Citrus Sinensis ID: 043145

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
WAEITAATKTGFSVTGSAATGKVGPVVGLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMKQKHTS
cHHHHHHHcccEEEEEcccccccccEEEEEEEEEcccEEEEEEEcccEEcccccEEEEEccccEEEEEEEEEcccEEEEEEccEEEEEEEEccccccEEEEEEcccccccccEEEEEccccEEEEEEEcccccc
cccHHHcccccEEEEcccccccccccEEEEEccccccEEEEEEEcccccccccEEEEEEccccEEEEEEEEEcccEEEEccccEEEEEEEcccccccEEEEEEccccccHHHcccccccccEEEEEEEcccccc
WAEITAATktgfsvtgsaatgkvgpvvglvdigecedsYMFRValpgvkrddgdfscevdpmgKVLIKGVTTTGEKSVYKYSQVFEmqtqnlcppghfsisfqlpgpvnpeqfsgnfgidGILEGIVMKQKHTS
waeitaatktgfsvtgsaatgkvgpVVGLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVlikgvtttgeKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMKQKHTS
WAEITAATKTGFSVTGSAATGKVGPVVGLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMKQKHTS
**********GFSVTGSAATGKVGPVVGLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILEGIVM******
*******TKTGFSVTGSAATGKVGPVVGLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLI********************QTQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILEGI*MKQ****
WAEITAATKTGFSVTGSAATGKVGPVVGLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMKQKHTS
WAEITAATKTGFSVTGSAATGKVGPVVGLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMKQ****
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
WAEITAATKTGFSVTGSAATGKVGPVVGLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMKQKHTS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query134 2.2.26 [Sep-21-2011]
Q4UJB1163 Small heat shock protein yes no 0.619 0.509 0.333 0.0005
>sp|Q4UJB1|HSPC4_RICFE Small heat shock protein C4 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=hspc4-1 PE=3 SV=1 Back     alignment and function desciption
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 10/93 (10%)

Query: 31  DIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQ 90
           DI E E  Y   V LPGV +D+ D   + +      I  +    E+S  K    + M+ +
Sbjct: 63  DITENESEYHLEVELPGVTQDNIDLKIDSN------ILTIDGKKEQSTEKKDHNYHMKER 116

Query: 91  NLCPPGHFSISFQLPGPVNPEQFSGNFGIDGIL 123
                G FS S  LP  V+ E  + NF  DGIL
Sbjct: 117 YY---GSFSRSISLPSNVDEEHVTANFK-DGIL 145

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query134
255542586 409 conserved hypothetical protein [Ricinus 0.962 0.315 0.767 2e-54
296088310 751 unnamed protein product [Vitis vinifera] 0.947 0.169 0.763 2e-53
225450997 235 PREDICTED: uncharacterized protein LOC10 0.947 0.540 0.763 3e-53
356574933 396 PREDICTED: uncharacterized protein LOC10 0.992 0.335 0.744 4e-53
357441615 421 Heat shock protein-like protein [Medicag 0.977 0.311 0.732 8e-53
356533594 399 PREDICTED: uncharacterized protein LOC10 0.992 0.333 0.729 1e-52
449518673 391 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.962 0.329 0.689 2e-48
449442839 391 PREDICTED: uncharacterized protein LOC10 0.962 0.329 0.689 2e-48
297848066206 hypothetical protein ARALYDRAFT_892730 [ 0.962 0.626 0.658 4e-48
28558784 391 heat-shock protein-like protein [Cucumis 0.962 0.329 0.674 2e-47
>gi|255542586|ref|XP_002512356.1| conserved hypothetical protein [Ricinus communis] gi|223548317|gb|EEF49808.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 99/129 (76%), Positives = 117/129 (90%)

