.+
T Consensus 145 ~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 145 AKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHh
Confidence 66544 34555555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.05 E-value=2e-05 Score=64.21 Aligned_cols=129 Identities=12% Similarity=0.067 Sum_probs=87.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 043142 210 WNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLG 288 (512)
Q Consensus 210 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 288 (512)
+......+...|++++|++.|.+..+.. ............ ..+.| ....+..+..+|.
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~-----------~~~~~~~~~~~~----------~~~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV-----------EGSRAAAEDADG----------AKLQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------HHHHHHSCHHHH----------GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh-----------hhhhhhhhhHHH----------HHhChhhHHHHHHHHHHHH
Confidence 4445566777788888887777654310 000000000000 01123 4556777888899
Q ss_pred ccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccCh
Q 043142 289 HSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANW 359 (512)
Q Consensus 289 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 359 (512)
+.|++++|+..+++. .+.|+ ...|..+..++...|++++|+..|+++++++|+++.++..+..+..+....
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~ 161 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 161 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999988877 55554 448889999999999999999999999999999888777776666544433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.03 E-value=2.2e-05 Score=58.90 Aligned_cols=85 Identities=7% Similarity=-0.067 Sum_probs=40.4
Q ss_pred HHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCC
Q 043142 214 ITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGR 292 (512)
Q Consensus 214 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 292 (512)
...+.+.|++++|+..|++.....+-+...|..+..++.+.|++++|+..|+..++. .| +...+..+...|...|+
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccc---ccccccchHHHHHHHHHCCC
Confidence 334444555555555555544444434444444455555555555555555544422 33 34444444444444455
Q ss_pred hHHHHHHHH
Q 043142 293 LDEACDLIM 301 (512)
Q Consensus 293 ~~~A~~~~~ 301 (512)
+++|++.++
T Consensus 100 ~~~A~~~l~ 108 (112)
T d1hxia_ 100 ANAALASLR 108 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=3.9e-05 Score=58.35 Aligned_cols=96 Identities=9% Similarity=-0.076 Sum_probs=43.4
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC---hHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHH
Q 043142 44 LIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSA---IEEGRRIHEDVIRNKWETD-VFVGAALIDMYA 119 (512)
Q Consensus 44 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~ 119 (512)
++..+...+++++|.+.|++....+ +.+..++..+..++.+.++ +++|.++++.+++....|+ ..++..|..+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 4444455555555555555554432 1123344444444443322 2335555555444332121 123444555555
Q ss_pred hCCChHHHHHHHHhhhhCCCC
Q 043142 120 KCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~~pd 140 (512)
+.|++++|++.|+++.+.+|+
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~ 104 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQ 104 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhhHHHHHHHHHHHHhCcC
Confidence 555555555555555555544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.00 E-value=3.2e-05 Score=61.68 Aligned_cols=120 Identities=11% Similarity=0.035 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 043142 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-----PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTC 282 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 282 (512)
..+......+.+.|++++|+..|.+...... ++.... ..... ....+|+.
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~-----------------~~~~~--------~~~~~~~N 72 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL-----------------DKKKN--------IEISCNLN 72 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH-----------------HHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH-----------------Hhhhh--------HHHHHHhh
Confidence 3455566677777777777777777654321 111100 00000 01235666
Q ss_pred HHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 043142 283 MVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNI 352 (512)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 352 (512)
+..+|.+.|++++|++.+++. .+.| +..+|..+..++...|++++|...|+++++++|.++.+...+..+
T Consensus 73 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 73 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 777788888888888888776 3445 455888888888888888888888888888888887666555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=7.5e-05 Score=60.64 Aligned_cols=110 Identities=17% Similarity=0.113 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 043142 40 LWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYA 119 (512)
Q Consensus 40 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 119 (512)
.+......+.+.|++++|+..|++.+..- |....+ ......... .+ -..+|+.+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~~~-----------~~~~~~~~~-~~-------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ-AL-------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH-HH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhcccc-----------chHHHhhhc-hh-------HHHHHHHHHHHHH
Confidence 34455566777788888888887776531 111000 000000000 00 0123444555555
Q ss_pred hCCChHHHHHHHHhhhhCCC-ChhHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 043142 120 KCSCVVNARQVFDKILERDP-SEATLVTVISASADIAALPQGRELHGFSWRH 170 (512)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 170 (512)
+.|++++|+..++.....+| +..++..+..++...|++++|...|+.+++.