Query: 3   EITAATKTGFSVTGSAATGKVGPVVGLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPM 62
            I AA ++GF++TGSAA G+VGP++GL+DIGECEDSYMFR++LPGVKRD+ DFSC V+  
Sbjct: 278 RIIAAGRSGFALTGSAAMGQVGPIIGLMDIGECEDSYMFRISLPGVKRDEEDFSCVVEND 337

Query: 63  GKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGI 122
           G VLIKGVTTTGE++VY++SQVFEMQ++NLCPPG FSISFQLPGPVNP QFSGNFG DGI
Sbjct: 338 GMVLIKGVTTTGERTVYRFSQVFEMQSKNLCPPGEFSISFQLPGPVNPRQFSGNFGTDGI 397

Query: 123 LEGIVMKQK 131
           LEGIVMKQK
Sbjct: 398 LEGIVMKQK 406

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225450997|ref|XP_002280890.1| PREDICTED: uncharacterized protein LOC100249373 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356574933|ref|XP_003555597.1| PREDICTED: uncharacterized protein LOC100785823 [Glycine max] Back     alignment and taxonomy information
>gi|357441615|ref|XP_003591085.1| Heat shock protein-like protein [Medicago truncatula] gi|355480133|gb|AES61336.1| Heat shock protein-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356533594|ref|XP_003535347.1| PREDICTED: uncharacterized protein LOC100775950 [Glycine max] Back     alignment and taxonomy information
>gi|449518673|ref|XP_004166361.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101224805 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449442839|ref|XP_004139188.1| PREDICTED: uncharacterized protein LOC101212060 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297848066|ref|XP_002891914.1| hypothetical protein ARALYDRAFT_892730 [Arabidopsis lyrata subsp. lyrata] gi|297337756|gb|EFH68173.1| hypothetical protein ARALYDRAFT_892730 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|28558784|gb|AAO45755.1| heat-shock protein-like protein [Cucumis melo subsp. melo] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query134
TAIR|locus:2010995206 AT1G54850 "AT1G54850" [Arabido 0.962 0.626 0.643 5.6e-45
TAIR|locus:2010945349 AT1G54840 "AT1G54840" [Arabido 0.820 0.315 0.705 2.6e-40
TAIR|locus:2037380463 AT1G20870 "AT1G20870" [Arabido 0.888 0.257 0.512 4.2e-31
TAIR|locus:2011696143 AT1G76440 "AT1G76440" [Arabido 0.843 0.790 0.482 6.8e-24
TAIR|locus:2181803508 AT5G02480 "AT5G02480" [Arabido 0.783 0.206 0.294 0.00021
TAIR|locus:2010995 AT1G54850 "AT1G54850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 83/129 (64%), Positives = 110/129 (85%)

Query:     1 WAEITAATKTGFSVTGSAATGKVGPVVGLVDIGECEDSYMFRVALPGVKRDDGDFSCEVD 60
             ++ + + TKTG ++TGSAA GK+G  +GLVDI E EDSY FRVALPGV RD+ +FSCE++
Sbjct:    73 FSNLISQTKTGVALTGSAAMGKIGLTIGLVDIAESEDSYYFRVALPGVSRDEKEFSCEIE 132

Query:    61 PMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPEQFSGNFGID 120
             P GK++IKG TTTGE++V K++Q+F+M TQNLCPPGHF+I+FQLPGPV+ E+F+GNFG D
Sbjct:   133 PDGKIMIKGATTTGEQTVCKHNQIFKMLTQNLCPPGHFTINFQLPGPVSNEEFNGNFGSD 192

Query:   121 GILEGIVMK 129
             G+LEG+V K
Sbjct:   193 GVLEGVVKK 201
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005730 "nucleolus" evidence=IDA
GO:0009408 "response to heat" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
TAIR|locus:2010945 AT1G54840 "AT1G54840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037380 AT1G20870 "AT1G20870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011696 AT1G76440 "AT1G76440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181803 AT5G02480 "AT5G02480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query134
cd0646488 cd06464, ACD_sHsps-like, Alpha-crystallin domain ( 3e-12
cd0029880 cd00298, ACD_sHsps_p23-like, This domain family in 2e-08
pfam00011101 pfam00011, HSP20, Hsp20/alpha crystallin family 2e-04
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information 
 Score = 57.9 bits (141), Expect = 3e-12
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 11/99 (11%)

Query: 31  DIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQ 90
           D+ E +D+Y+    LPG K++  D   EV+  G + I G     E+    Y        +
Sbjct: 1   DVYETDDAYVVEADLPGFKKE--DIKVEVED-GVLTISGEREEEEEEEENY-------LR 50

Query: 91  NLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMK 129
                G FS SF+LP  V+P++   +   +G+L   + K
Sbjct: 51  RERSYGSFSRSFRLPEDVDPDKIKASLE-NGVLTITLPK 88

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. Length = 88
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 134
COG0071146 IbpA Molecular chaperone (small heat shock protein 99.96
PRK11597142 heat shock chaperone IbpB; Provisional 99.96
cd0647292 ACD_ScHsp26_like Alpha crystallin domain (ACD) fou 99.95
PRK10743137 heat shock protein IbpA; Provisional 99.95
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 99.95
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 99.94
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 99.92
PF00011102 HSP20: Hsp20/alpha crystallin family This prints e 99.92
cd0649884 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai 99.91
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 99.91
cd0647981 ACD_HspB7_like Alpha crystallin domain (ACD) found 99.91
cd0647586 ACD_HspB1_like Alpha crystallin domain (ACD) found 99.91
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 99.9
cd0648187 ACD_HspB9_like Alpha crystallin domain (ACD) found 99.89
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 99.89
cd0646488 ACD_sHsps-like Alpha-crystallin domain (ACD) of al 99.88
cd0647783 ACD_HspB3_Like Alpha crystallin domain (ACD) found 99.88
cd0652683 metazoan_ACD Alpha-crystallin domain (ACD) of meta 99.87
cd0648091 ACD_HspB8_like Alpha-crystallin domain (ACD) found 99.81
KOG0710196 consensus Molecular chaperone (small heat-shock pr 99.76
KOG3591173 consensus Alpha crystallins [Posttranslational mod 99.66
cd0029880 ACD_sHsps_p23-like This domain family includes the 99.61
cd0646978 p23_DYX1C1_like p23_like domain found in proteins 99.43
PF05455177 GvpH: GvpH; InterPro: IPR008633 This family consis 99.24
cd0646384 p23_like Proteins containing this p23_like domain 99.19
cd0646684 p23_CS_SGT1_like p23_like domain similar to the C- 98.98
PF0496979 CS: CS domain; InterPro: IPR017447 The function of 98.67
cd06465108 p23_hB-ind1_like p23_like domain found in human (h 98.5
PF08190328 PIH1: pre-RNA processing PIH1/Nop17 98.32
cd0648984 p23_CS_hSgt1_like p23_like domain similar to the C 98.26
cd0646785 p23_NUDC_like p23_like domain of NUD (nuclear dist 98.17
cd0648887 p23_melusin_like p23_like domain similar to the C- 98.13
cd0646892 p23_CacyBP p23_like domain found in proteins simil 98.11
cd0649385 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear 98.09
cd0649493 p23_NUDCD2_like p23-like NUD (nuclear distribution 97.81
cd00237106 p23 p23 binds heat shock protein (Hsp)90 and parti 97.54
KOG1309 196 consensus Suppressor of G2 allele of skp1 [Signal 97.21
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 97.19
cd0649087 p23_NCB5OR p23_like domain found in NAD(P)H cytoch 96.98
cd06495102 p23_NUDCD3_like p23-like NUD (nuclear distribution 96.53
cd0649287 p23_mNUDC_like p23-like NUD (nuclear distribution) 96.4
KOG1667320 consensus Zn2+-binding protein Melusin/RAR1, conta 86.71
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 84.4
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.96  E-value=1.2e-28  Score=176.98  Aligned_cols=99  Identities=25%  Similarity=0.426  Sum_probs=90.4