T Consensus 74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 55555555555555555555 3334555555555555555555555555554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=2.6e-06 Score=82.94 Aligned_cols=129 Identities=9% Similarity=-0.014 Sum_probs=72.5
Q ss_pred cCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 043142 189 CGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFE 265 (512)
Q Consensus 189 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 265 (512)
.+.++.|...+....+ .+...|..+...+.+.|+.++|...+.+..... | ..++..+...+...|++++|...|+
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~-~~~~~~LG~l~~~~~~~~~A~~~y~ 176 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-C-QHCLVHLGDIARYRNQTSQAESYYR 176 (497)
T ss_dssp HHHHHHHHHHHTC-------------------------------CCHHHHHH-H-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-H-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4455566555554432 234567777778888888888888776654321 2 3567778888888999999999999
Q ss_pred HHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-C-CCCCHhHHHHHHHHHHHc
Q 043142 266 SMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-R-VKPDPGVWGALLNSCKLH 322 (512)
Q Consensus 266 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~ 322 (512)
+..+. .| +...|+.|...|...|+..+|...|.+. . ..|-..++..|...+.+.
T Consensus 177 ~A~~l---~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 177 HAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHH---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 88743 67 5678999999999999999998888776 3 245566787777766543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.89 E-value=0.00015 Score=57.68 Aligned_cols=113 Identities=14% Similarity=-0.002 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMY 118 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 118 (512)
..+......+.+.|++.+|+..|.+.+..- |..... .-.... .... .....+|+.+..+|
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~~~-----------~~~~~~---~~~~----~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEW-----------DDQILL---DKKK----NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTC-----------CCHHHH---HHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchhhh-----------hhHHHH---Hhhh----hHHHHHHhhHHHHH
Confidence 345556677888899999999888877531 111000 000000 0000 01123455566666
Q ss_pred HhCCChHHHHHHHHhhhhCCC-ChhHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 043142 119 AKCSCVVNARQVFDKILERDP-SEATLVTVISASADIAALPQGRELHGFSWRHR 171 (512)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 171 (512)
.+.|++++|++.+++..+.+| +..+|..+..++...|++++|...|...++..
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 666666666666666666666 33566666666666666666666666666654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=2.6e-05 Score=60.12 Aligned_cols=91 Identities=12% Similarity=0.097 Sum_probs=68.6
Q ss_pred HHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-------hHHHHHH
Q 043142 281 TCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAG-------NYVILSN 351 (512)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l~~ 351 (512)
-.+...|.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..++++++++|.++. +|..+..
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34566777888888888888776 3344 4568888888899999999999999999988877655 4445666
Q ss_pred HHHhccChhHHHHHHHHHHh
Q 043142 352 IYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 352 ~~~~~g~~~~a~~~~~~m~~ 371 (512)
.+...+++++|.+.+++...
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 67777888888888876653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.86 E-value=6.6e-05 Score=61.44 Aligned_cols=121 Identities=12% Similarity=0.039 Sum_probs=86.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCH
Q 043142 246 GVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHV 325 (512)
Q Consensus 246 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~ 325 (512)
.........|++++|.+.|...+.- .+.... ..+....-......-++. .....+..+...+...|++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l---~rG~~l-----~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALRE---WRGPVL-----DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT---CCSSTT-----GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh---Cccccc-----ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence 3445677889999999999998743 332210 000000011111111111 1234778899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh-----CCCccCC
Q 043142 326 KLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMID-----RGIKKSI 378 (512)
Q Consensus 326 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~ 378 (512)
++|...++++++.+|.+...|..++.+|.+.|++++|++.|+++.+ .|+.|.+
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 9999999999999999999999999999999999999999998743 5776654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.84 E-value=0.0089 Score=53.39 Aligned_cols=133 Identities=10% Similarity=0.064 Sum_probs=73.7
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 043142 6 HPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSA 85 (512)
Q Consensus 6 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 85 (512)
|.+--....+.|-+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.- +..+|.-+..+|.+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVD 81 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHh
Confidence 333344556666677888888888876653 6777777788888888777766441 34567777777776
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhC-CCChhHHHHHHHHHhcc
Q 043142 86 LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILER-DPSEATLVTVISASADI 154 (512)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~pd~~t~~~ll~~~~~~ 154 (512)
......+ .+.......++.....++..|-..|.+++...+++..... .++...++-++..+++.
T Consensus 82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 146 (336)
T ss_dssp TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence 6555443 1222222344455566777777888888888777766543 23444555566655553
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=1.7e-06 Score=84.33 Aligned_cols=134 Identities=10% Similarity=-0.041 Sum_probs=66.7
Q ss_pred cCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHH
Q 043142 220 HGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDL 299 (512)
Q Consensus 220 ~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 299 (512)
.+.++.|+..+.+..+..+++...+..+...+.+.|+.++|...+....+. .| ...+..+.+.+...|++++|+..
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~ 174 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESY 174 (497)
T ss_dssp HHHHHHHHHHHTC-------------------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHH
Confidence 344455555544444333455556666666777777777777666655421 12 24566677777777777777777
Q ss_pred HHhC-CCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc
Q 043142 300 IMQM-RVKPDP-GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAA 357 (512)
Q Consensus 300 ~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 357 (512)
+++. .+.|+. ..|+.|...+...|+..+|...|.+++..+|+.+.++..|...+.+..
T Consensus 175 y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 7766 445554 377777777777777777777777777777777777777776665443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.00015 Score=55.57 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=29.1
Q ss_pred HHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 213 MITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 213 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
+...|.+.|++++|+..|++..+..+.+...+..+..+|.+.|++++|...++.++
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 44445555555555555555555444444555555555555555555555555544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.74 E-value=7.2e-05 Score=60.70 Aligned_cols=65 Identities=6% Similarity=-0.094 Sum_probs=60.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 309 PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 309 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
...|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|.+.|++..+..
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34778888899999999999999999999999999999999999999999999999999988753
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.66 E-value=5.7e-05 Score=59.50 Aligned_cols=127 Identities=14% Similarity=0.101 Sum_probs=72.4
Q ss_pred HHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHH
Q 043142 217 YAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRG----------GLFDEGRMFFESMVRDYHIDP-SVQHYTCMVD 285 (512)
Q Consensus 217 ~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 285 (512)
|-+.+.+++|+..|++..+..|.+..++..+..++... +.+++|+..|++.++ +.| +...|..+..
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhHHH
Confidence 44555667777777777766666666666666665533 233455555555542 244 3444444444
Q ss_pred HHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHH
Q 043142 286 LLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKL 365 (512)
Q Consensus 286 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 365 (512)
+|...|++ .++... ..+++++|.+.|+++++++|.+...+..|... ..|.++
T Consensus 84 ~y~~~g~~------------~~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~ 135 (145)
T d1zu2a1 84 AYTSFAFL------------TPDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQL 135 (145)
T ss_dssp HHHHHHHH------------CCCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHH
T ss_pred HHHHcccc------------hhhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHH
Confidence 44333221 011110 11246889999999999999987555444433 466677
Q ss_pred HHHHHhCCC
Q 043142 366 RKLMIDRGI 374 (512)
Q Consensus 366 ~~~m~~~g~ 374 (512)
+.+..+.|+
T Consensus 136 ~~e~~k~~~ 144 (145)
T d1zu2a1 136 HAEAYKQGL 144 (145)
T ss_dssp HHHHHHSSS
T ss_pred HHHHHHHhc
Confidence 777666654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.65 E-value=0.00029 Score=56.88 Aligned_cols=114 Identities=8% Similarity=0.003 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 043142 241 HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCK 320 (512)
Q Consensus 241 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 320 (512)
...+......+.+.|++++|...|...+......+... .+. ......+ ...+|..+..++.
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~--------------~~~-~~~~~~~----~~~~~~Nla~~~~ 75 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLS--------------EKE-SKASESF----LLAAFLNLAMCYL 75 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC--------------HHH-HHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccc--------------hhh-hhhcchh----HHHHHHhHHHHHH
Confidence 34455556667777777777777776654321111100 000 0000100 1235667888899
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 321 LHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 321 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
..|++++|+..++++++++|.++.+|..++.+|...|++++|...|++..+..
T Consensus 76 ~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 76 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999987653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.57 E-value=0.024 Score=50.55 Aligned_cols=246 Identities=15% Similarity=0.089 Sum_probs=129.8
Q ss_pred CCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHH
Q 043142 70 VPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVIS 149 (512)
Q Consensus 70 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~ 149 (512)
.||..-...+..-|.+.|.++.|..+|..+. -|..++..|.+.++++.|.+++.+. -+..+|..+..
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~----~~~~~~k~~~~ 77 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCF 77 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc----CCHHHHHHHHH
Confidence 3565556667777888888888888887542 2556777788888888888877655 24557777777
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCChHHH
Q 043142 150 ASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR---EKRVVSWNAMITGYAMHGHSTKA 226 (512)
Q Consensus 150 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 226 (512)
+|.+......+ .+.......+......++..|-..|.+++...+++... ..+...++-++..|++.+ .++.
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl 151 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKM 151 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHH
Confidence 77665544332 12222233344445567777777777777777777543 233455666777776654 3344
Q ss_pred HHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCC
Q 043142 227 LDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVK 306 (512)
Q Consensus 227 ~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 306 (512)
++.++... +......++..|.+.+.+ .-++-.|.+.|.+++|..++-.-+
T Consensus 152 ~e~l~~~s-----~~y~~~k~~~~c~~~~l~-----------------------~elv~Ly~~~~~~~~A~~~~i~~~-- 201 (336)
T d1b89a_ 152 REHLELFW-----SRVNIPKVLRAAEQAHLW-----------------------AELVFLYDKYEEYDNAIITMMNHP-- 201 (336)
T ss_dssp HHHHHHHS-----TTSCHHHHHHHHHTTTCH-----------------------HHHHHHHHHTTCHHHHHHHHHHST--
T ss_pred HHHHHhcc-----ccCCHHHHHHHHHHcCCh-----------------------HHHHHHHHhcCCHHHHHHHHHHcc--
Confidence 44333321 111112233444443333 334455556666666665554432
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHH
Q 043142 307 PDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRK 367 (512)
Q Consensus 307 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (512)
++..-....+..+.+..+.+..-++....++..| .....|+......-+..+..+.++
T Consensus 202 ~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p---~~i~~lL~~v~~~~d~~r~V~~~~ 259 (336)
T d1b89a_ 202 TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFS 259 (336)
T ss_dssp TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCH---HHHHHHHHHhccCCCHHHHHHHHH
Confidence 3333444556666777777766666666665444 344556655555555555555544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.55 E-value=0.00015 Score=56.90 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=72.4
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCc-chHHHHHHHHhc----------cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 043142 50 WNGPYEVAIELYYRLLEIGLVPDN-FTFPFALKACSA----------LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMY 118 (512)
Q Consensus 50 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~----------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 118 (512)
+.+.+++|+..|+...+. .|+. .++..+..++.. .+.+++|.+.+++.++.. |.+...|..+...|
T Consensus 9 r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence 344456666666666553 2332 344444444432 234566777777777765 45667777777777
Q ss_pred HhCC-----------ChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 043142 119 AKCS-----------CVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRF 172 (512)
Q Consensus 119 ~~~g-----------~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 172 (512)
...| .+++|.+.|++..+.+|+...+...+..+ ..+.+++.++.+.|+
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 6654 35788888999988888877776665554 456677777777664
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.52 E-value=0.00014 Score=63.41 Aligned_cols=125 Identities=10% Similarity=0.011 Sum_probs=79.2
Q ss_pred HHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHH
Q 043142 218 AMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRLDEA 296 (512)
Q Consensus 218 ~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 296 (512)
.+.|++++|+..+++..+..+.|...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHHH
Confidence 45688888888888888877777888888888888888888888888887643 563 34444444444433333333
Q ss_pred HHHHHhCC--CCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 043142 297 CDLIMQMR--VKPDP-GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGN 345 (512)
Q Consensus 297 ~~~~~~m~--~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 345 (512)
..-..... ..|+. ..+......+...|+.++|...++++.+..|..+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 22222111 12322 233444455677788888888888888877766543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.48 E-value=0.00081 Score=54.67 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hcCCCCChhH
Q 043142 207 VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVR----DYHIDPSVQH 279 (512)
Q Consensus 207 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 279 (512)
+..+..+...+...|++++|+..++++....+-+...|..++.++...|+.++|.+.|+++.+ +.|+.|...+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 356677788888888888888888888888778888888888888888998888888887633 3588887654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=0.00061 Score=48.82 Aligned_cols=71 Identities=18% Similarity=0.076 Sum_probs=52.7
Q ss_pred HHHHHHHhccCChHHHHHHHHhC----C----CCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 043142 281 TCMVDLLGHSGRLDEACDLIMQM----R----VKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSN 351 (512)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~m----~----~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 351 (512)
--+...+.+.|++++|...|++. + ..++ ..++..|..++.+.|++++|+..++++++++|.++.++..+..