Q ss_pred             CceeeeeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEEC
Q 043145           25 PVVGLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQL  104 (134)
Q Consensus        25 ~~~P~~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~L  104 (134)
                      .+.|+|||+++++.|.|.++||||+++||+|++   .++.|+|+|++.....  .+...++++|+.    +|.|+|+|+|
T Consensus        38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~---~~~~l~I~g~~~~~~~--~~~~~~~~~e~~----~~~f~r~~~L  108 (146)
T COG0071          38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITV---EGNTLTIRGEREEEEE--EEEEGYLRRERA----YGEFERTFRL  108 (146)
T ss_pred             CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEE---ECCEEEEEEEeccccc--ccCCceEEEEEE----eeeEEEEEEC
Confidence            478999999999999999999999999999988   9999999999986332  456778999999    8999999999


Q ss_pred             CCCCccCceEEEeCCCCEEEEEEeecCCC
Q 043145          105 PGPVNPEQFSGNFGIDGILEGIVMKQKHT  133 (134)
Q Consensus       105 P~~v~~~~i~A~~~~nGvL~I~lPK~~~~  133 (134)
                      |..|+++.++|+| .||||+|+|||.+++
T Consensus       109 p~~v~~~~~~A~~-~nGvL~I~lpk~~~~  136 (146)
T COG0071         109 PEKVDPEVIKAKY-KNGLLTVTLPKAEPE  136 (146)
T ss_pred             cccccccceeeEe-eCcEEEEEEeccccc
Confidence            9999999999999 599999999998763

>PRK11597 heat shock chaperone IbpB; Provisional Back     alignment and domain information
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>PRK10743 heat shock protein IbpA; Provisional Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry Back     alignment and domain information
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21 Back     alignment and domain information
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 Back     alignment and domain information
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [] Back     alignment and domain information
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown Back     alignment and domain information
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins Back     alignment and domain information
>PF08190 PIH1: pre-RNA processing PIH1/Nop17 Back     alignment and domain information
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins Back     alignment and domain information
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins Back     alignment and domain information
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins Back     alignment and domain information
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP) Back     alignment and domain information
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins Back     alignment and domain information
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins Back     alignment and domain information
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor Back     alignment and domain information
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms] Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins Back     alignment and domain information
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins Back     alignment and domain information
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins Back     alignment and domain information
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only] Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query134
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 5e-08
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 6e-08
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 8e-08
1gme_A151 Heat shock protein 16.9B; small heat shock protein 9e-07
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 7e-05
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 4e-04
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 6e-04
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161 Back     alignment and structure
 Score = 48.2 bits (115), Expect = 5e-08
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 17/99 (17%)

Query: 30  VDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVL-IKG---VTTTGEKSVYKYSQVF 85
           + I E +        LPGV ++D      ++ +G  L I+         E     YS++ 
Sbjct: 59  ISIIEGDQHIKVIAWLPGVNKED----IILNAVGDTLEIRAKRSPLMITESERIIYSEIP 114

Query: 86  EMQTQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILE 124
           E              + +LP  V  E  S  F  +G+L 
Sbjct: 115 EE--------EEIYRTIKLPATVKEENASAKFE-NGVLS 144
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123 Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100 Back     alignment and structure
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151 Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101 Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175 Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query134
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 99.97
4fei_A102 Heat shock protein-related protein; stress respons 99.96
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 99.96
1gme_A151 Heat shock protein 16.9B; small heat shock protein 99.95
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 99.94
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 99.93
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 99.93
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 99.92
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 99.9
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 99.89
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 99.88
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 99.87
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 99.26
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 99.25
2k8q_A134 Protein SHQ1; beta-sandwich, CS domain, nucleus, s 98.47
3eud_A115 Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A 98.36
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 98.36
1wh0_A134 Ubiquitin carboxyl-terminal hydrolase 19; USP, CS 98.19
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 98.09
1wfi_A131 Nuclear distribution gene C homolog; NUDC, riken s 97.95
3igf_A374 ALL4481 protein; two-domained protein consisting o 97.94
3qor_A121 Nuclear migration protein NUDC; beta-sandwich, cha 97.94
2o30_A131 Nuclear movement protein; MCSG, structural genomic 97.92
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 97.91
2rh0_A157 NUDC domain-containing protein 2; 13542905, nuclea 97.79
2kmw_A150 Uncharacterized protein AT3G03773; protein structu 97.66
2cg9_X134 CO-chaperone protein SBA1; chaperone complex, HSP9 97.55
4fei_A102 Heat shock protein-related protein; stress respons 81.23
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
Probab=99.97  E-value=5.6e-31  Score=176.57  Aligned_cols=100  Identities=20%  Similarity=0.319  Sum_probs=89.4

Q ss_pred             CCceeeeeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCCCEEEEEEEEEcccccccccccEEEEEeecCCCCeEEEEEEE
Q 043145           24 GPVVGLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKGVTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQ  103 (134)
Q Consensus        24 ~~~~P~~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~~~~~g~F~r~i~  103 (134)
                      +.|.|++||+|++++|+|.++|||++++||+|++   .++.|+|+|+++....  ....+++++||.    +|.|.|+|.
T Consensus         1 ~~~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~---~~~~L~I~g~~~~~~~--~~~~~~~~~er~----~g~f~r~~~   71 (100)
T 3gla_A            1 AQWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQM---DKGILSIRGERKSESS--TETERFSRIERR----YGSFHRRFA   71 (100)
T ss_dssp             CCSCCCEEEEECSSEEEEEEECTTSCGGGCEEEE---ETTEEEEEEEECCGGG--SSGGGEEEECCC----CEEEEEEEE
T ss_pred             CCccCcEEEEECCCEEEEEEECCCCCHHHEEEEE---ECCEEEEEEEEcCcCc--cCCccEEEEeec----ceEEEEEEE
Confidence            3689999999999999999999999999999988   9999999999986543  445678999998    899999999


Q ss_pred             CCCCCccCceEEEeCCCCEEEEEEeecCCC
Q 043145          104 LPGPVNPEQFSGNFGIDGILEGIVMKQKHT  133 (134)
Q Consensus       104 LP~~v~~~~i~A~~~~nGvL~I~lPK~~~~  133 (134)
                      ||.+||.+.|+|+| +||+|+|++||.+.+
T Consensus        72 LP~~vd~~~i~A~~-~~GvL~I~~pK~~~a  100 (100)
T 3gla_A           72 LPDSADADGITAAG-RNGVLEIRIPKRPAA  100 (100)
T ss_dssp             CCTTBCTTSCEEEE-ETTEEEEEEEBC---
T ss_pred             CCCCcChHHeEEEE-eCCEEEEEEecCCCC
Confidence            99999999999999 599999999998753
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Back     alignment and structure
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Back     alignment and structure
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Back     alignment and structure
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Back     alignment and structure
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Back     alignment and structure
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Back     alignment and structure
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Back     alignment and structure
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Back     alignment and structure
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Back     alignment and structure
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 134
d1shsa_115 b.15.1.1 (A:) Small heat shock protein {Archaeon M 4e-10
d1gmea_150 b.15.1.1 (A:) Small heat shock protein {Wheat (Tri 1e-06
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115 Back     information, alignment and structure

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 51.6 bits (123), Expect = 4e-10
 Identities = 21/123 (17%), Positives = 36/123 (29%), Gaps = 17/123 (13%)

Query: 10  TGFSVTGSAATGKVGPVVGLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPMGKVLIKG 69
           TG  ++G        P+     I E +        LPGV ++  D           +   
Sbjct: 1   TGIQISGKGFM----PI----SIIEGDQHIKVIAWLPGVNKE--DIILNAVGDTLEIRAK 50