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~ 88 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY 88 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 34555666677777776666654 1 1223 3478889999999999999999999999999999887776643
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.37 E-value=0.00051 Score=54.58 Aligned_cols=87 Identities=10% Similarity=-0.081 Sum_probs=61.5
Q ss_pred HHhccCChHHHHHHHHhC----CCCCC----------HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------
Q 043142 286 LLGHSGRLDEACDLIMQM----RVKPD----------PGVWGALLNSCKLHGHVKLAELALEKLIELEPH---------- 341 (512)
Q Consensus 286 ~~~~~g~~~~A~~~~~~m----~~~p~----------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~---------- 341 (512)
.+.+.|++++|+..|++. +..|+ ...|+.+..+|...|++++|...+++++++.|.
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344555566665555544 11111 346778888889999999999999888865321
Q ss_pred -CCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 342 -DAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 342 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
...++..+..+|...|++++|...|++..+.
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1235677899999999999999999987754
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.10 E-value=0.0022 Score=50.61 Aligned_cols=31 Identities=13% Similarity=-0.044 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIELEPH 341 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 341 (512)
.+..+..+|...|++++|+..|++++++.|.
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 5667788899999999999999999987543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.09 E-value=0.00025 Score=61.81 Aligned_cols=120 Identities=8% Similarity=-0.015 Sum_probs=68.8
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHH
Q 043142 84 SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGREL 163 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~ 163 (512)
.+.|++++|.+.++..++.. |.|...+..|...|+..|++++|.+.|+...+.+|+..
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~--------------------- 64 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL--------------------- 64 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH---------------------
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH---------------------
Confidence 34577777777777777665 55667777777777777777777777777766665432
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC
Q 043142 164 HGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQL-REKR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ 238 (512)
Q Consensus 164 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m-~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 238 (512)
..+..+...+...+..+++..-.... ...+ ...+......+...|+.++|.+++++..+..+
T Consensus 65 -------------~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 65 -------------PGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred -------------HHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 22222222222222333322221111 1111 22333345567778888888888888876544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.0033 Score=44.77 Aligned_cols=64 Identities=13% Similarity=-0.005 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 310 GVWGALLNSCKLHGHVKLAELALEKLIELEPHD-------AGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 310 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
..+-.+...+.+.|++++|...|+++++..|.+ ..++..|..+|.+.|++++|.+.+++..+..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 334467788899999999999999999875432 3478889999999999999999999998754
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.10 E-value=0.34 Score=36.09 Aligned_cols=110 Identities=12% Similarity=0.018 Sum_probs=56.7
Q ss_pred CchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----CCChHHHH
Q 043142 53 PYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK----CSCVVNAR 128 (512)
Q Consensus 53 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 128 (512)
++++|++.|++..+.| +......+. .....+.++|.+.+....+.| ++.....|..+|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 4567777777776655 222233332 233456677777777766665 34444555555543 34556666
Q ss_pred HHHHhhhhCCCChhHHHHHHHHHhc----cCChHHHHHHHHHHHHcC
Q 043142 129 QVFDKILERDPSEATLVTVISASAD----IAALPQGRELHGFSWRHR 171 (512)
Q Consensus 129 ~~~~~m~~~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g 171 (512)
+.|++..+.+ ++.....|...+.. ..+.++|.+.+....+.|
T Consensus 80 ~~~~~aa~~g-~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN-DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC-cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 6666665543 22223333333322 234555555555555544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.10 E-value=0.38 Score=34.90 Aligned_cols=140 Identities=9% Similarity=0.034 Sum_probs=92.4
Q ss_pred HHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHH
Q 043142 218 AMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEAC 297 (512)
Q Consensus 218 ~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 297 (512)
...|..++..++..+..... +..-|+-++.-....-+-+-..+.++.+-+-+.+ ..++++....
T Consensus 13 ildG~ve~Gveii~k~~~ss--~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl--------------s~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS--TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHcccC--CccccceeeeecccccchHHHHHHHHHHhhhcCc--------------hhhhcHHHHH
Confidence 34566666666666665432 2223333333333334444455555555333322 3345555555
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 298 DLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 298 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
..+-.+. .+.......+.....+|+-+.-.++++.+.+.+..+|.....+..+|.+.|...++-+++.+.-++|++
T Consensus 77 ~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 77 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 5555553 344556777888899999999999999988887778889999999999999999999999999999985
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.11 E-value=0.68 Score=33.52 Aligned_cols=63 Identities=10% Similarity=0.077 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 043142 141 EATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE 204 (512)
Q Consensus 141 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 204 (512)
+.-+...++.....|.-+.-..++..+.+.+ ++++...-.+..+|.+.|+..+|.+++.+.-+
T Consensus 86 se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 86 NEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3444555666666777777777777766644 55566666677777777777777776665543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.39 E-value=0.81 Score=33.82 Aligned_cols=16 Identities=0% Similarity=-0.051 Sum_probs=8.2
Q ss_pred ChHHHHHHHHHHHHhC
Q 043142 88 AIEEGRRIHEDVIRNK 103 (512)
Q Consensus 88 ~~~~a~~~~~~~~~~g 103 (512)
|+++|.++|.+..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4445555555555444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.43 E-value=0.9 Score=32.99 Aligned_cols=71 Identities=13% Similarity=-0.044 Sum_probs=48.7
Q ss_pred CCcchHHHHHHHHhcc---CChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh
Q 043142 71 PDNFTFPFALKACSAL---SAIEEGRRIHEDVIRNKWETD-VFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA 142 (512)
Q Consensus 71 p~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~ 142 (512)
|...|-.....++.+. .++++|..+++.+.+.+ +.+ ...+-.|.-+|.+.|++++|++.++.+.+.+|+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence 3333433344455544 45678899999888764 223 24555677788899999999999999999888644
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.35 E-value=5.1 Score=36.43 Aligned_cols=204 Identities=7% Similarity=-0.053 Sum_probs=112.9
Q ss_pred CChHHHHHHHHHHHHcCCCCchHH---HHHHHHHHHhcCCHHHHHHHHHhcCC--CCchHHHHHHHHHHHcCChHHHHHH
Q 043142 155 AALPQGRELHGFSWRHRFELNVKV---KTALVDMYAKCGLVKVARNLFEQLRE--KRVVSWNAMITGYAMHGHSTKALDL 229 (512)
Q Consensus 155 ~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~ 229 (512)
.+.+.+...+.............. ...+.......+..+.|...+..... .+.....-.+......+++..+...
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~ 307 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTW 307 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHH
Confidence 456666666666554332221111 11222233345566667666655432 2222222233344567788888888
Q ss_pred HHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCH
Q 043142 230 FEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDP 309 (512)
Q Consensus 230 ~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~ 309 (512)
+..|.........-.--+..+....|+.+.|..+|..+. . .++ -|..|...- .|..-. .. ....+..++.
T Consensus 308 ~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a-~---~~~--fYG~LAa~~--Lg~~~~-~~-~~~~~~~~~~ 377 (450)
T d1qsaa1 308 LARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM-Q---QRG--FYPMVAAQR--IGEEYE-LK-IDKAPQNVDS 377 (450)
T ss_dssp HHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-T---SCS--HHHHHHHHH--TTCCCC-CC-CCCCCSCCCC
T ss_pred HHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh-c---CCC--hHHHHHHHH--cCCCCC-CC-cCCCCccHHH
Confidence 888754322334444556788888899999999998875 2 233 344433211 111000 00 0000111111
Q ss_pred h-H---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 310 G-V---WGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 310 ~-~---~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
. . -..-+..+...|....|...+..+.+.. ++.-...+.....+.|.++.|+....+..
T Consensus 378 ~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 378 ALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 1 0 1123455778899999999998887543 34566788888899999999998776653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.23 E-value=0.57 Score=34.08 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
.+-.|.-+|.+.|++++|.+.++++++.+|.+.
T Consensus 75 ~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 75 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence 333444445555555555555555555555543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=89.51 E-value=7.3 Score=35.30 Aligned_cols=322 Identities=8% Similarity=-0.063 Sum_probs=146.9
Q ss_pred HHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHh--cCCchHHHHHHHHHHHCCCCCCcch----HHHHHHHHhccCC
Q 043142 15 HLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAW--NGPYEVAIELYYRLLEIGLVPDNFT----FPFALKACSALSA 88 (512)
Q Consensus 15 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~ 88 (512)
.-..+.|+.+.+.++...+..--...|-..-..-.+ .....+...+++ +. |+... -...+..+.+.++
T Consensus 14 ~~a~~~~~~~~~~~~~~~L~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~---~~---p~~P~~~~lr~~~l~~L~~~~~ 87 (450)
T d1qsaa1 14 KQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVR---AN---PTLPPARTLQSRFVNELARRED 87 (450)
T ss_dssp HHHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHH---HC---TTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHhhhcCCCCHHHHHHHHHHhccccCCHHHHHHHHH---HC---CCChhHHHHHHHHHHHHHhccC
Confidence 334567888888888888854113333322221112 233344433333 22 34322 2233456667777
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSW 168 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 168 (512)
++...+.+. ..+.+...-..+..+..+.|+.++|.+.+..+=..+. ...+....++....
T Consensus 88 w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~---------------~~p~~c~~l~~~~~ 147 (450)
T d1qsaa1 88 WRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK---------------SQPNACDKLFSVWR 147 (450)
T ss_dssp HHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS---------------CCCTHHHHHHHHHH
T ss_pred HHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---------------CCchHHHHHHHHHH
Confidence 665443221 2244555555677778888988888877766533221 11222333444444
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHH
Q 043142 169 RHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVL 248 (512)
Q Consensus 169 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll 248 (512)
+.|. .+...+-.-+......|+...|..+...+...........+....+ +..+...... ..++......+.
T Consensus 148 ~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~----~~~~~~~~~~~~ 219 (450)
T d1qsaa1 148 ASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART----TGATDFTRQMAA 219 (450)
T ss_dssp HTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH----SCCCHHHHHHHH
T ss_pred hcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhc----CCCChhhhHHHH
Confidence 4442 2333333445555666777777777776654433333333333221 2222221111 112222222222
Q ss_pred HHHhc--CCCHHHHHHHHHHHHHhcCCCCCh--hHHHHHHHHHhccCChHHHHHHHHhCC-CCCCHhHHHHHHHHHHHcC
Q 043142 249 SACSR--GGLFDEGRMFFESMVRDYHIDPSV--QHYTCMVDLLGHSGRLDEACDLIMQMR-VKPDPGVWGALLNSCKLHG 323 (512)
Q Consensus 249 ~a~~~--~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g 323 (512)
.+..+ ..+.+.+..++........+.++. .....+...+...+..+.|..++.... ...+.....-.+......+
T Consensus 220 ~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~ 299 (450)
T d1qsaa1 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTG 299 (450)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcC
Confidence 22222 234555555555554433222211 111112222233444555555554441 1223332223333344455
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 324 HVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 324 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
+...+...++.+.......+....=+..++...|+.++|...|....
T Consensus 300 ~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 66666655554432222223344445566666666666666666543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.32 E-value=1.3 Score=30.22 Aligned_cols=59 Identities=24% Similarity=0.212 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 043142 56 VAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALI 115 (512)
Q Consensus 56 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 115 (512)
++.+-++.+....+.|++....+.++||.+.+++..|.++++.+.... .++...|..++
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 555666666667778888888888888888888888888887766443 33444565554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.82 E-value=2.7 Score=28.70 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 043142 222 HSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVD 285 (512)
Q Consensus 222 ~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 285 (512)
+.-++..-++.+-.... |++....+.+.||.+.+++..|.++|+.+..+.| ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 34456666666666666 9999999999999999999999999999865543 44556666553
|