Query: 70  VTTTGEKSVYKYSQVFEMQTQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMK 129
            +        +                    + +LP  V  E  S  F  +G+L  I+ K
Sbjct: 51  RSPLMITESERIIYSEI------PEEEEIYRTIKLPATVKEENASAKF-ENGVLSVILPK 103

Query: 130 QKH 132
            + 
Sbjct: 104 AES 106
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query134
d1gmea_150 Small heat shock protein {Wheat (Triticum aestivum 99.95
d1shsa_115 Small heat shock protein {Archaeon Methanococcus j 99.94
d1rl1a_92 Suppressor of G2 allele of skp1 homolog, gst1 {Hum 98.65
d1wh0a_134 Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H 97.76
d1ejfa_110 Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960 97.72
d1wfia_131 Nuclear migration protein nudC {Mouse (Mus musculu 97.7
d1wgva_124 NudC domain containing protein 3, NUDCD3 (KIAA1068 97.33
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.95  E-value=4.4e-29  Score=177.03  Aligned_cols=122  Identities=18%  Similarity=0.300  Sum_probs=98.5

Q ss_pred             ChhhhHhhcCCCccCCCCCCCCCCCceeeeeEEEeCCEEEEEEEcCCCCCCCEEEEEEeCCC-CEEEEEEEEEccccccc
Q 043145            1 WAEITAATKTGFSVTGSAATGKVGPVVGLVDIGECEDSYMFRVALPGVKRDDGDFSCEVDPM-GKVLIKGVTTTGEKSVY   79 (134)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~di~e~~~~~~i~~~lPGv~~edI~V~v~~~~~-~~L~I~g~~~~~~~~~~   79 (134)
                      |.+.++.+...+...........+.+.|++||+|++++|+|+++|||++++||+|++   ++ +.|+|+|+++....  .
T Consensus        16 ~~d~f~~~~~~~~~~~~~~~~~~~~~~p~~dv~e~~~~~~i~~~lPG~~~edi~v~v---~~~~~l~i~~~~~~~~~--~   90 (150)
T d1gmea_          16 WADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEV---EDGNVLVVSGERTKEKE--D   90 (150)
T ss_dssp             GSSHHHHHHHHGGGTTSSCCSHHHHGGGCEEEEECSSEEEEEEECTTCCGGGEEEEE---ETTTEEEEEECCCCCCC--C
T ss_pred             hhchhhhhhhhhhccccccccccccCCCceeEEECCCEEEEEEEeCCCccCCEEEEE---EEccceeEEEEEecccc--c
Confidence            445555555444444444444445667999999999999999999999999999977   65 57899999775543  4


Q ss_pred             ccccEEEEEeecCCCCeEEEEEEECCCCCccCceEEEeCCCCEEEEEEeecCC
Q 043145           80 KYSQVFEMQTQNLCPPGHFSISFQLPGPVNPEQFSGNFGIDGILEGIVMKQKH  132 (134)
Q Consensus        80 ~~~~~~~~e~~~~~~~g~F~r~i~LP~~v~~~~i~A~~~~nGvL~I~lPK~~~  132 (134)
                      ...+++.+||.    +|.|+|+|.||.+||.++|+|+| +||||+|++||.+.
T Consensus        91 ~~~~~~~~e~~----~~~f~r~~~LP~~vd~~~i~A~~-~nGvL~I~lpK~~~  138 (150)
T d1gmea_          91 KNDKWHRVERS----SGKFVRRFRLLEDAKVEEVKAGL-ENGVLTVTVPKAEV  138 (150)
T ss_dssp             TTCEEEECCCC----CCCEEEEEECSSCCCGGGCEEEE-ETTEEEEEEECCCC
T ss_pred             ccceeeeeeec----cceEEEEEECCCCeeeceeEEEE-ECCEEEEEEEcCCc
Confidence            46678888888    89999999999999999999999 59999999999764
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure